Query 009954
Match_columns 521
No_of_seqs 339 out of 3323
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 19:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.8E-61 8.3E-66 502.8 45.7 396 110-519 110-509 (509)
2 TIGR01622 SF-CC1 splicing fact 100.0 5.3E-52 1.2E-56 427.8 33.7 316 171-516 86-452 (457)
3 KOG0120 Splicing factor U2AF, 100.0 1.4E-47 3E-52 373.6 24.6 387 101-520 106-500 (500)
4 TIGR01645 half-pint poly-U bin 100.0 1.7E-42 3.6E-47 351.2 33.0 322 171-521 104-612 (612)
5 KOG0147 Transcriptional coacti 100.0 6.8E-43 1.5E-47 335.1 21.0 317 170-517 175-533 (549)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-41 3.5E-46 338.3 27.5 292 174-514 3-351 (352)
7 TIGR01628 PABP-1234 polyadenyl 100.0 5.5E-36 1.2E-40 315.6 29.3 273 174-513 88-365 (562)
8 KOG0145 RNA-binding protein EL 100.0 7.8E-36 1.7E-40 259.2 23.8 292 172-512 39-358 (360)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 3.1E-36 6.8E-41 305.5 23.1 243 173-512 57-307 (578)
10 TIGR01628 PABP-1234 polyadenyl 100.0 6.2E-36 1.3E-40 315.3 23.8 254 176-511 2-260 (562)
11 KOG0117 Heterogeneous nuclear 100.0 1.7E-35 3.7E-40 276.3 23.4 245 172-512 81-331 (506)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.8E-35 1.3E-39 299.8 29.5 289 174-512 2-351 (481)
13 KOG0148 Apoptosis-promoting RN 100.0 2.6E-35 5.7E-40 257.8 16.9 236 171-512 3-238 (321)
14 KOG0127 Nucleolar protein fibr 100.0 1.8E-34 4E-39 275.3 20.4 323 175-511 6-377 (678)
15 KOG0124 Polypyrimidine tract-b 100.0 2.2E-34 4.7E-39 261.6 19.3 323 170-521 109-544 (544)
16 KOG0144 RNA-binding protein CU 100.0 3.8E-33 8.2E-38 259.3 21.0 173 169-376 29-208 (510)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.2E-32 6.9E-37 279.6 28.2 303 174-511 96-479 (481)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.2E-30 1.6E-34 267.1 29.7 192 173-373 294-501 (509)
19 TIGR01622 SF-CC1 splicing fact 100.0 1.2E-29 2.6E-34 261.7 25.4 176 295-511 90-265 (457)
20 TIGR01659 sex-lethal sex-letha 100.0 3.4E-30 7.3E-35 249.6 18.2 170 170-374 103-275 (346)
21 TIGR01659 sex-lethal sex-letha 100.0 2.8E-29 6.1E-34 243.2 20.2 172 292-515 105-278 (346)
22 KOG0123 Polyadenylate-binding 100.0 5.4E-29 1.2E-33 242.2 19.6 242 176-511 3-245 (369)
23 KOG0123 Polyadenylate-binding 100.0 2.6E-28 5.6E-33 237.5 19.2 290 155-512 59-349 (369)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.2E-27 7E-32 235.5 20.5 197 173-375 88-350 (352)
25 TIGR01645 half-pint poly-U bin 100.0 3.3E-27 7.1E-32 240.0 18.8 175 294-511 107-283 (612)
26 KOG0148 Apoptosis-promoting RN 99.9 2.2E-27 4.7E-32 208.3 13.4 178 174-376 62-240 (321)
27 KOG0110 RNA-binding protein (R 99.9 4.7E-25 1E-29 218.3 18.4 290 170-514 381-695 (725)
28 KOG0144 RNA-binding protein CU 99.9 5.7E-25 1.2E-29 205.0 13.9 173 293-517 33-211 (510)
29 KOG0131 Splicing factor 3b, su 99.9 2.9E-25 6.2E-30 183.9 10.5 172 172-377 7-180 (203)
30 KOG0145 RNA-binding protein EL 99.9 7.6E-24 1.7E-28 184.7 14.5 170 290-511 37-208 (360)
31 KOG0131 Splicing factor 3b, su 99.9 8.5E-24 1.8E-28 175.2 11.3 171 292-513 7-178 (203)
32 KOG0124 Polypyrimidine tract-b 99.9 1E-23 2.3E-28 192.2 12.6 173 295-508 114-286 (544)
33 TIGR01648 hnRNP-R-Q heterogene 99.9 1.3E-22 2.7E-27 206.6 21.0 200 232-513 19-223 (578)
34 KOG0147 Transcriptional coacti 99.9 5.5E-23 1.2E-27 198.5 15.8 177 296-512 181-358 (549)
35 KOG0117 Heterogeneous nuclear 99.9 1.1E-22 2.4E-27 190.9 16.1 164 171-377 161-334 (506)
36 KOG0127 Nucleolar protein fibr 99.9 4.4E-22 9.6E-27 190.9 14.0 195 295-516 6-200 (678)
37 KOG0109 RNA-binding protein LA 99.9 2.3E-22 4.9E-27 178.6 10.4 146 175-373 3-149 (346)
38 KOG1548 Transcription elongati 99.9 5.8E-21 1.3E-25 173.9 17.9 208 294-512 134-352 (382)
39 KOG0109 RNA-binding protein LA 99.9 4.3E-21 9.3E-26 170.5 12.1 149 295-513 3-151 (346)
40 KOG1190 Polypyrimidine tract-b 99.8 1.4E-20 3E-25 174.7 13.3 304 173-509 27-370 (492)
41 KOG0146 RNA-binding protein ET 99.8 6.3E-20 1.4E-24 160.9 14.0 202 294-512 19-365 (371)
42 KOG0110 RNA-binding protein (R 99.8 2.2E-20 4.7E-25 185.5 12.3 167 175-373 516-692 (725)
43 KOG0120 Splicing factor U2AF, 99.8 1.5E-19 3.3E-24 177.6 17.7 188 171-373 286-491 (500)
44 KOG1190 Polypyrimidine tract-b 99.8 8.5E-19 1.9E-23 162.9 19.7 297 174-510 150-489 (492)
45 KOG4212 RNA-binding protein hn 99.8 6.5E-18 1.4E-22 158.1 23.4 190 173-370 43-290 (608)
46 KOG4211 Splicing factor hnRNP- 99.8 2.6E-18 5.5E-23 164.2 16.4 171 174-373 10-181 (510)
47 KOG0105 Alternative splicing f 99.8 5.2E-18 1.1E-22 140.9 15.3 172 172-369 4-185 (241)
48 KOG4205 RNA-binding protein mu 99.8 2.6E-19 5.5E-24 168.1 7.2 173 173-375 5-177 (311)
49 KOG0146 RNA-binding protein ET 99.8 2E-18 4.4E-23 151.6 11.5 83 293-375 284-366 (371)
50 KOG1456 Heterogeneous nuclear 99.8 5.8E-17 1.3E-21 148.9 19.5 282 174-512 31-363 (494)
51 KOG4206 Spliceosomal protein s 99.7 4E-17 8.6E-22 141.7 15.5 185 174-372 9-220 (221)
52 PLN03134 glycine-rich RNA-bind 99.7 4.2E-17 9.1E-22 138.3 13.4 83 292-374 32-114 (144)
53 KOG4206 Spliceosomal protein s 99.7 3.3E-16 7E-21 136.1 14.0 195 295-510 10-220 (221)
54 KOG1365 RNA-binding protein Fu 99.7 4.7E-16 1E-20 143.5 13.3 290 173-515 59-365 (508)
55 KOG1457 RNA binding protein (c 99.7 3.3E-15 7.1E-20 128.2 16.2 180 169-361 29-273 (284)
56 KOG0105 Alternative splicing f 99.7 4.5E-15 9.7E-20 123.6 14.9 182 293-517 5-195 (241)
57 KOG1456 Heterogeneous nuclear 99.6 1.2E-13 2.7E-18 127.3 21.7 299 179-512 127-491 (494)
58 PF00076 RRM_1: RNA recognitio 99.6 5.6E-15 1.2E-19 110.1 9.9 70 297-367 1-70 (70)
59 KOG4205 RNA-binding protein mu 99.6 1.3E-15 2.9E-20 143.1 7.6 175 293-515 5-179 (311)
60 KOG0106 Alternative splicing f 99.6 2.1E-15 4.5E-20 132.8 8.0 165 175-370 2-167 (216)
61 KOG0122 Translation initiation 99.6 9E-15 1.9E-19 127.7 9.6 81 293-373 188-268 (270)
62 KOG1548 Transcription elongati 99.6 4.1E-14 8.9E-19 129.6 13.7 194 174-373 134-351 (382)
63 KOG0106 Alternative splicing f 99.6 7.5E-15 1.6E-19 129.3 8.4 161 296-509 3-168 (216)
64 PF14259 RRM_6: RNA recognitio 99.5 4.8E-14 1E-18 104.9 9.3 70 297-367 1-70 (70)
65 KOG0121 Nuclear cap-binding pr 99.5 2.4E-14 5.3E-19 112.0 7.6 80 293-372 35-114 (153)
66 KOG4207 Predicted splicing fac 99.5 1.9E-14 4.1E-19 122.1 7.4 83 291-373 10-92 (256)
67 KOG0132 RNA polymerase II C-te 99.5 9.5E-14 2.1E-18 139.5 13.4 76 171-258 418-494 (894)
68 KOG4212 RNA-binding protein hn 99.5 5.1E-13 1.1E-17 125.7 15.9 198 295-508 45-290 (608)
69 KOG0125 Ataxin 2-binding prote 99.5 1E-13 2.3E-18 126.0 10.5 84 288-373 90-173 (376)
70 KOG4211 Splicing factor hnRNP- 99.5 4.7E-13 1E-17 128.5 15.4 171 294-511 10-181 (510)
71 KOG0113 U1 small nuclear ribon 99.5 1.5E-13 3.2E-18 123.5 10.3 82 292-373 99-180 (335)
72 PLN03134 glycine-rich RNA-bind 99.5 9.5E-14 2.1E-18 117.8 8.7 85 170-260 30-115 (144)
73 KOG0107 Alternative splicing f 99.5 8.8E-14 1.9E-18 115.3 8.0 75 294-373 10-84 (195)
74 PLN03120 nucleic acid binding 99.5 2.2E-13 4.9E-18 123.3 11.2 75 295-373 5-79 (260)
75 KOG0126 Predicted RNA-binding 99.5 5.5E-15 1.2E-19 122.9 0.7 82 296-377 37-118 (219)
76 KOG0114 Predicted RNA-binding 99.5 2.9E-13 6.3E-18 101.8 9.4 79 292-373 16-94 (124)
77 KOG4307 RNA binding protein RB 99.5 5E-12 1.1E-16 125.6 20.5 193 172-373 309-513 (944)
78 KOG0130 RNA-binding protein RB 99.5 1.2E-13 2.5E-18 109.1 6.2 82 295-376 73-154 (170)
79 KOG0149 Predicted RNA-binding 99.4 2.4E-13 5.1E-18 118.5 7.2 80 293-373 11-90 (247)
80 COG0724 RNA-binding proteins ( 99.4 2.5E-12 5.5E-17 124.3 13.1 80 294-373 115-194 (306)
81 KOG1457 RNA binding protein (c 99.4 3.3E-12 7.1E-17 110.0 11.8 82 292-373 32-117 (284)
82 smart00362 RRM_2 RNA recogniti 99.4 2.3E-12 4.9E-17 96.1 9.7 72 296-369 1-72 (72)
83 PLN03121 nucleic acid binding 99.4 2.5E-12 5.4E-17 114.5 11.2 75 295-373 6-80 (243)
84 PLN03213 repressor of silencin 99.4 1.6E-12 3.4E-17 124.2 10.3 76 294-373 10-87 (759)
85 PF13893 RRM_5: RNA recognitio 99.4 3.2E-12 6.9E-17 90.2 8.4 56 446-509 1-56 (56)
86 smart00360 RRM RNA recognition 99.4 3.2E-12 7E-17 94.9 8.9 71 299-369 1-71 (71)
87 PLN03120 nucleic acid binding 99.3 5.8E-12 1.3E-16 114.2 9.1 76 174-261 4-82 (260)
88 cd00590 RRM RRM (RNA recogniti 99.3 1.9E-11 4E-16 91.6 10.5 74 296-370 1-74 (74)
89 smart00361 RRM_1 RNA recogniti 99.3 1.2E-11 2.5E-16 91.5 8.7 62 308-369 2-70 (70)
90 KOG4207 Predicted splicing fac 99.3 4.2E-12 9.1E-17 108.1 6.5 74 436-512 20-93 (256)
91 KOG0108 mRNA cleavage and poly 99.3 5.8E-12 1.3E-16 124.0 8.5 79 295-373 19-97 (435)
92 PF13893 RRM_5: RNA recognitio 99.3 1.5E-11 3.3E-16 86.7 8.1 56 311-371 1-56 (56)
93 KOG0111 Cyclophilin-type pepti 99.3 2E-12 4.3E-17 110.9 4.1 81 293-373 9-89 (298)
94 KOG0125 Ataxin 2-binding prote 99.3 1.4E-11 3E-16 112.4 9.6 79 169-259 91-174 (376)
95 KOG0107 Alternative splicing f 99.3 6.9E-12 1.5E-16 104.2 6.4 74 173-258 9-84 (195)
96 COG0724 RNA-binding proteins ( 99.3 2.3E-11 5.1E-16 117.5 11.3 169 174-354 115-285 (306)
97 PF00076 RRM_1: RNA recognitio 99.3 8.6E-12 1.9E-16 92.7 5.7 68 177-252 1-70 (70)
98 KOG0121 Nuclear cap-binding pr 99.3 1E-11 2.3E-16 97.4 6.3 78 169-258 31-115 (153)
99 KOG0132 RNA polymerase II C-te 99.3 1.1E-10 2.4E-15 117.9 15.1 78 295-378 422-499 (894)
100 smart00361 RRM_1 RNA recogniti 99.2 3.3E-11 7.2E-16 89.1 7.9 63 442-507 5-70 (70)
101 KOG1365 RNA-binding protein Fu 99.2 6.8E-12 1.5E-16 116.3 5.0 191 176-372 163-360 (508)
102 KOG0149 Predicted RNA-binding 99.2 7.2E-12 1.6E-16 109.4 4.5 80 172-257 10-89 (247)
103 KOG0122 Translation initiation 99.2 2.1E-11 4.7E-16 106.8 6.1 83 170-258 185-268 (270)
104 PLN03121 nucleic acid binding 99.2 7.5E-11 1.6E-15 105.1 8.9 76 174-261 5-83 (243)
105 KOG0126 Predicted RNA-binding 99.2 1.4E-12 3.1E-17 108.6 -2.5 91 166-262 27-118 (219)
106 KOG0129 Predicted RNA-binding 99.1 5.6E-10 1.2E-14 108.5 13.3 172 171-355 256-432 (520)
107 KOG0130 RNA-binding protein RB 99.1 1.1E-10 2.3E-15 92.5 4.1 82 171-258 69-151 (170)
108 KOG0114 Predicted RNA-binding 99.1 2.2E-10 4.8E-15 86.5 5.2 69 439-513 28-96 (124)
109 KOG4307 RNA binding protein RB 99.1 5.1E-10 1.1E-14 111.5 9.2 196 295-514 312-516 (944)
110 PF14259 RRM_6: RNA recognitio 99.0 3.4E-10 7.3E-15 84.0 5.8 61 441-505 10-70 (70)
111 KOG4660 Protein Mei2, essentia 99.0 1.7E-09 3.6E-14 106.2 11.9 178 169-373 70-249 (549)
112 KOG0226 RNA-binding proteins [ 99.0 6.3E-10 1.4E-14 98.2 8.1 131 219-372 137-268 (290)
113 KOG4208 Nucleolar RNA-binding 99.0 1E-09 2.2E-14 94.3 8.6 81 293-373 48-129 (214)
114 smart00362 RRM_2 RNA recogniti 99.0 1.1E-09 2.5E-14 81.2 8.1 67 176-254 1-72 (72)
115 PLN03213 repressor of silencin 99.0 6.3E-10 1.4E-14 106.7 7.9 73 174-258 10-87 (759)
116 KOG0415 Predicted peptidyl pro 99.0 6.4E-10 1.4E-14 102.4 7.1 82 292-373 237-318 (479)
117 KOG0111 Cyclophilin-type pepti 99.0 1.7E-10 3.7E-15 99.2 3.1 83 171-259 7-90 (298)
118 KOG0108 mRNA cleavage and poly 99.0 2.3E-10 5E-15 112.9 4.1 81 175-261 19-100 (435)
119 KOG0113 U1 small nuclear ribon 99.0 7.8E-10 1.7E-14 99.8 6.9 78 172-255 99-177 (335)
120 smart00360 RRM RNA recognition 99.0 1E-09 2.2E-14 81.3 6.4 62 443-507 10-71 (71)
121 KOG1996 mRNA splicing factor [ 98.9 1E-09 2.2E-14 98.6 4.7 97 417-520 279-375 (378)
122 KOG4661 Hsp27-ERE-TATA-binding 98.9 7.8E-09 1.7E-13 100.9 10.8 81 293-373 404-484 (940)
123 KOG0153 Predicted RNA-binding 98.9 8.3E-09 1.8E-13 95.3 9.1 76 292-373 226-302 (377)
124 cd00590 RRM RRM (RNA recogniti 98.9 1.2E-08 2.6E-13 76.1 8.3 68 176-255 1-74 (74)
125 KOG4454 RNA binding protein (R 98.9 3.8E-10 8.3E-15 97.2 -0.4 138 172-364 7-153 (267)
126 KOG4210 Nuclear localization s 98.8 2.5E-09 5.4E-14 100.9 4.5 176 172-373 86-263 (285)
127 KOG4208 Nucleolar RNA-binding 98.8 8.4E-09 1.8E-13 88.7 7.2 65 445-512 65-130 (214)
128 KOG0112 Large RNA-binding prot 98.8 1.7E-09 3.8E-14 111.2 3.2 158 293-511 371-530 (975)
129 KOG0128 RNA-binding protein SA 98.8 1.9E-10 4.1E-15 117.8 -3.8 236 174-510 571-813 (881)
130 KOG0112 Large RNA-binding prot 98.8 3.1E-09 6.8E-14 109.4 4.4 162 170-375 368-532 (975)
131 KOG0128 RNA-binding protein SA 98.8 3.1E-10 6.6E-15 116.2 -4.0 151 171-373 664-814 (881)
132 KOG4660 Protein Mei2, essentia 98.7 1.2E-08 2.5E-13 100.3 4.8 174 294-510 75-248 (549)
133 KOG0415 Predicted peptidyl pro 98.7 2.9E-08 6.2E-13 91.7 6.6 78 416-508 238-315 (479)
134 KOG0533 RRM motif-containing p 98.7 8.2E-08 1.8E-12 87.2 9.2 81 292-373 81-161 (243)
135 KOG4454 RNA binding protein (R 98.7 7.5E-09 1.6E-13 89.3 1.9 159 292-514 7-176 (267)
136 KOG0153 Predicted RNA-binding 98.7 4.3E-08 9.3E-13 90.7 6.9 79 168-258 222-302 (377)
137 KOG4661 Hsp27-ERE-TATA-binding 98.6 1E-07 2.3E-12 93.2 7.9 82 171-258 402-484 (940)
138 KOG0151 Predicted splicing reg 98.6 2.1E-07 4.6E-12 93.7 8.5 83 291-373 171-256 (877)
139 KOG0226 RNA-binding proteins [ 98.5 3.7E-08 8.1E-13 87.2 2.7 147 312-507 117-265 (290)
140 KOG4210 Nuclear localization s 98.5 6.1E-08 1.3E-12 91.6 3.9 176 293-513 87-265 (285)
141 PF04059 RRM_2: RNA recognitio 98.5 9.6E-07 2.1E-11 68.4 9.7 79 295-373 2-86 (97)
142 KOG4209 Splicing factor RNPS1, 98.5 2.2E-07 4.7E-12 84.8 5.6 80 293-373 100-179 (231)
143 KOG2202 U2 snRNP splicing fact 98.4 1.2E-07 2.6E-12 84.6 2.6 76 437-516 76-152 (260)
144 KOG0116 RasGAP SH3 binding pro 98.4 6.3E-07 1.4E-11 88.3 7.4 79 294-373 288-366 (419)
145 KOG4676 Splicing factor, argin 98.4 3.2E-07 6.9E-12 86.1 4.9 179 176-362 9-214 (479)
146 KOG0129 Predicted RNA-binding 98.3 9E-06 2E-10 79.8 12.1 162 293-493 258-432 (520)
147 KOG4676 Splicing factor, argin 98.2 3.9E-06 8.4E-11 79.0 8.3 197 295-512 8-226 (479)
148 KOG2193 IGF-II mRNA-binding pr 98.2 6.8E-08 1.5E-12 91.3 -3.4 152 175-373 2-156 (584)
149 PF11608 Limkain-b1: Limkain b 98.2 6.4E-06 1.4E-10 60.4 7.3 68 296-373 4-76 (90)
150 KOG0116 RasGAP SH3 binding pro 98.1 9.9E-06 2.1E-10 80.0 8.4 76 172-255 286-363 (419)
151 KOG2193 IGF-II mRNA-binding pr 98.1 2.5E-07 5.3E-12 87.6 -2.9 159 295-516 2-161 (584)
152 PF04059 RRM_2: RNA recognitio 98.0 2E-05 4.3E-10 61.1 6.7 79 175-257 2-85 (97)
153 COG5175 MOT2 Transcriptional r 98.0 1.8E-05 4E-10 73.0 7.4 84 420-510 118-201 (480)
154 KOG1995 Conserved Zn-finger pr 98.0 7.3E-06 1.6E-10 76.9 4.7 82 292-373 64-153 (351)
155 KOG0533 RRM motif-containing p 97.9 3.3E-05 7.1E-10 70.4 7.3 68 444-515 98-165 (243)
156 PF08777 RRM_3: RNA binding mo 97.9 2.2E-05 4.7E-10 62.5 5.4 71 295-371 2-77 (105)
157 KOG0151 Predicted splicing reg 97.9 1.9E-05 4.1E-10 80.0 5.8 81 171-258 171-256 (877)
158 PF11608 Limkain-b1: Limkain b 97.9 0.00014 3E-09 53.5 8.7 70 176-256 4-74 (90)
159 KOG4209 Splicing factor RNPS1, 97.8 1E-05 2.2E-10 73.9 2.8 83 169-257 96-178 (231)
160 KOG1996 mRNA splicing factor [ 97.7 0.00012 2.6E-09 66.5 7.0 77 297-373 284-366 (378)
161 KOG4849 mRNA cleavage factor I 97.7 5.1E-05 1.1E-09 70.4 4.8 79 295-373 81-161 (498)
162 PF06495 Transformer: Fruit fl 97.7 0.0002 4.4E-09 59.9 7.7 16 111-126 116-131 (182)
163 COG5175 MOT2 Transcriptional r 97.7 0.00012 2.6E-09 67.8 6.9 79 295-373 115-202 (480)
164 KOG2314 Translation initiation 97.6 0.00034 7.4E-09 69.4 9.2 85 417-509 56-141 (698)
165 PF08952 DUF1866: Domain of un 97.5 0.00084 1.8E-08 55.7 9.5 61 440-512 47-107 (146)
166 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00025 5.3E-09 48.6 5.4 52 295-353 2-53 (53)
167 KOG2314 Translation initiation 97.5 0.00035 7.7E-09 69.3 8.4 77 295-372 59-142 (698)
168 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.00093 2E-08 52.3 7.0 77 295-373 7-91 (100)
169 KOG2202 U2 snRNP splicing fact 97.3 0.00012 2.6E-09 65.8 2.1 64 309-373 83-147 (260)
170 PF08777 RRM_3: RNA binding mo 97.3 0.00077 1.7E-08 53.7 6.3 58 444-510 16-78 (105)
171 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00085 1.8E-08 46.0 5.4 52 175-239 2-53 (53)
172 KOG0115 RNA-binding protein p5 97.2 0.00083 1.8E-08 60.3 6.3 100 235-371 7-111 (275)
173 KOG1995 Conserved Zn-finger pr 97.2 0.00043 9.4E-09 65.3 4.4 90 171-260 63-155 (351)
174 KOG3152 TBP-binding protein, a 97.1 0.00036 7.9E-09 62.5 3.0 71 295-365 75-157 (278)
175 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0039 8.5E-08 48.8 7.5 83 173-256 5-89 (100)
176 KOG1855 Predicted RNA-binding 96.9 0.00076 1.6E-08 64.9 3.3 67 293-359 230-309 (484)
177 KOG1855 Predicted RNA-binding 96.8 0.001 2.3E-08 63.9 3.9 72 417-498 229-310 (484)
178 PF08675 RNA_bind: RNA binding 96.8 0.0078 1.7E-07 44.5 7.0 53 297-357 11-63 (87)
179 PF10309 DUF2414: Protein of u 96.7 0.011 2.4E-07 41.5 6.9 55 294-356 5-62 (62)
180 PF08952 DUF1866: Domain of un 96.6 0.012 2.5E-07 49.0 7.9 56 309-373 51-106 (146)
181 KOG0115 RNA-binding protein p5 96.5 0.0051 1.1E-07 55.4 5.6 93 347-499 5-97 (275)
182 KOG2135 Proteins containing th 96.4 0.019 4.2E-07 56.3 9.4 75 172-258 370-445 (526)
183 KOG2416 Acinus (induces apopto 96.4 0.0034 7.4E-08 62.9 4.1 76 292-373 442-521 (718)
184 KOG2548 SWAP mRNA splicing reg 96.4 0.007 1.5E-07 59.8 6.0 16 180-195 555-570 (653)
185 KOG3263 Nucleic acid binding p 96.3 0.00057 1.2E-08 57.0 -1.4 11 189-199 141-151 (196)
186 PF15023 DUF4523: Protein of u 96.1 0.019 4E-07 47.0 6.2 55 444-509 105-159 (166)
187 PF04847 Calcipressin: Calcipr 96.1 0.016 3.4E-07 51.1 6.2 63 442-513 8-72 (184)
188 KOG3152 TBP-binding protein, a 95.9 0.0043 9.4E-08 55.8 1.9 76 418-503 73-157 (278)
189 KOG2416 Acinus (induces apopto 95.3 0.012 2.6E-07 59.2 2.8 77 170-257 440-520 (718)
190 PF10567 Nab6_mRNP_bdg: RNA-re 95.3 0.43 9.3E-06 44.4 12.5 194 295-510 16-227 (309)
191 KOG2591 c-Mpl binding protein, 95.2 0.059 1.3E-06 54.0 7.2 68 295-369 176-247 (684)
192 KOG4849 mRNA cleavage factor I 95.0 0.03 6.6E-07 52.6 4.3 80 172-255 78-158 (498)
193 PF15023 DUF4523: Protein of u 94.9 0.079 1.7E-06 43.5 5.9 71 295-373 87-161 (166)
194 KOG2135 Proteins containing th 94.8 0.017 3.7E-07 56.6 2.3 58 444-511 388-445 (526)
195 KOG2068 MOT2 transcription fac 94.6 0.014 2.9E-07 55.1 1.1 78 296-373 79-162 (327)
196 KOG2068 MOT2 transcription fac 94.5 0.018 3.9E-07 54.3 1.7 65 447-511 98-162 (327)
197 PF07576 BRAP2: BRCA1-associat 94.5 0.27 5.8E-06 39.4 7.9 53 444-501 28-81 (110)
198 KOG4285 Mitotic phosphoprotein 94.5 0.17 3.7E-06 46.9 7.7 76 174-262 197-273 (350)
199 PF07576 BRAP2: BRCA1-associat 94.3 0.56 1.2E-05 37.5 9.5 66 296-363 15-81 (110)
200 KOG4285 Mitotic phosphoprotein 94.2 0.086 1.9E-06 48.8 5.2 57 445-511 212-269 (350)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.059 1.3E-06 47.4 3.9 79 295-373 8-97 (176)
202 KOG4574 RNA-binding protein (c 94.0 0.036 7.9E-07 58.2 2.7 71 297-373 301-373 (1007)
203 PF04847 Calcipressin: Calcipr 93.3 0.22 4.8E-06 44.0 6.1 61 307-373 8-70 (184)
204 KOG2253 U1 snRNP complex, subu 92.7 0.12 2.7E-06 53.1 4.1 69 171-254 37-106 (668)
205 PF10309 DUF2414: Protein of u 92.5 0.72 1.6E-05 32.5 6.5 54 175-239 6-59 (62)
206 PF08675 RNA_bind: RNA binding 91.2 1.6 3.5E-05 32.6 7.3 41 444-495 23-63 (87)
207 PF03880 DbpA: DbpA RNA bindin 91.0 1.2 2.6E-05 32.9 6.7 59 304-371 11-74 (74)
208 KOG0804 Cytoplasmic Zn-finger 90.6 0.37 7.9E-06 47.4 4.6 67 417-501 75-142 (493)
209 KOG0804 Cytoplasmic Zn-finger 90.6 0.99 2.2E-05 44.5 7.5 68 294-363 74-142 (493)
210 KOG4574 RNA-binding protein (c 89.6 0.41 9E-06 50.7 4.3 72 436-516 305-378 (1007)
211 KOG0670 U4/U6-associated splic 89.0 0.45 9.7E-06 48.1 3.9 16 311-326 520-535 (752)
212 KOG2253 U1 snRNP complex, subu 88.4 0.58 1.3E-05 48.4 4.3 71 292-371 38-108 (668)
213 KOG2891 Surface glycoprotein [ 87.2 0.29 6.3E-06 44.7 1.3 82 292-373 147-267 (445)
214 PF07292 NID: Nmi/IFP 35 domai 86.8 0.53 1.1E-05 35.8 2.3 72 225-316 1-74 (88)
215 KOG4246 Predicted DNA-binding 86.7 0.35 7.7E-06 50.9 1.7 6 477-482 972-977 (1194)
216 KOG2591 c-Mpl binding protein, 84.9 2.4 5.2E-05 43.0 6.4 53 444-506 190-246 (684)
217 PF11767 SET_assoc: Histone ly 82.4 4.6 0.0001 28.9 5.4 51 444-506 15-65 (66)
218 PF03467 Smg4_UPF3: Smg-4/UPF3 81.3 0.64 1.4E-05 40.9 0.8 67 173-248 6-82 (176)
219 PF03880 DbpA: DbpA RNA bindin 79.2 7.5 0.00016 28.6 5.9 53 445-509 17-74 (74)
220 PF11767 SET_assoc: Histone ly 78.4 11 0.00023 27.1 6.1 55 305-368 11-65 (66)
221 PF02956 TT_ORF1: TT viral orf 74.5 2.7 5.8E-05 43.9 3.2 11 187-197 117-127 (525)
222 PF15513 DUF4651: Domain of un 73.3 7.3 0.00016 27.3 4.0 28 440-467 5-32 (62)
223 KOG1882 Transcriptional regula 73.1 3.8 8.2E-05 37.1 3.3 13 335-347 215-227 (293)
224 KOG4410 5-formyltetrahydrofola 73.0 9.5 0.00021 35.4 5.8 49 175-234 331-379 (396)
225 KOG2891 Surface glycoprotein [ 71.7 1.7 3.7E-05 39.8 0.8 76 416-499 156-247 (445)
226 KOG2318 Uncharacterized conser 70.3 31 0.00066 35.7 9.2 83 291-373 171-307 (650)
227 PF07530 PRE_C2HC: Associated 68.2 14 0.00029 26.7 4.7 62 309-373 2-64 (68)
228 PF02956 TT_ORF1: TT viral orf 67.1 5.1 0.00011 41.9 3.3 15 186-200 113-127 (525)
229 PF14111 DUF4283: Domain of un 66.9 4.6 0.0001 34.5 2.5 120 176-329 17-140 (153)
230 KOG1882 Transcriptional regula 63.9 8.7 0.00019 34.8 3.6 8 228-235 160-167 (293)
231 KOG4019 Calcineurin-mediated s 60.7 9.6 0.00021 33.0 3.2 58 445-511 31-89 (193)
232 KOG4410 5-formyltetrahydrofola 59.9 51 0.0011 30.8 7.8 46 295-346 331-377 (396)
233 PF03468 XS: XS domain; Inter 59.3 13 0.00028 30.2 3.6 50 296-348 10-68 (116)
234 KOG4019 Calcineurin-mediated s 57.9 13 0.00029 32.2 3.5 74 294-373 10-89 (193)
235 KOG3869 Uncharacterized conser 57.9 7.6 0.00016 38.1 2.4 13 186-198 361-373 (450)
236 KOG4483 Uncharacterized conser 55.6 41 0.0009 33.0 6.8 57 292-355 389-446 (528)
237 smart00596 PRE_C2HC PRE_C2HC d 51.2 39 0.00084 24.4 4.4 62 309-373 2-64 (69)
238 KOG2318 Uncharacterized conser 48.4 91 0.002 32.5 8.2 77 171-255 171-304 (650)
239 PRK14548 50S ribosomal protein 45.8 1.1E+02 0.0023 23.3 6.3 57 297-356 23-81 (84)
240 PRK03717 ribonuclease P protei 43.4 92 0.002 25.4 6.2 71 430-507 26-98 (120)
241 PF11671 Apis_Csd: Complementa 43.1 2.7 5.8E-05 33.9 -2.6 8 129-136 89-96 (146)
242 PF15513 DUF4651: Domain of un 42.1 68 0.0015 22.6 4.4 19 309-327 9-27 (62)
243 TIGR03636 L23_arch archaeal ri 40.7 1.5E+02 0.0033 22.0 6.4 57 297-356 16-74 (77)
244 cd06398 PB1_Joka2 The PB1 doma 40.2 1.3E+02 0.0028 23.2 6.3 62 436-507 24-85 (91)
245 COG1098 VacB Predicted RNA bin 39.2 76 0.0017 25.8 4.9 42 477-520 21-70 (129)
246 KOG2295 C2H2 Zn-finger protein 38.4 4.9 0.00011 40.9 -2.2 72 294-365 231-302 (648)
247 smart00596 PRE_C2HC PRE_C2HC d 37.5 43 0.00093 24.2 2.9 59 445-509 3-62 (69)
248 PF03439 Spt5-NGN: Early trans 36.6 63 0.0014 24.4 4.0 39 455-501 33-71 (84)
249 KOG4213 RNA-binding protein La 36.5 95 0.0021 27.1 5.4 56 444-504 124-179 (205)
250 KOG3580 Tight junction protein 36.0 82 0.0018 32.9 5.7 12 362-373 540-551 (1027)
251 PRK11901 hypothetical protein; 33.8 95 0.0021 30.0 5.5 59 295-358 246-306 (327)
252 cd04883 ACT_AcuB C-terminal AC 33.1 1.8E+02 0.0038 20.6 6.5 50 444-499 16-68 (72)
253 PF07530 PRE_C2HC: Associated 33.0 53 0.0012 23.7 2.9 61 444-510 2-63 (68)
254 COG0858 RbfA Ribosome-binding 32.0 40 0.00088 27.4 2.4 57 452-515 32-95 (118)
255 PF08544 GHMP_kinases_C: GHMP 31.3 1.6E+02 0.0035 21.6 5.7 45 444-496 37-81 (85)
256 PF14111 DUF4283: Domain of un 31.2 32 0.0007 29.1 1.9 62 438-511 30-91 (153)
257 KOG4365 Uncharacterized conser 30.5 9.4 0.0002 37.7 -1.7 78 295-373 4-81 (572)
258 KOG4483 Uncharacterized conser 30.2 1.4E+02 0.0031 29.5 6.0 56 174-241 391-446 (528)
259 PRK13817 ribosome-binding fact 29.1 70 0.0015 26.0 3.4 56 453-515 31-91 (119)
260 COG1369 POP5 RNase P/RNase MRP 29.1 3.2E+02 0.007 22.4 7.2 77 426-508 22-99 (124)
261 PRK12678 transcription termina 29.1 96 0.0021 32.9 5.1 10 362-371 501-510 (672)
262 KOG3580 Tight junction protein 29.1 1E+02 0.0022 32.2 5.1 39 332-372 666-716 (1027)
263 PF08156 NOP5NT: NOP5NT (NUC12 29.0 28 0.0006 25.1 0.9 38 445-495 28-65 (67)
264 COG4010 Uncharacterized protei 28.7 1.8E+02 0.0038 24.4 5.5 46 301-356 118-163 (170)
265 KOG0334 RNA helicase [RNA proc 28.6 22 0.00047 39.6 0.5 8 241-248 350-357 (997)
266 cd04882 ACT_Bt0572_2 C-termina 28.3 1.8E+02 0.0039 19.9 5.2 48 444-497 14-62 (65)
267 PF10500 SR-25: Nuclear RNA-sp 27.8 89 0.0019 28.3 4.0 7 213-219 175-181 (225)
268 PF14893 PNMA: PNMA 27.4 50 0.0011 32.3 2.6 76 292-373 16-96 (331)
269 PRK12678 transcription termina 26.8 1.2E+02 0.0027 32.2 5.4 12 187-198 324-335 (672)
270 PF10567 Nab6_mRNP_bdg: RNA-re 26.5 1.9E+02 0.0041 27.5 6.0 66 445-510 31-106 (309)
271 PRK08559 nusG transcription an 25.3 1.9E+02 0.0042 24.6 5.6 48 442-497 21-69 (153)
272 PF08734 GYD: GYD domain; Int 25.1 3.2E+02 0.0069 20.9 6.3 49 441-496 20-69 (91)
273 KOG1295 Nonsense-mediated deca 24.8 73 0.0016 31.4 3.2 68 294-361 7-77 (376)
274 PF08442 ATP-grasp_2: ATP-gras 24.7 91 0.002 28.1 3.6 69 445-519 29-107 (202)
275 TIGR00082 rbfA ribosome-bindin 24.6 54 0.0012 26.4 2.0 56 453-515 32-93 (114)
276 PRK13815 ribosome-binding fact 23.4 90 0.0019 25.6 3.1 56 453-515 31-92 (122)
277 KOG1134 Uncharacterized conser 23.4 95 0.0021 34.1 4.1 41 474-514 305-345 (728)
278 KOG1924 RhoA GTPase effector D 23.1 1.5E+02 0.0033 32.2 5.2 60 115-184 538-597 (1102)
279 KOG4365 Uncharacterized conser 22.8 24 0.00052 35.0 -0.4 65 444-512 18-82 (572)
280 KOG4008 rRNA processing protei 22.2 71 0.0015 29.1 2.4 30 295-324 41-70 (261)
281 PTZ00191 60S ribosomal protein 22.0 4E+02 0.0086 22.6 6.5 57 296-355 83-141 (145)
282 PRK14548 50S ribosomal protein 20.6 3.1E+02 0.0066 20.8 5.1 44 445-494 36-81 (84)
283 PF09341 Pcc1: Transcription f 20.1 1.8E+02 0.0039 21.3 3.9 38 475-512 3-52 (76)
No 1
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.8e-61 Score=502.81 Aligned_cols=396 Identities=44% Similarity=0.686 Sum_probs=292.0
Q ss_pred CCCCCCCCCCccCCCCCCC----CCCCCCCCCCCCCccccCCCCcCCCcCCCCCCCCccccchhhhccCCeEEEeCCCcc
Q 009954 110 RRSGFDMAPPAAAMLPGAA----VPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPPL 185 (521)
Q Consensus 110 ~~~~~d~~~~~~~~~~~~~----~~g~~p~~~p~~p~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~v~nlp~~ 185 (521)
....|+.+++++....+.+ ....+|+.++ .|++.+...... ....+..++.....++.....++|||+|||+.
T Consensus 110 ~~~~~d~~p~~~~~~~~~~~~~~~~~~~p~~~~-~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~lyVgnLp~~ 186 (509)
T TIGR01642 110 KRSLWDIKPPGYELVTADQAKASQVFSVPGTAP-RPAMTDPEKLLA--EGSIITPLPVLPYQQQATRQARRLYVGGIPPE 186 (509)
T ss_pred cccccccCCCcccccchHHHhhccccCCCCCCC-CCCCCCcccccc--cccccCCccccccCccCCccccEEEEeCCCCC
Confidence 4556888888776655432 1113333222 222222221111 11111122222345567778899999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEEEeCCCCCCccccc
Q 009954 186 ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPTLAA 265 (521)
Q Consensus 186 ~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~v~~~~~~~~~~~~ 265 (521)
+|+++|.++|..++...+.....++.+|..+.+..++|||||+|.+.++|..||+|+|+.|.|+.|+|.++..+.+....
T Consensus 187 ~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~ 266 (509)
T TIGR01642 187 FVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQI 266 (509)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCcccc
Confidence 99999999999998877765555567799999999999999999999999999999999999999999988877643322
Q ss_pred cCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcC
Q 009954 266 ALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD 345 (521)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 345 (521)
........+....................++|||+|||..+++++|.++|+.||.|..+.|+.+..+|.++|||||+|.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 346 (509)
T TIGR01642 267 TPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKD 346 (509)
T ss_pred CCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECC
Confidence 21111111111111111111222234566899999999999999999999999999999999998899999999999999
Q ss_pred hHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEee
Q 009954 346 PAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLT 425 (521)
Q Consensus 346 ~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 425 (521)
.++|..||+.|+|..|+|+.|.|.++................ . .... ..............++.|++|.
T Consensus 347 ~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~-----~---~~~~---~~~~~~~~~~~~~~~s~v~~l~ 415 (509)
T TIGR01642 347 PSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMA-----P---VTLL---AKALSQSILQIGGKPTKVVQLT 415 (509)
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccc-----c---cccc---cccchhhhccccCCCceEEEec
Confidence 999999999999999999999999997533221110000000 0 0000 0000000111223678999999
Q ss_pred CcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEE
Q 009954 426 EAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVN 505 (521)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~ 505 (521)
|+++.++|.++.+|++|.++|+++|++||.|+.|.|+++..++....|+|+|||+|.++++|++||..|||+.|+|++|.
T Consensus 416 N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~ 495 (509)
T TIGR01642 416 NLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVV 495 (509)
T ss_pred cCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 99999999999999999999999999999999999998765555567889999999999999999999999999999999
Q ss_pred EEEcCCCCcccccC
Q 009954 506 AFYYPEDKYFNKDY 519 (521)
Q Consensus 506 v~~~~~~~~~~~~~ 519 (521)
|.|+++++|.+|.|
T Consensus 496 ~~~~~~~~~~~~~~ 509 (509)
T TIGR01642 496 AAFYGEDCYKAGDY 509 (509)
T ss_pred EEEeCHHHhhccCC
Confidence 99999999999988
No 2
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.3e-52 Score=427.80 Aligned_cols=316 Identities=26% Similarity=0.423 Sum_probs=236.9
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
....++|||+|||..+++++|+++|.+||.|.... .+.+..++.++|||||+|.+.++|.+||.|+|..+.|++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~------i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~ 159 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQ------CIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRP 159 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCee
Confidence 34567999999999999999999999999753321 133333466789999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 330 (521)
|.|.++........... ..........++|||+|||..+++++|.++|++||.|..|.|+.++
T Consensus 160 i~v~~~~~~~~~~~~~~-----------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 160 IIVQSSQAEKNRAAKAA-----------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred eEEeecchhhhhhhhcc-----------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 99986543221110000 0000011225789999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHH------------HHHHHHHHHHHHh
Q 009954 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESIL------------AQAQQHIAIQKMA 398 (521)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 398 (521)
.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+.............. .............
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLD 302 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhc
Confidence 8999999999999999999999999999999999999999864211111000000 0000000000000
Q ss_pred hhcc--CC-----------------------CCC-----CC--------CCCC-CCCCcceEEEeeCcCCcccCCChHHH
Q 009954 399 LQTS--GM-----------------------NTL-----GG--------GMSL-FGETLAKVLCLTEAITADALADDEEY 439 (521)
Q Consensus 399 ~~~~--~~-----------------------~~~-----~~--------~~~~-~~~~~~~v~~l~~~~~~~~~~~~~~~ 439 (521)
.... +. ..+ +. .++. ....++.|++|.|+++..++.+..+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 303 RDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred cCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 0000 00 000 00 0000 12367889999999999988889999
Q ss_pred HHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCccc
Q 009954 440 EEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 516 (521)
Q Consensus 440 ~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~~ 516 (521)
+++++||+++|++||.|+.|.|.... +.|+|||+|.++++|.+|++.|||+.|+|+.|.|.|+++++|.+
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~~-------~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~ 452 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTKN-------SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDM 452 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCCC-------CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHh
Confidence 99999999999999999999997533 24889999999999999999999999999999999999999865
No 3
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-47 Score=373.60 Aligned_cols=387 Identities=46% Similarity=0.763 Sum_probs=313.2
Q ss_pred CCCCCCCCCCCCCCCCCCCccCCCCCC--------CCCCCCCCCCCCCCccccCCCCcCCCcCCCCCCCCccccchhhhc
Q 009954 101 PSRSPSKSKRRSGFDMAPPAAAMLPGA--------AVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATR 172 (521)
Q Consensus 101 rs~s~~r~r~~~~~d~~~~~~~~~~~~--------~~~g~~p~~~p~~p~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~ 172 (521)
+++++...+....|+.++++++..++. +..|+.|+........ ...+..|.+.+.++...
T Consensus 106 ~~~~~~~~r~~~~~~~~~~~fe~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~t~ 173 (500)
T KOG0120|consen 106 RSRSRRYSRKRSLWDVPPEGFETITPDGAKLYKNFNATGQVPGDLSNPKKS------------LKLPQLPTPPMDSQATR 173 (500)
T ss_pred cccccccccchhhhcCCCCCCcccCchhhhhhhhccccCCCCCCccccccc------------cccccCCCCccCcchhh
Confidence 344444466677899999988887762 1333333322111110 00334455566677888
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~ 252 (521)
....++|+++|+.++++.+..+|..-..+.+++....+..++.+.++..+.|||++|.+.++|..|+.+++..+.|.+++
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~ 253 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLK 253 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCCce
Confidence 88999999999999999999999999888888887778899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 332 (521)
+..+..+...........+ .+..+...........++.+||++||..+++..+.++...||.+....++.+..+
T Consensus 254 ~~r~~d~~~~p~~~~~~~~------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 254 IRRPHDYQPVPGITLSPSQ------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred ecccccccCCccchhhhcc------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 9998888776655544433 2233444455556677889999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMS 412 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (521)
|.++||||.+|.++.....|+..|||..+++..|.|+.+...........+ ..+.+...+.....+
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~--~~~~~~~~i~~~~~q------------ 393 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN--ISQSQVPGIPLLMTQ------------ 393 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC--ccccccccchhhhcc------------
Confidence 999999999999999999999999999999999999998763221111111 000011122222111
Q ss_pred CCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHH
Q 009954 413 LFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKN 492 (521)
Q Consensus 413 ~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~ 492 (521)
....++.|++|.|++++++|.++++|++|.++|+..|.+||.|..|.|+++..++.+..|.|++||+|++.++|++|++
T Consensus 394 -~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~ 472 (500)
T KOG0120|consen 394 -MAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAME 472 (500)
T ss_pred -cCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHH
Confidence 2338899999999999999999999999999999999999999999999996688889999999999999999999999
Q ss_pred HHhCCeeCCcEEEEEEcCCCCcccccCC
Q 009954 493 ALSGRKFGGNTVNAFYYPEDKYFNKDYS 520 (521)
Q Consensus 493 ~lng~~~~gr~l~v~~~~~~~~~~~~~~ 520 (521)
.|+|++|+||+|.++||++++|++++|.
T Consensus 473 ~L~GrKF~nRtVvtsYydeDkY~~r~~~ 500 (500)
T KOG0120|consen 473 ELTGRKFANRTVVASYYDEDKYHAREFE 500 (500)
T ss_pred HccCceeCCcEEEEEecCHHHhhccccC
Confidence 9999999999999999999999999984
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.7e-42 Score=351.17 Aligned_cols=322 Identities=27% Similarity=0.390 Sum_probs=237.4
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....++|||+|||+.+++++|+++|.+||.|..+. .+.+..+++++|||||+|.+.++|..|+ .|||..|.|+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~------I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR 177 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSIN------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 177 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEE------EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc
Confidence 35678999999999999999999999999864422 1334446778999999999999999999 6999999999
Q ss_pred eEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 009954 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (521)
Q Consensus 250 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 329 (521)
.|+|.++....... +. .. .........++|||+|||+.+++++|+++|+.||.|.+++|.++
T Consensus 178 ~IkV~rp~~~p~a~--------~~--~~--------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D 239 (612)
T TIGR01645 178 NIKVGRPSNMPQAQ--------PI--ID--------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA 239 (612)
T ss_pred eeeecccccccccc--------cc--cc--------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec
Confidence 99998654322110 00 00 00011223468999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCc---------hHHHHH---HHHH--HHHHHH-
Q 009954 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSK---------TEQESI---LAQA--QQHIAI- 394 (521)
Q Consensus 330 ~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~---------~~~~~~---~~~~--~~~~~~- 394 (521)
+.+|.++|||||+|.+.++|.+||+.|||+.|+|+.|+|.++....... +..... ...+ +.....
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~pa~~~~~p~aaa~Aaaaa~a~~~a~~~~~ 319 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVA 319 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCCCCCCCCCchHHHHHHHHhhhhhhhhhhhh
Confidence 9899999999999999999999999999999999999999987522221 000000 0000 000000
Q ss_pred HHHhhh---------------------------------------------------ccCCCCCCCC-----------CC
Q 009954 395 QKMALQ---------------------------------------------------TSGMNTLGGG-----------MS 412 (521)
Q Consensus 395 ~~~~~~---------------------------------------------------~~~~~~~~~~-----------~~ 412 (521)
...... ..+...+|.. .|
T Consensus 320 ~~a~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (612)
T TIGR01645 320 GAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAPPGLVAP 399 (612)
T ss_pred cccccccccCCCccccccccccccccccccccCCcccCCCCCccccccccCCCCcccccCCCCccccccccCCCccccCC
Confidence 000000 0000000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 009954 413 -------------------------------------------------------------------------------- 412 (521)
Q Consensus 413 -------------------------------------------------------------------------------- 412 (521)
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (612)
T TIGR01645 400 TEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEKEGEELQPKLV 479 (612)
T ss_pred CcCchhhhcCcccccccccccccccccccchhccccchhhhhhhhhhhcccchhhHHHHhhhhhHHhhhhhhhhhccccc
Confidence
Q ss_pred ----------------------------CCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCC
Q 009954 413 ----------------------------LFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRP 464 (521)
Q Consensus 413 ----------------------------~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~ 464 (521)
...+.+++|++|.|+++.+++ .++|++||++.|++||.|.+|.|...
T Consensus 480 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~rp~~S~vVvL~NMv~~~el-----dedl~eDV~eEC~K~G~V~~v~I~~~ 554 (612)
T TIGR01645 480 MNSEDASLASQEGMSIRGNSARHLVMQKLMRTNRSNVIVLRNMVTPQDI-----DEFLEGEIREECGKFGVVDRVIINFE 554 (612)
T ss_pred ccccccccccccccccccchhhHHHHHhhcCCCCCCEEEEeCCCChHHh-----HHHHHHHHHHHhhcCceeEEEEEecC
Confidence 001235789999999998865 34588999999999999999999885
Q ss_pred CCC-CCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcccccCCC
Q 009954 465 DQN-GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 521 (521)
Q Consensus 465 ~~~-~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~~~~~~~ 521 (521)
... .....+.|.+||+|.+.++|.+|+..|||++|+||.|.+.||++++|.+|+|+.
T Consensus 555 ~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~f~~~~l~~ 612 (612)
T TIGR01645 555 KQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQILFDHADLSG 612 (612)
T ss_pred CCCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHHhhccccCC
Confidence 422 111123567899999999999999999999999999999999999999999984
No 5
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=6.8e-43 Score=335.11 Aligned_cols=317 Identities=26% Similarity=0.412 Sum_probs=239.6
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCc
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 249 (521)
.+...++||+--|+..+++-+|.+||+.+|+|.. +.+|.+-+...++|.|||+|.+.+....|+.|.|+.+.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrd------VriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~ 248 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRD------VRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGV 248 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcce------eEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCc
Confidence 4566789999999999999999999999998643 3345566667789999999999999999999999999999
Q ss_pred eEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCC-CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 009954 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGP-DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (521)
Q Consensus 250 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 328 (521)
+|.|+........ .+... ..........+ ..|||+||..++++++|+.+|++||.|..|.+..
T Consensus 249 pv~vq~sEaeknr-~a~~s---------------~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~ 312 (549)
T KOG0147|consen 249 PVIVQLSEAEKNR-AANAS---------------PALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTK 312 (549)
T ss_pred eeEecccHHHHHH-HHhcc---------------ccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeecc
Confidence 9999863322111 10000 00000111222 2399999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchH------HH----HHHH--HHHHHHHHHH
Q 009954 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTE------QE----SILA--QAQQHIAIQK 396 (521)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~------~~----~~~~--~~~~~~~~~~ 396 (521)
+.+||.++||+||+|.+.++|.+|+..|||+.|.|+.|+|...+........ .+ ..+. .......+.+
T Consensus 313 d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~k 392 (549)
T KOG0147|consen 313 DSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAK 392 (549)
T ss_pred ccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHH
Confidence 9889999999999999999999999999999999999999876652111100 00 0000 0000000011
Q ss_pred Hhhhc------------------------cCCCCC-----CCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHH
Q 009954 397 MALQT------------------------SGMNTL-----GGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMR 447 (521)
Q Consensus 397 ~~~~~------------------------~~~~~~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~ 447 (521)
++... .+.+.. ..+.|.. ..++.|+.|.|++++.+.....|-.+|++||.
T Consensus 393 la~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~-~i~t~C~lL~nMFdpstete~n~d~eI~edV~ 471 (549)
T KOG0147|consen 393 LAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF-DIPTQCLLLSNMFDPSTETEPNWDQEIREDVI 471 (549)
T ss_pred HhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc-CCccHHHHHhhcCCcccccCcchhhHHHHHHH
Confidence 11000 100000 0011111 27888999999999999888889999999999
Q ss_pred HhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcccc
Q 009954 448 EECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNK 517 (521)
Q Consensus 448 ~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~~~ 517 (521)
+.|++||.|..|.|.++. .||+||.|.+++.|..|+.+|||+.|.|+.|++.|++...|+..
T Consensus 472 Eec~k~g~v~hi~vd~ns--------~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~ 533 (549)
T KOG0147|consen 472 EECGKHGKVCHIFVDKNS--------AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSK 533 (549)
T ss_pred HHHHhcCCeeEEEEccCC--------CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhh
Confidence 999999999999998865 38999999999999999999999999999999999999888753
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.6e-41 Score=338.34 Aligned_cols=292 Identities=20% Similarity=0.273 Sum_probs=212.8
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~ 252 (521)
..+|||+|||..+|+++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .|||..|.|+.|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~------i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~ 76 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCK------LVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIK 76 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEE------EEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEE
Confidence 56899999999999999999999999864321 1333344668899999999999999999 6999999999999
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 332 (521)
|.++..... .....+|||+|||..+++++|.++|++||.|..+.++.+..+
T Consensus 77 v~~a~~~~~-----------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 127 (352)
T TIGR01661 77 VSYARPSSD-----------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVT 127 (352)
T ss_pred EEeeccccc-----------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCC
Confidence 987543211 112357999999999999999999999999999999998888
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeCC--eEEEEEEccCCCCCchHHHHHHHHHHHH-H-----------------
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASGQSKTEQESILAQAQQH-I----------------- 392 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~~~~~~~~~~~~~~~~~~-~----------------- 392 (521)
+.++|||||+|.+.++|+.||+.|||..+.| ..|.|.|+....+............... .
T Consensus 128 ~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T TIGR01661 128 GLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGP 207 (352)
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCC
Confidence 9999999999999999999999999998877 6789999865332211100000000000 0
Q ss_pred ---------------------HHHHH-hhhcc--CCCC------------CCCCCCCCCCCcceEEEeeCcCCcccCCCh
Q 009954 393 ---------------------AIQKM-ALQTS--GMNT------------LGGGMSLFGETLAKVLCLTEAITADALADD 436 (521)
Q Consensus 393 ---------------------~~~~~-~~~~~--~~~~------------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 436 (521)
..+.. ..... .... .+...+.. .....+|.+.|+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lfV~NL~~------- 279 (352)
T TIGR01661 208 MHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAAS-DGAGYCIFVYNLSP------- 279 (352)
T ss_pred ccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCC-CCCCcEEEEeCCCC-------
Confidence 00000 00000 0000 00000000 11111233333322
Q ss_pred HHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 437 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 437 ~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
.+.+++|+++|++||.|+.|+|+.+..++.. +|+|||+|.+.++|..||+.|||..|+|+.|+|.|++...+
T Consensus 280 ---~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~s---kG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 280 ---DTDETVLWQLFGPFGAVQNVKIIRDLTTNQC---KGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred ---CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCc---cceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 2233699999999999999999999877664 67889999999999999999999999999999999987643
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.5e-36 Score=315.64 Aligned_cols=273 Identities=20% Similarity=0.319 Sum_probs=209.7
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~ 252 (521)
..+|||+|||.++++++|+++|+.||.|..+. +.....+.++|||||+|.+.++|.+|+ .+||..+.|+.|.
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~-------i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCK-------VATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeE-------eeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 45799999999999999999999999875432 222234567999999999999999999 7999999999999
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 332 (521)
|.......... .......++|||+|||.++|+++|+++|+.||.|.++.++.+. +
T Consensus 161 v~~~~~~~~~~------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~ 215 (562)
T TIGR01628 161 VGRFIKKHERE------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-S 215 (562)
T ss_pred Eeccccccccc------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-C
Confidence 97543322110 0012334689999999999999999999999999999999984 7
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeC----CeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMG----DKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 408 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~----g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (521)
|.++|||||+|.+.++|.+|++.|+|..|. |+.|.|.++..+.. ...................
T Consensus 216 g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e----r~~~~~~~~~~~~~~~~~~--------- 282 (562)
T TIGR01628 216 GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE----REAELRRKFEELQQERKMK--------- 282 (562)
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh----hHHHHHhhHHhhhhhhhcc---------
Confidence 999999999999999999999999999999 99999999865322 1111111111100000000
Q ss_pred CCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHH
Q 009954 409 GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCA 488 (521)
Q Consensus 409 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~ 488 (521)
....+..|-+|...++. ++|+++|+.||.|..|+|+.+. ++.. +|+|||+|.+.++|.
T Consensus 283 -----~~~~~l~V~nl~~~~~~-------------~~L~~~F~~~G~i~~~~i~~d~-~g~~---~g~gfV~f~~~~~A~ 340 (562)
T TIGR01628 283 -----AQGVNLYVKNLDDTVTD-------------EKLRELFSECGEITSAKVMLDE-KGVS---RGFGFVCFSNPEEAN 340 (562)
T ss_pred -----cCCCEEEEeCCCCccCH-------------HHHHHHHHhcCCeEEEEEEECC-CCCc---CCeEEEEeCCHHHHH
Confidence 00122333333333332 5999999999999999999984 4443 578899999999999
Q ss_pred HHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 489 TAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 489 ~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
+|+..|||..|+|++|.|.++..++
T Consensus 341 ~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 341 RAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHHHhcCCeeCCceeEEEeccCcH
Confidence 9999999999999999999987653
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.8e-36 Score=259.19 Aligned_cols=292 Identities=18% Similarity=0.253 Sum_probs=221.1
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
+....|.|.-||..+|+++|+.+|...|+|.+|++ |.+..++.+.||+||.|.++++|++|+ .|||..+..+.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKL------vRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKL------VRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeee------eeccccccccccceeeecChHHHHHHHhhhcceeeccce
Confidence 44557999999999999999999999999988766 888889999999999999999999999 79999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 330 (521)
|+|.++.+.... ...-+|||.+||..+|..+|.++|++||.|..-+|..|.
T Consensus 113 IKVSyARPSs~~-----------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 113 IKVSYARPSSDS-----------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred EEEEeccCChhh-----------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 999986543321 122479999999999999999999999999988888888
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC--eEEEEEEccCCCCCchHHHHHHHHHHH--------HHHHHHH---
Q 009954 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASGQSKTEQESILAQAQQ--------HIAIQKM--- 397 (521)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--- 397 (521)
.+|.++|.+||.|...++|+.||+.|||..-.| .+|.|.|+....+......-..-.... ..+.+..
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~ 243 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLD 243 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccc
Confidence 899999999999999999999999999988766 579999998744433221111000000 0000000
Q ss_pred --------hhhccCCCC------CCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecC
Q 009954 398 --------ALQTSGMNT------LGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPR 463 (521)
Q Consensus 398 --------~~~~~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~ 463 (521)
.....++.. .|...|..+.. .-|+.+.|+....+. .-|-++|.+||.|.+|+|++
T Consensus 244 ~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~-g~ciFvYNLspd~de----------~~LWQlFgpFGAv~nVKvir 312 (360)
T KOG0145|consen 244 NLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG-GWCIFVYNLSPDADE----------SILWQLFGPFGAVTNVKVIR 312 (360)
T ss_pred cccchhhhhccCCCccccccceeeeeccCCCCCC-eeEEEEEecCCCchH----------hHHHHHhCcccceeeEEEEe
Confidence 000011110 12222222222 234444444333321 37889999999999999999
Q ss_pred CCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 464 PDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 464 ~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
|..+.. .+|++||.+.+-++|..||..|||..++++.|.|+|-+.+
T Consensus 313 D~ttnk---CKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 313 DFTTNK---CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCccc---ccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 985543 3566699999999999999999999999999999997654
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3.1e-36 Score=305.47 Aligned_cols=243 Identities=19% Similarity=0.299 Sum_probs=191.5
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec-Cce
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE-GVA 250 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~-g~~ 250 (521)
..++|||+|||.++++++|+++|.+||.|..+. .+.+ ..+.++|||||+|.+.++|++|| .||+..+. |+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vr------l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~ 129 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELR------LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL 129 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEE------EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc
Confidence 357899999999999999999999999865431 1333 55788999999999999999999 69998885 777
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEe-e
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLV-K 328 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~v~i~-~ 328 (521)
|.|.++ ...++|||+|||..+++++|.++|++++. +..+.+. .
T Consensus 130 l~V~~S-----------------------------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~ 174 (578)
T TIGR01648 130 LGVCIS-----------------------------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS 174 (578)
T ss_pred cccccc-----------------------------------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc
Confidence 777542 11368999999999999999999999864 4444443 3
Q ss_pred cCCCCCcceEEEEEEcChHHHHHHHHHHcC--CeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 009954 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 406 (521)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (521)
...+++++|||||+|.+.++|.+|++.|+. ..+.|+.|.|.|+.+......+
T Consensus 175 ~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~-------------------------- 228 (578)
T TIGR01648 175 AADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED-------------------------- 228 (578)
T ss_pred ccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc--------------------------
Confidence 334678899999999999999999998864 4688999999999763221100
Q ss_pred CCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccc--cceeEEEecCCCCCCCCCCCccEEEEEecCH
Q 009954 407 LGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY--GTLVNVVIPRPDQNGGETPGVGKVFLEYYDA 484 (521)
Q Consensus 407 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~f--G~I~~v~i~~~~~~~~~~~g~g~afV~F~~~ 484 (521)
.....++|.+.|+... ..+++|+++|+.| |.|+.|.+++ ++|||+|.+.
T Consensus 229 --------~~~~~k~LfVgNL~~~----------~tee~L~~~F~~f~~G~I~rV~~~r-----------gfAFVeF~s~ 279 (578)
T TIGR01648 229 --------VMAKVKILYVRNLMTT----------TTEEIIEKSFSEFKPGKVERVKKIR-----------DYAFVHFEDR 279 (578)
T ss_pred --------ccccccEEEEeCCCCC----------CCHHHHHHHHHhcCCCceEEEEeec-----------CeEEEEeCCH
Confidence 0012234444444221 1225999999999 9999998865 5889999999
Q ss_pred HHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 485 VGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 485 ~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
++|++||+.|||..|+|+.|+|.|+...
T Consensus 280 e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 280 EDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 9999999999999999999999998664
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6.2e-36 Score=315.28 Aligned_cols=254 Identities=19% Similarity=0.340 Sum_probs=201.0
Q ss_pred eEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEEe
Q 009954 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (521)
Q Consensus 176 ~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v~ 254 (521)
+|||+|||+++|+++|.++|++||.|..+ ..+.+..+.+++|||||+|.+.++|.+|+ .+|+..|.|+.|+|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v------~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSV------RVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 69999999999999999999999985331 11223334667899999999999999999 799999999999999
Q ss_pred CCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC
Q 009954 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334 (521)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~ 334 (521)
|+...... ......+|||+|||.++++++|+++|+.||.|.+|+|..+. +|.
T Consensus 76 ~s~~~~~~---------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~ 127 (562)
T TIGR01628 76 WSQRDPSL---------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGK 127 (562)
T ss_pred cccccccc---------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCC
Confidence 85421100 01123579999999999999999999999999999999884 889
Q ss_pred cceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009954 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLF 414 (521)
Q Consensus 335 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (521)
++|||||+|.+.++|.+|++.|+|..+.|+.|.|.......... . ....
T Consensus 128 skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~----~---------------------------~~~~ 176 (562)
T TIGR01628 128 SRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE----A---------------------------APLK 176 (562)
T ss_pred cccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc----c---------------------------cccc
Confidence 99999999999999999999999999999999998764321110 0 0000
Q ss_pred CCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHH
Q 009954 415 GETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL 494 (521)
Q Consensus 415 ~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~l 494 (521)
..++..|.+|...++ +++|+++|+.||.|..|.|+.+. ++. .+|+|||+|.+.++|.+|++.|
T Consensus 177 ~~~~l~V~nl~~~~t-------------ee~L~~~F~~fG~i~~~~i~~~~-~g~---~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 177 KFTNLYVKNLDPSVN-------------EDKLRELFAKFGEITSAAVMKDG-SGR---SRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred CCCeEEEeCCCCcCC-------------HHHHHHHHHhcCCEEEEEEEECC-CCC---cccEEEEEECCHHHHHHHHHHh
Confidence 002222223332222 25999999999999999999886 333 3578899999999999999999
Q ss_pred hCCeeC----CcEEEEEEcCC
Q 009954 495 SGRKFG----GNTVNAFYYPE 511 (521)
Q Consensus 495 ng~~~~----gr~l~v~~~~~ 511 (521)
||..|. |+.|.|.++..
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~ 260 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQK 260 (562)
T ss_pred CCcEecccccceeeEeecccC
Confidence 999999 99999988644
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=276.27 Aligned_cols=245 Identities=18% Similarity=0.317 Sum_probs=204.1
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCcee-cCc
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF-EGV 249 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g~ 249 (521)
..-+.||||.||.++.|++|.-+|.+.|+|...- .+.+...+.++|||||+|.+.++|+.|+ .||+..| .|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR------LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR------LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEE------EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 3457899999999999999999999999975432 2455566788999999999999999999 7999987 578
Q ss_pred eEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEee
Q 009954 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVK 328 (521)
Q Consensus 250 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~v~i~~ 328 (521)
.|.|.-+ ...++|||+|||.+.++++|.+.|++.++ |.+|.|..
T Consensus 155 ~igvc~S-----------------------------------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~ 199 (506)
T KOG0117|consen 155 LLGVCVS-----------------------------------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYP 199 (506)
T ss_pred EeEEEEe-----------------------------------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEec
Confidence 8888642 22368999999999999999999999987 88998887
Q ss_pred cCC-CCCcceEEEEEEcChHHHHHHHHHHcC--CeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCC
Q 009954 329 DRD-TGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMN 405 (521)
Q Consensus 329 ~~~-~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (521)
.+. ..+++|||||+|.+...|..|...|-. +++.|..+.|.||.+...+..+ .
T Consensus 200 ~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded--~---------------------- 255 (506)
T KOG0117|consen 200 SPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED--T---------------------- 255 (506)
T ss_pred CccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh--h----------------------
Confidence 664 567899999999999999999887753 6789999999999874333222 1
Q ss_pred CCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHH
Q 009954 406 TLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAV 485 (521)
Q Consensus 406 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~ 485 (521)
....+|+.+.|+.. .++++.|+++|+.||.|+.|+.++| +|||.|.+.+
T Consensus 256 ----------ms~VKvLYVRNL~~----------~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~ 304 (506)
T KOG0117|consen 256 ----------MSKVKVLYVRNLME----------STTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAERE 304 (506)
T ss_pred ----------hhheeeeeeeccch----------hhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchH
Confidence 13456666666532 3456799999999999999999986 7799999999
Q ss_pred HHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 486 GCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 486 ~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
+|.+|++.|||..|+|..|.|+++.+-
T Consensus 305 davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 305 DAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred HHHHHHHHhcCceecCceEEEEecCCh
Confidence 999999999999999999999997653
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.8e-35 Score=299.80 Aligned_cols=289 Identities=18% Similarity=0.138 Sum_probs=203.3
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHH---ccCceecCce
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA---LDGIIFEGVA 250 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~---l~g~~~~g~~ 250 (521)
++.|||+|||+.+|+++|+++|++||. |..+.+..+++||||+|.+.++|+.|+. +++..+.|++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~------------V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~ 69 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGP------------VSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQP 69 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCC------------eeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeE
Confidence 578999999999999999999999998 6667777789999999999999999994 5889999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 330 (521)
|.|+++......... .. . ..........+|+|.||+..+++++|+++|+.||.|..|.|+++.
T Consensus 70 l~v~~s~~~~~~~~~---~~----~----------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~ 132 (481)
T TIGR01649 70 AFFNYSTSQEIKRDG---NS----D----------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN 132 (481)
T ss_pred EEEEecCCcccccCC---CC----c----------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC
Confidence 999987543211000 00 0 000112233579999999999999999999999999999998763
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC--eEEEEEEccCCCCCc------h----------HHHHHHHH--HHH
Q 009954 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASGQSK------T----------EQESILAQ--AQQ 390 (521)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~~~~~------~----------~~~~~~~~--~~~ 390 (521)
. +|+|||+|.+.++|.+|++.|||..|.| +.|+|.|++...... . +.+..+.. ...
T Consensus 133 ~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~ 208 (481)
T TIGR01649 133 N----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQR 208 (481)
T ss_pred C----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCcccccc
Confidence 2 4789999999999999999999999854 689999987622110 0 00000000 000
Q ss_pred HHHHHH------Hhhhcc-----------CCCC---------CC-----CCCC-------CCCCCcceEEEeeCcCCccc
Q 009954 391 HIAIQK------MALQTS-----------GMNT---------LG-----GGMS-------LFGETLAKVLCLTEAITADA 432 (521)
Q Consensus 391 ~~~~~~------~~~~~~-----------~~~~---------~~-----~~~~-------~~~~~~~~v~~l~~~~~~~~ 432 (521)
...... ...... +..+ .. .+.+ .....++.++.+.|+....
T Consensus 209 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~- 287 (481)
T TIGR01649 209 QPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEK- 287 (481)
T ss_pred ccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCC-
Confidence 000000 000000 0000 00 0000 0011244566666553210
Q ss_pred CCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 433 LADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 433 ~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
.++++|+++|+.||.|..|+|+++. .|+|||+|.++++|..||..|||..|.|++|+|.+....
T Consensus 288 --------vt~~~L~~lF~~yG~V~~vki~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 288 --------VNCDRLFNLFCVYGNVERVKFMKNK--------KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --------CCHHHHHHHHHhcCCeEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 1226999999999999999999864 378899999999999999999999999999999997543
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-35 Score=257.79 Aligned_cols=236 Identities=23% Similarity=0.361 Sum_probs=181.3
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
+...++|||+||...+||+-|..+|++.|.+..+ ++ .|. .
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~------------k~---------i~~-------------------e 42 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKT------------KV---------IFD-------------------E 42 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccc------------ee---------ehh-------------------h
Confidence 3457899999999999999999999999985432 21 121 4
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 330 (521)
|+|.|+.... .++.+. ......|||+.|.+.++.++|++.|.+||.|.+++|++|.
T Consensus 43 ~~v~wa~~p~---------nQsk~t---------------~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 43 LKVNWATAPG---------NQSKPT---------------SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred hccccccCcc---------cCCCCc---------------cccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 5555543210 111111 1223469999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 009954 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGG 410 (521)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (521)
.|+++|||+||.|-+.++|+.||..|||.+|++|.|+-.|++.+....-... .....+..+
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~---------ltfdeV~NQ---------- 159 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKP---------LTFDEVYNQ---------- 159 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCC---------ccHHHHhcc----------
Confidence 9999999999999999999999999999999999999999987541111000 111112222
Q ss_pred CCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHH
Q 009954 411 MSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATA 490 (521)
Q Consensus 411 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~A 490 (521)
.++.++.|+|-....-+. +++|++.|++||.|..|+|.++. |+|||+|.+.|.|..|
T Consensus 160 ---ssp~NtsVY~G~I~~~lt-----------e~~mr~~Fs~fG~I~EVRvFk~q---------GYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 160 ---SSPDNTSVYVGNIASGLT-----------EDLMRQTFSPFGPIQEVRVFKDQ---------GYAFVRFETKEAAAHA 216 (321)
T ss_pred ---CCCCCceEEeCCcCcccc-----------HHHHHHhcccCCcceEEEEeccc---------ceEEEEecchhhHHHH
Confidence 223666666643332111 15899999999999999999986 9999999999999999
Q ss_pred HHHHhCCeeCCcEEEEEEcCCC
Q 009954 491 KNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 491 i~~lng~~~~gr~l~v~~~~~~ 512 (521)
|..|||..|+|+.|+|+|-.+.
T Consensus 217 Iv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 217 IVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHhcCceeCceEEEEeccccC
Confidence 9999999999999999995543
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=275.26 Aligned_cols=323 Identities=16% Similarity=0.241 Sum_probs=223.8
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEE
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v 253 (521)
.||||++||+.++.++|.++|+.+|.|.+|++ |.+.....++||+||+|.-.+++++|+ ++++..|.|+.|.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~v------Vt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v 79 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVV------VTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNV 79 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEE------ecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccc
Confidence 58999999999999999999999999887643 444455678999999999999999999 79999999999999
Q ss_pred eCCCCCCccccccCCCCCCC-CCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 009954 254 RRPTDYNPTLAAALGPGQPS-PNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (521)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 332 (521)
..+...........+..... ..... ..+...-......+|.|+|||+.|...+|..+|+.||.|..|.|++....
T Consensus 80 ~~A~~R~r~e~~~~~e~~~veK~~~q----~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg 155 (678)
T KOG0127|consen 80 DPAKKRARSEEVEKGENKAVEKPIEQ----KRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG 155 (678)
T ss_pred ccccccccchhcccccchhhhccccc----CCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC
Confidence 98776655432211111000 00000 00000000122468999999999999999999999999999999988755
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHH---HHHHHHH-HHHH-HHhhhc------
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESI---LAQAQQH-IAIQ-KMALQT------ 401 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~---~~~~~~~-~~~~-~~~~~~------ 401 (521)
+.. |||||+|....+|.+||+.+||..|.|++|.|.||-++......+... +..+... .... ......
T Consensus 156 klc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed 234 (678)
T KOG0127|consen 156 KLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEED 234 (678)
T ss_pred Ccc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhc
Confidence 554 999999999999999999999999999999999998854433221110 0000000 0000 000000
Q ss_pred ----------cCCCCC----------------CC--CCCCCCCCcceEEEeeCcCC--cccCCChHHHHHHHHHHHHhhc
Q 009954 402 ----------SGMNTL----------------GG--GMSLFGETLAKVLCLTEAIT--ADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 402 ----------~~~~~~----------------~~--~~~~~~~~~~~v~~l~~~~~--~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
..+++- .. +....+........+....+ ..-+..|++|.++++.|.++|+
T Consensus 235 ~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs 314 (678)
T KOG0127|consen 235 GEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS 314 (678)
T ss_pred ccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHH
Confidence 000000 00 00000011111111111111 1223458889999999999999
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHH-----hC-CeeCCcEEEEEEcCC
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL-----SG-RKFGGNTVNAFYYPE 511 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~l-----ng-~~~~gr~l~v~~~~~ 511 (521)
+||+|..+.|+.++.++.+ .|+|||.|.+..+|..||+.. .| ..|.||.|+|..+-.
T Consensus 315 kFG~v~ya~iV~~k~T~~s---kGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 315 KFGEVKYAIIVKDKDTGHS---KGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred hhccceeEEEEeccCCCCc---ccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 9999999999999988876 689999999999999999976 24 789999999998644
No 15
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-34 Score=261.56 Aligned_cols=323 Identities=26% Similarity=0.397 Sum_probs=241.7
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
+..-.|.||||.|.+.+.|+.|+..|.+||.|++.+. ..+..+++++|||||+|+-+|.|+.|+ +|||.+++|
T Consensus 109 ALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInM------SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG 182 (544)
T KOG0124|consen 109 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINM------SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 182 (544)
T ss_pred HHHHhHheeeeeeEEEechHHHHhhccCCCCcceeec------ccccccccccceEEEEEeCcHHHHHHHHHhccccccC
Confidence 3456889999999999999999999999999865433 566668899999999999999999999 799999999
Q ss_pred ceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 009954 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 328 (521)
+.|+|.++..-... +|.... ........++|||..+.++.+|+||+..|+.||+|..|.+.+
T Consensus 183 RNiKVgrPsNmpQA--------QpiID~----------vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr 244 (544)
T KOG0124|consen 183 RNIKVGRPSNMPQA--------QPIIDM----------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR 244 (544)
T ss_pred ccccccCCCCCccc--------chHHHH----------HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeec
Confidence 99999976543221 111000 001123457899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCc--h------HHHHHHHHHHHHHHHHH--Hh
Q 009954 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSK--T------EQESILAQAQQHIAIQK--MA 398 (521)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~--~~ 398 (521)
++..+..+||+||+|.+..+...|+..||-+-++|..|+|..+....... + ........+.....+.. ..
T Consensus 245 ~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAv 324 (544)
T KOG0124|consen 245 APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAV 324 (544)
T ss_pred cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHh
Confidence 99889999999999999999999999999999999999998775411110 0 00001111111111111 01
Q ss_pred hhcc-----CCC-----------------------------------CC---------CCCCCC----------------
Q 009954 399 LQTS-----GMN-----------------------------------TL---------GGGMSL---------------- 413 (521)
Q Consensus 399 ~~~~-----~~~-----------------------------------~~---------~~~~~~---------------- 413 (521)
.... +.. .| |...|.
T Consensus 325 Ag~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeK 404 (544)
T KOG0124|consen 325 AGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEK 404 (544)
T ss_pred ccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhh
Confidence 0000 000 00 000000
Q ss_pred ------------------------------------CCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcccccee
Q 009954 414 ------------------------------------FGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLV 457 (521)
Q Consensus 414 ------------------------------------~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~ 457 (521)
.-...++|++|.|.++++++.+ +++.+|.+.|++||.|.
T Consensus 405 e~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe-----~LegEi~EECgKfG~V~ 479 (544)
T KOG0124|consen 405 EEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDE-----DLEGEITEECGKFGAVN 479 (544)
T ss_pred hHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhh-----HHHHHHHHHHhccccee
Confidence 0145678999999999998754 56679999999999999
Q ss_pred EEEecCCCCCCCCC-CCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcccccCCC
Q 009954 458 NVVIPRPDQNGGET-PGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 521 (521)
Q Consensus 458 ~v~i~~~~~~~~~~-~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~~~~~~~ 521 (521)
.|.|......++.- .=.-..||+|....++.+|.+.|+|++|+|++|....|+...|.+++|+.
T Consensus 480 rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~~Dlsg 544 (544)
T KOG0124|consen 480 RVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDNSDLSG 544 (544)
T ss_pred EEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhcccccccCC
Confidence 99998876443210 00234799999999999999999999999999999999999999999984
No 16
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.8e-33 Score=259.29 Aligned_cols=173 Identities=25% Similarity=0.384 Sum_probs=146.1
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccC-cee
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG-IIF 246 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g-~~~ 246 (521)
+.+.+.-++||+-||..++|.||+++|++||.+..+++ ++|..++.++|||||.|.+.++|.+|+ .|+. +.|
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl------~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl 102 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINL------IKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL 102 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEe------ecccccCcccceEEEEeccHHHHHHHHHHhhccccc
Confidence 34456678999999999999999999999999765443 788888899999999999999999999 6765 557
Q ss_pred cC--ceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 009954 247 EG--VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (521)
Q Consensus 247 ~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v 324 (521)
.| .+|.|+++...... ....++|||+-|+..++|.+|+++|++||.|++|
T Consensus 103 pG~~~pvqvk~Ad~E~er----------------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~ 154 (510)
T KOG0144|consen 103 PGMHHPVQVKYADGERER----------------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDC 154 (510)
T ss_pred CCCCcceeecccchhhhc----------------------------cccchhhhhhhccccccHHHHHHHHHhhCccchh
Confidence 77 67888875433221 1123689999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCC-eeCC--eEEEEEEccCCCC
Q 009954 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL-KMGD--KTLTVRRATASGQ 376 (521)
Q Consensus 325 ~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~-~~~g--~~l~v~~~~~~~~ 376 (521)
.|.++. .+.++|||||.|.+.|.|..||+.|||. .+.| .+|.|.|++.+..
T Consensus 155 ~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 155 YILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred hheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 999995 8999999999999999999999999994 4665 6799999988443
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.2e-32 Score=279.56 Aligned_cols=303 Identities=16% Similarity=0.164 Sum_probs=197.7
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC--CCCeEEEEecCHHHHHHHH-HccCceecC--
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH--EKKFAFVEMRTVEEASNAM-ALDGIIFEG-- 248 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~a~~A~-~l~g~~~~g-- 248 (521)
..+|||+||++.+|+++|+++|+.||.| ..+.+.. ..++|||+|.+.++|.+|+ .|||..|.+
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V------------~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~ 163 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKV------------LRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGC 163 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCE------------EEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCc
Confidence 3479999999999999999999999984 4444333 3469999999999999999 699999965
Q ss_pred ceEEEeCCCCCCcc------cc-----ccC-CC-----------CCCCC---------Ccccccc---------------
Q 009954 249 VAVRVRRPTDYNPT------LA-----AAL-GP-----------GQPSP---------NLNLAAV--------------- 281 (521)
Q Consensus 249 ~~i~v~~~~~~~~~------~~-----~~~-~~-----------~~~~~---------~~~~~~~--------------- 281 (521)
+.|+|.|++...-. .. ..+ +. ..+.. ....+..
T Consensus 164 ~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 243 (481)
T TIGR01649 164 CTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGP 243 (481)
T ss_pred eEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCC
Confidence 47888776531110 00 000 00 00000 0000000
Q ss_pred ----------cCC--C-------CCCCCCCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEE
Q 009954 282 ----------GLA--S-------GAIGGAEGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFC 341 (521)
Q Consensus 282 ----------~~~--~-------~~~~~~~~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 341 (521)
.+. + .........++|||+||+. .+++++|.++|+.||.|..|+|+.++ +|||||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV 318 (481)
T TIGR01649 244 PHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALI 318 (481)
T ss_pred cccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEE
Confidence 000 0 0000122456899999998 69999999999999999999999873 689999
Q ss_pred EEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhh-ccCCCCCCCCCCCCCCCcce
Q 009954 342 VYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQ-TSGMNTLGGGMSLFGETLAK 420 (521)
Q Consensus 342 ~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 420 (521)
+|.+.++|..||..|||..|.|+.|.|.+++......+.......... ........ ......++.........++.
T Consensus 319 ~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~---~~~d~~~~~~~r~~~~~~~~~~~~~~ps~ 395 (481)
T TIGR01649 319 EMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLT---SYKDYSSSRNHRFKKPGSANKNNIQPPSA 395 (481)
T ss_pred EECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCc---ccccccCCccccCCCcccccccccCCCCc
Confidence 999999999999999999999999999998653211111000000000 00000000 00000011000000112344
Q ss_pred EEEeeCcCCcccCCChHHHHHHHHHHHHhhccccc--eeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCe
Q 009954 421 VLCLTEAITADALADDEEYEEILEDMREECGKYGT--LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK 498 (521)
Q Consensus 421 v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~--I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~ 498 (521)
.|.+.|+... .++++|+++|+.||. |..|++.... ++ ..|+|||+|.+.++|..||..|||+.
T Consensus 396 ~L~v~NLp~~----------~tee~L~~lF~~~G~~~i~~ik~~~~~-~~----~~~~gfVeF~~~e~A~~Al~~ln~~~ 460 (481)
T TIGR01649 396 TLHLSNIPLS----------VSEEDLKELFAENGVHKVKKFKFFPKD-NE----RSKMGLLEWESVEDAVEALIALNHHQ 460 (481)
T ss_pred EEEEecCCCC----------CCHHHHHHHHHhcCCccceEEEEecCC-CC----cceeEEEEcCCHHHHHHHHHHhcCCc
Confidence 4555555321 122599999999998 8889886543 22 14788999999999999999999999
Q ss_pred eCCcE------EEEEEcCC
Q 009954 499 FGGNT------VNAFYYPE 511 (521)
Q Consensus 499 ~~gr~------l~v~~~~~ 511 (521)
|+|+. |+|+|...
T Consensus 461 l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 461 LNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred cCCCCCCccceEEEEeccC
Confidence 99985 99999864
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=7.2e-30 Score=267.08 Aligned_cols=192 Identities=19% Similarity=0.205 Sum_probs=141.5
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|..|+ .|||+.|.|+.|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~------~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l 367 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL------IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKL 367 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE------EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4578999999999999999999999998654322 344456778999999999999999999 799999999999
Q ss_pred EEeCCCCCCccccccCCC-CCCCCCcccccccCCC-CCCCCCCCCCeEEEcCCCCCC----------CHHHHHHHHHhcC
Q 009954 252 RVRRPTDYNPTLAAALGP-GQPSPNLNLAAVGLAS-GAIGGAEGPDRVFVGGLPYYF----------TETQIKELLESFG 319 (521)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~nLp~~~----------te~~l~~~F~~~G 319 (521)
.|.++............. ..+.... ...... .......+..+|+|.||...- ..++|+++|++||
T Consensus 368 ~v~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G 444 (509)
T TIGR01642 368 HVQRACVGANQATIDTSNGMAPVTLL---AKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG 444 (509)
T ss_pred EEEECccCCCCCCccccccccccccc---cccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC
Confidence 999875432211110000 0000000 000000 001112345679999996421 1268999999999
Q ss_pred CeeEEEEeecC---CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 320 TLHGFDLVKDR---DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 320 ~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.|..|.|+++. .++...|+|||+|.+.++|++||..|||.+|+|+.|.|.|...
T Consensus 445 ~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 445 PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 99999998752 3456689999999999999999999999999999999999854
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.2e-29 Score=261.70 Aligned_cols=176 Identities=21% Similarity=0.302 Sum_probs=139.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
++|||+|||..+++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|.+||. |+|..|.|++|.|.++...
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchh
Confidence 589999999999999999999999999999999999999999999999999999999997 8999999999999987431
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcccc
Q 009954 375 GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYG 454 (521)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG 454 (521)
..... ... ....+. .+. ...|.+.|+... .++++|+++|+.||
T Consensus 169 ~~~~~----------------~~~-----~~~~~~-----~p~-~~~l~v~nl~~~----------~te~~l~~~f~~~G 211 (457)
T TIGR01622 169 KNRAA----------------KAA-----THQPGD-----IPN-FLKLYVGNLHFN----------ITEQELRQIFEPFG 211 (457)
T ss_pred hhhhh----------------hcc-----cccCCC-----CCC-CCEEEEcCCCCC----------CCHHHHHHHHHhcC
Confidence 11000 000 000000 011 233333333211 12259999999999
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCC
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~ 511 (521)
.|..|.|+.+..+|.. +|+|||+|.+.++|..|++.|||..|+|+.|+|.|+..
T Consensus 212 ~i~~v~~~~d~~~g~~---~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 212 DIEDVQLHRDPETGRS---KGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CeEEEEEEEcCCCCcc---ceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999998766543 68899999999999999999999999999999999763
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3.4e-30 Score=249.57 Aligned_cols=170 Identities=19% Similarity=0.311 Sum_probs=146.8
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
.....++|||+|||+++|+++|+++|..||.|..+. ++.+..++.++|||||+|.++++|.+|+ +|++..|.+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~------i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCR------IMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 345678999999999999999999999999864422 1344456678899999999999999999 799999999
Q ss_pred ceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 009954 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 328 (521)
++|+|.++..... ....++|||+|||..+++++|+++|++||.|..|.|+.
T Consensus 177 r~i~V~~a~p~~~-----------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~ 227 (346)
T TIGR01659 177 KRLKVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR 227 (346)
T ss_pred ceeeeeccccccc-----------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee
Confidence 9999987543110 01235799999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC--eEEEEEEccCC
Q 009954 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATAS 374 (521)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~ 374 (521)
++.+|.++|||||+|.+.++|++||+.||+..|.| +.|+|.++...
T Consensus 228 d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 228 DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 98899999999999999999999999999998865 79999999763
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=2.8e-29 Score=243.16 Aligned_cols=172 Identities=26% Similarity=0.352 Sum_probs=144.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||.++|+++|+++|+.||.|++|+|+.++.++.++|||||+|.++++|.+||+.|+|..|.++.|+|.|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhc
Q 009954 372 TASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
.+.... .....+.|-+|+..++ +++|+++|+
T Consensus 185 ~p~~~~------------------------------------~~~~~lfV~nLp~~vt-------------ee~L~~~F~ 215 (346)
T TIGR01659 185 RPGGES------------------------------------IKDTNLYVTNLPRTIT-------------DDQLDTIFG 215 (346)
T ss_pred cccccc------------------------------------cccceeEEeCCCCccc-------------HHHHHHHHH
Confidence 642100 0002222333333322 359999999
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCC--cEEEEEEcCCCCcc
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPEDKYF 515 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~g--r~l~v~~~~~~~~~ 515 (521)
+||+|+.|.|+++..++.+ +|+|||+|.+.++|++||+.||+..|.| +.|+|.|+.+..-.
T Consensus 216 ~fG~V~~v~i~~d~~tg~~---kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 216 KYGQIVQKNILRDKLTGTP---RGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred hcCCEEEEEEeecCCCCcc---ceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 9999999999998877765 5899999999999999999999999866 79999998876443
No 22
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.4e-29 Score=242.20 Aligned_cols=242 Identities=19% Similarity=0.335 Sum_probs=193.8
Q ss_pred eEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEEe
Q 009954 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (521)
Q Consensus 176 ~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v~ 254 (521)
.|||| +++|+..|.++|+++|.++.. ..+.+. + +-|||||.|.++++|.+|| .+|...+.|++|+|.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~------rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSI------RVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeE------EEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee
Confidence 58998 999999999999999997652 223444 3 8999999999999999999 799999999999999
Q ss_pred CCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC
Q 009954 255 RPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN 334 (521)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~ 334 (521)
|.... +..|||.||+++++..+|.++|+.||.|++|+|..+. .|
T Consensus 71 ~s~rd----------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g- 114 (369)
T KOG0123|consen 71 WSQRD----------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG- 114 (369)
T ss_pred hhccC----------------------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-
Confidence 84311 1239999999999999999999999999999999995 56
Q ss_pred cceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 009954 335 SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLF 414 (521)
Q Consensus 335 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (521)
++|| ||+|.++++|.+|+..|||..+.|+.|.|.....+......... ..
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~---------------------------- 164 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK---------------------------- 164 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh----------------------------
Confidence 9999 99999999999999999999999999999988653222111111 00
Q ss_pred CCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHH
Q 009954 415 GETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL 494 (521)
Q Consensus 415 ~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~l 494 (521)
..-+.+++.....+..+ ..|.++|..||.|..+.++.+.... + .|++||.|.++++|..|+..|
T Consensus 165 -~~~t~v~vk~~~~~~~~-----------~~l~~~f~~~g~i~s~~v~~~~~g~--~--~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 165 -KRFTNVYVKNLEEDSTD-----------EELKDLFSAYGSITSVAVMRDSIGK--S--KGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred -hhhhhhheeccccccch-----------HHHHHhhcccCcceEEEEeecCCCC--C--CCccceeecChhHHHHHHHhc
Confidence 01222333332222221 4899999999999999999987433 2 356699999999999999999
Q ss_pred hCCeeCCcEEEEEEcCC
Q 009954 495 SGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 495 ng~~~~gr~l~v~~~~~ 511 (521)
+|..++|..+-|.-+..
T Consensus 229 ~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 229 NGKIFGDKELYVGRAQK 245 (369)
T ss_pred cCCcCCccceeeccccc
Confidence 99999998888876544
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.6e-28 Score=237.46 Aligned_cols=290 Identities=22% Similarity=0.353 Sum_probs=218.0
Q ss_pred CCCCCCCCccccchhhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHH
Q 009954 155 LGAFPLMPVQVMTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEE 234 (521)
Q Consensus 155 ~~~~~~~p~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~ 234 (521)
...+.+.+..+|+.+..... |||.||++.++..+|.++|+.||.|++|. +...-..++|| ||+|.++++
T Consensus 59 ~~~~~~~~~rim~s~rd~~~--~~i~nl~~~~~~~~~~d~f~~~g~ilS~k--------v~~~~~g~kg~-FV~f~~e~~ 127 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRDPSL--VFIKNLDESIDNKSLYDTFSEFGNILSCK--------VATDENGSKGY-FVQFESEES 127 (369)
T ss_pred CcccCCcEEEeehhccCCce--eeecCCCcccCcHHHHHHHHhhcCeeEEE--------EEEcCCCceee-EEEeCCHHH
Confidence 34556677777777655444 99999999999999999999999987763 22222338999 999999999
Q ss_pred HHHHH-HccCceecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 009954 235 ASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313 (521)
Q Consensus 235 a~~A~-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~ 313 (521)
|.+|+ .+||..+.|++|.|.............. . .....+.++|.+++.+++++.|.+
T Consensus 128 a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~--------------------~-~~~~~t~v~vk~~~~~~~~~~l~~ 186 (369)
T KOG0123|consen 128 AKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLG--------------------E-YKKRFTNVYVKNLEEDSTDEELKD 186 (369)
T ss_pred HHHHHHHhcCcccCCCeeEEeeccchhhhccccc--------------------c-hhhhhhhhheeccccccchHHHHH
Confidence 99999 7999999999999976544332211000 0 122235799999999999999999
Q ss_pred HHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHH
Q 009954 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIA 393 (521)
Q Consensus 314 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (521)
+|..+|.|.++.++.+. .|.++||+||+|.+.++|..|+..|+|..+.+..+.|..+.. ..+....+........
T Consensus 187 ~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk----k~e~~~~l~~~~~~~~ 261 (369)
T KOG0123|consen 187 LFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK----KSEREAELKRKFEQEF 261 (369)
T ss_pred hhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc----chhhHHHHhhhhHhhh
Confidence 99999999999999985 677999999999999999999999999999999999998865 2222222222211111
Q ss_pred HHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCC
Q 009954 394 IQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPG 473 (521)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g 473 (521)
.+.... ....+..|-++...++. +.|.++|+.||+|..++|+.+.. +. .
T Consensus 262 ~~~~~~--------------~~~~nl~vknld~~~~~-------------e~L~~~f~~~GeI~s~kv~~~~~-g~---s 310 (369)
T KOG0123|consen 262 AKRSVS--------------LQGANLYVKNLDETLSD-------------EKLRKIFSSFGEITSAKVMVDEN-GK---S 310 (369)
T ss_pred hhcccc--------------ccccccccccCccccch-------------hHHHHHHhcccceeeEEEEeccC-CC---c
Confidence 111100 00122222222222222 48999999999999999999873 33 3
Q ss_pred ccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 474 VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 474 ~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
+|++||+|.+.++|..|+..+||..++|+.|.|.+.-..
T Consensus 311 kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 311 KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRK 349 (369)
T ss_pred cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhh
Confidence 578899999999999999999999999999999886533
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=3.2e-27 Score=235.45 Aligned_cols=197 Identities=23% Similarity=0.374 Sum_probs=144.8
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC--c
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG--V 249 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~ 249 (521)
..++|||+|||..+++++|.++|.+||.+..+. .+.+...+.++|||||+|.+.++|..|+ .|||..+.| .
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~------~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSR------ILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 356899999999999999999999999853211 0112223457899999999999999999 799999887 5
Q ss_pred eEEEeCCCCCCccccccCC--------CCCCC-------------------------CCc--------------------
Q 009954 250 AVRVRRPTDYNPTLAAALG--------PGQPS-------------------------PNL-------------------- 276 (521)
Q Consensus 250 ~i~v~~~~~~~~~~~~~~~--------~~~~~-------------------------~~~-------------------- 276 (521)
+|.|.++............ +.... ...
T Consensus 162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR01661 162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA 241 (352)
T ss_pred eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence 7888876533211000000 00000 000
Q ss_pred c--------cccccCCCC--CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCh
Q 009954 277 N--------LAAVGLASG--AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP 346 (521)
Q Consensus 277 ~--------~~~~~~~~~--~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 346 (521)
. ........+ .........+|||+|||..+++++|.++|++||.|.+|+|+.++.+|.++|||||+|.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~ 321 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNY 321 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCH
Confidence 0 000000000 000112234799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeeCCeEEEEEEccCCC
Q 009954 347 AVTDIACAALNGLKMGDKTLTVRRATASG 375 (521)
Q Consensus 347 ~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (521)
++|.+||+.|||..|+|+.|+|.|...+.
T Consensus 322 ~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 322 DEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999999999997654
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3.3e-27 Score=240.02 Aligned_cols=175 Identities=20% Similarity=0.411 Sum_probs=141.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||+.+++++|+++|++||.|.+|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEE--eeCcCCcccCCChHHHHHHHHHHHHhhc
Q 009954 374 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLC--LTEAITADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
..+..+..... ........+|++ |+..++. ++|+++|+
T Consensus 187 ~p~a~~~~~~~---------------------------~~~~~~~~rLfVgnLp~~vte-------------edLk~lFs 226 (612)
T TIGR01645 187 MPQAQPIIDMV---------------------------QEEAKKFNRIYVASVHPDLSE-------------TDIKSVFE 226 (612)
T ss_pred ccccccccccc---------------------------cccccccceEEeecCCCCCCH-------------HHHHHHHh
Confidence 22211100000 000011223333 3333233 59999999
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCC
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~ 511 (521)
.||.|+.|.|+++..++.. +|||||+|.+.++|..||..|||+.|+|+.|+|.++..
T Consensus 227 ~FG~I~svrl~~D~~tgks---KGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 227 AFGEIVKCQLARAPTGRGH---KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hcCCeeEEEEEecCCCCCc---CCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999999999998866543 57889999999999999999999999999999998653
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.2e-27 Score=208.25 Aligned_cols=178 Identities=18% Similarity=0.342 Sum_probs=150.4
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~ 252 (521)
.--|||+.|.+.++.++|++.|.+||+|..+. +|.|..+.+++||+||.|...++|+.|| +|||+=|++|.|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~ak------virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAK------VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccce------EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 45699999999999999999999999986554 5899999999999999999999999999 7999999999999
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 332 (521)
-+|+.-+.... +.................++|||+|++..++|++|++.|++||.|..|+|.++
T Consensus 136 TNWATRKp~e~-------------n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~--- 199 (321)
T KOG0148|consen 136 TNWATRKPSEM-------------NGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD--- 199 (321)
T ss_pred ccccccCcccc-------------CCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---
Confidence 99976544110 00001111111222345578999999999999999999999999999999998
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCC
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQ 376 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 376 (521)
+|||||.|.+.|.|.+||..|||..|+|..|++.|.+....
T Consensus 200 ---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 200 ---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred ---cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 78999999999999999999999999999999999977443
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=4.7e-25 Score=218.28 Aligned_cols=290 Identities=20% Similarity=0.254 Sum_probs=206.5
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
......-|+|+|||..+..++|..+|..||. |..+.+....--|+|+|.++.+|.+|+ .|....+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~------------i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~ 448 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGE------------IGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKS 448 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccc------------cceeecCcccceeeeeecCccchHHHHHHhchhhhcc
Confidence 3344577999999999999999999999998 444444434445999999999999999 699988888
Q ss_pred ceEEEeCCCCCCcccc---ccC--CCCCC---CCCcccccc----c--CC--CCC-----CCCCCCCCeEEEcCCCCCCC
Q 009954 249 VAVRVRRPTDYNPTLA---AAL--GPGQP---SPNLNLAAV----G--LA--SGA-----IGGAEGPDRVFVGGLPYYFT 307 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~---~~~--~~~~~---~~~~~~~~~----~--~~--~~~-----~~~~~~~~~l~v~nLp~~~t 307 (521)
.++.+.|+........ ... .+..+ .+....... . .. -+. .......++|||.||+++++
T Consensus 449 ~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt 528 (725)
T KOG0110|consen 449 APLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTT 528 (725)
T ss_pred CccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccc
Confidence 8888877553222200 000 00000 000000000 0 00 000 01112234499999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCCC---CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHH
Q 009954 308 ETQIKELLESFGTLHGFDLVKDRDT---GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESI 384 (521)
Q Consensus 308 e~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~ 384 (521)
.++|..+|.+.|.|.++.|...+.. -.|.|||||+|.++++|+.|++.|+|+.|.|..|.|.++..+....-.
T Consensus 529 ~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g---- 604 (725)
T KOG0110|consen 529 LEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG---- 604 (725)
T ss_pred hhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc----
Confidence 9999999999999999988776421 135599999999999999999999999999999999999631111000
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCC
Q 009954 385 LAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRP 464 (521)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~ 464 (521)
.+ .+. ....++| |+.|.+|+.+..+|+++|+.||.|..|.|++.
T Consensus 605 --------------K~----------~~~-kk~~tKI-----------lVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 605 --------------KK----------KSK-KKKGTKI-----------LVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred --------------cc----------ccc-cccccee-----------eeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 00 000 0011222 33455777888999999999999999999997
Q ss_pred CCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 465 DQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 465 ~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
...+ -+.|++||+|-++.+|.+|+..|....|-||.|.+.|+..+..
T Consensus 649 ~~k~---a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 649 IGKG---AHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hcch---hhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 3222 2356779999999999999999999999999999999988764
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5.7e-25 Score=205.02 Aligned_cols=173 Identities=26% Similarity=0.398 Sum_probs=140.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCe-eC--CeEEEEE
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK-MG--DKTLTVR 369 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~-~~--g~~l~v~ 369 (521)
..-+|||+-+|..++|.||+++|++||.|..|.|++|+.||.++|||||.|.+.++|.+|+.+||+.+ |- ..+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 33479999999999999999999999999999999999999999999999999999999999999854 44 4788999
Q ss_pred EccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHh
Q 009954 370 RATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREE 449 (521)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~ 449 (521)
|++.......+ +...+|-.|+.-.+. .+|+++
T Consensus 113 ~Ad~E~er~~~-----------------------------------e~KLFvg~lsK~~te-------------~evr~i 144 (510)
T KOG0144|consen 113 YADGERERIVE-----------------------------------ERKLFVGMLSKQCTE-------------NEVREI 144 (510)
T ss_pred ccchhhhcccc-----------------------------------chhhhhhhccccccH-------------HHHHHH
Confidence 98642111100 022233334433333 499999
Q ss_pred hccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCe-eCC--cEEEEEEcCCCCcccc
Q 009954 450 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK-FGG--NTVNAFYYPEDKYFNK 517 (521)
Q Consensus 450 f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~-~~g--r~l~v~~~~~~~~~~~ 517 (521)
|++||.|++|.|+++. .+. .+|||||+|.+.|.|..||+.|||.. +.| .+|.|.|++..+-..+
T Consensus 145 Fs~fG~Ied~~ilrd~-~~~---sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 145 FSRFGHIEDCYILRDP-DGL---SRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred HHhhCccchhhheecc-ccc---ccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 9999999999999987 433 36999999999999999999999987 666 6899999998775443
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=2.9e-25 Score=183.91 Aligned_cols=172 Identities=25% Similarity=0.405 Sum_probs=143.3
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
....+|||+||+..++++.|.++|-+.|.++..+. ..+..+...+|||||+|.++++|+.|+ -||...+.|++
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i------PkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrp 80 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI------PKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRP 80 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeec------chhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCce
Confidence 34568999999999999999999999997432211 222333457899999999999999999 59999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeec
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKD 329 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~ 329 (521)
|+|..+...... .....+|||+||.+.++|..|.+.|+.||.|.. -+|+++
T Consensus 81 Irv~kas~~~~n----------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 81 IRVNKASAHQKN----------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred eEEEeccccccc----------------------------ccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 999875421111 112248999999999999999999999999765 478999
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCC
Q 009954 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQS 377 (521)
Q Consensus 330 ~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~ 377 (521)
+.||.++|||||.|.+.|.+.+|+..|+|..+.+++|+|.|+..+...
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999875443
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.6e-24 Score=184.66 Aligned_cols=170 Identities=26% Similarity=0.433 Sum_probs=146.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 290 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
..+..++|.|.-||..+|+++|+.+|...|+|+++++++|+.+|.+-||+||.|.++++|++|++.|||..+..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHh
Q 009954 370 RATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREE 449 (521)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~ 449 (521)
|+.+.... .-..+..|-.|+...++. +|..+
T Consensus 117 yARPSs~~------------------------------------Ik~aNLYvSGlPktMtqk-------------elE~i 147 (360)
T KOG0145|consen 117 YARPSSDS------------------------------------IKDANLYVSGLPKTMTQK-------------ELEQI 147 (360)
T ss_pred eccCChhh------------------------------------hcccceEEecCCccchHH-------------HHHHH
Confidence 99762111 011455555666665554 89999
Q ss_pred hccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCC--cEEEEEEcCC
Q 009954 450 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPE 511 (521)
Q Consensus 450 f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~g--r~l~v~~~~~ 511 (521)
|++||.|..-+|..|..+|. ++ |.+||.|+..++|+.||+.|||..--| .+|.|.|++.
T Consensus 148 Fs~fGrIItSRiL~dqvtg~-sr--GVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFann 208 (360)
T KOG0145|consen 148 FSPFGRIITSRILVDQVTGL-SR--GVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANN 208 (360)
T ss_pred HHHhhhhhhhhhhhhcccce-ec--ceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCC
Confidence 99999999999999998876 34 555999999999999999999999877 4688888754
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=8.5e-24 Score=175.23 Aligned_cols=171 Identities=22% Similarity=0.318 Sum_probs=143.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
....+|||+||+..++++-|.++|-+.|+|..|.++++..+...+|||||+|.++|+|+-|++.||+..|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhc
Q 009954 372 TASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
.. .+.... ...+.+|-+|...++. ..|.+.|+
T Consensus 87 s~-~~~nl~----------------------------------vganlfvgNLd~~vDe-------------~~L~dtFs 118 (203)
T KOG0131|consen 87 SA-HQKNLD----------------------------------VGANLFVGNLDPEVDE-------------KLLYDTFS 118 (203)
T ss_pred cc-cccccc----------------------------------ccccccccccCcchhH-------------HHHHHHHH
Confidence 52 111000 0134445555443333 37899999
Q ss_pred cccceeEE-EecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 452 KYGTLVNV-VIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 452 ~fG~I~~v-~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
.||.|... .|+++..+|++ .|++||.|++.+.+.+||..|||..+++++++|+++-.+.
T Consensus 119 afG~l~~~P~i~rd~~tg~~---~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 119 AFGVLISPPKIMRDPDTGNP---KGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred hccccccCCcccccccCCCC---CCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 99998775 88898877775 4677999999999999999999999999999999975543
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1e-23 Score=192.20 Aligned_cols=173 Identities=21% Similarity=0.424 Sum_probs=147.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
++|||+.+.+.+-|+.|+..|.+||+|++|.+..|+.|++.+|||||+|+-+|.|+.|++.|||..++|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcccc
Q 009954 375 GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYG 454 (521)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG 454 (521)
.|..+-.+.....+. ...+|++-....++.+ +||+..|+.||
T Consensus 194 pQAQpiID~vqeeAk---------------------------~fnRiYVaSvHpDLSe-----------~DiKSVFEAFG 235 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAK---------------------------KFNRIYVASVHPDLSE-----------TDIKSVFEAFG 235 (544)
T ss_pred cccchHHHHHHHHHH---------------------------hhheEEeeecCCCccH-----------HHHHHHHHhhc
Confidence 555544433322211 4556676655555543 59999999999
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEE
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFY 508 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~ 508 (521)
+|++|.+.+....+.+ + |++|++|.+...-..||..||-+.|||+-|+|--
T Consensus 236 ~I~~C~LAr~pt~~~H-k--GyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 236 EIVKCQLARAPTGRGH-K--GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred ceeeEEeeccCCCCCc-c--ceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 9999999999855553 4 5559999999999999999999999999999864
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=1.3e-22 Score=206.62 Aligned_cols=200 Identities=20% Similarity=0.242 Sum_probs=147.8
Q ss_pred HHHHHHHH-HccCceecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 009954 232 VEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310 (521)
Q Consensus 232 ~~~a~~A~-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~ 310 (521)
.++|.+|| +++|..+........+..+- +.+. .......++|||+|||.+++|++
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp--------------~~~~----------~~~p~~~~~lFVgnLp~~~tEd~ 74 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPP--------------PGWS----------GVQPGRGCEVFVGKIPRDLYEDE 74 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCC--------------Cccc----------CCCCCCCCEEEeCCCCCCCCHHH
Confidence 57788888 79998887766666553211 1000 00123347899999999999999
Q ss_pred HHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC-CeEEEEEEccCCCCCchHHHHHHHHHH
Q 009954 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATASGQSKTEQESILAQAQ 389 (521)
Q Consensus 311 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~ 389 (521)
|+++|++||.|..|+|+.| .+|.++|||||+|.+.++|++||+.||+..|. |+.|.|.++..
T Consensus 75 L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~---------------- 137 (578)
T TIGR01648 75 LVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD---------------- 137 (578)
T ss_pred HHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc----------------
Confidence 9999999999999999999 79999999999999999999999999998885 77777765521
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccc-eeEEEecCCCCCC
Q 009954 390 QHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGT-LVNVVIPRPDQNG 468 (521)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~-I~~v~i~~~~~~~ 468 (521)
.....|-+|+...+ +++|.++|++|+. |+.+.+.....+.
T Consensus 138 --------------------------~~rLFVgNLP~~~T-------------eeeL~eeFskv~egvv~vIv~~~~~~k 178 (578)
T TIGR01648 138 --------------------------NCRLFVGGIPKNKK-------------REEILEEFSKVTEGVVDVIVYHSAADK 178 (578)
T ss_pred --------------------------CceeEeecCCcchh-------------hHHHHHHhhcccCCceEEEEecccccc
Confidence 02222223333222 2589999999874 5555554322111
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHHHhC--CeeCCcEEEEEEcCCCC
Q 009954 469 GETPGVGKVFLEYYDAVGCATAKNALSG--RKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 469 ~~~~g~g~afV~F~~~~~A~~Ai~~lng--~~~~gr~l~v~~~~~~~ 513 (521)
.+..|+|||+|.++++|..|+..|+. ..+.|+.|.|.|+..+.
T Consensus 179 --gKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 179 --KKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred --CccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 23468889999999999999998864 35899999999987654
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=5.5e-23 Score=198.46 Aligned_cols=177 Identities=20% Similarity=0.305 Sum_probs=135.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCC
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASG 375 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (521)
+||+--|...+++-+|.++|+.+|.|..|.|+.|..++.++|.|||+|.+.+....||. |.|..+.|.+|.|.....
T Consensus 181 tvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa-- 257 (549)
T KOG0147|consen 181 TVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA-- 257 (549)
T ss_pred HHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH--
Confidence 45555666667788999999999999999999999999999999999999999999995 999999999999997632
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhccCCCC-CCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcccc
Q 009954 376 QSKTEQESILAQAQQHIAIQKMALQTSGMNT-LGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYG 454 (521)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG 454 (521)
+. +......++.. .+...|. ..+.|-+| .++.++++|+.+|++||
T Consensus 258 ------ek------------nr~a~~s~a~~~k~~~~p~---~rl~vgnL-------------HfNite~~lr~ifepfg 303 (549)
T KOG0147|consen 258 ------EK------------NRAANASPALQGKGFTGPM---RRLYVGNL-------------HFNITEDMLRGIFEPFG 303 (549)
T ss_pred ------HH------------HHHHhccccccccccccch---hhhhhccc-------------ccCchHHHHhhhccCcc
Confidence 10 00111111111 1111111 11222222 22233369999999999
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
.|+.|.++++..+|. ++|+| ||+|.+.++|.+|+..|||+.|.|+.|+|..+++.
T Consensus 304 ~Ie~v~l~~d~~tG~-skgfG--fi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 304 KIENVQLTKDSETGR-SKGFG--FITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred cceeeeecccccccc-ccCcc--eEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999988887 45555 99999999999999999999999999999988764
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.1e-22 Score=190.86 Aligned_cols=164 Identities=22% Similarity=0.330 Sum_probs=138.2
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-------cCCCCeEEEEecCHHHHHHHH-H-c
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-------NHEKKFAFVEMRTVEEASNAM-A-L 241 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-------~~~~g~afV~f~~~~~a~~A~-~-l 241 (521)
+...+.|||||||.+.++++|.+.|++.++ -|+++.+ .+++|||||+|.+...|..|- . +
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte-----------GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE-----------GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLM 229 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC-----------CeeEEEEecCccccccccceEEEEeecchhHHHHHhhcc
Confidence 356789999999999999999999999865 2555544 356899999999999999988 4 4
Q ss_pred cC-ceecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC
Q 009954 242 DG-IIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320 (521)
Q Consensus 242 ~g-~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~ 320 (521)
++ ..+.|..+.|.|+.+...... ........|||+||+.+||++.|+++|+.||.
T Consensus 230 ~g~~klwgn~~tVdWAep~~e~de------------------------d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 230 PGKIKLWGNAITVDWAEPEEEPDE------------------------DTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred CCceeecCCcceeeccCcccCCCh------------------------hhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 54 668999999999876543211 11233467999999999999999999999999
Q ss_pred eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCC
Q 009954 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQS 377 (521)
Q Consensus 321 i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~ 377 (521)
|+.|+.++| ||||.|.+.++|.+||+.|||..|.|..|.|..|++....
T Consensus 286 veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 286 VERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 999998877 9999999999999999999999999999999999884433
No 36
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=4.4e-22 Score=190.95 Aligned_cols=195 Identities=18% Similarity=0.311 Sum_probs=144.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
.||||++||+.++.++|.++|+.+|+|..+.++.++.++.++||+||.|.-.++++.|++.+.+..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999774
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcccc
Q 009954 375 GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYG 454 (521)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG 454 (521)
.-........ .. +......+..+ -- .-...+..-.| +.|++|..-..||+.+|+.||
T Consensus 86 ~r~e~~~~~e-~~-----~veK~~~q~~~----~k-~~v~~~k~rLI------------IRNLPf~~k~~dLk~vFs~~G 142 (678)
T KOG0127|consen 86 ARSEEVEKGE-NK-----AVEKPIEQKRP----TK-AKVDLPKWRLI------------IRNLPFKCKKPDLKNVFSNFG 142 (678)
T ss_pred ccchhccccc-ch-----hhhcccccCCc----ch-hhccCccceEE------------eecCCcccCcHHHHHHHhhcc
Confidence 3322100000 00 00000000000 00 00000011112 223333333369999999999
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCccc
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 516 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~~ 516 (521)
.|..|.|++...... .|+|||+|....+|..||+.|||..|+||+|-|.|+-..+-+.
T Consensus 143 ~V~Ei~IP~k~dgkl----cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 143 KVVEIVIPRKKDGKL----CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred eEEEEEcccCCCCCc----cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 999999998774444 2888999999999999999999999999999999976554443
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=2.3e-22 Score=178.59 Aligned_cols=146 Identities=25% Similarity=0.457 Sum_probs=131.9
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEE
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v 253 (521)
-+|||||||..+++.+|+.+|++||+ |+.+.+. |.||||..++...|..|+ .|+|..|.|..|.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk------------VlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInV 68 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK------------VLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINV 68 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc------------eEeeeee--cccceEEeecccccHHHHhhcccceecceEEEE
Confidence 36999999999999999999999998 5555553 579999999999999999 69999999999999
Q ss_pred eCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC
Q 009954 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333 (521)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g 333 (521)
+.++.+. ...++|+|+||.+.++.++|+..|++||+|..+.|+++
T Consensus 69 eaSksKs-------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---- 113 (346)
T KOG0109|consen 69 EASKSKS-------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---- 113 (346)
T ss_pred EeccccC-------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----
Confidence 9765442 22358999999999999999999999999999999987
Q ss_pred CcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 334 ~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
|+||.|.-.++|..|+..|+|..|.|+.++|+.++.
T Consensus 114 ----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 114 ----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred ----eeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 999999999999999999999999999999998876
No 38
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.87 E-value=5.8e-21 Score=173.90 Aligned_cols=208 Identities=20% Similarity=0.366 Sum_probs=157.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeE
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (521)
.+.|||.|||.++|.+++.++|++||.|. .|+|.++. .|.-+|=|+|.|...++...|++.|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 35699999999999999999999999886 48888885 6999999999999999999999999999999999
Q ss_pred EEEEEccC--CCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCCh-HHHHHH
Q 009954 366 LTVRRATA--SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADD-EEYEEI 442 (521)
Q Consensus 366 l~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~~~~~~ 442 (521)
|+|..|+- ++...+..... .........+........+. +.- ....-....+++++.|+++++++..+ ....+|
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k-~k~~~~kk~~k~q~k~~dw~-pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEK-GKCKDKKKLKKQQQKLLDWR-PDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred EEEehhhhhhccCcCcccccc-cccccHHHHHHHHHhhcccC-CCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999876 11111100000 00000001111111111111 000 01111245668899999999999887 668999
Q ss_pred HHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 443 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 443 ~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
++||++.|++||.|.+|.|.-.++. |.|-|.|.+.++|..||+.|+|+.|+||+|.++..+-.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPd-------GvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPD-------GVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCC-------ceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 9999999999999999999865543 78899999999999999999999999999999987654
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=4.3e-21 Score=170.55 Aligned_cols=149 Identities=22% Similarity=0.408 Sum_probs=127.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
.+|||+|||..+++.+|+.+|++||+|+.+.|+++ ||||..++...|..||..|||..|.|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999987 8999999999999999999999999999999988753
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcccc
Q 009954 375 GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYG 454 (521)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG 454 (521)
.. ..+++.+-+...+... ++|+..|++||
T Consensus 75 sk----------------------------------------~stkl~vgNis~tctn-----------~ElRa~fe~yg 103 (346)
T KOG0109|consen 75 SK----------------------------------------ASTKLHVGNISPTCTN-----------QELRAKFEKYG 103 (346)
T ss_pred CC----------------------------------------CccccccCCCCccccC-----------HHHhhhhcccC
Confidence 11 2222222222222221 58999999999
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
+|+.|.|.+ +++||.|.-.++|..||..|+|..|.|+.++|+..+...
T Consensus 104 pviecdivk-----------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 104 PVIECDIVK-----------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred Cceeeeeec-----------ceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 999999988 478999999999999999999999999999999876543
No 40
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.84 E-value=1.4e-20 Score=174.73 Aligned_cols=304 Identities=15% Similarity=0.174 Sum_probs=190.5
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHH---ccCceecCc
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA---LDGIIFEGV 249 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~---l~g~~~~g~ 249 (521)
.++-|+++|||.+++|++|.+++.+||. |..+...+.+..||++|.+.+.|...+. .-.-.+.|+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~------------vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~ 94 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGK------------VTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQ 94 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccc------------eeeeeeeccchhhhhhhcchhhhhheeecccccCccccCc
Confidence 4678999999999999999999999998 6777777788899999999999988552 222446788
Q ss_pred eEEEeCCCCCCccccccC----C-----CCCCCC--CcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhc
Q 009954 250 AVRVRRPTDYNPTLAAAL----G-----PGQPSP--NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESF 318 (521)
Q Consensus 250 ~i~v~~~~~~~~~~~~~~----~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~ 318 (521)
+|.|+++....-...... + ...... ...........|...+....-+++|.++-+.++-+-|..+|++|
T Consensus 95 ~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~f 174 (492)
T KOG1190|consen 95 PIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKF 174 (492)
T ss_pred ceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhc
Confidence 888887442111100000 0 000000 11111111122222233334467899999999999999999999
Q ss_pred CCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee--CCeEEEEEEccCCCCCchHHH------HH---HHH
Q 009954 319 GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATASGQSKTEQE------SI---LAQ 387 (521)
Q Consensus 319 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~v~~~~~~~~~~~~~~------~~---~~~ 387 (521)
|.|..|.-.... .. --|+|+|.+.+.|+.|..+|+|..| +-|+|+|.|++.......-.. .. ...
T Consensus 175 G~VlKIiTF~Kn--n~--FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~g 250 (492)
T KOG1190|consen 175 GFVLKIITFTKN--NG--FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVG 250 (492)
T ss_pred ceeEEEEEEecc--cc--hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCC
Confidence 999888655542 11 1389999999999999999999876 447888888765110000000 00 000
Q ss_pred ----HHHHHHHHHHhhhc----cCCCCCCCCC------CCC-CCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcc
Q 009954 388 ----AQQHIAIQKMALQT----SGMNTLGGGM------SLF-GETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 452 (521)
Q Consensus 388 ----~~~~~~~~~~~~~~----~~~~~~~~~~------~~~-~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~ 452 (521)
..+........... .+...+.... +.. .+.-..++.+.|. .+ +..+.+-|..+|+.
T Consensus 251 d~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl-n~--------~~VT~d~LftlFgv 321 (492)
T KOG1190|consen 251 DGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL-NE--------EAVTPDVLFTLFGV 321 (492)
T ss_pred ccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC-ch--------hccchhHHHHHHhh
Confidence 00000000000000 0000000000 000 0111233333332 11 22233589999999
Q ss_pred ccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 453 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 453 fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
||.|..|+|..++. -.|.|+|.+...|+-|++.|+|..+-|++|+|++.
T Consensus 322 YGdVqRVkil~nkk--------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 322 YGDVQRVKILYNKK--------DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred hcceEEEEeeecCC--------cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 99999999999763 35799999999999999999999999999999984
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=6.3e-20 Score=160.93 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=144.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCe-eC--CeEEEEEE
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK-MG--DKTLTVRR 370 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~-~~--g~~l~v~~ 370 (521)
.++|||+-|...-.|+|++.+|..||.|.++.+.+.+ .|.+||+|||.|.+..+|+.||..|||.. +- ...|.|.|
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 3689999999999999999999999999999999986 89999999999999999999999999943 43 47789999
Q ss_pred ccCCCCCchHHHHH------------------HHHHHHH------------------------HHHHHHhhhcc-----C
Q 009954 371 ATASGQSKTEQESI------------------LAQAQQH------------------------IAIQKMALQTS-----G 403 (521)
Q Consensus 371 ~~~~~~~~~~~~~~------------------~~~~~~~------------------------~~~~~~~~~~~-----~ 403 (521)
++.........-.. ....+.. ..++....-.. .
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 87622111000000 0000000 01111000000 0
Q ss_pred -------CCC---------CCCCC--------------------------------------------------------
Q 009954 404 -------MNT---------LGGGM-------------------------------------------------------- 411 (521)
Q Consensus 404 -------~~~---------~~~~~-------------------------------------------------------- 411 (521)
.+. ++...
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 000 00000
Q ss_pred -----------CC------------CCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCC
Q 009954 412 -----------SL------------FGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNG 468 (521)
Q Consensus 412 -----------~~------------~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~ 468 (521)
|. +..++.+|+.|+..+... +|..+|-+||.|++.++..|..+.
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDa-------------EliQmF~PFGhivSaKVFvDRATN 324 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDA-------------ELIQMFLPFGHIVSAKVFVDRATN 324 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccH-------------HHHHHhccccceeeeeeeehhccc
Confidence 00 125667777777776665 899999999999999999998776
Q ss_pred CCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 469 GETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 469 ~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
. ++.+| ||.|+|+.+|+.||..|||+.||-+.|+|.+--++
T Consensus 325 Q-SKCFG--FVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 325 Q-SKCFG--FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred c-cccee--eEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 6 44445 99999999999999999999999999999885544
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.83 E-value=2.2e-20 Score=185.48 Aligned_cols=167 Identities=22% Similarity=0.427 Sum_probs=139.6
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC---------CCCeEEEEecCHHHHHHHH-HccCc
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH---------EKKFAFVEMRTVEEASNAM-ALDGI 244 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~---------~~g~afV~f~~~~~a~~A~-~l~g~ 244 (521)
++|||.||++.+|.++|..+|...|.| +++.+.. +.|||||+|.+.++|+.|+ .|+|.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~V------------lS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTV------------LSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeE------------EEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 349999999999999999999999884 4443332 3499999999999999999 79999
Q ss_pred eecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 009954 245 IFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (521)
Q Consensus 245 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v 324 (521)
.|.|..|.|+++..... .+.+...+ .....+.|+|+|||+.++..+|+++|..||.|.+|
T Consensus 584 vldGH~l~lk~S~~k~~---~~~gK~~~-----------------~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksv 643 (725)
T KOG0110|consen 584 VLDGHKLELKISENKPA---STVGKKKS-----------------KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSV 643 (725)
T ss_pred eecCceEEEEeccCccc---cccccccc-----------------cccccceeeeeccchHHHHHHHHHHHhcccceeee
Confidence 99999999998651111 11110000 01224689999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 325 ~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
+|+.....+.++|||||+|-++.+|..|+.+|.++.|.|+.|.+.|+..
T Consensus 644 RlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 644 RLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred ccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 9998866777899999999999999999999999999999999999976
No 43
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.5e-19 Score=177.58 Aligned_cols=188 Identities=16% Similarity=0.244 Sum_probs=140.0
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....++++|++||..+++.++.+++..||.+.++.+ +++..++.++||||.+|.+...+..|+ .|||+.++++
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l------v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL------VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhhee------ecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 345678999999999999999999999999988876 777788899999999999999999999 6999999999
Q ss_pred eEEEeCCCCCCccccccCCCCCCCCCccc---ccccCCCC-CCCCCCCCCeEEEcCCCC--CC-CH-------HHHHHHH
Q 009954 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNL---AAVGLASG-AIGGAEGPDRVFVGGLPY--YF-TE-------TQIKELL 315 (521)
Q Consensus 250 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~l~v~nLp~--~~-te-------~~l~~~F 315 (521)
++.|+.+..-... +....+. ...+.... ..........|.+.|+-. +. .+ ++|+..|
T Consensus 360 ~lvvq~A~~g~~~---------~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec 430 (500)
T KOG0120|consen 360 KLVVQRAIVGASN---------ANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC 430 (500)
T ss_pred eeEeehhhccchh---------ccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh
Confidence 9999875432221 1111110 01111111 111223334455656521 11 11 5678888
Q ss_pred HhcCCeeEEEEeecCC---CCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 316 ESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 316 ~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
++||.|.+|.|.++-. ..-..|..||+|.+.+++++|+++|+|.+|+|+.|...|...
T Consensus 431 ~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 431 AKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred cccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 9999999999988721 223456789999999999999999999999999999999854
No 44
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.82 E-value=8.5e-19 Score=162.90 Aligned_cols=297 Identities=16% Similarity=0.142 Sum_probs=192.8
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCe-EEEEecCHHHHHHHH-HccCceecC--c
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF-AFVEMRTVEEASNAM-ALDGIIFEG--V 249 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g--~ 249 (521)
--.++|+++-+-+|-+-|..+|++||.+ .+-+.+.+..+| |.|+|.+.+.|+.|. .|+|..|.. +
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~V-----------lKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcC 218 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFV-----------LKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCC 218 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhccee-----------EEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCcee
Confidence 3468899999999999999999999984 344455667775 999999999999999 799988764 5
Q ss_pred eEEEeCCCC----------CCccccc---cCCCCCCCC---------------Cccccccc---CCC---CCCCCCCCCC
Q 009954 250 AVRVRRPTD----------YNPTLAA---ALGPGQPSP---------------NLNLAAVG---LAS---GAIGGAEGPD 295 (521)
Q Consensus 250 ~i~v~~~~~----------~~~~~~~---~~~~~~~~~---------------~~~~~~~~---~~~---~~~~~~~~~~ 295 (521)
.|+|.+++. +...-.. ..+..+|.- ....+... ... +..+......
T Consensus 219 tLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~ 298 (492)
T KOG1190|consen 219 TLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANV 298 (492)
T ss_pred EEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCce
Confidence 566654331 1111000 001000000 00000000 000 0011111245
Q ss_pred eEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 296 RVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 296 ~l~v~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
.|.|.||... +|.+.|..+|..||.|..|+|..++. --|+|+|.+...|+.|++.|+|..+.|+.|+|.+++..
T Consensus 299 vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 6889999765 89999999999999999999988753 35999999999999999999999999999999999763
Q ss_pred CCCchHHH-H--HHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhc
Q 009954 375 GQSKTEQE-S--ILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 375 ~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
....+... . .+........+ .....||.-.....-.++..+.|.++.+.- .+++|+++|.
T Consensus 374 ~vqlp~egq~d~glT~dy~~spL-------hrfkkpgsKN~~ni~PpsatlHlsnip~sv----------see~lk~~f~ 436 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPL-------HRFKKPGSKNYQNIFPPSATLHLSNIPPSV----------SEEDLKNLFQ 436 (492)
T ss_pred cccCCCCCCccccccccCCCCch-------hhccCcccccccccCCchhheeeccCCccc----------chhHHHHhhh
Confidence 22221100 0 00000000000 000112221111222345566777665432 1269999999
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCc-EEEEEEcC
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN-TVNAFYYP 510 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr-~l~v~~~~ 510 (521)
.-|-.++....-.+ +.-+|++++.++|+|..|+..|+++.+++. .|+|+|..
T Consensus 437 ~~g~~vkafkff~k-------d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 437 EPGGQVKAFKFFQK-------DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred cCCceEEeeeecCC-------CcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 99987665443321 125899999999999999999999999876 99999964
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.81 E-value=6.5e-18 Score=158.13 Aligned_cols=190 Identities=22% Similarity=0.288 Sum_probs=133.9
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHH-HHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQV-MTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~-G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
..+.+||.|||+++.+++|+++|... |+|..+ .......++.+|+|.|+|+++|.+++|+ .||...+.|++
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yv-------eLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~ 115 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYV-------ELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRE 115 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEee-------eeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCce
Confidence 35679999999999999999999964 442211 0122234678999999999999999999 69999999999
Q ss_pred EEEeCCCCCCccccccC---CC------------------------------CC-----CCC--Cc-----------ccc
Q 009954 251 VRVRRPTDYNPTLAAAL---GP------------------------------GQ-----PSP--NL-----------NLA 279 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~---~~------------------------------~~-----~~~--~~-----------~~~ 279 (521)
|.|+...+.+...-... +. .. +.. .. +..
T Consensus 116 l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~ 195 (608)
T KOG4212|consen 116 LVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYN 195 (608)
T ss_pred EEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhh
Confidence 99985443221110000 00 00 000 00 000
Q ss_pred cccCC-----CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHH
Q 009954 280 AVGLA-----SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACA 354 (521)
Q Consensus 280 ~~~~~-----~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~ 354 (521)
..+.+ +--.-.+....++||.||...+....|++.|.-.|.|..|.+-.++ -|.++|||.|+|..+-+|..||.
T Consensus 196 lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 196 LFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred cccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHH
Confidence 00000 0000112334579999999999999999999999999999999997 57999999999999999999999
Q ss_pred HHcCCeeCCeEEEEEE
Q 009954 355 ALNGLKMGDKTLTVRR 370 (521)
Q Consensus 355 ~l~g~~~~g~~l~v~~ 370 (521)
.|++.-+..++..+..
T Consensus 275 ml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 275 MLDRQGLFDRRMTVRL 290 (608)
T ss_pred hhccCCCccccceeec
Confidence 9997666666666665
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.79 E-value=2.6e-18 Score=164.16 Aligned_cols=171 Identities=22% Similarity=0.283 Sum_probs=130.8
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~v 253 (521)
..-|.+.+||+.+|+++|.+||+.++.- ..++....++..|-|||+|.+.+++++||+.+-..+..+-|.|
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I~---------~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEV 80 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGIE---------NLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEV 80 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCcee---------EEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEE
Confidence 3468899999999999999999988531 1133334477789999999999999999999999999999999
Q ss_pred eCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCC
Q 009954 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDRDT 332 (521)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~ 332 (521)
-.+........-. +...........|.|++||+.||++||.+||+..-.|.. |.++.+ ..
T Consensus 81 f~~~~~e~d~~~~------------------~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~r 141 (510)
T KOG4211|consen 81 FTAGGAEADWVMR------------------PGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QR 141 (510)
T ss_pred EccCCcccccccc------------------CCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CC
Confidence 7543322211100 000001123457999999999999999999998766666 445555 46
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
+.+.|-|||+|++.+.|++||.. |...|+-+-|.|-.+..
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHH
Confidence 78999999999999999999985 77889999999987643
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=5.2e-18 Score=140.90 Aligned_cols=172 Identities=26% Similarity=0.369 Sum_probs=129.2
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC---CCeEEEEecCHHHHHHHH-HccCceec
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE---KKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
...++|||+|||.++.+.+|.++|.+||. |.++.+... ..||||+|+++.+|+.|+ .-+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~------------i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGR------------IREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcc------------eEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 34689999999999999999999999998 555554432 579999999999999999 79999999
Q ss_pred CceEEEeCCCCCCccccccCCCCCCCCCcccccc-cCCCC-C--CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE
Q 009954 248 GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAV-GLASG-A--IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHG 323 (521)
Q Consensus 248 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~ 323 (521)
|..|+|+++...-....... ..+-... +...+ . .....+..+|.|.+||++.+++||+++....|.|..
T Consensus 72 g~rLRVEfprggr~s~~~~G-------~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCf 144 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRG-------SYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCF 144 (241)
T ss_pred cceEEEEeccCCCccccccc-------ccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeee
Confidence 99999998776542211000 0000000 00000 0 111223457999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee--CCeEEEEE
Q 009954 324 FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVR 369 (521)
Q Consensus 324 v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~v~ 369 (521)
..+.+| |++.|+|...|+.+-|+..|+...+ .|....+.
T Consensus 145 adv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 145 ADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 999887 3799999999999999999988665 34444433
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=2.6e-19 Score=168.06 Aligned_cols=173 Identities=21% Similarity=0.378 Sum_probs=147.4
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~ 252 (521)
+.++|||++|++.++++.|+++|.+||++..|.+ +.+..+++++||+||+|.+++....+|......|.|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~v------m~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVV------MRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEE------eccCCCCCcccccceecCCCcchheeecccccccCCcccc
Confidence 6789999999999999999999999999776543 4555567889999999999999999998778889999999
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 332 (521)
+..+.......... ......+|||++||.++++++++++|++||.|..+.++.|..+
T Consensus 79 ~k~av~r~~~~~~~-----------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~ 135 (311)
T KOG4205|consen 79 PKRAVSREDQTKVG-----------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT 135 (311)
T ss_pred ceeccCcccccccc-----------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc
Confidence 98765544321100 0112357999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCC
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASG 375 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (521)
..++||+||.|.+.+.+.+++. ..-+.|.|+.|.|..|.++.
T Consensus 136 ~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 136 SRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred cccccceeeEeccccccceecc-cceeeecCceeeEeeccchh
Confidence 9999999999999999999987 47899999999999997743
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2e-18 Score=151.56 Aligned_cols=83 Identities=28% Similarity=0.502 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..|+|||-.||.+..+.+|...|-+||.|.+.+|..|..|+.+|+|+||.|.++.+|+.||.+|||+.|+-+.|+|..-.
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 009954 373 ASG 375 (521)
Q Consensus 373 ~~~ 375 (521)
++.
T Consensus 364 Pkd 366 (371)
T KOG0146|consen 364 PKD 366 (371)
T ss_pred ccc
Confidence 654
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.76 E-value=5.8e-17 Score=148.94 Aligned_cols=282 Identities=18% Similarity=0.188 Sum_probs=188.3
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHH---ccCceecCce
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA---LDGIIFEGVA 250 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~---l~g~~~~g~~ 250 (521)
+--|+|.+|-..++|.+|.+.++.||. +.-+.....+..|.|+|++.+.|..++. -+...+.|++
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~------------i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGP------------IAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCc------------eEEEEeccccceeeeeeccccchhhheehhccCcccccCch
Confidence 446999999999999999999999998 5556666778899999999999999983 4667788888
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCe-EE--EcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR-VF--VGGLPYYFTETQIKELLESFGTLHGFDLV 327 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~--v~nLp~~~te~~l~~~F~~~G~i~~v~i~ 327 (521)
..++++....-.. + + .....++. |. |-|--+.+|-+-|..++...|+|..|.|+
T Consensus 99 Al~NyStsq~i~R--------~-------------g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIf 155 (494)
T KOG1456|consen 99 ALFNYSTSQCIER--------P-------------G--DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIF 155 (494)
T ss_pred hhcccchhhhhcc--------C-------------C--CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEE
Confidence 8887753221110 0 0 01122233 33 55656779999999999999999999888
Q ss_pred ecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee--CCeEEEEEEccCCCCCchHHHHH-H------------------H
Q 009954 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATASGQSKTEQESI-L------------------A 386 (521)
Q Consensus 328 ~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~v~~~~~~~~~~~~~~~~-~------------------~ 386 (521)
+. +|. -|.|||.+.+.|++|..+|||.-| +-++|+|.||++........+.. . .
T Consensus 156 kk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~ 230 (494)
T KOG1456|consen 156 KK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYD 230 (494)
T ss_pred ec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCc
Confidence 76 454 599999999999999999999665 56899999998821111100000 0 0
Q ss_pred HHHHHHHHHHHhhhccC-C--------CCCCCCC--------------CCC-CCCcceEEEeeCcCCcccCCChHHHHHH
Q 009954 387 QAQQHIAIQKMALQTSG-M--------NTLGGGM--------------SLF-GETLAKVLCLTEAITADALADDEEYEEI 442 (521)
Q Consensus 387 ~~~~~~~~~~~~~~~~~-~--------~~~~~~~--------------~~~-~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 442 (521)
...+..........-.+ . ..++.+. +.. ...+..|+.+..+ +...+..
T Consensus 231 r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGL-dh~k~N~------- 302 (494)
T KOG1456|consen 231 RQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGL-DHGKMNC------- 302 (494)
T ss_pred cccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEec-cccccch-------
Confidence 00000000000000000 0 0000000 111 1122223222222 1222221
Q ss_pred HHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 443 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 443 ~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
+.|..+|+.||+|+.|++++.++ |.|+|++.+..+.++|+..|||..+-|.+|.|-+....
T Consensus 303 -drlFNl~ClYGNV~rvkFmkTk~--------gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 303 -DRLFNLFCLYGNVERVKFMKTKP--------GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred -hhhhhhhhhcCceeeEEEeeccc--------ceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 58999999999999999999762 67899999999999999999999999999999875543
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.75 E-value=4e-17 Score=141.73 Aligned_cols=185 Identities=21% Similarity=0.317 Sum_probs=141.2
Q ss_pred CCeEEEeCCCccCcHHHHHH----HHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 174 ARRVYVGGLPPLANEQAIAT----FFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~----~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
..||||.||+..+..++|+. +|++||.|+. |....+.+-+|-|||.|.+.+.|..|+ +|+|..+.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ild---------I~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD---------ISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEE---------EEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 34999999999999999887 9999998543 556667788999999999999999999 899999999
Q ss_pred ceEEEeCCCCCCccccccCC---CCCC----------------CCCccc-ccccCCCC-CCCCCCCCCeEEEcCCCCCCC
Q 009954 249 VAVRVRRPTDYNPTLAAALG---PGQP----------------SPNLNL-AAVGLASG-AIGGAEGPDRVFVGGLPYYFT 307 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~~~~~---~~~~----------------~~~~~~-~~~~~~~~-~~~~~~~~~~l~v~nLp~~~t 307 (521)
+.|+|+|+...........+ ...+ ...... ......+. ......+...||+.|||..++
T Consensus 80 K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~ 159 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESE 159 (221)
T ss_pred chhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchh
Confidence 99999998876554332111 0000 000000 00000000 011233445699999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC-CeEEEEEEcc
Q 009954 308 ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRAT 372 (521)
Q Consensus 308 e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~ 372 (521)
.+.|..+|.+|.....|+++... .+.|||+|.+...|..|...|.|..|. ...+.|.++.
T Consensus 160 ~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 160 SEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999999988753 568999999999999999999998886 8888888874
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=4.2e-17 Score=138.30 Aligned_cols=83 Identities=23% Similarity=0.554 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|+|..|.|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
...
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 763
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=3.3e-16 Score=136.10 Aligned_cols=195 Identities=17% Similarity=0.274 Sum_probs=135.1
Q ss_pred CeEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 295 DRVFVGGLPYYFTETQIKE----LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~----~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
.||||.||+..+..++|+. +|++||.|.+|...+ +...+|-|||.|.+.+.|..|+.+|+|+.|.|+.++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999998877 999999999998765 567799999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHHH-----HHH--HHHHhhhccCCCCCCCCC--C--CCCCCcceEEEeeCcCCcccCCChHHH
Q 009954 371 ATASGQSKTEQESILAQAQQ-----HIA--IQKMALQTSGMNTLGGGM--S--LFGETLAKVLCLTEAITADALADDEEY 439 (521)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~--~--~~~~~~~~v~~l~~~~~~~~~~~~~~~ 439 (521)
|+.+..........+..... ... .+.........+++.... | .....+..++.+.++....
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es-------- 158 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSES-------- 158 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcch--------
Confidence 98732221111100000000 000 000000000001111111 1 1223445555555554443
Q ss_pred HHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeC-CcEEEEEEcC
Q 009954 440 EEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYP 510 (521)
Q Consensus 440 ~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~-gr~l~v~~~~ 510 (521)
..+.|..+|+.|.-...|.++... .++|||+|.+...|..|.+.|+|..|- ..++.+.|+.
T Consensus 159 --~~e~l~~lf~qf~g~keir~i~~~--------~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 159 --ESEMLSDLFEQFPGFKEIRLIPPR--------SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred --hHHHHHHHHhhCcccceeEeccCC--------CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 225778888888888888887754 279999999999999999999999997 8888888764
No 54
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=4.7e-16 Score=143.48 Aligned_cols=290 Identities=19% Similarity=0.212 Sum_probs=189.4
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE-ecCCCCeEEEEecCHHHHHHHHHccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY-INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
...-|...+||+..++.+|..||+..-.. .+...++.. .+...|.|.|.|.+.|.-+.|++-+...+.++.|
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia-------~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryi 131 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIA-------NGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYI 131 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhcc-------ccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCce
Confidence 34456788999999999999999876332 122233333 3556799999999999999999988888999999
Q ss_pred EEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC----CeeEEEEe
Q 009954 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG----TLHGFDLV 327 (521)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G----~i~~v~i~ 327 (521)
.|-.+.....-.-+..+...+.+-. ..+..-.|.+++||+++++.++.++|.+.- ..+.|-++
T Consensus 132 evYka~ge~f~~iagg~s~e~~~fl-------------sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV 198 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSNEAAPFL-------------SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV 198 (508)
T ss_pred eeeccCchhheEecCCccccCCCCC-------------CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE
Confidence 9965443222111110000000000 001122477999999999999999997432 34455555
Q ss_pred ecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhc------
Q 009954 328 KDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQT------ 401 (521)
Q Consensus 328 ~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 401 (521)
+.+ +|+.+|-|||.|..+++|+.||.. |...|+.+.|.+-.++. .+..+-+....
T Consensus 199 ~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTa-----------------aEvqqvlnr~~s~pLi~ 259 (508)
T KOG1365|consen 199 TRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTA-----------------AEVQQVLNREVSEPLIP 259 (508)
T ss_pred ECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhH-----------------HHHHHHHHhhccccccC
Confidence 553 799999999999999999999985 55555555544443321 01111111111
Q ss_pred --cCCCCCCCCCCCCCCCc-ceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccc-eeE--EEecCCCCCCCCCCCcc
Q 009954 402 --SGMNTLGGGMSLFGETL-AKVLCLTEAITADALADDEEYEEILEDMREECGKYGT-LVN--VVIPRPDQNGGETPGVG 475 (521)
Q Consensus 402 --~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~-I~~--v~i~~~~~~~~~~~g~g 475 (521)
...-.++.+....++.. ..|+.|..+ +|+.+++||-.||..|-. |.. |.+..+. .|.+ .|
T Consensus 260 ~~~sp~~p~~p~~~~p~~~~kdcvRLRGL----------Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrP---SG 325 (508)
T KOG1365|consen 260 GLTSPLLPGGPARLVPPTRSKDCVRLRGL----------PYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRP---SG 325 (508)
T ss_pred CCCCCCCCCCccccCCCCCCCCeeEecCC----------ChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCc---Ch
Confidence 11111122222222222 446665544 677788999999999885 333 6666655 6666 49
Q ss_pred EEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcc
Q 009954 476 KVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 476 ~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~ 515 (521)
.|||+|.+.++|..|...-+......|.|.|-.+.-++..
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELN 365 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHH
Confidence 9999999999999999999998888999999887766554
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.67 E-value=3.3e-15 Score=128.24 Aligned_cols=180 Identities=22% Similarity=0.316 Sum_probs=121.5
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC----CCCeEEEEecCHHHHHHHH-HccC
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAM-ALDG 243 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~a~~A~-~l~g 243 (521)
+.....++|||.|||.++...+|..+|..|--..++ .+. .+.+ .+.+|||.|.+...|..|+ .|||
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgs--------lLK-~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGS--------LLK-YTSKGDQVCKPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccce--------eee-eccCCCccccceEEEEecchHHHHHHHHHhcC
Confidence 445568999999999999999999999988321111 111 1222 3479999999999999999 7999
Q ss_pred ceec---CceEEEeCCCCCCccccccCCC-CCCCCCccc-----------------------------------------
Q 009954 244 IIFE---GVAVRVRRPTDYNPTLAAALGP-GQPSPNLNL----------------------------------------- 278 (521)
Q Consensus 244 ~~~~---g~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~----------------------------------------- 278 (521)
+.|+ +..|+|..++............ +.+.+....
T Consensus 100 vrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~ 179 (284)
T KOG1457|consen 100 VRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTK 179 (284)
T ss_pred eeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccc
Confidence 9986 5778887655422211110000 000000000
Q ss_pred -----ccccC----------CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEE
Q 009954 279 -----AAVGL----------ASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVY 343 (521)
Q Consensus 279 -----~~~~~----------~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f 343 (521)
+.... +.....+...+.+|||.||.++++|++|+.+|+.|-....++|-.. .|. .+|||+|
T Consensus 180 ~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~ 255 (284)
T KOG1457|consen 180 SEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADF 255 (284)
T ss_pred hhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecH
Confidence 00000 0011122334568999999999999999999999988877776543 333 4799999
Q ss_pred cChHHHHHHHHHHcCCee
Q 009954 344 QDPAVTDIACAALNGLKM 361 (521)
Q Consensus 344 ~~~~~A~~Al~~l~g~~~ 361 (521)
++.+.|..||..|.|..|
T Consensus 256 ~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 256 EEIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHHhhccee
Confidence 999999999999999776
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=4.5e-15 Score=123.59 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=127.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||.++-+.+|.++|.+||.|..|.|...+ ...+||||+|+++.+|+.||..-+|..+.|+.|.|.++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 34789999999999999999999999999999987653 235799999999999999999999999999999999997
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCC-----CCCCCCCCcceEEE--eeCcCCcccCCChHHHHHHHHH
Q 009954 373 ASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGG-----GMSLFGETLAKVLC--LTEAITADALADDEEYEEILED 445 (521)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~--l~~~~~~~~~~~~~~~~~~~~d 445 (521)
-........ -...+....|. ..|..--..-.|++ |+..-+. +|
T Consensus 82 ggr~s~~~~-----------------G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSW-------------QD 131 (241)
T KOG0105|consen 82 GGRSSSDRR-----------------GSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSW-------------QD 131 (241)
T ss_pred CCCcccccc-----------------cccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCch-------------HH
Confidence 522110000 00000000010 11111112233333 3333222 58
Q ss_pred HHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCee--CCcEEEEEEcCCCCcccc
Q 009954 446 MREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF--GGNTVNAFYYPEDKYFNK 517 (521)
Q Consensus 446 l~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~--~gr~l~v~~~~~~~~~~~ 517 (521)
|+++.-+-|.|-...+.++. ...|+|.+.|+.+.|+..|....+ .|-+.-+.........++
T Consensus 132 LKDHmReaGdvCfadv~rDg----------~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~~~ 195 (241)
T KOG0105|consen 132 LKDHMREAGDVCFADVQRDG----------VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRDQG 195 (241)
T ss_pred HHHHHHhhCCeeeeeeeccc----------ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCccc
Confidence 99999999999999998873 449999999999999999998776 455554444444433433
No 57
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.62 E-value=1.2e-13 Score=127.30 Aligned_cols=299 Identities=15% Similarity=0.138 Sum_probs=187.3
Q ss_pred EeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCCeEEEEecCHHHHHHHH-HccCceecC--ceEEEe
Q 009954 179 VGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAM-ALDGIIFEG--VAVRVR 254 (521)
Q Consensus 179 v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--~~i~v~ 254 (521)
|-|--+.+|-+-|..+....|+ |..+.+- +..-.|.|+|.+.+.|++|. .|||..|.. ..|+|.
T Consensus 127 IlNp~YpItvDVly~Icnp~Gk------------VlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGK------------VLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred eecCccccchhhhhhhcCCCCc------------eEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 4454456899999999999887 4444444 34447999999999999999 799988754 678888
Q ss_pred CCCCCCcc--------c----cccCCCCCCCCC---------------cccc--ccc-----------------------
Q 009954 255 RPTDYNPT--------L----AAALGPGQPSPN---------------LNLA--AVG----------------------- 282 (521)
Q Consensus 255 ~~~~~~~~--------~----~~~~~~~~~~~~---------------~~~~--~~~----------------------- 282 (521)
++++..-. + ....++-.+..+ .++. ..+
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 76631100 0 000000000000 0000 000
Q ss_pred -CCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCe
Q 009954 283 -LASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK 360 (521)
Q Consensus 283 -~~~~~~~~~~~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~ 360 (521)
.....+++......+.|.+|... +.-+.|..+|-.||.|+.|++++.+ .|.|.||+.+..+.++|+..||+..
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~ 349 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIP 349 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCc
Confidence 00111123344567899999877 5678899999999999999999875 4679999999999999999999999
Q ss_pred eCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHH
Q 009954 361 MGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKM-ALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEY 439 (521)
Q Consensus 361 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~ 439 (521)
+.|.+|.|.+++......-+.....+.. ...... ...+.....++.+.-.-...+++|+..-|..-.-
T Consensus 350 lfG~kl~v~~SkQ~~v~~~~pflLpDgS---pSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~v-------- 418 (494)
T KOG1456|consen 350 LFGGKLNVCVSKQNFVSPVQPFLLPDGS---PSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGV-------- 418 (494)
T ss_pred cccceEEEeeccccccccCCceecCCCC---cchhhcccccccccCChhHhhcccccCCcceeEEecCCCcc--------
Confidence 9999999999875222211000000000 000000 1111112233333333344667777766543221
Q ss_pred HHHHHHHHHhhccccc-eeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCc------EEEEEEcCCC
Q 009954 440 EEILEDMREECGKYGT-LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN------TVNAFYYPED 512 (521)
Q Consensus 440 ~~~~~dl~~~f~~fG~-I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr------~l~v~~~~~~ 512 (521)
+++.|.++|..-+. -.+|+|...+..... .| .++|++.++|..||..+|-..|.+. +|++-|.+..
T Consensus 419 --tEe~l~~i~nek~v~~~svkvFp~kserSs---sG--llEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 419 --TEEQLIGICNEKDVPPTSVKVFPLKSERSS---SG--LLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred --CHHHHHHHhhhcCCCcceEEeecccccccc---cc--eeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 22577788776553 566777665533332 36 9999999999999999999998774 5666665543
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=5.6e-15 Score=110.06 Aligned_cols=70 Identities=27% Similarity=0.644 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 297 l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
|||+|||..+++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 5899999999999999999999999999999999885
No 59
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.60 E-value=1.3e-15 Score=143.12 Aligned_cols=175 Identities=19% Similarity=0.322 Sum_probs=137.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||++|+..++++.|++.|.+||.|..+.+++++.++.++||+||+|++++....+|.. .-+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 447899999999999999999999999999999999999999999999999999999988874 5688999999999886
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcc
Q 009954 373 ASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 452 (521)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~ 452 (521)
+....... .. -...-+|++-....+. .++++++.|++
T Consensus 84 ~r~~~~~~----~~----------------------------~~~tkkiFvGG~~~~~-----------~e~~~r~yfe~ 120 (311)
T KOG4205|consen 84 SREDQTKV----GR----------------------------HLRTKKIFVGGLPPDT-----------TEEDFKDYFEQ 120 (311)
T ss_pred Cccccccc----cc----------------------------ccceeEEEecCcCCCC-----------chHHHhhhhhc
Confidence 52211000 00 0011223332222222 22599999999
Q ss_pred ccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcc
Q 009954 453 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 453 fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~ 515 (521)
||.|..+.++.|..+..+ .|++||.|.+.+.+.+++. ...+.|+|+.|.|--+.+++..
T Consensus 121 ~g~v~~~~~~~d~~~~~~---rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 121 FGKVADVVIMYDKTTSRP---RGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cceeEeeEEeeccccccc---ccceeeEeccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 999999999999876554 4566999999999999988 5899999999999887766544
No 60
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.1e-15 Score=132.80 Aligned_cols=165 Identities=21% Similarity=0.312 Sum_probs=126.3
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEE
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v 253 (521)
..|||++||+.+.+.+|..||..||.+. ++.+ ..||+||+|.+..+|.-|+ .+|+..|.|..+.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~------------d~~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIP------------DADM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccc------------ccee--ecccceeccCchhhhhcccchhcCceecceeeee
Confidence 3699999999999999999999999853 2222 3578899999999999999 89999999988888
Q ss_pred eCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC
Q 009954 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333 (521)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g 333 (521)
.++....... +.+....... ...-...+....+.|+|.+++..+.+.+|.+.|.++|.+....+
T Consensus 68 e~~r~~~~~~----g~~~~g~r~~-----~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------- 131 (216)
T KOG0106|consen 68 EHARGKRRGR----GRPRGGDRRS-----DSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------- 131 (216)
T ss_pred eccccccccc----CCCCCCCccc-----hhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------
Confidence 8876433221 0011000000 00001112344567999999999999999999999999965544
Q ss_pred CcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 334 ~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
..+++||+|.+.++|.+||..|+|..+.|+.|.+..
T Consensus 132 -~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 132 -RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred -hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 245799999999999999999999999999999943
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=9e-15 Score=127.65 Aligned_cols=81 Identities=28% Similarity=0.437 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
...+|.|.||+.+++|++|.++|.+||.|..|.|.++++||.++|||||.|.+.++|++||+.|||+-+..-.|.|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
+
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 6
No 62
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.57 E-value=4.1e-14 Score=129.56 Aligned_cols=194 Identities=17% Similarity=0.154 Sum_probs=133.3
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE---ecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~---~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
...|||.|||.++|-+++.++|++||.|...... +++-+.+. -+.-+|-|.+.|.-.+++..|+ -|++..|.|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t--~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQT--GEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCC--CCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4569999999999999999999999987543211 11222222 2345799999999999999999 5999999999
Q ss_pred eEEEeCCCCCCccccccCC----CCCCCCC---cccccccCCCCC--CCCCCCCCeEEEcCCCCC----CC-------HH
Q 009954 250 AVRVRRPTDYNPTLAAALG----PGQPSPN---LNLAAVGLASGA--IGGAEGPDRVFVGGLPYY----FT-------ET 309 (521)
Q Consensus 250 ~i~v~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~l~v~nLp~~----~t-------e~ 309 (521)
.|+|+.++-.....-.... ...+... ...-..+..+.. ..-....++|.|.||-.. .+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999876522111000000 0000000 000000111111 122345578999998432 22 36
Q ss_pred HHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 310 QIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 310 ~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
+|.+.+++||.|..|.|.-. .+.|.+-|.|.+.++|..||+.|+|.+|+|++|......-
T Consensus 292 dl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 78889999999999988743 3578899999999999999999999999999999987644
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=7.5e-15 Score=129.27 Aligned_cols=161 Identities=22% Similarity=0.375 Sum_probs=121.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCC
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASG 375 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (521)
.|||++||+.+.+.+|..+|..||.|..|.+.. ||+||+|.+..+|.-|+..|+|..|.|..+.|.|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 699999999999999999999999999998764 489999999999999999999999999889999987521
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhccCCCCCC-----CCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhh
Q 009954 376 QSKTEQESILAQAQQHIAIQKMALQTSGMNTLG-----GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREEC 450 (521)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f 450 (521)
-.. +..++| ...-..+....+.+++.+..+. .-+++|.+.|
T Consensus 75 ~~~------------------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r----------~~~qdl~d~~ 120 (216)
T KOG0106|consen 75 RGR------------------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLR----------VSWQDLKDHF 120 (216)
T ss_pred ccc------------------------CCCCCCCccchhhccCCcccccceeeeccchhh----------hhHHHHhhhh
Confidence 110 011111 0011111123334444333222 1236999999
Q ss_pred ccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 451 GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 451 ~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
+.+|.+....++. +.+||+|.+.++|.+||..|+|..+.|+.|++...
T Consensus 121 ~~~g~~~~~~~~~-----------~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 121 RPAGEVTYVDARR-----------NFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cccCCCchhhhhc-----------cccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 9999996665533 56699999999999999999999999999999443
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=4.8e-14 Score=104.90 Aligned_cols=70 Identities=27% Similarity=0.580 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 297 l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
|+|+|||+.+++++|+++|+.||.|..+.+..++. |..+|+|||+|.+.++|.+|++.++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999874
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.4e-14 Score=111.97 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+||...++|++|.++|+++|.|..|.+-.|+.+..+.|||||+|.+.++|..||+-++|..+..++|.|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999974
No 66
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.53 E-value=1.9e-14 Score=122.14 Aligned_cols=83 Identities=24% Similarity=0.434 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
.++...|.|-||-+-|+.++|+.+|++||.|-+|.|+.|+-|+.++|||||.|....+|+.|+++|+|.+|.|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
|.-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 865
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.52 E-value=9.5e-14 Score=139.53 Aligned_cols=76 Identities=20% Similarity=0.420 Sum_probs=70.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
...++|||||+|+..+++.+|.++|+.||. |..+.+...+|||||.+.+..+|.+|| +|+...+.++
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGe------------iqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k 485 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGE------------IQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADK 485 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhccc------------ceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccce
Confidence 455789999999999999999999999998 788888999999999999999999999 7999999999
Q ss_pred eEEEeCCCC
Q 009954 250 AVRVRRPTD 258 (521)
Q Consensus 250 ~i~v~~~~~ 258 (521)
.|+|.|+..
T Consensus 486 ~Iki~Wa~g 494 (894)
T KOG0132|consen 486 TIKIAWAVG 494 (894)
T ss_pred eeEEeeecc
Confidence 999999643
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.51 E-value=5.1e-13 Score=125.65 Aligned_cols=198 Identities=17% Similarity=0.277 Sum_probs=132.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 295 DRVFVGGLPYYFTETQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
+.+||.|||+++-|++|+++|. +.|.|+.|.|..| .+|+++|+|.|||+++|.+++|++.||.+.+.|++|.|.-...
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 4599999999999999999999 8999999999999 5899999999999999999999999999999999999987654
Q ss_pred CCCCchHHHH-----HH-----------------------------------HHHHHHHHHHHHhhhccCCCCCCCCC--
Q 009954 374 SGQSKTEQES-----IL-----------------------------------AQAQQHIAIQKMALQTSGMNTLGGGM-- 411 (521)
Q Consensus 374 ~~~~~~~~~~-----~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-- 411 (521)
.......+.. .+ ........+.+.-....+.+..+...
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 1100000000 00 00000000000000000000000000
Q ss_pred -----CCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHH
Q 009954 412 -----SLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVG 486 (521)
Q Consensus 412 -----~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~ 486 (521)
-..++...++++ .++-|..=-..|++.|.--|.|+.|.+--++ .+.. .|+|.++|.++-+
T Consensus 204 lr~~h~f~pPl~~k~fv-----------anl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s---~G~~vi~y~hpve 268 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFV-----------ANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNS---RGFAVIEYDHPVE 268 (608)
T ss_pred hhhccCCCCCccceeee-----------eccccccchHHHHHHhccceeeeeeceeecc-cccc---CCeeEEEecchHH
Confidence 001122222222 2222222225899999999999999887777 3443 4789999999999
Q ss_pred HHHHHHHHhCCeeCCcEEEEEE
Q 009954 487 CATAKNALSGRKFGGNTVNAFY 508 (521)
Q Consensus 487 A~~Ai~~lng~~~~gr~l~v~~ 508 (521)
|..||..|++.-+..++..+.+
T Consensus 269 avqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 269 AVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHHHHHhhccCCCccccceeec
Confidence 9999999998777888877776
No 69
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1e-13 Score=125.96 Aligned_cols=84 Identities=29% Similarity=0.601 Sum_probs=77.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 288 IGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 288 ~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
......+++|+|.|||+..-+-||+.+|.+||.|.+|.|+.+ ...||||+||.|+++++|++|.++|||..+.|++|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 334567789999999999999999999999999999999987 466899999999999999999999999999999999
Q ss_pred EEEccC
Q 009954 368 VRRATA 373 (521)
Q Consensus 368 v~~~~~ 373 (521)
|.-++.
T Consensus 168 Vn~ATa 173 (376)
T KOG0125|consen 168 VNNATA 173 (376)
T ss_pred Eeccch
Confidence 999876
No 70
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.50 E-value=4.7e-13 Score=128.52 Aligned_cols=171 Identities=16% Similarity=0.281 Sum_probs=123.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
...|.+++||.++|++||.+||+.+ .|.++.+.+. +|+..|-|||+|.+.|++++||+ ++-..++.+-|.|--+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 3568899999999999999999998 4777766665 89999999999999999999999 588889999999988755
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccc
Q 009954 374 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 453 (521)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~f 453 (521)
+... ......+.+ . ..+-.|+.|-.+ +|.-+++||.+||+.-
T Consensus 86 ~e~d-------------------~~~~~~g~~--------s-~~~d~vVRLRGL----------Pfscte~dI~~FFaGL 127 (510)
T KOG4211|consen 86 AEAD-------------------WVMRPGGPN--------S-SANDGVVRLRGL----------PFSCTEEDIVEFFAGL 127 (510)
T ss_pred cccc-------------------ccccCCCCC--------C-CCCCceEEecCC----------CccCcHHHHHHHhcCC
Confidence 2210 000000000 0 023334444333 1112235999999976
Q ss_pred cceeE-EEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCC
Q 009954 454 GTLVN-VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 454 G~I~~-v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~ 511 (521)
=.|.. |.++.+. .+.+ .|-|||+|++.+.|++|+.. |...|+-|-|.|--...
T Consensus 128 ~Iv~~gi~l~~d~-rgR~---tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 128 EIVPDGILLPMDQ-RGRP---TGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred cccccceeeeccC-CCCc---ccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHH
Confidence 55555 4455544 4444 58999999999999999996 88889999988865443
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.5e-13 Score=123.45 Aligned_cols=82 Identities=27% Similarity=0.506 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
++.+||||+-|+++++|..|+..|+.||+|+.|.|+.+..||.++|||||+|+++-+..+|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 54
No 72
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.49 E-value=9.5e-14 Score=117.83 Aligned_cols=85 Identities=19% Similarity=0.377 Sum_probs=71.0
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
.....++|||+|||+.+|+++|+++|.+||.|..+. ++.+..++.++|||||+|.+.++|+.|+ .||+..|.|
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAK------VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345567899999999999999999999999864421 1334445678999999999999999999 699999999
Q ss_pred ceEEEeCCCCCC
Q 009954 249 VAVRVRRPTDYN 260 (521)
Q Consensus 249 ~~i~v~~~~~~~ 260 (521)
+.|+|.++....
T Consensus 104 r~l~V~~a~~~~ 115 (144)
T PLN03134 104 RHIRVNPANDRP 115 (144)
T ss_pred EEEEEEeCCcCC
Confidence 999999876543
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=8.8e-14 Score=115.31 Aligned_cols=75 Identities=21% Similarity=0.431 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+||+..+++.||..+|..||+|.+|+|...+ .|||||||+++.+|..|+..|+|..|.|..|+|+.++-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4689999999999999999999999999999998864 78999999999999999999999999999999999865
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.2e-13 Score=123.29 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=70.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|..||. |+|..|.|+.|.|.++..
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 6899999999999999999999999999999998753 47899999999999999996 999999999999999875
No 75
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=5.5e-15 Score=122.86 Aligned_cols=82 Identities=33% Similarity=0.662 Sum_probs=77.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCC
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASG 375 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (521)
-|||+|||+.+||.||...|++||.|++|.|++|+.||.++||||+.|++.-+...|+..|||..|.|+.|+|.......
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk 116 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYK 116 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999886644
Q ss_pred CC
Q 009954 376 QS 377 (521)
Q Consensus 376 ~~ 377 (521)
.+
T Consensus 117 ~p 118 (219)
T KOG0126|consen 117 KP 118 (219)
T ss_pred CC
Confidence 33
No 76
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2.9e-13 Score=101.81 Aligned_cols=79 Identities=23% Similarity=0.481 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
+...-|||.|||..+|.++..++|.+||.|..|+|-..++ .+|.|||.|++..+|.+|+..|+|..+.++.+.|.|.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4446799999999999999999999999999999987654 4889999999999999999999999999999999998
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
++
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 65
No 77
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.47 E-value=5e-12 Score=125.56 Aligned_cols=193 Identities=12% Similarity=0.047 Sum_probs=136.6
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
.+.+.+-+.+++++..+.++++||...-. .... +.......+ .|-++|+|.....+++|+.-|...+-.+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~~-------~~~~-l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~ 380 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRNA-------QSTD-LSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRP 380 (944)
T ss_pred chhheeeecccccccccchhhhhcCcccc-------cccc-hhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcc
Confidence 45667888899999999999999885421 1111 222233334 79999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCCCCCC--CCCcccccc------cCCCCCC--CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC
Q 009954 251 VRVRRPTDYNPTLAAALGPGQP--SPNLNLAAV------GLASGAI--GGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~--~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~ 320 (521)
+.|..+.......+.......+ ....+.+.. ...++.. .......+|||..||..+++.++.++|...-.
T Consensus 381 ~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~ 460 (944)
T KOG4307|consen 381 FQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAA 460 (944)
T ss_pred eeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhh
Confidence 9998766544432221111111 000000000 0001111 22334568999999999999999999998777
Q ss_pred eeE-EEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 321 LHG-FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 321 i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
|++ |.|...+ ++..++.|||+|..++++.+|+..-+.++++.+.|+|.-...
T Consensus 461 Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 461 VEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred hhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 776 6666664 788899999999999999999988888999999999997765
No 78
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.2e-13 Score=109.07 Aligned_cols=82 Identities=28% Similarity=0.420 Sum_probs=78.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
..|||.++...++|++|.+.|..||.|+.|.|..|..||-.+|||+|+|++.++|++|+..|||..|.|..|.|.|+-.+
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CC
Q 009954 375 GQ 376 (521)
Q Consensus 375 ~~ 376 (521)
+.
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 43
No 79
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.4e-13 Score=118.54 Aligned_cols=80 Identities=26% Similarity=0.542 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+||+..+..+.|+++|++||.|+.+.|+.|+.+|+++||+||.|.+.+.|.+|++. ..-.|+||...|..|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 346799999999999999999999999999999999999999999999999999999999985 3467899998888876
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=2.5e-12 Score=124.26 Aligned_cols=80 Identities=35% Similarity=0.710 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
..+|||+|||..+++++|.++|..||.|..|.+..+..+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999999753
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.40 E-value=3.3e-12 Score=109.96 Aligned_cols=82 Identities=24% Similarity=0.339 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC---CeEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD-RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTLT 367 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~l~ 367 (521)
...+||||.+||.++...+|+.+|..|-..+...|... +.....+-+|||.|.+..+|..|+++|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999877777665443 222334579999999999999999999999984 88999
Q ss_pred EEEccC
Q 009954 368 VRRATA 373 (521)
Q Consensus 368 v~~~~~ 373 (521)
|.+++.
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 999876
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=2.3e-12 Score=96.11 Aligned_cols=72 Identities=39% Similarity=0.691 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
+|+|+|||..+++++|.++|.+||.|..+.+..++ +.++|+|||+|.+.++|..|++.|+|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7788999999999999999999999999999998873
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.39 E-value=2.5e-12 Score=114.48 Aligned_cols=75 Identities=15% Similarity=0.260 Sum_probs=69.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.+|||+||++.+|+++|+++|+.||.|.+|.|+.+. ...|||||+|.++++|..|+. |+|..|.++.|.|.....
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 689999999999999999999999999999999884 446899999999999999996 999999999999998764
No 84
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.6e-12 Score=124.25 Aligned_cols=76 Identities=17% Similarity=0.351 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCh--HHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDP--AVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~--~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
..+|||+||++.++++||..+|+.||.|..|.|++ .+| +|||||+|.+. .++.+||..|||..+.|+.|+|..|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 35899999999999999999999999999999995 477 99999999988 7899999999999999999999999
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 76
No 85
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=3.2e-12 Score=90.17 Aligned_cols=56 Identities=23% Similarity=0.438 Sum_probs=51.0
Q ss_pred HHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 446 MREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 446 l~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
|.++|++||+|.+|.+.... .++|||+|.+.++|..|++.|||..|+|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998864 278999999999999999999999999999999985
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=3.2e-12 Score=94.90 Aligned_cols=71 Identities=38% Similarity=0.700 Sum_probs=67.0
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 299 VGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 299 v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|++.|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999987789999999999999999999999999999999998873
No 87
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.32 E-value=5.8e-12 Score=114.18 Aligned_cols=76 Identities=25% Similarity=0.358 Sum_probs=66.9
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec---CCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN---HEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
.++|||+|||+.+|+++|+++|+.||. |.++.+. ..+|||||+|.+.++|..||.|+|..|.|+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~------------I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGD------------IEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 468999999999999999999999998 4444443 2479999999999999999999999999999
Q ss_pred EEEeCCCCCCc
Q 009954 251 VRVRRPTDYNP 261 (521)
Q Consensus 251 i~v~~~~~~~~ 261 (521)
|.|.++..+..
T Consensus 72 V~Vt~a~~~~~ 82 (260)
T PLN03120 72 VTITPAEDYQL 82 (260)
T ss_pred EEEEeccCCCC
Confidence 99998776654
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1.9e-11 Score=91.63 Aligned_cols=74 Identities=38% Similarity=0.689 Sum_probs=68.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
+|+|+|||..+++++|.++|..||.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987644 7789999999999999999999999999999999874
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=1.2e-11 Score=91.53 Aligned_cols=62 Identities=15% Similarity=0.287 Sum_probs=55.6
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeecCCC--CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 308 ETQIKELLE----SFGTLHGFD-LVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 308 e~~l~~~F~----~~G~i~~v~-i~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
+++|.++|+ +||.|..|. |+.++.+ +.++|+|||+|.+.++|.+|++.|||..+.|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 577888888 999999995 7776666 9999999999999999999999999999999999863
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.30 E-value=4.2e-12 Score=108.05 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 436 DEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 436 ~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
|+.|.|+-++|+.+|++||.|-+|.|+.+..+... .|||||.|....||+.|+.+|.|..|+|+.|+|+++-..
T Consensus 20 NLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~s---RgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 20 NLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQS---RGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred ceeccCCHHHHHHHHHHhCcccceecccccccccc---cceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 44455555799999999999999999999988876 688899999999999999999999999999999997543
No 91
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=5.8e-12 Score=124.03 Aligned_cols=79 Identities=37% Similarity=0.693 Sum_probs=77.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
+.|||+|+|+++++++|.++|+..|.|.+++++.|++||.++|||||+|.+.++|..|+..|||..+.|+.|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999976
No 92
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=1.5e-11 Score=86.66 Aligned_cols=56 Identities=23% Similarity=0.486 Sum_probs=51.1
Q ss_pred HHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 311 IKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 311 l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
|.++|++||.|..|.+.... +++|||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997763 579999999999999999999999999999999986
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2e-12 Score=110.92 Aligned_cols=81 Identities=21% Similarity=0.410 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||++|...++|.-|...|-+||.|++|+++.|-++++.+|||||+|.-.|+|..||..||+..|.|+.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
+
T Consensus 89 P 89 (298)
T KOG0111|consen 89 P 89 (298)
T ss_pred C
Confidence 8
No 94
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=1.4e-11 Score=112.36 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=68.8
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe----cCCCCeEEEEecCHHHHHHHH-HccC
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAM-ALDG 243 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~----~~~~g~afV~f~~~~~a~~A~-~l~g 243 (521)
......+.|+|.|||+..-+.||+.+|.+||.| .++.| ..+||||||+|++.++|++|- +|||
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~V------------ldVEIIfNERGSKGFGFVTmen~~dadRARa~LHg 158 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKV------------LDVEIIFNERGSKGFGFVTMENPADADRARAELHG 158 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCce------------eeEEEEeccCCCCccceEEecChhhHHHHHHHhhc
Confidence 344567899999999999999999999999984 44443 247999999999999999999 7999
Q ss_pred ceecCceEEEeCCCCC
Q 009954 244 IIFEGVAVRVRRPTDY 259 (521)
Q Consensus 244 ~~~~g~~i~v~~~~~~ 259 (521)
..|.|++|.|+.+...
T Consensus 159 t~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 159 TVVEGRKIEVNNATAR 174 (376)
T ss_pred ceeeceEEEEeccchh
Confidence 9999999999987654
No 95
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=6.9e-12 Score=104.19 Aligned_cols=74 Identities=31% Similarity=0.463 Sum_probs=65.7
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~-~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
..++|||+||+..+++.+|...|..||. +..+++.. ..|||||+|+++.+|..|+ .|+|..|.|..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~------------lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r 76 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGP------------LRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSR 76 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCc------------ceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCce
Confidence 3678999999999999999999999997 56666654 5699999999999999999 79999999999
Q ss_pred EEEeCCCC
Q 009954 251 VRVRRPTD 258 (521)
Q Consensus 251 i~v~~~~~ 258 (521)
|+|+....
T Consensus 77 ~rVE~S~G 84 (195)
T KOG0107|consen 77 IRVELSTG 84 (195)
T ss_pred EEEEeecC
Confidence 99986543
No 96
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=2.3e-11 Score=117.47 Aligned_cols=169 Identities=23% Similarity=0.290 Sum_probs=114.5
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~ 252 (521)
.++|||+|||..+|+++|.++|..||.+.... ...+..++..+|||||+|.+.++|..|+ .+++..|.|+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~------~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVR------LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEE------eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 68999999999999999999999999864321 1233346778999999999999999999 6999999999999
Q ss_pred EeCCCC-CCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC
Q 009954 253 VRRPTD-YNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331 (521)
Q Consensus 253 v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 331 (521)
|.+... ......... . ......................+++.+++..++..++..+|..+|.+..+.+.....
T Consensus 189 v~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 189 VQKAQPASQPRSELSN-----N-LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred eecccccccccccccc-----c-cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 998543 110000000 0 000000001111222334456799999999999999999999999997777766543
Q ss_pred CCCcceEEEEEEcChHHHHHHHH
Q 009954 332 TGNSKGYGFCVYQDPAVTDIACA 354 (521)
Q Consensus 332 ~g~~~g~afV~f~~~~~A~~Al~ 354 (521)
........++.+.....+..++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 263 GKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred CcccccccccchhHHHhhhhhhc
Confidence 33344444444444444444443
No 97
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.26 E-value=8.6e-12 Score=92.68 Aligned_cols=68 Identities=35% Similarity=0.535 Sum_probs=56.1
Q ss_pred EEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEE-EecCCCCeEEEEecCHHHHHHHH-HccCceecCceEE
Q 009954 177 VYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV-YINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (521)
Q Consensus 177 l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~-~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~ 252 (521)
|||+|||.++|+++|+++|.+||.+..+ .+.. ..+..++||||+|.+.++|.+|+ .|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~--------~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESI--------KVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEE--------EEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccc--------cccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999985321 1111 12345799999999999999999 5999999999885
No 98
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1e-11 Score=97.38 Aligned_cols=78 Identities=24% Similarity=0.402 Sum_probs=66.9
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC------CCCeEEEEecCHHHHHHHH-Hc
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-AL 241 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~a~~A~-~l 241 (521)
.+...+++|||+||++.+||++|.++|+++|.| ..+.++. .-|||||+|.+.++|..|| -+
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~i------------rriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryi 98 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDI------------RRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYI 98 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccch------------heeEeccccCCcCccceEEEEEecchhHHHHHHHh
Confidence 456779999999999999999999999999985 3333333 3499999999999999999 59
Q ss_pred cCceecCceEEEeCCCC
Q 009954 242 DGIIFEGVAVRVRRPTD 258 (521)
Q Consensus 242 ~g~~~~g~~i~v~~~~~ 258 (521)
+|..+..++|.|.|...
T Consensus 99 sgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 99 SGTRLDDRPIRIDWDAG 115 (153)
T ss_pred ccCcccccceeeecccc
Confidence 99999999999987543
No 99
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.26 E-value=1.1e-10 Score=117.89 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
+||||++|+..++|.||.++|+.||.|.+|.++.. +|||||.+....+|.+||.+|+...+.++.|+|.|+..+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 58999999999999999999999999999998765 789999999999999999999999999999999999876
Q ss_pred CCCc
Q 009954 375 GQSK 378 (521)
Q Consensus 375 ~~~~ 378 (521)
+...
T Consensus 496 G~ks 499 (894)
T KOG0132|consen 496 GPKS 499 (894)
T ss_pred Ccch
Confidence 6543
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.24 E-value=3.3e-11 Score=89.09 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=49.8
Q ss_pred HHHHHHHhhccccceeEEE-ecCCCCC--CCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEE
Q 009954 442 ILEDMREECGKYGTLVNVV-IPRPDQN--GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 507 (521)
Q Consensus 442 ~~~dl~~~f~~fG~I~~v~-i~~~~~~--~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~ 507 (521)
|.+.+.++|+.||.|.+|. |..+..+ +.. +|+|||+|.+.++|.+|++.|||..|+|+.|+++
T Consensus 5 l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~---rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 5 FEREFSEEEEYFGEVGKINKIYIDNVGYENHK---RGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred HHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCC---cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 3345555555999999995 5555434 432 5788999999999999999999999999999874
No 101
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=6.8e-12 Score=116.33 Aligned_cols=191 Identities=20% Similarity=0.192 Sum_probs=127.5
Q ss_pred eEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE--ecCCCCeEEEEecCHHHHHHHHHccCceecCceEEE
Q 009954 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY--INHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253 (521)
Q Consensus 176 ~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~v 253 (521)
.|.+.|||++.|+.++.+||.+--.+.+ ..+.|.-+. -++..|-|||.|..+++|+.||.-|...|+.+-|.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~-----g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTG-----GTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccC-----CccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 5788999999999999999974333221 122344443 355679999999999999999977777777766666
Q ss_pred eCCCCCCccccccCCCCCCCCC-cccccccCCCC-CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeE--EEEee
Q 009954 254 RRPTDYNPTLAAALGPGQPSPN-LNLAAVGLASG-AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT-LHG--FDLVK 328 (521)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~--v~i~~ 328 (521)
-++....-..........+... .........+. -........+|.+++||+..+.+||.++|..|.. |.. |.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 4322111000000000000000 00000000000 0111223568999999999999999999998876 443 77777
Q ss_pred cCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
+ ..|.+.|-|||+|.+.|.|..|....+.+....+.|.|-.+.
T Consensus 318 N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 318 N-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred c-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 6 479999999999999999999999999888889999998764
No 102
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=7.2e-12 Score=109.39 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=69.1
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceE
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
..-.+||||||++.++.++|+++|++||+|+..++ |.|..+++++|||||+|.+.+.|.+|++--.-.|+||+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavv------itd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVV------ITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEE------EeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 34568999999999999999999999999876543 778889999999999999999999999666667899887
Q ss_pred EEeCCC
Q 009954 252 RVRRPT 257 (521)
Q Consensus 252 ~v~~~~ 257 (521)
.++.+.
T Consensus 84 NcnlA~ 89 (247)
T KOG0149|consen 84 NCNLAS 89 (247)
T ss_pred ccchhh
Confidence 777543
No 103
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.1e-11 Score=106.76 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=74.4
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
...+.++|-|.||+.++++.+|.++|.+||.|...++ .++..++.++|||||.|.+.++|.+|+ .|||.-+..
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyl------ardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~ 258 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYL------ARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN 258 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEE------EEccccCcccceEEEEEecHHHHHHHHHHccCcccce
Confidence 3447789999999999999999999999999866544 778889999999999999999999999 799999999
Q ss_pred ceEEEeCCCC
Q 009954 249 VAVRVRRPTD 258 (521)
Q Consensus 249 ~~i~v~~~~~ 258 (521)
--|.|.|+++
T Consensus 259 LILrvEwskP 268 (270)
T KOG0122|consen 259 LILRVEWSKP 268 (270)
T ss_pred EEEEEEecCC
Confidence 9999999764
No 104
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.19 E-value=7.5e-11 Score=105.12 Aligned_cols=76 Identities=24% Similarity=0.268 Sum_probs=66.0
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---cCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
..+|+|+||++.+|+++|++||+.||.| .++.+ +..++||||+|.++++|..|+.|+|..|.++.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I------------~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAI------------EHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCe------------EEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCce
Confidence 3589999999999999999999999984 44444 34568999999999999999999999999999
Q ss_pred EEEeCCCCCCc
Q 009954 251 VRVRRPTDYNP 261 (521)
Q Consensus 251 i~v~~~~~~~~ 261 (521)
|.|.....+..
T Consensus 73 I~It~~~~y~~ 83 (243)
T PLN03121 73 VCITRWGQYED 83 (243)
T ss_pred EEEEeCccccc
Confidence 99987666554
No 105
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=1.4e-12 Score=108.62 Aligned_cols=91 Identities=26% Similarity=0.362 Sum_probs=80.6
Q ss_pred cchhhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCc
Q 009954 166 MTQQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI 244 (521)
Q Consensus 166 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 244 (521)
.+.+....+.-|||||||+.+||.+|.-.|++||+++..++ |.+..+++++||||+.|++......|+ .|||.
T Consensus 27 SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinL------iRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 27 SWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINL------IRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred chhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEE------EecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence 44456677889999999999999999999999999877655 788889999999999999999999999 79999
Q ss_pred eecCceEEEeCCCCCCcc
Q 009954 245 IFEGVAVRVRRPTDYNPT 262 (521)
Q Consensus 245 ~~~g~~i~v~~~~~~~~~ 262 (521)
.|.|+.|+|.....|..+
T Consensus 101 ki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 101 KILGRTIRVDHVSNYKKP 118 (219)
T ss_pred eecceeEEeeecccccCC
Confidence 999999999877666543
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.6e-10 Score=108.48 Aligned_cols=172 Identities=22% Similarity=0.229 Sum_probs=114.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCC---eEEEEecCHHHHHHHH-HccCcee
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK---FAFVEMRTVEEASNAM-ALDGIIF 246 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g---~afV~f~~~~~a~~A~-~l~g~~~ 246 (521)
..-+++||||+||++++|++|...|..||.+.-... + ..........+| |+|+.|+++......+ +..- .-
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP---~-k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~ 330 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWP---G-KANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GE 330 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecC---C-CccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cc
Confidence 355789999999999999999999999998532111 0 001111122356 9999999999888777 2110 00
Q ss_pred cCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHH-hcCCeeEEE
Q 009954 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLE-SFGTLHGFD 325 (521)
Q Consensus 247 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~-~~G~i~~v~ 325 (521)
..--++|.-+...... -....+.++.....-......++.+||||++||-.++-++|..+|+ .||.|..+-
T Consensus 331 ~~~yf~vss~~~k~k~--------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaG 402 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKE--------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVG 402 (520)
T ss_pred cceEEEEecCcccccc--------eeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEE
Confidence 0111222211111000 0000011111111111333456778999999999999999999999 899999999
Q ss_pred EeecCCCCCcceEEEEEEcChHHHHHHHHH
Q 009954 326 LVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (521)
Q Consensus 326 i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 355 (521)
|-+|++-+-++|-|=|.|.+...-.+||.+
T Consensus 403 IDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 403 IDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred eccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 999988999999999999999999999875
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=1.1e-10 Score=92.50 Aligned_cols=82 Identities=24% Similarity=0.230 Sum_probs=70.3
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
..+--.|||.++...+|+++|.+.|..||+|+..++ -.+..++.-+|||+|+|.+.++|+.|+ ++||..+.|+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihL------NLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHL------NLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceee------ccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 344557999999999999999999999999765433 355566777999999999999999999 7999999999
Q ss_pred eEEEeCCCC
Q 009954 250 AVRVRRPTD 258 (521)
Q Consensus 250 ~i~v~~~~~ 258 (521)
+|.|.|+-.
T Consensus 143 ~v~VDw~Fv 151 (170)
T KOG0130|consen 143 NVSVDWCFV 151 (170)
T ss_pred ceeEEEEEe
Confidence 999998643
No 108
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.2e-10 Score=86.49 Aligned_cols=69 Identities=26% Similarity=0.466 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 439 YEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 439 ~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
|..+.+++.++|.+||.|..|.|=....+ .|.|||.|+++.+|.+|+..|+|..+.++.|.|-|+...+
T Consensus 28 ~~ITseemydlFGkyg~IrQIRiG~~k~T------rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 28 FKITSEEMYDLFGKYGTIRQIRIGNTKET------RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred ccccHHHHHHHhhcccceEEEEecCccCc------CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 33445799999999999999999665433 5889999999999999999999999999999999976543
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.06 E-value=5.1e-10 Score=111.54 Aligned_cols=196 Identities=9% Similarity=0.017 Sum_probs=125.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
+.+-+.+++.++.+.|++++|... .|-.+.|..+...+..+|.++|+|....++++|+.. +...+-.+.|.|..+...
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcc
Confidence 446689999999999999998842 244445555554556688999999999999999885 666777888888876551
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcc--------CCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHH
Q 009954 375 GQSKTEQESILAQAQQHIAIQKMALQTS--------GMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDM 446 (521)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl 446 (521)
.-.....-... . .. ......+ +...+|..++..- -...|+.|..+.-... +.++
T Consensus 390 ~~~~a~~~~~~--~----~~-~~~~~~hg~p~~~pr~~~~~gq~vp~P~-~ag~~lyv~~lP~~t~----------~~~~ 451 (944)
T KOG4307|consen 390 GRNGAPPFQAG--V----PP-PVIQNNHGRPIAPPRAMVRPGQNVPFPG-GAGGALYVFQLPVMTP----------IVPP 451 (944)
T ss_pred ccccCcccccc--C----CC-CcccccCCCCCCCcccccCCCCCCCCCC-CccceEEeccCCcccc----------ccch
Confidence 11100000000 0 00 0000000 1111232222222 2234555444322222 2488
Q ss_pred HHhhccccceeE-EEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 447 REECGKYGTLVN-VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 447 ~~~f~~fG~I~~-v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
.++|..--.|++ |.|.+.. ++.- .+.|||.|.+++++.+|+..-+-+++|.+.|+|.-+.++.+
T Consensus 452 v~~f~~~~~Ved~I~lt~~P-~~~~---~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 452 VNKFMGAAAVEDFIELTRLP-TDLL---RPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred hhhhhhhhhhhheeEeccCC-cccc---cchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 999998778888 6665554 4332 36789999999999999999999999999999999887766
No 110
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.05 E-value=3.4e-10 Score=84.01 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=53.2
Q ss_pred HHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEE
Q 009954 441 EILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVN 505 (521)
Q Consensus 441 ~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~ 505 (521)
+.+++|+++|+.||.|..|.+..+.. + .++|+|||+|.++++|..|++.++|..|+|+.|+
T Consensus 10 ~~~~~l~~~f~~~g~v~~v~~~~~~~-~---~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 10 TTEEDLRNFFSRFGPVEKVRLIKNKD-G---QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp --HHHHHHHCTTSSBEEEEEEEESTT-S---SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCHHHHHHHHHhcCCcceEEEEeeec-c---ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 34479999999999999999998753 3 3468999999999999999999999999999985
No 111
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=1.7e-09 Score=106.18 Aligned_cols=178 Identities=17% Similarity=0.191 Sum_probs=114.9
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE-ecCCCCeEEEEecCHHHHHHHH-HccCcee
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY-INHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~-~~~~~g~afV~f~~~~~a~~A~-~l~g~~~ 246 (521)
......++|+|-|||..+++++|..+|..||+|. .+. +....|.+||+|.+..+|++|+ +|++..|
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir------------~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIR------------EIRETPNKRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchh------------hhhcccccCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 4456788999999999999999999999999954 333 3446799999999999999999 7999999
Q ss_pred cCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 009954 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (521)
Q Consensus 247 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i 326 (521)
.|+.|+ .+...... .+......-++.....+.....++-. ...+|. .|++..+..-+...|.-+|.+.. ..
T Consensus 138 ~~~~~k--~~~~~~~~----~~~~~~~~~~~~~~~p~a~s~pgg~~-~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~ 208 (549)
T KOG4660|consen 138 AGKRIK--RPGGARRA----MGLQSGTSFLNHFGSPLANSPPGGWP-RGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE 208 (549)
T ss_pred hhhhhc--CCCccccc----chhcccchhhhhccchhhcCCCCCCc-CCccee-eeccchhhhhhhcchhccCcccc-cc
Confidence 999988 21111111 11111111111000000001111111 122333 38888888777777778887765 32
Q ss_pred eecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
++.-.-.-|++|.+..++..++..+ |..+.+....++++.+
T Consensus 209 -----~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 209 -----TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred -----ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 2221224689999999987776644 7777887777777765
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.04 E-value=6.3e-10 Score=98.15 Aligned_cols=131 Identities=23% Similarity=0.367 Sum_probs=107.2
Q ss_pred cCCCCeEEEEecCHHHHHHHH-HccCceecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeE
Q 009954 219 NHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 297 (521)
Q Consensus 219 ~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (521)
+.-.+++|+.|.....-.++. +-+++++.-.+|++.....+...... .-.+...+|
T Consensus 137 ~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~-----------------------ew~~~DfRI 193 (290)
T KOG0226|consen 137 QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLA-----------------------EWDEDDFRI 193 (290)
T ss_pred CccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccc-----------------------cCcccccee
Confidence 445689999999887777777 56777777777777655444332111 112334689
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 298 ~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
|++.|..+++.+.|...|.+|-.....++++++.||+++||+||-|.++.++..|+.+|+|.+++.+.|++..+.
T Consensus 194 fcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 194 FCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988653
No 113
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.03 E-value=1e-09 Score=94.28 Aligned_cols=81 Identities=31% Similarity=0.515 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESF-GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~-G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
....++|..+|..+.+..|..+|.+| |.|..+++.+++.||.++|||||+|++.+.|.-|-+.||+..|.|+-|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34568999999999999999999988 77888899899999999999999999999999999999999999999999998
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 65
No 114
>smart00362 RRM_2 RNA recognition motif.
Probab=99.03 E-value=1.1e-09 Score=81.25 Aligned_cols=67 Identities=37% Similarity=0.635 Sum_probs=57.7
Q ss_pred eEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC----CCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 176 ~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
+|+|+|||..+++++|+++|.+||. +..+.+.. .+++|||+|.+.++|..|+ .+++..+.|+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~------------v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~ 68 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGP------------IESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP 68 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCC------------EEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE
Confidence 5899999999999999999999997 34444333 4599999999999999999 69999999999
Q ss_pred EEEe
Q 009954 251 VRVR 254 (521)
Q Consensus 251 i~v~ 254 (521)
|.|+
T Consensus 69 i~v~ 72 (72)
T smart00362 69 LRVE 72 (72)
T ss_pred EeeC
Confidence 8873
No 115
>PLN03213 repressor of silencing 3; Provisional
Probab=99.02 E-value=6.3e-10 Score=106.73 Aligned_cols=73 Identities=19% Similarity=0.406 Sum_probs=62.3
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec--CCCCeEEEEecCH--HHHHHHH-HccCceecC
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTV--EEASNAM-ALDGIIFEG 248 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~--~~~g~afV~f~~~--~~a~~A~-~l~g~~~~g 248 (521)
.-+||||||++.+|+++|..+|..||.|.. +.+. ..+|||||+|.+. .++.+|+ .|||..|.|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkd------------VEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG 77 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDA------------VEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG 77 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeE------------EEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC
Confidence 458999999999999999999999998543 3222 2389999999987 6899999 799999999
Q ss_pred ceEEEeCCCC
Q 009954 249 VAVRVRRPTD 258 (521)
Q Consensus 249 ~~i~v~~~~~ 258 (521)
+.|+|+.++.
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 9999987663
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.4e-10 Score=102.39 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
.+.+.|||-.|.+-++.+||.-+|+.||.|.++.|++|..||.+-.||||+|.+.+++++|.-.|++..|..+.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
+.
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 65
No 117
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.7e-10 Score=99.19 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=72.4
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....++||||+|...+|+.-|...|-+||.|... ....+....+++|||||+|...|+|..|| .||+..+.|+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dI------qiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr 80 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDI------QIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR 80 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhc------ccccchhcccccceeEEEeeccchhHHHhhcCchhhhcce
Confidence 3456899999999999999999999999997543 23566677889999999999999999999 7999999999
Q ss_pred eEEEeCCCCC
Q 009954 250 AVRVRRPTDY 259 (521)
Q Consensus 250 ~i~v~~~~~~ 259 (521)
.|+|+++.+.
T Consensus 81 tirVN~AkP~ 90 (298)
T KOG0111|consen 81 TIRVNLAKPE 90 (298)
T ss_pred eEEEeecCCc
Confidence 9999987653
No 118
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.00 E-value=2.3e-10 Score=112.88 Aligned_cols=81 Identities=27% Similarity=0.414 Sum_probs=74.4
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEE
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v 253 (521)
+.|||||+|+++++++|.++|...|.|+.+.+ +.|..+++.+||||++|.+.++|..|+ .|||..+.|++|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~------v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRL------VYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeee------cccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 78999999999999999999999999877654 778888999999999999999999999 79999999999999
Q ss_pred eCCCCCCc
Q 009954 254 RRPTDYNP 261 (521)
Q Consensus 254 ~~~~~~~~ 261 (521)
.|+.....
T Consensus 93 ~~~~~~~~ 100 (435)
T KOG0108|consen 93 NYASNRKN 100 (435)
T ss_pred ecccccch
Confidence 99886554
No 119
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=7.8e-10 Score=99.84 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=70.4
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
.+-+||||+-|+.+++|..|+..|..||.|.... .|.+..+++++|||||+|+++.+...|. +.+|.+|.|+.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ikrir------lV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIR------LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEE------EeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 4678999999999999999999999999986533 3777788999999999999999999999 79999999999
Q ss_pred EEEeC
Q 009954 251 VRVRR 255 (521)
Q Consensus 251 i~v~~ 255 (521)
|.|.+
T Consensus 173 i~VDv 177 (335)
T KOG0113|consen 173 ILVDV 177 (335)
T ss_pred EEEEe
Confidence 99974
No 120
>smart00360 RRM RNA recognition motif.
Probab=98.99 E-value=1e-09 Score=81.27 Aligned_cols=62 Identities=26% Similarity=0.461 Sum_probs=55.0
Q ss_pred HHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEE
Q 009954 443 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 507 (521)
Q Consensus 443 ~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~ 507 (521)
.++|+++|+.||.|..|.+..+..++.. .|+|||+|.+.++|..|+..|++..++|+.|.|.
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~---~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDTGKS---KGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCCCCC---CceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 3699999999999999999987654433 5889999999999999999999999999999873
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.92 E-value=1e-09 Score=98.58 Aligned_cols=97 Identities=31% Similarity=0.519 Sum_probs=79.6
Q ss_pred CcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhC
Q 009954 417 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 496 (521)
Q Consensus 417 ~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng 496 (521)
++++|+.|.|.+...+.. +++++.+++.|++||.|.+|.|.-.+..... -.-..||+|.++++|.+|+-.|||
T Consensus 279 ~ptkvlllrnmVg~gevd-----~elede~keEceKyg~V~~viifeip~~p~d--eavRiFveF~r~e~aiKA~VdlnG 351 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVD-----EELEDETKEECEKYGKVGNVIIFEIPSQPED--EAVRIFVEFERVESAIKAVVDLNG 351 (378)
T ss_pred cchHHHHhhhhcCccccc-----HHHHHHHHHHHHhhcceeeEEEEecCCCccc--hhheeeeeeccHHHHHHHHHhcCC
Confidence 788888888888776543 3466789999999999999998776422211 123479999999999999999999
Q ss_pred CeeCCcEEEEEEcCCCCcccccCC
Q 009954 497 RKFGGNTVNAFYYPEDKYFNKDYS 520 (521)
Q Consensus 497 ~~~~gr~l~v~~~~~~~~~~~~~~ 520 (521)
++||||.+++.|++.++|.+.+++
T Consensus 352 RyFGGr~v~A~Fyn~ekfs~~ela 375 (378)
T KOG1996|consen 352 RYFGGRVVSACFYNLEKFSNLELA 375 (378)
T ss_pred ceecceeeeheeccHHhhhhhhhh
Confidence 999999999999999999987653
No 122
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.91 E-value=7.8e-09 Score=100.91 Aligned_cols=81 Identities=20% Similarity=0.371 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||.+|...+-..||+.+|++||.|+..+|+++..+...++|+||++.+.++|.+||+.||...|.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 34689999999999999999999999999999999987787889999999999999999999999999999999999997
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
+
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 7
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=8.3e-09 Score=95.31 Aligned_cols=76 Identities=16% Similarity=0.344 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc-CCeeCCeEEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN-GLKMGDKTLTVRR 370 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~-g~~~~g~~l~v~~ 370 (521)
..-.+|||++|-..++|.+|+++|.+||.|.+|.+... +++|||+|.+.+.|+.|.+.+- ...|+|..|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34468999999999999999999999999999998875 5699999999999999886654 4678999999999
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 976
No 124
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.87 E-value=1.2e-08 Score=76.14 Aligned_cols=68 Identities=37% Similarity=0.573 Sum_probs=58.3
Q ss_pred eEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-----CCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-----EKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 176 ~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
+|+|+|||..+++++|+++|..+|.+ ..+.+.. ..++|||+|.+.++|..|+ .+++..+.|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i------------~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKV------------ESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCE------------EEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 48999999999999999999999873 3333332 3799999999999999999 7999999999
Q ss_pred eEEEeC
Q 009954 250 AVRVRR 255 (521)
Q Consensus 250 ~i~v~~ 255 (521)
.+.|.+
T Consensus 69 ~~~v~~ 74 (74)
T cd00590 69 PLRVEF 74 (74)
T ss_pred EEEEeC
Confidence 998863
No 125
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=3.8e-10 Score=97.17 Aligned_cols=138 Identities=23% Similarity=0.295 Sum_probs=113.4
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC----CCeEEEEecCHHHHHHHHH-ccCcee
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE----KKFAFVEMRTVEEASNAMA-LDGIIF 246 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~a~~A~~-l~g~~~ 246 (521)
+..++|||+|+-..++|+-|.++|-+.|. |+.+.+... ..||||.|.++-....|++ +||..+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGP------------V~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l 74 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGP------------VYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDL 74 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCc------------eEEEeCCCCccCCCceeeeecccccchhhhhhhcccchh
Confidence 45689999999999999999999999987 666665432 3599999999999999995 899999
Q ss_pred cCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHHHhcCCee
Q 009954 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGG----LPYYFTETQIKELLESFGTLH 322 (521)
Q Consensus 247 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----Lp~~~te~~l~~~F~~~G~i~ 322 (521)
.+..++|+. +.++ |...++++.+...|+.-|++.
T Consensus 75 ~~~e~q~~~------------------------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~ 112 (267)
T KOG4454|consen 75 EEDEEQRTL------------------------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIE 112 (267)
T ss_pred ccchhhccc------------------------------------------ccCCCcchhhhhcchhhheeeecccCCCC
Confidence 999988853 3344 566788999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCe
Q 009954 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364 (521)
Q Consensus 323 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (521)
.+++..+. +|..+.++|+.+...-..-.|+....+..+.-+
T Consensus 113 ~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 113 GVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred Cccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 99999885 588888999998887777778877666544333
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.84 E-value=2.5e-09 Score=100.93 Aligned_cols=176 Identities=18% Similarity=0.212 Sum_probs=132.1
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCc-eecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGI-IFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~-~~~g~~ 250 (521)
....++|++++...+.+.++..++..+|.....- ....-....++++++|.|...+.+..|+++.+. .+.+..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~------~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDAR------SSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccch------hhhhccccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 3467899999999999998999999998743221 112223455789999999999999999987775 444444
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF-VGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 329 (521)
+..-........ . .............++| |.+|+..+++++|+.+|..+|.|+.+++..+
T Consensus 160 ~~~dl~~~~~~~--------~-----------~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 160 GEKDLNTRRGLR--------P-----------KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred ccCccccccccc--------c-----------cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 433221111100 0 0000011122334555 9999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 330 ~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
+.++..+|||||+|.....+..|+.. ....+.++++.+.+..+
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 99999999999999999999999987 78999999999999876
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=8.4e-09 Score=88.66 Aligned_cols=65 Identities=14% Similarity=0.296 Sum_probs=59.5
Q ss_pred HHHHhhccc-cceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 445 DMREECGKY-GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 445 dl~~~f~~f-G~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
.|..+|.+| |.|..+.+.++..||+. +|+|||+|.+.+.|..|.+.||+..|+|+-|.|.+++++
T Consensus 65 ~~~~~~~q~~g~v~r~rlsRnkrTGNS---KgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 65 EILNYFRQFGGTVTRFRLSRNKRTGNS---KGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred HHhhhhhhcCCeeEEEEeecccccCCc---CceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 677777777 78888899899999986 688899999999999999999999999999999999998
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1.7e-09 Score=111.24 Aligned_cols=158 Identities=15% Similarity=0.242 Sum_probs=123.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
.+.+||++||+..+++.+|+..|..+|.|..|.|...+ -+.---||||.|.+...+..|+..+.+..|..-.+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 44689999999999999999999999999999987764 23334489999999999999999999988876677666664
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcc
Q 009954 373 ASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGK 452 (521)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~ 452 (521)
++.+.. +...+-.|..+.+. ..|..+|..
T Consensus 450 ~kst~t--------------------------------------tr~~sgglg~w~p~-------------~~l~r~fd~ 478 (975)
T KOG0112|consen 450 PKSTPT--------------------------------------TRLQSGGLGPWSPV-------------SRLNREFDR 478 (975)
T ss_pred cccccc--------------------------------------eeeccCCCCCCChH-------------HHHHHHhhc
Confidence 311110 11112223333333 389999999
Q ss_pred ccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCC--cEEEEEEcCC
Q 009954 453 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPE 511 (521)
Q Consensus 453 fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~g--r~l~v~~~~~ 511 (521)
||.|..|.+..- .-+|||.|.+...|+.|++.|-|..||| +.|.|.|+.+
T Consensus 479 fGpir~Idy~hg---------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 479 FGPIRIIDYRHG---------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred cCcceeeecccC---------CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 999999887542 2589999999999999999999999988 7799988754
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=1.9e-10 Score=117.75 Aligned_cols=236 Identities=14% Similarity=0.132 Sum_probs=167.7
Q ss_pred CCeEEEeCCCccCcHH-HHHHHHHHHHHhhcCCCCCCCCceEEEEecC------CCCeEEEEecCHHHHHHHHHccCcee
Q 009954 174 ARRVYVGGLPPLANEQ-AIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAMALDGIIF 246 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~-~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~a~~A~~l~g~~~ 246 (521)
.....+.++.+..... .++..|..+|. +..++... ...++++.+.....++.|....+..+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~------------vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~ 638 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGN------------VEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGAL 638 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccc------------cccccCccccccccccchhhhhhccccchhhccccccccc
Confidence 3456677777776555 56778888876 33333332 23488999999999999998888888
Q ss_pred cCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 009954 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (521)
Q Consensus 247 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i 326 (521)
.++.+.|..+......... ...+ .......++||+||++.+.+.+|...|..+|.+..+++
T Consensus 639 a~~~~av~~ad~~~~~~~~---kvs~----------------n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi 699 (881)
T KOG0128|consen 639 ANRSAAVGLADAEEKEENF---KVSP----------------NEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQI 699 (881)
T ss_pred CCccccCCCCCchhhhhcc---CcCc----------------hHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHH
Confidence 8877777543322211000 0000 00011246899999999999999999999999988887
Q ss_pred eecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 009954 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNT 406 (521)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (521)
......+..+|+|||+|..+++|.+|+....+..++...|.|.
T Consensus 700 ~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~------------------------------------- 742 (881)
T KOG0128|consen 700 VIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAIS------------------------------------- 742 (881)
T ss_pred HHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhee-------------------------------------
Confidence 7666688999999999999999999998655554442111111
Q ss_pred CCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHH
Q 009954 407 LGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVG 486 (521)
Q Consensus 407 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~ 486 (521)
.+. +.-+.+.++.+|..+|++.++.++... .|.+ +|.|||.|.+..+
T Consensus 743 ------------------g~p-----------f~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkp---kg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 743 ------------------GPP-----------FQGTKEELKSLASKTGNVTSLRLVTVR-AGKP---KGKARVDYNTEAD 789 (881)
T ss_pred ------------------CCC-----------CCCchHHHHhhccccCCccccchhhhh-cccc---ccceeccCCCcch
Confidence 001 111225899999999999999876654 5555 7999999999999
Q ss_pred HHHHHHHHhCCeeCCcEEEEEEcC
Q 009954 487 CATAKNALSGRKFGGNTVNAFYYP 510 (521)
Q Consensus 487 A~~Ai~~lng~~~~gr~l~v~~~~ 510 (521)
|..++..+.+..+.-+.+.|..-+
T Consensus 790 ~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhcccchhhhhhhcCccccccC
Confidence 999999999988888877777633
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=3.1e-09 Score=109.41 Aligned_cols=162 Identities=20% Similarity=0.335 Sum_probs=127.2
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
....+++||++||+..+++.+|+..|..+|.+... -|....++....||||.|.+...+-.|. ++.+..|..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~V-------DiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEV-------DIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhcccccc-------ccccCCCCcccchhhhhhhccccCcccchhhcCCcccc
Confidence 34568899999999999999999999999984210 0111123445679999999999999999 788877765
Q ss_pred ceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 009954 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 328 (521)
-.+++.+... -....+.+++++|.+.+....|...|..||.|..|.+-.
T Consensus 441 g~~r~glG~~-------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h 489 (975)
T KOG0112|consen 441 GTHRIGLGQP-------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH 489 (975)
T ss_pred Cccccccccc-------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc
Confidence 5555543211 112335799999999999999999999999999887643
Q ss_pred cCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC--eEEEEEEccCCC
Q 009954 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRATASG 375 (521)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~~~~ 375 (521)
. .-||||+|.+...|+.|+..|-|..|+| +.+.|.|+....
T Consensus 490 g------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 490 G------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred C------CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 3 3489999999999999999999999986 779999998743
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=3.1e-10 Score=116.23 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=123.7
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
.....++||.||++.+.+.+|...|..+|.+... .+.+....+.-+|+|||+|..++++.+|+.++-..+.|+
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~v------qi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK- 736 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVV------QIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK- 736 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhH------HHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh-
Confidence 3456789999999999999999999999874321 112222334457999999999999999998776666551
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 330 (521)
..|+|.|+|+..|.++|+.+|.++|.++++.++...
T Consensus 737 --------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 737 --------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred --------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 268899999999999999999999999999988774
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.|+++|.|||.|.++.+|.++...+++..+.-..+.|..+.+
T Consensus 773 -~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 773 -AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred -ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 899999999999999999999998888877777777776544
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=1.2e-08 Score=100.34 Aligned_cols=174 Identities=14% Similarity=0.098 Sum_probs=108.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
..+|+|-|||..+++++|..+|+.||.|..|+. +-...|.+||+|.++-+|+.|+++|++..|.|+.|+......
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 358999999999999999999999999999764 444578999999999999999999999999999988221111
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccc
Q 009954 374 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 453 (521)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~f 453 (521)
...--+.. ..-....... ...+.+|. .+....+..|.+..+.. -+.-.|.-+
T Consensus 150 --~~~~~~~~-------~~~~~~~~~p-~a~s~pgg-----~~~~~~~g~l~P~~s~~-------------~~~~~~~~~ 201 (549)
T KOG4660|consen 150 --RAMGLQSG-------TSFLNHFGSP-LANSPPGG-----WPRGQLFGMLSPTRSSI-------------LLEHISSVD 201 (549)
T ss_pred --ccchhccc-------chhhhhccch-hhcCCCCC-----CcCCcceeeeccchhhh-------------hhhcchhcc
Confidence 00000000 0000000000 00111111 11222233344333331 344556667
Q ss_pred cceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcC
Q 009954 454 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 510 (521)
Q Consensus 454 G~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~ 510 (521)
|.+.. ...... ....|++|.+..++..++..+ |+.+.|.....+|-.
T Consensus 202 ~~~~~-~~~~~~--------~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~ 248 (549)
T KOG4660|consen 202 GSSPG-RETPLL--------NHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSG 248 (549)
T ss_pred Ccccc-ccccch--------hhhhhhhhccccchhhcccCC-ceecCCCCceEEecC
Confidence 76665 222211 125699999999998888765 888888877666643
No 133
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.9e-08 Score=91.69 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=69.7
Q ss_pred CCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 416 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 416 ~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
+-+...+|-.|++|.+ +||--+|+.||+|..|.|+++..+|.. .-+|||+|.+.+++++|.-+|.
T Consensus 238 PeNVLFVCKLNPVTtD------------eDLeiIFSrFG~i~sceVIRD~ktgds---LqyaFiEFen~escE~AyFKMd 302 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTD------------EDLEIIFSRFGKIVSCEVIRDRKTGDS---LQYAFIEFENKESCEQAYFKMD 302 (479)
T ss_pred CcceEEEEecCCcccc------------cchhhHHhhcccceeeeEEecccccch---hheeeeeecchhhHHHHHhhhc
Confidence 4556666777788777 499999999999999999999988875 5789999999999999999999
Q ss_pred CCeeCCcEEEEEE
Q 009954 496 GRKFGGNTVNAFY 508 (521)
Q Consensus 496 g~~~~gr~l~v~~ 508 (521)
+..|..+.|.|.|
T Consensus 303 NvLIDDrRIHVDF 315 (479)
T KOG0415|consen 303 NVLIDDRRIHVDF 315 (479)
T ss_pred ceeeccceEEeeh
Confidence 9999999999998
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.69 E-value=8.2e-08 Score=87.15 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
....+|+|.|||+.++++||+++|+.||.+..+.|..++ +|.+.|.|-|.|...++|..|++.++|..+.|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 334689999999999999999999999999999998885 8999999999999999999999999999999999999987
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
..
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 65
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=7.5e-09 Score=89.35 Aligned_cols=159 Identities=17% Similarity=0.268 Sum_probs=114.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
+...+|||.||...++|+-|.++|-+.|+|..|.|..+. .++.+ ||||.|.++-...-|++.|||..+.+..+.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 334789999999999999999999999999999998885 56666 9999999999999999999999999999999876
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhc
Q 009954 372 TASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
.-..+.+. ..-++. +.+...|+
T Consensus 85 ~G~shapl---------------------------------------------d~r~~~-------------ei~~~v~s 106 (267)
T KOG4454|consen 85 CGNSHAPL---------------------------------------------DERVTE-------------EILYEVFS 106 (267)
T ss_pred cCCCcchh---------------------------------------------hhhcch-------------hhheeeec
Confidence 43111110 001111 36677788
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCe-----------eCCcEEEEEEcCCCCc
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK-----------FGGNTVNAFYYPEDKY 514 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~-----------~~gr~l~v~~~~~~~~ 514 (521)
.-|+|..+.+..+.. +.. ...| ||.+...-..-.|+....+.. .||..|--+..++..|
T Consensus 107 ~a~p~~~~R~~~~~d-~rn-rn~~--~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ggk~Gg~~lpqsgfsPs~~ 176 (267)
T KOG4454|consen 107 QAGPIEGVRIPTDND-GRN-RNFG--FVTYQRLCAVPFALDLYQGLELFQKKVTIGGKQGGKQLPQSGFSPSAY 176 (267)
T ss_pred ccCCCCCcccccccc-CCc-cCcc--chhhhhhhcCcHHhhhhcccCcCCCCcccccccCCCcCCcccCCcccc
Confidence 888999999988764 221 2234 777776666666666555443 4555555444444433
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=4.3e-08 Score=90.70 Aligned_cols=79 Identities=24% Similarity=0.374 Sum_probs=70.8
Q ss_pred hhhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH--HccCce
Q 009954 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM--ALDGII 245 (521)
Q Consensus 168 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~--~l~g~~ 245 (521)
+.......+|||+||-..+++.+|+++|.+||. +..+.+...+++|||+|.+.+.|+.|. .+|...
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGe------------irsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lv 289 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGE------------IRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLV 289 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCC------------eeeEEeecccccceeeehhhHHHHHHHHhhcceee
Confidence 345566789999999999999999999999998 777888888999999999999999999 388888
Q ss_pred ecCceEEEeCCCC
Q 009954 246 FEGVAVRVRRPTD 258 (521)
Q Consensus 246 ~~g~~i~v~~~~~ 258 (521)
|.|+.|+|.|...
T Consensus 290 I~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 290 INGFRLKIKWGRP 302 (377)
T ss_pred ecceEEEEEeCCC
Confidence 9999999999776
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.61 E-value=1e-07 Score=93.25 Aligned_cols=82 Identities=22% Similarity=0.400 Sum_probs=72.2
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....+.|||.+|...+...+|+++|++||.+++..+ |.+..+...+.|+||++.+.++|.++| .|+...|.|+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKV------VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKV------VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceee------eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 345678999999999999999999999999887543 666677777899999999999999999 6999999999
Q ss_pred eEEEeCCCC
Q 009954 250 AVRVRRPTD 258 (521)
Q Consensus 250 ~i~v~~~~~ 258 (521)
.|.|..++.
T Consensus 476 mISVEkaKN 484 (940)
T KOG4661|consen 476 MISVEKAKN 484 (940)
T ss_pred eeeeeeccc
Confidence 999987664
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.55 E-value=2.1e-07 Score=93.67 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
...+++|||+||++.++++.|...|..||+|.+|+|+.... ....+-++||-|.+..+|+.|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34456799999999999999999999999999999987542 334556899999999999999999999999999999
Q ss_pred EEEccC
Q 009954 368 VRRATA 373 (521)
Q Consensus 368 v~~~~~ 373 (521)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999966
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.54 E-value=3.7e-08 Score=87.16 Aligned_cols=147 Identities=16% Similarity=0.298 Sum_probs=106.5
Q ss_pred HHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHH
Q 009954 312 KELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQH 391 (521)
Q Consensus 312 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 391 (521)
...|+-|-.+...+++++. -+.-.+++|+.|.....-.++-..-++.+++-.+|++.-.+....+..
T Consensus 117 ~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl------------ 183 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSL------------ 183 (290)
T ss_pred hhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCccc------------
Confidence 5666666666666666664 466688999999988777777666667777777766665433111100
Q ss_pred HHHHHHhhhccCCCCCCCCCCCCCCCcceEEE--eeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCC
Q 009954 392 IAIQKMALQTSGMNTLGGGMSLFGETLAKVLC--LTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGG 469 (521)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~ 469 (521)
.+-.....+|+| |.|.++++ -|...|.+|-.....+++++.-++.
T Consensus 184 --------------------~ew~~~DfRIfcgdlgNevnd~-------------vl~raf~Kfpsf~~akviRdkRTgK 230 (290)
T KOG0226|consen 184 --------------------AEWDEDDFRIFCGDLGNEVNDD-------------VLARAFKKFPSFQKAKVIRDKRTGK 230 (290)
T ss_pred --------------------ccCccccceeecccccccccHH-------------HHHHHHHhccchhhccccccccccc
Confidence 001123444444 66666665 7899999999999999999998887
Q ss_pred CCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEE
Q 009954 470 ETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 507 (521)
Q Consensus 470 ~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~ 507 (521)
++|+| ||.|.++.++..|+..|+|.++|.+.|++.
T Consensus 231 -Skgyg--fVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 231 -SKGYG--FVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred -cccce--eeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 45555 999999999999999999999999998864
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.53 E-value=6.1e-08 Score=91.57 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=128.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
...++|++++...+.+.++..++..+|.+....+........++|+++|.|...+.+..||...-...+.++.+.....+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 34679999999999999999999999988777777666688899999999999999999998533346666666555544
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEE---EeeCcCCcccCCChHHHHHHHHHHHHh
Q 009954 373 ASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVL---CLTEAITADALADDEEYEEILEDMREE 449 (521)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~l~~~~~~~~~~~~~~~~~~~~dl~~~ 449 (521)
...+...... .. ... .....++ .+... +.+++|+.+
T Consensus 167 ~~~~~~~n~~---------------~~-----------~~~--~~s~~~~~~~~~~f~-------------~~~d~~~~~ 205 (285)
T KOG4210|consen 167 RRGLRPKNKL---------------SR-----------LSS--GPSDTIFFVGELDFS-------------LTRDDLKEH 205 (285)
T ss_pred cccccccchh---------------cc-----------ccc--Cccccceeecccccc-------------cchHHHhhh
Confidence 3221000000 00 000 0122222 22222 233588999
Q ss_pred hccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 450 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 450 f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
|..+|.|+.+.++.+..++.. .|+|||.|.+...+..|+.. +...++|+++.+.+-....
T Consensus 206 ~~~~~~i~~~r~~~~~~s~~~---kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 206 FVSSGEITSVRLPTDEESGDS---KGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred ccCcCcceeeccCCCCCccch---hhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 999999999999999988775 57779999999999999998 9999999999998866553
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.53 E-value=9.6e-07 Score=68.38 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHh--cCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC----CeEEEE
Q 009954 295 DRVFVGGLPYYFTETQIKELLES--FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG----DKTLTV 368 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~----g~~l~v 368 (521)
+||.|+|||...|.++|.+++.. .|....+.++.|..++.+.|||||-|.+++.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999984 466778899999889999999999999999999999999998764 678899
Q ss_pred EEccC
Q 009954 369 RRATA 373 (521)
Q Consensus 369 ~~~~~ 373 (521)
.||..
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 99864
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.46 E-value=2.2e-07 Score=84.82 Aligned_cols=80 Identities=23% Similarity=0.411 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
....+||+|+...+|.++|..+|+.||.|..|.|..+..+|.++|||||+|.+.+.+..|+. |+|..|.|+.+.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 34679999999999999999999999999999999999999999999999999999999999 99999999999999875
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
.
T Consensus 179 ~ 179 (231)
T KOG4209|consen 179 T 179 (231)
T ss_pred e
Confidence 3
No 143
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.42 E-value=1.2e-07 Score=84.60 Aligned_cols=76 Identities=21% Similarity=0.342 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhc-cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcc
Q 009954 437 EEYEEILEDMREECG-KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 437 ~~~~~~~~dl~~~f~-~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~ 515 (521)
..|++..+||..+|+ +||+|+.+.|..+..... .|-+||+|...++|++|++.|||+.|+|++|.+.|.+...|.
T Consensus 76 ~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl----~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 76 RHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHL----VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhh----hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 457788889999999 999999999988765554 378899999999999999999999999999999999887765
Q ss_pred c
Q 009954 516 N 516 (521)
Q Consensus 516 ~ 516 (521)
.
T Consensus 152 e 152 (260)
T KOG2202|consen 152 E 152 (260)
T ss_pred h
Confidence 4
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.40 E-value=6.3e-07 Score=88.26 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=66.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
..+|||.|||.++++.+|.++|..||.|+...|....-.+...+||||+|.+.++++.||++ +-..|+++.|.|.--..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999887765432344449999999999999999996 68889999999996543
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.39 E-value=3.2e-07 Score=86.10 Aligned_cols=179 Identities=16% Similarity=0.075 Sum_probs=119.8
Q ss_pred eEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEEEeC
Q 009954 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255 (521)
Q Consensus 176 ~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~v~~ 255 (521)
.|.|.||.+.+|.++++.+|..+|.|-...+.+. +-++.+..-...|||.|.+...+..|..|..++|-++.|.|..
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~---~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPN---VDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCC---CCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 6899999999999999999999999765433221 2333344445789999999999999999999999998888864
Q ss_pred CCCCC-ccc--cccCCCCCCCCC-------------------ccccccc---CCCC--CCCCCCCCCeEEEcCCCCCCCH
Q 009954 256 PTDYN-PTL--AAALGPGQPSPN-------------------LNLAAVG---LASG--AIGGAEGPDRVFVGGLPYYFTE 308 (521)
Q Consensus 256 ~~~~~-~~~--~~~~~~~~~~~~-------------------~~~~~~~---~~~~--~~~~~~~~~~l~v~nLp~~~te 308 (521)
..... +.. ...+++....+. .+.+.+. +.+. +....+...+|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 33221 111 001111100000 0000000 0000 0011122367999999999999
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC
Q 009954 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (521)
Q Consensus 309 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (521)
.++.+.|..+|.|....+.-. ...-+|-|+|........|+. ++|..+.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999999987766433 334578899999999999988 5787776
No 146
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=9e-06 Score=79.75 Aligned_cols=162 Identities=23% Similarity=0.298 Sum_probs=99.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcce---EEEEEEcChHHHHHHHHHHcCCeeCCeEE
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKG---YGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g---~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (521)
-.++|||++||.+++|+.|...|..||.+. |.+....+ --.++| |+|+.|+++...+..|.+..- .-.+--+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~yf 335 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYYF 335 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceEE
Confidence 346899999999999999999999999874 33332111 112456 999999999988877765431 1122223
Q ss_pred EEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCC------CCCCCCCCCCCcceEEEeeCcCCcccCCChHHHH
Q 009954 367 TVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNT------LGGGMSLFGETLAKVLCLTEAITADALADDEEYE 440 (521)
Q Consensus 367 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~ 440 (521)
+|.-.+.+... .+..++.. -....+..+-...+|-.|+-+++-+
T Consensus 336 ~vss~~~k~k~---------------------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~--------- 385 (520)
T KOG0129|consen 336 KVSSPTIKDKE---------------------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAE--------- 385 (520)
T ss_pred EEecCcccccc---------------------eeEEeeEeccchhhhccCcccCccceEEecCCCCcchHH---------
Confidence 33322221110 00000100 0112222222333344455555544
Q ss_pred HHHHHHHHhhc-cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHH
Q 009954 441 EILEDMREECG-KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA 493 (521)
Q Consensus 441 ~~~~dl~~~f~-~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ 493 (521)
+|..+|+ .||.|..|-|..|+.- +.-+|.| =|.|.+...=-+||.+
T Consensus 386 ----eLA~imd~lyGgV~yaGIDtD~k~-KYPkGaG--RVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 386 ----ELAMIMEDLFGGVLYVGIDTDPKL-KYPKGAG--RVTFSNQQAYIKAISA 432 (520)
T ss_pred ----HHHHHHHHhcCceEEEEeccCccc-CCCCCcc--eeeecccHHHHHHHhh
Confidence 8888888 7999999999998633 3334444 9999999999999874
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.24 E-value=3.9e-06 Score=79.00 Aligned_cols=197 Identities=13% Similarity=0.093 Sum_probs=120.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
..|.|.||.+.+|.++++.+|...|.|..+.|+.... -....-.|||.|.+...+..|-. |.++.|=++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4799999999999999999999999999999887432 22334589999999999988865 7778888888877766
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCC--CCCCCCCCC------CCCcceEEEeeCcCCcc------cC----
Q 009954 372 TASGQSKTEQESILAQAQQHIAIQKMALQTSGMN--TLGGGMSLF------GETLAKVLCLTEAITAD------AL---- 433 (521)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~v~~l~~~~~~~------~~---- 433 (521)
-...++... .+.. +..++..+. .+++..|.. ...++.||.-+.+.... ++
T Consensus 87 ~~~~~p~r~--af~~----------l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~ 154 (479)
T KOG4676|consen 87 GDEVIPDRF--AFVE----------LADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTR 154 (479)
T ss_pred CCCCCccHH--HHHh----------cCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhh
Confidence 443322221 1111 111111110 011111111 11222222222221111 11
Q ss_pred -CChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 434 -ADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 434 -~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
+.++.-..+..++.+.|+.+|.|....+.-.. . .-.+.|+|........|+. ++|+.+.-+...+..+.+.
T Consensus 155 ~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~-~------s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 155 EVQSLISAAILPESGESFERKGEVSYAHTASKS-R------SSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhcchhhhcchhhhhhhhhcchhhhhhhhccC-C------CcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 11233344557899999999999887765432 1 1234599999999999988 5888877555555554443
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.23 E-value=6.8e-08 Score=91.28 Aligned_cols=152 Identities=18% Similarity=0.293 Sum_probs=118.3
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCc-eecCceEE
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI-IFEGVAVR 252 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~i~ 252 (521)
..+|++||.+.++..+|..+|...-. -..-.+.-..||+||.+.+...|.+|+ .++|+ .+.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~------------~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI------------PGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC------------CCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 46899999999999999999986511 111122234689999999999999999 57775 48899998
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-eecCC
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL-VKDRD 331 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~ 331 (521)
|.+.-.... ..+.+-|.|+|+...++.|-.++..||.+..+.. ..+++
T Consensus 70 ~~~sv~kkq-------------------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e 118 (584)
T KOG2193|consen 70 VEHSVPKKQ-------------------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE 118 (584)
T ss_pred ccchhhHHH-------------------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH
Confidence 875322211 1245889999999999999999999999998865 33433
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 332 ~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
+ -..-|+|.+.+.+..||..|+|..|.+..++|.|...
T Consensus 119 t----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 119 T----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred H----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 2 2345789999999999999999999999999998744
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.22 E-value=6.4e-06 Score=60.39 Aligned_cols=68 Identities=13% Similarity=0.259 Sum_probs=47.5
Q ss_pred eEEEcCCCCCCCHHH----HHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 296 RVFVGGLPYYFTETQ----IKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 296 ~l~v~nLp~~~te~~----l~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
.|+|.|||.+.+... |+.++..+|. |..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|..|.|.|
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 599999999998765 5667777765 66652 24699999999999999999999999999999999
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 843
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.10 E-value=9.9e-06 Score=79.96 Aligned_cols=76 Identities=22% Similarity=0.343 Sum_probs=62.4
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe--cCCCCeEEEEecCHHHHHHHHHccCceecCc
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~--~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 249 (521)
....+|||.|||+++++.+|.++|..||.|... -+.+.. +....||||+|.+.++++.|+.-+...++++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~--------~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~ 357 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEG--------GIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGR 357 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhccccccc--------ceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCe
Confidence 344569999999999999999999999997532 233333 3334899999999999999998889999999
Q ss_pred eEEEeC
Q 009954 250 AVRVRR 255 (521)
Q Consensus 250 ~i~v~~ 255 (521)
++.|+.
T Consensus 358 kl~Vee 363 (419)
T KOG0116|consen 358 KLNVEE 363 (419)
T ss_pred eEEEEe
Confidence 999974
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.09 E-value=2.5e-07 Score=87.61 Aligned_cols=159 Identities=16% Similarity=0.261 Sum_probs=114.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcC-CeeCCeEEEEEEccC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-LKMGDKTLTVRRATA 373 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g-~~~~g~~l~v~~~~~ 373 (521)
+.||++||.+.++..||..+|...-.-.+-.++. ..|||||.+.+..-|.+|++.|+| ..+.|..+.|.+.-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999998542111111111 247999999999999999999999 468999999988754
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccc
Q 009954 374 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 453 (521)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~f 453 (521)
+.+.... +.+-++... .-++-|-.+...|
T Consensus 76 kkqrsrk-----------------------------------------~Qirnippq----------l~wevld~Ll~qy 104 (584)
T KOG2193|consen 76 KKQRSRK-----------------------------------------IQIRNIPPQ----------LQWEVLDSLLAQY 104 (584)
T ss_pred HHHHhhh-----------------------------------------hhHhcCCHH----------HHHHHHHHHHhcc
Confidence 2221111 001111000 1124677888999
Q ss_pred cceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCccc
Q 009954 454 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 516 (521)
Q Consensus 454 G~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~~ 516 (521)
|+|+.|........ ....-|+|.+.+.++.||..|||..|.+..+++.|++.+....
T Consensus 105 g~ve~~eqvnt~~e------tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~q 161 (584)
T KOG2193|consen 105 GTVENCEQVNTDSE------TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQNAQ 161 (584)
T ss_pred CCHhHhhhhccchH------HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhhhc
Confidence 99999977554321 1345789999999999999999999999999999998765543
No 152
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.01 E-value=2e-05 Score=61.13 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=60.4
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC----c
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG----V 249 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 249 (521)
.||+|.|||...|.++|.+++..... +.+ +=.-..+|.....+.|||||.|.+++.|.+.. .++|..+.. +
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~--g~y--DF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFK--GKY--DFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhcc--Ccc--eEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCc
Confidence 58999999999999999999987521 110 00112466667788999999999999999999 699998863 5
Q ss_pred eEEEeCCC
Q 009954 250 AVRVRRPT 257 (521)
Q Consensus 250 ~i~v~~~~ 257 (521)
.+.|.+|.
T Consensus 78 vc~i~yAr 85 (97)
T PF04059_consen 78 VCEISYAR 85 (97)
T ss_pred EEEEehhH
Confidence 66777653
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.00 E-value=1.8e-05 Score=73.00 Aligned_cols=84 Identities=18% Similarity=0.314 Sum_probs=62.6
Q ss_pred eEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCee
Q 009954 420 KVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF 499 (521)
Q Consensus 420 ~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~ 499 (521)
.|++++..+..++....+ .--++|++||.|.+|.|-+..+..+.+.+..-+||.|.+.+||.+||....|..+
T Consensus 118 YVigi~pkva~Ee~~~vL-------k~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 118 YVIGIPPKVADEEVAPVL-------KRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred EEecCCCCCCcccccccc-------cchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 345555555555432211 2358899999999999987764444444433369999999999999999999999
Q ss_pred CCcEEEEEEcC
Q 009954 500 GGNTVNAFYYP 510 (521)
Q Consensus 500 ~gr~l~v~~~~ 510 (521)
+|+-|+++|-+
T Consensus 191 DGr~lkatYGT 201 (480)
T COG5175 191 DGRVLKATYGT 201 (480)
T ss_pred cCceEeeecCc
Confidence 99999999854
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.98 E-value=7.3e-06 Score=76.93 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (521)
....+|||.+||..+++.+|.++|.++|.|. .|.|.++++|+.++|-|.|.|.+...|+.|+.-+++..|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3445899999999999999999999999885 47888999999999999999999999999999999999999
Q ss_pred eEEEEEEccC
Q 009954 364 KTLTVRRATA 373 (521)
Q Consensus 364 ~~l~v~~~~~ 373 (521)
..|+|..|..
T Consensus 144 n~ikvs~a~~ 153 (351)
T KOG1995|consen 144 NTIKVSLAER 153 (351)
T ss_pred CCchhhhhhh
Confidence 9999998865
No 155
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.90 E-value=3.3e-05 Score=70.43 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=59.9
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~ 515 (521)
+||+++|+.||.+..+.|-.+. .|.. .|+|-|.|...+||..|++.+||..++|+.+++..+......
T Consensus 98 ~Dl~eLF~~~~~~~r~~vhy~~-~G~s---~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 98 ADLKELFAEFGELKRVAVHYDR-AGRS---LGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQS 165 (243)
T ss_pred HHHHHHHHHhccceEEeeccCC-CCCC---CccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcccc
Confidence 5999999999999999998877 4443 588999999999999999999999999999999987765554
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.90 E-value=2.2e-05 Score=62.52 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=45.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcC-----CeeCCeEEEEE
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-----LKMGDKTLTVR 369 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g-----~~~~g~~l~v~ 369 (521)
..|+|.+++..++.++|+++|+.||.|..|.+..... .|||.|.+++.|+.|+..+.- ..+.+..+++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 3688999999999999999999999999999877532 699999999999999987753 45677776666
Q ss_pred Ec
Q 009954 370 RA 371 (521)
Q Consensus 370 ~~ 371 (521)
..
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 54
No 157
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.88 E-value=1.9e-05 Score=80.03 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=65.3
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe----cCCCCeEEEEecCHHHHHHHH-HccCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAM-ALDGII 245 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~----~~~~g~afV~f~~~~~a~~A~-~l~g~~ 245 (521)
......|||+||++.++++.|...|..||+|.+.. |.-..+ ...+.++||-|.+..+|++|+ .|+|+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvK-------imwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVK-------IMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCccccee-------eecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 34467899999999999999999999999865421 111111 234679999999999999999 799999
Q ss_pred ecCceEEEeCCCC
Q 009954 246 FEGVAVRVRRPTD 258 (521)
Q Consensus 246 ~~g~~i~v~~~~~ 258 (521)
+.+..+++.|.+.
T Consensus 244 v~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 244 VMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeccccc
Confidence 9999999999754
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.87 E-value=0.00014 Score=53.51 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=48.2
Q ss_pred eEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEEe
Q 009954 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVR 254 (521)
Q Consensus 176 ~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v~ 254 (521)
.|+|.|||.+.+...|+.-+.+.-. ..+..|+.+ ..+.|+|.|.+.+.|.+|+ .|+|..+.|.+|.|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsd-------NCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSD-------NCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHH-------TTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhh-------ccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5999999999998888877776544 123346666 3589999999999999999 699999999999999
Q ss_pred CC
Q 009954 255 RP 256 (521)
Q Consensus 255 ~~ 256 (521)
+.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 75
No 159
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.83 E-value=1e-05 Score=73.94 Aligned_cols=83 Identities=27% Similarity=0.295 Sum_probs=69.2
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecC
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 248 (521)
+.......+||+|+.+.+|.+++...|+.||.+.. +.+..+...+..+|||||+|.+.+.+..|+.|++..|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~------~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~ 169 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINR------VTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPG 169 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccc------eeeeccccCCCcceeEEEecccHhhhHHHhhcCCccccc
Confidence 45567789999999999999999999999998532 123444455568999999999999999999999999999
Q ss_pred ceEEEeCCC
Q 009954 249 VAVRVRRPT 257 (521)
Q Consensus 249 ~~i~v~~~~ 257 (521)
+.+.|.+-.
T Consensus 170 ~~i~vt~~r 178 (231)
T KOG4209|consen 170 PAIEVTLKR 178 (231)
T ss_pred ccceeeeee
Confidence 999997643
No 160
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.67 E-value=0.00012 Score=66.52 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=59.4
Q ss_pred EEEcCCC--CCCC---HHHHHHHHHhcCCeeEEEEeecCCCCCc-ceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 297 VFVGGLP--YYFT---ETQIKELLESFGTLHGFDLVKDRDTGNS-KGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 297 l~v~nLp--~~~t---e~~l~~~F~~~G~i~~v~i~~~~~~g~~-~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
|.+.|+- -.++ ++++.+.|++||.|..|.|.-.+..-.. .--.||+|..+++|.+|+-.|||.+|+|+.|...|
T Consensus 284 lllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 284 LLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 5555652 2333 3679999999999999988776532211 12379999999999999999999999999999998
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
...
T Consensus 364 yn~ 366 (378)
T KOG1996|consen 364 YNL 366 (378)
T ss_pred ccH
Confidence 753
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.67 E-value=5.1e-05 Score=70.44 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=70.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGT--LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
.++||+||-+.+|.+||.+.+...|. +.++++..+..+|.++|||+|...+....++.|+.|-.+.|.|..-.|..+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 36999999999999999999987764 7788888888899999999999999999999999999999999887777665
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
.
T Consensus 161 K 161 (498)
T KOG4849|consen 161 K 161 (498)
T ss_pred h
Confidence 4
No 162
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=97.66 E-value=0.0002 Score=59.94 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.1
Q ss_pred CCCCCCCCCccCCCCC
Q 009954 111 RSGFDMAPPAAAMLPG 126 (521)
Q Consensus 111 ~~~~d~~~~~~~~~~~ 126 (521)
...|+.++++|+...+
T Consensus 116 ~~yv~VPp~gf~~~y~ 131 (182)
T PF06495_consen 116 TKYVDVPPPGFEYAYG 131 (182)
T ss_pred eeeccCCCcccccccC
Confidence 3479999999976654
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.66 E-value=0.00012 Score=67.79 Aligned_cols=79 Identities=15% Similarity=0.328 Sum_probs=63.8
Q ss_pred CeEEEcCCCCCCCHHHH------HHHHHhcCCeeEEEEeecCCC-CCcceEE--EEEEcChHHHHHHHHHHcCCeeCCeE
Q 009954 295 DRVFVGGLPYYFTETQI------KELLESFGTLHGFDLVKDRDT-GNSKGYG--FCVYQDPAVTDIACAALNGLKMGDKT 365 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l------~~~F~~~G~i~~v~i~~~~~~-g~~~g~a--fV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (521)
+-+||-+||+.+..+++ .++|.+||.|..|.|-+...+ +...+.+ ||.|.+.|+|..||.+.+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999999877662 578999999998877664322 2222323 99999999999999999999999999
Q ss_pred EEEEEccC
Q 009954 366 LTVRRATA 373 (521)
Q Consensus 366 l~v~~~~~ 373 (521)
|+..|.+.
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99999865
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00034 Score=69.40 Aligned_cols=85 Identities=20% Similarity=0.353 Sum_probs=65.5
Q ss_pred CcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhC
Q 009954 417 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 496 (521)
Q Consensus 417 ~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng 496 (521)
..-.|+++.+.+-.. ..-.+-++.-|.++|+++|+|+++.++.++.+|. +|++|++|++..+|+.|++.|||
T Consensus 56 g~D~vVvv~g~PvV~----~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt----kG~lf~E~~~~~~A~~aVK~l~G 127 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVG----PARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT----KGYLFVEYASMRDAKKAVKSLNG 127 (698)
T ss_pred CcceEEEECCCcccC----hhHHHHHHHHHHHHHHhhccccceeeccCccCCe----eeEEEEEecChhhHHHHHHhccc
Confidence 334456665553332 1234556678899999999999999999987775 59999999999999999999999
Q ss_pred CeeC-CcEEEEEEc
Q 009954 497 RKFG-GNTVNAFYY 509 (521)
Q Consensus 497 ~~~~-gr~l~v~~~ 509 (521)
..|. ++++.|...
T Consensus 128 ~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 128 KRLDKNHTFFVRLF 141 (698)
T ss_pred ceecccceEEeehh
Confidence 9985 566766554
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.53 E-value=0.00084 Score=55.70 Aligned_cols=61 Identities=18% Similarity=0.394 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 440 EEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 440 ~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
+.+..+|.+.|..||+|+-|++.- +..+|.|.+-..|.+|+. |+|..++|+.|+|.+-+++
T Consensus 47 d~l~~~ll~~~~~~GevvLvRfv~-----------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 47 DNLMDELLQKFAQYGEVVLVRFVG-----------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHHHHHCCS-ECEEEEET-----------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHHHHHhCCceEEEEEeC-----------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 456678999999999999888866 456999999999999988 8999999999999987765
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.52 E-value=0.00025 Score=48.63 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=42.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHH
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIAC 353 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al 353 (521)
+.|.|.|.++...+. |..+|..||.|..+.+... .-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 468899999876654 6669999999999887732 337999999999999985
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00035 Score=69.27 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=63.3
Q ss_pred CeEEEcCCCCCCCH------HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC-CeEEE
Q 009954 295 DRVFVGGLPYYFTE------TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLT 367 (521)
Q Consensus 295 ~~l~v~nLp~~~te------~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~ 367 (521)
..|+|.|+|.--.. .-|..+|+++|+|..+.++.+.++| .+||.|++|++..+|+.|++.|||..|. +.++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 47899999864322 3478899999999999999886555 8999999999999999999999998874 66777
Q ss_pred EEEcc
Q 009954 368 VRRAT 372 (521)
Q Consensus 368 v~~~~ 372 (521)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 76543
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.31 E-value=0.00093 Score=52.28 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=51.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEE-EeecC------CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCe-EE
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFD-LVKDR------DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TL 366 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~-i~~~~------~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~l 366 (521)
+-|.|-|.|+. ....|.++|++||.|.+.. +.++. .......+..|+|.++.+|.+||. -||..|+|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 46889899988 5567899999999997764 11100 001123479999999999999999 499999885 55
Q ss_pred EEEEccC
Q 009954 367 TVRRATA 373 (521)
Q Consensus 367 ~v~~~~~ 373 (521)
-|.|+++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 6777743
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.30 E-value=0.00012 Score=65.76 Aligned_cols=64 Identities=11% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHHHHHH-hcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 309 TQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 309 ~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
++|..+|+ +||.|+.+.|-.+. .-.-.|-+||.|...++|++|++.|||.+|.|++|...++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 67888888 99999998665542 334467899999999999999999999999999999998854
No 170
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.27 E-value=0.00077 Score=53.66 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=38.1
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCC-----eeCCcEEEEEEcC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR-----KFGGNTVNAFYYP 510 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~-----~~~gr~l~v~~~~ 510 (521)
++|+++|+.||.|..|.+.+-. -.|||.|.+.+.|+.|+..+.-. .|.+..+++....
T Consensus 16 e~iK~~f~~~g~V~yVD~~~G~---------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 16 EDIKEAFSQFGEVAYVDFSRGD---------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp HHHHHHT-SS--EEEEE--TT----------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred HHHHHHHHhcCCcceEEecCCC---------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 6999999999999999986633 45699999999999999988866 5677777766543
No 171
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.25 E-value=0.00085 Score=45.96 Aligned_cols=52 Identities=19% Similarity=0.527 Sum_probs=43.7
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~ 239 (521)
+.|-|.|.+++..+. +..+|..||. |.++.......+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGe------------I~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGE------------IVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCC------------EEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 468899998887754 5558889998 777777778899999999999999986
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.21 E-value=0.00083 Score=60.31 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=81.4
Q ss_pred HHHHH-HccCceecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 009954 235 ASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKE 313 (521)
Q Consensus 235 a~~A~-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~ 313 (521)
|..|- +|++....|+.+.|.++.. ..|+|.||..-++.+.|..
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------a~l~V~nl~~~~sndll~~ 50 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH------------------------------------AELYVVNLMQGASNDLLEQ 50 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc------------------------------------ceEEEEecchhhhhHHHHH
Confidence 45555 6899999999999998532 2699999999999999999
Q ss_pred HHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc--C--CeeCCeEEEEEEc
Q 009954 314 LLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--G--LKMGDKTLTVRRA 371 (521)
Q Consensus 314 ~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g--~~~~g~~l~v~~~ 371 (521)
.|+.||+|....++.| ..++..+-++|+|...-.|.+|+..+. | ....++++.|...
T Consensus 51 ~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 51 AFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred hhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 9999999998777766 478888999999999999999998873 2 2345666666554
No 173
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.17 E-value=0.00043 Score=65.30 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=72.2
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCC--CCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA--GPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~--~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
.....+|||.+||..+++.+|.++|.++|.|.-..-. ..+.+-++..+...++-|.|.|.+...|+.|+ -+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 3446689999999999999999999999988654332 12233455667788999999999999999999 59999999
Q ss_pred CceEEEeCCCCCC
Q 009954 248 GVAVRVRRPTDYN 260 (521)
Q Consensus 248 g~~i~v~~~~~~~ 260 (521)
+..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999997655433
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.10 E-value=0.00036 Score=62.51 Aligned_cols=71 Identities=21% Similarity=0.443 Sum_probs=61.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC--------CCcce----EEEEEEcChHHHHHHHHHHcCCeeC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT--------GNSKG----YGFCVYQDPAVTDIACAALNGLKMG 362 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~--------g~~~g----~afV~f~~~~~A~~Al~~l~g~~~~ 362 (521)
-.||+++||+.+...-|+++|+.||.|-.|.|.....+ |...+ -|+|+|.+...|..+...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 47999999999999999999999999999998876544 22232 3789999999999999999999999
Q ss_pred CeE
Q 009954 363 DKT 365 (521)
Q Consensus 363 g~~ 365 (521)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 865
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.99 E-value=0.0039 Score=48.78 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=51.2
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCC-CCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCc-e
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSA-GPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV-A 250 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~-~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~-~ 250 (521)
....|.|-|.|+. ....|.++|++||.|+..... .....+.............|+|.++.+|.+||..||..|.|. .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4567999999998 456788999999985321000 000000000244566799999999999999999999999985 4
Q ss_pred EEEeCC
Q 009954 251 VRVRRP 256 (521)
Q Consensus 251 i~v~~~ 256 (521)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 556553
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.89 E-value=0.00076 Score=64.87 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=56.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec---CCCC--Cc--------ceEEEEEEcChHHHHHHHHHHcCC
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD---RDTG--NS--------KGYGFCVYQDPAVTDIACAALNGL 359 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~~g--~~--------~g~afV~f~~~~~A~~Al~~l~g~ 359 (521)
..++|.+.|||.+-..+.|.++|..+|.|..|+|... ++++ .+ +-+|+|+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4478999999999999999999999999999999876 3322 22 347999999999999999988653
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.85 E-value=0.001 Score=63.94 Aligned_cols=72 Identities=15% Similarity=0.283 Sum_probs=52.9
Q ss_pred CcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCC---CCCCCCCC-------CccEEEEEecCHHH
Q 009954 417 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRP---DQNGGETP-------GVGKVFLEYYDAVG 486 (521)
Q Consensus 417 ~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~---~~~~~~~~-------g~g~afV~F~~~~~ 486 (521)
.++++|+..|+...- .| +.|.++|+.+|.|..|.|+.. +.+..... -+-||+|+|...+.
T Consensus 229 l~srtivaenLP~Dh------~~----enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~ 298 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDH------SY----ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEA 298 (484)
T ss_pred cccceEEEecCCcch------HH----HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHH
Confidence 567777766553332 22 689999999999999999988 33322111 14579999999999
Q ss_pred HHHHHHHHhCCe
Q 009954 487 CATAKNALSGRK 498 (521)
Q Consensus 487 A~~Ai~~lng~~ 498 (521)
|.+|.+.||...
T Consensus 299 A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 299 ARKARELLNPEQ 310 (484)
T ss_pred HHHHHHhhchhh
Confidence 999999886544
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.76 E-value=0.0078 Score=44.50 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=40.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc
Q 009954 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (521)
Q Consensus 297 l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 357 (521)
||--..|..+...||.++|+.||.|. |..+.+. -|||.....+.|..|+..+.
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 44444999999999999999999984 5556553 59999999999999999875
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.67 E-value=0.011 Score=41.49 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=45.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHH
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESF---GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 356 (521)
+..|+|.|+.. ++.+||+.+|..| .....|.++.|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35799999855 7778899999988 235688888885 3999999999999999864
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.60 E-value=0.012 Score=49.04 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 309 TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 309 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.+|.+.|..||.+.-|++..+ .-+|.|.+-+.|.+|+. |+|.+++|+.|+|..-++
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 478889999999888887765 38999999999999998 899999999999998765
No 181
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.0051 Score=55.39 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeC
Q 009954 347 AVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTE 426 (521)
Q Consensus 347 ~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 426 (521)
.-|..|-.+|++....|+.+.|.|+.. ....|++|+.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-------------------------------------------a~l~V~nl~~ 41 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-------------------------------------------AELYVVNLMQ 41 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-------------------------------------------ceEEEEecch
Confidence 346677788999999999999999953 3455666665
Q ss_pred cCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCee
Q 009954 427 AITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF 499 (521)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~ 499 (521)
.+..+ .|.+.|..||+|....+..|. .+.+ .+-.+|+|...-.|.+|+...+-.-|
T Consensus 42 ~~snd-------------ll~~~f~~fg~~e~av~~vD~-r~k~---t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 42 GASND-------------LLEQAFRRFGPIERAVAKVDD-RGKP---TREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred hhhhH-------------HHHHhhhhcCccchheeeecc-cccc---cccchhhhhcchhHHHHHHHhccCcc
Confidence 55554 788999999999999888875 3333 24449999999999999998754333
No 182
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.44 E-value=0.019 Score=56.25 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=63.1
Q ss_pred ccCCeEEEeCCCccC-cHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 172 RHARRVYVGGLPPLA-NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~-t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
...+.|-+.-.|+.+ |-++|...|.+||. |.++.+..+.-.|.|+|.+..+|-.|....+..|.++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~------------i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~ 437 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGE------------IENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNNRF 437 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCc------------cccccccCchhhheeeeeccccccchhccccceecCce
Confidence 445667777778876 78899999999998 56666666677899999999999999989999999999
Q ss_pred EEEeCCCC
Q 009954 251 VRVRRPTD 258 (521)
Q Consensus 251 i~v~~~~~ 258 (521)
|+|-|.+.
T Consensus 438 iKl~whnp 445 (526)
T KOG2135|consen 438 IKLFWHNP 445 (526)
T ss_pred eEEEEecC
Confidence 99998654
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.38 E-value=0.0034 Score=62.95 Aligned_cols=76 Identities=25% Similarity=0.254 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee---CCeEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLE-SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTLT 367 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~~l~ 367 (521)
...+.|+|.||--..|.-+|+.++. ..|.|+..+|-+- +..|||.|.+.++|...+.+|||..+ +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3456799999999999999999999 6666777643222 34699999999999999999999765 678999
Q ss_pred EEEccC
Q 009954 368 VRRATA 373 (521)
Q Consensus 368 v~~~~~ 373 (521)
+.|...
T Consensus 516 adf~~~ 521 (718)
T KOG2416|consen 516 ADFVRA 521 (718)
T ss_pred eeecch
Confidence 999854
No 184
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=96.36 E-value=0.007 Score=59.81 Aligned_cols=16 Identities=13% Similarity=-0.120 Sum_probs=7.5
Q ss_pred eCCCccCcHHHHHHHH
Q 009954 180 GGLPPLANEQAIATFF 195 (521)
Q Consensus 180 ~nlp~~~t~~~l~~~f 195 (521)
||--+..|.......|
T Consensus 555 G~~r~klt~~~~lk~r 570 (653)
T KOG2548|consen 555 GNSRPKLTFFECLKSR 570 (653)
T ss_pred CCCCCcccHHHHHHHH
Confidence 4444555654444333
No 185
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=96.31 E-value=0.00057 Score=56.96 Aligned_cols=11 Identities=0% Similarity=-0.070 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 009954 189 QAIATFFSQVM 199 (521)
Q Consensus 189 ~~l~~~f~~~G 199 (521)
++..+++...|
T Consensus 141 eEeiEMmk~MG 151 (196)
T KOG3263|consen 141 EEEIEMMKIMG 151 (196)
T ss_pred HHHHHHHHHhC
Confidence 34455555443
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.11 E-value=0.019 Score=47.01 Aligned_cols=55 Identities=11% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
..|....+.||+|.+|.+.-. --|.|.|.+..+|.+|+.+++. ..-|..+.|+|-
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cGr----------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCGR----------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHHHhcCCcceeeecCC----------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 356667789999999998542 3689999999999999999877 677888999884
No 187
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.06 E-value=0.016 Score=51.13 Aligned_cols=63 Identities=14% Similarity=0.291 Sum_probs=48.5
Q ss_pred HHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh--CCeeCCcEEEEEEcCCCC
Q 009954 442 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS--GRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 442 ~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln--g~~~~gr~l~v~~~~~~~ 513 (521)
.++.|.++|..|+.+..+.+.+. ++-+.|.|.+.++|..|...|+ +..|.|..|+|.|.....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 44689999999999988888774 5889999999999999999999 999999999999985443
No 188
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.87 E-value=0.0043 Score=55.80 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=60.7
Q ss_pred cceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCC---------CCCCCCccEEEEEecCHHHHH
Q 009954 418 LAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQN---------GGETPGVGKVFLEYYDAVGCA 488 (521)
Q Consensus 418 ~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~---------~~~~~g~g~afV~F~~~~~A~ 488 (521)
.+-|+.|.++++-.+- ..|+++|+.||.|=.|.+.+.... ++...-+--++|+|.+.-.|.
T Consensus 73 k~GVvylS~IPp~m~~----------~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK 142 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDP----------VRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAK 142 (278)
T ss_pred cceEEEeccCCCccCH----------HHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHH
Confidence 5668888888766543 389999999999999999876544 333333333699999999999
Q ss_pred HHHHHHhCCeeCCcE
Q 009954 489 TAKNALSGRKFGGNT 503 (521)
Q Consensus 489 ~Ai~~lng~~~~gr~ 503 (521)
.+...|||..|||++
T Consensus 143 ~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 143 RIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHhCCCccCCCC
Confidence 999999999999986
No 189
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.31 E-value=0.012 Score=59.21 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=64.0
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec-
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE- 247 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~- 247 (521)
....++.|+|.||-.-+|..+|+.++..-|.+ |.+.|+.+=+..|||.|.+.++|.... .|||..|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~-----------Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGN-----------VEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCc-----------hHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCC
Confidence 34567789999999999999999999976553 666788888999999999999999988 79999884
Q ss_pred --CceEEEeCCC
Q 009954 248 --GVAVRVRRPT 257 (521)
Q Consensus 248 --g~~i~v~~~~ 257 (521)
++.|.+.|..
T Consensus 509 sNPK~L~adf~~ 520 (718)
T KOG2416|consen 509 SNPKHLIADFVR 520 (718)
T ss_pred CCCceeEeeecc
Confidence 4667776544
No 190
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.30 E-value=0.43 Score=44.38 Aligned_cols=194 Identities=10% Similarity=0.107 Sum_probs=113.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC-------CCCCcceEEEEEEcChHHHHH----HHHHHcC--Cee
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR-------DTGNSKGYGFCVYQDPAVTDI----ACAALNG--LKM 361 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-------~~g~~~g~afV~f~~~~~A~~----Al~~l~g--~~~ 361 (521)
+.|...|+..+++-..+...|-+||+|++|.++.+. +.........+-|-+.+.+.. .|+.|+- ..+
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L 95 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKL 95 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 458899999999999999999999999999999874 112334568899999887654 3444443 457
Q ss_pred CCeEEEEEEccCCCCCchH-HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHH
Q 009954 362 GDKTLTVRRATASGQSKTE-QESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYE 440 (521)
Q Consensus 362 ~g~~l~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~ 440 (521)
....|.|.|..-+-+.... +...... +......+... +....-+.+-++.+...+..++
T Consensus 96 ~S~~L~lsFV~l~y~~~~~~~~~~~~~--~~~~~~~L~~~----------i~~~gATRSl~IeF~~~~~~~d-------- 155 (309)
T PF10567_consen 96 KSESLTLSFVSLNYQKKTDPNDEEADF--SDYLVASLQYN----------IINRGATRSLAIEFKDPVDKDD-------- 155 (309)
T ss_pred CCcceeEEEEEEeccccccccccccch--hhHHhhhhhhe----------eecCCcceEEEEEecCccchhH--------
Confidence 7888888887653322211 1100000 00000111000 0000113333444444433221
Q ss_pred HHHHHHHHhhcccc----ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcC
Q 009954 441 EILEDMREECGKYG----TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 510 (521)
Q Consensus 441 ~~~~dl~~~f~~fG----~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~ 510 (521)
.+++.| .+...=+ .|+.|.|+....... .-|..+|.+.|-++..|...+.-|.-....-..-+|.|++
T Consensus 156 l~~~kL-~fL~~~~n~RYVlEsIDlVna~~~~~-~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs 227 (309)
T PF10567_consen 156 LIEKKL-PFLKNSNNKRYVLESIDLVNADEPSK-HFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVS 227 (309)
T ss_pred HHHHhh-hhhccCCCceEEEEEEEEeccCcccc-cCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEe
Confidence 233344 3333333 478888877553322 3466889999999999999998877443333344566654
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.20 E-value=0.059 Score=53.96 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=55.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHH--hcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcC--CeeCCeEEEEE
Q 009954 295 DRVFVGGLPYYFTETQIKELLE--SFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVR 369 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~--~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v~ 369 (521)
+.|.|+.||..+-+++|+.+|. .+-.+.+|.+..+.. =||.|++..||+.|.+.|.- ..|.|++|...
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4578999999999999999999 477788887765531 59999999999999988854 45777777654
No 192
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.98 E-value=0.03 Score=52.56 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=59.0
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHH-ccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 250 (521)
...-++|||||-+.+|.++|.+.+...|... +...+-+.+..-+.++|||+|...+....++.|+ |-...|.|+.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~----~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQ----FADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHH----HhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 3345799999999999999999988877521 0011112333346789999999999999999995 7778899987
Q ss_pred EEEeC
Q 009954 251 VRVRR 255 (521)
Q Consensus 251 i~v~~ 255 (521)
-.|..
T Consensus 154 P~V~~ 158 (498)
T KOG4849|consen 154 PTVLS 158 (498)
T ss_pred Ceeec
Confidence 66643
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.92 E-value=0.079 Score=43.46 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=53.4
Q ss_pred CeEEEcCCCCCC----CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 295 DRVFVGGLPYYF----TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 295 ~~l~v~nLp~~~----te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
.+|.|+=|..++ +...|...++.||+|.+|.+... -.|.|.|.+..+|.+|+.+++. ..-|..+.+.|
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 467776655543 33456677789999999976432 2599999999999999999865 56778888888
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
-..
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 643
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.82 E-value=0.017 Score=56.64 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=50.8
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~ 511 (521)
.+|-.+|.+||+|+.|.|.... =-|.|+|.+..+|-.|.. .++..|+||-|+|.|.+.
T Consensus 388 a~ln~hfA~fG~i~n~qv~~~~---------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 388 ADLNPHFAQFGEIENIQVDYSS---------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhhhhhcCccccccccCch---------hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 5899999999999999997652 135999999999988876 599999999999999876
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.63 E-value=0.014 Score=55.14 Aligned_cols=78 Identities=18% Similarity=0.329 Sum_probs=62.0
Q ss_pred eEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeecCC--CCC-cceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 296 RVFVGGLPYYFTETQIK---ELLESFGTLHGFDLVKDRD--TGN-SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~--~g~-~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
-+||-+|+..+..+.+. +.|.+||.|..|.+..++. .+. ...-+||.|...++|..||...+|+.+.|+.|+..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47888999887666554 4788999999998888752 111 12238999999999999999999999999998888
Q ss_pred EccC
Q 009954 370 RATA 373 (521)
Q Consensus 370 ~~~~ 373 (521)
+...
T Consensus 159 ~gtt 162 (327)
T KOG2068|consen 159 LGTT 162 (327)
T ss_pred hCCC
Confidence 8776
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.53 E-value=0.018 Score=54.31 Aligned_cols=65 Identities=17% Similarity=0.300 Sum_probs=51.3
Q ss_pred HHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCC
Q 009954 447 REECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 447 ~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~ 511 (521)
.+.|.+||.|.+|.+.++...-....+..-+||.|...++|..||...+|+.+.|+.|++.+.+.
T Consensus 98 ~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 98 TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCC
Confidence 46799999999999988763111111222279999999999999999999999999998887553
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.46 E-value=0.27 Score=39.36 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=42.0
Q ss_pred HHHHHhhcccc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCC
Q 009954 444 EDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG 501 (521)
Q Consensus 444 ~dl~~~f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~g 501 (521)
++|..+.+.+- .|..++|.++.. ++.-.+.++|.+.++|..=...+||+.|+-
T Consensus 28 d~l~~f~~~~~~~i~~~riird~~-----pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 28 DFLLFFGAPFREDIEHIRIIRDGT-----PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred HHHHHhhhcccccEEEEEEeeCCC-----CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 46666666655 478889999773 234679999999999999999999999764
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.45 E-value=0.17 Score=46.89 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=61.1
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecC-ceEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG-VAVR 252 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g-~~i~ 252 (521)
...|-|-|+|+..+ .-|..+|.+||. |++........+-+|.|.+.-+|.+||..||+.|.| ..|-
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~------------Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~vmiG 263 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGE------------VVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIG 263 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCe------------eeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccceEEe
Confidence 55688889988755 467789999998 666666667779999999999999999999999988 4577
Q ss_pred EeCCCCCCcc
Q 009954 253 VRRPTDYNPT 262 (521)
Q Consensus 253 v~~~~~~~~~ 262 (521)
|..+.+....
T Consensus 264 VkpCtDksvi 273 (350)
T KOG4285|consen 264 VKPCTDKSVI 273 (350)
T ss_pred eeecCCHHHh
Confidence 7776655443
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.32 E-value=0.56 Score=37.55 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=48.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (521)
.+.+...|..++-++|..+.+.+-. |..++|+++. ...+-.+++.|.+.+.|..-...+||+.|+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445455555666677766665544 7788999873 3356689999999999999999999988753
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.19 E-value=0.086 Score=48.81 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=46.0
Q ss_pred HHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEE-EEEEcCC
Q 009954 445 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTV-NAFYYPE 511 (521)
Q Consensus 445 dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l-~v~~~~~ 511 (521)
.|-.+|+.||+|++..... +| ...+|.|.+.-+|.+||.. ||+.|+|..+ -|.-++.
T Consensus 212 ~vL~~F~~cG~Vvkhv~~~---ng------NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVKHVTPS---NG------NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred HHHHHHHhhCeeeeeecCC---CC------ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 7889999999999988874 33 3679999999999999995 9999988654 3555443
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.08 E-value=0.059 Score=47.41 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=50.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHh-cCCe---eEEEEeecC-CCC-CcceEEEEEEcChHHHHHHHHHHcCCeeC---C--
Q 009954 295 DRVFVGGLPYYFTETQIKELLES-FGTL---HGFDLVKDR-DTG-NSKGYGFCVYQDPAVTDIACAALNGLKMG---D-- 363 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~-~G~i---~~v~i~~~~-~~g-~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g-- 363 (521)
.+|.|++||+.+|++++.+.++. ++.. ..+.-.... ... ..-.-|||.|.+.+++..-+..++|+.|- |
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 58999999999999999987776 6655 333311211 111 12345999999999999999999997762 2
Q ss_pred eEEEEEEccC
Q 009954 364 KTLTVRRATA 373 (521)
Q Consensus 364 ~~l~v~~~~~ 373 (521)
....|.+|--
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 4456777644
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.01 E-value=0.036 Score=58.24 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=61.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee--CCeEEEEEEccC
Q 009954 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--GDKTLTVRRATA 373 (521)
Q Consensus 297 l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~l~v~~~~~ 373 (521)
..+.|.+...+-.-|..+|++||.|.+++..++-. .|.|+|.+.+.|..|+++|+|+.+ -|.+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44566667778888999999999999999888743 699999999999999999999764 688999999987
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.34 E-value=0.22 Score=43.95 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc--CCeeCCeEEEEEEccC
Q 009954 307 TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVRRATA 373 (521)
Q Consensus 307 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v~~~~~ 373 (521)
..+.|.++|..|+.+..+.+.+. -+-..|.|.+.++|..|...|+ +..+.|..++|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34789999999999888776654 2248999999999999999999 9999999999999954
No 204
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.74 E-value=0.12 Score=53.11 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=55.0
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....-+|||+|+...+..+-++..+..+|.+..+ ... .|||..|..+..+..|+ .++...+.|.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~------------kr~---~fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSW------------KRD---KFGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhh------------hhh---hhcccchhhHHHHHHHHHHhcccCCCcc
Confidence 3445689999999999999999999999875332 111 29999999999999999 5777888887
Q ss_pred eEEEe
Q 009954 250 AVRVR 254 (521)
Q Consensus 250 ~i~v~ 254 (521)
.+.++
T Consensus 102 kl~~~ 106 (668)
T KOG2253|consen 102 KLIEN 106 (668)
T ss_pred hhhcc
Confidence 77665
No 205
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.52 E-value=0.72 Score=32.46 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=37.9
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~ 239 (521)
..|+|.|+ .+++.++|+.+|..|.... . +..--++. -.-|-|.|.+.+.|.+||
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~------~--~~~IEWId--DtScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEE------G--PFRIEWID--DTSCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccC------C--CceEEEec--CCcEEEEECCHHHHHHHH
Confidence 47999999 4588899999999992110 0 12112222 235789999999999999
No 206
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.16 E-value=1.6 Score=32.56 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=34.4
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
.||.++|++||.|.=--|.- .-|||...+.+.|..|+..++
T Consensus 23 ~DI~qlFspfG~I~VsWi~d-----------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 23 SDIYQLFSPFGQIYVSWIND-----------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHCCCCCCEEEEEECT-----------TEEEEEECCCHHHHHHHHHHT
T ss_pred hhHHHHhccCCcEEEEEEcC-----------CcEEEEeecHHHHHHHHHHhc
Confidence 59999999999987555522 368999999999999999875
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.00 E-value=1.2 Score=32.89 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHhcCC-----eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 304 YYFTETQIKELLESFGT-----LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 304 ~~~te~~l~~~F~~~G~-----i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
..++..+|..++...+. |-.|.|... |+||+-... .|..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34778889998887654 446776654 799998755 688899999999999999999864
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.64 E-value=0.37 Score=47.42 Aligned_cols=67 Identities=18% Similarity=0.351 Sum_probs=52.0
Q ss_pred CcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcccc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 417 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 417 ~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
.-..|+.+++.++.- ||..|+..|- .|.+|+|+++.... .-.+.|+|.+.++|..-.+.+|
T Consensus 75 ~mLcilaVP~~mt~~-------------Dll~F~~~~~~~I~~irivRd~~pn-----rymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 75 TMLCILAVPAYMTSH-------------DLLRFCASFIKQISDIRIVRDGMPN-----RYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred cEEEEEeccccccHH-------------HHHHHHHHHhhhhheeEEeecCCCc-----eEEEEEEeccchhHHHHHHHcC
Confidence 334455566665554 8888888776 49999999976333 3578999999999999999999
Q ss_pred CCeeCC
Q 009954 496 GRKFGG 501 (521)
Q Consensus 496 g~~~~g 501 (521)
|..|+-
T Consensus 137 Gk~Fn~ 142 (493)
T KOG0804|consen 137 GKQFNS 142 (493)
T ss_pred CCcCCC
Confidence 999875
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.59 E-value=0.99 Score=44.52 Aligned_cols=68 Identities=18% Similarity=0.293 Sum_probs=58.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (521)
.+.|+|-.+|..++..||..|+..|-. |..|+|++|.. ..+=.++|.|.+.++|..-.+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 467999999999999999999997665 88999999642 224468999999999999999999988753
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.61 E-value=0.41 Score=50.72 Aligned_cols=72 Identities=13% Similarity=0.242 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCee--CCcEEEEEEcCCCC
Q 009954 436 DEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF--GGNTVNAFYYPEDK 513 (521)
Q Consensus 436 ~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~--~gr~l~v~~~~~~~ 513 (521)
+.....+-.-|..+|.+||.|.++...++. ..|.|+|.+.+.|-.|+.+|+|..+ -|-+.+|.|+....
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTLRDL---------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheecccc---------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 334445556899999999999999998864 5789999999999999999999984 67889999988776
Q ss_pred ccc
Q 009954 514 YFN 516 (521)
Q Consensus 514 ~~~ 516 (521)
|++
T Consensus 376 ~~e 378 (1007)
T KOG4574|consen 376 MYE 378 (1007)
T ss_pred ccc
Confidence 654
No 211
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=88.97 E-value=0.45 Score=48.15 Aligned_cols=16 Identities=25% Similarity=0.719 Sum_probs=9.1
Q ss_pred HHHHHHhcCCeeEEEE
Q 009954 311 IKELLESFGTLHGFDL 326 (521)
Q Consensus 311 l~~~F~~~G~i~~v~i 326 (521)
|++++.+||.-..+.|
T Consensus 520 LRevLKKyG~nvGL~i 535 (752)
T KOG0670|consen 520 LREVLKKYGRNVGLHI 535 (752)
T ss_pred HHHHHHHhCcccceee
Confidence 6666666665444433
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.36 E-value=0.58 Score=48.39 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
....++||+|+...+..+-++.+...+|-|.++.... |+|++|....-+..|+..|+-..++|..+.+..-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3446899999999999999999999999998776543 8999999999999999999988888888776653
No 213
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=87.20 E-value=0.29 Score=44.67 Aligned_cols=82 Identities=23% Similarity=0.501 Sum_probs=54.8
Q ss_pred CCCCeEEEcCCCCCC------------CHHHHHHHHHhcCCeeEEEEee-cC----CCCCcc-----eE---------EE
Q 009954 292 EGPDRVFVGGLPYYF------------TETQIKELLESFGTLHGFDLVK-DR----DTGNSK-----GY---------GF 340 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~------------te~~l~~~F~~~G~i~~v~i~~-~~----~~g~~~-----g~---------af 340 (521)
+.+.+|++.+||..+ +++-|+..|+.||.|..|.|+. |+ .+|... || ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 456788888888643 5678999999999999988764 22 244432 33 45
Q ss_pred EEEcChHHHHHHHHHHcCCee----C----CeEEEEEEccC
Q 009954 341 CVYQDPAVTDIACAALNGLKM----G----DKTLTVRRATA 373 (521)
Q Consensus 341 V~f~~~~~A~~Al~~l~g~~~----~----g~~l~v~~~~~ 373 (521)
|+|..-..-..|+.+|-|..+ . .-.|+|.|...
T Consensus 227 vqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 677666666778888877543 2 23566666544
No 214
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.78 E-value=0.53 Score=35.82 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=44.1
Q ss_pred EEEEecCHHHHHHHHHc--cCceecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCC
Q 009954 225 AFVEMRTVEEASNAMAL--DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGL 302 (521)
Q Consensus 225 afV~f~~~~~a~~A~~l--~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL 302 (521)
|+|+|....-|+..+.+ +...+.+..+.|.-.. +... ....+. . -.....++|.|.||
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P-~~~~---------~~~k~q---v-------~~~vs~rtVlvsgi 60 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSP-VTLG---------HLQKFQ---V-------FSGVSKRTVLVSGI 60 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEe-EecC---------CceEEE---E-------EEcccCCEEEEeCC
Confidence 68999999999999954 4455666666554210 0000 000000 0 00133478999999
Q ss_pred CCCCCHHHHHHHHH
Q 009954 303 PYYFTETQIKELLE 316 (521)
Q Consensus 303 p~~~te~~l~~~F~ 316 (521)
|...++++|++.++
T Consensus 61 p~~l~ee~l~D~Le 74 (88)
T PF07292_consen 61 PDVLDEEELRDKLE 74 (88)
T ss_pred CCCCChhhheeeEE
Confidence 99999999987654
No 215
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=86.69 E-value=0.35 Score=50.94 Aligned_cols=6 Identities=0% Similarity=-0.430 Sum_probs=3.0
Q ss_pred EEEEec
Q 009954 477 VFLEYY 482 (521)
Q Consensus 477 afV~F~ 482 (521)
+||.|.
T Consensus 972 ~~v~~d 977 (1194)
T KOG4246|consen 972 EAVVID 977 (1194)
T ss_pred ceeeec
Confidence 455554
No 216
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=84.91 E-value=2.4 Score=43.02 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=38.3
Q ss_pred HHHHHhhcc--ccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCe--eCCcEEEE
Q 009954 444 EDMREECGK--YGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK--FGGNTVNA 506 (521)
Q Consensus 444 ~dl~~~f~~--fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~--~~gr~l~v 506 (521)
++|+.+|.. +-.+++|.+.-+. -=||.|++..||+.|.+-|.-.. |-|+.|.+
T Consensus 190 e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 190 EVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred HHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 689999985 4468888876653 23999999999999987765433 55555443
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.44 E-value=4.6 Score=28.93 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=39.4
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEE
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNA 506 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v 506 (521)
+||+..+..|+- ..|..-+ + | -||-|.+..+|+++....+|..+.+..|.+
T Consensus 15 ~d~K~~Lr~y~~-~~I~~d~---t-------G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 15 EDFKKRLRKYRW-DRIRDDR---T-------G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHhcCCc-ceEEecC---C-------E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 588888888853 3444433 2 3 399999999999999999999998877654
No 218
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=81.35 E-value=0.64 Score=40.94 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=41.3
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHH-HHHhhcCCCCCCCCceEEEE--ecC------CCCeEEEEecCHHHHHHHH-Hcc
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVY--INH------EKKFAFVEMRTVEEASNAM-ALD 242 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~~~~~~~~~~~~v~~~~--~~~------~~g~afV~f~~~~~a~~A~-~l~ 242 (521)
...+|.|++||+++|++++.+.+.. ++.... ...+. ... .-.-|||.|.+.+++.... .++
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~---------w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD---------WYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE------------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccc---------eEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC
Confidence 3458999999999999999886665 332100 01111 111 1247999999999988888 699
Q ss_pred CceecC
Q 009954 243 GIIFEG 248 (521)
Q Consensus 243 g~~~~g 248 (521)
|..|.+
T Consensus 77 g~~F~D 82 (176)
T PF03467_consen 77 GHVFVD 82 (176)
T ss_dssp TEEEE-
T ss_pred CcEEEC
Confidence 988754
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.21 E-value=7.5 Score=28.57 Aligned_cols=53 Identities=19% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHHhhcccc-----ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 445 DMREECGKYG-----TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 445 dl~~~f~~fG-----~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
+|..++..-+ .|-.|.|..+ ++||+-.. +.|..++..|++..+.|++|+|..+
T Consensus 17 ~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 17 DIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4544444432 5777888663 56888765 5899999999999999999999754
No 220
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.37 E-value=11 Score=27.09 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEE
Q 009954 305 YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (521)
Q Consensus 305 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (521)
.++-++|+..+..|+-. +|..+. +| =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999643 333442 32 499999999999999999999888776654
No 221
>PF02956 TT_ORF1: TT viral orf 1; InterPro: IPR004219 Torque teno virus, isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein.
Probab=74.47 E-value=2.7 Score=43.93 Aligned_cols=11 Identities=9% Similarity=-0.161 Sum_probs=4.5
Q ss_pred cHHHHHHHHHH
Q 009954 187 NEQAIATFFSQ 197 (521)
Q Consensus 187 t~~~l~~~f~~ 197 (521)
|-+.|.+.+..
T Consensus 117 sL~~Ly~e~~~ 127 (525)
T PF02956_consen 117 SLQYLYDEHLR 127 (525)
T ss_pred EHHHHHHHHHH
Confidence 33444444433
No 222
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=73.32 E-value=7.3 Score=27.30 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhccccceeEEEecCCCCC
Q 009954 440 EEILEDMREECGKYGTLVNVVIPRPDQN 467 (521)
Q Consensus 440 ~~~~~dl~~~f~~fG~I~~v~i~~~~~~ 467 (521)
+.|..+|+++|+..|+|.-+.+....++
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~~eS~ 32 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNPYESD 32 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEcccccC
Confidence 4677899999999999987777555433
No 223
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=73.15 E-value=3.8 Score=37.06 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=8.2
Q ss_pred cceEEEEEEcChH
Q 009954 335 SKGYGFCVYQDPA 347 (521)
Q Consensus 335 ~~g~afV~f~~~~ 347 (521)
++-.|.|+|..++
T Consensus 215 SKQHaviQyR~v~ 227 (293)
T KOG1882|consen 215 SKQHAVIQYRLVE 227 (293)
T ss_pred cccceeeeeeecc
Confidence 4556777776655
No 224
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=72.97 E-value=9.5 Score=35.40 Aligned_cols=49 Identities=4% Similarity=0.007 Sum_probs=40.5
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHH
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEE 234 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~ 234 (521)
..|+++||+.++.-.+|+..+.+.|.. ...+....+.|-||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-----------pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-----------PMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-----------ceeEeeecCCcceeEecCCccC
Confidence 349999999999999999999987642 5666777788999999987654
No 225
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=71.67 E-value=1.7 Score=39.83 Aligned_cols=76 Identities=30% Similarity=0.440 Sum_probs=48.9
Q ss_pred CCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCC-----CCCCC----CCCccE-------EEE
Q 009954 416 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPD-----QNGGE----TPGVGK-------VFL 479 (521)
Q Consensus 416 ~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~-----~~~~~----~~g~g~-------afV 479 (521)
..|++.++|......+ |.. ++-|+..|+.||.|..|.|+.-. .+|.. -.|+|+ |||
T Consensus 156 ~ip~kwf~lkedg~~d-lps-------e~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 156 GIPCKWFALKEDGSED-LPS-------EDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCcceeeeeccccccc-CCh-------HHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3666777765443222 111 14899999999999999987643 22322 234443 678
Q ss_pred EecCHHHHHHHHHHHhCCee
Q 009954 480 EYYDAVGCATAKNALSGRKF 499 (521)
Q Consensus 480 ~F~~~~~A~~Ai~~lng~~~ 499 (521)
+|-.--.-..|+..|.|+.+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 87777777778888887764
No 226
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.30 E-value=31 Score=35.70 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=63.8
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeecC----------CCCC---------------------
Q 009954 291 AEGPDRVFVGGLPYY-FTETQIKELLESF----GTLHGFDLVKDR----------DTGN--------------------- 334 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~-~te~~l~~~F~~~----G~i~~v~i~~~~----------~~g~--------------------- 334 (521)
...+++|-|.||.++ +.-.||.-+|+.| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 355678999999988 7788999999854 478888887532 1121
Q ss_pred ----------------cceEEEEEEcChHHHHHHHHHHcCCeeC--CeEEEEEEccC
Q 009954 335 ----------------SKGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTVRRATA 373 (521)
Q Consensus 335 ----------------~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~v~~~~~ 373 (521)
.-=||.|+|.+++.|.+....++|+.|. +..|-+.|...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 0127999999999999999999999885 67777888754
No 227
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=68.23 E-value=14 Score=26.75 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 309 TQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 309 ~~l~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
++|.+.|...|- |..|.-+....++.....-||+++...+...+ ++=..+++..|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 468888887775 77888777766777788889999887664443 333678999999998754
No 228
>PF02956 TT_ORF1: TT viral orf 1; InterPro: IPR004219 Torque teno virus, isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein.
Probab=67.11 E-value=5.1 Score=41.92 Aligned_cols=15 Identities=0% Similarity=0.166 Sum_probs=7.1
Q ss_pred CcHHHHHHHHHHHHH
Q 009954 186 ANEQAIATFFSQVMT 200 (521)
Q Consensus 186 ~t~~~l~~~f~~~G~ 200 (521)
+..=.|..++.++-.
T Consensus 113 ~~~fsL~~Ly~e~~~ 127 (525)
T PF02956_consen 113 TMTFSLQYLYDEHLR 127 (525)
T ss_pred CcEEEHHHHHHHHHH
Confidence 334445555555543
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.91 E-value=4.6 Score=34.46 Aligned_cols=120 Identities=14% Similarity=0.082 Sum_probs=74.5
Q ss_pred eEEEeCCC--ccCcHHHHHHHHHHH-HHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEE
Q 009954 176 RVYVGGLP--PLANEQAIATFFSQV-MTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (521)
Q Consensus 176 ~l~v~nlp--~~~t~~~l~~~f~~~-G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~ 252 (521)
...|+.+. ...+-..|...+... +. . ..+.-..+ ..++..+.|.+.+++.+++......+.+..+.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~-~--------~~~~i~~l--~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~ 85 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKL-K--------GGVKIRDL--GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLI 85 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCC-C--------CcEEEEEe--CCCeEEEEEEeccceeEEEecccccccccchh
Confidence 34455442 235666777766653 11 0 01222222 56899999999999999998777788888787
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeec
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKD 329 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~ 329 (521)
++.-.+...... . . .....-=|.|.|||.. .+++-|..+.+.+|.+..+.....
T Consensus 86 l~~W~~~~~~~~-------~--~--------------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 86 LQRWSPDFNPSE-------V--K--------------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhcccccccc-------c--c--------------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 764321111000 0 0 0001123678999988 788889999999999988875543
No 230
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=63.94 E-value=8.7 Score=34.82 Aligned_cols=8 Identities=25% Similarity=0.206 Sum_probs=2.9
Q ss_pred EecCHHHH
Q 009954 228 EMRTVEEA 235 (521)
Q Consensus 228 ~f~~~~~a 235 (521)
.|..+.+|
T Consensus 160 ~y~eppea 167 (293)
T KOG1882|consen 160 KYNEPPEA 167 (293)
T ss_pred EecCCchh
Confidence 33333333
No 231
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=60.72 E-value=9.6 Score=33.04 Aligned_cols=58 Identities=12% Similarity=0.223 Sum_probs=44.5
Q ss_pred HHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCc-EEEEEEcCC
Q 009954 445 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN-TVNAFYYPE 511 (521)
Q Consensus 445 dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr-~l~v~~~~~ 511 (521)
....+|-.|-+..-..+.+ +++..-|.|.+++.|..|...++...|.|. .+++.|+..
T Consensus 31 ~~~~lFrq~n~~~~fq~lr---------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLLR---------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHhHHhhhCcchHHHHHH---------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 4456666666655555544 357789999999999999999999999998 777777543
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=59.95 E-value=51 Score=30.80 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=35.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecCCCCCcceEEEEEEcCh
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDP 346 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~ 346 (521)
.-|+|+||+.++--.||+..+.+.+.+ .+|.+.- ..|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 349999999999999999999987653 4454432 256799999764
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.25 E-value=13 Score=30.16 Aligned_cols=50 Identities=10% Similarity=0.220 Sum_probs=28.3
Q ss_pred eEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHH
Q 009954 296 RVFVGGLPYYF---------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348 (521)
Q Consensus 296 ~l~v~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 348 (521)
++.|.|++... +.+.|.+.|+.|.++. ++...++ ....|+++|+|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChH
Confidence 56777886543 4478999999999875 4444543 2568999999987554
No 234
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=57.90 E-value=13 Score=32.21 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=52.6
Q ss_pred CCeEEEcCCCCCCCH-----HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCe-EEE
Q 009954 294 PDRVFVGGLPYYFTE-----TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TLT 367 (521)
Q Consensus 294 ~~~l~v~nLp~~~te-----~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~ 367 (521)
++.+.+.+++..+-. .....+|-+|......++++. .+..-|-|.+++.|..|...+++..|.|. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 356777777765422 234555666655554444443 44677889999999999999999999988 888
Q ss_pred EEEccC
Q 009954 368 VRRATA 373 (521)
Q Consensus 368 v~~~~~ 373 (521)
.-++++
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 888876
No 235
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.88 E-value=7.6 Score=38.14 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.7
Q ss_pred CcHHHHHHHHHHH
Q 009954 186 ANEQAIATFFSQV 198 (521)
Q Consensus 186 ~t~~~l~~~f~~~ 198 (521)
++++++..-+...
T Consensus 361 LSe~E~~arl~eM 373 (450)
T KOG3869|consen 361 LSEAERAARLREM 373 (450)
T ss_pred ccHHHHHHHHHHH
Confidence 4555555555444
No 236
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.59 E-value=41 Score=33.02 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=47.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHH
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 355 (521)
+-...|-|.++|...-.+||...|+.|+. =..|+++-+. .||..|.+...|..||-.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34567889999999999999999999976 3467777664 699999999999999873
No 237
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=51.22 E-value=39 Score=24.38 Aligned_cols=62 Identities=26% Similarity=0.228 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 309 TQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 309 ~~l~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
++|.+.|..+|- +..|.-+....++.+...-||+.....+-.. .|+=..|+|+.|.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 468889998885 8888888877777777888898877654333 2334678999999987654
No 238
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.41 E-value=91 Score=32.46 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=56.0
Q ss_pred hccCCeEEEeCCCcc-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC----------------------------
Q 009954 171 TRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE---------------------------- 221 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~---------------------------- 221 (521)
...++.|-|.||.+. +...+|.-+|+.|-+ ++..|+.|.+..+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP--------~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~ 242 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLP--------KGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKE 242 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcC--------CCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcc
Confidence 455788999999997 799999999998833 2333444444110
Q ss_pred -------------------------CCeEEEEecCHHHHHHHH-HccCceecCc--eEEEeC
Q 009954 222 -------------------------KKFAFVEMRTVEEASNAM-ALDGIIFEGV--AVRVRR 255 (521)
Q Consensus 222 -------------------------~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~i~v~~ 255 (521)
--||.|+|.+.+.|.... .++|..|... .|-+.+
T Consensus 243 s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 243 SESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred cccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 028999999999999998 7999998753 444444
No 239
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=45.78 E-value=1.1e+02 Score=23.26 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=41.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHH
Q 009954 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (521)
Q Consensus 297 l~v~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 356 (521)
-|+--.+..++..+|++.++. ||. |..|....-+ .+ .--|||.+..-..|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHhh
Confidence 344456788999999999995 554 6777666553 22 335999999999888776544
No 240
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=43.40 E-value=92 Score=25.42 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=41.7
Q ss_pred cccCCChHHHHHHHHHHHHhhccccce-eEEEec-CCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEE
Q 009954 430 ADALADDEEYEEILEDMREECGKYGTL-VNVVIP-RPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 507 (521)
Q Consensus 430 ~~~~~~~~~~~~~~~dl~~~f~~fG~I-~~v~i~-~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~ 507 (521)
.+++..+..+..+.+.+.++|+.||-= ....+. -+..+ +.|+.=+.=...+.+..||..++. ++|..+.+.
T Consensus 26 ~~~~~~~~l~~~Ir~av~~~fGd~G~~~~~~~li~f~~~t-----~~gIlRc~R~~~~~v~aAL~li~~--i~~~~v~ir 98 (120)
T PRK03717 26 ERPFTKDEIKKAIWEASLSTLGELGTARAKPWFIKFDEKT-----QTGIVRCDRKHVEELRFALTLVTE--INGSKAIIR 98 (120)
T ss_pred CCCCCHHHHHHHHHHHHHHHcChhhhccccceEEEEeCCC-----CEEEEEcCchhHHHHHHHHHHHHh--CCCeeEEEE
Confidence 345666778999999999999999951 111111 12211 234333333445567777777663 566665443
No 241
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=43.06 E-value=2.7 Score=33.85 Aligned_cols=8 Identities=25% Similarity=0.380 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 009954 129 VPGQLPGV 136 (521)
Q Consensus 129 ~~g~~p~~ 136 (521)
..|.||+.
T Consensus 89 yy~nfpp~ 96 (146)
T PF11671_consen 89 YYGNFPPR 96 (146)
T ss_pred EecCCCCC
Confidence 33444433
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.08 E-value=68 Score=22.58 Aligned_cols=19 Identities=11% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCeeEEEEe
Q 009954 309 TQIKELLESFGTLHGFDLV 327 (521)
Q Consensus 309 ~~l~~~F~~~G~i~~v~i~ 327 (521)
++|+++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999766553
No 243
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=40.73 E-value=1.5e+02 Score=22.01 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=40.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHH
Q 009954 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (521)
Q Consensus 297 l~v~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 356 (521)
-|+-.++..++..+|+..++. ||. |..|....-+ . ..--|||.+..-+.|...-..|
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~--~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-R--GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CceEEEEEECCCCcHHHHHHhh
Confidence 455567889999999999995 554 6677655543 2 2335999999988887765543
No 244
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=40.22 E-value=1.3e+02 Score=23.16 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEE
Q 009954 436 DEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAF 507 (521)
Q Consensus 436 ~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~ 507 (521)
++.|..+.+.|.+.|.-- .-..+.|......|. +|.+.+.++=..|+..+ ...-.+++|++.
T Consensus 24 d~~~~~L~~kI~~~f~l~-~~~~~~l~Y~Dedgd--------~V~l~~D~DL~~a~~~~-~~~~~~~~lrl~ 85 (91)
T cd06398 24 DLNMDGLREKVEELFSLS-PDADLSLTYTDEDGD--------VVTLVDDNDLTDAIQYF-CSGSRLNPLRID 85 (91)
T ss_pred CCCHHHHHHHHHHHhCCC-CCCcEEEEEECCCCC--------EEEEccHHHHHHHHHHH-hccCCCceEEEE
Confidence 567888999999999753 223333322222443 99999999999999974 222344555554
No 245
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=39.15 E-value=76 Score=25.84 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=34.4
Q ss_pred EEEEecC--------HHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcccccCC
Q 009954 477 VFLEYYD--------AVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYS 520 (521)
Q Consensus 477 afV~F~~--------~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~~~~~~ 520 (521)
|||+|.+ .+-|..=++.+|.+.=-|..|.|.-++-++ +|.++
T Consensus 21 AFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide--~GKis 70 (129)
T COG1098 21 AFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE--NGKIS 70 (129)
T ss_pred eEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc--CCCcc
Confidence 7888888 567888888999998899999999988877 55543
No 246
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.42 E-value=4.9 Score=40.89 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=52.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeE
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (521)
.+.|||.|+++.++-++|..+|..+-.+..+.+.....-....-+++|.|.---....|+-+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 356999999999999999999998877666655444322333446889998777777777778876665433
No 247
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=37.53 E-value=43 Score=24.16 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=41.5
Q ss_pred HHHHhhcccc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 445 DMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 445 dl~~~f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
+|.+.|..+| .+..|.-+....+..+ ....||+-+...+-.. .|+=..|+|+.|.|.-.
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P---~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNP---QNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCc---ceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 6777778888 5888888777655544 5667888877655444 34556689999888754
No 248
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=36.63 E-value=63 Score=24.37 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=27.1
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCC
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG 501 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~g 501 (521)
.|.+|..+..- +|+.|||=.+..+...|+..+.+....-
T Consensus 33 ~I~Si~~~~~l--------kGyIyVEA~~~~~V~~ai~gi~~i~~~~ 71 (84)
T PF03439_consen 33 NIYSIFAPDSL--------KGYIYVEAERESDVKEAIRGIRHIRGSR 71 (84)
T ss_dssp ---EEEE-TTS--------TSEEEEEESSHHHHHHHHTT-TTEEEEC
T ss_pred ceEEEEEeCCC--------ceEEEEEeCCHHHHHHHHhcccceeecc
Confidence 67777776643 4999999999999999999887755433
No 249
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=36.51 E-value=95 Score=27.06 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=37.8
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEE
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTV 504 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l 504 (521)
++|.++-+ |.+..|.+.+..... ..-+|-.||.|.+.++|...++. .+..++-..|
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~~k~--~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el 179 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHGNKA--HPFKGSVKVTFQTKEQAFANDDT-HEEKGAETEL 179 (205)
T ss_pred HHHHHHhc--ccceEeeccccCCCC--CCCCCceEEEeecHHHHHhhhhh-hhhhccchHH
Confidence 46666666 899998887755331 12347789999999999998775 4444433333
No 250
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=36.00 E-value=82 Score=32.88 Aligned_cols=12 Identities=25% Similarity=0.113 Sum_probs=7.0
Q ss_pred CCeEEEEEEccC
Q 009954 362 GDKTLTVRRATA 373 (521)
Q Consensus 362 ~g~~l~v~~~~~ 373 (521)
.|..|.|.....
T Consensus 540 lG~WLAvRiG~d 551 (1027)
T KOG3580|consen 540 LGNWLAVRIGND 551 (1027)
T ss_pred CcceEEEeeccc
Confidence 356666666553
No 251
>PRK11901 hypothetical protein; Reviewed
Probab=33.78 E-value=95 Score=30.00 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=40.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEE--EEEEcChHHHHHHHHHHcC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYG--FCVYQDPAVTDIACAALNG 358 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a--fV~f~~~~~A~~Al~~l~g 358 (521)
.+|-|..+ ..++.|..|..+++ +..+.|+....+|+.+ |. |=.|.+.++|..|+..|-.
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 45555554 45778888888775 4556666655566665 43 3359999999999998853
No 252
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.06 E-value=1.8e+02 Score=20.56 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=30.5
Q ss_pred HHHHHhhcccc-ceeEEEecCCCCCCCCCCCccEEEEEec--CHHHHHHHHHHHhCCee
Q 009954 444 EDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYY--DAVGCATAKNALSGRKF 499 (521)
Q Consensus 444 ~dl~~~f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~--~~~~A~~Ai~~lng~~~ 499 (521)
..|.++|..+| .|.++....... .+.+..+|.+. +.+++..+|+. +|+.+
T Consensus 16 ~~i~~~l~~~~inI~~i~~~~~~~-----~~~~~v~i~v~~~~~~~~~~~L~~-~G~~v 68 (72)
T cd04883 16 ADIAAIFKDRGVNIVSVLVYPSKE-----EDNKILVFRVQTMNPRPIIEDLRR-AGYEV 68 (72)
T ss_pred HHHHHHHHHcCCCEEEEEEeccCC-----CCeEEEEEEEecCCHHHHHHHHHH-CCCee
Confidence 37788888887 588776654321 22355677775 55566666664 45543
No 253
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=33.05 E-value=53 Score=23.69 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=41.1
Q ss_pred HHHHHhhcccc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcC
Q 009954 444 EDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 510 (521)
Q Consensus 444 ~dl~~~f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~ 510 (521)
++|.+.|...| +|..|.-+....+..+ .-..||+.+...+...+ ++=..|+|..|+|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~p---l~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKP---LNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCC---ceEEEEeeccCccccce---eehHhhCCeEEEEecCC
Confidence 36667777777 4777777776544443 46779999887764443 44456899999887643
No 254
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=31.98 E-value=40 Score=27.39 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=37.2
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecC-----HHHHHHHHHHHhCCe--eCCcEEEEEEcCCCCcc
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYD-----AVGCATAKNALSGRK--FGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~-----~~~A~~Ai~~lng~~--~~gr~l~v~~~~~~~~~ 515 (521)
..+.|..|.+-.|-. ...+||.+-. .+++..|++...|+. +-|+.+++.++|+--|.
T Consensus 32 ~~~~Vt~V~vS~Dl~-------~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~lr~~PeL~F~ 95 (118)
T COG0858 32 GLVTVTDVEVSKDLS-------HAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLRLRKTPELHFV 95 (118)
T ss_pred CceEEEEEEEcCCCc-------eEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCCeEeCCeEEEE
Confidence 455699999988752 2456777533 334455666656654 67788888888876664
No 255
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=31.31 E-value=1.6e+02 Score=21.63 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=32.9
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 496 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng 496 (521)
.+|.+.+..+| +..+.+.-.. |=+++|+-+.+.+.|..+++.|.-
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG-------~G~~v~~l~~~~~~~~~v~~~l~~ 81 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG-------GGPTVFALCKDEDDAERVAEALRE 81 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS-------SSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC-------CCCeEEEEECCHHHHHHHHHHHHH
Confidence 46777778888 6666664431 116889999999999999888753
No 256
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=31.16 E-value=32 Score=29.14 Aligned_cols=62 Identities=5% Similarity=0.021 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCC
Q 009954 438 EYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 438 ~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~ 511 (521)
.+..+.+.|..+....|.+.-..+-. ++..++|.+.+++.+++. .....++|..|.+.-.++
T Consensus 30 ~~~~l~~~l~~~W~~~~~~~i~~l~~-----------~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 30 SLSALEQELAKIWKLKGGVKIRDLGD-----------NLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSP 91 (153)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEEeCC-----------CeEEEEEEeccceeEEEe-cccccccccchhhhhhcc
Confidence 35567788888888877666555422 677999999999999988 366778888888877664
No 257
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.49 E-value=9.4 Score=37.74 Aligned_cols=78 Identities=6% Similarity=-0.230 Sum_probs=59.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.+.++..||..+++.++.-+|..||.|.-+.+.+.-..|...-.+||.-.+ .+|..+++.+....+.|..++|..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 356788999999999999999999999988877765556666678887654 346677777766667777777776643
No 258
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.16 E-value=1.4e+02 Score=29.50 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=42.9
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHc
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMAL 241 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l 241 (521)
..-|-|.++|.....+||...|..|+.. +| .|.-+ ....||..|.+...|..||.|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-gf-------dIkWv----DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-GF-------DIKWV----DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-Cc-------eeEEe----ecceeEEeecchHHHHHHhhc
Confidence 3457899999999889999999999762 11 12222 345799999999999999966
No 259
>PRK13817 ribosome-binding factor A; Provisional
Probab=29.11 E-value=70 Score=26.04 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=32.1
Q ss_pred ccceeEEEecCCCCCCCCCCCccEEEEEecC---HHHHHHHHHHHhCCe--eCCcEEEEEEcCCCCcc
Q 009954 453 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYD---AVGCATAKNALSGRK--FGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 453 fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~---~~~A~~Ai~~lng~~--~~gr~l~v~~~~~~~~~ 515 (521)
+-.|..|.+.+|.. ...+||.+-. .+.+..||+...|+. .=++.|.+.++|+-.|.
T Consensus 31 ~vtVt~V~vS~Dl~-------~AkVyvs~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lR~~PeL~F~ 91 (119)
T PRK13817 31 KISLTAVSISPDLK-------QAKVFYSLLENQNEKEVQKALNKATGYLRHLLAQATVLRYVPKLEFV 91 (119)
T ss_pred ceEEeEEEECCCCC-------EEEEEEEECCCccHHHHHHHHHHhHHHHHHHHHHhCCCeECCEEEEE
Confidence 56788899988752 2445665543 334444455444443 34556677777766553
No 260
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=29.10 E-value=3.2e+02 Score=22.37 Aligned_cols=77 Identities=18% Similarity=0.088 Sum_probs=52.7
Q ss_pred CcCCcccCCChHHHHHHHHHHHHhhccccc-eeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEE
Q 009954 426 EAITADALADDEEYEEILEDMREECGKYGT-LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTV 504 (521)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~-I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l 504 (521)
...+++++..++..+.|..-+.++|..+|. ..+..+...... .+.|+.=|.=...+.+..|+-.+. .++|+.|
T Consensus 22 ~vise~~i~~~~l~~~I~~s~l~llG~~gta~~~~~lv~~~~~----t~~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv 95 (124)
T COG1369 22 EVISEEEITRGELVRLIRRSLLSLLGDVGTAKANPRLVKYYFS----TGTGIVRCRREYVDLVRAALMLAR--EVNGKRV 95 (124)
T ss_pred EEeccccCChhHHHHHHHHHHHHHcCcccccccceeEEEEecc----CCceEEEEechhHHHHHHHHHHHH--HhCCceE
Confidence 334446777777888888999999999885 333333332211 235877777778888999988877 6788777
Q ss_pred EEEE
Q 009954 505 NAFY 508 (521)
Q Consensus 505 ~v~~ 508 (521)
.+.-
T Consensus 96 ~I~~ 99 (124)
T COG1369 96 IIVV 99 (124)
T ss_pred EEEE
Confidence 7653
No 261
>PRK12678 transcription termination factor Rho; Provisional
Probab=29.09 E-value=96 Score=32.92 Aligned_cols=10 Identities=20% Similarity=-0.017 Sum_probs=4.8
Q ss_pred CCeEEEEEEc
Q 009954 362 GDKTLTVRRA 371 (521)
Q Consensus 362 ~g~~l~v~~~ 371 (521)
.|+.|.|-+.
T Consensus 501 ~G~dVlillD 510 (672)
T PRK12678 501 LGKDVVVLLD 510 (672)
T ss_pred cCCCEEEEEe
Confidence 4555555443
No 262
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=29.07 E-value=1e+02 Score=32.22 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=21.1
Q ss_pred CCCcceEEEEEEcChHHH------------HHHHHHHcCCeeCCeEEEEEEcc
Q 009954 332 TGNSKGYGFCVYQDPAVT------------DIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 332 ~g~~~g~afV~f~~~~~A------------~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
.|..+..++|.+.++... -+|+..||-.++ .+|.|.|..
T Consensus 666 ag~~~stg~irL~TvrqiieqDKHALLDVTP~AvdrLNY~Qw--ypIVvff~P 716 (1027)
T KOG3580|consen 666 AGSEKSTGVIRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQW--YPIVVFFNP 716 (1027)
T ss_pred CCcccccceEEehhhHHHHhcccchhhccCHHHHhhhcccee--eeEEEEeCC
Confidence 344555677887775432 245566654333 245555543
No 263
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=28.97 E-value=28 Score=25.07 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 445 DMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 445 dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
+|.+.|..+....++.-. .+|..|++.++|..++..++
T Consensus 28 ~v~~~~~~~~~f~k~vkL-------------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 28 EVQKSFSDPEKFSKIVKL-------------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHcCHHHHhhhhhh-------------hhccCCCCHHHHHHHHHHhh
Confidence 677777766555433221 34999999999998888764
No 264
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.71 E-value=1.8e+02 Score=24.39 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHH
Q 009954 301 GLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (521)
Q Consensus 301 nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l 356 (521)
.|+..+.++-|.++++-+|.|.... -.| -.+.|.+.+...+||+.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 5788999999999999999987665 333 466799999999999876
No 265
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=28.57 E-value=22 Score=39.57 Aligned_cols=8 Identities=63% Similarity=1.045 Sum_probs=4.4
Q ss_pred ccCceecC
Q 009954 241 LDGIIFEG 248 (521)
Q Consensus 241 l~g~~~~g 248 (521)
+.|..+.|
T Consensus 350 l~~i~v~g 357 (997)
T KOG0334|consen 350 LDGIKVKG 357 (997)
T ss_pred ccceeecc
Confidence 55555555
No 266
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.27 E-value=1.8e+02 Score=19.86 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=30.1
Q ss_pred HHHHHhhcccc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCC
Q 009954 444 EDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR 497 (521)
Q Consensus 444 ~dl~~~f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~ 497 (521)
.+|...+..+| +|..+....... .+.....+..++.+.+..+++. +|+
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~-----~~~~~v~~~ve~~~~~~~~L~~-~G~ 62 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKK-----GGKALLIFRTEDIEKAIEVLQE-RGV 62 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCC-----CCeEEEEEEeCCHHHHHHHHHH-CCc
Confidence 36777777776 577776544321 1235667777787777777765 454
No 267
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=27.84 E-value=89 Score=28.28 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=2.6
Q ss_pred eEEEEec
Q 009954 213 VVNVYIN 219 (521)
Q Consensus 213 v~~~~~~ 219 (521)
|+|..++
T Consensus 175 VvDpETG 181 (225)
T PF10500_consen 175 VVDPETG 181 (225)
T ss_pred eecCCCC
Confidence 3333333
No 268
>PF14893 PNMA: PNMA
Probab=27.42 E-value=50 Score=32.29 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=43.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh----cCCeeEE-EEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLES----FGTLHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~----~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (521)
+.-+.|.|.+||.++++++|.+.+.. .|...-+ ++... +.+ .-.|+|+|...-+-...=..+ .-.|-..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~-~~~--~~aalve~~e~~n~~~iP~~i---~g~gg~W 89 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRR-EEN--AKAALVEFAEDVNYSLIPREI---PGKGGPW 89 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhh-hcc--cceeeeecccccchhhCchhc---CCCCCce
Confidence 33457999999999999998887773 4443211 11111 122 336899997654422222222 2246677
Q ss_pred EEEEccC
Q 009954 367 TVRRATA 373 (521)
Q Consensus 367 ~v~~~~~ 373 (521)
+|-+-.+
T Consensus 90 ~Vv~~p~ 96 (331)
T PF14893_consen 90 RVVFKPP 96 (331)
T ss_pred EEEecCC
Confidence 7776543
No 269
>PRK12678 transcription termination factor Rho; Provisional
Probab=26.78 E-value=1.2e+02 Score=32.17 Aligned_cols=12 Identities=0% Similarity=-0.235 Sum_probs=5.1
Q ss_pred cHHHHHHHHHHH
Q 009954 187 NEQAIATFFSQV 198 (521)
Q Consensus 187 t~~~l~~~f~~~ 198 (521)
+..+|+.|.-.-
T Consensus 324 s~~qirr~~Lr~ 335 (672)
T PRK12678 324 SMNQVRKNGLRK 335 (672)
T ss_pred CHHHHHHcCCCC
Confidence 334454443333
No 270
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=26.55 E-value=1.9e+02 Score=27.52 Aligned_cols=66 Identities=11% Similarity=0.259 Sum_probs=44.9
Q ss_pred HHHHhhccccceeEEEecCCCCC--C--CCCCCccEEEEEecCHHHHHH----HHHHHhCC--eeCCcEEEEEEcC
Q 009954 445 DMREECGKYGTLVNVVIPRPDQN--G--GETPGVGKVFLEYYDAVGCAT----AKNALSGR--KFGGNTVNAFYYP 510 (521)
Q Consensus 445 dl~~~f~~fG~I~~v~i~~~~~~--~--~~~~g~g~afV~F~~~~~A~~----Ai~~lng~--~~~gr~l~v~~~~ 510 (521)
.+...|..||+|+.|.++.+... . ..-.......+.|-+.+.|.. .++.|+-+ .+.-..|+++|+.
T Consensus 31 ~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 31 SFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEE
Confidence 56777899999999999987610 0 000112467999999887754 33444433 3788899999976
No 271
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=25.26 E-value=1.9e+02 Score=24.64 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=32.9
Q ss_pred HHHHHHHhhcccc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCC
Q 009954 442 ILEDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR 497 (521)
Q Consensus 442 ~~~dl~~~f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~ 497 (521)
+.+.|.+.....+ .|.+|.++..- .||.||+....+++..++..+.|.
T Consensus 21 V~~~L~~~~~~~~~~i~~i~vp~~f--------pGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 21 VALMLAMRAKKENLPIYAILAPPEL--------KGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred HHHHHHHHHHhCCCcEEEEEccCCC--------CcEEEEEEEChHHHHHHHhcCCCE
Confidence 3345555554222 27777776643 389999999889999999887653
No 272
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=25.11 E-value=3.2e+02 Score=20.93 Aligned_cols=49 Identities=20% Similarity=0.122 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcccc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhC
Q 009954 441 EILEDMREECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 496 (521)
Q Consensus 441 ~~~~dl~~~f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng 496 (521)
+..+.++++++.+| +|+++....-..+ .++.+++.+.+.|.++...+..
T Consensus 20 ~R~~a~~~~~e~~Gg~l~~~y~t~G~yD-------~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 20 DRAEAVRALIEALGGKLKSFYWTLGEYD-------FVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEecCCCC-------EEEEEEcCCHHHHHHHHHHHHc
Confidence 34467888888877 6888888764432 5678999999888877765544
No 273
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=24.80 E-value=73 Score=31.35 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=45.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCC--CCCcceEEEEEEcChHHHHHHHHHHcCCee
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRD--TGNSKGYGFCVYQDPAVTDIACAALNGLKM 361 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~--~g~~~g~afV~f~~~~~A~~Al~~l~g~~~ 361 (521)
...|.|..||+..++++|.+...+|-. +....+..... -..--+.|||.|...++...-...++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 357999999999999999888887544 33333332111 111235699999999997666666666544
No 274
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=24.67 E-value=91 Score=28.12 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=41.6
Q ss_pred HHHHhhccccc---eeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeC-------CcEEEEEEcCCCCc
Q 009954 445 DMREECGKYGT---LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-------GNTVNAFYYPEDKY 514 (521)
Q Consensus 445 dl~~~f~~fG~---I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~-------gr~l~v~~~~~~~~ 514 (521)
++.+....+|. |++..+..- . +|++-+..--.++++|..+.+.|=|..|. |.++.--++.+...
T Consensus 29 ea~~~~~~l~~~~~VvKaQvl~G----g--RGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~ 102 (202)
T PF08442_consen 29 EAREAAKELGGKPLVVKAQVLAG----G--RGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGEKVNKVLVEEFVD 102 (202)
T ss_dssp HHHHHHHHHTTSSEEEEE-SSSS----T--TTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEEEE--EEEEE---
T ss_pred HHHHHHHHhCCCcEEEEEeEeec----C--cccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCCEeeEEEEEecCc
Confidence 55555554443 666666542 1 33332233345799999999999999998 88888888887777
Q ss_pred ccccC
Q 009954 515 FNKDY 519 (521)
Q Consensus 515 ~~~~~ 519 (521)
+..+|
T Consensus 103 ~~~E~ 107 (202)
T PF08442_consen 103 IKREY 107 (202)
T ss_dssp CCEEE
T ss_pred cCceE
Confidence 77665
No 275
>TIGR00082 rbfA ribosome-binding factor A. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'terminal helix region of 16S rRNA. Mutants lacking rbfA have a cold-sensitive phenotype.
Probab=24.59 E-value=54 Score=26.45 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=33.5
Q ss_pred ccceeEEEecCCCCCCCCCCCccEEEEEec-CHHHHHHHHHHHh---CCe--eCCcEEEEEEcCCCCcc
Q 009954 453 YGTLVNVVIPRPDQNGGETPGVGKVFLEYY-DAVGCATAKNALS---GRK--FGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 453 fG~I~~v~i~~~~~~~~~~~g~g~afV~F~-~~~~A~~Ai~~ln---g~~--~~gr~l~v~~~~~~~~~ 515 (521)
+-+|..|.+.+|.. ...+||.+- +.++...+++.|+ |+. .=|+.|.+.++|+-.|.
T Consensus 32 ~vtVt~V~lS~Dl~-------~AkVyvs~~~~~~~~~~~l~~L~~~~g~iR~~l~k~l~lR~~P~L~F~ 93 (114)
T TIGR00082 32 MLTVTKVEVSKDLQ-------HAKVFVDCYGDEEAIDRVVKALNKAKGFIRSLLGQAMRLRKTPELHFV 93 (114)
T ss_pred eEEEeEEEECCCCC-------EEEEEEEECCChhhHHHHHHHHHHHHHHHHHHHHhhCCceECCEEEEE
Confidence 45788889888752 245677765 3333344444444 432 44566777777776653
No 276
>PRK13815 ribosome-binding factor A; Provisional
Probab=23.42 E-value=90 Score=25.56 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=33.6
Q ss_pred ccceeEEEecCCCCCCCCCCCccEEEEEecC-H---HHHHHHHHHHhCCe--eCCcEEEEEEcCCCCcc
Q 009954 453 YGTLVNVVIPRPDQNGGETPGVGKVFLEYYD-A---VGCATAKNALSGRK--FGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 453 fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~-~---~~A~~Ai~~lng~~--~~gr~l~v~~~~~~~~~ 515 (521)
+-+|..|.+..|.. ...+||.+-. . +++..||+...|+. .=|+.|.+.++|+-.|.
T Consensus 31 ~vtVt~V~vS~Dl~-------~AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lR~~PeL~F~ 92 (122)
T PRK13815 31 FVTITGVKVTDDLH-------LATIYFTVIGDDEAKKSTEAGLNSARGFIRKELGKVLRMRYAPELIFK 92 (122)
T ss_pred ceEEeEEEECCCCC-------EEEEEEEECCCchhHHHHHHHHHHHHHHHHHHHHHhCCCeECCEEEEE
Confidence 45788888888752 2455776642 2 23445555555543 44566777777776654
No 277
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=23.39 E-value=95 Score=34.15 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=35.0
Q ss_pred ccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 474 VGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 474 ~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
.+.|||+|++.-.|+.|.+.........-.+.....++|.+
T Consensus 305 ~~~aFVtf~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~ 345 (728)
T KOG1134|consen 305 LPAAFVTFKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIY 345 (728)
T ss_pred CceEEEEEEeeHHHHHHHHhhhcCCCCceEEEecCCcccce
Confidence 47899999999999999998888888887777777777765
No 278
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.09 E-value=1.5e+02 Score=32.21 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCccccCCCCcCCCcCCCCCCCCccccchhhhccCCeEEEeCCCc
Q 009954 115 DMAPPAAAMLPGAAVPGQLPGVPSAVPEMAQNMLPFGATQLGAFPLMPVQVMTQQATRHARRVYVGGLPP 184 (521)
Q Consensus 115 d~~~~~~~~~~~~~~~g~~p~~~p~~p~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~v~nlp~ 184 (521)
..++|.-...+|..-.+.+|++|||+|+.....-+.+.......|.+|++.. -|.||-|+
T Consensus 538 G~g~pppPppPPlpggag~PPPPpplPg~aG~PPpPppppg~~gppPPPpp~----------g~~Gg~pp 597 (1102)
T KOG1924|consen 538 GTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPPPPPPPG----------GFLGGPPP 597 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCCCcCCCC----------CCCCCCCC
No 279
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.84 E-value=24 Score=35.03 Aligned_cols=65 Identities=5% Similarity=-0.155 Sum_probs=51.8
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
+++.-+|+.||.|..+.+.+.... +-|.-++||.-.+ ++|..+|+.+.-..+.|.+++++.+++.
T Consensus 18 ~~~~~~~~d~~~i~~~d~~~~~~~---~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 18 DQNSMKHEDPSIISMEDGSPYVNG---SLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred chhhhhccCCcceeeccCCccccC---Ccceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 588999999999999988775533 2345668888766 7889999999999999999999887653
No 280
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=22.24 E-value=71 Score=29.13 Aligned_cols=30 Identities=23% Similarity=0.524 Sum_probs=26.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGF 324 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v 324 (521)
.+||+-|+|..++++.|..+.+++|.+..+
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 589999999999999999999999865444
No 281
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.96 E-value=4e+02 Score=22.56 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=38.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHH
Q 009954 296 RVFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 355 (521)
+-|+--++...+..+|++.++. |+. |..|....-+ .|. --|||.+....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~--KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGL--KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCc--eEEEEEECCCCcHHHHHHh
Confidence 3445556778999999999996 554 6666555443 232 2599999888776654443
No 282
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.62 E-value=3.1e+02 Score=20.79 Aligned_cols=44 Identities=11% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHhhcc-cc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHH
Q 009954 445 DMREECGK-YG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL 494 (521)
Q Consensus 445 dl~~~f~~-fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~l 494 (521)
+|++.++. || .|.+|...... .|.-.|||.+..-.+|......|
T Consensus 36 eIK~AvE~lf~VkV~~VnT~~~~------~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 36 DIKRAVEELFDVKVEKVNTLITP------KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred HHHHHHHHHhCCceEEEEeEEcC------CCcEEEEEEeCCCCcHHHHHHhh
Confidence 44444443 33 68888776654 23356999999999998876654
No 283
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=20.07 E-value=1.8e+02 Score=21.26 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=27.0
Q ss_pred cEEEEEecCHHHHHHHHHHHh------------CCeeCCcEEEEEEcCCC
Q 009954 475 GKVFLEYYDAVGCATAKNALS------------GRKFGGNTVNAFYYPED 512 (521)
Q Consensus 475 g~afV~F~~~~~A~~Ai~~ln------------g~~~~gr~l~v~~~~~~ 512 (521)
..+-|.|.+++.|+.|+..|. .....|..|.|.|..++
T Consensus 3 ~~l~i~f~s~~~A~ii~~sL~~d~e~~~~~~~~~~~~~~~~L~i~~~A~d 52 (76)
T PF09341_consen 3 FTLEIPFESEEKAEIIYRSLKPDKELKPSRVKRELSVDGNKLVITIEAED 52 (76)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHH-SS-SSEEEEEEESSEEEEEEEESS
T ss_pred EEEEEEeCCHHHHHHHHHHhCCCCCCCCCcEEEEEEEeCCEEEEEEEECC
Confidence 456899999999999998875 22356777777775443
Done!