Query 009951
Match_columns 521
No_of_seqs 182 out of 1321
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 19:16:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 100.0 1.3E-44 2.9E-49 402.7 42.0 330 164-496 2-383 (621)
2 PRK10669 putative cation:proto 100.0 1.4E-42 3E-47 382.8 41.8 331 163-495 2-390 (558)
3 PRK03659 glutathione-regulated 100.0 2.2E-42 4.8E-47 383.8 40.9 323 167-495 5-379 (601)
4 COG0475 KefB Kef-type K+ trans 100.0 4.6E-41 9.9E-46 356.3 38.7 317 165-486 4-377 (397)
5 COG4651 RosB Kef-type K+ trans 100.0 1.1E-41 2.4E-46 336.8 29.2 334 162-497 1-392 (408)
6 PLN03159 cation/H(+) antiporte 100.0 4.6E-41 9.9E-46 384.1 37.5 327 167-497 43-441 (832)
7 PRK05326 potassium/proton anti 100.0 5.1E-31 1.1E-35 291.3 34.2 328 167-499 6-393 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 6.3E-34 1.4E-38 298.6 -1.5 314 173-491 2-376 (380)
9 KOG1650 Predicted K+/H+-antipo 100.0 1.5E-28 3.2E-33 278.3 28.9 329 167-499 23-428 (769)
10 TIGR00932 2a37 transporter, mo 100.0 2.4E-27 5.1E-32 239.1 26.2 219 177-399 2-273 (273)
11 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 2E-19 4.4E-24 201.1 32.8 289 175-465 22-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.8 2.8E-18 6.1E-23 188.5 34.5 278 173-458 4-363 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.8 1.2E-16 2.6E-21 171.5 35.0 292 167-461 6-368 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.8 2.6E-17 5.6E-22 170.9 22.9 304 173-484 13-376 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.7 3.4E-15 7.4E-20 164.9 30.7 256 220-484 128-403 (559)
16 PRK14853 nhaA pH-dependent sod 99.5 5E-11 1.1E-15 126.6 27.9 235 231-492 130-394 (423)
17 KOG1965 Sodium/hydrogen exchan 99.2 3.2E-09 6.9E-14 115.3 24.3 289 167-459 35-414 (575)
18 KOG4505 Na+/H+ antiporter [Ino 99.1 1.6E-09 3.6E-14 110.1 17.6 239 220-462 127-383 (467)
19 TIGR00773 NhaA Na+/H+ antiport 98.9 1.7E-07 3.6E-12 98.4 21.0 201 235-462 124-344 (373)
20 PRK14856 nhaA pH-dependent sod 98.4 2.4E-05 5.2E-10 83.7 20.1 231 234-492 138-430 (438)
21 PRK09560 nhaA pH-dependent sod 98.2 0.00013 2.8E-09 77.1 20.9 230 234-491 130-383 (389)
22 PRK14855 nhaA pH-dependent sod 98.2 0.00012 2.6E-09 78.0 20.2 227 234-491 133-412 (423)
23 PRK09561 nhaA pH-dependent sod 98.2 0.00019 4E-09 75.8 20.5 230 234-491 130-382 (388)
24 PRK14854 nhaA pH-dependent sod 98.1 0.00031 6.7E-09 74.0 21.2 233 234-492 126-378 (383)
25 PF06965 Na_H_antiport_1: Na+/ 97.8 9.1E-05 2E-09 78.1 9.7 219 234-480 126-369 (378)
26 COG3004 NhaA Na+/H+ antiporter 97.8 0.0031 6.6E-08 64.9 19.8 229 234-492 133-385 (390)
27 TIGR00932 2a37 transporter, mo 97.4 0.018 3.9E-07 58.1 19.0 133 341-475 4-138 (273)
28 PRK03562 glutathione-regulated 97.3 0.019 4.1E-07 65.1 20.1 130 336-467 12-142 (621)
29 PRK12460 2-keto-3-deoxyglucona 97.2 0.0097 2.1E-07 61.4 14.6 148 342-494 153-305 (312)
30 PRK03659 glutathione-regulated 97.0 0.05 1.1E-06 61.5 20.3 131 336-468 12-143 (601)
31 COG0475 KefB Kef-type K+ trans 97.0 0.053 1.1E-06 58.3 19.0 141 334-476 11-155 (397)
32 KOG1966 Sodium/hydrogen exchan 97.0 0.00044 9.6E-09 75.9 3.0 228 218-457 156-407 (670)
33 PRK10669 putative cation:proto 97.0 0.057 1.2E-06 60.4 19.8 135 338-474 15-150 (558)
34 PRK05326 potassium/proton anti 96.6 0.093 2E-06 58.8 17.6 134 338-473 15-153 (562)
35 PLN03159 cation/H(+) antiporte 96.2 0.24 5.1E-06 58.2 18.5 137 343-481 57-210 (832)
36 COG0786 GltS Na+/glutamate sym 96.1 1.3 2.8E-05 47.3 21.9 107 335-441 224-341 (404)
37 PF05684 DUF819: Protein of un 95.9 2 4.4E-05 46.0 22.3 92 359-454 246-337 (378)
38 TIGR00831 a_cpa1 Na+/H+ antipo 95.6 0.3 6.6E-06 54.4 15.7 116 338-453 7-123 (525)
39 PF03601 Cons_hypoth698: Conse 95.6 0.46 1E-05 49.4 16.0 140 351-492 24-169 (305)
40 TIGR00793 kdgT 2-keto-3-deoxyg 95.3 0.14 3E-06 52.7 10.4 136 356-494 174-311 (314)
41 PF03812 KdgT: 2-keto-3-deoxyg 95.1 0.091 2E-06 54.3 8.6 132 357-494 175-311 (314)
42 COG2855 Predicted membrane pro 95.0 0.7 1.5E-05 48.4 14.7 135 346-482 30-165 (334)
43 TIGR00698 conserved hypothetic 94.7 1.6 3.5E-05 45.9 16.9 105 351-455 29-137 (335)
44 TIGR00210 gltS sodium--glutama 94.4 9 0.0002 41.4 23.2 90 352-442 244-338 (398)
45 TIGR00844 c_cpa1 na(+)/h(+) an 94.3 0.98 2.1E-05 52.5 15.3 105 346-451 31-145 (810)
46 PRK05274 2-keto-3-deoxyglucona 93.9 0.3 6.4E-06 51.2 9.4 136 355-494 175-313 (326)
47 COG4651 RosB Kef-type K+ trans 92.8 0.65 1.4E-05 48.0 9.4 131 335-468 12-144 (408)
48 TIGR00946 2a69 he Auxin Efflux 92.7 2.3 4.9E-05 44.1 13.7 135 353-491 181-319 (321)
49 PF03956 DUF340: Membrane prot 92.5 1.7 3.8E-05 42.1 11.6 128 357-492 2-138 (191)
50 PF00999 Na_H_Exchanger: Sodiu 90.4 0.034 7.4E-07 58.5 -2.8 109 342-450 9-123 (380)
51 TIGR00783 ccs citrate carrier 90.0 4 8.8E-05 43.1 12.1 116 352-467 203-327 (347)
52 TIGR03082 Gneg_AbrB_dup membra 89.9 17 0.00036 33.9 17.9 145 339-491 5-155 (156)
53 COG0679 Predicted permeases [G 89.6 11 0.00023 39.2 14.9 137 353-492 167-307 (311)
54 PF05145 AmoA: Putative ammoni 89.1 32 0.00068 36.0 27.2 151 334-493 157-314 (318)
55 COG0025 NhaP NhaP-type Na+/H+ 88.3 21 0.00045 38.9 16.7 68 384-451 64-133 (429)
56 COG1346 LrgB Putative effector 88.1 30 0.00065 34.5 17.8 109 373-492 62-171 (230)
57 TIGR00210 gltS sodium--glutama 87.5 46 0.001 36.0 19.5 110 382-492 65-182 (398)
58 PRK09903 putative transporter 86.4 21 0.00045 37.0 14.7 134 354-492 173-310 (314)
59 COG0786 GltS Na+/glutamate sym 83.7 4.7 0.0001 43.2 8.4 111 381-492 66-183 (404)
60 PF03616 Glt_symporter: Sodium 83.2 45 0.00098 35.6 15.8 92 352-444 246-342 (368)
61 COG3180 AbrB Putative ammonia 82.1 75 0.0016 33.8 17.1 146 339-493 16-168 (352)
62 COG3180 AbrB Putative ammonia 76.6 1.1E+02 0.0024 32.6 29.4 151 334-493 190-347 (352)
63 PRK10711 hypothetical protein; 76.6 50 0.0011 33.1 12.5 104 378-492 65-169 (231)
64 PF03616 Glt_symporter: Sodium 76.3 28 0.00061 37.1 11.6 90 382-471 65-159 (368)
65 PF03547 Mem_trans: Membrane t 75.5 44 0.00095 35.1 12.8 132 354-488 244-384 (385)
66 TIGR03802 Asp_Ala_antiprt aspa 74.9 72 0.0016 36.1 14.9 81 353-439 35-119 (562)
67 PF04172 LrgB: LrgB-like famil 69.9 84 0.0018 31.1 12.3 89 399-491 69-157 (215)
68 PRK04288 antiholin-like protei 69.6 1.3E+02 0.0028 30.3 20.9 104 378-492 70-174 (232)
69 PF03977 OAD_beta: Na+-transpo 64.7 2E+02 0.0043 30.6 15.2 74 384-459 69-142 (360)
70 TIGR00840 b_cpa1 sodium/hydrog 63.1 1.7E+02 0.0038 33.1 14.7 73 383-455 69-150 (559)
71 PRK04972 putative transporter; 61.7 79 0.0017 35.7 11.7 88 351-438 408-504 (558)
72 TIGR01625 YidE_YbjL_dupl AspT/ 60.6 42 0.0009 31.5 7.8 86 353-438 21-116 (154)
73 PF03601 Cons_hypoth698: Conse 60.4 2.2E+02 0.0047 29.7 19.2 34 373-406 264-297 (305)
74 TIGR00841 bass bile acid trans 59.6 1.6E+02 0.0034 30.1 12.6 102 387-492 14-120 (286)
75 PRK04972 putative transporter; 58.4 1.9E+02 0.0041 32.7 14.0 82 353-439 37-121 (558)
76 TIGR00659 conserved hypothetic 55.5 2.3E+02 0.0049 28.4 19.0 104 378-492 64-168 (226)
77 PRK03818 putative transporter; 50.8 3.1E+02 0.0067 31.0 14.0 82 357-438 34-121 (552)
78 TIGR00841 bass bile acid trans 50.0 2.8E+02 0.0061 28.3 12.6 102 358-461 145-249 (286)
79 PF03390 2HCT: 2-hydroxycarbox 49.5 3.9E+02 0.0084 29.2 22.8 85 383-467 306-394 (414)
80 PF03547 Mem_trans: Membrane t 49.0 2E+02 0.0044 30.1 11.8 101 359-460 12-117 (385)
81 PF13593 DUF4137: SBF-like CPA 48.7 3.3E+02 0.0072 28.3 14.9 136 355-492 6-146 (313)
82 TIGR03802 Asp_Ala_antiprt aspa 48.6 2.9E+02 0.0063 31.3 13.4 86 353-438 415-509 (562)
83 COG0385 Predicted Na+-dependen 48.4 3.5E+02 0.0077 28.5 22.5 69 420-492 235-304 (319)
84 COG0385 Predicted Na+-dependen 47.6 3E+02 0.0065 29.0 12.3 109 378-491 35-149 (319)
85 PRK14854 nhaA pH-dependent sod 47.0 1.2E+02 0.0026 32.6 9.5 24 382-405 60-83 (383)
86 PF05684 DUF819: Protein of un 46.6 4E+02 0.0087 28.6 18.2 150 354-509 26-182 (378)
87 PF06826 Asp-Al_Ex: Predicted 46.1 1.5E+02 0.0033 28.1 9.2 88 351-438 21-115 (169)
88 PRK14853 nhaA pH-dependent sod 45.4 3.9E+02 0.0084 29.3 13.2 22 382-403 66-87 (423)
89 PRK14855 nhaA pH-dependent sod 44.0 1.2E+02 0.0027 33.1 9.1 24 382-405 67-90 (423)
90 PRK04125 murein hydrolase regu 40.3 1.9E+02 0.004 26.9 8.5 84 165-248 6-119 (141)
91 PRK01658 holin-like protein; V 40.0 2.2E+02 0.0047 25.7 8.7 89 166-254 4-122 (122)
92 PF01758 SBF: Sodium Bile acid 39.2 3.4E+02 0.0073 25.6 12.5 98 391-492 8-111 (187)
93 PRK14856 nhaA pH-dependent sod 38.0 1.7E+02 0.0036 32.2 9.0 24 382-405 72-95 (438)
94 COG3329 Predicted permease [Ge 36.2 3.5E+02 0.0076 28.5 10.4 118 353-473 16-137 (372)
95 PRK09371 gas vesicle synthesis 35.9 26 0.00056 28.2 1.8 18 56-73 4-21 (68)
96 PRK10263 DNA translocase FtsK; 33.8 5.1E+02 0.011 32.6 12.9 34 352-396 62-95 (1355)
97 PF05145 AmoA: Putative ammoni 33.3 5.8E+02 0.013 26.6 13.6 128 357-493 3-135 (318)
98 TIGR00698 conserved hypothetic 32.4 6.3E+02 0.014 26.7 24.3 35 372-406 271-305 (335)
99 COG3493 CitS Na+/citrate sympo 32.0 6.7E+02 0.015 27.3 11.9 82 385-467 328-413 (438)
100 COG3263 NhaP-type Na+/H+ and K 31.9 6.5E+02 0.014 28.1 12.0 68 383-450 64-132 (574)
101 KOG1485 Mitochondrial Fe2+ tra 30.9 5.8E+02 0.013 27.9 11.5 29 493-521 324-352 (412)
102 KOG1650 Predicted K+/H+-antipo 28.9 1.4E+02 0.0031 35.1 7.2 31 377-407 82-112 (769)
103 PRK01821 hypothetical protein; 28.7 3.7E+02 0.0081 24.6 8.4 88 162-249 5-122 (133)
104 TIGR00946 2a69 he Auxin Efflux 28.6 5.4E+02 0.012 26.4 10.8 105 355-460 12-123 (321)
105 PRK04125 murein hydrolase regu 26.9 5.1E+02 0.011 24.0 12.5 48 377-424 56-108 (141)
106 PRK09561 nhaA pH-dependent sod 26.6 2.9E+02 0.0063 29.9 8.4 24 382-405 63-86 (388)
107 PRK05346 Na(+)-translocating N 26.5 55 0.0012 33.3 2.9 91 8-99 9-101 (256)
108 PRK09560 nhaA pH-dependent sod 25.8 2.9E+02 0.0063 29.9 8.2 24 382-405 63-86 (389)
109 TIGR02871 spore_ylbJ sporulati 23.4 7.7E+02 0.017 26.4 10.9 108 167-274 49-159 (362)
110 TIGR00773 NhaA Na+/H+ antiport 22.0 4.6E+02 0.01 28.3 8.8 24 382-405 56-79 (373)
111 TIGR03082 Gneg_AbrB_dup membra 21.6 1.2E+02 0.0026 28.1 4.0 32 174-205 2-35 (156)
112 PF13642 DUF4144: protein stru 21.5 48 0.001 28.9 1.2 24 137-160 32-55 (101)
113 TIGR03136 malonate_biotin Na+- 21.2 7.3E+02 0.016 26.8 9.9 114 316-432 204-330 (399)
114 CHL00118 atpG ATP synthase CF0 20.8 2.5E+02 0.0055 25.9 6.0 28 298-325 27-54 (156)
115 PF05982 DUF897: Domain of unk 20.6 1E+03 0.022 25.2 12.3 94 381-475 24-122 (327)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.3e-44 Score=402.68 Aligned_cols=330 Identities=25% Similarity=0.391 Sum_probs=288.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHHH------HH--------------------
Q 009951 164 VDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ-------------------- 217 (521)
Q Consensus 164 ~d~~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~~------~q-------------------- 217 (521)
.|++++.++.+++.++.+++++++|+|+|+++||+++|+++||+++|++++. .|
T Consensus 2 ~~~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~ 81 (621)
T PRK03562 2 MDSHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLW 81 (621)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 4678999999999999999999999999999999999999999999987521 11
Q ss_pred --------------------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHH
Q 009951 218 --------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVG 271 (521)
Q Consensus 218 --------------------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~~ 271 (521)
++|+++..++++|.+++.|||++++++++|++..++++||.+++++++||++++
T Consensus 82 ~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i 161 (621)
T PRK03562 82 KLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAI 161 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHh
Q 009951 272 LLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKL 351 (521)
Q Consensus 272 il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~l 351 (521)
+++++++.+....... ........+...++++++.+++++|+.+++++++.+. +.+|.+...++.++++++++++++
T Consensus 162 ~ll~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~--~~~e~~~~~~l~lv~~~a~la~~~ 238 (621)
T PRK03562 162 PLVAMIPLLAASGAST-TLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS--GLREVFTAVALFLVFGFGLLMEEV 238 (621)
T ss_pred HHHHHHHHHccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999988776432110 1111112222233334445666789999999998763 568888888888899999999999
Q ss_pred CchHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 352 GLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 431 (521)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~ 431 (521)
|+|+.+|||+||+++++.++++++.++++|++++|+|+||+++||++|+..+.+++..++.++++.+++|++++++.+++
T Consensus 239 Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~ 318 (621)
T PRK03562 239 GLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP 318 (621)
T ss_pred CccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877766666777899999999999999
Q ss_pred hCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 009951 432 FGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVM 496 (521)
Q Consensus 432 ~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~~~i~ 496 (521)
+|+++++++.+|+.|+|+|||++++++.|.+.|+++++.|++++.++++|++++|++.++++++.
T Consensus 319 ~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~ 383 (621)
T PRK03562 319 LGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLE 383 (621)
T ss_pred hCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876654
No 2
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=382.84 Aligned_cols=331 Identities=30% Similarity=0.489 Sum_probs=282.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHH------HHH-------------------
Q 009951 163 QVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------LVQ------------------- 217 (521)
Q Consensus 163 ~~d~~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~------~~q------------------- 217 (521)
++..+++.+++++++.+.+++++++|+|+|+++||+++|+++||+++|.+++ +.|
T Consensus 2 ~~~~~~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l 81 (558)
T PRK10669 2 HHATPLITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDL 81 (558)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHH
Confidence 3444788899999999999999999999999999999999999999888642 111
Q ss_pred ---------------------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHH
Q 009951 218 ---------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAV 270 (521)
Q Consensus 218 ---------------------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~ 270 (521)
.+|+++.+++++|++++.||+++++++++|++..++++||++++++++||+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~ 161 (558)
T PRK10669 82 MAVKSIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVM 161 (558)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---Cc-chh-hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 009951 271 GLLFALLPVLGGN---SG-LLQ-GMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSA 345 (521)
Q Consensus 271 ~il~all~~l~~~---~~-~~~-~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~ 345 (521)
++++.+++.+... +. ... ....+.+.+...++++++..+++|++.+|+.++..+ .+.+|.+.+.+++++++++
T Consensus 162 i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~e~~~l~~l~~~l~~a 239 (558)
T PRK10669 162 VLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA--TGSRELFTLSVLALALGIA 239 (558)
T ss_pred HHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHH
Confidence 9888887765431 11 110 112233333444556666677788889999988865 3467888777788888777
Q ss_pred HH-HHHhCchHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHH
Q 009951 346 WC-SDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAV 424 (521)
Q Consensus 346 ~i-ae~lGls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~ 424 (521)
+. ++++|+|+.+|||++|+++++.+..+++.+...|++++|.|+||+++|+++|+..+++++..++.++++.+++|+++
T Consensus 240 ~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 240 FGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred HHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 69999999999999999999988888888888899999999999999999999998887666666677789999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009951 425 GTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNV 495 (521)
Q Consensus 425 ~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~~~i 495 (521)
++..++++|+++|+++.+|++|+|+||+++++++.|.+.|+++++.|..++.++++|++++|+++++..+.
T Consensus 320 ~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~ 390 (558)
T PRK10669 320 AFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERY 390 (558)
T ss_pred HHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654
No 3
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=2.2e-42 Score=383.84 Aligned_cols=323 Identities=33% Similarity=0.507 Sum_probs=282.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHHH------HH-----------------------
Q 009951 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ----------------------- 217 (521)
Q Consensus 167 ~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~~------~q----------------------- 217 (521)
.++.++++++.++.+++++++|+|+|+++||+++|+++||++++++++. .|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~ 84 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLR 84 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5788899999999999999999999999999999999999999987521 11
Q ss_pred -----------------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHH
Q 009951 218 -----------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLF 274 (521)
Q Consensus 218 -----------------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~~il~ 274 (521)
++|+++..++++|++++.|||++++++++|++..++++||++++++++||+.+++++
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll 164 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPAL 164 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCch
Q 009951 275 ALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLS 354 (521)
Q Consensus 275 all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls 354 (521)
++++.+.+.......+.... ..++. ++..+++++++.+++++++.+ .+.+|.+.+.++.++++++++++++|+|
T Consensus 165 ~l~~~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~l~~vl~~a~l~~~~Gls 238 (601)
T PRK03659 165 ALVPLLAGSADEHFDWMKIG---MKVLA-FAGMLIGGRYLLRPLFRFIAA--SGVREVFTAAALLLVLGSALFMDALGLS 238 (601)
T ss_pred HHHHHHhcCCCcchHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHHHhCcc
Confidence 98887764332111122221 11222 233455678889999998875 3568888888888899999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 009951 355 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 434 (521)
Q Consensus 355 ~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~ 434 (521)
+.+|||+||++++++++++++.++++|++++|.|+||+++||++|+..+.+++..++.+++..+++|++++++.++++|+
T Consensus 239 ~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~ 318 (601)
T PRK03659 239 MALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGL 318 (601)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999998887776677777889999999999999999
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009951 435 SMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNV 495 (521)
Q Consensus 435 ~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~~~i 495 (521)
++++++.+|+.|+|+|||++++++.|.+.|+++++.|+.++.++++|++++|++.+.++++
T Consensus 319 ~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~ 379 (601)
T PRK03659 319 RSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKW 379 (601)
T ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999987664
No 4
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-41 Score=356.27 Aligned_cols=317 Identities=32% Similarity=0.535 Sum_probs=272.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHH-------HHH--------------------
Q 009951 165 DLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE-------LVQ-------------------- 217 (521)
Q Consensus 165 d~~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~-------~~q-------------------- 217 (521)
....+.++.+++.++.+.+++++|+|+|+++||+++|+++||.++..+.+ +.|
T Consensus 4 ~~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~ 83 (397)
T COG0475 4 LSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLK 83 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHH
Confidence 34688999999999999999999999999999999999999955543321 111
Q ss_pred --------------------------H--hcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHH
Q 009951 218 --------------------------L--CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCA 269 (521)
Q Consensus 218 --------------------------l--~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~ 269 (521)
+ +|+++..++++|.+++.||+++++++++|++..++++||.+++++++||+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~ 163 (397)
T COG0475 84 KVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIA 163 (397)
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 1 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 009951 270 VGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSD 349 (521)
Q Consensus 270 ~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae 349 (521)
.++++++.+.+.+.++.. .......+..+.+|.++...+++|+.+++.|+..+. +.+|.....++++++..++++|
T Consensus 164 ~i~lLai~~~l~~~g~~~--~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~--~~~e~~~~~~l~i~l~~a~l~e 239 (397)
T COG0475 164 AILLLAIVPALAGGGSGS--VGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT--ESSELFILFVLLLVLGAAYLAE 239 (397)
T ss_pred HHHHHHHHHHHccCCCcc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHH
Confidence 999999999887654331 111333445556666777777899999999999863 5788888999999999999999
Q ss_pred HhCchHHHHHHHHHHHhcCCCch-hhHHHhhhcHHH-HHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 350 KLGLSLELGSFMAGVMISTTDFA-KHTLDQVEPIRN-LFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTI 427 (521)
Q Consensus 350 ~lGls~~LGAFlAGl~ls~~~~~-~~l~~~le~i~~-~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l 427 (521)
.+|+|+++|||+||+++++.+++ |+++++++|+++ +|.|+||+++|+++|++.+.+++...+..+.+.+++|.+++++
T Consensus 240 ~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~ 319 (397)
T COG0475 240 LLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYL 319 (397)
T ss_pred HhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 799999999997 9999999999999999999999887778888899999999999
Q ss_pred HHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHH
Q 009951 428 VTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTP 486 (521)
Q Consensus 428 ~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~P 486 (521)
..+..|.++|++...|+.+.|+||++++.++.+.+ +.++++.+...+.++++++.+.|
T Consensus 320 ~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~ 377 (397)
T COG0475 320 AARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILP 377 (397)
T ss_pred HHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876 46777777666555444444444
No 5
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=336.77 Aligned_cols=334 Identities=31% Similarity=0.525 Sum_probs=300.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHH------HHH------------------
Q 009951 162 LQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------LVQ------------------ 217 (521)
Q Consensus 162 l~~d~~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~------~~q------------------ 217 (521)
+|||.+++..++.-+..++++|.+.+|+++|+.+||+++|++.||..-|++.+ ..|
T Consensus 1 m~h~tpli~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkd 80 (408)
T COG4651 1 MHHDTPLITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKD 80 (408)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHH
Confidence 57899999999999999999999999999999999999999999998777642 111
Q ss_pred ----------------------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHH
Q 009951 218 ----------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCA 269 (521)
Q Consensus 218 ----------------------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~ 269 (521)
++||++...+++|.++|.+||.+..|-++|++..+++.||+++|..+++|+.
T Consensus 81 LLavk~iAipgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~ 160 (408)
T COG4651 81 LLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLA 160 (408)
T ss_pred HhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHH
Confidence 6689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCc-----chhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHH
Q 009951 270 VGLLFALLPVLGGNSG-----LLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLS 344 (521)
Q Consensus 270 ~~il~all~~l~~~~~-----~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~ 344 (521)
.++.+.+.|++++--+ ..+....++..+.+...|+.++.+++|.+.||++.++.. .+++|++.+..+++++++
T Consensus 161 mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~--tGsrElf~L~vla~ALgV 238 (408)
T COG4651 161 MVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA--TGSRELFTLAVLAIALGV 238 (408)
T ss_pred HHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHH
Confidence 9998888888764211 111234556667788899999999999999999999986 468999999999999987
Q ss_pred HHH-HHHhCchHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHH
Q 009951 345 AWC-SDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTA 423 (521)
Q Consensus 345 ~~i-ae~lGls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l 423 (521)
++- ++.+|+|+.+|||.+|+++++++.+|+..+..-|++|.|..+||+++||..||..+.+++..++..+++.+.+|-+
T Consensus 239 a~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~ 318 (408)
T COG4651 239 AFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSV 318 (408)
T ss_pred hhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHH
Confidence 765 4678999999999999999999999999999999999999999999999999999998887777778888999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 009951 424 VGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMN 497 (521)
Q Consensus 424 ~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~~~i~~ 497 (521)
..+...+.+|++.|+++.++.+++|+|||+++++..+.+.+++++.--.+++...++|.+..|++++..+++.+
T Consensus 319 aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~~ 392 (408)
T COG4651 319 AAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQR 392 (408)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999888899999999999999999999887644
No 6
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=4.6e-41 Score=384.11 Aligned_cols=327 Identities=17% Similarity=0.291 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHH------------HH----H-------------
Q 009951 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------------LV----Q------------- 217 (521)
Q Consensus 167 ~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~------------~~----q------------- 217 (521)
.++.+++++++++.+++++++|+|+|.++|||++|+++||+++|.+++ .. +
T Consensus 43 ~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE 122 (832)
T PLN03159 43 LFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVE 122 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999999999999999987631 11 1
Q ss_pred -------------------------Hhc--------C------chHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHH
Q 009951 218 -------------------------LCG--------A------KLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQV 258 (521)
Q Consensus 218 -------------------------l~G--------~------~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~i 258 (521)
.+| + .....+++|++++.||+|+++|+|+|+++++++.||+
T Consensus 123 ~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~Grl 202 (832)
T PLN03159 123 MDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRI 202 (832)
T ss_pred CcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHH
Confidence 011 1 1224588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHH
Q 009951 259 TIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAV 338 (521)
Q Consensus 259 iL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~l 338 (521)
++++++++|++++++++++..+...+.. .. ...+.++..++|+++++++.|++.+|+.|+..+ ..+.+|.++.+++
T Consensus 203 aLsaavv~Dl~~~ilLav~~~l~~~~~~--~~-~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~-~~~~~e~~v~~il 278 (832)
T PLN03159 203 AMSAALVNDMCAWILLALAIALAENDST--SL-ASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPE-GETFSEFYICLIL 278 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc--ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-CCCcccchhHHHH
Confidence 9999999999999999888766543221 11 112233334455556666667777777776543 1234677777888
Q ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchhhHHHhhhcH-HHHHHHHHHHHhcchhhHHhHhHH--HHHHHHHHH
Q 009951 339 AFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPI-RNLFAALFLSSIGMLIHVHFLWNH--VDILLASVI 415 (521)
Q Consensus 339 al~~~~~~iae~lGls~~LGAFlAGl~ls~~~~~~~l~~~le~i-~~~f~piFF~~iGl~ld~~~l~~~--~~~il~lvl 415 (521)
+.+++++++++++|+|+++|||++|+++++.+.++++.++++++ .++|+|+||+++|+++|+..+.+. |..++.+++
T Consensus 279 ~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv 358 (832)
T PLN03159 279 TGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVII 358 (832)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHH
Confidence 88888999999999999999999999999887888899999998 599999999999999999888653 333445566
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-HHHHHHHHHHHHhhhh
Q 009951 416 LVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT-ALSLVTTPLLFKLIPN 494 (521)
Q Consensus 416 l~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~-vlS~i~~Pll~~~~~~ 494 (521)
+.+++|++++++.++++|+++|+++.+|+.|++||+++++++..|.+.|+++++.|++++.++ ++|.+++|++.+++++
T Consensus 359 ~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p 438 (832)
T PLN03159 359 MASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRP 438 (832)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCH
Confidence 778999999999999999999999999999999999999999999999999999999988655 5699999999888776
Q ss_pred hhh
Q 009951 495 VMN 497 (521)
Q Consensus 495 i~~ 497 (521)
-.+
T Consensus 439 ~rk 441 (832)
T PLN03159 439 ARR 441 (832)
T ss_pred Hhh
Confidence 443
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=5.1e-31 Score=291.25 Aligned_cols=328 Identities=16% Similarity=0.160 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchH--H--HH----H---------------------
Q 009951 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS--E--LV----Q--------------------- 217 (521)
Q Consensus 167 ~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~--~--~~----q--------------------- 217 (521)
.++..++++++++.+++.+++|+|+|.+++|+++|+++||+++|.++ + .. +
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~ 85 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRP 85 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHH
Confidence 57888999999999999999999999999999999999999988542 1 11 0
Q ss_pred --------------------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhccc-CCcchHHHHHHHHHHHHHHH
Q 009951 218 --------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAV 270 (521)
Q Consensus 218 --------------------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~-l~s~~g~iiL~~avl~Dv~~ 270 (521)
++|+++.+++++|+++++||++++.++++|.+. .+++.++++.+.+.+||.++
T Consensus 86 ~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~a 165 (562)
T PRK05326 86 ALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMA 165 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHH
Confidence 457899999999999999999999999999984 78899999999999999999
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 009951 271 GLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDK 350 (521)
Q Consensus 271 ~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~ 350 (521)
++++.++..+...+.....+..+...+......+++.+ +.+++..++.++++. ..++.+.+.+++.++.+++++++
T Consensus 166 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~-~~g~l~~~l~~~~~~---~~~~~~~i~~l~~~l~~~~~a~~ 241 (562)
T PRK05326 166 VFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGL-LGGWLLVQLLNRIAL---PAEGLYPILVLAGALLIFALTAA 241 (562)
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccC---chhhHHHHHHHHHHHHHHHHHHH
Confidence 88877665544322210122222222222222222223 334556666665531 23556777888888999999999
Q ss_pred hCchHHHHHHHHHHHhcCCC--chhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHH-HHHHHHHHHHHHHHHHH
Q 009951 351 LGLSLELGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDIL-LASVILVIIVKTAVGTI 427 (521)
Q Consensus 351 lGls~~LGAFlAGl~ls~~~--~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~i-l~lvll~vl~K~l~~~l 427 (521)
+|.|+.+|+|++|+++++.+ ..+++.+..+.+.+++.|+||+.+|+.+|++.+.+.+... +..+++.+++|++++++
T Consensus 242 lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l 321 (562)
T PRK05326 242 LGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFL 321 (562)
T ss_pred HCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 3344555666678899999999999999999887654333 33345677899999999
Q ss_pred HHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 009951 428 VTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEG-KMYLLLLGTTALSLVTTPLLFKLIPNVMNLG 499 (521)
Q Consensus 428 ~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~-e~~~lll~~~vlS~i~~Pll~~~~~~i~~~~ 499 (521)
..+.+++++|++..+|+. .+||+++++++..+...|+.+. +.+.++..++++|+++.+...+..-+.+++.
T Consensus 322 ~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l~l~ 393 (562)
T PRK05326 322 SLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKLGVV 393 (562)
T ss_pred HHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHcCCC
Confidence 999999999999999994 8999999999999999998864 5667777888889988887777665555543
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.97 E-value=6.3e-34 Score=298.56 Aligned_cols=314 Identities=25% Similarity=0.463 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHHH-H------H----------------------------
Q 009951 173 VVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL-V------Q---------------------------- 217 (521)
Q Consensus 173 ~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~~-~------q---------------------------- 217 (521)
+++++++.+++++++|+++|.++||+++|+++||.+++++++. . +
T Consensus 2 vlli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~ 81 (380)
T PF00999_consen 2 VLLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA 81 (380)
T ss_dssp ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred EEEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 3456667888889999999999999999999999998865421 1 0
Q ss_pred ------------------H----hcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 009951 218 ------------------L----CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFA 275 (521)
Q Consensus 218 ------------------l----~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~~il~a 275 (521)
. .|+++.+++++|.++++||++++.++++|++..+++.++++++.+++||+.+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~ 161 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLS 161 (380)
T ss_dssp --------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhh
Confidence 1 356889999999999999999999999888889999999999999999999998888
Q ss_pred HHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchH
Q 009951 276 LLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSL 355 (521)
Q Consensus 276 ll~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~ 355 (521)
+.....+.+... ........+. ..+...++..++.+|+.+++.+...+++|.....++++++..++++|++|.|+
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~ 236 (380)
T PF00999_consen 162 ILISLAQASGQS-SLGQLLLSFL----WIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEILGLSG 236 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhcccccc-cccchhcchh----hhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccccccccccc
Confidence 776654221111 1111111111 11122222335566666666654235677778888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHhhhcHH-HHHHHHHHHHhcchhhHHhHh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 356 ELGSFMAGVMISTTDFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLW---NHVDILLASVILVIIVKTAVGTIVTKL 431 (521)
Q Consensus 356 ~LGAFlAGl~ls~~~~~~~l~~~le~i~-~~f~piFF~~iGl~ld~~~l~---~~~~~il~lvll~vl~K~l~~~l~~~~ 431 (521)
.+|+|++|+++++.+.++++.++++++. ++|.|+||+++|+++|++.+. ..+...+.+++..+++|++++++..+.
T Consensus 237 ~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 316 (380)
T PF00999_consen 237 ILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRL 316 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhh
Confidence 9999999999998888888999999998 999999999999999998884 334445556666778999999999999
Q ss_pred hCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 432 FGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKL 491 (521)
Q Consensus 432 ~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~ 491 (521)
.|.++|+++.+|+++.+||+++++++..+.+.|.++++.+++++.++++|++++|+..+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~ 376 (380)
T PF00999_consen 317 FGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSP 376 (380)
T ss_dssp ------HHHHTTTTSS--HHHHHHHHHHHHH-----------------------------
T ss_pred cccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988775
No 9
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-28 Score=278.35 Aligned_cols=329 Identities=19% Similarity=0.291 Sum_probs=268.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHHHH------------H-----------------
Q 009951 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELV------------Q----------------- 217 (521)
Q Consensus 167 ~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~~~------------q----------------- 217 (521)
.++.++.++++++.++..+++++|||.++.++++|+++||+.++...... +
T Consensus 23 l~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~ 102 (769)
T KOG1650|consen 23 LLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLE 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999887653210 0
Q ss_pred -------------------------HhcC-------------------chHHHHHHHHHhhcccHHHHHHHHHhcccCCc
Q 009951 218 -------------------------LCGA-------------------KLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNA 253 (521)
Q Consensus 218 -------------------------l~G~-------------------~~~~al~iG~~ls~TStavv~~iL~e~~~l~s 253 (521)
..|. .+.+-.++....+.||.+++.++|.|.+++++
T Consensus 103 ~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~s 182 (769)
T KOG1650|consen 103 IDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNS 182 (769)
T ss_pred hhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhc
Confidence 0010 11256778888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHH
Q 009951 254 LHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELY 333 (521)
Q Consensus 254 ~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ 333 (521)
+.|++++++++++|++.|.++++..++.+.... ..... .+.+...++|++++..+.+....|+.|+. .++++.++.+
T Consensus 183 e~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~v~~p~~~wi~kr~-pe~~~~~~~~ 259 (769)
T KOG1650|consen 183 ELGRLALSAAVVNDVAGWILLALALAFSSELKL-SPLRS-VWDLVLVIGFVLFLFFVVRPLMKWIIKRT-PEGKPVSDAY 259 (769)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC-cchHH-HHHHHHHHHHHHheeeehhhhHHHHhhcC-CCCCccccce
Confidence 999999999999999999988887776654321 01111 22333444566666555666666766662 2233456667
Q ss_pred HHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHhcCC-CchhhHHHhhhcHH-HHHHHHHHHHhcchhhHHhHhHHHHHH
Q 009951 334 QLAAVAFCLLSAWCSDKLG-LSLELGSFMAGVMISTT-DFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDIL 410 (521)
Q Consensus 334 ll~~lal~~~~~~iae~lG-ls~~LGAFlAGl~ls~~-~~~~~l~~~le~i~-~~f~piFF~~iGl~ld~~~l~~~~~~i 410 (521)
....+...+..+.+++.++ +++.+|+|+.|+++++. |.+..+.+++|.+. ++|+|+||+..|++.|...+.. |...
T Consensus 260 ~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~-~~~~ 338 (769)
T KOG1650|consen 260 ICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK-WGAL 338 (769)
T ss_pred ehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH-HHHH
Confidence 7777787888888999988 89999999999999987 56788999999985 9999999999999999999887 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH-HHHHHHHHH
Q 009951 411 LASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTAL-SLVTTPLLF 489 (521)
Q Consensus 411 l~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vl-S~i~~Pll~ 489 (521)
...+....++|++++...+.+++.|+|+++.+|..|+++|.+++++...+.+.++++++.|.+++.++++ |.+++|++.
T Consensus 339 ~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~ 418 (769)
T KOG1650|consen 339 IRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLM 418 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHH
Confidence 6667778899999999999999999999999999999999999999999999999999999999877776 567778888
Q ss_pred Hhhhhhhhhh
Q 009951 490 KLIPNVMNLG 499 (521)
Q Consensus 490 ~~~~~i~~~~ 499 (521)
..+|+..+..
T Consensus 419 ~~y~p~~~~~ 428 (769)
T KOG1650|consen 419 FLYDPTRKYH 428 (769)
T ss_pred HhcchhhhcC
Confidence 8887765533
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.96 E-value=2.4e-27 Score=239.07 Aligned_cols=219 Identities=36% Similarity=0.595 Sum_probs=179.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHH------HHH---------------------------------
Q 009951 177 VSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------LVQ--------------------------------- 217 (521)
Q Consensus 177 ~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~------~~q--------------------------------- 217 (521)
+++.+.+.+++|+|+|.+++|+++|+++||+++|.+++ +.+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ 81 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999887642 100
Q ss_pred --------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009951 218 --------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGN 283 (521)
Q Consensus 218 --------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~ 283 (521)
++|+++.+++++|+++++||++++.++++|++..+++.|+++++.+++||+.+++++++...+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~ 161 (273)
T TIGR00932 82 VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATS 161 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457889999999999999999999999999999999999999999999999999999888766542
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Q 009951 284 SGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAG 363 (521)
Q Consensus 284 ~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGAFlAG 363 (521)
.+. +..+....+....++.++..++.++..+|+.|+..+. +.+|.....++.+++..++++|.+|+|+.+|||++|
T Consensus 162 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aG 237 (273)
T TIGR00932 162 AST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAEL--RPSELFTAGSLLLMFGSAYFADLLGLSMALGAFLAG 237 (273)
T ss_pred CCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 211 1122222232333334444566678888888887652 346777788888888999999999999999999999
Q ss_pred HHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhh
Q 009951 364 VMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIH 399 (521)
Q Consensus 364 l~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld 399 (521)
+++++.+..+++.++++++.++|.|+||+++|+++|
T Consensus 238 l~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 238 VVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 999998777889999999999999999999999986
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.87 E-value=2e-19 Score=201.09 Aligned_cols=289 Identities=14% Similarity=0.106 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHH------------HHH-------------------------
Q 009951 175 VIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------------LVQ------------------------- 217 (521)
Q Consensus 175 il~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~------------~~q------------------------- 217 (521)
+++.+.+..++-+|+.+|..+.++++|+++||.+++++++ +.+
T Consensus 22 lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrs 101 (810)
T TIGR00844 22 SSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVS 101 (810)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHH
Confidence 3344455555555999999999999999999998876541 111
Q ss_pred ----------------------H-hcCchHHHHHHHHHhhcccHHHHHHHHHhc--ccCCcchHHHHHHHHHHHHHHHHH
Q 009951 218 ----------------------L-CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQ--NSNNALHGQVTIGTLILQDCAVGL 272 (521)
Q Consensus 218 ----------------------l-~G~~~~~al~iG~~ls~TStavv~~iL~e~--~~l~s~~g~iiL~~avl~Dv~~~i 272 (521)
+ .|++|..|+++|+++++|.|+....+++.. .....++..++-+.+.+||.++.+
T Consensus 102 V~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL~~ESGlNDGlAfp 181 (810)
T TIGR00844 102 VTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLSCESGCNDGLAFP 181 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHHhhhhhcccHHHHH
Confidence 2 488999999999999999999888888732 124567788899999999999887
Q ss_pred HHHHHHHHhc--C-CcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 009951 273 LFALLPVLGG--N-SGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSD 349 (521)
Q Consensus 273 l~all~~l~~--~-~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae 349 (521)
++.+...+.. . ++.....+.+...+..+++-+++.+++| ++..++.++..+...-..|.++...++++++++.+++
T Consensus 182 fv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG-~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~ 260 (810)
T TIGR00844 182 FVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIG-YCGRKAIRFAEGKNIIDRESFLAFYLILALTCAGFGS 260 (810)
T ss_pred HHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 6655433321 1 1111001112222223333344445555 5677788877653322455556667778888888999
Q ss_pred HhCchHHHHHHHHHHHhcCCCc-hhh-HHHhhhc-HHHHHHHHHHHHhcchhhHHhHhH------HHHHHHHHHHHHHHH
Q 009951 350 KLGLSLELGSFMAGVMISTTDF-AKH-TLDQVEP-IRNLFAALFLSSIGMLIHVHFLWN------HVDILLASVILVIIV 420 (521)
Q Consensus 350 ~lGls~~LGAFlAGl~ls~~~~-~~~-l~~~le~-i~~~f~piFF~~iGl~ld~~~l~~------~~~~il~lvll~vl~ 420 (521)
.+|.|..+++|+||+++++... .++ ....+.. +..++...+|+.+|+.+.+..+.. .|..+++.+++.++.
T Consensus 261 lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVr 340 (810)
T TIGR00844 261 MLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLR 340 (810)
T ss_pred HhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998632 211 1122222 235888899999999998876643 234445556667788
Q ss_pred HHHHHHHHHHHh--CCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCC
Q 009951 421 KTAVGTIVTKLF--GYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHL 465 (521)
Q Consensus 421 K~l~~~l~~~~~--g~~~r~s~~lgl~L~~~GefslVlas~a~~~gi 465 (521)
|+.++++...+. ..++|+++++|+ ..+||.-+++++..|.+.+.
T Consensus 341 RPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 341 RIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 888887764443 368999999999 99999999999999987654
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.84 E-value=2.8e-18 Score=188.49 Aligned_cols=278 Identities=14% Similarity=0.171 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccc-h--H-HH----------HH---------------------
Q 009951 173 VVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKF-I--S-EL----------VQ--------------------- 217 (521)
Q Consensus 173 ~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLgl-I--~-~~----------~q--------------------- 217 (521)
..+++++.....+++|+++|..++++++|+++||...+. + + +. .+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la 83 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIA 83 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344555666778899999999999999999999764321 1 1 11 00
Q ss_pred -----------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 218 -----------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVL 280 (521)
Q Consensus 218 -----------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~~il~all~~l 280 (521)
+.|+++..++++|+++++|+++++.+++++.+ .+++..+++.+.+.+||..+++++.+...+
T Consensus 84 ~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf~~~~~~ 162 (525)
T TIGR00831 84 FLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVFAIAVAV 162 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHHHHHHHH
Confidence 34789999999999999999999999999975 467788999999999999999998887665
Q ss_pred hcCCcchhhHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHH
Q 009951 281 GGNSGLLQGMVS-MGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGS 359 (521)
Q Consensus 281 ~~~~~~~~~~~s-l~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGA 359 (521)
....+.. +... ....+...++.+++.++++ ++..++.|+. .+++......++++++..+.++|.+|.|+.+++
T Consensus 163 ~~~~~~~-~~~~~~~~f~~~~~~gi~vG~~~g-~~~~~l~~~~----~~~~~~~~~l~l~~~~~~y~lAe~lg~SgilAv 236 (525)
T TIGR00831 163 ALGKGVF-DPLNAALDFAVVCVGGIAAGLAVG-YLAYRLLRAK----IDDPLVEIALTILAPFAGFLLAERFHFSGVIAV 236 (525)
T ss_pred HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5322211 1111 1111111222233333333 3444444332 223444566788888899999999999999999
Q ss_pred HHHHHHhcCCCch----hhHHHhhhc----HHHHHHHHHHHHhcchhhHHh--HhHH----HH--H------HHHHHHHH
Q 009951 360 FMAGVMISTTDFA----KHTLDQVEP----IRNLFAALFLSSIGMLIHVHF--LWNH----VD--I------LLASVILV 417 (521)
Q Consensus 360 FlAGl~ls~~~~~----~~l~~~le~----i~~~f~piFF~~iGl~ld~~~--l~~~----~~--~------il~lvll~ 417 (521)
|++|+++++.... ++...+.+. +..++.+++|+.+|++++... .+.. +. . .+.+....
T Consensus 237 v~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 316 (525)
T TIGR00831 237 VAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVM 316 (525)
T ss_pred HHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999986321 222333333 346888999999999987421 1110 00 0 01111123
Q ss_pred HHHHHHHHHHHH--HH-----hCCChHHHHHHHHHHhhHHHHHHHHHH
Q 009951 418 IIVKTAVGTIVT--KL-----FGYSMRTSFLVGVSLAQIGEFAFVLLS 458 (521)
Q Consensus 418 vl~K~l~~~l~~--~~-----~g~~~r~s~~lgl~L~~~GefslVlas 458 (521)
...|++..+... +. .+.++|+.+.++| ...||.+++.++.
T Consensus 317 ~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al 363 (525)
T TIGR00831 317 TYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALAL 363 (525)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHH
Confidence 345554332211 11 2467899999999 7889999998774
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.2e-16 Score=171.48 Aligned_cols=292 Identities=17% Similarity=0.186 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchHH-------HH----------H------------
Q 009951 167 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE-------LV----------Q------------ 217 (521)
Q Consensus 167 ~li~~l~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~~-------~~----------q------------ 217 (521)
..+.+..+++..+...+.+.+|+..|.+..+++.|++.||.+++.+.. .. +
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~ 85 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRR 85 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHH
Confidence 466778888889999999999999999999999999999998776542 10 0
Q ss_pred -------------------------Hh--cCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHH
Q 009951 218 -------------------------LC--GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAV 270 (521)
Q Consensus 218 -------------------------l~--G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~ 270 (521)
++ ++++..++.+|+++++|+|.++.++.++.+ ...+...++.+.+.+||..+
T Consensus 86 ~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~g 164 (429)
T COG0025 86 VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGVG 164 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHHH
Confidence 23 678889999999999999999999999864 67789999999999999999
Q ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 009951 271 GLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDK 350 (521)
Q Consensus 271 ~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~ 350 (521)
++++.+........+..+........+....+.+++..+++ ++..++.+++.+++..+.......+++..+....++|.
T Consensus 165 iv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG-~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~~ 243 (429)
T COG0025 165 IVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLG-YLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEA 243 (429)
T ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99988776654422221111222222333333444445554 56677888877643334555667888899999999999
Q ss_pred hCchHHHHHHHHHHHhcCC---C-chhhHHHhhhcH----HHHHHHHHHHHhcchhhHHhHhHH-HHHHHHHHHHHHHHH
Q 009951 351 LGLSLELGSFMAGVMISTT---D-FAKHTLDQVEPI----RNLFAALFLSSIGMLIHVHFLWNH-VDILLASVILVIIVK 421 (521)
Q Consensus 351 lGls~~LGAFlAGl~ls~~---~-~~~~l~~~le~i----~~~f~piFF~~iGl~ld~~~l~~~-~~~il~lvll~vl~K 421 (521)
+|.|+.++..++|++.++. . ...+...+.+.+ .-++..+.|+.+|++++....... +..++..++.+++.|
T Consensus 244 l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R 323 (429)
T COG0025 244 LGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLAR 323 (429)
T ss_pred hCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999988521 1 111223333333 347788889999999999887765 455566778889999
Q ss_pred HHHHHHHHHHh------CCChHHHHHHHHHHhhHHHHHHHHHHHHh
Q 009951 422 TAVGTIVTKLF------GYSMRTSFLVGVSLAQIGEFAFVLLSRAS 461 (521)
Q Consensus 422 ~l~~~l~~~~~------g~~~r~s~~lgl~L~~~GefslVlas~a~ 461 (521)
++.++...+.. ..++++++++++ -++||..++.++....
T Consensus 324 ~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p 368 (429)
T COG0025 324 PLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIP 368 (429)
T ss_pred HHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHch
Confidence 99999998874 368899999999 8999999998886543
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.6e-17 Score=170.95 Aligned_cols=304 Identities=17% Similarity=0.199 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhCcCCccchH----HHHH-------------------------------
Q 009951 173 VVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS----ELVQ------------------------------- 217 (521)
Q Consensus 173 ~lil~~a~i~g~l~~rlglP~ivGyIlaGilLGPsgLglI~----~~~q------------------------------- 217 (521)
.+++.++.+...++.|+|.|..+-++..|++.|--|++-|+ ++.+
T Consensus 13 svlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~pal 92 (574)
T COG3263 13 SVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPAL 92 (574)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhH
Confidence 36677788888899999999999999999999999988654 1110
Q ss_pred --------------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHH-HHH
Q 009951 218 --------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLL-FAL 276 (521)
Q Consensus 218 --------------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~~il-~al 276 (521)
+++++|.+++++|+++.+|+.+.|..+|.+++ ++.+++.++--.+--||-+++++ +++
T Consensus 93 sLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmAvfLTitl 171 (574)
T COG3263 93 SLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMAVFLTITL 171 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCceeeehhHHH
Confidence 66889999999999999999999999998776 46677777777778899877654 455
Q ss_pred HHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHH
Q 009951 277 LPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLE 356 (521)
Q Consensus 277 l~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~ 356 (521)
+..++...+.. ++.-+. .++.-.++-++....+.++..++.++++ -.+.++.++.++..++...+++.+|-|+.
T Consensus 172 ieli~~get~l-~~~~ll-~f~~q~glG~l~G~~gg~l~~~~Inr~n----Ld~GL~pil~la~~Ll~fs~t~aiGGsG~ 245 (574)
T COG3263 172 IELIAGGETNL-SWGFLL-GFLQQFGLGLLLGLGGGKLLLQLINRIN----LDSGLYPILALAGGLLIFSLTGAIGGSGI 245 (574)
T ss_pred HHHHhcccccc-CHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHhhc----cccchhHHHHHHHHHHHHHHHHHhcCccc
Confidence 55555443322 111111 1222222222222223344445555542 24677888899999999999999999999
Q ss_pred HHHHHHHHHhcCCC--chhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Q 009951 357 LGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDI-LLASVILVIIVKTAVGTIVTKLFG 433 (521)
Q Consensus 357 LGAFlAGl~ls~~~--~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~-il~lvll~vl~K~l~~~l~~~~~g 433 (521)
++.+++|+.+.|.+ .++.+.+..+.+.++.-.+.|...|+.++|+.++..... ++..+.+.++.|++++|+...-++
T Consensus 246 LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~l~Pfr 325 (574)
T COG3263 246 LAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPFR 325 (574)
T ss_pred HHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHhhcccc
Confidence 99999999999986 457788888999999999999999999999999885433 345567788999999999999999
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHH-HHHHHHHHHHHHH
Q 009951 434 YSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMY-LLLLGTTALSLVT 484 (521)
Q Consensus 434 ~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~-~lll~~~vlS~i~ 484 (521)
+++||++.++| -.-||.+++++|....-.|.-+.++| ++.-.++++|.++
T Consensus 326 f~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlli 376 (574)
T COG3263 326 FNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLI 376 (574)
T ss_pred cCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHH
Confidence 99999999999 88999999999999998887776655 5655666667665
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.73 E-value=3.4e-15 Score=164.91 Aligned_cols=256 Identities=14% Similarity=0.180 Sum_probs=166.9
Q ss_pred cCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchhhHHHHHHH--
Q 009951 220 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNS-GLLQGMVSMGKL-- 296 (521)
Q Consensus 220 G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~-~~~~~~~sl~~~-- 296 (521)
++++.+++++|+++++|+|+.+..++++.+ .+.+.-.++.+.+.+||..+++++.+...+...+ +.. .+.++...
T Consensus 128 ~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~-~~~~~~~~i~ 205 (559)
T TIGR00840 128 DIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPV-TIVDVFEGCA 205 (559)
T ss_pred CCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHH
Confidence 358999999999999999999999999986 5678889999999999999999988776654321 111 11111111
Q ss_pred --HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC---Cc
Q 009951 297 --LLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT---DF 371 (521)
Q Consensus 297 --l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~---~~ 371 (521)
+...++.+++.+++| ++..++.|+... .+.....++++.+++.+.++|.+|.|+.++++++|+++++. +.
T Consensus 206 ~f~~~~~GGiliG~v~G-~l~~~l~r~~~~----~~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~ 280 (559)
T TIGR00840 206 SFFVVTCGGLLVGVVFG-FLVAFITRFTHH----IRQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANM 280 (559)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccC
Confidence 111122223333333 344455555432 23445566778888888999999999999999999999753 22
Q ss_pred hhhHHH----hhhcHHHHHHHHHHHHhcchhhHH-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHH
Q 009951 372 AKHTLD----QVEPIRNLFAALFLSSIGMLIHVH-FLWNHVDILLASVILVIIVKTAVGTIVTKL------FGYSMRTSF 440 (521)
Q Consensus 372 ~~~l~~----~le~i~~~f~piFF~~iGl~ld~~-~l~~~~~~il~lvll~vl~K~l~~~l~~~~------~g~~~r~s~ 440 (521)
.++..+ -.+.+..+...+.|+.+|+.+... ..+ .+..++..+++.++.|++.++...+. .+.++|+.+
T Consensus 281 s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~-~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~ 359 (559)
T TIGR00840 281 SRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEW-NWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQL 359 (559)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhh
Confidence 222222 233345677889999999976322 222 23333444455678898888776543 346899999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhCCCChHHHH-HHHHHHHHHHHHH
Q 009951 441 LVGVSLAQIGEFAFVLLSRASNLHLVEGKMY-LLLLGTTALSLVT 484 (521)
Q Consensus 441 ~lgl~L~~~GefslVlas~a~~~giIs~e~~-~lll~~~vlS~i~ 484 (521)
.+++ ...||.+++.++......+.-.++.. .+...++++|+++
T Consensus 360 il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tvlv 403 (559)
T TIGR00840 360 VIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIF 403 (559)
T ss_pred heee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHH
Confidence 9988 78899999988865433333233333 3333444445544
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.45 E-value=5e-11 Score=126.61 Aligned_cols=235 Identities=15% Similarity=0.184 Sum_probs=154.7
Q ss_pred HHhhcccHHHHHHHHHhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 009951 231 SFLSMSSTAVVVKFLVEQNSN-NALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSI 309 (521)
Q Consensus 231 ~~ls~TStavv~~iL~e~~~l-~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~v 309 (521)
.+-++|+.+....++...+.. ++.....+++.+++||+.+++++++.- ++ +. ++..+ ......+ ++.
T Consensus 130 ~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~-~i--~~~~L---~~a~~~~-~~l-- 197 (423)
T PRK14853 130 AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TS-EL--NLEAL---LLALVPL-ALF-- 197 (423)
T ss_pred hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CC-CC--CHHHH---HHHHHHH-HHH--
Confidence 344679999999999997754 778888999999999999988887643 22 11 22222 1111111 111
Q ss_pred HHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC------------CchhhHHH
Q 009951 310 LSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT------------DFAKHTLD 377 (521)
Q Consensus 310 v~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~------------~~~~~l~~ 377 (521)
+++++ .+.++......+ .+.+.+..++.|+|+.+|+|++|++++.. +..++++|
T Consensus 198 -------~~l~~-----~~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~ 263 (423)
T PRK14853 198 -------WLLVQ-----KRVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEH 263 (423)
T ss_pred -------HHHHH-----cCCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHH
Confidence 11121 123333333333 23445578999999999999999999852 11367888
Q ss_pred hhhcHH-HHHHHHH-HHHhcchhhH-HhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHH
Q 009951 378 QVEPIR-NLFAALF-LSSIGMLIHV-HFLWNHVD--ILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLV 442 (521)
Q Consensus 378 ~le~i~-~~f~piF-F~~iGl~ld~-~~l~~~~~--~il~lvll~vl~K~l~~~l~~~~~----------g~~~r~s~~l 442 (521)
+++|+. .+++|+| |+..|.++|. +.+.+... +.+.+++..+++|.++++..++.. +.+|++-.-+
T Consensus 264 ~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv 343 (423)
T PRK14853 264 RLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGV 343 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHH
Confidence 999986 6899999 9999999986 43423222 445667778899999988776642 2445555555
Q ss_pred HHHHhhHH-HHHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 443 GVSLAQIG-EFAFVLLSRASN-LHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 443 gl~L~~~G-efslVlas~a~~-~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
|+ ++.+| ..++-+++.|++ ....-++.-.-++..++++.+++-++.|..
T Consensus 344 ~~-L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~ 394 (423)
T PRK14853 344 AL-LAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLR 394 (423)
T ss_pred HH-HHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 78888 678888899984 222223333445567777888887777654
No 17
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.20 E-value=3.2e-09 Score=115.33 Aligned_cols=289 Identities=15% Similarity=0.146 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---ChHHHHHHHHHHhhCcC------Cccc-------hH----------HH-H---
Q 009951 167 RLISDLVVVIVSAAIGGIIFSCLG---QPVIVGYLLAGSIIGPG------GLKF-------IS----------EL-V--- 216 (521)
Q Consensus 167 ~li~~l~lil~~a~i~g~l~~rlg---lP~ivGyIlaGilLGPs------gLgl-------I~----------~~-~--- 216 (521)
--++-.+.+++++.+++|++++-| +|--+.-++-|+++|-. +.+- ++ +. .
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sg 114 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSG 114 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhccc
Confidence 356667778888999999999888 89988888888888832 1111 00 00 0
Q ss_pred ------H-----------------------------------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcch
Q 009951 217 ------Q-----------------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALH 255 (521)
Q Consensus 217 ------q-----------------------------------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~ 255 (521)
| ..++++.+++.+|+++|+|+|..++.+++|.+- +...
T Consensus 115 y~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v-d~~L 193 (575)
T KOG1965|consen 115 YSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV-DPKL 193 (575)
T ss_pred ceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC-Ccce
Confidence 0 124688999999999999999999999999863 4445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHH
Q 009951 256 GQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLS-IYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQ 334 (521)
Q Consensus 256 g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~-~fllv~~vv~~~~~~~llr~l~~~~~~~~El~l 334 (521)
-.++-|.+++||..+++++.....+...........+....++... +-..+...+| .+...+.|.+.-. ++..+..
T Consensus 194 y~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~G-lisA~~lK~~~l~--~~~~lE~ 270 (575)
T KOG1965|consen 194 YTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIG-LISALVLKFLYLR--RTPSLES 270 (575)
T ss_pred eeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc--CCcHHHH
Confidence 5688899999999999999887665543321111111222221111 1111111122 2222334444321 2333444
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC---C---chhhHHH-hhhcHHHHHHHHHHHHhcchh-hHHhHhHH
Q 009951 335 LAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT---D---FAKHTLD-QVEPIRNLFAALFLSSIGMLI-HVHFLWNH 406 (521)
Q Consensus 335 l~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~---~---~~~~l~~-~le~i~~~f~piFF~~iGl~l-d~~~l~~~ 406 (521)
..++.+....+.+||+.|+|+++..+.+|+.+++. . .++...+ ..+.+.-+..-+-|+++|+.+ +.......
T Consensus 271 al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~ 350 (575)
T KOG1965|consen 271 ALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYK 350 (575)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeee
Confidence 55666666777889999999999999999999974 1 1222222 233334455556699999633 33333322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhC----------CChHHHHHHHHHHhhHHHHHHHHHHH
Q 009951 407 -VDILLASVILVIIVKTAVGTIVTKLFG----------YSMRTSFLVGVSLAQIGEFAFVLLSR 459 (521)
Q Consensus 407 -~~~il~lvll~vl~K~l~~~l~~~~~g----------~~~r~s~~lgl~L~~~GefslVlas~ 459 (521)
..++....+++.++|..-.+-...+.. .+.+.-..+.+.=.-||..++.++..
T Consensus 351 ~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~ 414 (575)
T KOG1965|consen 351 SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALG 414 (575)
T ss_pred chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhh
Confidence 234445556667777766555544432 23334455555545789888888754
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.15 E-value=1.6e-09 Score=110.06 Aligned_cols=239 Identities=15% Similarity=0.128 Sum_probs=156.5
Q ss_pred cCchHHHHHHHHHhhcccHHHHHHHHHhccc---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---hhhHHHH
Q 009951 220 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS---NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGL---LQGMVSM 293 (521)
Q Consensus 220 G~~~~~al~iG~~ls~TStavv~~iL~e~~~---l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~---~~~~~sl 293 (521)
+++...++.+++|+++|+|.....+..+.+. ...+...++.+.+-.||.++++++-+...+...... ...|. .
T Consensus 127 ~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv-~ 205 (467)
T KOG4505|consen 127 NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWV-C 205 (467)
T ss_pred cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCcee-h
Confidence 4677899999999999999988888776543 334555677889999999999887665554322111 01221 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCC-ch
Q 009951 294 GKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-FA 372 (521)
Q Consensus 294 ~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~-~~ 372 (521)
..++.-....+++..++| ++....+|+-.+.+--++|.++..-+++.+.+.++.+.+|++-.+-.|.||++++=.+ +.
T Consensus 206 ~~iLyec~fg~llG~vIG-~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFs 284 (467)
T KOG4505|consen 206 DNILYECFFGCLLGCVIG-YLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFS 284 (467)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhh
Confidence 112221111122223333 4555556655543335788888888889999999999999999999999999998542 33
Q ss_pred hhHH-HhhhcHHH-HHHHHHHHHhcchhhHHhHhHH------HHHHHHHHHHHHHHHHHHHHHHHH-Hh--CCChHHHHH
Q 009951 373 KHTL-DQVEPIRN-LFAALFLSSIGMLIHVHFLWNH------VDILLASVILVIIVKTAVGTIVTK-LF--GYSMRTSFL 441 (521)
Q Consensus 373 ~~l~-~~le~i~~-~f~piFF~~iGl~ld~~~l~~~------~~~il~lvll~vl~K~l~~~l~~~-~~--g~~~r~s~~ 441 (521)
++.. .++..+.| ++.-.||...|..++++..... |.. +++.++.++.|-+.+....+ .. =.+|||++.
T Consensus 285 k~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrl-vilsi~iif~RRip~v~l~kp~iPdikswkEALF 363 (467)
T KOG4505|consen 285 KKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRL-VILSITIIFIRRIPAVYLMKPLIPDIKSWKEALF 363 (467)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHH-HHHHHHHHHhcccceEEEeccCCcchhhHHHHHH
Confidence 3333 34666654 7788899999999999877543 222 33333444444433332223 22 146999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhh
Q 009951 442 VGVSLAQIGEFAFVLLSRASN 462 (521)
Q Consensus 442 lgl~L~~~GefslVlas~a~~ 462 (521)
+|. ..|+|.=++..+-.|..
T Consensus 364 vGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 364 VGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred hcc-CCCccHHHHHHHHHHHh
Confidence 999 99999877777766653
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=98.90 E-value=1.7e-07 Score=98.40 Aligned_cols=201 Identities=20% Similarity=0.204 Sum_probs=121.6
Q ss_pred cccHHHHHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 235 MSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWS 313 (521)
Q Consensus 235 ~TStavv~~iL~e~~~-l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~ 313 (521)
+|+++...-++.=.+. .....-..+++.+++||+.++++.++. .++ +. ++. ........+ .+.
T Consensus 124 ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~F---Yt~-~i--~~~---~L~~a~~~~-~~l------ 187 (373)
T TIGR00773 124 ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALF---YTN-DL--SMA---ALLVAAVAI-AVL------ 187 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeee---cCC-CC--CHH---HHHHHHHHH-HHH------
Confidence 4566655555544432 333345667899999999988776643 222 11 111 111111111 111
Q ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCC-c----hhhHHHhhhcHH-HHHH
Q 009951 314 FVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-F----AKHTLDQVEPIR-NLFA 387 (521)
Q Consensus 314 ~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~-~----~~~l~~~le~i~-~~f~ 387 (521)
+++++. +.++......+.+++ .+.....|+|+.+|++++|++++..+ . .+++++.++|.. .++.
T Consensus 188 ---~~~~~~-----~v~~~~~y~~lgvll--W~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lil 257 (373)
T TIGR00773 188 ---AVLNRC-----GVRRLGPYMLVGVIL--WFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLIL 257 (373)
T ss_pred ---HHHHHc-----CCchhhHHHHHHHHH--HHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 122222 234443333333322 22237899999999999999999752 1 355666677766 5688
Q ss_pred HHH-HHHhcchhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-HHHH
Q 009951 388 ALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG-EFAF 454 (521)
Q Consensus 388 piF-F~~iGl~ld~~~l~~~-~~~il~lvll~vl~K~l~~~l~~~~~----------g~~~r~s~~lgl~L~~~G-efsl 454 (521)
|+| |+..|.++|...+... ....+.+++..+++|.++++..++.. +.+|++-.-+|+ ++.+| ..++
T Consensus 258 PlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~-L~GIGFTmSl 336 (373)
T TIGR00773 258 PLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV-LCGIGFTMSI 336 (373)
T ss_pred HHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHH
Confidence 999 9999999986543221 12345566778899999998887752 345565555555 78888 6778
Q ss_pred HHHHHHhh
Q 009951 455 VLLSRASN 462 (521)
Q Consensus 455 Vlas~a~~ 462 (521)
-+++.|+.
T Consensus 337 fI~~LAf~ 344 (373)
T TIGR00773 337 FIASLAFG 344 (373)
T ss_pred HHHHHhcC
Confidence 88888884
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.41 E-value=2.4e-05 Score=83.69 Aligned_cols=231 Identities=16% Similarity=0.174 Sum_probs=135.5
Q ss_pred hcccHHHHHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 234 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 312 (521)
Q Consensus 234 s~TStavv~~iL~e~~~-l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~ 312 (521)
.+|+++...-++.=.+. .....-..+++.+++||+.+++++++. .++ +. .+. ..+....++. +.
T Consensus 138 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF---Yt~-~i--~~~---~L~~a~~~~~-~l----- 202 (438)
T PRK14856 138 MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALF---YTT-NL--KFA---WLLGALGVVL-VL----- 202 (438)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee---cCC-CC--cHH---HHHHHHHHHH-HH-----
Confidence 34666666666654432 233444667899999999988777643 222 21 111 2222211111 11
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHhcCCCc--------------------
Q 009951 313 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTTDF-------------------- 371 (521)
Q Consensus 313 ~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~ia-e~lGls~~LGAFlAGl~ls~~~~-------------------- 371 (521)
++.++. +.+.......+.+ +.|.+ ..-|+|+.++..+.|++++..+.
T Consensus 203 ----~~ln~~-----~v~~~~~Y~~~G~---~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~ 270 (438)
T PRK14856 203 ----AVLNRL-----NVRSLIPYLLLGV---LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSS 270 (438)
T ss_pred ----HHHHHc-----CCccccHHHHHHH---HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccc
Confidence 122222 1222222222332 23443 46799999999999999986421
Q ss_pred -------------------------hhhHHHhhhcHHH-HHHHHH-HHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHH
Q 009951 372 -------------------------AKHTLDQVEPIRN-LFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAV 424 (521)
Q Consensus 372 -------------------------~~~l~~~le~i~~-~f~piF-F~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~ 424 (521)
.+++++.+.|... +.+|+| |+..|..++.+.......+.+.+++..+++|.++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lG 350 (438)
T PRK14856 271 GALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLG 350 (438)
T ss_pred ccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHH
Confidence 1234445555554 779999 8999999986532221234456667788999999
Q ss_pred HHHHHHHh----------CCChHHHHHHHHHHhhHH-HHHHHHHHHHhhC--CCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 425 GTIVTKLF----------GYSMRTSFLVGVSLAQIG-EFAFVLLSRASNL--HLVEGKMYLLLLGTTALSLVTTPLLFKL 491 (521)
Q Consensus 425 ~~l~~~~~----------g~~~r~s~~lgl~L~~~G-efslVlas~a~~~--giIs~e~~~lll~~~vlS~i~~Pll~~~ 491 (521)
++..++.. +.+|++=.-+|+ ++.+| ..++-+++.|++. ...-++.-.-++..++++.+++-++.|+
T Consensus 351 I~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L~~ 429 (438)
T PRK14856 351 IFLITFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLFA 429 (438)
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877642 244555555555 78888 6788888888843 3223344444556777788888777775
Q ss_pred h
Q 009951 492 I 492 (521)
Q Consensus 492 ~ 492 (521)
.
T Consensus 430 ~ 430 (438)
T PRK14856 430 L 430 (438)
T ss_pred c
Confidence 4
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.25 E-value=0.00013 Score=77.14 Aligned_cols=230 Identities=18% Similarity=0.151 Sum_probs=132.5
Q ss_pred hcccHHHHHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 234 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 312 (521)
Q Consensus 234 s~TStavv~~iL~e~~~-l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~ 312 (521)
.+|+++...-++.=.+. .....-..+++.+++||+.++++.++. .++ +. .+. ........+. +.
T Consensus 130 mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~F---Yt~-~i--~~~---~L~~a~~~~~-~l----- 194 (389)
T PRK09560 130 AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALF---YTS-DL--SLP---ALALAAIAIA-VL----- 194 (389)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee---cCC-CC--CHH---HHHHHHHHHH-HH-----
Confidence 34666666666654332 233345567899999999988776643 222 11 111 1222211111 11
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHhcCCCc-------hhhHHHhhhcHHH
Q 009951 313 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTTDF-------AKHTLDQVEPIRN 384 (521)
Q Consensus 313 ~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~ia-e~lGls~~LGAFlAGl~ls~~~~-------~~~l~~~le~i~~ 384 (521)
++.++. +.+.......+.+ ..|.+ ..-|+|+.++.-+.|++++..+. .+++++.++|...
T Consensus 195 ----~~ln~~-----~v~~~~~Y~~~G~---~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~ 262 (389)
T PRK09560 195 ----FLLNRL-----GVTKLTPYLIVGA---ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVA 262 (389)
T ss_pred ----HHHHHc-----CCccchHHHHHHH---HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhh
Confidence 112222 1233322223332 23443 45799999999999999997421 2567778888876
Q ss_pred HH-HHHH-HHHhcchhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-
Q 009951 385 LF-AALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG- 450 (521)
Q Consensus 385 ~f-~piF-F~~iGl~ld~~~l~~~-~~~il~lvll~vl~K~l~~~l~~~~~----------g~~~r~s~~lgl~L~~~G- 450 (521)
++ +|+| |+..|..++-..+... ....+.+.+..+++|.++++..++.. +.+|++=.-+|+ ++.+|
T Consensus 263 ~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGF 341 (389)
T PRK09560 263 FAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV-LCGIGF 341 (389)
T ss_pred hhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHH
Confidence 55 9999 8999999943222221 12345666778899999988877642 244555555555 77888
Q ss_pred HHHHHHHHHHhh-CCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 451 EFAFVLLSRASN-LHLVEGKMYLLLLGTTALSLVTTPLLFKL 491 (521)
Q Consensus 451 efslVlas~a~~-~giIs~e~~~lll~~~vlS~i~~Pll~~~ 491 (521)
..++-+++.|+. .+...++.-.-++..++++.+++-++.|.
T Consensus 342 TmSLFIa~LAF~~~~~~~~~aKigIL~~S~~aai~g~~~l~~ 383 (389)
T PRK09560 342 TMSLFIGSLAFGASEELLTEARLGILLGSLLSAILGYLLLRL 383 (389)
T ss_pred HHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888884 21222233333445556666666555543
No 22
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.22 E-value=0.00012 Score=78.05 Aligned_cols=227 Identities=16% Similarity=0.116 Sum_probs=129.8
Q ss_pred hcccHHHHHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 234 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 312 (521)
Q Consensus 234 s~TStavv~~iL~e~~~-l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~ 312 (521)
.+|+++...-++.=.+. .....-..+++.+++||+.++++.++. .++ +. .+. ......+.+. +.
T Consensus 133 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF---Yt~-~i--~~~---~L~~a~~~~~-~l----- 197 (423)
T PRK14855 133 MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALF---YTS-GL--NLL---ALLLAALTWA-LA----- 197 (423)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEee---cCC-CC--CHH---HHHHHHHHHH-HH-----
Confidence 35666766666655442 223344667899999999988776543 222 11 111 1121111111 11
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHhcCC-C-c------------------
Q 009951 313 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTT-D-F------------------ 371 (521)
Q Consensus 313 ~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~ia-e~lGls~~LGAFlAGl~ls~~-~-~------------------ 371 (521)
+++++. +.+.......+.+ +.|.+ ..-|+|+.++..+.|++++.. + .
T Consensus 198 ----~~ln~~-----~v~~~~~Y~~~G~---~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~ 265 (423)
T PRK14855 198 ----LLAGRL-----GVTSLKIYAVLGA---LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEV 265 (423)
T ss_pred ----HHHHHc-----CCccccHHHHHHH---HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchh
Confidence 122222 1232222222232 23443 467999999999999999874 1 1
Q ss_pred ------------------hhhHHHhhhcHHH-HHHHHH-HHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 372 ------------------AKHTLDQVEPIRN-LFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 431 (521)
Q Consensus 372 ------------------~~~l~~~le~i~~-~f~piF-F~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~ 431 (521)
.+++++.++|... +.+|+| |+..|..++-.. .. .+.+.+++..+++|.++++..++.
T Consensus 266 ~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~--pv~lGI~~GLvvGK~lGI~~~s~l 342 (423)
T PRK14855 266 VGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG--TVSLGVFLGLLLGKPLGVVGGAWL 342 (423)
T ss_pred hhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC--cHHHHHHHHHHhcchHHHHHHHHH
Confidence 1345555666654 579999 899999994332 11 234556667788999998887764
Q ss_pred h----------CCChHHHHHHHHHHhhHH-HHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 432 F----------GYSMRTSFLVGVSLAQIG-EFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKL 491 (521)
Q Consensus 432 ~----------g~~~r~s~~lgl~L~~~G-efslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~ 491 (521)
. +.+|++=.-+|+ ++.+| ..++-+++.|++.+-.-++.-.-++..++++.+++-++.|.
T Consensus 343 avkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L~~ 412 (423)
T PRK14855 343 AVRLGLASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWLWW 412 (423)
T ss_pred HHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 345555555555 78888 67788888888533222333334445556666666555543
No 23
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.19 E-value=0.00019 Score=75.83 Aligned_cols=230 Identities=20% Similarity=0.177 Sum_probs=131.6
Q ss_pred hcccHHHHHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 234 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 312 (521)
Q Consensus 234 s~TStavv~~iL~e~~~-l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~ 312 (521)
.+|+++...-++.=.+. .....-..+++.+++||+.++++.++. .++ +. ++.. .......+. +.
T Consensus 130 ~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF---Yt~-~i--~~~~---L~~a~~~~~-~l----- 194 (388)
T PRK09561 130 AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALF---YTS-DL--SMVS---LGVAAVAIA-VL----- 194 (388)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee---cCC-Cc--cHHH---HHHHHHHHH-HH-----
Confidence 34666666666544432 233345567899999999988777643 222 11 1211 111111111 10
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH-HHHhCchHHHHHHHHHHHhcCCC-----chhhHHHhhhcHHHH-
Q 009951 313 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWC-SDKLGLSLELGSFMAGVMISTTD-----FAKHTLDQVEPIRNL- 385 (521)
Q Consensus 313 ~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~i-ae~lGls~~LGAFlAGl~ls~~~-----~~~~l~~~le~i~~~- 385 (521)
++.++. +.+.......+.+ ..|. ...-|+|+.++..+.|++++..+ ..+++++.++|...+
T Consensus 195 ----~~ln~~-----~v~~~~~Y~~~G~---~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~ 262 (388)
T PRK09561 195 ----AVLNLC-----GVRRTSVYILVGV---VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFL 262 (388)
T ss_pred ----HHHHHc-----CCccchHHHHHHH---HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhe
Confidence 112222 1233322223332 2244 34679999999999999999742 135678888888754
Q ss_pred HHHHH-HHHhcchhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-HH
Q 009951 386 FAALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG-EF 452 (521)
Q Consensus 386 f~piF-F~~iGl~ld~~~l~~~-~~~il~lvll~vl~K~l~~~l~~~~~----------g~~~r~s~~lgl~L~~~G-ef 452 (521)
.+|+| |+..|..++-..+... ..+.+.+.+..+++|.++++..++.. +.+|++-.-+|+ ++.+| ..
T Consensus 263 IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTm 341 (388)
T PRK09561 263 ILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV-LCGIGFTM 341 (388)
T ss_pred eHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHH
Confidence 79999 8999999842222211 12345666677889999988877642 245555555555 78888 67
Q ss_pred HHHHHHHHhhC--CCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 453 AFVLLSRASNL--HLVEGKMYLLLLGTTALSLVTTPLLFKL 491 (521)
Q Consensus 453 slVlas~a~~~--giIs~e~~~lll~~~vlS~i~~Pll~~~ 491 (521)
++-+++.|++. ...-++.-.-++..++++.+++-++.|.
T Consensus 342 SLFIa~LAF~~~~~~~~~~aKigIL~~S~~sai~g~~~l~~ 382 (388)
T PRK09561 342 SIFIASLAFGGVDPELINYAKLGILIGSLLSAVIGYSWLRK 382 (388)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888842 1112222233444566666666555544
No 24
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.15 E-value=0.00031 Score=74.00 Aligned_cols=233 Identities=17% Similarity=0.175 Sum_probs=132.1
Q ss_pred hcccHHHHHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 234 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 312 (521)
Q Consensus 234 s~TStavv~~iL~e~~~-l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~ 312 (521)
.+|+++...-++.=.+. .....--.+++.+++||+.++++.++. .++ +. ++.. ...... .+ .++
T Consensus 126 ~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlF---Yt~-~i--~~~~---L~~A~~---~~-~~l-- 190 (383)
T PRK14854 126 SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIF---YTK-SL--SLLS---LSLGTL---FI-LAM-- 190 (383)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee---cCC-Cc--cHHH---HHHHHH---HH-HHH--
Confidence 34666665555554432 233344556788999999988776643 222 11 1211 111111 11 000
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCC-----chhhHHHhhhcHH-HHH
Q 009951 313 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-----FAKHTLDQVEPIR-NLF 386 (521)
Q Consensus 313 ~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~-----~~~~l~~~le~i~-~~f 386 (521)
...++.. +.+.......+.++ .=+....-|+|+.++..+.|++++..+ ..+++++.++|.. -+.
T Consensus 191 ----~~~nr~~----~v~~~~~Y~~~G~~--lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~I 260 (383)
T PRK14854 191 ----IICNRIF----KINRSSVYVVLGFF--AWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFI 260 (383)
T ss_pred ----HHHHHhc----CCceehHHHHHHHH--HHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhh
Confidence 1122211 12222222222222 222345689999999999999999742 1356778888876 577
Q ss_pred HHHH-HHHhcchhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-HHH
Q 009951 387 AALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG-EFA 453 (521)
Q Consensus 387 ~piF-F~~iGl~ld~~~l~~~-~~~il~lvll~vl~K~l~~~l~~~~~----------g~~~r~s~~lgl~L~~~G-efs 453 (521)
+|+| |+..|..++-..+... ....+.+.+..+++|.++++..++.. +.+|++-.-+|+ ++.+| ..+
T Consensus 261 lPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmS 339 (383)
T PRK14854 261 LPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-LCGIGFTMS 339 (383)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 8999 8999999943222211 12345666677889999988877642 244555555555 78888 677
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 454 FVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 454 lVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
+-+++.|++....-++.-.-++..++++.+++-.+.|..
T Consensus 340 LFIa~LAF~~~~~~~~aKigIL~gS~~aai~G~~~l~~~ 378 (383)
T PRK14854 340 LFIGVLAFNDTHLLNAIKIGVVVGSVLSGFFGYIVLRFI 378 (383)
T ss_pred HHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899885322223333344455666777776666543
No 25
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.80 E-value=9.1e-05 Score=78.06 Aligned_cols=219 Identities=19% Similarity=0.214 Sum_probs=113.8
Q ss_pred hcccHHHHHHHHHhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 234 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 312 (521)
Q Consensus 234 s~TStavv~~iL~e~~~-l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~ 312 (521)
..|+++...-++.=.+. .....-..+++.+++||+.++++.++.- ++ + .+..........+ ++.
T Consensus 126 ~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FY---t~-~-----i~~~~L~~a~~~~-~~l----- 190 (378)
T PF06965_consen 126 MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFY---TD-G-----ISLLWLLLAAAAL-LLL----- 190 (378)
T ss_dssp S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------------HHHHHHHHHHH-HHH-----
T ss_pred ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeee---CC-C-----CCHHHHHHHHHHH-HHH-----
Confidence 45777777777654432 2233446788999999999988776542 11 1 1121222111111 111
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHhcCCCch---------hhHHHhhhcH
Q 009951 313 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTTDFA---------KHTLDQVEPI 382 (521)
Q Consensus 313 ~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~ia-e~lGls~~LGAFlAGl~ls~~~~~---------~~l~~~le~i 382 (521)
+.+++.. .+.......+.+ ..|.+ ..-|+|+.++..+.|++++..+.. +++++.++|.
T Consensus 191 ----~~l~r~~-----v~~~~~Y~~~G~---~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~ 258 (378)
T PF06965_consen 191 ----FVLNRLG-----VRSLWPYLLLGI---LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPW 258 (378)
T ss_dssp ----HHHHHTT--------THHHHHHHH---HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHH
T ss_pred ----HHHHHCC-----CceehHHHHHHH---HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhh
Confidence 1122221 222222222222 23444 457999999999999999986432 4677778887
Q ss_pred HH-HHHHHH-HHHhcchhhHHhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhH
Q 009951 383 RN-LFAALF-LSSIGMLIHVHFLWNHV-DILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQI 449 (521)
Q Consensus 383 ~~-~f~piF-F~~iGl~ld~~~l~~~~-~~il~lvll~vl~K~l~~~l~~~~~----------g~~~r~s~~lgl~L~~~ 449 (521)
.+ +.+|+| |+..|..++-..+.... .+.+.+++..+++|.++++..++.. +.+|++=.-+|+ ++.+
T Consensus 259 v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~-LaGI 337 (378)
T PF06965_consen 259 VAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL-LAGI 337 (378)
T ss_dssp HHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH-HTT-
T ss_pred hhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHH
Confidence 65 558999 89999999865543221 2234556667889999988876642 233443334454 7777
Q ss_pred H-HHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q 009951 450 G-EFAFVLLSRASNLHLVEGKMYLLLLGTTAL 480 (521)
Q Consensus 450 G-efslVlas~a~~~giIs~e~~~lll~~~vl 480 (521)
| ..++-+++.|++.....++.-.-++..+++
T Consensus 338 GFTmSLFIa~LAF~~~~~~~~aK~gIL~~S~~ 369 (378)
T PF06965_consen 338 GFTMSLFIAGLAFDDPALQNAAKLGILIGSLL 369 (378)
T ss_dssp -HHHHHHHHHHHSTT-SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHHHHHHH
Confidence 7 678889999987644444433333333333
No 26
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.0031 Score=64.94 Aligned_cols=229 Identities=16% Similarity=0.177 Sum_probs=131.9
Q ss_pred hcccHHHHHHHHHhcc-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 234 SMSSTAVVVKFLVEQN-SNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 312 (521)
Q Consensus 234 s~TStavv~~iL~e~~-~l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~ 312 (521)
++|+++...-++.=.+ ...+..--.+++.+++||+-++++.++.- +++- ++..+ .. +++.+..++
T Consensus 133 ~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFY---t~~L---s~~al---~~---a~~~i~vL~-- 198 (390)
T COG3004 133 MATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFY---TTDL---SMAAL---GI---AALAIAVLA-- 198 (390)
T ss_pred cHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhh---cCCc---cHHHH---HH---HHHHHHHHH--
Confidence 4466666666665543 23344555678999999998887776532 2211 11111 11 111111111
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHhcCCC-----chhhHHHhhhcHH-HH
Q 009951 313 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTTD-----FAKHTLDQVEPIR-NL 385 (521)
Q Consensus 313 ~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~ia-e~lGls~~LGAFlAGl~ls~~~-----~~~~l~~~le~i~-~~ 385 (521)
.+.+++ .+.+.....+..++ |++ .+-|+|..++.-+.|++++-.. .-|++++.+.|.. -+
T Consensus 199 -----~lN~~~-----v~~l~~Y~~~gviL---W~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~ 265 (390)
T COG3004 199 -----VLNRLG-----VRRLSPYLLVGVIL---WIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFF 265 (390)
T ss_pred -----HHHHhC-----chhhhHHHHHHHHH---HHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHH
Confidence 122221 11111122222222 333 4679999999999999998542 2356777777765 46
Q ss_pred HHHHH-HHHhcchhh---HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-
Q 009951 386 FAALF-LSSIGMLIH---VHFLWNHVDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG- 450 (521)
Q Consensus 386 f~piF-F~~iGl~ld---~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~----------g~~~r~s~~lgl~L~~~G- 450 (521)
.+|+| |+..|.++. ...+.. .+.+.+++..+++|.++++..++.. +.+|+.-.-+++ ++.+|
T Consensus 266 IlPlFaFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIGF 342 (390)
T COG3004 266 ILPLFAFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIGF 342 (390)
T ss_pred HHHHHHHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhhH
Confidence 78999 899999887 333332 2235556677889999888877642 234444434444 77777
Q ss_pred HHHHHHHHHHhhCC-CChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 451 EFAFVLLSRASNLH-LVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 451 efslVlas~a~~~g-iIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
..++-+++.|+... ..+...-.-++..+.+|.+++-...|..
T Consensus 343 TMSlFI~~LAf~~~~~~~~~~klgIL~gS~~Sai~G~~~L~~~ 385 (390)
T COG3004 343 TMSLFIASLAFGSEDELQTAAKLGILVGSFISAILGYSYLRLL 385 (390)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888887542 3333333445566677777776666654
No 27
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=97.35 E-value=0.018 Score=58.14 Aligned_cols=133 Identities=21% Similarity=0.384 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhcCCCch-hhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHH
Q 009951 341 CLLSAWCSDKLGLSLELGSFMAGVMISTTDFA-KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVII 419 (521)
Q Consensus 341 ~~~~~~iae~lGls~~LGAFlAGl~ls~~~~~-~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl 419 (521)
......++++++++..++..++|++++..-.. -+-.+.++.+.++-..++....|+++|++.+.+++.-........++
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~ 83 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVL 83 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999865221 01124566777888888999999999999998875433332222222
Q ss_pred HH-HHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 009951 420 VK-TAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL 475 (521)
Q Consensus 420 ~K-~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll 475 (521)
.- ++.++...++++.++.+++.+|..+++-+. + ++...-.+.+..+.+.-.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~-~-v~~~il~~~~~~~~~~g~l~l 138 (273)
T TIGR00932 84 VPGVLLGLLLGHLLGLALGAAVVIGIILALSST-A-VVVQVLKERGLLKTPFGQTVL 138 (273)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH-H-HHHHHHHHcCcccChHHHHHH
Confidence 33 344455567789999999999998887652 2 333344556665544443333
No 28
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.28 E-value=0.019 Score=65.13 Aligned_cols=130 Identities=18% Similarity=0.288 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchh-hHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHH
Q 009951 336 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASV 414 (521)
Q Consensus 336 ~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~~~~-~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lv 414 (521)
..++...+...++..++++.++|=.++|+++...-..- +-.+.++.+.++-..++.+.+|+.+|+..++.....++..-
T Consensus 12 ~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g 91 (621)
T PRK03562 12 IYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGG 91 (621)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 34455566778889999999999999999998642210 11345777889999999999999999999987654333322
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCh
Q 009951 415 ILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVE 467 (521)
Q Consensus 415 ll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs 467 (521)
.+-++.-++..+...+++|.++..++.+|..++.-+. +++ ...-.+.+.++
T Consensus 92 ~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-aiv-~~~L~e~~~l~ 142 (621)
T PRK03562 92 ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AIA-MQAMNERNLMV 142 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HHH-HHHHHHhcccc
Confidence 2222223344445567789999999999988776653 333 33333444433
No 29
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.16 E-value=0.0097 Score=61.45 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=92.1
Q ss_pred HHHHHHHHH--hCchHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHH
Q 009951 342 LLSAWCSDK--LGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVII 419 (521)
Q Consensus 342 ~~~~~iae~--lGls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl 419 (521)
++.+++++. ..+...+=+++.|+++.|.+. +..+..++=..+.+|+|-+..|+++|++.+.+.....+.+.++++.
T Consensus 153 Lga~gLA~ip~~~lv~lilpILiGmilGNld~--~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~ 230 (312)
T PRK12460 153 LGAAGLANIPIMALVAALLPLVLGMILGNLDP--DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTI 230 (312)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhccch--hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHH
Confidence 344455543 233447778899999998643 3445555555678999999999999999998764444444444445
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHH--HHHhhHHHHHHHHHHHHhhCCCChHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 009951 420 VKTAVGTIVTKLFGYSMRTSFLVG--VSLAQIGEFAFVLLSRASNLHLVEGKMYLL-LLGTTALSLVTTPLLFKLIPN 494 (521)
Q Consensus 420 ~K~l~~~l~~~~~g~~~r~s~~lg--l~L~~~GefslVlas~a~~~giIs~e~~~l-ll~~~vlS~i~~Pll~~~~~~ 494 (521)
.-...+++..|++|.+.+.++.+| .+-+--|. +.+.+. .-..+..- +..+. +...+++|.+++|++..|.++
T Consensus 231 ~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgp-AAVaAa-dP~~~~~~-~~Ataqvaa~vivTail~P~~t~~~~k 305 (312)
T PRK12460 231 VTGFFNIFADRLVGGTGIAGAAASSTAGNAVATP-LAIAAA-DPSLAPVA-AAATAQVAASVIVTAILTPLLTSWVAK 305 (312)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHH-HHHHHh-chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777788898888877777 43333332 222221 11111111 22233 335677799999999998654
No 30
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.05 E-value=0.05 Score=61.53 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchh-hHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHH
Q 009951 336 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASV 414 (521)
Q Consensus 336 ~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~~~~-~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lv 414 (521)
..++...+...++..++++..+|-.++|++++..-... +-.+.++.+.++-..++.+.+|+.+|+..++......+.+.
T Consensus 12 ~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g 91 (601)
T PRK03659 12 LFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVG 91 (601)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33444555677888999999999999999998642110 11245667788888888999999999999987543322221
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChH
Q 009951 415 ILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEG 468 (521)
Q Consensus 415 ll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~ 468 (521)
..-++.-++......+.++.++..++.+|..++.-+. +++ ...-.+.+..+.
T Consensus 92 ~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SST-aiv-~~iL~e~~~~~t 143 (601)
T PRK03659 92 AAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSST-AMA-LQLMREKGMNRS 143 (601)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHH-HHHHHHcccccC
Confidence 1111122222233345568899889988876665443 333 233344454443
No 31
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.053 Score=58.28 Aligned_cols=141 Identities=20% Similarity=0.263 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC--CchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHH-H
Q 009951 334 QLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDI-L 410 (521)
Q Consensus 334 ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~--~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~-i 410 (521)
....+.++.....+.+.+|+++.+|-.++|+++.+. ..-.+-.+.++-+.++=..++...+|+.+|+..++..... .
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~ 90 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVG 90 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhh
Confidence 344556666677999999999999999999999983 1222334455556677777778999999999999987544 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 009951 411 LASVILVIIVKTAVGTIVTK-LFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLG 476 (521)
Q Consensus 411 l~lvll~vl~K~l~~~l~~~-~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~ 476 (521)
.......+..=++.+..... .++++++.++.+|..++.-+. + +.+..-.+.|..+.+.-.+++.
T Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~-~-i~~~iL~e~~~~~~~~g~~~l~ 155 (397)
T COG0475 91 LGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSST-A-IVLKILMELGLLKTREGQLILG 155 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-H-HHHHHHHHhccccchHHHHHHH
Confidence 22222222222222221112 579999999999988777652 2 2233334555555554444433
No 32
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.00044 Score=75.94 Aligned_cols=228 Identities=16% Similarity=0.210 Sum_probs=133.2
Q ss_pred Hhc--CchHHHHHHHHHhhcccHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc-----hh
Q 009951 218 LCG--AKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNS--GL-----LQ 288 (521)
Q Consensus 218 l~G--~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~~g~iiL~~avl~Dv~~~il~all~~l~~~~--~~-----~~ 288 (521)
++| .+...-++.|...|+.+|..|..+.+|..- |.-.==++.|.+.+||.+.+++.-+...+..-+ .. ..
T Consensus 156 lf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~ 234 (670)
T KOG1966|consen 156 LFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVL 234 (670)
T ss_pred hcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeec
Confidence 445 346788999999999999999999999854 333334567999999998887766554443211 10 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcC
Q 009951 289 GMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMIST 368 (521)
Q Consensus 289 ~~~sl~~~l~~l~~fllv~~vv~~~~~~~llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~ 368 (521)
+..++..+ + .+.+++..+++ ++.....|+.. ..+-+..++.+....+++..+|.+++|++++--++|+.++.
T Consensus 235 G~~sFfVV--s-lGG~lvGivfa-fl~sl~tkft~----~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~ 306 (670)
T KOG1966|consen 235 GVVSFFVV--S-LGGALVGIVFA-FLASLVTKFTK----HVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKK 306 (670)
T ss_pred ceeEEEEE--e-cCchhHHHHHH-HHHHHHHHhhc----ceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111000 0 00111111111 12222233332 33444456667777788889999999999999999999986
Q ss_pred C---CchhhHHHhhhc----HHHHHHHHHHHHhcchhhHHhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHh------C
Q 009951 369 T---DFAKHTLDQVEP----IRNLFAALFLSSIGMLIHVHFLWNHVD--ILLASVILVIIVKTAVGTIVTKLF------G 433 (521)
Q Consensus 369 ~---~~~~~l~~~le~----i~~~f~piFF~~iGl~ld~~~l~~~~~--~il~lvll~vl~K~l~~~l~~~~~------g 433 (521)
. ...++....++. ....-.++-|...|...--. +.+|. ++.+-++...+.|++++...+++. +
T Consensus 307 Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k 384 (670)
T KOG1966|consen 307 YVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVK 384 (670)
T ss_pred HHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheee
Confidence 4 222332333333 24566777888888865332 33343 333334555677888877766653 3
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHH
Q 009951 434 YSMRTSFLVGVSLAQIGEFAFVLL 457 (521)
Q Consensus 434 ~~~r~s~~lgl~L~~~GefslVla 457 (521)
.+..+.++++. =.-||.+++.+.
T Consensus 385 ~~~~DQfimsy-GGLRGAiaF~LV 407 (670)
T KOG1966|consen 385 LEFVDQFIMSY-GGLRGAIAFGLV 407 (670)
T ss_pred ccccceeeeec-CCcchhhheeEE
Confidence 45555555544 244665555443
No 33
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.97 E-value=0.057 Score=60.37 Aligned_cols=135 Identities=19% Similarity=0.300 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchh-hHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHH
Q 009951 338 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVIL 416 (521)
Q Consensus 338 lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~~~~-~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll 416 (521)
+..++.+..++..++.+..+|=.++|++++..-... +-.+.++.+.++-..++...+|+++|++.++..........+.
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~ 94 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHH
Confidence 444556677888899999999999999998652211 1124566777888888889999999999987654332222222
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHH
Q 009951 417 VIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLL 474 (521)
Q Consensus 417 ~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~ll 474 (521)
.++.=++.++...+.+++++..++.+|..++.-+. .++...-.+.|.++.+.-.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~G~~~ 150 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQRGQIA 150 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcchHHH
Confidence 22233344455566778999999999887776442 334444556676666444333
No 34
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.56 E-value=0.093 Score=58.82 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCch---hhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHH-
Q 009951 338 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFA---KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLAS- 413 (521)
Q Consensus 338 lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~~~---~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~l- 413 (521)
+.++.....+++.+|++..++-.++|+++...... .+-.+..+.+.++.+++.....|+++|+..+...+...+.+
T Consensus 15 l~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la 94 (562)
T PRK05326 15 LLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLA 94 (562)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHH
Confidence 34445566778889999999999999999875221 11123456678899999999999999999998876544333
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCC-ChHHHHHH
Q 009951 414 VILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHL-VEGKMYLL 473 (521)
Q Consensus 414 vll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~gi-Is~e~~~l 473 (521)
++.+.+.=.+.++...+.++.++.+++.+|..+++-.. + ++...-.+.++ +++++..+
T Consensus 95 ~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~-a-~v~~iL~~~~l~l~~~v~~~ 153 (562)
T PRK05326 95 TLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA-A-AVFSLLRGKGLNLKERVAST 153 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch-H-HHHHHHhccCCCcchhHHhH
Confidence 22233322333455556789999999999987777653 2 22234445553 44444333
No 35
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.17 E-value=0.24 Score=58.25 Aligned_cols=137 Identities=15% Similarity=0.255 Sum_probs=74.1
Q ss_pred HHHHHHHHhCchHHHHHHHHHHHhcCCCch-----------hhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHH
Q 009951 343 LSAWCSDKLGLSLELGSFMAGVMISTTDFA-----------KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILL 411 (521)
Q Consensus 343 ~~~~iae~lGls~~LGAFlAGl~ls~~~~~-----------~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il 411 (521)
++..+...++.+.++|-.++|+++...-.. .+-.+.++.+.++-..+|.+.+|+.+|+..++......+
T Consensus 57 l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~ 136 (832)
T PLN03159 57 LLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKAL 136 (832)
T ss_pred HHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHH
Confidence 345556677777888888888888753111 112235677778888888999999999999987532222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC----hH--HHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q 009951 412 ASVILVIIVKTAVGTIVTKLFGYS----MR--TSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALS 481 (521)
Q Consensus 412 ~lvll~vl~K~l~~~l~~~~~g~~----~r--~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS 481 (521)
.+.+..++.=++.++....++++. .. ..+.+|..++.-+ +. +++.+..+.++++.+.-.+.+.+++++
T Consensus 137 ~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts-~p-Vv~riL~Elkll~s~~GrlaLsaavv~ 210 (832)
T PLN03159 137 AIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTA-FP-VLARILAEIKLINTELGRIAMSAALVN 210 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhh-HH-HHHHHHHHcCcccCcHHHHHHHHHHHH
Confidence 111111111122222222222211 11 2344555444332 22 445555677777776666555444444
No 36
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.15 E-value=1.3 Score=47.34 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=73.6
Q ss_pred HHHHHHHHHHH-HHHHHhC-----chHHHHHHHHHHHhcCCC----chhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHh
Q 009951 335 LAAVAFCLLSA-WCSDKLG-----LSLELGSFMAGVMISTTD----FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLW 404 (521)
Q Consensus 335 l~~lal~~~~~-~iae~lG-----ls~~LGAFlAGl~ls~~~----~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~ 404 (521)
+..+++|+..+ ++.++++ +....+|++.|++++|.. ..+-..+.++.+.+.-+-+|.+..=|++.++.+.
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~ 303 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELA 303 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45566666544 4455554 567899999999999862 2222445677788999999998888999998888
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 009951 405 NHVDILL-ASVILVIIVKTAVGTIVTKLFGYSMRTSFL 441 (521)
Q Consensus 405 ~~~~~il-~lvll~vl~K~l~~~l~~~~~g~~~r~s~~ 441 (521)
+.+..++ ++.+-.++.-+...+...|.+|.+...+..
T Consensus 304 ~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 304 DLALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 7544333 333334555566677778888888666655
No 37
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=95.86 E-value=2 Score=46.00 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHH
Q 009951 359 SFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRT 438 (521)
Q Consensus 359 AFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~~~r~ 438 (521)
....|+..+-.+..+.+ .--+++..+++-+||+.+|+..|+..+.+.+. ++...++.+.+-.+..+...|++|.|..+
T Consensus 246 ~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~ap~-~~l~~~i~l~iH~~l~l~~~kl~k~~l~~ 323 (378)
T PF05684_consen 246 VTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLDAPS-LFLFGFIILAIHLLLMLILGKLFKIDLFE 323 (378)
T ss_pred HHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 34445555444444333 45667889999999999999999999888443 34445566677888888899999999765
Q ss_pred HHHHHHHHhhHHHHHH
Q 009951 439 SFLVGVSLAQIGEFAF 454 (521)
Q Consensus 439 s~~lgl~L~~~Gefsl 454 (521)
-.. +. .+++|..+-
T Consensus 324 ~~v-AS-~AnIGGpaT 337 (378)
T PF05684_consen 324 LLV-AS-NANIGGPAT 337 (378)
T ss_pred HHH-Hh-hcccCCcch
Confidence 444 43 677775443
No 38
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=95.63 E-value=0.3 Score=54.38 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHH-HH
Q 009951 338 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASV-IL 416 (521)
Q Consensus 338 lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lv-ll 416 (521)
+..+.....+++.++++..++-.++|+.++..+......-.-+.+..+++|......|+++|...++.++..+..+. ..
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~ 86 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLL 86 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 33444456778888888889999999988854221111000112346889999999999999999998875544433 33
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHH
Q 009951 417 VIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFA 453 (521)
Q Consensus 417 ~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~Gefs 453 (521)
+++.-.+.++...+..+.++..++.+|..+++.....
T Consensus 87 vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 87 VVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 3333334444444467899999999999998887533
No 39
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.63 E-value=0.46 Score=49.37 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=85.7
Q ss_pred hCchHHHHHHHHHHHhcC-C-CchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 351 LGLSLELGSFMAGVMIST-T-DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIV 428 (521)
Q Consensus 351 lGls~~LGAFlAGl~ls~-~-~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~ 428 (521)
.++++.+=|.+.|++++| . ...+....-++.-...++.+=-+..|.+++++.+.+.....+...++.+..-+..++..
T Consensus 24 ~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~l 103 (305)
T PF03601_consen 24 PGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWL 103 (305)
T ss_pred cCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 577888889999999998 4 23333333344444677888889999999999988754322333333333444445555
Q ss_pred H-HHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 009951 429 T-KLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL---GTTALSLVTTPLLFKLI 492 (521)
Q Consensus 429 ~-~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll---~~~vlS~i~~Pll~~~~ 492 (521)
. |.+|.+++.+..++.+.+-=|.-+++-.+-..+.+ ++|.-..+. ...++..++-|++.++.
T Consensus 104 g~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 104 GRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 5 99999999999999887777754444333333332 223222222 22233445556666553
No 40
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=95.26 E-value=0.14 Score=52.72 Aligned_cols=136 Identities=11% Similarity=0.088 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Q 009951 356 ELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFG-Y 434 (521)
Q Consensus 356 ~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g-~ 434 (521)
.+=-++.|+++.|.+. ++.+-+.+-....+|+|-..+|..+|++.+++....-+++-+..++.--...++.-|+.+ .
T Consensus 174 ~ilPlliG~ilGNLD~--~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~g~ 251 (314)
T TIGR00793 174 AVLPFLVGFALGNLDP--ELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIGGG 251 (314)
T ss_pred HHHHHHHHHHHhcCCH--HHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhcCC
Confidence 3445789999988753 455667777789999999999999999999875322222212222333455566667663 3
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 009951 435 SMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLL-LLGTTALSLVTTPLLFKLIPN 494 (521)
Q Consensus 435 ~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~l-ll~~~vlS~i~~Pll~~~~~~ 494 (521)
+..-.+..|-.-...-....+++..--+....- +..+. +..++++|.+++|++..|..+
T Consensus 252 ~g~aG~A~sstAGnAvatPaavA~adPs~~~~a-~~ATaqvAaavivTaiL~Pilta~~~k 311 (314)
T TIGR00793 252 DGTAGIAASSSAGAAVATPVLIAEMVPAFKPVA-PAATALVATSVIVTSLLVPIATVWWSK 311 (314)
T ss_pred CCchhhHHHHHHHHhhhhHHHHHHhChhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332211111111223332211222111 22233 335667799999999988654
No 41
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=95.11 E-value=0.091 Score=54.28 Aligned_cols=132 Identities=11% Similarity=0.114 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Q 009951 357 LGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLF-GYS 435 (521)
Q Consensus 357 LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~-g~~ 435 (521)
+=-++.|+++.|.+. ++.+-+.+-....+|+|-..+|..+|+..+.+....-+++-+..++.--...++.-|+. |.+
T Consensus 175 llP~iiG~iLGNLD~--~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~~~~ 252 (314)
T PF03812_consen 175 LLPIIIGMILGNLDP--DFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLILKGN 252 (314)
T ss_pred HHHHHHHHHHhcCCH--HHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHcCCC
Confidence 445789999988743 46667777778999999999999999999988633222222222222233445555553 433
Q ss_pred hHHHHHHHHHHhhHHHHH----HHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009951 436 MRTSFLVGVSLAQIGEFA----FVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPN 494 (521)
Q Consensus 436 ~r~s~~lgl~L~~~Gefs----lVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~~~ 494 (521)
..- |+..+.....+ .+++..--+....-+.--.-+...+++|.+++|++..|+.+
T Consensus 253 g~a----G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~k 311 (314)
T PF03812_consen 253 GVA----GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWAK 311 (314)
T ss_pred Cce----eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 33333333222 22333222222222222222336677899999999998653
No 42
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.98 E-value=0.7 Score=48.36 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=87.6
Q ss_pred HHHHHhCchHHHHHHHHHHHhcCCC-chhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHH
Q 009951 346 WCSDKLGLSLELGSFMAGVMISTTD-FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAV 424 (521)
Q Consensus 346 ~iae~lGls~~LGAFlAGl~ls~~~-~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~ 424 (521)
...+..|+++..=|.+.|++++... ..++...-++--+..++.+=-+..|++++++++.+-..-.+....+.+..-++.
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~ 109 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLF 109 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 3445566778888899999998543 223333334433456677777889999999999875444455556666777888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHH
Q 009951 425 GTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSL 482 (521)
Q Consensus 425 ~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~ 482 (521)
+++..+++|.|++.+..+|.+-+-=|.-+ +.+ .+--.+--++|+...+..++++++
T Consensus 110 ~~~lg~~lgld~~~a~Lia~GssICGasA-iaA-~~pvika~~~eva~aIa~V~lfgt 165 (334)
T COG2855 110 AYFLGKLLGLDKKLALLIAAGSSICGASA-IAA-TAPVIKAEEEEVAVAIAVVVLFGT 165 (334)
T ss_pred HHHHHHHhCCCHHHHHHHHccchhhHHHH-HHH-hCCcCCCCccccceehhhHHHHHH
Confidence 88888999999999999988766666433 222 222223334455544444444443
No 43
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.73 E-value=1.6 Score=45.92 Aligned_cols=105 Identities=11% Similarity=0.109 Sum_probs=67.8
Q ss_pred hCchHHHHHHHHHHHhcCCC---chhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 351 LGLSLELGSFMAGVMISTTD---FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTI 427 (521)
Q Consensus 351 lGls~~LGAFlAGl~ls~~~---~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l 427 (521)
.++++.+=|.+.|++++|.- ..+....-++--...++-+=-+..|+++++..+.+.....+...+..+..-+..++.
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999852 112222222222345666667889999999998775433333333344444454444
Q ss_pred H-HHHhCCChHHHHHHHHHHhhHHHHHHH
Q 009951 428 V-TKLFGYSMRTSFLVGVSLAQIGEFAFV 455 (521)
Q Consensus 428 ~-~~~~g~~~r~s~~lgl~L~~~GefslV 455 (521)
. .|.+|.+++.+..++.+-+-=|.-+++
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~ 137 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVA 137 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHH
Confidence 4 478999999999998887766653333
No 44
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=94.37 E-value=9 Score=41.36 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=63.7
Q ss_pred CchHHHHHHHHHHHhcCCC----chhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHH-HHHH
Q 009951 352 GLSLELGSFMAGVMISTTD----FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKT-AVGT 426 (521)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~----~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~-l~~~ 426 (521)
.+....+|++.|+++++.- ..+...+.++.+.+..+-+|-+..=|.++++.+.+.+..++++++.-++.-. ...+
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~f 323 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAIF 323 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999851 2222234566778888888888888999999999887666555444433333 4456
Q ss_pred HHHHHhCCChHHHHHH
Q 009951 427 IVTKLFGYSMRTSFLV 442 (521)
Q Consensus 427 l~~~~~g~~~r~s~~l 442 (521)
+..|.+|.+ .|+..+
T Consensus 324 v~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 324 VTFRLMGKD-YDAAVL 338 (398)
T ss_pred HhHHhccch-HHHHHH
Confidence 667778877 777663
No 45
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.34 E-value=0.98 Score=52.46 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=67.4
Q ss_pred HHHHHhCchHHHHHHHHHHHhcCCCch----hh----HHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHH
Q 009951 346 WCSDKLGLSLELGSFMAGVMISTTDFA----KH----TLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILV 417 (521)
Q Consensus 346 ~iae~lGls~~LGAFlAGl~ls~~~~~----~~----l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~ 417 (521)
++.+.+.++..+-+.++|+++...... .+ -...++ +.++.+++-.+..|++++...++.+|..+..+++..
T Consensus 31 ~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~ 109 (810)
T TIGR00844 31 FVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPV 109 (810)
T ss_pred HHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHH
Confidence 344444555555555566655543110 00 111233 678889999999999999999999987665554444
Q ss_pred HHHHHHHHHHHHH-H-hCCChHHHHHHHHHHhhHHH
Q 009951 418 IIVKTAVGTIVTK-L-FGYSMRTSFLVGVSLAQIGE 451 (521)
Q Consensus 418 vl~K~l~~~l~~~-~-~g~~~r~s~~lgl~L~~~Ge 451 (521)
+..-.+.+.+..+ + .+.++..++.+|..++|-.-
T Consensus 110 M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDP 145 (810)
T TIGR00844 110 MTSGWLVIALFVWILVPGLNFPASLLMGACITATDP 145 (810)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcH
Confidence 4444444444444 4 48999999999999998764
No 46
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=93.94 E-value=0.3 Score=51.22 Aligned_cols=136 Identities=10% Similarity=0.029 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 009951 355 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 434 (521)
Q Consensus 355 ~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~ 434 (521)
..+.+++.|..+.+.+ +.+.+...+=.++++|++-...|..+|.+.+.......+++-+..++......+...|+++.
T Consensus 175 ~allplliG~~lgnl~--~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~ 252 (326)
T PRK05274 175 GAVLPLLVGFILGNLD--PELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGG 252 (326)
T ss_pred HHHHHHHHHHHHHhHH--HhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeec
Confidence 3447888899988742 22333333334679999999999999999887652222222223333445545555577754
Q ss_pred ChH---HHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009951 435 SMR---TSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPN 494 (521)
Q Consensus 435 ~~r---~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~~~ 494 (521)
++. .+...+.+-+--| .+. ++...-...-..++....+..++++|.++.|++..+..+
T Consensus 253 ~~g~~g~a~~ttaG~aic~-pAA-vaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k 313 (326)
T PRK05274 253 GNGVAGAAAGSTAGNAVAT-PAA-VAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSK 313 (326)
T ss_pred CCCcchHHHHHHHHHHHHH-HHH-HHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3333322222222 122 222222233333444444446667899999999887543
No 47
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.79 E-value=0.65 Score=47.97 Aligned_cols=131 Identities=21% Similarity=0.337 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchhhHHHhhhc-HHHHHHHHHHHHhcchhhHHhHhHHHHHHHHH
Q 009951 335 LAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEP-IRNLFAALFLSSIGMLIHVHFLWNHVDILLAS 413 (521)
Q Consensus 335 l~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~~~~~l~~~le~-i~~~f~piFF~~iGl~ld~~~l~~~~~~il~l 413 (521)
..-+.++|....+++.+.+||.+|-.+||++.....+.-.-.+.+.+ +.++=..+...-+|+|+...++...-.+.+--
T Consensus 12 v~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipg 91 (408)
T COG4651 12 VGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPG 91 (408)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcch
Confidence 34566677888999999999999999999999854332222234443 34555556677899999999886532222111
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhC-CCChH
Q 009951 414 VILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNL-HLVEG 468 (521)
Q Consensus 414 vll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~-giIs~ 468 (521)
.+.-+..-....+-..+..|++....+..|+.++..+. |+.-++.+. +.+|.
T Consensus 92 Al~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aST---VvllraLqEr~lidt 144 (408)
T COG4651 92 ALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVAST---VVLLRALEERQLIDT 144 (408)
T ss_pred HHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHH---HHHHHHHHHhccccc
Confidence 11112222333444556778888888888888777655 666677653 45554
No 48
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=92.71 E-value=2.3 Score=44.08 Aligned_cols=135 Identities=20% Similarity=0.179 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHhcCC--CchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 353 LSLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK 430 (521)
Q Consensus 353 ls~~LGAFlAGl~ls~~--~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~ 430 (521)
-+|.+=|.++|+++.-. +..+-+.+.++.+.+...|+=...+|+.++.......+......++...+.-++.++...+
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~ 260 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISK 260 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677888888754 3356677888889999999999999999988776554444444555566666667777777
Q ss_pred HhCCChHHH--HHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 431 LFGYSMRTS--FLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKL 491 (521)
Q Consensus 431 ~~g~~~r~s--~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~ 491 (521)
.++.+.... ..+-. -.|.+....++ |.++|.-.+.....+..++++|.++-|++..+
T Consensus 261 ~~~l~~~~~~~~vl~a-a~P~a~~~~i~---A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 261 LIGLRGLELSVAILQA-ALPGGAVAAVL---ATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HhCCChHHHHHHHHHH-cCChhhHHHHH---HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777654332 22222 33544444444 44566544555566678888899888887654
No 49
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=92.52 E-value=1.7 Score=42.09 Aligned_cols=128 Identities=15% Similarity=0.183 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhH-----HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 357 LGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHV-----HFLWNHVDILLASVILVIIVKTAVGTIVTKL 431 (521)
Q Consensus 357 LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~-----~~l~~~~~~il~lvll~vl~K~l~~~l~~~~ 431 (521)
++++++|+++......+ .+..+...+..+-+.-..+|+++-- ..+++...-.+.+-+..+++-.+++++..++
T Consensus 2 l~~li~Gi~lG~~~~~~--~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP--FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhccc--ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888777653322 2222556555555555556666532 2333222234455566778889999999999
Q ss_pred hCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHH----HHHHHHHHHHHHhh
Q 009951 432 FGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT----ALSLVTTPLLFKLI 492 (521)
Q Consensus 432 ~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~----vlS~i~~Pll~~~~ 492 (521)
.+.+.++++.++.++.=-+--+..++.. .+++.-++...+= +++.+..|++.|+.
T Consensus 80 l~~~~~~~lav~sG~GwYSlsg~~i~~~------~~~~~G~iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYSLSGVLITQL------YGPELGTIAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred hcCCHHHHHHHHccCcHHHhHHHHHHhh------hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999887766555444444432 2333333332222 34566778888843
No 50
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=90.44 E-value=0.034 Score=58.52 Aligned_cols=109 Identities=16% Similarity=0.295 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHHhcCCCch--hhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHH
Q 009951 342 LLSAWCSDKLGLSLELGSFMAGVMISTTDFA--KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVII 419 (521)
Q Consensus 342 ~~~~~iae~lGls~~LGAFlAGl~ls~~~~~--~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl 419 (521)
+....+.++++++..+|-.++|++++..... +...+..+.+.++..++.....|.++|+..+..++...+...+..++
T Consensus 9 ~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~ 88 (380)
T PF00999_consen 9 FVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFL 88 (380)
T ss_dssp ---------------------------------------S-SSHHHHS--SSHHHHTTGGGG------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceee
Confidence 3344468889999999999999999987433 11145677778999999999999999999998876544433333333
Q ss_pred HHHHH-HHHHHH---HhCCChHHHHHHHHHHhhHH
Q 009951 420 VKTAV-GTIVTK---LFGYSMRTSFLVGVSLAQIG 450 (521)
Q Consensus 420 ~K~l~-~~l~~~---~~g~~~r~s~~lgl~L~~~G 450 (521)
.-++. ++.... ..+.++.++...|..+++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 89 LPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp -------------------------TTHHHHTT--
T ss_pred ehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 33333 344432 46889999999999887766
No 51
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=89.96 E-value=4 Score=43.13 Aligned_cols=116 Identities=14% Similarity=0.204 Sum_probs=76.9
Q ss_pred CchHHHHHHHHHHHhcCCC-chhhHHHhhhcHHHH----HHHHHHHHhcch-hhHHhHhHHH-HHHHHHHHHHHHHHHHH
Q 009951 352 GLSLELGSFMAGVMISTTD-FAKHTLDQVEPIRNL----FAALFLSSIGML-IHVHFLWNHV-DILLASVILVIIVKTAV 424 (521)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~-~~~~l~~~le~i~~~----f~piFF~~iGl~-ld~~~l~~~~-~~il~lvll~vl~K~l~ 424 (521)
++|+..-+.+.|+++.... ..++++++......| +.+..++-+|+. +|++.+.+.. ...+.+++..+++=.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 6788888888888888764 345566665555433 334444556776 7888887765 33455566677778888
Q ss_pred HHHHHHHhCCChHHHH-HHHHHHhhHHHH-HHHHHHHHhhCCCCh
Q 009951 425 GTIVTKLFGYSMRTSF-LVGVSLAQIGEF-AFVLLSRASNLHLVE 467 (521)
Q Consensus 425 ~~l~~~~~g~~~r~s~-~lgl~L~~~Gef-slVlas~a~~~giIs 467 (521)
++++.|+.|+-+-|+. ..|+.++.+|.- .+.+.+-+.+.+++.
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 9999999997666655 557788888842 244445555555544
No 52
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=89.93 E-value=17 Score=33.92 Aligned_cols=145 Identities=20% Similarity=0.226 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhCch--HHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHH---HHHHHHH
Q 009951 339 AFCLLSAWCSDKLGLS--LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH---VDILLAS 413 (521)
Q Consensus 339 al~~~~~~iae~lGls--~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~---~~~il~l 413 (521)
.++...+++.+++++. ..+|+++++..++-....+ .+.=+.++.+-..+.=..+|.++++..+.+. +...+..
T Consensus 5 ~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~--~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~ 82 (156)
T TIGR03082 5 LVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLE--ITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLS 82 (156)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCcc--CCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 3445566677788875 7888888888887442111 1111223455555556889999998877653 2233444
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH-HHHHHHHHHHh
Q 009951 414 VILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTAL-SLVTTPLLFKL 491 (521)
Q Consensus 414 vll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vl-S~i~~Pll~~~ 491 (521)
++..+..-.+.+++..+.++.|+.+++. +.+|-|--+..+.. .+.| .|...-......=++ -.+..|++.++
T Consensus 83 ~~~~l~~~~~~~~~l~~~~~~~~~ta~L---a~~PGGl~~m~~~A--~~~g-ad~~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 83 TVLLLALSALLAWLLARLTGVDPLTAFL---ATSPGGASEMAALA--AELG-ADVAFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCchHHHHHHHH--HHhC-CCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555666677788888999999888864 36677765555544 3444 233333333222222 22345665553
No 53
>COG0679 Predicted permeases [General function prediction only]
Probab=89.62 E-value=11 Score=39.21 Aligned_cols=137 Identities=23% Similarity=0.233 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHHhcCC--CchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 009951 353 LSLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVT 429 (521)
Q Consensus 353 ls~~LGAFlAGl~ls~~--~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~-~~~il~lvll~vl~K~l~~~l~~ 429 (521)
.+|.+=|++.|+.++.. +..+.+.+.++.+.+...|+=.+.+|+.++....... ...+........+..++..+...
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888854 4455677888889999999999999999999544433 22233333335777788888888
Q ss_pred HHhCCChHHH-HHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 430 KLFGYSMRTS-FLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 430 ~~~g~~~r~s-~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
+..+.+..+. ..+=....|.+....+++. +.+.-.+...+.+..++.++.+..|.++-+.
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~---~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYVLAR---QYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHHHHH---HhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888775443 2222224566555555554 4666556666777788888998888877664
No 54
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=89.10 E-value=32 Score=35.99 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHhcCCCchh-hHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHH-
Q 009951 334 QLAAVAFCLLSAWCSDKLGL--SLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDI- 409 (521)
Q Consensus 334 ll~~lal~~~~~~iae~lGl--s~~LGAFlAGl~ls~~~~~~-~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~- 409 (521)
....+..+....++.+++++ ...+|+++.+..++.....+ ..- +.+......+.=..+|.+++...+.+....
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P---~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~ 233 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLP---PWLVNAAQVLIGASIGSRFTRETLRELRRLL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 34455566778888999988 46899999988887552111 111 123455555556889999998887664322
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH-HHHHHH
Q 009951 410 --LLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTAL-SLVTTP 486 (521)
Q Consensus 410 --il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vl-S~i~~P 486 (521)
.+...+..+..-.+.+++..++++.+..+.+. +.+|-|.-+..+..... | .|...-...-.+=++ -.++.|
T Consensus 234 ~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l--~-~d~~~V~~~q~~Rl~~v~~~~p 307 (318)
T PF05145_consen 234 PPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALAL--G-ADVAFVAAHQVVRLLFVLLLAP 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHc--C-CChHHHHHHHHHHHHHHHHHHH
Confidence 23444455566677788888999999877765 47788877776655444 3 244433333333223 234568
Q ss_pred HHHHhhh
Q 009951 487 LLFKLIP 493 (521)
Q Consensus 487 ll~~~~~ 493 (521)
++.|+..
T Consensus 308 ~~~r~~~ 314 (318)
T PF05145_consen 308 FIARWLR 314 (318)
T ss_pred HHHHHHH
Confidence 8877754
No 55
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=88.33 E-value=21 Score=38.89 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhhHHH
Q 009951 384 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLF--GYSMRTSFLVGVSLAQIGE 451 (521)
Q Consensus 384 ~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~--g~~~r~s~~lgl~L~~~Ge 451 (521)
.+++|+--..-|+++|...+++++..+..+....++...+++....++. +.++..++..|..++|-.-
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDP 133 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDP 133 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCc
Confidence 8888888889999999999999887766655555555555555555554 6777788888888887664
No 56
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=88.10 E-value=30 Score=34.53 Aligned_cols=109 Identities=23% Similarity=0.295 Sum_probs=79.6
Q ss_pred hhHHHhhhcHH-HHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHH
Q 009951 373 KHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGE 451 (521)
Q Consensus 373 ~~l~~~le~i~-~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~Ge 451 (521)
+-+..-++|-. -+..|+| =+.+.+.++|..++..+++..+.-++.+++..+++|.+.. +-.++.||+.
T Consensus 62 ~~i~~lLgPAtVAlAvPLY-------kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~PkSv 130 (230)
T COG1346 62 QWINFLLGPATVALAVPLY-------KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPKSV 130 (230)
T ss_pred HHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhccccc
Confidence 34445555543 4666665 3566678888877777777777788889999999998853 3345899997
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 452 FAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 452 fslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
-.-+-...+.+.|-+++-....++.+-++..+++|.+.|+.
T Consensus 131 TTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 131 TTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777888888877666666677788888899888875
No 57
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=87.53 E-value=46 Score=36.01 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcchhhHHhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHH-hhHHHHHHHH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFLWNHVDIL---LASVILVIIVKTAVGTIVTKLFGYSMRTSFLVG-VSL-AQIGEFAFVL 456 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l~~~~~~i---l~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lg-l~L-~~~GefslVl 456 (521)
+.++|..+||+++|+.-+...+++....+ ..+.....+.+.+......+.+|.++.-....| .+| .-+| .+...
T Consensus 65 l~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHG-TAaA~ 143 (398)
T TIGR00210 65 LRDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHG-TGAAW 143 (398)
T ss_pred HHHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCc-HHHHH
Confidence 55899999999999999998887653322 233344667888888888899999988777642 222 2333 34555
Q ss_pred HHHHhh-CCCChHHHHHHHHH--HHHHHHHHHHHHHHhh
Q 009951 457 LSRASN-LHLVEGKMYLLLLG--TTALSLVTTPLLFKLI 492 (521)
Q Consensus 457 as~a~~-~giIs~e~~~lll~--~~vlS~i~~Pll~~~~ 492 (521)
+..-.+ .|.-+.....+..+ -.+...+++-.+.++.
T Consensus 144 g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~l 182 (398)
T TIGR00210 144 SPVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFL 182 (398)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555433 57655544333322 2233556665555554
No 58
>PRK09903 putative transporter YfdV; Provisional
Probab=86.39 E-value=21 Score=36.96 Aligned_cols=134 Identities=10% Similarity=0.008 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhcCC--CchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 354 SLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 431 (521)
Q Consensus 354 s~~LGAFlAGl~ls~~--~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~ 431 (521)
+|.+=+.++|+.+.-. +..+.+.+.++.+.+...|+=...+|+++.......... .....+...+.-++..+.....
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~~~~~~~ 251 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLALLLVGMA 251 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777766543 455677788889999999999999999986654322222 1222334444445556665666
Q ss_pred hCCChHHHH-HHHHHHhhHHHHHHHHHHHHhhCCCChHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 009951 432 FGYSMRTSF-LVGVSLAQIGEFAFVLLSRASNLHLVEGKMY-LLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 432 ~g~~~r~s~-~lgl~L~~~GefslVlas~a~~~giIs~e~~-~lll~~~vlS~i~~Pll~~~~ 492 (521)
.+.+..... .+=.+-.|.+....+++ .++|. |++.. ..+..++++|.++-|++..+.
T Consensus 252 ~~l~~~~~~v~vl~aa~P~a~~~~i~A---~~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 252 CHLNSEHLQMMVLAGALPPAFSGIIIA---SRFNV-YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred cCCCcHHHHHHHHHHcccHHHHHHHHH---HHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666533221 22222445555555555 45564 44444 444467777888888877653
No 59
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=83.65 E-value=4.7 Score=43.17 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHhcchhhHHhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH-HHh-hHHHHHHH
Q 009951 381 PIRNLFAALFLSSIGMLIHVHFLWNHVDIL---LASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGV-SLA-QIGEFAFV 455 (521)
Q Consensus 381 ~i~~~f~piFF~~iGl~ld~~~l~~~~~~i---l~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl-~L~-~~GefslV 455 (521)
++++.|..+||+++|+.-++..+...+-.+ +.........+-.......+..+.++.-+++.|. +|. .. .-+..
T Consensus 66 ~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGH-GtaAA 144 (404)
T COG0786 66 SLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGH-GTAAA 144 (404)
T ss_pred ccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCC-chHHH
Confidence 578999999999999999999988764322 2223334456666667777888888776666633 221 12 24555
Q ss_pred HHHHHhhCCCChHHHHHHHH--HHHHHHHHHHHHHHHhh
Q 009951 456 LLSRASNLHLVEGKMYLLLL--GTTALSLVTTPLLFKLI 492 (521)
Q Consensus 456 las~a~~~giIs~e~~~lll--~~~vlS~i~~Pll~~~~ 492 (521)
.+....+.|.-+.....+.. ...+.-.+++-.+.|+.
T Consensus 145 ~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~l 183 (404)
T COG0786 145 WGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWL 183 (404)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHH
Confidence 66666666765543332221 12223345554445553
No 60
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=83.22 E-value=45 Score=35.60 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=59.4
Q ss_pred CchHHHHHHHHHHHhcCCC----chhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHH-HHHHHHHHHHHHH
Q 009951 352 GLSLELGSFMAGVMISTTD----FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLAS-VILVIIVKTAVGT 426 (521)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~----~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~l-vll~vl~K~l~~~ 426 (521)
.+...++|+++|+++++.- ..+--.+.++.+.++.+-+|-+..=+.++++.+.+....++++ ++-.++.=....+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999851 1121123456677888878877777889999998876554433 3333334445556
Q ss_pred HHHHHhCCChHHHHHHHH
Q 009951 427 IVTKLFGYSMRTSFLVGV 444 (521)
Q Consensus 427 l~~~~~g~~~r~s~~lgl 444 (521)
+..|.+|.+. |+..++.
T Consensus 326 v~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 326 VTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HhhhhhCCCh-hHHHHhh
Confidence 6678888885 5544433
No 61
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=82.11 E-value=75 Score=33.84 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCch--HHHH-HHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhH---HHHHHHH
Q 009951 339 AFCLLSAWCSDKLGLS--LELG-SFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLA 412 (521)
Q Consensus 339 al~~~~~~iae~lGls--~~LG-AFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~---~~~~il~ 412 (521)
.+.+..+++.+++|+. ..+| ..++|++..-....-..- +.++.+--.+-=..+|.++.++.+.+ +|...+.
T Consensus 16 ~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P---~~l~~~~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~ 92 (352)
T COG3180 16 LLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLP---RGLFKAGQVILGIMIGASLTPSVLDTLKSNWPIVLV 92 (352)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCC---hHHHHHHHHHHHHHHhhhcCHHHHHHHHHcccHHHH
Confidence 3444567777887774 4677 666666655332211111 11223333444567888888776654 4555566
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH-HHHHHHHHHHh
Q 009951 413 SVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTAL-SLVTTPLLFKL 491 (521)
Q Consensus 413 lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vl-S~i~~Pll~~~ 491 (521)
.++..+.+-.+..++..|+.+.|..+++. +.+|-|.-+++. .|.++|- |...-......=++ -....|++.++
T Consensus 93 v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~---gs~PGgas~m~~--iA~d~gA-d~~~VAl~Q~lRvl~Vvl~vplv~~~ 166 (352)
T COG3180 93 VLLLTLLSSILLGWLLKRFSILPGNTAFL---GSSPGGASAMVS--IAQDYGA-DLRLVALMQYLRVLFVVLLAPLVSRL 166 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhhH---hcCCchHHHHHH--HHHHhCC-ChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777788888888888787766654 345666544444 4455554 23333333322222 34466888888
Q ss_pred hh
Q 009951 492 IP 493 (521)
Q Consensus 492 ~~ 493 (521)
.+
T Consensus 167 ~~ 168 (352)
T COG3180 167 FV 168 (352)
T ss_pred hc
Confidence 65
No 62
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=76.62 E-value=1.1e+02 Score=32.60 Aligned_cols=151 Identities=18% Similarity=0.231 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHhcCCCchhhHHHhhhc-HHHHHHHHHHHHhcchhhHHhHhHHHH--
Q 009951 334 QLAAVAFCLLSAWCSDKLGL--SLELGSFMAGVMISTTDFAKHTLDQVEP-IRNLFAALFLSSIGMLIHVHFLWNHVD-- 408 (521)
Q Consensus 334 ll~~lal~~~~~~iae~lGl--s~~LGAFlAGl~ls~~~~~~~l~~~le~-i~~~f~piFF~~iGl~ld~~~l~~~~~-- 408 (521)
+...+...++...+...+++ ...+|+++.|..++.... +.-++.. ...+-..+.=..+|.++|-+.+.....
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~---~~~~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~~ 266 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGG---ITIQLPAWLLAVAQALIGALIGSRFDRSILREAKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccc---eeeeCCHHHHHHHHHHHHHHHcccccHHHHHHhHhhc
Confidence 34444555556666777766 457899999988876531 1111111 123444455688999999887765322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH-HHHHHH
Q 009951 409 -ILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTAL-SLVTTP 486 (521)
Q Consensus 409 -~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vl-S~i~~P 486 (521)
..++.++..++.-...+++..+..+.++.++.. +.+|-|.-++.....+.+ .|...-..+...=++ -..+.|
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~---ad~a~V~a~q~lRll~il~i~p 340 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALG---ADPAFVMALQVLRLLFILLLGP 340 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHHHH
Confidence 223334444555566677778888998877654 366877666665554443 233332222221111 122347
Q ss_pred HHHHhhh
Q 009951 487 LLFKLIP 493 (521)
Q Consensus 487 ll~~~~~ 493 (521)
.+.|+..
T Consensus 341 ~l~r~l~ 347 (352)
T COG3180 341 ALARFLS 347 (352)
T ss_pred HHHHHHH
Confidence 7777754
No 63
>PRK10711 hypothetical protein; Provisional
Probab=76.59 E-value=50 Score=33.12 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=68.0
Q ss_pred hhhcHH-HHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHH
Q 009951 378 QVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVL 456 (521)
Q Consensus 378 ~le~i~-~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVl 456 (521)
-+.|-. -+-.|+| =+.+.+.++|..++..+.+..+.-++.++..++.+|.+.. +-.+|.||+.-.-+-
T Consensus 65 lLgPAtVALAvPLY-------~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIA 133 (231)
T PRK10711 65 LLQPAVVALAFPLY-------EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIA 133 (231)
T ss_pred hhhHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHH
Confidence 344433 4555554 3555667777666666666666777888888999998743 344689999766666
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 457 LSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 457 as~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
...+.+.|-+..-.....+.+-++-.+++|.++|+.
T Consensus 134 m~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 134 MAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667777776544444444455566777788777764
No 64
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=76.34 E-value=28 Score=37.14 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcchhhHHhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHHhhHHHHHHHHH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFLWNHVDI---LLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVG-VSLAQIGEFAFVLL 457 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l~~~~~~---il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lg-l~L~~~GefslVla 457 (521)
+.++|..+||+++|+..+...+...+.. ...+.......+.+......+.++.++.-....| .++..==..+...+
T Consensus 65 l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g 144 (368)
T PF03616_consen 65 LQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFG 144 (368)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHH
Confidence 6688999999999999998887665322 2233333456788877777888888877666554 22222112455555
Q ss_pred HHHhhC-CCChHHHH
Q 009951 458 SRASNL-HLVEGKMY 471 (521)
Q Consensus 458 s~a~~~-giIs~e~~ 471 (521)
..--+. |.-+....
T Consensus 145 ~~fe~~~G~~~a~~v 159 (368)
T PF03616_consen 145 PTFEELYGWEGATSV 159 (368)
T ss_pred HHHHHhcChhhhHHH
Confidence 554454 66444433
No 65
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=75.48 E-value=44 Score=35.14 Aligned_cols=132 Identities=19% Similarity=0.169 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHhcCCC--ch----hhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHH--HHHHHHHHHHHHHHHHHHH
Q 009951 354 SLELGSFMAGVMISTTD--FA----KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH--VDILLASVILVIIVKTAVG 425 (521)
Q Consensus 354 s~~LGAFlAGl~ls~~~--~~----~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~--~~~il~lvll~vl~K~l~~ 425 (521)
++.+=+.+.|++++-.+ .. +-+.+.++.+.+...|+=.+.+|..+........ +......++...+.-++.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 67777777788777653 22 4566778888999999999999999876543321 2222334556666667777
Q ss_pred HHHHHHhCCChHHH-HHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 009951 426 TIVTKLFGYSMRTS-FLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLL 488 (521)
Q Consensus 426 ~l~~~~~g~~~r~s-~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll 488 (521)
+...+.++.+.... +.+=..-.|-+....++ +..++.-.++.-..+.++++++.+..|++
T Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~---a~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 384 (385)
T PF03547_consen 324 IGIVFLLGLDGDMARVLILQAAMPTAINSFVI---ASLYGLDEEEASSIVFWSTLLSIPTLPLW 384 (385)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCCchHHHHHH---HHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777554322 11111234444444444 44556656666677777778888777764
No 66
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=74.88 E-value=72 Score=36.06 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHH----HHHHHHHHHHHHHHHHHHHHHH
Q 009951 353 LSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH----VDILLASVILVIIVKTAVGTIV 428 (521)
Q Consensus 353 ls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~----~~~il~lvll~vl~K~l~~~l~ 428 (521)
+...-|++++|++++..... .-+.+++++..+|-.++|++.-|.++..- +... ++.++.++.-.+.++..
T Consensus 35 LG~~~gvLfvgl~~G~~g~~-----i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~-~~a~~~~~~~~~~~~~~ 108 (562)
T TIGR03802 35 LGGVAGSLIVAVLIGQLGIQ-----IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREI-ILALVFAVSGLITVYAL 108 (562)
T ss_pred cchHHHHHHHHHHHHhcCCC-----CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHH
Confidence 34456889999999876331 11236789999999999999999987542 2222 22233334446677778
Q ss_pred HHHhCCChHHH
Q 009951 429 TKLFGYSMRTS 439 (521)
Q Consensus 429 ~~~~g~~~r~s 439 (521)
.++++.+.-..
T Consensus 109 ~~~~g~~~~~~ 119 (562)
T TIGR03802 109 AKIFGLDKGTA 119 (562)
T ss_pred HHHhCCCHHHH
Confidence 88899886543
No 67
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=69.92 E-value=84 Score=31.12 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=58.7
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 009951 399 HVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT 478 (521)
Q Consensus 399 d~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~ 478 (521)
+.+.+..++..++..+.+..+.-+..++..++.+|.+.. +..++.||+.-.-+-.....+.|-...-.....+.+-
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitG 144 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE----IILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITG 144 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 455667777666666666666777888888899888743 3446889997655555666667765444444444555
Q ss_pred HHHHHHHHHHHHh
Q 009951 479 ALSLVTTPLLFKL 491 (521)
Q Consensus 479 vlS~i~~Pll~~~ 491 (521)
++..+++|.+.|+
T Consensus 145 i~Ga~~g~~llk~ 157 (215)
T PF04172_consen 145 ILGAVLGPPLLKL 157 (215)
T ss_pred hHHHHhHHHHHhH
Confidence 5666677777766
No 68
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=69.60 E-value=1.3e+02 Score=30.26 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=71.8
Q ss_pred hhhcHH-HHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHH
Q 009951 378 QVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVL 456 (521)
Q Consensus 378 ~le~i~-~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVl 456 (521)
-+.|-. -+-.|+| =+.+.+.++|..++..+++..+.-++.++..++.+|.+.. +-.+|.||+.-.-+-
T Consensus 70 lLgPAtVALAvPLY-------~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtPIA 138 (232)
T PRK04288 70 FLEPATIAFAIPLY-------KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTAIA 138 (232)
T ss_pred HHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHHHH
Confidence 344443 4556665 3556677777777666666677778888888999998852 445689999766666
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 457 LSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 457 as~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
..++.+.|-+..-.....+.+-++-.+++|.++|+.
T Consensus 139 m~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 139 LPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 677777777655555555566677778888887774
No 69
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=64.74 E-value=2e+02 Score=30.61 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHH
Q 009951 384 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSR 459 (521)
Q Consensus 384 ~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVlas~ 459 (521)
+++-|+-|.-+|.-.|+..+..++..++... ..-++ ...++......|++.+|+..+|..=..=|-.++.+++.
T Consensus 69 ~l~P~LIF~GIGAmtDFgpllanP~~~llGa-aAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~ 142 (360)
T PF03977_consen 69 GLFPPLIFMGIGAMTDFGPLLANPKTLLLGA-AAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSK 142 (360)
T ss_pred chhhHHHHHHHhHHHhhHHHHhCHHHHHHHH-HHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHh
Confidence 7999999999999999999988876533221 12222 34455666677999999988887655556666666654
No 70
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=63.13 E-value=1.7e+02 Score=33.07 Aligned_cols=73 Identities=8% Similarity=0.174 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------hCCChHHHHHHHHHHhhHHHHH
Q 009951 383 RNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK-L--------FGYSMRTSFLVGVSLAQIGEFA 453 (521)
Q Consensus 383 ~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~-~--------~g~~~r~s~~lgl~L~~~Gefs 453 (521)
-.+++|.-....|.+++...+..++..++.+.+..++.-.+.+....+ . .+.++.+++..|..+++..-++
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVA 148 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVA 148 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHH
Confidence 357888888999999999999988665544433333333333222222 1 2458999999999999887654
Q ss_pred HH
Q 009951 454 FV 455 (521)
Q Consensus 454 lV 455 (521)
..
T Consensus 149 Vl 150 (559)
T TIGR00840 149 VL 150 (559)
T ss_pred HH
Confidence 44
No 71
>PRK04972 putative transporter; Provisional
Probab=61.73 E-value=79 Score=35.73 Aligned_cols=88 Identities=13% Similarity=0.200 Sum_probs=53.8
Q ss_pred hCchHHHHHHHHHHHhcCCCchhhHHHhhh-----cHHHHHHHHHHHHhcchhhHHhHhH---H-HHHHHHHHHHHHHHH
Q 009951 351 LGLSLELGSFMAGVMISTTDFAKHTLDQVE-----PIRNLFAALFLSSIGMLIHVHFLWN---H-VDILLASVILVIIVK 421 (521)
Q Consensus 351 lGls~~LGAFlAGl~ls~~~~~~~l~~~le-----~i~~~f~piFF~~iGl~ld~~~l~~---~-~~~il~lvll~vl~K 421 (521)
+++...-|+.++|++++..+......-++. .++++=+.+|.+.+|++--+.++.. + +.+++..+++.++.-
T Consensus 408 ~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~ 487 (558)
T PRK04972 408 FGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPV 487 (558)
T ss_pred eeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445566789999999998643333333333 3689999999999999988776543 2 222222233333333
Q ss_pred HHHHHHHHHHhCCChHH
Q 009951 422 TAVGTIVTKLFGYSMRT 438 (521)
Q Consensus 422 ~l~~~l~~~~~g~~~r~ 438 (521)
.++.++..+.+|.++-.
T Consensus 488 ~~~~~~~~~~~k~~~~~ 504 (558)
T PRK04972 488 VICFLFGAYVLRMNRAL 504 (558)
T ss_pred HHHHHHHHHHHcCCHHH
Confidence 33444444677888653
No 72
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=60.56 E-value=42 Score=31.46 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHhcCCCchh----hHHH-hhhcHHHHHHHHHHHHhcchhhHHhHhH---HH--HHHHHHHHHHHHHHH
Q 009951 353 LSLELGSFMAGVMISTTDFAK----HTLD-QVEPIRNLFAALFLSSIGMLIHVHFLWN---HV--DILLASVILVIIVKT 422 (521)
Q Consensus 353 ls~~LGAFlAGl~ls~~~~~~----~l~~-~le~i~~~f~piFF~~iGl~ld~~~l~~---~~--~~il~lvll~vl~K~ 422 (521)
+...-|++++|++++.....+ ++-. ....++++.+.+|...+|++--+.++.. +. .......++.++.-.
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~ 100 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTL 100 (154)
T ss_pred ecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 344568899999988764322 1212 2334679999999999999998877643 22 122222333333335
Q ss_pred HHHHHHHHHhCCChHH
Q 009951 423 AVGTIVTKLFGYSMRT 438 (521)
Q Consensus 423 l~~~l~~~~~g~~~r~ 438 (521)
+..+...+.+|.++..
T Consensus 101 ~~~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 101 LVAVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHHHhCCCHHH
Confidence 5556666778888643
No 73
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=60.37 E-value=2.2e+02 Score=29.68 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=29.2
Q ss_pred hhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHH
Q 009951 373 KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 406 (521)
Q Consensus 373 ~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~ 406 (521)
++..+.+.+++.++..+=|+.+|+++|+..+.+.
T Consensus 264 ~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~l~~~ 297 (305)
T PF03601_consen 264 AAVVSALKSLSKWLFALAMAAIGLSTNFKDLKQV 297 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHhc
Confidence 5667778888899999999999999999998764
No 74
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=59.65 E-value=1.6e+02 Score=30.12 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=58.6
Q ss_pred HHHHHHHhcchhhHHhHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH-HHHHHhhHHHHHHHHHHHHhh
Q 009951 387 AALFLSSIGMLIHVHFLWNHV---DILLASVILVIIVKTAVGTIVTKLFGYSMRTSFL-VGVSLAQIGEFAFVLLSRASN 462 (521)
Q Consensus 387 ~piFF~~iGl~ld~~~l~~~~---~~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~-lgl~L~~~GefslVlas~a~~ 462 (521)
+.+-+..+|+++++..+.+.. ......++.-.+.-++.++...+.++.+.....- +=.+.+|-|..+.+.+..+
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~-- 91 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLL-- 91 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHh--
Confidence 445567889999888876543 2344444555666677777777777665432221 1112456666666665543
Q ss_pred CCCChHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 009951 463 LHLVEGKMY-LLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 463 ~giIs~e~~-~lll~~~vlS~i~~Pll~~~~ 492 (521)
|- |.+.- ......++++.++.|++....
T Consensus 92 -~g-n~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 -KG-DMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred -CC-CHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222 333456667777778776654
No 75
>PRK04972 putative transporter; Provisional
Probab=58.36 E-value=1.9e+02 Score=32.70 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 353 LSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVT 429 (521)
Q Consensus 353 ls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~---~~~~il~lvll~vl~K~l~~~l~~ 429 (521)
+...-|++++|++++..... .-..++++.+.+|...+|++.-+.++.. +..-..++.+++++.-.+.++...
T Consensus 37 LG~~~g~L~vgl~~g~~~~~-----~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 111 (558)
T PRK04972 37 LGNSIGVLVVSLLLGQQHFS-----INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLG 111 (558)
T ss_pred cCcchHHHHHHHHHHhCCCC-----CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556889999999876432 1223468999999999999999887654 211222222333334455566677
Q ss_pred HHhCCChHHH
Q 009951 430 KLFGYSMRTS 439 (521)
Q Consensus 430 ~~~g~~~r~s 439 (521)
+++|.++-..
T Consensus 112 ~~~~~~~~~~ 121 (558)
T PRK04972 112 KLFGWDIGLT 121 (558)
T ss_pred HHhCCCHHHH
Confidence 8888886543
No 76
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=55.51 E-value=2.3e+02 Score=28.38 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=66.2
Q ss_pred hhhcHH-HHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHH
Q 009951 378 QVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVL 456 (521)
Q Consensus 378 ~le~i~-~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~GefslVl 456 (521)
-++|-. -+-.|+| =+.+.+.+++..++..+.+..+.-+..++..++.+|.+.. +..++.||+.-.-+-
T Consensus 64 lLgPAtVALAvPLY-------~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~----i~~Sl~pkSvTtpiA 132 (226)
T TIGR00659 64 LLGPAVVALAIPLY-------KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE----IIASLLPKSVTTPIA 132 (226)
T ss_pred hhHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHhhhHHhhHHHH
Confidence 344443 4556664 4556677777666655556566667888888899998733 233689999766666
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 457 LSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 457 as~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
...+.+.|-...-.....+.+-++-.+++|.++|+.
T Consensus 133 m~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 133 MHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667777766544333444455566677777777664
No 77
>PRK03818 putative transporter; Validated
Probab=50.80 E-value=3.1e+02 Score=31.02 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCC--chhhHHHhhh-cHHHHHHHHHHHHhcchhhHHhHhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 357 LGSFMAGVMISTTD--FAKHTLDQVE-PIRNLFAALFLSSIGMLIHVHFLWNH---VDILLASVILVIIVKTAVGTIVTK 430 (521)
Q Consensus 357 LGAFlAGl~ls~~~--~~~~l~~~le-~i~~~f~piFF~~iGl~ld~~~l~~~---~~~il~lvll~vl~K~l~~~l~~~ 430 (521)
-|++++|++++... ...++.+... .++++.+.+|...+|++.-+.++..- ..-..++-+++++.-.+.++...+
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHK 113 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888732 1112223333 36899999999999999998886542 111222223333333455666678
Q ss_pred HhCCChHH
Q 009951 431 LFGYSMRT 438 (521)
Q Consensus 431 ~~g~~~r~ 438 (521)
.+|.++-.
T Consensus 114 ~~~~~~~~ 121 (552)
T PRK03818 114 LFGIPLPV 121 (552)
T ss_pred HhCCCHHH
Confidence 88888653
No 78
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=50.01 E-value=2.8e+02 Score=28.29 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCC-chhhHHHhhhcHHHH-HHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009951 358 GSFMAGVMISTTD-FAKHTLDQVEPIRNL-FAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYS 435 (521)
Q Consensus 358 GAFlAGl~ls~~~-~~~~l~~~le~i~~~-f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~~ 435 (521)
--++.|+.++... ..++..+++.++..+ +.-+.+..++.+. ..++.+...+....++..+.-+..++...+.+|.+
T Consensus 145 vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~ 222 (286)
T TIGR00841 145 IPVSIGMLVKHKLPQIAKIILKVGLISVFLLSVIIAVVGGINV--ENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLP 222 (286)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhCchHHHHHHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455566655431 111222234444432 2222233333332 33444433333334444556677778888888887
Q ss_pred hHHHHHHHHHHhhH-HHHHHHHHHHHh
Q 009951 436 MRTSFLVGVSLAQI-GEFAFVLLSRAS 461 (521)
Q Consensus 436 ~r~s~~lgl~L~~~-GefslVlas~a~ 461 (521)
.+++..+++....| +..++.++....
T Consensus 223 ~~~~~t~~~~~g~qN~~lal~la~~~f 249 (286)
T TIGR00841 223 WARCRTISIEVGMQNSQLCSTIAQLSF 249 (286)
T ss_pred HhhheeeeeeeecccHHHHHHHHHHhc
Confidence 66665544443332 346666665443
No 79
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=49.52 E-value=3.9e+02 Score=29.25 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcch-hhHHhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHHHHHhhHHHH-HHHHHH
Q 009951 383 RNLFAALFLSSIGML-IHVHFLWNHVDI-LLASVILVIIVKTAVGTIVTKLFGYSMRT-SFLVGVSLAQIGEF-AFVLLS 458 (521)
Q Consensus 383 ~~~f~piFF~~iGl~-ld~~~l~~~~~~-il~lvll~vl~K~l~~~l~~~~~g~~~r~-s~~lgl~L~~~Gef-slVlas 458 (521)
..-+.+...+-+|+. +|++.+.....+ -++.++..+++-.++++++.|+.|+-+-| ++..|+.++.+|.- .+.+.+
T Consensus 306 ~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLs 385 (414)
T PF03390_consen 306 SKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLS 385 (414)
T ss_pred HHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchhee
Confidence 355666667788888 899888776433 24455566777788899999999976655 45567788888842 344555
Q ss_pred HHhhCCCCh
Q 009951 459 RASNLHLVE 467 (521)
Q Consensus 459 ~a~~~giIs 467 (521)
-+.+.+++.
T Consensus 386 Aa~RM~Lmp 394 (414)
T PF03390_consen 386 AANRMELMP 394 (414)
T ss_pred hhhhccccc
Confidence 555555544
No 80
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=49.03 E-value=2e+02 Score=30.08 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCC-chhhHHHhhhcHH-HHHHHHH-HHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009951 359 SFMAGVMISTTD-FAKHTLDQVEPIR-NLFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYS 435 (521)
Q Consensus 359 AFlAGl~ls~~~-~~~~l~~~le~i~-~~f~piF-F~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~~g~~ 435 (521)
..+.|...+..+ ..++..+.+..+. .+++|.+ |..+.-..+...+.+.+...+.. ++..+.-++..++..++++.+
T Consensus 12 ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 90 (385)
T PF03547_consen 12 IILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFA-FIIFILGLLLGFLLSRLFRLP 90 (385)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 344455554432 3455556677764 7999987 56666656565555544332222 233333355566666766666
Q ss_pred hHHHH--HHHHHHhhHHHHHHHHHHHH
Q 009951 436 MRTSF--LVGVSLAQIGEFAFVLLSRA 460 (521)
Q Consensus 436 ~r~s~--~lgl~L~~~GefslVlas~a 460 (521)
++++. ..+.+...-|-+++-+...-
T Consensus 91 ~~~~~~~~~~~~~~N~~~lglpi~~~l 117 (385)
T PF03547_consen 91 KEWRGVFVLAASFGNTGFLGLPILQAL 117 (385)
T ss_pred cccceEEEecccCCcchhhHHHHHHHH
Confidence 55443 33444566666666555443
No 81
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=48.75 E-value=3.3e+02 Score=28.29 Aligned_cols=136 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 355 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH---VDILLASVILVIIVKTAVGTIVTKL 431 (521)
Q Consensus 355 ~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~---~~~il~lvll~vl~K~l~~~l~~~~ 431 (521)
..+.+.+.|...+......... +.|........+-|...|++++...+.+. |...+......++.=.+.++...+.
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~-~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l 84 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVI-KPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRL 84 (313)
T ss_pred HHHHHHHHHHHcCcccccCCcc-chhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hCCChHHHHHHHHHHhhHH--HHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 432 FGYSMRTSFLVGVSLAQIG--EFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 432 ~g~~~r~s~~lgl~L~~~G--efslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
.+....+.+..|+....-- .++-.++-.....|-....+++.. ...++..+++|++..++
T Consensus 85 ~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~-~snllgv~ltP~ll~l~ 146 (313)
T PF13593_consen 85 FPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAV-LSNLLGVFLTPLLLLLL 146 (313)
T ss_pred hhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHH-HHhhhhHhHHHHHHHHH
No 82
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=48.61 E-value=2.9e+02 Score=31.28 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHhcCCCchhh----HHHh-hhcHHHHHHHHHHHHhcchhhHHhHhH---HHHHHHHHHHHHHHHHHHH
Q 009951 353 LSLELGSFMAGVMISTTDFAKH----TLDQ-VEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAV 424 (521)
Q Consensus 353 ls~~LGAFlAGl~ls~~~~~~~----l~~~-le~i~~~f~piFF~~iGl~ld~~~l~~---~~~~il~lvll~vl~K~l~ 424 (521)
+....|++++|++++.....+. +-+. ...++++.+.+|.+.+|++--+.++.. +...+.++-+++.+.-.+.
T Consensus 415 lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~ 494 (562)
T TIGR03802 415 LGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLII 494 (562)
T ss_pred ehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4566799999999987532221 2222 233679999999999999998877643 2222222222333333344
Q ss_pred HHHHH-HHhCCChHH
Q 009951 425 GTIVT-KLFGYSMRT 438 (521)
Q Consensus 425 ~~l~~-~~~g~~~r~ 438 (521)
+++.. +.+|.++-.
T Consensus 495 ~~~~~~~~~~~~~~~ 509 (562)
T TIGR03802 495 TMLIGKYVLKYDPAL 509 (562)
T ss_pred HHHHHHHHhCCCHHH
Confidence 55555 678887643
No 83
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=48.39 E-value=3.5e+02 Score=28.48 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHhhHH-HHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 420 VKTAVGTIVTKLFGYSMRTSFLVGVSLAQIG-EFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 420 ~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~G-efslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
.-+..+|...|.+|+++.++..+.+.-..+. ..+..++.. +-.+ ++...-.......-.+.++++.+++
T Consensus 235 lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~-f~~~---~~~alP~aif~~~q~~~~a~la~~~ 304 (319)
T COG0385 235 LGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAA-FFGN---PLMALPLAIFSVWQNMSGAVLAGLY 304 (319)
T ss_pred HHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHh-cCCC---chhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3377888889999999888776544322222 344455544 2111 4444344444455566777777774
No 84
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=47.61 E-value=3e+02 Score=29.00 Aligned_cols=109 Identities=18% Similarity=0.178 Sum_probs=68.3
Q ss_pred hhhcHHHHHHHHHHHHhcchhhHHhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH---HhhHHH
Q 009951 378 QVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVS---LAQIGE 451 (521)
Q Consensus 378 ~le~i~~~f~piFF~~iGl~ld~~~l~~---~~~~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~---L~~~Ge 451 (521)
.+++....+..+.|...|+.+...++.. +|...+..+++-++.=.+.++...+.++.+. .+++|+. ..|-|.
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~--~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPP--ELAVGLLLLGCCPGGV 112 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHhHHheeeCCCch
Confidence 4444456777777888999998887654 5655566666666667788888888877553 4555554 456677
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 452 FAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKL 491 (521)
Q Consensus 452 fslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~ 491 (521)
.+.+.++.|. |-..-.+. .....++++.+++|++..+
T Consensus 113 ~S~~~t~lAk--GnValsV~-~tsvStll~~f~tPllv~l 149 (319)
T COG0385 113 ASNAMTYLAK--GNVALSVC-STSVSTLLGPFLTPLLVGL 149 (319)
T ss_pred hHHHHHHHhc--CcHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 7777777663 32222211 1123445566677777666
No 85
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=46.96 E-value=1.2e+02 Score=32.63 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcchhhHHhHhH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l~~ 405 (521)
++|.+..+||..+|+.+.-..+..
T Consensus 60 iNDgLMaiFFf~vGLEiKrE~~~G 83 (383)
T PRK14854 60 INDGLMAIYFLYIGLEIKREIIVG 83 (383)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999998766543
No 86
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=46.60 E-value=4e+02 Score=28.61 Aligned_cols=150 Identities=14% Similarity=0.192 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHhcCCCch--hhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 354 SLELGSFMAGVMISTTDFA--KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 431 (521)
Q Consensus 354 s~~LGAFlAGl~ls~~~~~--~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~~~~ 431 (521)
++.+=+++.|++++|...- ....+.-+.+++.+.|+=-...=++.|+..++....-.+...++..++-.+++.+....
T Consensus 26 ~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~l 105 (378)
T PF05684_consen 26 PGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFLL 105 (378)
T ss_pred CHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666655321 11222334456777777766677789999998875555555555555666666665555
Q ss_pred hCCC-hHHHHHHHHHHhh--H-HHHHHHHHHHHhhCCCChHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhhhccCC
Q 009951 432 FGYS-MRTSFLVGVSLAQ--I-GEFAFVLLSRASNLHLVEGKMYLLLLG-TTALSLVTTPLLFKLIPNVMNLGILLHWFP 506 (521)
Q Consensus 432 ~g~~-~r~s~~lgl~L~~--~-GefslVlas~a~~~giIs~e~~~lll~-~~vlS~i~~Pll~~~~~~i~~~~~~~~~~~ 506 (521)
++.. -.|.|-+.-.+.. . |...++-...++ + .+++.+...+. =.+++.+--++++.. |+.. ....||.+
T Consensus 106 ~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al--~-~~~~~~~a~~aaDnv~~~~~~~~l~~l-~~~~--~~~~~~~~ 179 (378)
T PF05684_consen 106 FGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEAL--G-VSDSLFAAALAADNVVMALWFAFLLAL-PPFA--RKFDRWTK 179 (378)
T ss_pred HhhcccchHHHHHHHHHhcccCchhHHHHHHHHH--C-CCHHHHHHHHHHHHHHHHHHHHHHHHH-hhhh--HHhhhccC
Confidence 5433 2333332211111 1 234444444443 3 35666655432 223333333333333 2221 13566766
Q ss_pred CCC
Q 009951 507 SEG 509 (521)
Q Consensus 507 ~~~ 509 (521)
+++
T Consensus 180 ~~~ 182 (378)
T PF05684_consen 180 ADT 182 (378)
T ss_pred CCc
Confidence 543
No 87
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=46.09 E-value=1.5e+02 Score=28.11 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=54.6
Q ss_pred hCchHHHHHHHHHHHhcCCCchhh--HHHh-hhcHHHHHHHHHHHHhcchhhHHhHhH---HHHHHHHHHHHHHHHHHHH
Q 009951 351 LGLSLELGSFMAGVMISTTDFAKH--TLDQ-VEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAV 424 (521)
Q Consensus 351 lGls~~LGAFlAGl~ls~~~~~~~--l~~~-le~i~~~f~piFF~~iGl~ld~~~l~~---~~~~il~lvll~vl~K~l~ 424 (521)
+.+...-|++++|++++....... .... -+.++++.+.+|...+|++.-+.++.. +..-...+-+++.+.-.+.
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~ 100 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLI 100 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445556688888888886632111 1222 234579999999999999998887643 2222233333444445556
Q ss_pred HHHHHH-HhCCChHH
Q 009951 425 GTIVTK-LFGYSMRT 438 (521)
Q Consensus 425 ~~l~~~-~~g~~~r~ 438 (521)
++...+ ++|.++-.
T Consensus 101 ~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 101 ALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHcCCCHHH
Confidence 666666 88888544
No 88
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=45.42 E-value=3.9e+02 Score=29.32 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcchhhHHhH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFL 403 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l 403 (521)
++|.+..+||..+|+.+.-..+
T Consensus 66 iNDgLMaiFFf~vGLEiKrE~~ 87 (423)
T PRK14853 66 AADGLLAIFFFVVGLELKREFV 87 (423)
T ss_pred HHHhhHHHHHHHHHHHHhHHHh
Confidence 4689999999999999965544
No 89
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=43.99 E-value=1.2e+02 Score=33.07 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcchhhHHhHhH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l~~ 405 (521)
++|-+..+||..+|+.+.-..+..
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~G 90 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLIG 90 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 468999999999999998776643
No 90
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=40.28 E-value=1.9e+02 Score=26.87 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCChH---HHHHHH--HHHhhCcCCccchHHHHH----------------------
Q 009951 165 DLRLISDLVVVIVSAAIGGIIFSCLGQPV---IVGYLL--AGSIIGPGGLKFISELVQ---------------------- 217 (521)
Q Consensus 165 d~~li~~l~lil~~a~i~g~l~~rlglP~---ivGyIl--aGilLGPsgLglI~~~~q---------------------- 217 (521)
..+++.++++++.+..+.-.+.+-+++|. ++|.++ ..+..+..-...+++..+
T Consensus 6 ~~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVPagVGim~~~~ 85 (141)
T PRK04125 6 VYSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLCTKVVKLEQVESLGTALTNNIGFLFVPSGISVINSLG 85 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhhHhHHHHhHH
Confidence 45788899999888777777777777653 566544 233333333333333221
Q ss_pred ---HhcCchHHHHHHHHHhhcccHHHHHHHHHhc
Q 009951 218 ---LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQ 248 (521)
Q Consensus 218 ---l~G~~~~~al~iG~~ls~TStavv~~iL~e~ 248 (521)
--+++...+++++.++.+..|+.+.+.+...
T Consensus 86 ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~r~ 119 (141)
T PRK04125 86 VMSQYPVQIIGVIIVATILLLACTGLFSQFILGK 119 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1124556677777777777888877776543
No 91
>PRK01658 holin-like protein; Validated
Probab=40.00 E-value=2.2e+02 Score=25.68 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChH---HHHHHH--HHHhhCcCCccchHHHHH-----------------------
Q 009951 166 LRLISDLVVVIVSAAIGGIIFSCLGQPV---IVGYLL--AGSIIGPGGLKFISELVQ----------------------- 217 (521)
Q Consensus 166 ~~li~~l~lil~~a~i~g~l~~rlglP~---ivGyIl--aGilLGPsgLglI~~~~q----------------------- 217 (521)
.+++.++++++....+...+.+.+++|. ++|.++ .....|..-...+++..+
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~~~~ik~~~v~~~a~~Ll~~m~llFVPa~VGi~~~~~l 83 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLSFKILKLKWIELGAETLLAELPLFFIPSAVGVMNYGDF 83 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHH
Q ss_pred --HhcCchHHHHHHHHHhhcccHHHHHHHHHhcccCCcc
Q 009951 218 --LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNAL 254 (521)
Q Consensus 218 --l~G~~~~~al~iG~~ls~TStavv~~iL~e~~~l~s~ 254 (521)
--+++...+++++..+....|+.+.+.+.+++..+.+
T Consensus 84 l~~~~~~il~~ivvsT~l~l~vtg~~~~~l~~~~~~~~~ 122 (122)
T PRK01658 84 LSSKGISLFLVVVISTFVVMIVTGYLTQLLAKRKEREQR 122 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
No 92
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=39.19 E-value=3.4e+02 Score=25.64 Aligned_cols=98 Identities=20% Similarity=0.175 Sum_probs=47.8
Q ss_pred HHHhcchhhHHhHhHH---HHHHHHHHHHHHHHHHHHHHHHH-HHhCCChHHHH-HHHHHHhhHHHHHHHHHHHHhhCCC
Q 009951 391 LSSIGMLIHVHFLWNH---VDILLASVILVIIVKTAVGTIVT-KLFGYSMRTSF-LVGVSLAQIGEFAFVLLSRASNLHL 465 (521)
Q Consensus 391 F~~iGl~ld~~~l~~~---~~~il~lvll~vl~K~l~~~l~~-~~~g~~~r~s~-~lgl~L~~~GefslVlas~a~~~gi 465 (521)
-...|.++++.++.+. +..++..++.-++...+.++... ++++.+...+. .+=.+.+|-|..+.+.+..+. |-
T Consensus 8 mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~--Gd 85 (187)
T PF01758_consen 8 MFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLAG--GD 85 (187)
T ss_dssp HHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHTT----
T ss_pred HHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHhC--CC
Confidence 4567777777776653 34444445556666777777777 56555544322 122335566666666655431 21
Q ss_pred ChHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 009951 466 VEGKMY-LLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 466 Is~e~~-~lll~~~vlS~i~~Pll~~~~ 492 (521)
...- ......++++.++.|++..++
T Consensus 86 --~~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 86 --VALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccccceeeHHHHHHHHHHHHHHHHH
Confidence 1111 112234455666667776654
No 93
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=38.02 E-value=1.7e+02 Score=32.21 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcchhhHHhHhH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l~~ 405 (521)
++|.+..+||..+|+.+.-..+..
T Consensus 72 INDgLMaiFFf~VGLEIKrE~~~G 95 (438)
T PRK14856 72 IDDVLMALFFLMIGLEIKRELLFG 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468999999999999998776543
No 94
>COG3329 Predicted permease [General function prediction only]
Probab=36.22 E-value=3.5e+02 Score=28.52 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=71.1
Q ss_pred chHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcc----hhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 353 LSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGM----LIHVHFLWNHVDILLASVILVIIVKTAVGTIV 428 (521)
Q Consensus 353 ls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl----~ld~~~l~~~~~~il~lvll~vl~K~l~~~l~ 428 (521)
.||.+.-|+.|++++..+..-++-+ ++...+.-.....+|. .+..+.+.......+..+.+.++.-++..++.
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~---~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l 92 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPE---AIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLL 92 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCch---HHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888875432211111 2222223333445554 44455555444444444555566667777778
Q ss_pred HHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHH
Q 009951 429 TKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLL 473 (521)
Q Consensus 429 ~~~~g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~l 473 (521)
.++.+.+..++..++-.....+...+.-+..-.+.--+.-|-|..
T Consensus 93 ~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~ 137 (372)
T COG3329 93 RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMP 137 (372)
T ss_pred HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHH
Confidence 888899999999988878888877777766555443345555543
No 95
>PRK09371 gas vesicle synthesis protein GvpA; Provisional
Probab=35.93 E-value=26 Score=28.21 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHhccC
Q 009951 56 SGDGSIAKMFDRVLEKEF 73 (521)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~ 73 (521)
++..++|+++||.|+|--
T Consensus 4 ~~s~sLadvldriLDKGi 21 (68)
T PRK09371 4 PDSSSLAEVIDRILDKGI 21 (68)
T ss_pred CCcccHHHHHHHHccCCe
Confidence 345699999999998743
No 96
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.77 E-value=5.1e+02 Score=32.55 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=18.0
Q ss_pred CchHHHHHHHHHHHhcCCCchhhHHHhhhcHHHHHHHHHHHHhcc
Q 009951 352 GLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGM 396 (521)
Q Consensus 352 Gls~~LGAFlAGl~ls~~~~~~~l~~~le~i~~~f~piFF~~iGl 396 (521)
+.-+.+|++++.+++. +-.+..+++|++|++.+.
T Consensus 62 Nl~GiVGA~LAD~L~~-----------LFGl~AYLLP~LL~~~a~ 95 (1355)
T PRK10263 62 NLGGMPGAWLADTLFF-----------IFGVMAYTIPVIIVGGCW 95 (1355)
T ss_pred cccchHHHHHHHHHHH-----------HHhHHHHHHHHHHHHHHH
Confidence 4456677777766552 222345555555554443
No 97
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=33.34 E-value=5.8e+02 Score=26.60 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCC-chhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 357 LGSFMAGVMISTTD-FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH---VDILLASVILVIIVKTAVGTIVTKLF 432 (521)
Q Consensus 357 LGAFlAGl~ls~~~-~~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~---~~~il~lvll~vl~K~l~~~l~~~~~ 432 (521)
+|+.++..+.+... ..- ..=.++++....+-=+.+|.+++++.+.+- +..++...+..++.-.+..++..|..
T Consensus 3 lG~~ia~~~~~~~~~~~~---~~p~~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~ 79 (318)
T PF05145_consen 3 LGPMIAVIIAALFGPLPL---RVPRRLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRIS 79 (318)
T ss_pred hHHHHHHHHHHHhCCCcc---CCCHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56666666655332 111 111223455566667889999998876653 33344555556667778888888999
Q ss_pred CCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 009951 433 GYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTA-LSLVTTPLLFKLIP 493 (521)
Q Consensus 433 g~~~r~s~~lgl~L~~~GefslVlas~a~~~giIs~e~~~lll~~~v-lS~i~~Pll~~~~~ 493 (521)
++|..++++- ..|-|--+.+. .|.+.|- |...-.+....=+ +-..+.|++..+..
T Consensus 80 ~~d~~TA~~~---~~PGg~s~m~~--la~~~ga-d~~~Va~~q~lRl~~Vv~~vP~i~~~~~ 135 (318)
T PF05145_consen 80 GLDRATAFFA---SMPGGLSEMVA--LAEEYGA-DTRRVALVQSLRLLLVVLLVPFIASLLG 135 (318)
T ss_pred CCChhHHHHH---cCCccHHHHHH--HHHHcCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998888764 34666555544 3355553 3333333322222 22334577776653
No 98
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=32.41 E-value=6.3e+02 Score=26.74 Aligned_cols=35 Identities=11% Similarity=0.286 Sum_probs=29.2
Q ss_pred hhhHHHhhhcHHHHHHHHHHHHhcchhhHHhHhHH
Q 009951 372 AKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 406 (521)
Q Consensus 372 ~~~l~~~le~i~~~f~piFF~~iGl~ld~~~l~~~ 406 (521)
.+...+.+..++.++..+=++.+|+++|++.+.+.
T Consensus 271 p~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l~~~ 305 (335)
T TIGR00698 271 PGEVVQALVPLDTFLLATAMAALGLTTNVSAVKKA 305 (335)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHc
Confidence 34566677888889999999999999999999764
No 99
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=31.99 E-value=6.7e+02 Score=27.28 Aligned_cols=82 Identities=20% Similarity=0.309 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcch-hhHHhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHhhHHHH-HHHHHHHH
Q 009951 385 LFAALFLSSIGML-IHVHFLWNHVDI-LLASVILVIIVKTAVGTIVTKLFGYSMRTS-FLVGVSLAQIGEF-AFVLLSRA 460 (521)
Q Consensus 385 ~f~piFF~~iGl~-ld~~~l~~~~~~-il~lvll~vl~K~l~~~l~~~~~g~~~r~s-~~lgl~L~~~Gef-slVlas~a 460 (521)
+--|+ .+.+|.. +|+..+.....+ -++..+.++++-..+.+++.|+.++-+-|+ +..|+.++.+|.- .+.+.+-+
T Consensus 328 ~t~~L-m~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa 406 (438)
T COG3493 328 LTWPL-MAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSAA 406 (438)
T ss_pred hHHHH-HHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhhc
Confidence 33343 3456666 677776654322 234445566777888999999998655555 4556999999853 34455555
Q ss_pred hhCCCCh
Q 009951 461 SNLHLVE 467 (521)
Q Consensus 461 ~~~giIs 467 (521)
-+.++++
T Consensus 407 ~RM~Lmp 413 (438)
T COG3493 407 DRMELMP 413 (438)
T ss_pred chhcccc
Confidence 5556554
No 100
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=31.91 E-value=6.5e+02 Score=28.07 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcchhhHHhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHH
Q 009951 383 RNLFAALFLSSIGMLIHVHFLWNHVDIL-LASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIG 450 (521)
Q Consensus 383 ~~~f~piFF~~iGl~ld~~~l~~~~~~i-l~lvll~vl~K~l~~~l~~~~~g~~~r~s~~lgl~L~~~G 450 (521)
.++.+.+-..--|+..+++......... ...++.+++.-.+......+.++.+|.|++.+|...+..-
T Consensus 64 g~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTD 132 (574)
T COG3263 64 GNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTD 132 (574)
T ss_pred HHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhcccc
Confidence 4566666666778888887766543332 3345555666666677777889999999999988665543
No 101
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=30.93 E-value=5.8e+02 Score=27.87 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=17.5
Q ss_pred hhhhhhhhhhccCCCCCCCccccccCCCC
Q 009951 493 PNVMNLGILLHWFPSEGTPRSEAHRGLRF 521 (521)
Q Consensus 493 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (521)
|..++--....|--.+.....|.-|+|+|
T Consensus 324 pe~L~~~~~~~l~~~~~i~~idtv~~y~~ 352 (412)
T KOG1485|consen 324 PEYLEIITYLILQHGKLIKHIDTVRAYTF 352 (412)
T ss_pred HHHHHHHHHHHHhhcCccccceeeeeecc
Confidence 55555444555544456667777788775
No 102
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=28.90 E-value=1.4e+02 Score=35.13 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=23.9
Q ss_pred HhhhcHHHHHHHHHHHHhcchhhHHhHhHHH
Q 009951 377 DQVEPIRNLFAALFLSSIGMLIHVHFLWNHV 407 (521)
Q Consensus 377 ~~le~i~~~f~piFF~~iGl~ld~~~l~~~~ 407 (521)
..++.+.++-.-+|.+.+|+.+|...+..+.
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~ 112 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTG 112 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccC
Confidence 3455566666778889999999999987653
No 103
>PRK01821 hypothetical protein; Provisional
Probab=28.66 E-value=3.7e+02 Score=24.58 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHhhcCChH---HHH--HHHHHHhhCcCCccchHHHHH-------------------
Q 009951 162 LQVDLRLISDLVVVIVSAAIGGIIFSCLGQPV---IVG--YLLAGSIIGPGGLKFISELVQ------------------- 217 (521)
Q Consensus 162 l~~d~~li~~l~lil~~a~i~g~l~~rlglP~---ivG--yIlaGilLGPsgLglI~~~~q------------------- 217 (521)
++...+++.++++++.+..+...+.+-+++|. ++| .++.....|..-...+++..+
T Consensus 5 ~~~~~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~~~vk~~~v~~~a~~LL~~m~LfFVPa~VGim~ 84 (133)
T PRK01821 5 LNIIWQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQILPAKWVKPGCSLLIRYMALLFVPIGVGVMQ 84 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred ------HhcCchHHHHHHHHHhhcccHHHHHHHHHhcc
Q 009951 218 ------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQN 249 (521)
Q Consensus 218 ------l~G~~~~~al~iG~~ls~TStavv~~iL~e~~ 249 (521)
--+++...+++++.++....|+.+.+.+..++
T Consensus 85 ~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~~~~ 122 (133)
T PRK01821 85 YYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVHGER 122 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 104
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=28.58 E-value=5.4e+02 Score=26.41 Aligned_cols=105 Identities=12% Similarity=0.028 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHh-cCC-CchhhHHHhhhcHH-HHHHHHHHHHhcchhhHH-hHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009951 355 LELGSFMAGVMI-STT-DFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVH-FLWNHVDILLASVILVIIVKTAVGTIVTK 430 (521)
Q Consensus 355 ~~LGAFlAGl~l-s~~-~~~~~l~~~le~i~-~~f~piFF~~iGl~ld~~-~l~~~~~~il~lvll~vl~K~l~~~l~~~ 430 (521)
+.+.....|... +.. ...++..+.+..+. ++..|......-.+.+.+ .....+. .........++-++.++...+
T Consensus 12 pv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 90 (321)
T TIGR00946 12 PILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSP-VVLFLWGAFSGSYALIWLITK 90 (321)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666 343 34556666777764 899999877666665553 1111122 122222333344555566566
Q ss_pred -HhCCChHHHH--HHHHHHhhHHHHHHHHHHHH
Q 009951 431 -LFGYSMRTSF--LVGVSLAQIGEFAFVLLSRA 460 (521)
Q Consensus 431 -~~g~~~r~s~--~lgl~L~~~GefslVlas~a 460 (521)
.++.+.+++. ..+......|-+++-++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~ 123 (321)
T TIGR00946 91 PLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL 123 (321)
T ss_pred HHHhcccchhhHHHHHhhhccceeehHHHHHHH
Confidence 5565554433 33444455554444444433
No 105
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=26.93 E-value=5.1e+02 Score=23.98 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=26.1
Q ss_pred HhhhcHHHHH---HHHHH--HHhcchhhHHhHhHHHHHHHHHHHHHHHHHHHH
Q 009951 377 DQVEPIRNLF---AALFL--SSIGMLIHVHFLWNHVDILLASVILVIIVKTAV 424 (521)
Q Consensus 377 ~~le~i~~~f---~piFF--~~iGl~ld~~~l~~~~~~il~lvll~vl~K~l~ 424 (521)
+.+++-.+++ +++|| +.+|.--..+.+.+++..+++.+++..+.=++.
T Consensus 56 ~~v~~~a~~LL~~m~LfFVPagVGim~~~~ll~~~~~~Il~~ivvSTllvl~v 108 (141)
T PRK04125 56 EQVESLGTALTNNIGFLFVPSGISVINSLGVMSQYPVQIIGVIIVATILLLAC 108 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554433 56777 566776667777777655444433333333333
No 106
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=26.57 E-value=2.9e+02 Score=29.88 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcchhhHHhHhH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l~~ 405 (521)
++|.+..+||..+|+.+.-..+..
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~G 86 (388)
T PRK09561 63 INDGLMAVFFLLIGLEVKRELLEG 86 (388)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999998776643
No 107
>PRK05346 Na(+)-translocating NADH-quinone reductase subunit C; Provisional
Probab=26.51 E-value=55 Score=33.29 Aligned_cols=91 Identities=12% Similarity=0.235 Sum_probs=51.5
Q ss_pred CCCcchhhHHHHHHHHHHHhhhcccccCChHHHhhhhhccccCCCcCCCCCCcHHHHHHHHHhccCCCCcCCCC--CCCC
Q 009951 8 GGGAVFGIGYCLVLVLVLVYSRICMSARSDKETRQRFYGNLVNTTEEDSGDGSIAKMFDRVLEKEFPDNEQSSG--SDGS 85 (521)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 85 (521)
+.-..|.+.+|++|++++.+.......+.++..+...--|+.+...-.. .+.+.+.|++-++.++-+.++-+- .+..
T Consensus 9 ~~ti~~a~~l~lVcs~~vs~~a~~Lk~~q~~N~~ld~~~nIL~aag~~~-~~~v~~~f~~~i~~~lv~l~~G~~~~~~~~ 87 (256)
T PRK05346 9 GKTLIVVVVLCLVCSVIVAGAAVGLKPRQEENKLLDKQKNILAAAGLVT-KKDVLELYAKRIEPRLVDLATGELVEGDPA 87 (256)
T ss_pred ceEEEEEeehHHHHHHHHHHHHHHhccHHHHhHHHHHHHHHHHHCCCCC-chhHHHHHhhceeeEEEEcCCCCEeccccc
Confidence 4456788899999999998886544444443332222223222111111 236889998877666655554432 2355
Q ss_pred Ccchhhhhccceee
Q 009951 86 SFNSSVADQQAVLE 99 (521)
Q Consensus 86 ~f~~~~~~~~~~~e 99 (521)
.||...+.+.....
T Consensus 88 ~~d~~~a~~~~~~s 101 (256)
T PRK05346 88 TFDERKAAKDPATS 101 (256)
T ss_pred ccchhhhhcChhhh
Confidence 67776665544333
No 108
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=25.82 E-value=2.9e+02 Score=29.94 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcchhhHHhHhH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l~~ 405 (521)
++|.+..+||..+|+.+.-..+..
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~G 86 (389)
T PRK09560 63 INDGLMAVFFLLVGLEIKRELLEG 86 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999998766543
No 109
>TIGR02871 spore_ylbJ sporulation integral membrane protein YlbJ. Members of this protein family are found exclusively in Firmicutes (low-GC Gram-positive bacterial) and are known from studies in Bacillus subtilis to be part of the sigma-E regulon. Mutation leads to a sporulation defect, confirming that members of this protein family, YlbJ, are sporulation proteins. This protein appears to be universal among endospore-forming bacteria, but is encoded by a pair ORFs distant from eash other in Symbiobacterium thermophilum IAM14863.
Probab=23.45 E-value=7.7e+02 Score=26.42 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCChHHHHH-HHHHHhhC-cCCccchHHHHHHhcCchHHHHHHHHHhhcccHHHHHH
Q 009951 167 RLISDLVVVIVSAAIGGIIFSC-LGQPVIVGY-LLAGSIIG-PGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVK 243 (521)
Q Consensus 167 ~li~~l~lil~~a~i~g~l~~r-lglP~ivGy-IlaGilLG-PsgLglI~~~~ql~G~~~~~al~iG~~ls~TStavv~~ 243 (521)
+++.+..++=..+.+++.++++ +|+|.--++ +++|.+-| |.|.....+..|-=-++..|+-.+......+||.-+.-
T Consensus 49 ~lLi~~G~~~~~g~ll~pimrplf~lpg~~a~~li~g~l~GyP~Ga~~t~~ly~~g~it~~Ea~~Ll~f~nnssPlFiig 128 (362)
T TIGR02871 49 ELLINLGGVHFYGKLLEPILRPPFRVPGVGSFALVMGFLSGYPLGAKYSADLYEEKLITFEEAERLLNFANNSGPLFIIG 128 (362)
T ss_pred HHHHHcChHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHcCCchHHHHHHHHHHCCCCCHHHHHHHHHHHcCCChHHHHH
Confidence 3444555555556666666664 566665553 33444443 33333333332211124555555555666666655555
Q ss_pred HHHhcccCCcchHHHHHHHHHHHHHHHHHHH
Q 009951 244 FLVEQNSNNALHGQVTIGTLILQDCAVGLLF 274 (521)
Q Consensus 244 iL~e~~~l~s~~g~iiL~~avl~Dv~~~il~ 274 (521)
.+...-..+...|-+++.+-.+..+.+.+++
T Consensus 129 ~V~~~~l~~~~lg~~l~~~~yl~~l~~gll~ 159 (362)
T TIGR02871 129 AVGTSMLNNPTLGYILLISHYLSCITMGLIL 159 (362)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4443323344555555555544444444433
No 110
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=21.99 E-value=4.6e+02 Score=28.26 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcchhhHHhHhH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFLWN 405 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l~~ 405 (521)
++|.+..+||..+|+.+.-..+..
T Consensus 56 iNDgLMaiFFf~vGlEiKrE~~~G 79 (373)
T TIGR00773 56 INDGLMAVFFLLIGLEVKRELLEG 79 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999998776543
No 111
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=21.62 E-value=1.2e+02 Score=28.09 Aligned_cols=32 Identities=34% Similarity=0.723 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhcCCh--HHHHHHHHHHhhC
Q 009951 174 VVIVSAAIGGIIFSCLGQP--VIVGYLLAGSIIG 205 (521)
Q Consensus 174 lil~~a~i~g~l~~rlglP--~ivGyIlaGilLG 205 (521)
+.+.++.+++++++++|+| .++|-++++.++.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~ 35 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLS 35 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 4566788999999999998 5666665555544
No 112
>PF13642 DUF4144: protein structure with unknown function; PDB: 2L6O_A.
Probab=21.48 E-value=48 Score=28.93 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=12.4
Q ss_pred cccceeeeccCCeeeeccCCCCCc
Q 009951 137 DDEMTLIDKKDNVFVMSNKKSKYP 160 (521)
Q Consensus 137 ~~~~~lid~~~n~~~~s~~~~~~~ 160 (521)
.+-++|||+.++.|.+..+.+..+
T Consensus 32 ~~~D~LIDs~G~~y~l~~~~~~~~ 55 (101)
T PF13642_consen 32 SDDDRLIDSQGQSYQLKQSNSNKL 55 (101)
T ss_dssp -TT--EEETT-EEEEE-T-----T
T ss_pred CCCCEEEeCCCCEEEeccccccch
Confidence 456799999999999988555443
No 113
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=21.21 E-value=7.3e+02 Score=26.85 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCchhHH-----------HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchhhHHHhhhcHH-
Q 009951 316 PRFLKLMIQLSSQTNELY-----------QLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIR- 383 (521)
Q Consensus 316 ~~llr~l~~~~~~~~El~-----------ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~~~~~~l~~~le~i~- 383 (521)
|++.|.+...+.+.-... +++-+..+..++.+.-.. .+.+|++..|-.+++... +++.+..+.--
T Consensus 204 PpimklLttkkER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~P~a--~pLig~Lm~GNllrEsGv-~rLs~taqn~l~ 280 (399)
T TIGR03136 204 PYLIKLLVPKKYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLLPVA--SPLILSFFLGVAIKEAQI-EPYQNLLEKTLT 280 (399)
T ss_pred chHHHhhcCHHHHcccCccCCCCCCccchhHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHhCc-HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhcchhhHHhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009951 384 NLFAALFLSSIGMLIHVHFLWN-HVDILLASVILVIIVKTAVGTIVTKLF 432 (521)
Q Consensus 384 ~~f~piFF~~iGl~ld~~~l~~-~~~~il~lvll~vl~K~l~~~l~~~~~ 432 (521)
+....+.=..+|...+-..+.+ ....++++=++.+..-..+..+..|+.
T Consensus 281 nivTifLGl~vG~t~~A~~FL~~~tl~Il~LGlvAF~~~tagGvl~aK~m 330 (399)
T TIGR03136 281 YGSTLFLGLVLGVLCEASTLLDPRVSILLVLGITALLISGIGGVLGGWFV 330 (399)
T ss_pred HHHHHHHHHHhhhhccHHhhCChHHHHHHHHHHHHHHHhhhHHHHHHHHH
No 114
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.81 E-value=2.5e+02 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 009951 298 LVLSIYLTVTSILSWSFVPRFLKLMIQL 325 (521)
Q Consensus 298 ~~l~~fllv~~vv~~~~~~~llr~l~~~ 325 (521)
+.++.|+++.+++.+++.+|+.+.+..+
T Consensus 27 ~~~inFliL~~lL~k~l~~Pi~~~l~~R 54 (156)
T CHL00118 27 LMALQFLLLMVLLNIILYKPLLKVLDER 54 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777888889999998888754
No 115
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=20.61 E-value=1e+03 Score=25.20 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHhcchhhHHh----HhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHhhHHHHHHH
Q 009951 381 PIRNLFAALFLSSIGMLIHVHF----LWNHVDILLASVILVIIVKTAVGTIVTK-LFGYSMRTSFLVGVSLAQIGEFAFV 455 (521)
Q Consensus 381 ~i~~~f~piFF~~iGl~ld~~~----l~~~~~~il~lvll~vl~K~l~~~l~~~-~~g~~~r~s~~lgl~L~~~GefslV 455 (521)
++..++.......+|++=-..- +......++..+.+.++. .+.++...| +.+.++.++..++---...+...++
T Consensus 24 ~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~li-Pl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~ 102 (327)
T PF05982_consen 24 AIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILI-PLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFA 102 (327)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHH
Confidence 4556666666788888754332 222111122223333333 334444444 5789999999988888888888888
Q ss_pred HHHHHhhCCCChHHHHHHHH
Q 009951 456 LLSRASNLHLVEGKMYLLLL 475 (521)
Q Consensus 456 las~a~~~giIs~e~~~lll 475 (521)
.+.--.+..-++-|-|...+
T Consensus 103 ~a~~~L~~~gi~yeg~m~a~ 122 (327)
T PF05982_consen 103 AALAFLESQGISYEGYMVAL 122 (327)
T ss_pred HHHHHHHHCCCCccccHHHH
Confidence 88766665556666665543
Done!