Query 009951
Match_columns 521
No_of_seqs 182 out of 1321
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 16:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009951.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009951hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 17.1 1.7E+02 0.012 20.8 7.2 19 306-324 14-32 (86)
2 d2dloa2 g.39.1.3 (A:43-75) Thy 12.5 33 0.0024 21.4 0.9 18 136-153 9-26 (33)
3 d1ecib_ a.33.1.1 (B:) Ectatomi 7.5 79 0.0057 18.9 1.3 17 54-70 17-33 (34)
4 d1wxma1 d.15.1.5 (A:8-80) A-Ra 6.9 83 0.0061 22.8 1.5 16 56-72 19-34 (73)
5 d2yvxa3 f.57.1.1 (A:276-448) M 5.4 7E+02 0.051 20.1 10.5 30 232-261 54-83 (173)
6 d1yqfa1 d.25.1.1 (A:14-195) Hy 4.5 3.6E+02 0.026 22.0 4.5 45 59-105 4-49 (182)
7 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 4.3 2E+02 0.014 20.8 2.1 17 55-72 19-35 (77)
8 d1cola_ f.1.1.1 (A:) Colicin A 4.1 4.9E+02 0.036 21.9 5.0 32 172-203 144-179 (197)
9 d1v7wa2 b.30.5.3 (A:1-270) Chi 3.6 2.2E+02 0.016 25.1 2.2 18 143-160 6-23 (270)
10 d1ifqa_ d.110.4.1 (A:) Sec22b 2.3 2.7E+02 0.02 21.6 1.2 33 38-71 89-121 (127)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=17.12 E-value=1.7e+02 Score=20.82 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=9.2
Q ss_pred HHHHHHhhHHHHHHHHHHh
Q 009951 306 VTSILSWSFVPRFLKLMIQ 324 (521)
Q Consensus 306 v~~vv~~~~~~~llr~l~~ 324 (521)
+.+.+.|++.+.+.|.+++
T Consensus 14 i~~~i~~~i~~~~~~~~~~ 32 (86)
T d2vv5a3 14 VGLIIARMISNAVNRLMIS 32 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444555555444444443
No 2
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.52 E-value=33 Score=21.35 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=15.5
Q ss_pred CcccceeeeccCCeeeec
Q 009951 136 SDDEMTLIDKKDNVFVMS 153 (521)
Q Consensus 136 ~~~~~~lid~~~n~~~~s 153 (521)
-+++|.-+|..|+.|++.
T Consensus 9 LDGvPFtvD~~n~i~Cv~ 26 (33)
T d2dloa2 9 LDGIPFTVDATSQIHCIE 26 (33)
T ss_dssp CTTSCEECCTTCCCEEHH
T ss_pred cCCCcEEEcCCCCEeehh
Confidence 368899999999999974
No 3
>d1ecib_ a.33.1.1 (B:) Ectatomin subunit B, EB {Ant (Ectatomma tuberculatum), venom [TaxId: 39300]}
Probab=7.49 E-value=79 Score=18.91 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=12.2
Q ss_pred CCCCCCcHHHHHHHHHh
Q 009951 54 EDSGDGSIAKMFDRVLE 70 (521)
Q Consensus 54 ~~~~~~~~~~~~~~~~~ 70 (521)
.+.-|||||.|+.+--+
T Consensus 17 akkcegsiatmikkkcd 33 (34)
T d1ecib_ 17 AKKCEGSIATMIKKKCD 33 (34)
T ss_dssp HTTBSTTHHHHHHHHSC
T ss_pred HHHccchHHHHHHHhcC
Confidence 34568899999976543
No 4
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.93 E-value=83 Score=22.77 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHHhcc
Q 009951 56 SGDGSIAKMFDRVLEKE 72 (521)
Q Consensus 56 ~~~~~~~~~~~~~~~~~ 72 (521)
+++ |+.+++.+++||.
T Consensus 19 pG~-tir~~L~k~l~kR 34 (73)
T d1wxma1 19 DGM-SVYDSLDKALKVR 34 (73)
T ss_dssp SSC-BSHHHHHHHHHTT
T ss_pred CCC-CHHHHHHHHHHHc
Confidence 444 9999999999984
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=5.44 E-value=7e+02 Score=20.14 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=21.2
Q ss_pred HhhcccHHHHHHHHHhcccCCcchHHHHHH
Q 009951 232 FLSMSSTAVVVKFLVEQNSNNALHGQVTIG 261 (521)
Q Consensus 232 ~ls~TStavv~~iL~e~~~l~s~~g~iiL~ 261 (521)
-...-|.++++|-+...+...++..+.+..
T Consensus 54 N~G~Qs~ti~iR~La~g~i~~~~~~~~l~k 83 (173)
T d2yvxa3 54 NTGNQSATLIIRALATRDLDLRDWRRVFLK 83 (173)
T ss_dssp HHHHHHHHHHHHHHHTTCSCSSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccchhHHHHHHH
Confidence 344556778889888877777777777643
No 6
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}
Probab=4.50 E-value=3.6e+02 Score=22.03 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHhccCCCCcCCCC-CCCCCcchhhhhccceeeeEEEee
Q 009951 59 GSIAKMFDRVLEKEFPDNEQSSG-SDGSSFNSSVADQQAVLETVAKIT 105 (521)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~e~~~~~~ 105 (521)
+.+++.+.+=++.|-...++++. +....| ++.+..+.-|-++|-+
T Consensus 4 ~~L~~~l~~Ei~~E~~~~~~~~~p~~~~gf--~i~d~~g~~~v~L~r~ 49 (182)
T d1yqfa1 4 AALADATRRELEEEMGRSDKPEQPTPPAGW--QVVRKPGTCTFDLTKS 49 (182)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCCCCCCTTC--EEEECTTSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCCC--EEEEcCCceEEEEEEe
Confidence 46788888888888766665553 333456 5555655545555443
No 7
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.26 E-value=2e+02 Score=20.79 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=13.8
Q ss_pred CCCCCcHHHHHHHHHhcc
Q 009951 55 DSGDGSIAKMFDRVLEKE 72 (521)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~ 72 (521)
.+++ |+.+++.+++||.
T Consensus 19 rpG~-tird~L~k~l~kR 35 (77)
T d1c1yb_ 19 RNGM-SLHDCLMKALKVR 35 (77)
T ss_dssp CTTC-BHHHHHHHHHHTT
T ss_pred cCCC-CHHHHHHHHHHHc
Confidence 3444 9999999999984
No 8
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=4.13 E-value=4.9e+02 Score=21.92 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhcCChH----HHHHHHHHHh
Q 009951 172 LVVVIVSAAIGGIIFSCLGQPV----IVGYLLAGSI 203 (521)
Q Consensus 172 l~lil~~a~i~g~l~~rlglP~----ivGyIlaGil 203 (521)
.+.+.+.+..+|.+.-.+++|. ++|+++.|++
T Consensus 144 ~va~~~fs~~~~~~~~~~g~~~~~iGI~g~li~~~v 179 (197)
T d1cola_ 144 SVALGIFSATLGAYALSLGVPAIAVGIAGILLAAVV 179 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 4445556667777777888883 5677766665
No 9
>d1v7wa2 b.30.5.3 (A:1-270) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}
Probab=3.57 E-value=2.2e+02 Score=25.10 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=13.2
Q ss_pred eeccCCeeeeccCCCCCc
Q 009951 143 IDKKDNVFVMSNKKSKYP 160 (521)
Q Consensus 143 id~~~n~~~~s~~~~~~~ 160 (521)
.|.++++||+++|..+.|
T Consensus 6 F~~~~~eyvi~~~~tP~P 23 (270)
T d1v7wa2 6 FDNDNREYVITRPDVPAP 23 (270)
T ss_dssp EETTTTEEEESCSCCSSC
T ss_pred cCCCCCEEEEcCCCCCCc
Confidence 467788999988875444
No 10
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.31 E-value=2.7e+02 Score=21.60 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHhhhhhccccCCCcCCCCCCcHHHHHHHHHhc
Q 009951 38 KETRQRFYGNLVNTTEEDSGDGSIAKMFDRVLEK 71 (521)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (521)
+|.+++|...-.+.-..+.++=++-+ ||+.++|
T Consensus 89 eei~~eF~~~y~~~i~~~~rpy~Fi~-Fd~~iqk 121 (127)
T d1ifqa_ 89 EDLHSEFDEQHGKKVPTVSRPYSFIE-FDTFIQK 121 (127)
T ss_dssp HHHHHHHHHHHTTTTTTCCSTTTTGG-GHHHHHH
T ss_pred HHHHHHHHHhhhhhhhcccCCcchHH-HHHHHHH
Done!