Query 009951
Match_columns 521
No_of_seqs 182 out of 1321
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:35:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.7 2.4E-16 8.2E-21 164.9 13.3 292 167-492 61-383 (388)
2 3zux_A Transporter, ASBTNM; tr 92.6 9.7 0.00033 38.4 26.7 72 418-492 238-310 (332)
3 3zux_A Transporter, ASBTNM; tr 81.9 27 0.00091 35.1 14.8 110 379-492 41-155 (332)
4 2l0e_A Sodium/hydrogen exchang 66.3 1.1 3.7E-05 30.2 -0.3 29 222-250 2-30 (33)
5 2kv5_A FST, putative uncharact 28.2 45 0.0015 22.2 2.7 26 479-509 4-29 (33)
6 1b9u_A Protein (ATP synthase); 16.3 2E+02 0.0069 18.5 4.2 23 300-322 11-33 (34)
7 3u85_B Histone-lysine N-methyl 12.8 69 0.0024 18.9 0.9 9 2-10 7-15 (21)
8 1zcd_A Na(+)/H(+) antiporter 1 8.2 3.2E+02 0.011 28.0 4.6 22 382-403 63-84 (388)
9 2k3c_A TMIX peptide; membrane 7.1 8.7 0.0003 25.6 -5.2 25 344-368 6-30 (33)
10 2l6o_A Uncharacterized protein 5.9 2.4E+02 0.0083 23.9 1.9 20 137-156 46-65 (114)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.67 E-value=2.4e-16 Score=164.86 Aligned_cols=292 Identities=17% Similarity=0.102 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------hhcCChHHHHHHHHHHhhCcCCccchHHHHHHhcCchHHHHHHHHHhhcccH
Q 009951 167 RLISDLVVVIVSAAIGGIIF--------SCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSST 238 (521)
Q Consensus 167 ~li~~l~lil~~a~i~g~l~--------~rlglP~ivGyIlaGilLGPsgLglI~~~~ql~G~~~~~al~iG~~ls~TSt 238 (521)
+.+.|-.+.++.-...=++= ++.+.-........|=++-|..+.. .++.+..++.....+...|+.
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~------~~~~~~~~~~~gw~ip~ATdI 134 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL------AFNYADPITREGWAIPAATDI 134 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG------GGCCSSTTHHHHTSSSSCCCH
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH------HHhcCChhhhhhhHHHHHHHH
Confidence 46777666665533333331 2233311223333444455654432 245555566777788899999
Q ss_pred HHHHHHHHhcccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 009951 239 AVVVKFLVEQNSNN-ALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPR 317 (521)
Q Consensus 239 avv~~iL~e~~~l~-s~~g~iiL~~avl~Dv~~~il~all~~l~~~~~~~~~~~sl~~~l~~l~~fllv~~vv~~~~~~~ 317 (521)
+..+.++...+... +..++.+++.+++||+.+++++++.. +.+ . ++..+. . .++++++. +
T Consensus 135 Afal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfy---t~~-~--~~~~l~---~-~~~~~~~~---------~ 195 (388)
T 1zcd_A 135 AFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFY---TND-L--SMASLG---V-AAVAIAVL---------A 195 (388)
T ss_dssp HHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHS---CCC-C--CHHHHH---H-HHHHHHHH---------H
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHH---cCC-c--cHHHHH---H-HHHHHHHH---------H
Confidence 99999999976544 44568999999999999999988763 121 1 222221 1 11111111 1
Q ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC-----CchhhHHHhhhcHH-HHHHHHH-
Q 009951 318 FLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-----DFAKHTLDQVEPIR-NLFAALF- 390 (521)
Q Consensus 318 llr~l~~~~~~~~El~ll~~lal~~~~~~iae~lGls~~LGAFlAGl~ls~~-----~~~~~l~~~le~i~-~~f~piF- 390 (521)
+.++. ..++......+ ++...+.+++.|+|+.+|+|++|++++.. ...++++++++|+. .++.|+|
T Consensus 196 ~l~r~-----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFa 268 (388)
T 1zcd_A 196 VLNLC-----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFA 268 (388)
T ss_dssp HHHHT-----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHh-----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11211 12222222222 23334556999999999999999999985 34578999999997 5889999
Q ss_pred HHHhcchhhHH---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHHHHHHHHH
Q 009951 391 LSSIGMLIHVH---FLWNHVDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIGEFAFVLL 457 (521)
Q Consensus 391 F~~iGl~ld~~---~l~~~~~~il~lvll~vl~K~l~~~l~~~~~----------g~~~r~s~~lgl~L~~~GefslVla 457 (521)
|++.|.++|.. .+.+ +. .+.+++..+++|+++++..++.. |.+|++..-+|+.++.+++.+++++
T Consensus 269 FanaGv~l~~~~~~~l~~-~~-~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia 346 (388)
T 1zcd_A 269 FANAGVSLQGVTLDGLTS-IL-PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIA 346 (388)
T ss_dssp HHHCCCCCSSSCCCTHHH-HS-STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHH
T ss_pred HHhcCeeecccchhhccC-hH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHH
Confidence 99999999974 2322 11 23444556899999966666655 8999999999998888999999999
Q ss_pred HHHhhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 458 SRASNLHL--VEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 458 s~a~~~gi--Is~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
+.|++.+. +.++.+..++..+++|.+++|++.|+.
T Consensus 347 ~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~ 383 (388)
T 1zcd_A 347 SLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVR 383 (388)
T ss_dssp HHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTT
T ss_pred HHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998876 356778888899999999999877654
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=92.57 E-value=9.7 Score=38.43 Aligned_cols=72 Identities=11% Similarity=-0.047 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHH-HHhhHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009951 418 IIVKTAVGTIVTKLFGYSMRTSFLVGV-SLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 418 vl~K~l~~~l~~~~~g~~~r~s~~lgl-~L~~~GefslVlas~a~~~giIs~e~~~lll~~~vlS~i~~Pll~~~~ 492 (521)
...-+..++...|.+|.+.+++..+++ .=.|.++.++.++...+.. +++.........+.-.+.+.++.+++
T Consensus 238 ~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~~ 310 (332)
T 3zux_A 238 NGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATYW 310 (332)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788889999988888777 3445567777777665421 22222222233333444555555543
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=81.90 E-value=27 Score=35.13 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=65.3
Q ss_pred hhcHHHHHHHHHHHHhcchhhHHhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH-HHHHHHhhHHHHHH
Q 009951 379 VEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSF-LVGVSLAQIGEFAF 454 (521)
Q Consensus 379 le~i~~~f~piFF~~iGl~ld~~~l~~---~~~~il~lvll~vl~K~l~~~l~~~~~g~~~r~s~-~lgl~L~~~Gefsl 454 (521)
+++.....+.+-+...|+++++..+.. ++.......++-.+..++.++...+.++.+..... .+=++.+|-+..+.
T Consensus 41 ~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~ 120 (332)
T 3zux_A 41 AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASN 120 (332)
T ss_dssp GGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHH
Confidence 445556677788889999999988874 34444444555666777788888887766643222 11222445555566
Q ss_pred HHHHHHhhCCCChHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 009951 455 VLLSRASNLHLVEGKMY-LLLLGTTALSLVTTPLLFKLI 492 (521)
Q Consensus 455 Vlas~a~~~giIs~e~~-~lll~~~vlS~i~~Pll~~~~ 492 (521)
+++..+ |- |.+.. ......++++.++.|++..++
T Consensus 121 v~t~~a---~G-d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 121 VMTYLA---RG-NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp HHHHHT---TC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---CC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 22 23322 223355566777778776654
No 4
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=66.32 E-value=1.1 Score=30.15 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhhcccHHHHHHHHHhccc
Q 009951 222 KLSEGVFVGSFLSMSSTAVVVKFLVEQNS 250 (521)
Q Consensus 222 ~~~~al~iG~~ls~TStavv~~iL~e~~~ 250 (521)
++..++++|+++|+|++..+..++++.+.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 35567889999999999999999999764
No 5
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=28.21 E-value=45 Score=22.25 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhccCCCCC
Q 009951 479 ALSLVTTPLLFKLIPNVMNLGILLHWFPSEG 509 (521)
Q Consensus 479 vlS~i~~Pll~~~~~~i~~~~~~~~~~~~~~ 509 (521)
+++.+++|++....-. .+.||...++
T Consensus 4 i~~~IIaPivVGvvl~-----L~d~WLn~r~ 29 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLE-----MISRVLDEED 29 (33)
T ss_dssp THHHHHHHHHHHHHHH-----HHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHcccc
Confidence 4577888888776533 5788988775
No 6
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=16.28 E-value=2e+02 Score=18.48 Aligned_cols=23 Identities=4% Similarity=0.037 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 009951 300 LSIYLTVTSILSWSFVPRFLKLM 322 (521)
Q Consensus 300 l~~fllv~~vv~~~~~~~llr~l 322 (521)
++.|+++.+++.+++.|++.+.+
T Consensus 11 ~i~Flil~~~l~kf~~~Pi~~~l 33 (34)
T 1b9u_A 11 AIAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666777788888876654
No 7
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=12.78 E-value=69 Score=18.91 Aligned_cols=9 Identities=67% Similarity=1.221 Sum_probs=5.9
Q ss_pred CCCCCCCCC
Q 009951 2 ARRGGSGGG 10 (521)
Q Consensus 2 ~~~~~~~~~ 10 (521)
||.|||+++
T Consensus 7 arpg~s~~s 15 (21)
T 3u85_B 7 ARPGTTGGG 15 (26)
T ss_pred cCCCcccCC
Confidence 677776554
No 8
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=8.18 E-value=3.2e+02 Score=28.05 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcchhhHHhH
Q 009951 382 IRNLFAALFLSSIGMLIHVHFL 403 (521)
Q Consensus 382 i~~~f~piFF~~iGl~ld~~~l 403 (521)
++|-+..+||..+|+.++.+.+
T Consensus 63 indglm~lFff~vGLEik~e~l 84 (388)
T 1zcd_A 63 INDALMAVFFLLVGLEVKRELM 84 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHHHHHhhHHHh
Confidence 4689999999999999998766
No 9
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=7.07 E-value=8.7 Score=25.59 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=20.6
Q ss_pred HHHHHHHhCchHHHHHHHHHHHhcC
Q 009951 344 SAWCSDKLGLSLELGSFMAGVMIST 368 (521)
Q Consensus 344 ~~~iae~lGls~~LGAFlAGl~ls~ 368 (521)
...++|.+++|++++.+.+|+.+++
T Consensus 6 ~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 6 AYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp TTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHhCcChHHHHHHHHHHHhh
Confidence 3456888999999999999988764
No 10
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=5.88 E-value=2.4e+02 Score=23.93 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred cccceeeeccCCeeeeccCC
Q 009951 137 DDEMTLIDKKDNVFVMSNKK 156 (521)
Q Consensus 137 ~~~~~lid~~~n~~~~s~~~ 156 (521)
.+-++|||++.+.|.+....
T Consensus 46 ~~~d~LIDs~G~~y~L~~~~ 65 (114)
T 2l6o_A 46 QYGDKLVDSNFHCFVLEEDA 65 (114)
T ss_dssp CTTCCEEETTCEEEEECTTS
T ss_pred CCCCEEEeCCCCEEEecCCC
Done!