BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009954
(521 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 584 bits (1505), Expect = e-166, Method: Compositional matrix adjust.
Identities = 284/410 (69%), Positives = 328/410 (80%), Gaps = 15/410 (3%)
Query: 112 SGFDMAPPAAAMLPG-AAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
SGFDMAPP +AMLPG A GQ+PG +P M NM P + Q GA P+MP+Q MTQQA
Sbjct: 175 SGFDMAPPTSAMLPGITAAAGQVPGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQA 234
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLP ANEQ++ATFFS VM+AIGGN+AGPGDAVVNVYIN+EKKFAFVEMR
Sbjct: 235 TRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMR 294
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDGIIFEG +VRRP+DYNP+LAA LGP QP+PNLNLAAVGL+ G+ GG
Sbjct: 295 SVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGG 354
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 355 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 414
Query: 351 IACAALNGLKMGDKTLTVRRAT-ASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 409
IACAALNG+KMGDKTLTVRRA + Q K EQES+L AQQ IA+Q++ LQ + + T
Sbjct: 415 IACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQPATLAT--- 471
Query: 410 GMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGG 469
KVL LTE I+AD L DDE+Y++ILEDMR ECGK+G+LVNVVIPRP NG
Sbjct: 472 ----------KVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGE 521
Query: 470 ETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 519
TPGVGKVFLEY D + A+ +L+GRKFGGN V A +YPE+K++ DY
Sbjct: 522 PTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDY 571
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 584 bits (1505), Expect = e-166, Method: Compositional matrix adjust.
Identities = 284/412 (68%), Positives = 325/412 (78%), Gaps = 15/412 (3%)
Query: 112 SGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQA 170
SGFDMAPP A+LPGA GQ+PG A+P + NM P ++Q GA P+MPVQ MTQQA
Sbjct: 157 SGFDMAPPTTALLPGATDAAGQVPGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQA 216
Query: 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 230
TRHARRVYVGGLPP ANEQ++ATFFS VM AIGGN+AGPGDAVVNVYINHEKKFAFVEMR
Sbjct: 217 TRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 276
Query: 231 TVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGG 290
+VEEASNAMALDG+IFEG V+VRRP+DYNP+LAA LGP QPSPNLNLAAVG G+ GG
Sbjct: 277 SVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGG 336
Query: 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTD 350
EGPDR+FVGGLPYYFTE+QI+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD +VTD
Sbjct: 337 LEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 396
Query: 351 IACAALNGLKMGDKTLTVRRAT-ASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG 409
IACAALNG+KMGDKTLTVRRA + Q EQES+L AQQ IA+Q+ LQ + T
Sbjct: 397 IACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPGALAT--- 453
Query: 410 GMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGG 469
KVLCLTE +T D L DD++Y++ILEDMR EC K+G LVNVVIPRP+ NG
Sbjct: 454 ----------KVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGV 503
Query: 470 ETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 521
TPG+GKVFLEY D G + A+ L+GRKFGGN V A +YPE+K+ DY A
Sbjct: 504 PTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYEA 555
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/411 (68%), Positives = 322/411 (78%), Gaps = 17/411 (4%)
Query: 113 GFDMAPPAAAMLPGAAVPGQLPGVPSA--VPEMAQNMLPF-GATQLGAFPLMPVQVMTQQ 169
GFDMAPP A GQ+P VP+ +P M NM P QLGA P++PVQ MTQQ
Sbjct: 190 GFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQ 249
Query: 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEM 229
ATRHARRVYVGGLPP ANEQ+++TFFSQVM+AIGGN+AGPGDAVVNVYINHEKKFAFVEM
Sbjct: 250 ATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEM 309
Query: 230 RTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIG 289
R+VEEASNAMALDGII EGV V+VRRPTDYNP+LAA LGP QP+PNLNL AVGL+SG+ G
Sbjct: 310 RSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTG 369
Query: 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVT 349
G EGPDR+FVGGLPYYFTE QI+ELLESFG L GF+LVKDR+TGNSKGY FCVYQDP+VT
Sbjct: 370 GLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 350 DIACAALNGLKMGDKTLTVRRATASG-QSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 408
DIACAALNG+KMGDKTLTVRRA Q K EQE +L AQQ IA+Q++ Q G
Sbjct: 430 DIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG----- 484
Query: 409 GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNG 468
T K++CLT+ +TAD L DDEEY EI+EDMR+E GK+G LVNVVIPRP+ +
Sbjct: 485 --------TPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDH 536
Query: 469 GETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 519
TPGVGKVFLEY D G + A++ ++GRKFGGN V A YYPEDKY DY
Sbjct: 537 DPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 283/424 (66%), Positives = 325/424 (76%), Gaps = 20/424 (4%)
Query: 102 SRSPSKSKRRSGFDMAPPAAAMLP---GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAF 158
SRS SKSKR SGFD+ P A ++LP P QLPG S++P M NMLPF Q+
Sbjct: 134 SRSHSKSKRVSGFDLGPTAQSVLPQFPTIPTPSQLPG--SSIPGMFPNMLPFADGQINPL 191
Query: 159 PLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI 218
+ P Q MTQQATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYI
Sbjct: 192 VMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYI 250
Query: 219 NHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
NH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPS NLNL
Sbjct: 251 NHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNL 310
Query: 279 AAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
AAVGL G+ GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY
Sbjct: 311 AAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGY 370
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT-ASGQSKTEQESILAQAQQHIAIQKM 397
FCVYQD VTDIACAALNG+KMGDKTLTVRRA S Q + EQE+IL QAQQ + +QK+
Sbjct: 371 AFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGSAQPRPEQENILLQAQQQVQLQKL 430
Query: 398 ALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLV 457
Q + T KV+CLT+ +TAD L DDEEYE+I+EDMR E GKYG LV
Sbjct: 431 VYQVGALPT-------------KVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLV 477
Query: 458 NVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNK 517
VVIPRP +G GVGKVFLEY D G AK A+ GRKFGGN V A +YPE+K+ ++
Sbjct: 478 KVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADE 537
Query: 518 DYSA 521
DY A
Sbjct: 538 DYDA 541
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/418 (66%), Positives = 318/418 (76%), Gaps = 18/418 (4%)
Query: 109 KRRSGFDMAPPAAAMLPGAA-VPGQLPGVPSAVPE--MAQNMLPFGATQ-LGAFPLMPVQ 164
+R SGFDMAPPA+AML A V GQ+P P +P M NM P Q G +MP+Q
Sbjct: 169 QRVSGFDMAPPASAMLAAGAAVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQ 228
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
MTQQATRHARRVYVGGL P ANEQ++ATFFSQVM A+GGN+AGPGDAVVNVYINHEKKF
Sbjct: 229 AMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKF 288
Query: 225 AFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLA 284
AFVEMR+VEEASNAM+LDGIIFEG V+VRRP+DYNP+LAA LGP QPSP+LNLAAVGL
Sbjct: 289 AFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLT 348
Query: 285 SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQ 344
GA GG EGPDR+FVGGLPYYFTE+Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQ
Sbjct: 349 PGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQ 408
Query: 345 DPAVTDIACAALNGLKMGDKTLTVRRAT-ASGQSKTEQESILAQAQQHIAIQKMALQTSG 403
D +VTDIACAALNG+KMGDKTLTVRRA + K EQE++L AQQ IA Q++ LQ
Sbjct: 409 DLSVTDIACAALNGIKMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGA 468
Query: 404 MNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPR 463
+ T V+CLT+ +T D L DDEEY +I+EDMR+E GK+G L NVVIPR
Sbjct: 469 VATT-------------VVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPR 515
Query: 464 PDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 521
P NG G+GKVFL+Y D G A+ ++GRKFGGN V A YYPEDK+ DY A
Sbjct: 516 PSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDYGA 573
Score = 35.8 bits (81), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 35 RHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHR----HRSRSHSSD 90
R H S DR R+K DRE + R R RD + KER HR R H S
Sbjct: 42 RDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSS 101
Query: 91 RFRNRS 96
R R+ S
Sbjct: 102 RHRDHS 107
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 276/414 (66%), Positives = 318/414 (76%), Gaps = 20/414 (4%)
Query: 112 SGFDMAPPAAAMLP---GAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQ 168
SGFDMAPPA A++P P Q PG +A+P M NMLP G Q + P Q MTQ
Sbjct: 151 SGFDMAPPAQAVVPQFPAIPTPSQFPG--TAIPGMFPNMLPMGVGQFNPLVIQP-QAMTQ 207
Query: 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 228
QATRHARRVYVGGLPP ANEQ++A +F+QVM AIGGN+AGPGDAV+NVYINH+KKFAFVE
Sbjct: 208 QATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 267
Query: 229 MRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAI 288
MR+VEEASNAMALDGI+FEG V+VRRPTDYNP+LAAALGP QPSPNLNLAAVGL G+
Sbjct: 268 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSA 327
Query: 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348
GG EGPDR+FVGGLPYYFTE Q++ELLESFG L GFDLVKDR+TGNSKGY FCVYQD V
Sbjct: 328 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNV 387
Query: 349 TDIACAALNGLKMGDKTLTVRRAT-ASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTL 407
TDIACAALNG+KMGDKTLTVRRA + Q + EQESIL QAQQ + +QK+ Q + T
Sbjct: 388 TDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGALPT- 446
Query: 408 GGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQN 467
KV+CLT+ ++AD L DDEEYE+I+EDMR E GKYG L+ VVIPRPD +
Sbjct: 447 ------------KVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPS 494
Query: 468 GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 521
G GVGKVFLEY D G AK A+ GRKFGGN V A +YPE+K+ + +Y A
Sbjct: 495 GLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAEYDA 548
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/389 (63%), Positives = 288/389 (74%), Gaps = 13/389 (3%)
Query: 132 QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAI 191
Q+P V A+ M NM T + P Q MTQQATRHARRVYVGGLPP ANE +
Sbjct: 196 QVPVVAPAISGMLPNMFNLTQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTV 254
Query: 192 ATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251
A +F+QVM A+GGN+AGPGDAV+NVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V
Sbjct: 255 AVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPV 314
Query: 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQI 311
+VRRPTDYNP+LAAALGP QP+PNLNLAAVGL G+ GG EGPDR+FVGGLPYYFTE Q+
Sbjct: 315 KVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQV 374
Query: 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
+ELLESFG L GFDLVKDR+TGNSKGY FCVYQD VTDIACAALNG+KMGDKTLTVRRA
Sbjct: 375 RELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRA 434
Query: 372 T-ASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITA 430
+ Q + EQES+L QQ +QK+ Q G G KV+CLT+ ++
Sbjct: 435 NQGASQPRPEQESMLLHVQQQAQMQKLMFQVGG-----------GALPTKVVCLTQVVSP 483
Query: 431 DALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATA 490
D L DDEEYE+I++DMREE +YG LV VVIPRPD +G GVG+VFLE+ D A
Sbjct: 484 DELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKA 543
Query: 491 KNALSGRKFGGNTVNAFYYPEDKYFNKDY 519
KN + GRKF N V A +YPEDK+ Y
Sbjct: 544 KNGMHGRKFANNQVVAVFYPEDKFAEGQY 572
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 249/443 (56%), Positives = 296/443 (66%), Gaps = 28/443 (6%)
Query: 29 GERGRDRHHRDFKSGGDDRRRDKNYKYDREGIRDHDRTDRHRDYNRDKERRHRHRSRSHS 88
G R R+RHHRD + G DR R + D + D + R R
Sbjct: 131 GSRDRERHHRDHREGSRDRER---HHRDHRERSERREHRDRSDDRDYRRSCDRDAERRDR 187
Query: 89 SDRFRNRSKSLSPSRSPSKSKRRSGFDMAPPAA-AMLPGAAVPGQLPGVPSAVPEMAQNM 147
R +S SP RS S+SKR SGFD P A +L A P QLP +P+A P M NM
Sbjct: 188 DRDGHRRHRSRSPLRSESQSKRMSGFDQRPSEAIPILAPDATPSQLPELPAANPGMFPNM 247
Query: 148 LP--FGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGN 205
LP LG PL MTQQATRHARRVYVGGLPP+ANEQ +A FF+QVM AIGGN
Sbjct: 248 LPNLVNVPALGQ-PL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGN 302
Query: 206 SAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265
+ G AVVNVYINH+KKFAFVEMR+VEEASNAMALDGI+FEG V+VRRPTDYNP+ AA
Sbjct: 303 TFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAA 362
Query: 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFD 325
ALGP QP+PNLNLAAVGL GA GG EGPDR+FVGGLPYYFTE Q++ELLE+FG L GFD
Sbjct: 363 ALGPSQPNPNLNLAAVGLTPGAGGGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRGFD 422
Query: 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESIL 385
+VKD++TGNSKGY FC+Y+D VTDIACAALNG+++GD+TLTVRRA + + EQE+IL
Sbjct: 423 IVKDKETGNSKGYAFCLYKDGTVTDIACAALNGIQLGDRTLTVRRANQGAEPRPEQENIL 482
Query: 386 AQAQQHIAIQKMALQTSGMNTLGGGMSLFGETL-AKVLCLTEAITADALADDEEYEEILE 444
QAQQ ++++ + G TL KV+CLT+ ++AD L DDEEY +ILE
Sbjct: 483 LQAQQEAQMKRLVYEV-------------GRTLTTKVVCLTQVVSADDLRDDEEYNDILE 529
Query: 445 DMREECGKY---GTLVNVVIPRP 464
DM E KY T+ I RP
Sbjct: 530 DMTLEGHKYVPHSTIAESFIIRP 552
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/393 (39%), Positives = 220/393 (55%), Gaps = 46/393 (11%)
Query: 131 GQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQA 190
GQ+P S VP+ Q +P V+ TR ARR+YVG +P E+
Sbjct: 66 GQIPA--SVVPDTPQTAVP---------------VVGSTITRQARRLYVGNIPFGVTEEE 108
Query: 191 IATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250
+ FF+Q M +G A G V+ IN +K FAF+E R+++E + AMA DGI +G +
Sbjct: 109 MMEFFNQQMHLVGLAQAA-GSPVLACQINLDKNFAFLEFRSIDETTQAMAFDGINLKGQS 167
Query: 251 VRVRRPTDYNPTLAAALGPG-QPSPNLNLAAVGLASGAIGGA--EGPDRVFVGGLPYYFT 307
+++RRP DY P PG +P + A V +SG I + P ++F+GGLP Y
Sbjct: 168 LKIRRPHDYQPM------PGITDTPAIKPAVV--SSGVISTVVPDSPHKIFIGGLPNYLN 219
Query: 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367
+ Q+KELL SFG L F+LVKD TG SKGY FC Y D ++TD + A LNG+++GDK L
Sbjct: 220 DDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLI 279
Query: 368 VRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGM-NTLGGGMSLFGETLAKVLCLTE 426
V+RA+ ++ + Q + LQ G+ N + G +VLCL
Sbjct: 280 VQRASVGAKNAQNAAN---------TTQSVMLQVPGLSNVVTSGPP------TEVLCLLN 324
Query: 427 AITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVG 486
+T D L D+EEYE+ILED++EEC KYG + +V IPRP + G E PG GKVF+E+ +
Sbjct: 325 MVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIE-GVEVPGCGKVFVEFNSVLD 383
Query: 487 CATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 519
C A+ AL+GRKF V Y+ DKY +++
Sbjct: 384 CQKAQQALTGRKFSDRVVVTSYFDPDKYHRREF 416
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 259 bits (662), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 168/420 (40%), Positives = 234/420 (55%), Gaps = 26/420 (6%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 133
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN
Sbjct: 134 PTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN 192
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
+K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 193 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVY 245
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 246 VPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 303
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMAL 399
FC Y D VTD A A LNG+++GDK L V+RA+ ++ T Q + +Q L
Sbjct: 304 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGL 363
Query: 400 QTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNV 459
+S + +GG + +VLCL + + L DDEEYEEI+ED+R+EC KYG + ++
Sbjct: 364 MSSQVQ-MGGHPT-------EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSI 415
Query: 460 VIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 519
IPRP +G E PG GK+F+E+ C A L+GRKF V Y D Y +D+
Sbjct: 416 EIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 259 bits (661), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 169/420 (40%), Positives = 232/420 (55%), Gaps = 26/420 (6%)
Query: 103 RSP---SKSKRRSGFDMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFP 159
RSP K K R +D+ PP + P Q + +A A +LP A
Sbjct: 78 RSPRHEKKKKVRKYWDVPPPGFEHI----TPMQYKAMQAAGQIPATALLPTMTPDGLAVT 133
Query: 160 LMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN 219
PV V+ Q TR ARR+YVG +P E+A+ FF+ M +GG + PG+ V+ V IN
Sbjct: 134 PTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN 192
Query: 220 HEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLA 279
+K FAF+E R+V+E + AMA DGIIF+G ++++RRP DY P PG S N ++
Sbjct: 193 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPL------PGM-SENPSVY 245
Query: 280 AVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G+ S + + ++F+GGLP Y + Q+KELL SFG L F+LVKD TG SKGY
Sbjct: 246 VPGVVSTVV--PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 303
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMAL 399
FC Y D VTD A A LNG+++GDK L V+RA+ ++ T L I + L
Sbjct: 304 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNAT-----LVSLPSTINQTPVTL 358
Query: 400 QTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNV 459
Q G+ + M G +VLCL + + L DDEEYEEI+ED+R+EC KYG + ++
Sbjct: 359 QVPGLMSSQVQM---GGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSI 415
Query: 460 VIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 519
IPRP +G E PG GK+F+E+ C A L+GRKF V Y D Y +D+
Sbjct: 416 EIPRP-VDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 218/387 (56%), Gaps = 35/387 (9%)
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
G + P +NM GA G+ V V+ T +RR+YVG +P NE+A+ F
Sbjct: 136 GFENITPMEYKNMQASGAVPRGSVQ-SAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDF 194
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 254
F+Q M + + PG+ ++ IN +K FAF+E R+++E + MA DGI F G ++VR
Sbjct: 195 FNQQM-HLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 253
Query: 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314
RP DY P+ Q + ++N A + ++S + A +++F+GGLP Y TE Q+KEL
Sbjct: 254 RPRDYQPS--------QNTFDMN-ARMPVSSIVVDSA---NKIFIGGLPNYLTEDQVKEL 301
Query: 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
L SFG L F L D GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+
Sbjct: 302 LCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACAN 360
Query: 375 GQSKTEQESILAQAQQHIAIQKMALQTSGMN-TLGGGMSLFGETLAKVLCLTEAITADAL 433
Q + + + A +G++ + G G + ++LCL +T D L
Sbjct: 361 ------------QTRHNTHLPNSASAIAGIDLSQGAGRA------TEILCLMNMVTEDEL 402
Query: 434 ADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA 493
DE+YEEILED+REEC KYG + ++ IPRP + PGVGKVF+E+ C A+ A
Sbjct: 403 RSDEDYEEILEDVREECSKYGIVRSLEIPRP-YDDHPVPGVGKVFVEFATTSDCQRAQAA 461
Query: 494 LSGRKFGGNTVNAFYYPEDKYFNKDYS 520
L+GRKF TV YY DKY N+ ++
Sbjct: 462 LTGRKFANRTVVTSYYDVDKYHNRQFN 488
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 211/385 (54%), Gaps = 33/385 (8%)
Query: 135 GVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATF 194
G + P +NM G G+ V V+ T +RR+YVG +P NE+A+ F
Sbjct: 145 GFETTTPMEYKNMQAAGQVPRGSVQ-SAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDF 203
Query: 195 FSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVR 254
F+Q M + G + PG+ ++ IN +K FAF+E R+++E + MA DGI F G ++VR
Sbjct: 204 FNQQM-HLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVR 262
Query: 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKEL 314
RP DY P+ Q + ++N + + +++ + A +++F+GGLP Y TE Q+KEL
Sbjct: 263 RPRDYQPS--------QNTFDMN-SRMPVSTIVVDSA---NKIFIGGLPNYLTEDQVKEL 310
Query: 315 LESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374
L SFG L F L D GNSKGY F Y DP +TD A A LNG+++GDK L V+ A A+
Sbjct: 311 LCSFGPLKAFSLNVD-SQGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACAN 369
Query: 375 GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALA 434
Q L S G +S ++LCL +T D L
Sbjct: 370 QQR-----------------HNTNLPNSASAIAGIDLSQGAGRATEILCLMNMVTEDELK 412
Query: 435 DDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL 494
D+EYEEILED+R+EC KYG + ++ IPRP ++ PGVGKVF+E+ C A+ AL
Sbjct: 413 ADDEYEEILEDVRDECSKYGIVRSLEIPRPYED-HPVPGVGKVFVEFASTSDCQRAQAAL 471
Query: 495 SGRKFGGNTVNAFYYPEDKYFNKDY 519
+GRKF TV YY DKY N+ +
Sbjct: 472 TGRKFANRTVVTSYYDVDKYHNRQF 496
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 110/413 (26%), Positives = 188/413 (45%), Gaps = 37/413 (8%)
Query: 109 KRRSGFDMAPPAAAMLPG--AAVPG--QLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQ 164
++RS +D+ PP ++ A + G LPG P A + +L F + G+ + P
Sbjct: 130 RKRSLWDIKPPGYELVTADQAKMSGVFPLPGAPRAAVTDPEKLLEFARSAEGSI-IAPPP 188
Query: 165 VMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF 224
+ A+R ARR+ V G+P E A +F + + + +V + E+ F
Sbjct: 189 PLQPGASRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPE-TKHFSSVNVCKEENF 247
Query: 225 AFVEMRTVEEASNAMALDGIIFEG-VAVRVRRPTDYNPTLAAALGPGQPSPNLNLA-AVG 282
A +E+ T E+A+ L + V ++ +R +Y + P Q +P ++ +
Sbjct: 248 AILEVATPEDATFLWGLQSESYSNDVFLKFQRIQNY-------IVP-QITPEVSQKRSDD 299
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
A + + D++++ LP E Q+ ELL+ FG L F L+K+ G+SKG+ FC
Sbjct: 300 YAKNDV--LDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCE 357
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTS 402
+++P+ ++A + L+G L + A L QA M +++
Sbjct: 358 FKNPSDAEVAISGLDGKDTYGNKLHAQFACVG----------LNQA--------MIDKSN 399
Query: 403 GMNTLGGGMSLFGETL-AKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVI 461
GM L +++ +VL L IT D + D +EYE+I E ++ + YG L+++ I
Sbjct: 400 GMAILTELAKASSQSIPTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKI 459
Query: 462 PRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514
PR G GKVF+ Y D A + G KF T+ +Y ED Y
Sbjct: 460 PRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKGCKFNDRTIVIAFYGEDCY 512
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 132/338 (39%), Gaps = 67/338 (19%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASGQSK----------------TEQ 381
+ D A LNG ++ + + V R AS S T +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGR 356
Query: 382 ESILAQAQQHIAIQ-----KMALQTSGMNTLGGGMSL-----------FGETLAKVLCL- 424
++A+ + +Q + ALQ SG G L A V L
Sbjct: 357 LQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLA 416
Query: 425 TEAITADALADDEEYE------EILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVF 478
T+ + + + E EI +D+ EEC K+G ++++ + D+N + G V+
Sbjct: 417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV---DKNSAQ----GNVY 469
Query: 479 LEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 516
++ A NAL GR F G + A Y P Y N
Sbjct: 470 VKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 507
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 135/344 (39%), Gaps = 73/344 (21%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASGQSK----------------TEQ 381
+ D A LNG ++ + + V R AS S T +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGR 356
Query: 382 ESILAQAQQHIAIQ-----KMALQTSGMNTLG--GGMSLFGETLAKVLCLTE-------- 426
++A+ + +Q + ALQ SG G S + ++ TE
Sbjct: 357 LQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAA 416
Query: 427 -----AITADALAD------DEEY---EEILEDMREECGKYGTLVNVVIPRPDQNGGETP 472
A L++ +EE EI +D+ EEC K+G ++++ + D+N +
Sbjct: 417 SVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV---DKNSAQ-- 471
Query: 473 GVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 516
G V+++ A NAL GR F G + A Y P Y N
Sbjct: 472 --GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 513
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 135/344 (39%), Gaps = 73/344 (21%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE V A+ L G GV + V Q S A
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV-----------------QASQAEKNRAA 236
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G+ GP R++VG L + TE ++ + E FG + L+ D +TG SKGYGF
Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTV----RRATASGQSK----------------TEQ 381
+ D A LNG ++ + + V R AS S T +
Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGR 356
Query: 382 ESILAQAQQHIAIQ-----KMALQTSGMNTLG--GGMSLFGETLAKVLCLTE-------- 426
++A+ + +Q + ALQ SG G S + ++ TE
Sbjct: 357 LQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAA 416
Query: 427 -----AITADALAD------DEEY---EEILEDMREECGKYGTLVNVVIPRPDQNGGETP 472
A L++ +EE EI +D+ EEC K+G ++++ + D+N +
Sbjct: 417 SVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV---DKNSAQ-- 471
Query: 473 GVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 516
G V+++ A NAL GR F G + A Y P Y N
Sbjct: 472 --GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHN 513
>sp|Q63285|UHMK1_RAT Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1
PE=1 SV=1
Length = 419
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 6/94 (6%)
Query: 421 VLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLE 480
VL L + D L +++EYE+++ED++EEC KYG +V++++P+ E PG G+VF+E
Sbjct: 322 VLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPK------ENPGRGQVFVE 375
Query: 481 YYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514
Y +A A+ L+GR F G V A +YP Y
Sbjct: 376 YANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAY 409
>sp|P97343|UHMK1_MOUSE Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1
SV=3
Length = 419
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 6/94 (6%)
Query: 421 VLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLE 480
VL L + D L +++EYE+++ED++EEC KYG +V++++P+ E PG G+VF+E
Sbjct: 322 VLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPK------ENPGRGQVFVE 375
Query: 481 YYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514
Y +A A+ L+GR F G V A +YP Y
Sbjct: 376 YANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAY 409
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASGQSKTEQESI 384
NG + + L V A AS ++K E +S+
Sbjct: 78 NGREFSGRALRVDNA-ASEKNKEELKSL 104
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASGQSKTEQESI 384
NG + + L V A AS ++K E +S+
Sbjct: 78 NGREFSGRALRVDNA-ASEKNKEELKSL 104
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
R R V+VG +P A E+ + FS+V + + V + K + F E +
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFR------LVYDRETGKPKGYGFCEYQD 66
Query: 232 VEEASNAM-ALDGIIFEGVAVRV-RRPTDYNPTLAAALGPGQP 272
E A +AM L+G F G A+RV ++ N +LGP P
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASGQSKTEQESI 384
NG + + L V A AS ++K E +S+
Sbjct: 78 NGREFSGRALRVDNA-ASEKNKEELKSL 104
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 228
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 229 MRTVEEASNAM-ALDGIIFEGVAVRV 253
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASGQSKTEQESI 384
NG + + L V A AS ++K E +S+
Sbjct: 78 NGREFSGRALRVDNA-ASEKNKEELKSL 104
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 228
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 229 MRTVEEASNAM-ALDGIIFEGVAVRV 253
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G + F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASGQSKTEQESI 384
NG + + L V A AS ++K E +S+
Sbjct: 78 NGREFSGRALRVDNA-ASEKNKEELKSL 104
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVE 228
R R V+VG +P A E+ + FS+V GP + VY K + F E
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEV---------GPVVSFRLVYDRETGKPKGYGFCE 63
Query: 229 MRTVEEASNAM-ALDGIIFEGVAVRV 253
+ E A +AM L+G F G A+RV
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRV 89
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY TE Q+K++ G++ F LV DR+TG KGYGFC YQD A L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 357 NGLKMGDKTLTVRRATASGQSKTEQESI 384
NG + + L V A AS ++K E +S+
Sbjct: 78 NGREFSGRALRVDNA-ASEKNKEELKSL 104
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT 231
R R V+VG +P A E+ + FS+V + + V + K + F E +
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFR------LVYDRETGKPKGYGFCEYQD 66
Query: 232 VEEASNAM-ALDGIIFEGVAVRV-RRPTDYNPTLAAALGPGQP 272
E A +AM L+G F G A+RV ++ N +LGP P
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAP 109
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
K A+VE ++ A+ L G GV + V+ LAA
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAA---------------- 250
Query: 282 GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341
+A+ G GP R++VG L + TE ++ + E FG + L+KD DTG SKGYGF
Sbjct: 251 -MANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309
Query: 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
+ D A LNG ++ + + V T
Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVT 340
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FVGGLPY TE I + +G + +LV+D+ TG SKG+ F Y+D T +A
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 357 NGLKMGDKTLTV 368
NG+K+ +T+ V
Sbjct: 98 NGIKIKGRTIRV 109
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
V+VG +PY E Q+ ++ + G + F LV D ++G KGYGFC Y DPA A L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 357 NGLKMGDKTLTVRRATA 373
N G + L V TA
Sbjct: 67 NNYDAGTRRLRVDFPTA 83
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---IN 219
V+V Q +++VG LP + A+A F + AG + V +Y
Sbjct: 75 VEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFER---------AGNVEMVEVIYDKLTG 125
Query: 220 HEKKFAFVEMRTVEEASNA-MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
+ F FV M T EE A +G +G A+RV ++ G G+ N +
Sbjct: 126 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG-NSSY 184
Query: 279 AAVGLASGAIGGAEG------PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+ + GGA G +RV+VG L + + +KEL G + +V DRD+
Sbjct: 185 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 244
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
G S+G+GF Y + A +LNG+ + +++ V A
Sbjct: 245 GRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVG +PY +E Q+ E+ G + F LV D +TG+ KGYGFC + D T +A L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 357 NGLKMGDKTLTV 368
N ++G + + V
Sbjct: 69 NNSELGPRKIRV 80
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRV 109
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 275 NLNLAAVGLASGAIGGAEGPDR--VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
N +G+A +E D +F+GGLPY TE I + +G + +LV+D+ T
Sbjct: 14 NEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKT 73
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368
G SKG+ F Y+D T +A NG+K+ +T+ V
Sbjct: 74 GKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 109
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 163 VQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---IN 219
V+V Q +++VG LP + A+A F + AG + V +Y
Sbjct: 76 VEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFER---------AGNVEIVEVIYDKLSG 126
Query: 220 HEKKFAFVEMRTVEEASNA-MALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNL 278
+ F FV M T EE A +G +G A+RV ++ G G+ N +
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG-NSSY 185
Query: 279 AAVGLASGAIGGAEG------PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
+ + GGA G +RV+VG L + + +KEL G + +V DRD+
Sbjct: 186 GGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDS 245
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
G S+G+GF Y + A +LNG+ + +++ V A
Sbjct: 246 GRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 280 AVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
+VG+ +G G A+ + V LP T+ + K L S G + LV+D+ TG S GY
Sbjct: 19 SVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 78
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQS 377
GF Y DP D A LNGLK+ KT+ V A S S
Sbjct: 79 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 117
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 29/221 (13%)
Query: 177 VYVGGLPPLANEQAIATFFSQ---VMTA-------IGGNSAGPGDAVVNVYI-------- 218
+YV LP N++ + FSQ ++T+ G S G G + I
Sbjct: 123 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKG 182
Query: 219 -NHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQP 272
N +K E TV+ A+N AL +++ A R P ++ T P
Sbjct: 183 LNGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPL-HHQTQRFRFSPITI 241
Query: 273 SPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332
NLA V L G +FV L E+ + +L FG + +++D T
Sbjct: 242 DSVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTT 297
Query: 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 298 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 338
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 280 AVGLASGAIGGAE-GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY 338
VG+ +G G A+ + V LP T+ + K L S G + LV+D+ TG S GY
Sbjct: 18 CVGILNGTNGEADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 77
Query: 339 GFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQS 377
GF Y DP D A LNGLK+ KT+ V A S S
Sbjct: 78 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 116
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 33/226 (14%)
Query: 177 VYVGGLPPLANEQAIATFFSQ---VMTA------IGGNSAGPGDAVVNVYI--------- 218
+YV LP N++ + FSQ ++T+ + G S G G + I
Sbjct: 122 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181
Query: 219 NHEKKFAFVEMRTVEEASN-----AMALDGIIFEGVAVRVRRPTD-----YNP-TLAAAL 267
N +K E TV+ A+N AL +++ A R P ++P ++
Sbjct: 182 NGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFSPLSILPRF 241
Query: 268 GPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLV 327
P NLA V L G +FV L E+ + +L FG + ++
Sbjct: 242 SPITIDSVTNLAGVSLTGPTTAGW----CIFVYNLSPEADESVLWQLFGPFGAVTNVKVI 297
Query: 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373
+D T KG+GF + +A A+LNG ++GD+ L V T+
Sbjct: 298 RDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTS 343
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 31/223 (13%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++V LP + ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 122 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181
Query: 357 NGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIA------IQKMALQTSGMNTLG-- 408
NG K + + A+ S+ +++L Q A + + S ++ L
Sbjct: 182 NGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQRFSPLSILPRF 241
Query: 409 -----------GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLV 457
G+SL G T A ++ +A DE + + G +G +
Sbjct: 242 SPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEA---DESV------LWQLFGPFGAVT 292
Query: 458 NVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG 500
NV + R D + G G V + YD A A +L+G + G
Sbjct: 293 NVKVIR-DFTTNKCKGFGFVTMTNYDEAAMAIA--SLNGYRLG 332
>sp|Q3SZM1|MK67I_BOVIN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus
GN=MKI67IP PE=2 SV=1
Length = 296
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353
P ++VG LP ETQI+ FGT+ F L + + TGNSKGYGF ++ V IA
Sbjct: 44 PGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAA 103
Query: 354 AALNGLKMGDKTL 366
+N G++ L
Sbjct: 104 ETMNNYLFGERLL 116
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 127/345 (36%), Gaps = 59/345 (17%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P Q+ Q ++ + +++G L +E + + FSQ I + N
Sbjct: 73 PTQI--QSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVI------SVKIIRNKQTGQS 124
Query: 222 KKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV 281
+++ FVE T A + YN T+ P P L
Sbjct: 125 ERYGFVEFNTHAAAEKVL-----------------QSYNGTMM----PNTEQP-FRLNWA 162
Query: 282 GLASGAIGGAEGPD-RVFVGGLPYYFTETQIKELLES-FGTLHGFDLVKDRDTGNSKGYG 339
G ++G G D +FVG L T+T +++ S + +L G +V D +TG+SKGYG
Sbjct: 163 GFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYG 222
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMAL 399
F + D + A +NG+ + + + AT S EQ S A
Sbjct: 223 FVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAV------------ 270
Query: 400 QTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNV 459
L GG + G ++ + E E++R+ ++G +V+V
Sbjct: 271 ------ILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSV 324
Query: 460 VIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTV 504
IP G G F+++ D A LSG G V
Sbjct: 325 KIP---------AGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAV 360
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 115 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 165
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 166 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 214
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 215 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 266
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 267 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 308
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 24/147 (16%)
Query: 377 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 436
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 440 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 483
Query: 437 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 494
E E + EECGK+G VN VI ++ G E + K+F+E+ A A AL
Sbjct: 484 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQAL 537
Query: 495 SGRKFGGNTVNAFYYPEDKYFNKDYSA 521
+GR FGG V A Y ++++ N D SA
Sbjct: 538 NGRWFGGRKVVAEVYDQERFDNSDLSA 564
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 356 LNGLKMGDKTLTVRRATASGQSK 378
+N + +G + + V R + GQ++
Sbjct: 195 MNSVMLGGRNIKVGRPSNIGQAQ 217
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 115 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 165
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 166 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 214
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 215 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 266
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 267 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 308
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 24/147 (16%)
Query: 377 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 436
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 440 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 483
Query: 437 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 494
E E + EECGK+G VN VI ++ G E + K+F+E+ A A AL
Sbjct: 484 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQAL 537
Query: 495 SGRKFGGNTVNAFYYPEDKYFNKDYSA 521
+GR FGG V A Y ++++ N D SA
Sbjct: 538 NGRWFGGRKVVAEVYDQERFDNSDLSA 564
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 356 LNGLKMGDKTLTVRRATASGQSK 378
+N + +G + + V R + GQ++
Sbjct: 195 MNSVMLGGRNIKVGRPSNIGQAQ 217
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 110 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 160
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 161 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 209
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 210 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 261
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 262 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 303
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Query: 377 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 436
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 435 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 478
Query: 437 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 494
E E + EECGK+G VN VI ++ G E + K+F+E+ A A AL
Sbjct: 479 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 532
Query: 495 SGRKFGGNTVNAFYYPEDKYFNKDYSA 521
+GR F G V A Y ++++ N D SA
Sbjct: 533 NGRWFAGRKVVAEVYDQERFDNSDLSA 559
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 356 LNGLKMGDKTLTVRRATASGQSK 378
+N + +G + + V R + GQ++
Sbjct: 190 MNSVMLGGRNIKVGRPSNIGQAQ 212
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 34/200 (17%)
Query: 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP---GDAVVNVYINHEKKFAFVEMRTV 232
+++VG LP + + +A F ++AG + + N + + F FV M TV
Sbjct: 56 KLFVGNLPYDVDSEKLAGIF---------DAAGVVEIAEVIYNRETDRSRGFGFVTMSTV 106
Query: 233 EEASNAMAL-DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGA 291
EEA A+ L +G +G + V + AA G + +P G
Sbjct: 107 EEAEKAVELLNGYDMDGRQLTVNK--------AAPRGSPERAPR-------------GDF 145
Query: 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDI 351
E RV+VG LP+ +++++L G + +V DR+TG S+G+GF + +
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 352 ACAALNGLKMGDKTLTVRRA 371
A AAL+G + + + V A
Sbjct: 206 AIAALDGQTLDGRAVRVNVA 225
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 282 GLASGAIGGAEGPD--RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG 339
G G G +E P+ ++FVG LPY ++ + ++ G + +++ +R+T S+G+G
Sbjct: 40 GGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFG 99
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASG 375
F + A LNG M + LTV +A G
Sbjct: 100 FVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRG 135
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 109 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 159
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 160 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 208
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 209 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 260
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 261 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 302
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Query: 377 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 436
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 434 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 477
Query: 437 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 494
E E + EECGK+G VN VI ++ G E + K+F+E+ A A AL
Sbjct: 478 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 531
Query: 495 SGRKFGGNTVNAFYYPEDKYFNKDYSA 521
+GR F G V A Y ++++ N D SA
Sbjct: 532 NGRWFAGRKVVAEVYDQERFDNSDLSA 558
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query: 356 LNGLKMGDKTLTVRRATASGQSK 378
+N + +G + + V R + GQ++
Sbjct: 189 MNSVMLGGRNIKVGRPSNIGQAQ 211
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 159 PLMPVQVMTQQATRHAR---RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV- 214
PL P+Q M Q R RVYVG + E I F+ GP ++
Sbjct: 81 PLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF---------GPIKSIDM 131
Query: 215 ---NVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPG 270
+V + H K FAFVE E A A+ ++ ++ G ++V RP++ G
Sbjct: 132 SWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI----------G 180
Query: 271 QPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330
Q P ++ A A +R++V + ++ IK + E+FG + L +D
Sbjct: 181 QAQPIIDQLA--------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDP 232
Query: 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372
TG KGYGF Y+ + A +++N +G + L V +A
Sbjct: 233 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 274
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
RV+VG + Y E I++ FG + D+ D T KG+ F Y+ P +A
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 356 LNGLKMGDKTLTVRRATASGQSK 378
+N + +G + + V R + GQ++
Sbjct: 161 MNSVMLGGRNIKVGRPSNIGQAQ 183
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 24/147 (16%)
Query: 377 SKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD 436
S+ E SI + +H+ +QK L + + V+ L + + DD
Sbjct: 406 SEQEHMSISGSSARHMVMQK----------------LLRKQESTVMVLRNMVDPKDIDDD 449
Query: 437 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG--VGKVFLEYYDAVGCATAKNAL 494
E E + EECGK+G VN VI ++ G E + K+F+E+ A A L
Sbjct: 450 LEGE-----VTEECGKFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQDL 503
Query: 495 SGRKFGGNTVNAFYYPEDKYFNKDYSA 521
+GR F G V A Y ++++ N D SA
Sbjct: 504 NGRWFAGRKVVAEVYDQERFDNSDLSA 530
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 42/81 (51%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ + K L S G + LV+D+ TG S GYGF Y DP D A L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASGQS 377
NGLK+ KT+ V A S S
Sbjct: 101 NGLKLQTKTIKVSYARPSSAS 121
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV L E+ + +L FG + +++D T KG+GF + +A A+L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 357 NGLKMGDKTLTVRRATA 373
NG ++G++ L V T+
Sbjct: 346 NGYRLGERVLQVSFKTS 362
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 42/81 (51%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+ V LP T+ + K L S G + LV+D+ TG S GYGF Y DP D A L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 357 NGLKMGDKTLTVRRATASGQS 377
NGLK+ KT+ V A S S
Sbjct: 101 NGLKLQTKTIKVSYARPSSAS 121
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
+FV L E+ + +L FG + +++D T KG+GF + +A A+L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 357 NGLKMGDKTLTVRRATA 373
NG ++G++ L V T+
Sbjct: 346 NGYRLGERVLQVSFKTS 362
Score = 35.8 bits (81), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
++V GLP ++ ++++L +G + ++ D+ TG S+G GF + + A L
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 357 NGLK 360
NG K
Sbjct: 187 NGQK 190
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG----QH 53
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ + FVE + E+A A+ + +I G +RV + + +N NL++ A
Sbjct: 54 QGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNK-------------NLDVGA 100
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYG 339
+F+G L E + + +FG L +++D DTGNSKGY
Sbjct: 101 ---------------NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F + +D A A+NG + ++ +TV A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+A+G I V+VGGL +E + EL G + + KDR TG +GYGF
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASGQS 377
+ D A +N +K+ K + V +A+A ++
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKN 95
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTG----QH 53
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ + FVE + E+A A+ + +I G +RV + + +N NL++ A
Sbjct: 54 QGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNK-------------NLDVGA 100
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYG 339
+F+G L E + + +FG L +++D DTGNSKGY
Sbjct: 101 ---------------NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F + +D A A+NG + ++ +TV A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+A+G I V+VGGL +E + EL G + + KDR TG +GYGF
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASGQS 377
+ D A +N +K+ K + V +A+A ++
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKN 95
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356
VFVGG+PY TE + + +G + +LV+D+ TG SKG+ F Y+D T +A L
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 357 NGLKMGDKTLTV 368
NG K+ + + V
Sbjct: 98 NGAKVLGRIVRV 109
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 41/212 (19%)
Query: 162 PVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE 221
P+ Q AT VYVGGL +E + F Q + N+ P D V +
Sbjct: 5 PISERNQDAT-----VYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTGQH---- 53
Query: 222 KKFAFVEMRTVEEASNAMALDGII-FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAA 280
+ + FVE + E+A A+ + +I G +RV + + +N NL++ A
Sbjct: 54 QGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNK-------------NLDVGA 100
Query: 281 VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYG 339
+F+G L E + + +FG L +++D DTGNSKGY
Sbjct: 101 ---------------NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 340 FCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371
F + +D A A+NG + ++ +TV A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 283 LASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCV 342
+A+G I V+VGGL +E + EL G + + KDR TG +GYGF
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 343 YQDPAVTDIACAALNGLKMGDKTLTVRRATASGQS 377
+ D A +N +K+ K + V +A+A ++
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKN 95
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355
++FVGGLPY+ T++ +++ E FG + ++ DR TG S+GYGF D + D AC
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71
Query: 356 LNGLKMGDK 364
N + G K
Sbjct: 72 PNPIIDGRK 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,006,927
Number of Sequences: 539616
Number of extensions: 9414713
Number of successful extensions: 42185
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 574
Number of HSP's that attempted gapping in prelim test: 31169
Number of HSP's gapped (non-prelim): 6222
length of query: 521
length of database: 191,569,459
effective HSP length: 122
effective length of query: 399
effective length of database: 125,736,307
effective search space: 50168786493
effective search space used: 50168786493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)