Query 009954
Match_columns 521
No_of_seqs 339 out of 3323
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 16:39:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.4E-41 8.1E-46 325.9 29.1 248 170-514 18-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 9.1E-41 3.1E-45 323.2 25.0 248 170-512 37-291 (292)
3 2g4b_A Splicing factor U2AF 65 100.0 5.9E-32 2E-36 240.0 23.2 170 173-372 3-172 (172)
4 2yh0_A Splicing factor U2AF 65 100.0 1.3E-31 4.6E-36 243.4 26.1 194 173-376 3-196 (198)
5 4f02_A Polyadenylate-binding p 100.0 7.6E-32 2.6E-36 247.5 14.2 167 172-373 13-180 (213)
6 3md3_A Nuclear and cytoplasmic 100.0 9.6E-31 3.3E-35 230.6 18.5 159 175-372 1-165 (166)
7 4f02_A Polyadenylate-binding p 100.0 1.1E-30 3.9E-35 239.6 19.6 169 292-512 13-181 (213)
8 1fje_B Nucleolin RBD12, protei 100.0 2.9E-30 9.8E-35 229.7 20.0 165 171-374 10-174 (175)
9 1b7f_A Protein (SXL-lethal pro 100.0 1.1E-30 3.6E-35 230.9 16.1 164 173-371 2-168 (168)
10 1l3k_A Heterogeneous nuclear r 100.0 5.4E-31 1.8E-35 239.0 14.2 176 171-376 10-185 (196)
11 2qfj_A FBP-interacting repress 100.0 3.6E-31 1.2E-35 244.1 11.0 184 168-375 22-206 (216)
12 1fxl_A Paraneoplastic encephal 100.0 9.7E-30 3.3E-34 224.4 19.2 157 174-371 2-167 (167)
13 1b7f_A Protein (SXL-lethal pro 100.0 7.7E-30 2.6E-34 225.3 17.9 164 294-509 3-168 (168)
14 1fxl_A Paraneoplastic encephal 100.0 1.5E-29 5.1E-34 223.2 19.2 164 294-509 2-167 (167)
15 3md3_A Nuclear and cytoplasmic 100.0 2.8E-29 9.4E-34 221.3 20.5 166 295-511 1-166 (166)
16 2qfj_A FBP-interacting repress 100.0 3.5E-29 1.2E-33 230.8 20.3 179 294-513 28-206 (216)
17 2cjk_A Nuclear polyadenylated 100.0 7.3E-31 2.5E-35 231.7 6.8 165 173-374 2-166 (167)
18 1l3k_A Heterogeneous nuclear r 100.0 5.8E-29 2E-33 225.6 16.9 175 292-514 11-185 (196)
19 3nmr_A Cugbp ELAV-like family 100.0 6.5E-29 2.2E-33 220.9 16.0 165 173-372 2-175 (175)
20 3tyt_A Heterogeneous nuclear r 100.0 1.7E-28 5.8E-33 222.5 17.7 184 174-371 4-204 (205)
21 2cjk_A Nuclear polyadenylated 100.0 7.3E-29 2.5E-33 218.8 12.5 163 295-512 4-166 (167)
22 2adc_A Polypyrimidine tract-bi 100.0 2.1E-27 7.2E-32 220.4 21.0 185 172-373 32-227 (229)
23 3sde_A Paraspeckle component 1 100.0 6.5E-28 2.2E-32 228.4 17.9 155 171-373 19-178 (261)
24 3nmr_A Cugbp ELAV-like family 100.0 8.5E-28 2.9E-32 213.7 17.2 164 295-510 4-175 (175)
25 3pgw_A U1-A; protein-RNA compl 100.0 3.2E-27 1.1E-31 226.8 22.2 187 171-372 6-281 (282)
26 2ghp_A U4/U6 snRNA-associated 99.9 2.1E-27 7.1E-32 229.4 16.8 172 173-374 116-291 (292)
27 3smz_A Protein raver-1, ribonu 99.9 1.4E-27 4.7E-32 229.6 14.5 172 172-376 93-266 (284)
28 2g4b_A Splicing factor U2AF 65 99.9 4.2E-27 1.4E-31 208.6 16.2 158 294-510 4-172 (172)
29 1qm9_A Polypyrimidine tract-bi 99.9 2.8E-27 9.5E-32 214.8 15.2 182 174-373 3-196 (198)
30 3pgw_A U1-A; protein-RNA compl 99.9 2.4E-26 8.1E-31 220.7 22.3 198 292-510 7-281 (282)
31 1fje_B Nucleolin RBD12, protei 99.9 4.3E-27 1.5E-31 209.1 14.4 164 292-512 11-174 (175)
32 2yh0_A Splicing factor U2AF 65 99.9 3.8E-26 1.3E-30 207.4 19.8 181 294-513 4-195 (198)
33 3tyt_A Heterogeneous nuclear r 99.9 4.6E-26 1.6E-30 206.5 18.0 181 294-502 4-193 (205)
34 2adc_A Polypyrimidine tract-bi 99.9 6E-26 2E-30 210.6 17.1 193 292-512 32-228 (229)
35 1qm9_A Polypyrimidine tract-bi 99.9 1.3E-25 4.4E-30 203.8 14.6 186 295-512 4-197 (198)
36 3sde_A Paraspeckle component 1 99.9 4.4E-25 1.5E-29 208.9 17.0 157 292-513 20-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 7E-22 2.4E-26 172.0 14.2 142 218-375 9-151 (158)
38 3v4m_A Splicing factor U2AF 65 99.9 4.7E-22 1.6E-26 158.9 11.0 102 417-519 3-104 (105)
39 4fxv_A ELAV-like protein 1; RN 99.8 1.8E-20 6E-25 148.5 12.4 80 294-373 19-98 (99)
40 2i2y_A Fusion protein consists 99.8 1.8E-20 6.3E-25 161.3 12.4 136 220-374 11-148 (150)
41 3ue2_A Poly(U)-binding-splicin 99.8 3.8E-20 1.3E-24 150.5 7.3 100 417-521 18-118 (118)
42 3s8s_A Histone-lysine N-methyl 99.8 3.7E-19 1.3E-23 143.7 12.7 82 292-373 4-85 (110)
43 2lxi_A RNA-binding protein 10; 99.8 6E-20 2E-24 143.2 6.6 82 295-376 2-85 (91)
44 3s6e_A RNA-binding protein 39; 99.8 1.8E-19 6.3E-24 145.3 9.1 94 416-516 4-97 (114)
45 2lkz_A RNA-binding protein 5; 99.8 2.7E-19 9.4E-24 139.9 8.8 81 293-373 8-94 (95)
46 4f25_A Polyadenylate-binding p 99.8 9.6E-19 3.3E-23 143.0 11.9 80 294-375 5-84 (115)
47 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.4E-18 4.7E-23 134.7 11.7 81 293-373 5-85 (87)
48 3md1_A Nuclear and cytoplasmic 99.8 1.8E-18 6.2E-23 132.7 12.1 80 295-374 2-81 (83)
49 2dnz_A Probable RNA-binding pr 99.8 2.8E-18 9.4E-23 135.4 11.7 84 292-375 3-86 (95)
50 2cqc_A Arginine/serine-rich sp 99.8 3.3E-18 1.1E-22 134.9 12.1 83 291-373 12-94 (95)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.3E-18 7.9E-23 132.8 10.9 81 292-372 5-85 (85)
52 2x1f_A MRNA 3'-END-processing 99.8 3.8E-18 1.3E-22 134.7 12.3 84 294-377 2-85 (96)
53 2cq0_A Eukaryotic translation 99.8 2.7E-18 9.1E-23 137.6 11.4 86 291-376 12-97 (103)
54 2e5h_A Zinc finger CCHC-type a 99.8 2.5E-18 8.5E-23 135.3 11.1 82 291-372 13-94 (94)
55 1x5s_A Cold-inducible RNA-bind 99.8 2.6E-18 8.9E-23 137.5 11.1 86 290-375 8-93 (102)
56 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2E-18 6.9E-23 138.1 10.4 86 291-376 9-94 (102)
57 2dgo_A Cytotoxic granule-assoc 99.8 7.2E-18 2.4E-22 138.1 13.9 85 292-376 13-97 (115)
58 3p5t_L Cleavage and polyadenyl 99.8 5.2E-19 1.8E-23 137.8 6.7 81 295-375 2-84 (90)
59 1whw_A Hypothetical protein ri 99.8 3.8E-18 1.3E-22 135.7 11.5 84 292-375 6-89 (99)
60 2cpz_A CUG triplet repeat RNA- 99.8 6E-18 2.1E-22 138.5 12.7 85 292-376 23-107 (115)
61 2dnm_A SRP46 splicing factor; 99.8 3E-18 1E-22 137.4 10.6 83 292-374 11-93 (103)
62 2div_A TRNA selenocysteine ass 99.8 3E-18 1E-22 136.2 10.6 84 291-374 6-94 (99)
63 2kn4_A Immunoglobulin G-bindin 99.8 4.6E-18 1.6E-22 147.8 12.5 150 323-513 2-151 (158)
64 2lea_A Serine/arginine-rich sp 99.8 5.8E-19 2E-23 148.4 6.3 122 224-375 6-128 (135)
65 2dgs_A DAZ-associated protein 99.8 5.5E-18 1.9E-22 134.7 11.6 84 292-376 8-91 (99)
66 1x5t_A Splicing factor 3B subu 99.8 3.4E-18 1.2E-22 135.2 10.0 83 293-375 4-87 (96)
67 1x5u_A Splicing factor 3B subu 99.8 5.3E-18 1.8E-22 136.4 11.3 85 291-375 12-96 (105)
68 2do4_A Squamous cell carcinoma 99.8 1.4E-17 4.7E-22 132.7 13.3 83 292-375 15-97 (100)
69 1p27_B RNA-binding protein 8A; 99.7 6E-18 2.1E-22 136.4 11.3 83 293-375 22-104 (106)
70 2cpf_A RNA binding motif prote 99.7 5.4E-18 1.8E-22 134.5 10.7 84 292-375 3-89 (98)
71 2dgp_A Bruno-like 4, RNA bindi 99.7 5.4E-18 1.8E-22 136.7 10.9 85 291-375 10-97 (106)
72 2ywk_A Putative RNA-binding pr 99.7 7E-18 2.4E-22 133.0 11.3 80 292-372 14-93 (95)
73 2la6_A RNA-binding protein FUS 99.7 8.4E-18 2.9E-22 133.6 11.6 81 292-372 11-99 (99)
74 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.5E-18 2.6E-22 147.3 12.4 141 227-376 11-154 (165)
75 2jrs_A RNA-binding protein 39; 99.7 6.8E-18 2.3E-22 136.1 11.2 84 291-374 23-106 (108)
76 2dgx_A KIAA0430 protein; RRM d 99.7 8.7E-18 3E-22 132.6 11.5 82 292-376 7-92 (96)
77 1x4h_A RNA-binding protein 28; 99.7 1.2E-17 4.2E-22 135.8 12.4 86 291-376 12-103 (111)
78 3ns6_A Eukaryotic translation 99.7 1.3E-18 4.4E-23 138.4 6.3 80 294-373 6-92 (100)
79 3ulh_A THO complex subunit 4; 99.7 1.7E-17 5.7E-22 134.0 12.3 81 291-372 26-106 (107)
80 2dng_A Eukaryotic translation 99.7 1.5E-17 5.1E-22 133.2 11.8 83 291-375 12-94 (103)
81 1oo0_B CG8781-PA, drosophila Y 99.7 1.2E-17 4E-22 135.6 11.3 83 293-375 25-107 (110)
82 2dnh_A Bruno-like 5, RNA bindi 99.7 2.1E-17 7.3E-22 132.9 12.6 84 292-376 13-99 (105)
83 2cph_A RNA binding motif prote 99.7 1.5E-17 5.2E-22 134.3 11.7 84 292-375 13-98 (107)
84 2dh8_A DAZ-associated protein 99.7 1.2E-17 4E-22 134.4 10.8 85 291-376 13-97 (105)
85 2d9p_A Polyadenylate-binding p 99.7 1.6E-17 5.3E-22 133.1 11.3 83 292-376 13-95 (103)
86 2dgv_A HnRNP M, heterogeneous 99.7 1.9E-17 6.6E-22 129.6 11.4 82 292-375 6-87 (92)
87 3s7r_A Heterogeneous nuclear r 99.7 2.5E-17 8.4E-22 127.5 11.9 79 292-371 9-87 (87)
88 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.5E-17 1.5E-21 130.4 13.8 83 291-375 12-94 (103)
89 2pe8_A Splicing factor 45; RRM 99.7 5.7E-18 1.9E-22 135.0 8.4 98 416-520 5-102 (105)
90 3ucg_A Polyadenylate-binding p 99.7 1.8E-17 6.2E-22 128.9 11.1 78 295-373 7-84 (89)
91 3n9u_C Cleavage and polyadenyl 99.7 1.4E-17 4.9E-22 143.2 11.4 81 293-373 54-136 (156)
92 2kxn_B Transformer-2 protein h 99.7 8.4E-18 2.9E-22 140.0 9.7 84 291-374 43-126 (129)
93 2khc_A Testis-specific RNP-typ 99.7 1.8E-17 6.1E-22 136.4 11.5 82 291-372 37-118 (118)
94 2fy1_A RNA-binding motif prote 99.7 1.4E-17 4.8E-22 136.1 10.7 82 292-374 5-86 (116)
95 4a8x_A RNA-binding protein wit 99.7 1.4E-17 4.9E-22 129.2 10.3 80 294-373 4-84 (88)
96 2cpe_A RNA-binding protein EWS 99.7 1.9E-17 6.5E-22 135.1 11.3 84 292-375 13-104 (113)
97 2ek1_A RNA-binding protein 12; 99.7 5.2E-18 1.8E-22 133.8 7.6 81 292-372 13-93 (95)
98 2cq3_A RNA-binding protein 9; 99.7 5.2E-17 1.8E-21 130.0 13.6 84 291-376 12-95 (103)
99 1sjq_A Polypyrimidine tract-bi 99.7 1.4E-17 4.8E-22 131.3 9.9 78 292-375 14-93 (105)
100 2wbr_A GW182, gawky, LD47780P; 99.7 2.1E-17 7.2E-22 123.7 10.3 72 295-372 8-79 (89)
101 2cqd_A RNA-binding region cont 99.7 2.3E-17 8E-22 135.2 11.6 82 292-374 15-96 (116)
102 2cqp_A RNA-binding protein 12; 99.7 9.7E-18 3.3E-22 133.0 8.8 82 292-373 13-94 (98)
103 2do0_A HnRNP M, heterogeneous 99.7 6.2E-17 2.1E-21 132.3 13.8 82 291-373 12-93 (114)
104 2dhg_A TRNA selenocysteine ass 99.7 1.6E-17 5.6E-22 133.3 10.1 83 292-375 7-91 (104)
105 1wi8_A EIF-4B, eukaryotic tran 99.7 1.9E-17 6.6E-22 132.8 10.5 82 292-375 13-95 (104)
106 4f25_A Polyadenylate-binding p 99.7 3.2E-18 1.1E-22 139.9 5.8 104 174-310 5-113 (115)
107 3ex7_B RNA-binding protein 8A; 99.7 1.7E-17 5.7E-22 138.3 9.9 86 293-378 21-106 (126)
108 2dgw_A Probable RNA-binding pr 99.7 5.3E-17 1.8E-21 126.8 12.0 81 292-375 8-88 (91)
109 2kt5_A RNA and export factor-b 99.7 6.3E-17 2.2E-21 134.3 13.1 85 291-376 32-116 (124)
110 2mss_A Protein (musashi1); RNA 99.7 6.9E-18 2.4E-22 126.6 6.5 75 296-371 1-75 (75)
111 1u6f_A Tcubp1, RNA-binding pro 99.7 5.1E-17 1.8E-21 137.8 12.7 85 291-375 39-123 (139)
112 2cqg_A TDP-43, TAR DNA-binding 99.7 1E-16 3.5E-21 128.3 13.6 83 291-375 12-94 (103)
113 1p1t_A Cleavage stimulation fa 99.7 1.4E-17 4.8E-22 133.7 8.5 80 294-373 8-87 (104)
114 3r27_A HnRNP L, heterogeneous 99.7 4.8E-17 1.6E-21 126.9 11.1 77 292-374 19-97 (100)
115 1s79_A Lupus LA protein; RRM, 99.7 1.3E-17 4.5E-22 132.7 8.0 78 294-373 11-88 (103)
116 1h2v_Z 20 kDa nuclear CAP bind 99.7 8.1E-17 2.8E-21 139.4 13.3 84 292-375 37-120 (156)
117 2i2y_A Fusion protein consists 99.7 7.2E-17 2.5E-21 138.8 12.7 138 332-512 9-148 (150)
118 1x4e_A RNA binding motif, sing 99.7 5E-18 1.7E-22 130.8 4.7 81 292-372 3-83 (85)
119 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5E-17 1.7E-21 138.2 11.3 82 290-371 59-140 (140)
120 2cq4_A RNA binding motif prote 99.7 2.9E-17 9.8E-22 134.2 9.1 79 294-373 25-103 (114)
121 3pgw_S U1-70K; protein-RNA com 99.7 5.8E-18 2E-22 170.3 5.9 83 292-374 100-182 (437)
122 2err_A Ataxin-2-binding protei 99.7 5.1E-17 1.7E-21 131.3 10.2 82 291-374 26-107 (109)
123 2cpi_A CCR4-NOT transcription 99.7 4.5E-17 1.6E-21 132.1 9.9 84 292-375 13-102 (111)
124 2rs2_A Musashi-1, RNA-binding 99.7 5.3E-17 1.8E-21 131.1 9.8 83 292-375 23-105 (109)
125 2cq1_A PTB-like protein L; RRM 99.7 1.3E-16 4.3E-21 126.1 11.6 78 292-375 13-92 (101)
126 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-17 5.3E-22 125.5 6.0 76 295-371 1-76 (77)
127 1x4a_A Splicing factor, argini 99.7 1.9E-16 6.5E-21 128.2 12.9 81 292-375 20-100 (109)
128 2ki2_A SS-DNA binding protein 99.7 7.9E-18 2.7E-22 131.2 4.5 79 295-374 2-80 (90)
129 3lqv_A PRE-mRNA branch site pr 99.7 6.5E-17 2.2E-21 132.3 10.2 79 292-373 6-84 (115)
130 2m2b_A RNA-binding protein 10; 99.7 1.7E-17 5.9E-22 139.0 6.7 83 291-374 20-108 (131)
131 1wez_A HnRNP H', FTP-3, hetero 99.7 4.5E-17 1.5E-21 129.6 8.2 80 291-373 12-91 (102)
132 1x4d_A Matrin 3; structural ge 99.7 5.6E-17 1.9E-21 127.9 8.7 76 292-373 13-91 (102)
133 2db1_A Heterogeneous nuclear r 99.7 6.8E-17 2.3E-21 132.5 9.5 80 292-373 15-97 (118)
134 2dis_A Unnamed protein product 99.7 6.4E-17 2.2E-21 131.0 9.3 83 293-375 7-93 (109)
135 2nlw_A Eukaryotic translation 99.7 6.9E-17 2.4E-21 129.6 9.4 78 294-373 15-99 (105)
136 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.8E-17 6.3E-22 131.7 5.7 81 292-374 17-98 (100)
137 1wex_A Hypothetical protein (r 99.7 1.2E-16 4.2E-21 127.0 10.2 78 292-375 13-92 (104)
138 2cpy_A RNA-binding protein 12; 99.7 3.9E-17 1.3E-21 133.2 7.5 81 291-373 12-93 (114)
139 2jwn_A Embryonic polyadenylate 99.7 1E-16 3.5E-21 133.0 10.3 79 294-373 36-114 (124)
140 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.8E-21 129.5 9.9 79 292-376 29-109 (119)
141 1x5o_A RNA binding motif, sing 99.7 1.9E-16 6.4E-21 129.3 11.2 81 292-373 23-111 (114)
142 1x4b_A Heterogeneous nuclear r 99.7 1E-16 3.6E-21 131.3 9.5 81 294-375 27-107 (116)
143 1x4c_A Splicing factor, argini 99.7 3.2E-16 1.1E-20 126.4 12.1 76 292-374 13-93 (108)
144 1wg5_A Heterogeneous nuclear r 99.7 1.1E-16 3.9E-21 128.1 9.1 80 292-373 13-93 (104)
145 2fc9_A NCL protein; structure 99.7 1.9E-16 6.4E-21 126.3 10.1 81 291-375 12-92 (101)
146 2dnq_A RNA-binding protein 4B; 99.7 2.6E-16 8.9E-21 122.5 10.5 77 292-376 6-82 (90)
147 2a3j_A U1 small nuclear ribonu 99.7 2.1E-16 7.2E-21 130.4 10.3 79 292-373 27-109 (127)
148 2hgl_A HNRPF protein, heteroge 99.7 9.4E-17 3.2E-21 134.1 8.2 80 292-373 42-124 (136)
149 1iqt_A AUF1, heterogeneous nuc 99.7 4.1E-17 1.4E-21 122.4 5.4 75 296-371 1-75 (75)
150 2fc8_A NCL protein; structure 99.7 3.3E-16 1.1E-20 125.1 11.0 82 291-375 12-93 (102)
151 2ytc_A PRE-mRNA-splicing facto 99.7 3.2E-16 1.1E-20 120.7 10.4 75 292-372 10-85 (85)
152 2dnn_A RNA-binding protein 12; 99.7 1.3E-16 4.4E-21 128.0 8.2 75 295-372 17-91 (109)
153 1wel_A RNA-binding protein 12; 99.7 4.7E-17 1.6E-21 134.9 5.9 81 292-373 23-103 (124)
154 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-16 6.6E-21 127.2 8.9 77 293-373 27-104 (111)
155 1why_A Hypothetical protein ri 99.7 4E-16 1.4E-20 123.3 10.5 77 292-374 15-93 (97)
156 2krb_A Eukaryotic translation 99.7 6.3E-17 2.2E-21 123.3 5.5 72 295-368 2-80 (81)
157 2dnp_A RNA-binding protein 14; 99.7 6.6E-16 2.2E-20 120.2 11.4 75 292-374 7-81 (90)
158 2cpj_A Non-POU domain-containi 99.7 3.7E-16 1.3E-20 124.0 10.1 77 292-374 13-89 (99)
159 3q2s_C Cleavage and polyadenyl 99.7 1.8E-16 6.1E-21 145.6 9.5 81 293-373 67-149 (229)
160 1fj7_A Nucleolin RBD1, protein 99.7 3.8E-17 1.3E-21 130.4 3.9 81 293-375 16-96 (101)
161 2dgt_A RNA-binding protein 30; 99.7 9E-16 3.1E-20 120.0 11.6 76 292-375 8-83 (92)
162 1x4g_A Nucleolysin TIAR; struc 99.7 6.6E-16 2.3E-20 124.9 11.1 78 292-375 23-100 (109)
163 2hgn_A Heterogeneous nuclear r 99.6 3.8E-17 1.3E-21 136.9 3.6 80 292-374 44-123 (139)
164 1nu4_A U1A RNA binding domain; 99.6 2.2E-16 7.5E-21 124.9 7.8 80 292-374 6-89 (97)
165 2lmi_A GRSF-1, G-rich sequence 99.6 6.7E-17 2.3E-21 130.2 4.9 80 292-373 9-91 (107)
166 2dgu_A Heterogeneous nuclear r 99.6 1.1E-15 3.6E-20 122.3 11.8 77 292-376 9-85 (103)
167 2j8a_A Histone-lysine N-methyl 99.6 3.5E-16 1.2E-20 125.1 8.7 79 295-373 3-95 (136)
168 2xnq_A Nuclear polyadenylated 99.6 1.3E-15 4.3E-20 120.2 11.8 75 292-374 20-95 (97)
169 2f3j_A RNA and export factor b 99.6 6.4E-16 2.2E-20 135.9 11.2 82 291-373 85-166 (177)
170 2hvz_A Splicing factor, argini 99.6 3.2E-16 1.1E-20 124.9 8.4 75 295-374 1-75 (101)
171 2cpx_A Hypothetical protein FL 99.6 9.1E-17 3.1E-21 131.5 5.3 85 292-376 23-107 (115)
172 2la4_A Nuclear and cytoplasmic 99.6 3E-16 1E-20 125.1 8.0 75 293-373 26-100 (101)
173 2jvo_A Nucleolar protein 3; nu 99.6 8E-16 2.7E-20 123.8 10.3 76 291-374 28-103 (108)
174 2e5j_A Methenyltetrahydrofolat 99.6 8.4E-16 2.9E-20 121.4 10.2 78 292-374 17-94 (97)
175 1fjc_A Nucleolin RBD2, protein 99.6 4E-16 1.4E-20 123.1 8.0 78 293-375 15-92 (96)
176 2wbr_A GW182, gawky, LD47780P; 99.6 9.3E-16 3.2E-20 114.8 9.5 71 174-256 7-78 (89)
177 1x4f_A Matrin 3; structural ge 99.6 2.3E-16 7.9E-21 126.2 6.1 77 292-374 23-102 (112)
178 2cqh_A IGF-II mRNA-binding pro 99.6 7.6E-16 2.6E-20 120.7 8.9 77 292-375 6-84 (93)
179 2dha_A FLJ20171 protein; RRM d 99.6 3.3E-16 1.1E-20 128.3 7.0 79 292-372 21-103 (123)
180 2xs2_A Deleted in azoospermia- 99.6 4.4E-16 1.5E-20 124.4 7.4 79 294-375 9-87 (102)
181 1whx_A Hypothetical protein ri 99.6 6.1E-16 2.1E-20 125.2 7.8 75 294-374 10-84 (111)
182 2cpd_A Apobec-1 stimulating pr 99.6 4.4E-15 1.5E-19 117.8 12.6 76 292-375 13-90 (99)
183 2pe8_A Splicing factor 45; RRM 99.6 3.1E-15 1.1E-19 119.1 11.5 81 293-373 7-93 (105)
184 2lcw_A RNA-binding protein FUS 99.4 3.3E-17 1.1E-21 134.3 0.0 81 293-373 6-94 (116)
185 2cq2_A Hypothetical protein LO 99.6 1.2E-15 4.2E-20 121.9 9.1 77 292-374 23-106 (114)
186 2e44_A Insulin-like growth fac 99.6 2E-15 6.9E-20 119.0 10.1 78 293-374 14-92 (96)
187 1wf1_A RNA-binding protein RAL 99.6 2.6E-15 8.8E-20 121.6 10.8 73 293-373 26-99 (110)
188 3zzy_A Polypyrimidine tract-bi 99.6 2.6E-15 8.9E-20 122.9 10.9 75 295-374 29-106 (130)
189 2hgm_A HNRPF protein, heteroge 99.6 6.2E-16 2.1E-20 126.9 6.9 79 292-373 40-120 (126)
190 2kvi_A Nuclear polyadenylated 99.6 1E-15 3.5E-20 120.7 7.8 76 293-376 9-85 (96)
191 2lxi_A RNA-binding protein 10; 99.6 8.8E-16 3E-20 119.4 7.3 80 174-259 1-83 (91)
192 4fxv_A ELAV-like protein 1; RN 99.6 2.1E-16 7.4E-21 124.9 3.7 79 173-257 18-97 (99)
193 2diu_A KIAA0430 protein; struc 99.6 1.7E-15 5.7E-20 114.5 8.2 71 294-374 8-84 (96)
194 2hvz_A Splicing factor, argini 99.6 1.3E-15 4.5E-20 121.3 7.9 74 175-260 1-76 (101)
195 1sjr_A Polypyrimidine tract-bi 99.6 3.3E-15 1.1E-19 127.1 10.6 76 295-374 47-124 (164)
196 1wg1_A KIAA1579 protein, homol 99.6 1.9E-15 6.5E-20 117.0 8.3 74 293-373 4-77 (88)
197 3egn_A RNA-binding protein 40; 99.6 7.6E-16 2.6E-20 131.2 6.6 81 292-375 43-131 (143)
198 1x5p_A Negative elongation fac 99.6 6.8E-15 2.3E-19 116.2 11.4 77 292-376 13-89 (97)
199 2e5g_A U6 snRNA-specific termi 99.6 3.5E-15 1.2E-19 117.1 9.6 76 293-374 7-82 (94)
200 1sjq_A Polypyrimidine tract-bi 99.6 2.9E-15 1E-19 118.0 9.0 77 172-260 14-93 (105)
201 2dit_A HIV TAT specific factor 99.6 8.2E-15 2.8E-19 118.9 12.0 96 415-517 11-108 (112)
202 2e5i_A Heterogeneous nuclear r 99.6 8.8E-15 3E-19 119.4 10.9 73 296-374 27-102 (124)
203 1jmt_A Splicing factor U2AF 35 99.6 5E-15 1.7E-19 117.9 9.0 70 437-510 34-104 (104)
204 3beg_B Splicing factor, argini 99.6 2.4E-15 8.4E-20 122.6 7.3 74 293-373 15-93 (115)
205 1fj7_A Nucleolin RBD1, protein 99.6 1.3E-14 4.6E-19 115.4 11.3 81 172-259 15-95 (101)
206 3r27_A HnRNP L, heterogeneous 99.6 3.9E-15 1.3E-19 116.0 7.8 75 172-258 19-96 (100)
207 2lkz_A RNA-binding protein 5; 99.6 7.8E-16 2.7E-20 120.2 3.5 82 171-258 6-94 (95)
208 3d2w_A TAR DNA-binding protein 99.6 9.8E-15 3.3E-19 112.9 9.4 74 292-374 9-84 (89)
209 3lqv_A PRE-mRNA branch site pr 99.6 1.9E-15 6.5E-20 123.5 5.7 99 173-320 7-109 (115)
210 2hzc_A Splicing factor U2AF 65 99.6 7.7E-15 2.6E-19 113.4 8.5 71 293-370 5-86 (87)
211 2dnl_A Cytoplasmic polyadenyla 99.5 6.9E-15 2.4E-19 119.8 7.7 77 292-371 6-85 (114)
212 2hzc_A Splicing factor U2AF 65 99.5 2.6E-14 8.9E-19 110.4 9.6 84 172-256 4-87 (87)
213 1wex_A Hypothetical protein (r 99.5 1.5E-14 5.3E-19 114.8 8.3 77 172-260 13-92 (104)
214 1x4d_A Matrin 3; structural ge 99.5 5.6E-15 1.9E-19 116.4 5.5 77 172-260 13-93 (102)
215 2cq1_A PTB-like protein L; RRM 99.5 1.6E-14 5.3E-19 114.1 7.8 77 172-260 13-92 (101)
216 3pgw_S U1-70K; protein-RNA com 99.5 2.3E-14 7.8E-19 144.1 11.0 67 444-513 117-183 (437)
217 1x4g_A Nucleolysin TIAR; struc 99.5 5.5E-14 1.9E-18 113.5 11.2 79 170-260 21-100 (109)
218 2cpz_A CUG triplet repeat RNA- 99.5 6.6E-15 2.3E-19 120.3 5.7 84 171-260 22-106 (115)
219 3v4m_A Splicing factor U2AF 65 99.5 3E-14 1E-18 113.5 9.2 81 293-373 4-96 (105)
220 2cqi_A Nucleolysin TIAR; RNA r 99.5 5.9E-14 2E-18 112.1 11.0 77 171-259 12-93 (103)
221 2la4_A Nuclear and cytoplasmic 99.5 1.7E-14 5.7E-19 114.9 7.6 75 172-258 25-100 (101)
222 2bz2_A Negative elongation fac 99.5 2.9E-14 9.9E-19 117.0 9.2 76 292-375 37-112 (121)
223 2e5j_A Methenyltetrahydrofolat 99.5 3.1E-14 1.1E-18 112.3 8.9 77 172-259 17-94 (97)
224 2jvr_A Nucleolar protein 3; RN 99.5 3.4E-14 1.2E-18 114.1 8.6 74 172-257 26-103 (111)
225 2cpx_A Hypothetical protein FL 99.5 6.3E-14 2.1E-18 114.5 10.4 83 172-260 23-106 (115)
226 2ytc_A PRE-mRNA-splicing facto 99.5 1.9E-14 6.5E-19 110.6 6.8 73 172-256 10-84 (85)
227 1why_A Hypothetical protein ri 99.5 4.8E-14 1.6E-18 111.3 9.1 75 173-259 16-93 (97)
228 1x4a_A Splicing factor, argini 99.5 3.7E-14 1.3E-18 114.5 8.7 77 172-260 20-100 (109)
229 2mss_A Protein (musashi1); RNA 99.5 7.4E-15 2.5E-19 109.9 4.2 75 176-256 1-75 (75)
230 2xnq_A Nuclear polyadenylated 99.5 4.1E-14 1.4E-18 111.4 8.7 74 171-258 19-94 (97)
231 1x5u_A Splicing factor 3B subu 99.5 1.1E-14 3.8E-19 116.8 5.3 83 172-260 13-96 (105)
232 2dgx_A KIAA0430 protein; RRM d 99.5 7E-14 2.4E-18 110.0 9.7 75 173-259 8-90 (96)
233 2a3j_A U1 small nuclear ribonu 99.5 2.8E-14 9.5E-19 117.7 7.7 80 173-261 28-112 (127)
234 2ad9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.6E-19 116.8 6.1 77 172-260 29-108 (119)
235 1wf0_A TDP-43, TAR DNA-binding 99.5 1.3E-14 4.6E-19 112.2 5.3 76 293-375 4-79 (88)
236 2cpj_A Non-POU domain-containi 99.5 1.7E-14 5.7E-19 114.4 5.9 76 172-259 13-89 (99)
237 3ue2_A Poly(U)-binding-splicin 99.5 7.1E-14 2.4E-18 113.4 9.6 79 294-372 20-107 (118)
238 2lea_A Serine/arginine-rich sp 99.5 9E-15 3.1E-19 122.7 4.4 68 444-514 62-129 (135)
239 1x5t_A Splicing factor 3B subu 99.5 1.3E-14 4.6E-19 114.3 5.1 83 173-260 4-87 (96)
240 2voo_A Lupus LA protein; RNA-b 99.5 8.6E-14 2.9E-18 124.2 10.7 77 295-373 110-186 (193)
241 2cqc_A Arginine/serine-rich sp 99.5 4.5E-14 1.6E-18 111.0 8.0 74 172-257 13-93 (95)
242 3s8s_A Histone-lysine N-methyl 99.5 4.8E-14 1.6E-18 113.5 8.2 67 444-513 21-87 (110)
243 2dnp_A RNA-binding protein 14; 99.5 1.2E-13 4E-18 107.4 9.9 74 172-259 7-81 (90)
244 2cpe_A RNA-binding protein EWS 99.5 1.7E-14 5.9E-19 117.4 5.3 91 170-260 11-104 (113)
245 2cpd_A Apobec-1 stimulating pr 99.5 1.3E-13 4.3E-18 109.3 10.2 76 171-260 12-90 (99)
246 2jvo_A Nucleolar protein 3; nu 99.5 4.1E-14 1.4E-18 113.7 7.4 76 170-259 27-103 (108)
247 2cq3_A RNA-binding protein 9; 99.5 9.1E-14 3.1E-18 111.0 9.3 78 171-260 12-94 (103)
248 3s7r_A Heterogeneous nuclear r 99.5 6.8E-15 2.3E-19 113.7 2.6 80 171-256 8-87 (87)
249 3p5t_L Cleavage and polyadenyl 99.5 3.9E-15 1.3E-19 115.7 1.2 79 175-259 2-83 (90)
250 2dnq_A RNA-binding protein 4B; 99.5 8E-14 2.7E-18 108.3 8.6 74 173-260 7-81 (90)
251 2cph_A RNA binding motif prote 99.5 8.9E-14 3E-18 111.9 9.1 78 171-260 12-98 (107)
252 1u6f_A Tcubp1, RNA-binding pro 99.5 7.1E-14 2.4E-18 118.3 8.9 85 170-260 38-123 (139)
253 1x4f_A Matrin 3; structural ge 99.5 1.7E-14 5.8E-19 115.3 4.6 78 171-260 22-103 (112)
254 2khc_A Testis-specific RNP-typ 99.5 8.9E-14 3E-18 114.1 9.1 74 171-256 37-117 (118)
255 2jwn_A Embryonic polyadenylate 99.5 2.4E-14 8.2E-19 118.6 5.7 85 169-259 31-115 (124)
256 3ucg_A Polyadenylate-binding p 99.5 1.3E-14 4.3E-19 112.7 3.7 81 172-258 4-84 (89)
257 1whx_A Hypothetical protein ri 99.5 3.7E-14 1.3E-18 114.7 6.6 75 172-258 8-83 (111)
258 1x4c_A Splicing factor, argini 99.5 1E-13 3.4E-18 111.7 9.1 75 173-260 14-94 (108)
259 1s79_A Lupus LA protein; RRM, 99.5 4.4E-14 1.5E-18 112.3 6.8 75 172-258 9-88 (103)
260 2dit_A HIV TAT specific factor 99.5 2.5E-13 8.6E-18 110.0 11.4 80 291-374 12-102 (112)
261 2err_A Ataxin-2-binding protei 99.5 2.9E-14 1E-18 115.0 5.6 82 169-258 24-106 (109)
262 2cqp_A RNA-binding protein 12; 99.5 2.4E-14 8.1E-19 113.3 5.0 79 173-257 14-93 (98)
263 2dgo_A Cytotoxic granule-assoc 99.5 1.2E-13 4.1E-18 112.7 9.3 79 171-261 12-97 (115)
264 2dgp_A Bruno-like 4, RNA bindi 99.5 3.9E-14 1.3E-18 113.8 6.3 84 171-260 10-97 (106)
265 2cpf_A RNA binding motif prote 99.5 7.3E-14 2.5E-18 110.5 7.7 82 173-260 4-89 (98)
266 2fy1_A RNA-binding motif prote 99.5 1.1E-13 3.9E-18 112.8 9.0 82 172-260 5-87 (116)
267 3md1_A Nuclear and cytoplasmic 99.5 6.3E-14 2.2E-18 107.1 7.0 72 175-258 2-80 (83)
268 2dgu_A Heterogeneous nuclear r 99.5 3.4E-13 1.2E-17 107.6 11.3 75 173-261 10-85 (103)
269 2rs2_A Musashi-1, RNA-binding 99.5 1.1E-13 3.9E-18 111.5 8.6 79 169-259 20-104 (109)
270 3u1l_A PRE-mRNA-splicing facto 99.5 7E-14 2.4E-18 127.3 8.2 77 292-374 132-229 (240)
271 1iqt_A AUF1, heterogeneous nuc 99.5 2.1E-14 7.3E-19 107.4 4.0 74 176-255 1-74 (75)
272 1x4b_A Heterogeneous nuclear r 99.5 3.1E-14 1.1E-18 116.4 5.3 85 170-260 23-107 (116)
273 2cq2_A Hypothetical protein LO 99.5 1.2E-13 4.3E-18 110.3 8.4 75 173-259 24-106 (114)
274 2ek1_A RNA-binding protein 12; 99.5 2.3E-14 7.8E-19 112.7 4.0 78 174-257 15-93 (95)
275 1wel_A RNA-binding protein 12; 99.5 1.6E-14 5.3E-19 119.7 3.2 81 172-258 23-103 (124)
276 2e5h_A Zinc finger CCHC-type a 99.5 5E-13 1.7E-17 104.7 11.7 63 444-509 31-93 (94)
277 2cpi_A CCR4-NOT transcription 99.5 4.6E-13 1.6E-17 108.3 11.8 70 444-513 30-102 (111)
278 2do4_A Squamous cell carcinoma 99.5 1.4E-13 4.6E-18 109.3 8.4 77 171-259 14-96 (100)
279 3ns6_A Eukaryotic translation 99.5 1.9E-13 6.4E-18 108.3 9.1 86 420-512 7-93 (100)
280 4a8x_A RNA-binding protein wit 99.5 1.1E-13 3.8E-18 107.0 7.6 72 174-257 4-83 (88)
281 1x4h_A RNA-binding protein 28; 99.5 2.2E-13 7.6E-18 110.4 9.7 77 172-260 13-102 (111)
282 2dnh_A Bruno-like 5, RNA bindi 99.5 8.7E-14 3E-18 111.6 7.2 77 172-260 13-98 (105)
283 2d9p_A Polyadenylate-binding p 99.5 6.8E-14 2.3E-18 111.7 6.5 78 171-260 12-94 (103)
284 2ywk_A Putative RNA-binding pr 99.5 7.8E-14 2.7E-18 109.6 6.6 75 171-257 13-93 (95)
285 2fc9_A NCL protein; structure 99.5 4.4E-14 1.5E-18 112.4 5.3 79 171-259 12-91 (101)
286 2j76_E EIF-4B, EIF4B, eukaryot 99.5 5.8E-15 2E-19 117.2 0.1 81 171-258 16-97 (100)
287 2cq4_A RNA binding motif prote 99.5 8E-14 2.7E-18 113.6 6.9 76 170-257 21-102 (114)
288 2dnz_A Probable RNA-binding pr 99.5 2.2E-13 7.4E-18 107.0 9.1 67 444-513 20-86 (95)
289 2f3j_A RNA and export factor b 99.5 4.1E-13 1.4E-17 118.0 11.8 79 173-258 87-166 (177)
290 3bs9_A Nucleolysin TIA-1 isofo 99.4 1.3E-13 4.6E-18 106.3 7.4 65 444-511 21-85 (87)
291 2cpy_A RNA-binding protein 12; 99.4 2.5E-14 8.7E-19 116.4 3.4 81 172-259 13-94 (114)
292 2cqh_A IGF-II mRNA-binding pro 99.4 5.3E-14 1.8E-18 110.1 5.1 75 173-259 7-83 (93)
293 1jmt_A Splicing factor U2AF 35 99.4 5.1E-14 1.7E-18 112.0 5.0 72 299-371 20-103 (104)
294 3n9u_C Cleavage and polyadenyl 99.4 3.3E-14 1.1E-18 122.1 3.9 81 172-258 53-136 (156)
295 2cqb_A Peptidyl-prolyl CIS-tra 99.4 2.8E-13 9.5E-18 108.0 9.0 69 444-515 27-95 (102)
296 3dxb_A Thioredoxin N-terminall 99.4 1.7E-13 5.9E-18 125.8 8.9 100 417-521 122-222 (222)
297 2diu_A KIAA0430 protein; struc 99.4 2.7E-13 9.3E-18 102.4 8.2 69 177-261 12-86 (96)
298 2db1_A Heterogeneous nuclear r 99.4 3.5E-14 1.2E-18 116.2 3.7 79 172-257 15-96 (118)
299 1x5p_A Negative elongation fac 99.4 3.9E-13 1.3E-17 106.0 9.5 74 172-259 13-87 (97)
300 1whw_A Hypothetical protein ri 99.4 3.6E-13 1.2E-17 106.7 9.3 68 444-514 23-90 (99)
301 3mdf_A Peptidyl-prolyl CIS-tra 99.4 2E-13 6.9E-18 104.8 7.5 63 444-509 22-84 (85)
302 2nlw_A Eukaryotic translation 99.4 1.8E-13 6.1E-18 109.6 7.5 80 172-259 13-100 (105)
303 2cqd_A RNA-binding region cont 99.4 6.9E-13 2.4E-17 108.3 11.2 77 170-259 13-96 (116)
304 1rk8_A CG8781-PA, CG8781-PA pr 99.4 3.1E-13 1E-17 117.8 9.6 141 341-513 11-153 (165)
305 2dgv_A HnRNP M, heterogeneous 99.4 8.9E-14 3E-18 108.6 5.5 80 172-259 6-86 (92)
306 2m2b_A RNA-binding protein 10; 99.4 4.9E-14 1.7E-18 117.8 4.2 85 171-260 20-109 (131)
307 1wf1_A RNA-binding protein RAL 99.4 2E-13 6.8E-18 110.4 7.7 72 173-258 26-99 (110)
308 1p1t_A Cleavage stimulation fa 99.4 2.3E-14 8E-19 114.7 1.9 85 171-261 5-90 (104)
309 2dgt_A RNA-binding protein 30; 99.4 2.9E-13 9.8E-18 105.6 8.1 75 172-260 8-83 (92)
310 2cq0_A Eukaryotic translation 99.4 6.4E-13 2.2E-17 106.0 10.3 67 444-513 30-96 (103)
311 1fjc_A Nucleolin RBD2, protein 99.4 8.8E-14 3E-18 109.5 5.1 78 171-259 13-91 (96)
312 2e5g_A U6 snRNA-specific termi 99.4 2.8E-13 9.7E-18 106.1 7.9 76 173-260 7-83 (94)
313 2x1f_A MRNA 3'-END-processing 99.4 4.2E-13 1.5E-17 105.5 8.8 68 444-514 17-84 (96)
314 2dgs_A DAZ-associated protein 99.4 6.2E-13 2.1E-17 105.3 9.8 67 444-514 25-91 (99)
315 1x5s_A Cold-inducible RNA-bind 99.4 2.7E-13 9.3E-18 108.0 7.8 68 444-514 27-94 (102)
316 2dh8_A DAZ-associated protein 99.4 2.7E-14 9.1E-19 114.6 1.8 84 171-260 13-96 (105)
317 2krb_A Eukaryotic translation 99.4 1.4E-13 4.7E-18 104.6 5.7 71 175-253 2-80 (81)
318 1nu4_A U1A RNA binding domain; 99.4 2.3E-13 7.8E-18 107.4 7.1 77 172-260 6-90 (97)
319 2dis_A Unnamed protein product 99.4 8.8E-13 3E-17 106.4 10.7 77 173-260 7-93 (109)
320 2dhg_A TRNA selenocysteine ass 99.4 3E-13 1E-17 108.2 7.8 82 172-260 7-91 (104)
321 2do0_A HnRNP M, heterogeneous 99.4 3.8E-13 1.3E-17 109.6 8.5 76 172-259 13-94 (114)
322 2cqg_A TDP-43, TAR DNA-binding 99.4 1.1E-13 3.8E-18 110.5 5.2 83 171-260 12-94 (103)
323 2dnm_A SRP46 splicing factor; 99.4 7E-13 2.4E-17 105.8 9.9 67 444-513 28-94 (103)
324 1wg1_A KIAA1579 protein, homol 99.4 9.9E-14 3.4E-18 107.2 4.6 73 173-258 4-77 (88)
325 2kxn_B Transformer-2 protein h 99.4 4.4E-13 1.5E-17 111.3 8.7 67 444-513 61-127 (129)
326 2dgw_A Probable RNA-binding pr 99.4 7.9E-14 2.7E-18 108.6 3.9 80 172-259 8-87 (91)
327 3ex7_B RNA-binding protein 8A; 99.4 2.3E-13 7.9E-18 113.0 6.7 76 172-259 20-102 (126)
328 2kvi_A Nuclear polyadenylated 99.4 1.4E-13 4.7E-18 108.3 4.9 75 171-259 7-83 (96)
329 2hgl_A HNRPF protein, heteroge 99.4 4.7E-14 1.6E-18 117.7 2.1 79 172-257 42-123 (136)
330 2fc8_A NCL protein; structure 99.4 8.5E-14 2.9E-18 111.0 3.5 81 171-260 12-93 (102)
331 1x4e_A RNA binding motif, sing 99.4 6.8E-14 2.3E-18 107.4 2.5 79 173-257 4-83 (85)
332 2la6_A RNA-binding protein FUS 99.4 1.1E-12 3.8E-17 103.7 9.6 64 444-510 28-99 (99)
333 2dnn_A RNA-binding protein 12; 99.4 2.9E-13 1E-17 108.4 6.2 76 174-257 16-91 (109)
334 2div_A TRNA selenocysteine ass 99.4 2.7E-13 9.3E-18 107.4 5.9 68 444-514 24-96 (99)
335 3ulh_A THO complex subunit 4; 99.4 5.6E-13 1.9E-17 107.2 7.7 63 444-510 44-106 (107)
336 1h2v_Z 20 kDa nuclear CAP bind 99.4 4.1E-13 1.4E-17 116.0 7.2 78 171-260 36-120 (156)
337 2ki2_A SS-DNA binding protein 99.4 2.9E-14 1E-18 110.8 -0.1 78 175-259 2-80 (90)
338 2jrs_A RNA-binding protein 39; 99.4 5.7E-13 2E-17 107.1 7.5 66 444-512 41-106 (108)
339 1uaw_A Mouse-musashi-1; RNP-ty 99.4 4.6E-14 1.6E-18 106.1 1.0 75 175-256 1-76 (77)
340 2lmi_A GRSF-1, G-rich sequence 99.4 5.5E-14 1.9E-18 113.0 1.3 80 172-258 9-91 (107)
341 3egn_A RNA-binding protein 40; 99.4 4.5E-13 1.5E-17 113.9 6.8 88 172-260 43-131 (143)
342 1p27_B RNA-binding protein 8A; 99.4 1.4E-12 4.7E-17 104.7 9.2 66 444-512 38-103 (106)
343 1oo0_B CG8781-PA, drosophila Y 99.4 2.2E-12 7.6E-17 104.2 10.5 66 444-512 41-106 (110)
344 2dha_A FLJ20171 protein; RRM d 99.4 1E-13 3.6E-18 113.4 2.6 84 171-257 20-103 (123)
345 2lcw_A RNA-binding protein FUS 99.1 4E-14 1.4E-18 115.8 0.0 89 171-259 4-95 (116)
346 1wi8_A EIF-4B, eukaryotic tran 99.4 1.5E-12 5.3E-17 104.0 9.2 67 444-515 30-97 (104)
347 3s6e_A RNA-binding protein 39; 99.4 2.1E-12 7.3E-17 103.9 9.8 76 293-372 6-91 (114)
348 3beg_B Splicing factor, argini 99.4 4.7E-13 1.6E-17 109.0 5.9 72 173-257 15-92 (115)
349 2hgm_A HNRPF protein, heteroge 99.4 9.7E-14 3.3E-18 113.8 1.2 74 172-256 40-118 (126)
350 2dng_A Eukaryotic translation 99.4 1.6E-12 5.6E-17 103.6 8.3 67 444-515 30-96 (103)
351 1sjr_A Polypyrimidine tract-bi 99.4 1.9E-12 6.5E-17 110.1 8.9 74 174-259 46-124 (164)
352 2e5i_A Heterogeneous nuclear r 99.4 1.5E-12 5.2E-17 106.1 7.9 73 175-259 26-102 (124)
353 2hgn_A Heterogeneous nuclear r 99.3 7E-14 2.4E-18 117.0 -0.2 81 170-258 42-122 (139)
354 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 2.7E-12 9.2E-17 108.7 9.6 63 444-509 78-140 (140)
355 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.6E-12 1.9E-16 98.8 10.3 74 295-375 11-91 (100)
356 2kt5_A RNA and export factor-b 99.3 3.2E-12 1.1E-16 105.7 9.0 67 444-514 50-116 (124)
357 3q2s_C Cleavage and polyadenyl 99.3 2.1E-13 7.1E-18 125.2 1.7 80 173-258 67-149 (229)
358 2bz2_A Negative elongation fac 99.3 1.4E-12 4.8E-17 106.9 6.0 74 172-259 37-111 (121)
359 1x5o_A RNA binding motif, sing 99.3 2.3E-12 8E-17 104.8 7.2 80 171-257 22-110 (114)
360 2e44_A Insulin-like growth fac 99.3 1.1E-11 3.6E-16 97.5 10.5 64 444-514 30-94 (96)
361 3d2w_A TAR DNA-binding protein 99.3 3.1E-12 1.1E-16 98.7 7.2 74 171-259 8-84 (89)
362 1wg5_A Heterogeneous nuclear r 99.3 5E-12 1.7E-16 100.9 8.5 68 444-516 30-98 (104)
363 1wez_A HnRNP H', FTP-3, hetero 99.3 3.4E-12 1.2E-16 101.2 6.8 70 444-519 30-99 (102)
364 1wf0_A TDP-43, TAR DNA-binding 99.3 2.8E-12 9.6E-17 99.0 5.4 75 173-260 4-79 (88)
365 3u1l_A PRE-mRNA-splicing facto 99.3 3.6E-12 1.2E-16 116.1 6.6 77 171-259 131-229 (240)
366 3zzy_A Polypyrimidine tract-bi 99.3 2E-11 7E-16 99.8 10.0 63 444-514 43-108 (130)
367 3tht_A Alkylated DNA repair pr 99.3 1.1E-11 3.6E-16 119.3 9.5 77 291-373 15-98 (345)
368 2xs2_A Deleted in azoospermia- 99.3 1.1E-12 3.7E-17 104.5 2.0 78 172-257 7-84 (102)
369 2dnl_A Cytoplasmic polyadenyla 99.2 4.2E-12 1.4E-16 103.2 4.0 75 172-255 6-84 (114)
370 2j8a_A Histone-lysine N-methyl 99.2 1.6E-11 5.5E-16 98.3 6.6 65 444-511 21-95 (136)
371 2voo_A Lupus LA protein; RNA-b 99.2 1.8E-11 6.1E-16 109.2 6.1 78 171-260 106-188 (193)
372 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.4E-11 2.2E-15 92.8 5.4 61 443-513 31-91 (100)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 9E-10 3.1E-14 82.4 10.6 62 441-514 27-88 (91)
374 3tht_A Alkylated DNA repair pr 99.0 4E-10 1.4E-14 108.4 8.1 74 171-256 15-96 (345)
375 2dnr_A Synaptojanin-1; RRM dom 99.0 7.7E-10 2.6E-14 82.8 7.8 70 295-373 8-85 (91)
376 1owx_A Lupus LA protein, SS-B, 99.0 9.2E-10 3.1E-14 88.3 8.6 75 292-372 16-94 (121)
377 3dxb_A Thioredoxin N-terminall 98.9 3.7E-09 1.3E-13 96.8 10.1 67 306-372 141-211 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 2.4E-09 8.3E-14 80.4 5.4 58 441-510 36-93 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.8 6.9E-09 2.4E-13 78.0 7.2 69 295-372 16-93 (95)
380 1owx_A Lupus LA protein, SS-B, 98.6 8.5E-08 2.9E-12 76.9 5.9 71 173-255 17-92 (121)
381 2l9w_A U4/U6 snRNA-associated- 98.5 1.3E-07 4.5E-12 72.2 6.2 59 444-511 36-99 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 5E-07 1.7E-11 69.1 9.3 73 293-371 20-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.0 3.2E-05 1.1E-09 58.8 8.7 73 174-255 8-80 (104)
384 1wey_A Calcipressin 1; structu 97.9 3.5E-05 1.2E-09 58.9 7.3 76 292-373 3-83 (104)
385 1whv_A Poly(A)-specific ribonu 97.6 0.0003 1E-08 52.8 8.6 54 295-357 17-70 (100)
386 1wey_A Calcipressin 1; structu 97.5 0.0003 1E-08 53.8 7.9 63 442-513 23-85 (104)
387 2dhx_A Poly (ADP-ribose) polym 97.5 0.00079 2.7E-08 51.2 9.9 72 293-373 7-83 (104)
388 1uw4_A UPF3X; nonsense mediate 97.3 0.0013 4.4E-08 49.5 9.0 67 295-361 2-70 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.3 0.00094 3.2E-08 52.6 8.3 72 294-373 24-96 (119)
390 1wwh_A Nucleoporin 35, nucleop 97.1 0.0021 7.3E-08 50.6 8.1 74 171-257 21-95 (119)
391 3ctr_A Poly(A)-specific ribonu 96.9 0.0018 6.1E-08 48.8 6.0 53 296-357 8-60 (101)
392 3p3d_A Nucleoporin 53; structu 96.6 0.0018 6.2E-08 51.7 4.4 68 444-512 21-99 (132)
393 3p3d_A Nucleoporin 53; structu 96.2 0.0035 1.2E-07 50.1 3.8 82 174-256 7-96 (132)
394 2l08_A Regulator of nonsense t 95.8 0.0058 2E-07 46.2 3.3 67 295-361 10-78 (97)
395 3pq1_A Poly(A) RNA polymerase; 95.1 0.013 4.3E-07 58.3 3.7 55 295-355 54-108 (464)
396 1uw4_A UPF3X; nonsense mediate 95.1 0.017 6E-07 43.3 3.6 62 175-248 2-72 (91)
397 1whv_A Poly(A)-specific ribonu 93.2 0.37 1.3E-05 36.1 7.3 41 444-495 30-70 (100)
398 3pq1_A Poly(A) RNA polymerase; 92.7 0.031 1.1E-06 55.5 1.3 62 169-243 48-110 (464)
399 3ctr_A Poly(A)-specific ribonu 92.2 0.29 9.9E-06 36.8 5.6 41 444-495 20-60 (101)
400 2l08_A Regulator of nonsense t 92.1 0.099 3.4E-06 39.4 3.1 71 174-248 9-80 (97)
401 3d45_A Poly(A)-specific ribonu 86.7 1.5 5E-05 44.5 7.8 54 295-357 441-494 (507)
402 1jmt_B Splicing factor U2AF 65 76.5 0.57 1.9E-05 26.1 0.2 17 112-128 6-22 (28)
403 2g0c_A ATP-dependent RNA helic 59.6 24 0.00083 24.8 6.0 59 305-372 12-75 (76)
404 3d45_A Poly(A)-specific ribonu 59.4 24 0.00081 35.6 8.0 42 444-496 454-495 (507)
405 4eyt_A Telomerase associated p 50.1 69 0.0024 23.1 9.0 57 294-358 12-68 (129)
406 2e7g_A Putative ribosome-bindi 46.4 54 0.0018 26.0 6.6 36 453-495 43-79 (129)
407 4e8u_A Putative uncharacterize 40.1 58 0.002 27.2 6.0 51 295-348 13-74 (172)
408 3lpe_A Putative transcription 35.7 68 0.0023 23.6 5.3 34 456-497 40-73 (92)
409 4eyt_A Telomerase associated p 33.9 1.2E+02 0.004 22.0 5.9 23 475-497 47-69 (129)
410 2g0c_A ATP-dependent RNA helic 31.5 54 0.0018 22.9 4.0 43 455-509 32-74 (76)
411 2kkc_A Sequestosome-1; P62, PB 28.2 1.7E+02 0.0059 21.9 6.4 50 437-495 42-91 (102)
412 2ktr_A Sequestosome-1; autopha 21.8 2.6E+02 0.0089 21.6 6.4 50 437-495 57-106 (117)
413 3h7h_B Transcription elongatio 21.4 76 0.0026 24.1 3.3 37 455-499 40-76 (106)
414 3j21_T 50S ribosomal protein L 20.2 2.5E+02 0.0086 20.3 6.3 56 297-355 25-82 (86)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.4e-41 Score=325.91 Aligned_cols=248 Identities=23% Similarity=0.321 Sum_probs=210.7
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
.....++|||+|||.++|+++|+++|..|| |..+.++.++|||||+|.+.++|..|+ .|+|..+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-------------i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 84 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE-------------LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRE 84 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHHHHHHHTTTSC-------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-------------CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 345678999999999999999999999997 455666899999999999999999999 699999999
Q ss_pred ceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 009954 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 328 (521)
+.|.|.++. ..++|||+|||..+++++|.++|+.||.|..+.++.
T Consensus 85 ~~i~v~~~~-----------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 129 (284)
T 3smz_A 85 RELSVQLQP-----------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY 129 (284)
T ss_dssp EECEEEECC-----------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred eEEEEEecC-----------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 999998632 125899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 009954 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG 408 (521)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (521)
++.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+.+......
T Consensus 130 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~----------------------------- 180 (284)
T 3smz_A 130 SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPA----------------------------- 180 (284)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTT-----------------------------
T ss_pred eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcc-----------------------------
Confidence 988999999999999999999999999999999999999999975221100
Q ss_pred CCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHH
Q 009954 409 GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCA 488 (521)
Q Consensus 409 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~ 488 (521)
.....++.+.|+... + +++++|+++|+.||.|..|.|+.+. +|. .+|+|||+|.+.++|.
T Consensus 181 -------~~~~~~l~v~nlp~~--~-------~~~~~l~~~f~~~G~i~~v~i~~~~-~g~---~~g~afV~f~~~~~A~ 240 (284)
T 3smz_A 181 -------LLHSRCLCVDRLPPG--F-------NDVDALCRALSAVHSPTFCQLACGQ-DGQ---LKGFAVLEYETAEMAE 240 (284)
T ss_dssp -------TTSCSEEEEECCCTT--C-------CCHHHHHHHTCSSSCCSEEEEEECS-SCC---EEEEEEEECSSHHHHH
T ss_pred -------cCCccEEEEecCCcc--c-------CCHHHHHHHhhCCCCeEEEEEEECC-CCC---cccEEEEEeCCHHHHH
Confidence 022233344443221 0 0115999999999999999999876 443 3689999999999999
Q ss_pred HHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 489 TAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 489 ~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
+|+..|||..|+|+.|+|.|+.....
T Consensus 241 ~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 241 EAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99999999999999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=9.1e-41 Score=323.16 Aligned_cols=248 Identities=16% Similarity=0.240 Sum_probs=196.2
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC----CCCeEEEEecCHHHHHHHHHccCce
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAMALDGII 245 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~a~~A~~l~g~~ 245 (521)
.....++|||+|||+.+|+++|+++|..||. |..+.+.. ++|||||+|.+.++|.+|++++|..
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~ 104 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGP------------IIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKV 104 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSC------------EEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcE
Confidence 4566889999999999999999999999997 44444433 5799999999999999999999999
Q ss_pred ecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-CeeEE
Q 009954 246 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-TLHGF 324 (521)
Q Consensus 246 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G-~i~~v 324 (521)
+.|+.|.|.++ ..++|||+|||..+++++|.++|+.|| .|..|
T Consensus 105 ~~g~~i~v~~~------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v 148 (292)
T 2ghp_A 105 VGQNEIIVSHL------------------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSI 148 (292)
T ss_dssp ETTEECEEEEC------------------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEE
T ss_pred eCCcEEEEEEC------------------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEE
Confidence 99999999863 136899999999999999999999999 99999
Q ss_pred EEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCC
Q 009954 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGM 404 (521)
Q Consensus 325 ~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (521)
.|+.+. .|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+.+....... .
T Consensus 149 ~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~------------------~----- 204 (292)
T 2ghp_A 149 RLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT------------------D----- 204 (292)
T ss_dssp ECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC------------------------------
T ss_pred EEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc------------------c-----
Confidence 999886 4889999999999999999999999999999999999999763221110 0
Q ss_pred CCCCCCCCCCCCCcceEEEeeCc-CCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCC-CCCCCCCccEEEEEec
Q 009954 405 NTLGGGMSLFGETLAKVLCLTEA-ITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQ-NGGETPGVGKVFLEYY 482 (521)
Q Consensus 405 ~~~~~~~~~~~~~~~~v~~l~~~-~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~-~~~~~~g~g~afV~F~ 482 (521)
..........|.+|+.. ++. ++|+++|+.||.|..|.|+.+.. ++.. +|+|||+|.
T Consensus 205 ------~~~~~~~~l~v~nlp~~~~t~-------------~~l~~~F~~~G~v~~v~i~~~~~~tg~~---~g~afV~F~ 262 (292)
T 2ghp_A 205 ------SATLEGREIMIRNLSTELLDE-------------NLLRESFEGFGSIEKINIPAGQKEHSFN---NCCAFMVFE 262 (292)
T ss_dssp --------CCTTTEEEEEEECTTTCCH-------------HHHHHHHGGGSCEEEEECCSCCC---CC---CEEEEEEES
T ss_pred ------ccCCCCceEEEECCCcccCCH-------------HHHHHHHhccCCeeEEEEEecCCcCCCC---ceEEEEEeC
Confidence 00001123333344433 333 59999999999999999999764 2443 588999999
Q ss_pred CHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 483 DAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 483 ~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
+.++|.+|+ .|||..|+|+.|.|.|+...
T Consensus 263 ~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp SHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999 99999999999999998764
No 3
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=5.9e-32 Score=239.97 Aligned_cols=170 Identities=52% Similarity=0.917 Sum_probs=152.7
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~ 252 (521)
+.++|||+|||+.+|+++|+++|++||.+.+... .++..+.++.+..++|||||+|.+.++|.+|+.++|..+.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~-~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhccccc-CCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceee
Confidence 4679999999999999999999999998876421 223358999999999999999999999999999999999999999
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 332 (521)
|.++..+... ...++|||+|||..+++++|+++|++||.|..|.++.++.+
T Consensus 82 v~~~~~~~~~-----------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~ 132 (172)
T 2g4b_A 82 IRRPHDYQPL-----------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 132 (172)
T ss_dssp EECCSSCCCC-----------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT
T ss_pred ecCCcccCCC-----------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCC
Confidence 9986543321 22468999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.||.
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 133 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp CSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999999999983
No 4
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.3e-31 Score=243.45 Aligned_cols=194 Identities=46% Similarity=0.795 Sum_probs=161.0
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~ 252 (521)
..++|||+|||+.+|+++|+++|..||.+.+... .++..+.++.++.++|||||+|.+.++|.+|+.|||..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~-~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCS-SSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhccccc-CCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 4689999999999999999999999999877532 233458999999999999999999999999999999999999999
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 332 (521)
|.++..+.........+....+ ...........++|||+|||..+++++|+++|++||.|..|.+..++.+
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVP---------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCT---------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred EeCCCCCCCCCCCcCCCcCCCC---------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 9998776443221111100000 0011122345689999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCC
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQ 376 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 376 (521)
|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+.+...
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999987543
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=7.6e-32 Score=247.47 Aligned_cols=167 Identities=20% Similarity=0.359 Sum_probs=140.0
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
.+.++|||+|||+++|+++|+++|++||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .+++..+.|+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIR------VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE------EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 3467899999999999999999999999843311 0111223556799999999999999999 79999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 330 (521)
|++.++........ ....+|||+|||..+++++|+++|++||.|..|+|+.+
T Consensus 87 i~~~~~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d- 138 (213)
T 4f02_A 87 VRIMWSQRDPSLRK---------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 138 (213)
T ss_dssp CEEEECCCCTHHHH---------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-
T ss_pred cccccccccccccc---------------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc-
Confidence 99987543322110 12358999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.+.++|||||+|.+.++|.+||+.|||..|+|+.|.|.|+.+
T Consensus 139 -~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 139 -ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp -TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred -CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 355899999999999999999999999999999999999965
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-31 Score=230.64 Aligned_cols=159 Identities=23% Similarity=0.427 Sum_probs=141.8
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
++|||+|||.++|+++|+++|++||. |..+.+ +.++|||||+|.+.++|..|+ .|+|..+.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~------------i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGP------------IANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN 68 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSC------------EEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCC------------eEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC
Confidence 58999999999999999999999997 444444 446799999999999999999 899999999
Q ss_pred ceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 009954 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 328 (521)
+.|.|.++...... ......+|||+|||..+++++|.++|++||.|..+.++.
T Consensus 69 ~~i~v~~~~~~~~~---------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~ 121 (166)
T 3md3_A 69 NIVKINWAFQSQQS---------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 121 (166)
T ss_dssp EECEEEECCCCCCC---------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEE
T ss_pred CeeEEEEcCCCCCC---------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEe
Confidence 99999986543211 123346899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 329 ~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|++
T Consensus 122 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 122 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 98899999999999999999999999999999999999999985
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=1.1e-30 Score=239.63 Aligned_cols=169 Identities=15% Similarity=0.197 Sum_probs=140.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
.+.++|||+|||.++|+++|+++|++||.|.+|+|++++.+|.++|||||+|.+.++|.+||+.|+|..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhc
Q 009954 372 TASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
...... .. .. .....|-+|+..++. ++|+++|+
T Consensus 93 ~~~~~~----~~---------------~~---------------~~~l~v~nl~~~~t~-------------~~l~~~F~ 125 (213)
T 4f02_A 93 QRDPSL----RK---------------SG---------------VGNIFIKNLDKSIDN-------------KALYDTFS 125 (213)
T ss_dssp CCCTHH----HH---------------HC---------------TTEEEEESCCTTCCH-------------HHHHHHHG
T ss_pred cccccc----cc---------------cc---------------cccceECCcccccHH-------------HHHHHHHh
Confidence 642110 00 00 022222233333222 59999999
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
.||.|..|.|+.+.. ..+|+|||+|.+.++|.+||+.|||..|+|++|.|.|+...
T Consensus 126 ~~G~i~~~~i~~d~~-----~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 126 AFGNILSCKVVCDEN-----GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp GGSCEEEEEEEEETT-----EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred hcCCeEEEEeeccCC-----CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999999999998752 23689999999999999999999999999999999998754
No 8
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.9e-30 Score=229.74 Aligned_cols=165 Identities=18% Similarity=0.360 Sum_probs=145.8
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
....++|||+|||..+|+++|+++|..||.+.+. .+.+..++.++|||||+|.+.++|.+|++|||..+.|+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-------~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-------EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeE
Confidence 3457899999999999999999999999998762 377888999999999999999999999999999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 330 (521)
|.|.++...... .....++|||+|||..+++++|+++|++||.|..+ .
T Consensus 83 l~v~~~~~~~~~---------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~ 130 (175)
T 1fje_B 83 IKLEKPKGRDSK---------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----S 130 (175)
T ss_dssp EEEECCCCSSCS---------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----C
T ss_pred EEEecCCCcccc---------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----c
Confidence 999987643211 01233689999999999999999999999988766 3
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++
T Consensus 131 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 131 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 58999999999999999999999999999999999999999763
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.1e-30 Score=230.91 Aligned_cols=164 Identities=20% Similarity=0.323 Sum_probs=141.0
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||+.+|+++|+++|++||.|..+.+ +.+...+.++|||||+|.+.++|..|+ .|+|..+.|+.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRI------MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC------CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE------EEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 3578999999999999999999999997432111 111123446799999999999999999 699999999999
Q ss_pred EEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC
Q 009954 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331 (521)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 331 (521)
.|.++..... ....++|||+|||..+++++|+++|++||.|..+.++.++.
T Consensus 76 ~v~~~~~~~~-----------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 76 KVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp EEEECCCCSS-----------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred EEEecCCCcc-----------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 9998653221 12346899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHHcCCeeCC--eEEEEEEc
Q 009954 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRA 371 (521)
Q Consensus 332 ~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~ 371 (521)
+|.++|||||+|.+.++|.+|++.|||..|.| ++|.|.||
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999999999999999987 99999986
No 10
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=5.4e-31 Score=239.02 Aligned_cols=176 Identities=21% Similarity=0.392 Sum_probs=141.6
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
....++|||+|||+.+|+++|+++|+.||.|..+. .+.+..++.++|||||+|.+.++|.+|+++++..+.|+.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV------VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 34578999999999999999999999999843210 011111244578999999999999999988999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 330 (521)
|.|.++........ .......++|||+|||..+++++|+++|++||.|..|.|+.+.
T Consensus 84 l~v~~~~~~~~~~~-----------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 84 VEPKRAVSREDSQR-----------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CEEEECCC----------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred eeeecccCcccccc-----------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 99998654332110 0112334789999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCC
Q 009954 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQ 376 (521)
Q Consensus 331 ~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 376 (521)
.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.|+.++.+
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 8999999999999999999999986 89999999999999987443
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3.6e-31 Score=244.09 Aligned_cols=184 Identities=26% Similarity=0.395 Sum_probs=148.7
Q ss_pred hhhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCcee
Q 009954 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (521)
Q Consensus 168 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~ 246 (521)
.......++|||+|||.++|+++|+++|..||.|..+.+ +.+...+.++|||||+|.+.++|.+|+ .|++..|
T Consensus 22 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i------~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 95 (216)
T 2qfj_A 22 QGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDM------SWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML 95 (216)
T ss_dssp HHHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE------CCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CcccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEE------eecCCCCccCceEEEEeCCHHHHHHHHHHccCCee
Confidence 345567889999999999999999999999998432110 111123557899999999999999999 5999999
Q ss_pred cCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 009954 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (521)
Q Consensus 247 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i 326 (521)
.|+.|.|.++........... . ........++|||+|||..+++++|+++|++||.|..|.|
T Consensus 96 ~g~~l~v~~~~~~~~~~~~~~----------~--------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 157 (216)
T 2qfj_A 96 GGRNIKVGRPSNIGQAQPIID----------Q--------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL 157 (216)
T ss_dssp C-CCCEEECCSCCGGGHHHHH----------H--------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE
T ss_pred CCeeEEEecCCCccccchhhh----------h--------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE
Confidence 999999988665432211000 0 0000133468999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCC
Q 009954 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASG 375 (521)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (521)
+.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+.+..
T Consensus 158 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 158 ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9998899999999999999999999999999999999999999998743
No 12
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=9.7e-30 Score=224.41 Aligned_cols=157 Identities=22% Similarity=0.387 Sum_probs=138.7
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHH-HccCcee
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~g~~~ 246 (521)
.++|||+|||+.+|+++|+++|+.||.| ..+.+ +.++|||||+|.+.++|..|+ .|+|..+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i------------~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 69 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEI------------ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 69 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCE------------EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCe------------EEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 5789999999999999999999999974 44443 334599999999999999999 5999999
Q ss_pred cCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 009954 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (521)
Q Consensus 247 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i 326 (521)
.|+.|.|.++...... ....+|||+|||..+++++|+++|++||.|..+.+
T Consensus 70 ~g~~l~v~~~~~~~~~-----------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i 120 (167)
T 1fxl_A 70 QTKTIKVSYARPSSAS-----------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 120 (167)
T ss_dssp TTEECEEEECCCCCGG-----------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CCceEEEEecCCCccc-----------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEE
Confidence 9999999986533211 22368999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeE--EEEEEc
Q 009954 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT--LTVRRA 371 (521)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~--l~v~~~ 371 (521)
+.+..+|.++|||||+|.+.++|.+|++.|||..|.|+. |.|.||
T Consensus 121 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 121 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999889999999999999999999999999999999965 888886
No 13
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=7.7e-30 Score=225.35 Aligned_cols=164 Identities=24% Similarity=0.349 Sum_probs=140.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999975
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccc
Q 009954 374 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 453 (521)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~f 453 (521)
.... .+...+.+.++.... ++++|+++|++|
T Consensus 83 ~~~~---------------------------------------~~~~~l~v~nl~~~~----------t~~~l~~~f~~~ 113 (168)
T 1b7f_A 83 GGES---------------------------------------IKDTNLYVTNLPRTI----------TDDQLDTIFGKY 113 (168)
T ss_dssp CSST---------------------------------------TTTCEEEEESCCTTC----------CHHHHHHHHTSS
T ss_pred Cccc---------------------------------------CCCCCEEEeCCCCCC----------CHHHHHHhhhcC
Confidence 3211 222334444432211 125999999999
Q ss_pred cceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCC--cEEEEEEc
Q 009954 454 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYY 509 (521)
Q Consensus 454 G~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~g--r~l~v~~~ 509 (521)
|.|..|.|+++..++.. .|+|||+|.+.++|.+|++.|||..|+| ++|+|.|+
T Consensus 114 G~i~~~~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 114 GSIVQKNILRDKLTGRP---RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp SCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CcEEEEEEEEcCCCCCc---ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999998766553 6899999999999999999999999988 99999985
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=1.5e-29 Score=223.22 Aligned_cols=164 Identities=27% Similarity=0.423 Sum_probs=138.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||..+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999975
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccc
Q 009954 374 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 453 (521)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~f 453 (521)
.... .....+.+.++.... ++++|+++|++|
T Consensus 82 ~~~~---------------------------------------~~~~~l~v~nl~~~~----------t~~~l~~~f~~~ 112 (167)
T 1fxl_A 82 SSAS---------------------------------------IRDANLYVSGLPKTM----------TQKELEQLFSQY 112 (167)
T ss_dssp CCGG---------------------------------------GTTCEEEEESCCTTC----------CHHHHHHHHGGG
T ss_pred Cccc---------------------------------------CCCCcEEECCCCCcC----------CHHHHHHHHHhc
Confidence 3210 111223333332211 125999999999
Q ss_pred cceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcE--EEEEEc
Q 009954 454 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNT--VNAFYY 509 (521)
Q Consensus 454 G~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~--l~v~~~ 509 (521)
|.|..|.|+.+..++.. .|+|||+|.+.++|.+|++.|||..|+|+. |+|.|+
T Consensus 113 G~i~~~~i~~~~~~g~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 113 GRIITSRILVDQVTGVS---RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp SCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCEeEEEEEecCCCCCc---cceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999988766543 689999999999999999999999999975 888875
No 15
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-29 Score=221.27 Aligned_cols=166 Identities=18% Similarity=0.284 Sum_probs=140.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
++|||+|||.++++++|.++|++||.|.+|.|+.++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999986 5889999999999999999999999999999999999999653
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcccc
Q 009954 375 GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYG 454 (521)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG 454 (521)
... ...+...+.+.|+.... ++++|+++|+.||
T Consensus 80 ~~~-------------------------------------~~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~G 112 (166)
T 3md3_A 80 QQS-------------------------------------SSDDTFNLFVGDLNVNV----------DDETLRNAFKDFP 112 (166)
T ss_dssp CCC-------------------------------------CCTTCEEEEEESCCTTC----------CHHHHHHHHTTST
T ss_pred CCC-------------------------------------CCCCCceEEECCCCCCC----------CHHHHHHHHhccC
Confidence 221 01233344444432221 1259999999999
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCC
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~ 511 (521)
.|..|.|+.+..++.. +|+|||+|.+.++|.+|+..|||..|+|+.|+|.|+.+
T Consensus 113 ~i~~~~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 113 SYLSGHVMWDMQTGSS---RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TEEEEEEEECTTTCCE---EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CeeEEEEEecCCCCCc---ceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999988766553 68999999999999999999999999999999999863
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3.5e-29 Score=230.76 Aligned_cols=179 Identities=20% Similarity=0.353 Sum_probs=143.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||.++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccc
Q 009954 374 SGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKY 453 (521)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~f 453 (521)
.....+...... . .. .....+.+.++.... ++++|+++|+.|
T Consensus 108 ~~~~~~~~~~~~----------~--~~----------------~~~~~l~v~nlp~~~----------t~~~l~~~f~~~ 149 (216)
T 2qfj_A 108 IGQAQPIIDQLA----------E--EA----------------RAFNRIYVASVHQDL----------SDDDIKSVFEAF 149 (216)
T ss_dssp CGGGHHHHHHHH----------H--HH----------------TTSCEEEEECCCTTC----------CHHHHHHHHTTS
T ss_pred ccccchhhhhhh----------c--cc----------------CCCcEEEEeCCCCcC----------CHHHHHHHHhcc
Confidence 433222111100 0 00 222333344332211 125999999999
Q ss_pred cceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 454 GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 454 G~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
|.|..|.|+.+..++.. +|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+....
T Consensus 150 G~v~~v~i~~~~~~g~~---~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 150 GKIKSATLARDPTTGKH---KGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp SCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred CCeeEEEEEecCCCCCc---CceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 99999999998766554 6899999999999999999999999999999999987654
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=7.3e-31 Score=231.73 Aligned_cols=165 Identities=20% Similarity=0.443 Sum_probs=139.0
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~ 252 (521)
++++|||+|||+++|+++|+++|++||.|..+.+ +.+..++.++|||||+|.+.++|..|+. ++..+.|+.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI------MKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEEC------CCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE------EECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcc
Confidence 4679999999999999999999999997432111 1111234568999999999999999996 46789999999
Q ss_pred EeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 009954 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (521)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~ 332 (521)
|.++...... ....+|||+|||..+++++|.++|++||.|..|.|+.++.+
T Consensus 75 v~~~~~~~~~-----------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~ 125 (167)
T 2cjk_A 75 PKRAIPRDEQ-----------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT 125 (167)
T ss_dssp CEECCCHHHH-----------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS
T ss_pred cccccchhhc-----------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC
Confidence 8875432110 12358999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 333 g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
|.++|||||+|.+.++|.+|++ |+|..|+|+.|.|.|+.++
T Consensus 126 g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 126 GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp STTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999998 8999999999999999763
No 18
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=5.8e-29 Score=225.59 Aligned_cols=175 Identities=19% Similarity=0.299 Sum_probs=138.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3446899999999999999999999999999999999998999999999999999999999985 999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhc
Q 009954 372 TASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
......... . ...+...+.+.|+.... ++++|+++|+
T Consensus 90 ~~~~~~~~~--------------------------------~-~~~~~~~l~V~nLp~~~----------t~~~l~~~F~ 126 (196)
T 1l3k_A 90 VSREDSQRP--------------------------------G-AHLTVKKIFVGGIKEDT----------EEHHLRDYFE 126 (196)
T ss_dssp CC--------------------------------------------CCSEEEEECCTTTC----------CHHHHHHHHT
T ss_pred cCccccccc--------------------------------c-cCCCcceEEEeCCCCCC----------CHHHHHHHHh
Confidence 653211100 0 00222333334332111 1259999999
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
.||.|..|.|+.+..++.. +|+|||+|.+.++|.+||.. +|..|+|+.|.|.|+....-
T Consensus 127 ~~G~i~~v~i~~~~~~g~~---~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 127 QYGKIEVIEIMTDRGSGKK---RGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp TTSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred cCCCeEEEEEeecCCCCCc---cceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 9999999999998766553 68999999999999999986 89999999999999876543
No 19
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=6.5e-29 Score=220.94 Aligned_cols=165 Identities=21% Similarity=0.325 Sum_probs=135.0
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec--CCCCeEEEEecCHHHHHHHH-HccCceec--
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTVEEASNAM-ALDGIIFE-- 247 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~a~~A~-~l~g~~~~-- 247 (521)
+.++|||+|||+++|+++|+++|.+||.|..+. .+.+...+ .++|||||+|.+.++|.+|+ .|++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEIN------VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 357899999999999999999999999843211 01111111 56799999999999999999 69998876
Q ss_pred -CceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 009954 248 -GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (521)
Q Consensus 248 -g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i 326 (521)
++.+.+.++...... ....++|||+|||..+++++|+++|++||.|..|.+
T Consensus 76 ~~~~~~~~~~~~~~~~----------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 76 MHHPIQMKPADSEKNN----------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp CSSCCEEEECGGGCCS----------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CccceEEccccccccc----------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 577777764322110 122368999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC---CeEEEEEEcc
Q 009954 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTLTVRRAT 372 (521)
Q Consensus 327 ~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~l~v~~~~ 372 (521)
+.++ +|.++|||||+|.+.++|.+|++.|||..+. |++|.|.||.
T Consensus 128 ~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9985 6999999999999999999999999998775 4999999983
No 20
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.7e-28 Score=222.50 Aligned_cols=184 Identities=15% Similarity=0.126 Sum_probs=137.9
Q ss_pred CCeEEEeCCC-ccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 174 ARRVYVGGLP-PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 174 ~~~l~v~nlp-~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~-~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
.++|||+||| ..+|+++|+++|++||. |.++.+.. .+|||||+|.+.++|..|+ .|||..+.|++
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~------------v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGN------------VEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSC------------EEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCC------------eEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 5789999999 79999999999999998 66666654 5799999999999999999 69999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCC-cccccc---cCC----CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCe-
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPN-LNLAAV---GLA----SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL- 321 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~----~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i- 321 (521)
|.|.++................... ...... ... ........+..+|||+|||..+++++|+++|++||.|
T Consensus 72 l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~ 151 (205)
T 3tyt_A 72 MNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKR 151 (205)
T ss_dssp CEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred EEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcc
Confidence 9999876433211000000000000 000000 000 0001112345789999999999999999999999999
Q ss_pred -eEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCe----EEEEEEc
Q 009954 322 -HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK----TLTVRRA 371 (521)
Q Consensus 322 -~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~----~l~v~~~ 371 (521)
..|+++.+. +.++|+|||+|.+.++|.+||..|||..|.|. ++.|.++
T Consensus 152 ~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 152 PTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred eEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 899998874 56679999999999999999999999999886 5666654
No 21
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=7.3e-29 Score=218.82 Aligned_cols=163 Identities=21% Similarity=0.347 Sum_probs=138.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++. +..+.|+.|.|.++.+.
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccch
Confidence 6899999999999999999999999999999999988999999999999999999999984 68999999999998641
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhcccc
Q 009954 375 GQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYG 454 (521)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG 454 (521)
... .. .....|-+|+..++. ++|+++|+.||
T Consensus 82 ----~~~----------------~~----------------~~~l~V~nlp~~~t~-------------~~l~~~F~~~G 112 (167)
T 2cjk_A 82 ----DEQ----------------DK----------------TGKIFVGGIGPDVRP-------------KEFEEFFSQWG 112 (167)
T ss_dssp ----HHH----------------HH----------------CEEEEEEEECTTCCH-------------HHHHHHHHTTS
T ss_pred ----hhc----------------cC----------------CCeEEECCCCCCCCH-------------HHHHHHHHhCc
Confidence 000 00 023334444444433 49999999999
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
.|..|.|+.+..++.. +|+|||+|.+.++|.+|++ |+|..|+|+.|+|.|+.+.
T Consensus 113 ~i~~~~i~~~~~~g~~---~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 113 TIIDAQLMLDKDTGQS---RGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CCSEEECCCSSSSSTT---SEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred cEEEEEEEEcCCCCcc---ceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999998766654 6889999999999999998 8999999999999998764
No 22
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=2.1e-27 Score=220.39 Aligned_cols=185 Identities=19% Similarity=0.205 Sum_probs=142.2
Q ss_pred ccCCeEEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 172 RHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
...++|||+|||+ .+|+++|+++|++||. |..+.+... +|||||+|.+.++|.+|+ .|+|..|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~------------i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTC------------EEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4568999999999 9999999999999997 667766555 699999999999999999 599999999
Q ss_pred ceEEEeCCCCCCccccccCCCCCCCC------CcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-Ce
Q 009954 249 VAVRVRRPTDYNPTLAAALGPGQPSP------NLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-TL 321 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G-~i 321 (521)
+.|.|.++.................. ..................+.++|||+|||..+++++|+++|++|| .|
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 99999987654322111000000000 000000000000011233467899999999999999999999999 99
Q ss_pred eEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC-CeEEEEEEccC
Q 009954 322 HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATA 373 (521)
Q Consensus 322 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~~ 373 (521)
..|.|+.. .+|||||+|.+.++|.+|++.|+|..|. |+.|.|.|+.+
T Consensus 180 ~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 180 KGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred eEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99999653 2689999999999999999999999999 99999999975
No 23
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=6.5e-28 Score=228.40 Aligned_cols=155 Identities=23% Similarity=0.366 Sum_probs=141.1
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....++|||+|||+++|+++|+++|..||. |..+.+..++|||||+|.+.++|..|+ .|+|..|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGE------------PSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 345678999999999999999999999987 667777889999999999999999999 5999999999
Q ss_pred eEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 009954 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (521)
Q Consensus 250 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 329 (521)
.|.|.++.. ..+|||+|||..+++++|.++|+.||.|..|.|+.+
T Consensus 87 ~l~v~~a~~-----------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 87 PLRIRFATH-----------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp ECEEEECCC-----------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred eeEeeeccc-----------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence 999997531 258999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHHc-CCeeC---CeEEEEEEccC
Q 009954 330 RDTGNSKGYGFCVYQDPAVTDIACAALN-GLKMG---DKTLTVRRATA 373 (521)
Q Consensus 330 ~~~g~~~g~afV~f~~~~~A~~Al~~l~-g~~~~---g~~l~v~~~~~ 373 (521)
.+|.++|||||+|.+.++|.+|+..|+ |..+. +++|.|.++..
T Consensus 132 -~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 132 -DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp -TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred -CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 599999999999999999999999995 55554 99999999976
No 24
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=8.5e-28 Score=213.69 Aligned_cols=164 Identities=20% Similarity=0.306 Sum_probs=134.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC--CcceEEEEEEcChHHHHHHHHHHcCCeeC---CeEEEEE
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG--NSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTLTVR 369 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g--~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~l~v~ 369 (521)
++|||+|||..+++++|+++|++||.|..|.|+.++.+| .++|||||+|.+.++|.+|++.|+|..+. ++.+.+.
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~ 83 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK 83 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEc
Confidence 689999999999999999999999999999999998776 89999999999999999999999998775 6888888
Q ss_pred EccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHh
Q 009954 370 RATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREE 449 (521)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~ 449 (521)
++....... .....+.+.++.... ++++|+++
T Consensus 84 ~~~~~~~~~--------------------------------------~~~~~l~v~nl~~~~----------t~~~l~~~ 115 (175)
T 3nmr_A 84 PADSEKNNA--------------------------------------VEDRKLFIGMISKKC----------TENDIRVM 115 (175)
T ss_dssp ECGGGCCSC--------------------------------------GGGSEEEEESCCTTC----------CHHHHHHH
T ss_pred ccccccccc--------------------------------------CCCCeEEEcCCCCcC----------CHHHHHHH
Confidence 876422110 122233333332111 12599999
Q ss_pred hccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeC---CcEEEEEEcC
Q 009954 450 CGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG---GNTVNAFYYP 510 (521)
Q Consensus 450 f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~---gr~l~v~~~~ 510 (521)
|++||.|..|.|+++. ++. .+|+|||+|.+.++|.+|++.|||..+. |++|+|.|++
T Consensus 116 F~~~G~i~~v~~~~~~-~g~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 116 FSSFGQIEECRILRGP-DGL---SRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HGGGSCEEEEEEEECT-TSC---EEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhCCCEEEEEEEECC-CCC---EEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999999885 443 3688999999999999999999998776 4999999975
No 25
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=3.2e-27 Score=226.79 Aligned_cols=187 Identities=22% Similarity=0.364 Sum_probs=140.9
Q ss_pred hccCCeEEEeCCCccCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII 245 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~ 245 (521)
....++|||+|||..+|+++|+ ++|..||.|.. |.....+.++|||||+|.+.++|.+|+ .|||..
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~---------v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD---------ILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP 76 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE---------EEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCe
Confidence 3457899999999999999976 89999998432 222235668899999999999999999 799999
Q ss_pred ecCceEEEeCCCCCCccccccCCCC-------------------------------------------------------
Q 009954 246 FEGVAVRVRRPTDYNPTLAAALGPG------------------------------------------------------- 270 (521)
Q Consensus 246 ~~g~~i~v~~~~~~~~~~~~~~~~~------------------------------------------------------- 270 (521)
|.|+.|+|.++...........+..
T Consensus 77 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 3pgw_A 77 FYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH 156 (282)
T ss_pred eCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence 9999999998765442100000000
Q ss_pred -------CCCCCcccccccCCCC---------------------CCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee
Q 009954 271 -------QPSPNLNLAAVGLASG---------------------AIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322 (521)
Q Consensus 271 -------~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~ 322 (521)
.+.+.. ....+..+. ........++|||+|||..+++++|+++|++||.|.
T Consensus 157 ~~g~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~ 235 (282)
T 3pgw_A 157 MPGQPPYMPPPGM-IPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 235 (282)
T ss_pred CCCCCCCCCCCCC-CCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE
Confidence 000000 000000000 001223457899999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC-CeEEEEEEcc
Q 009954 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRAT 372 (521)
Q Consensus 323 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~ 372 (521)
.|.|+.+. +|||||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 236 ~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 236 EVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99998763 589999999999999999999999999 9999999985
No 26
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=2.1e-27 Score=229.36 Aligned_cols=172 Identities=15% Similarity=0.320 Sum_probs=139.1
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
..++|||+|||+.+|+++|+++|..|| .|..+.+ +.+ ..+.++|||||+|.+.++|.+|+ .|+|..+.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i------~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 188 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRL------PSL-RFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT 188 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEEC------C--------CCEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEE------EeC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 578999999999999999999999999 7543211 111 12557899999999999999999 59999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeec
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKD 329 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~ 329 (521)
|.|.++......... .......++|||+|||.. +++++|+++|++||.|..|.|+.+
T Consensus 189 l~v~~a~~~~~~~~~----------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~ 246 (292)
T 2ghp_A 189 LVTKVSNPLEKSKRT----------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG 246 (292)
T ss_dssp CEEEECCCC-------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC
T ss_pred EEEEECCCCcccccc----------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec
Confidence 999986543321110 011234578999999999 999999999999999999999998
Q ss_pred CC-CCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 330 RD-TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 330 ~~-~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
.. ||.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 247 ~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 247 QKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 75 5999999999999999999999 99999999999999999763
No 27
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.4e-27 Score=229.64 Aligned_cols=172 Identities=18% Similarity=0.179 Sum_probs=144.2
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||+.+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|..|+ .|+|..+.|+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 166 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCF------LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 166 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEE------EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3467899999999999999999999999843210 0111123446789999999999999999 79999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEeec
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYF-TETQIKELLESFGTLHGFDLVKD 329 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~-te~~l~~~F~~~G~i~~v~i~~~ 329 (521)
|.|.++...... ......++|||+|||..+ ++++|+++|+.||.|..|.|+.+
T Consensus 167 i~v~~a~~~~~~--------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 167 LYVHWTDAGQLT--------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CEEEECCGGGCC--------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred EEEEECCCCCCC--------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 999986532211 011334689999999995 99999999999999999999998
Q ss_pred CCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCC
Q 009954 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQ 376 (521)
Q Consensus 330 ~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 376 (521)
. +|.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.++..
T Consensus 221 ~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 221 Q-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp S-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred C-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 6 899999999999999999999999999999999999999987544
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=4.2e-27 Score=208.59 Aligned_cols=158 Identities=19% Similarity=0.325 Sum_probs=130.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (521)
.++|||+|||..+++++|+++|++| | .|..+.+.. ++|||||+|.+.++|.+|+ .|+|..|.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 3689999999999999999999999 6 677776643 4799999999999999999 79999999
Q ss_pred CeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHH
Q 009954 363 DKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEI 442 (521)
Q Consensus 363 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 442 (521)
|+.|.|.++........ .....|-+|+..++.
T Consensus 77 g~~i~v~~~~~~~~~~~------------------------------------~~~l~v~nlp~~~t~------------ 108 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLPG------------------------------------AHKLFIGGLPNYLND------------ 108 (172)
T ss_dssp TEECEEECCSSCCCCTT------------------------------------TTCEEEECCCTTCCH------------
T ss_pred CceeeecCCcccCCCCC------------------------------------CCEEEEEcCCCcCCH------------
Confidence 99999999865321100 122333333333332
Q ss_pred HHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcC
Q 009954 443 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 510 (521)
Q Consensus 443 ~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~ 510 (521)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|.+|++.|||..|+|++|.|.|++
T Consensus 109 -~~l~~~f~~~G~v~~v~i~~~~~~g~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 109 -DQVKELLTSFGPLKAFNLVKDSATGLS---KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp -HHHHHHHHTTSCEEEEEEEECTTTCSE---EEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred -HHHHHHHHhcCCceEEEEEecCCCCCc---ceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 599999999999999999998766553 6889999999999999999999999999999999974
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.8e-27 Score=214.82 Aligned_cols=182 Identities=19% Similarity=0.212 Sum_probs=139.8
Q ss_pred CCeEEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 174 ARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 174 ~~~l~v~nlp~-~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~-~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
.++|||+|||+ .+|+++|+++|..||. |..+.+... +|||||+|.+.++|.+|+ .|+|..+.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCC------------CSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 57899999999 9999999999999987 555555444 699999999999999999 59999999999
Q ss_pred EEEeCCCCCCccccccCCCCCCCCCccccc-------ccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-Cee
Q 009954 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAA-------VGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-TLH 322 (521)
Q Consensus 251 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G-~i~ 322 (521)
|.|.++................ ....... ............+.++|||+|||..+++++|+++|++|| .|.
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~ 149 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQG-LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 149 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSS-CEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCC
T ss_pred EEEEEecCCCcCCCCcCCcccc-ccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCce
Confidence 9999876543221110000000 0000000 000000111223467899999999999999999999999 999
Q ss_pred EEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC-CeEEEEEEccC
Q 009954 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATA 373 (521)
Q Consensus 323 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~v~~~~~ 373 (521)
.|.|+.+. +|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|+.+
T Consensus 150 ~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 150 GFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 99997642 789999999999999999999999999 99999999975
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2.4e-26 Score=220.74 Aligned_cols=198 Identities=15% Similarity=0.235 Sum_probs=138.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
...++|||+|||..+++++|+ ++|++||.|..|.|.+ +|.++|||||+|.+.++|.+||+.|||..|.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 445799999999999999966 9999999999999876 688999999999999999999999999999999999
Q ss_pred EEEccCCCCCchHHHHH-----------HHHHHHHHHHHHHhhhccCC----CCCCC-----------------------
Q 009954 368 VRRATASGQSKTEQESI-----------LAQAQQHIAIQKMALQTSGM----NTLGG----------------------- 409 (521)
Q Consensus 368 v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~----~~~~~----------------------- 409 (521)
|.|+............. .................... ..++.
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 99997633211100000 00000000000000000000 00000
Q ss_pred ------------CC----------------------CCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccc
Q 009954 410 ------------GM----------------------SLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGT 455 (521)
Q Consensus 410 ------------~~----------------------~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~ 455 (521)
.. ......+..++.+.|+.. ..++++|+++|+.||.
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~----------~~~~~~l~~~F~~~G~ 233 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPE----------ETNELMLSMLFNQFPG 233 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCC----------cCCHHHHHHHHHhcCC
Confidence 00 000111234444444422 2234699999999999
Q ss_pred eeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeC-CcEEEEEEcC
Q 009954 456 LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYP 510 (521)
Q Consensus 456 I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~-gr~l~v~~~~ 510 (521)
|..|.|+.+. .|+|||+|.+.++|.+||+.|||..|+ |+.|+|.|+.
T Consensus 234 i~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 234 FKEVRLVPGR--------HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred eEEEEEecCC--------CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999998754 378899999999999999999999999 9999999974
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=4.3e-27 Score=209.14 Aligned_cols=164 Identities=18% Similarity=0.290 Sum_probs=130.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|+.||.|..+ ++.+..+|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 445789999999999999999999999987663 33444588899999999999999999995 9999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhc
Q 009954 372 TASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
....... ..+...+.+.|+.... ++++|+++|+
T Consensus 89 ~~~~~~~-------------------------------------~~~~~~l~v~nlp~~~----------t~~~l~~~F~ 121 (175)
T 1fje_B 89 KGRDSKK-------------------------------------VRAARTLLAKNLSFNI----------TEDELKEVFE 121 (175)
T ss_dssp CCSSCST-------------------------------------TGGGGEEEEESCCSSC----------CHHHHHHHCT
T ss_pred CCccccc-------------------------------------cccCCEEEEeCCCCCC----------CHHHHHHHHH
Confidence 7632210 0223334444432211 1259999999
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
.||.|..+ ..++. .+|+|||+|.+.++|.+|+..|||..|+|+.|+|.|+.+.
T Consensus 122 ~~g~v~~~-----~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 122 DALEIRLV-----SQDGK---SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp TCSEEEEE-----CSSSS---CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred hcCeEEEe-----cCCCC---CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999877 22333 3588899999999999999999999999999999998764
No 32
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=3.8e-26 Score=207.35 Aligned_cols=181 Identities=18% Similarity=0.265 Sum_probs=135.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (521)
.++|||+|||..+++++|+++|++| | .|..+.+ +.++|||||+|.+.++|.+|| .|||..|.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 4799999999999999999999999 4 5555554 445899999999999999999 79999999
Q ss_pred CeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHH
Q 009954 363 DKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEI 442 (521)
Q Consensus 363 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~ 442 (521)
|+.|.|.++......... ........++. .+.....+...+.+.++.... +
T Consensus 77 g~~i~v~~~~~~~~~~~~------------------~~~~~~~~~~~-~~~~~~~~~~~l~v~nl~~~~----------~ 127 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGM------------------SENPSVYVPGV-VSTVVPDSAHKLFIGGLPNYL----------N 127 (198)
T ss_dssp TEEEEEECCCCCCCCCCS------------------SSCSSCCCTTS-SCCCSSCCCCEEEEECCCTTC----------C
T ss_pred CceEEEeCCCCCCCCCCC------------------cCCCcCCCCCC-ccCCCCCCCCEEEEeCCCCCC----------C
Confidence 999999998764322111 00000011111 111112333344444443211 1
Q ss_pred HHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 443 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 443 ~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
+++|+++|++||.|..|.|+.+..++.. .|+|||+|.+.++|.+|++.|||..|+|+.|+|.|+....
T Consensus 128 ~~~l~~~f~~~G~v~~~~~~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 128 DDQVKELLTSFGPLKAFNLVKDSATGLS---KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHHHTBSCEEEEEEEECTTTCSE---EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHHHHcCCccEEEEeecCCCCCc---ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 2599999999999999999998756543 6899999999999999999999999999999999987653
No 33
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=4.6e-26 Score=206.50 Aligned_cols=181 Identities=13% Similarity=0.118 Sum_probs=125.9
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 294 PDRVFVGGLP-YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 294 ~~~l~v~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
.++|||+||| ..+++++|+++|++||.|.+|+|+.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|.|+.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3689999999 79999999999999999999999875 37999999999999999999999999999999999997
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCC------CCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHH
Q 009954 373 ASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLG------GGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDM 446 (521)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl 446 (521)
.....+......... .+..........+... ......+.....|.+|+..++. ++|
T Consensus 79 ~~~~~p~~~~~~~~~-----~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~-------------~~L 140 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDG-----SCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTE-------------ENF 140 (205)
T ss_dssp CSCCCCCSCCBCTTS-----CBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCH-------------HHH
T ss_pred CCccCCCcccccccC-----CccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCH-------------HHH
Confidence 532110000000000 0000000000000000 0000001122333334433333 599
Q ss_pred HHhhccccce--eEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCc
Q 009954 447 REECGKYGTL--VNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGN 502 (521)
Q Consensus 447 ~~~f~~fG~I--~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr 502 (521)
+++|++||.| ..|.|+.+. +. ..|+|||+|.+.++|.+||..|||..|+|.
T Consensus 141 ~~~F~~~G~v~~~~v~~~~~~--~~---~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 141 FEICDELGVKRPTSVKVFSGK--SE---RSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp HHHHHHHTCCCCSEEEECSCC--SS---SSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred HHHHHhcCCcceEEEEEEcCC--CC---CceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 9999999999 899998875 22 238889999999999999999999999998
No 34
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=6e-26 Score=210.59 Aligned_cols=193 Identities=12% Similarity=0.116 Sum_probs=137.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 292 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 292 ~~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
...++|||+|||. .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+|++.|+|..|.|+.|.|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4457999999999 99999999999999999999999874 78999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHhhh-ccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHh
Q 009954 371 ATASGQSKTEQESILAQAQQHIAIQKMALQ-TSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREE 449 (521)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~ 449 (521)
+.......+........ ........ ......++.........+..++.+.|+.... ++++|+++
T Consensus 107 a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~----------t~~~l~~~ 171 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQG-----LTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----------SEEDLKVL 171 (229)
T ss_dssp CSCCCCCCCCSSSSTTT-----TEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTC----------CHHHHHHH
T ss_pred ecCccccCccccccccc-----cccccccCcccccCCccccccccCCCCCCEEEEeCCCccC----------CHHHHHHH
Confidence 97632111100000000 00000000 0000000000000111233444455443221 12699999
Q ss_pred hcccc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeC-CcEEEEEEcCCC
Q 009954 450 CGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYPED 512 (521)
Q Consensus 450 f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~-gr~l~v~~~~~~ 512 (521)
|+.|| .|..|.|.... .|+|||+|.+.++|.+|+..|||..|+ |+.|+|.|+...
T Consensus 172 f~~~G~~i~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 172 FSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHTTSCCEEEEEECSSS--------TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHcCCCeeEEEEEECC--------CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999 99999996632 378899999999999999999999999 999999998754
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=1.3e-25 Score=203.76 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=136.4
Q ss_pred CeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 295 DRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 295 ~~l~v~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
++|||+|||. .+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+..
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 6899999999 99999999999999999999998874 78999999999999999999999999999999999976
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHH
Q 009954 374 SGQSKTEQESILAQAQQHIAIQKMALQTS-----GMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMRE 448 (521)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~ 448 (521)
.....+...... ........ ....++.........+..++.+.|+.... ++++|++
T Consensus 79 ~~~~~~~~~~~~---------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~ 139 (198)
T 1qm9_A 79 QNVQLPREGQED---------QGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----------SEEDLKV 139 (198)
T ss_dssp CSCCCSSSSSSS---------SSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTC----------CHHHHHH
T ss_pred CCcCCCCcCCcc---------ccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCC----------CHHHHHH
Confidence 322111000000 00000000 00001110011111234455555543221 2269999
Q ss_pred hhcccc-ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeC-CcEEEEEEcCCC
Q 009954 449 ECGKYG-TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFG-GNTVNAFYYPED 512 (521)
Q Consensus 449 ~f~~fG-~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~-gr~l~v~~~~~~ 512 (521)
+|+.|| .|..|.|.++. .|+|||+|.+.++|.+|+..|||..|+ |+.|+|.|+...
T Consensus 140 ~f~~~G~~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 140 LFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHTTSCCCEEEESSTT--------SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHcCCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999 99999997643 378899999999999999999999999 999999998753
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=4.4e-25 Score=208.93 Aligned_cols=157 Identities=25% Similarity=0.359 Sum_probs=131.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||.++|+++|.++|++||.|..|.|.++ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34468999999999999999999999999999998654 789999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhc
Q 009954 372 TASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECG 451 (521)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~ 451 (521)
.+ .....|-+|+..++. ++|+++|+
T Consensus 94 ~~------------------------------------------~~~l~v~nl~~~~t~-------------~~l~~~F~ 118 (261)
T 3sde_A 94 TH------------------------------------------GAALTVKNLSPVVSN-------------ELLEQAFS 118 (261)
T ss_dssp CC------------------------------------------SSEEEEESCCTTCCH-------------HHHHHHHG
T ss_pred cc------------------------------------------CCcccccCCCCCCCH-------------HHHHHHHH
Confidence 53 022222233333222 59999999
Q ss_pred cccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHH-hCCeeC---CcEEEEEEcCCCC
Q 009954 452 KYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNAL-SGRKFG---GNTVNAFYYPEDK 513 (521)
Q Consensus 452 ~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~l-ng~~~~---gr~l~v~~~~~~~ 513 (521)
.||.|..|.|+.+. +|.. .|+|||+|.+.++|.+||..| +|..+. |++|.|.++...+
T Consensus 119 ~~G~i~~v~i~~~~-~g~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 119 QFGPVEKAVVVVDD-RGRA---TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp GGSCEEEEEEEEET-TSCE---EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred hcCCeEEEEeeeCC-CCCc---CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99999999999984 5543 688999999999999999999 566665 9999999987653
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=7e-22 Score=172.05 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=107.1
Q ss_pred ecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCe
Q 009954 218 INHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDR 296 (521)
Q Consensus 218 ~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (521)
....+|||||+|.+.++|++|+ .+++.......+.+.......... .. .............++
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~~~~~~~~~~~~ 72 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT---EG-------------SHHHHHHMDVEGMTS 72 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE---CC-------------CCCSSCCCCCCBCCE
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc---cc-------------ccccccccCCCCCCE
Confidence 3457899999999999999999 566543322222222111000000 00 000001112234578
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCC
Q 009954 297 VFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASG 375 (521)
Q Consensus 297 l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (521)
|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|+.+..
T Consensus 73 l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 73 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999999999999999998899999999999999999999999999999999999999998743
No 38
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.87 E-value=4.7e-22 Score=158.92 Aligned_cols=102 Identities=42% Similarity=0.821 Sum_probs=95.0
Q ss_pred CcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhC
Q 009954 417 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 496 (521)
Q Consensus 417 ~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng 496 (521)
.+++|++|.|+++++++.++.+|++|++||+++|++||+|.+|.|+++..++. ..++|+|||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999999999874322 24578999999999999999999999
Q ss_pred CeeCCcEEEEEEcCCCCcccccC
Q 009954 497 RKFGGNTVNAFYYPEDKYFNKDY 519 (521)
Q Consensus 497 ~~~~gr~l~v~~~~~~~~~~~~~ 519 (521)
+.|+||+|+|.|+++++|..++|
T Consensus 82 ~~f~GR~i~v~~~~~~~f~~~~~ 104 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSYHRRDF 104 (105)
T ss_dssp CEETTEECEEEEECHHHHHTTCC
T ss_pred CEeCCCEEEEEEeCHHHHhhccC
Confidence 99999999999999999999987
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=148.55 Aligned_cols=80 Identities=31% Similarity=0.542 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||.++|+++|+++|++||.|..|+|++++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999965
No 40
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1.8e-20 Score=161.34 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=109.8
Q ss_pred CCCCeEEEEecCHHHHHHHH-Hc-cCceecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeE
Q 009954 220 HEKKFAFVEMRTVEEASNAM-AL-DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 297 (521)
Q Consensus 220 ~~~g~afV~f~~~~~a~~A~-~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (521)
.-+|+++|+|.+.++|++|+ ++ ||..+.| .+.+.++............. ............++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l 76 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH-------------HHHMHRDSCPLDCKV 76 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC-------------CCCSCSSSSTTSCEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc-------------cccccccCCCCCCEE
Confidence 45799999999999999999 78 9999999 99998765422111000000 000111223455799
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 298 ~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+.
T Consensus 77 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 77 YVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp EEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999999999999876 5899999999999999999999999999999999999763
No 41
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.80 E-value=3.8e-20 Score=150.51 Aligned_cols=100 Identities=30% Similarity=0.499 Sum_probs=88.1
Q ss_pred CcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCC-CCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 417 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNG-GETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 417 ~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~-~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
.+++|++|.|+++++++.+ +|++||+++|++||+|.+|.|+++..+. ...+++|+|||+|.+.++|.+|++.||
T Consensus 18 ~ps~vl~L~Nm~~~~el~d-----dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDD-----DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp HSCCEEEEESCSCGGGCCT-----THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHH-----HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence 5789999999999988764 3678999999999999999999986421 112456899999999999999999999
Q ss_pred CCeeCCcEEEEEEcCCCCcccccCCC
Q 009954 496 GRKFGGNTVNAFYYPEDKYFNKDYSA 521 (521)
Q Consensus 496 g~~~~gr~l~v~~~~~~~~~~~~~~~ 521 (521)
|+.|+||+|.|.|+++++|.+++|+.
T Consensus 93 Gr~f~GR~i~v~~~~~~~f~~~~~~~ 118 (118)
T 3ue2_A 93 GRWFAGRKVVAEVYDQERFDNSDLSA 118 (118)
T ss_dssp TCEETTEECEEEEECHHHHHTTCCCC
T ss_pred CCEECCcEEEEEEcChHhccccccCC
Confidence 99999999999999999999999983
No 42
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=143.71 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=6e-20 Score=143.20 Aligned_cols=82 Identities=20% Similarity=0.329 Sum_probs=76.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc-CCeeCCeEEEEEEcc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN-GLKMGDKTLTVRRAT 372 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~-g~~~~g~~l~v~~~~ 372 (521)
++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|++||+.|+ +..|+|+.|.|.|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 79999999999999999999999999999999999874 578999999999998
Q ss_pred CCCC
Q 009954 373 ASGQ 376 (521)
Q Consensus 373 ~~~~ 376 (521)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 44
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.79 E-value=1.8e-19 Score=145.34 Aligned_cols=94 Identities=26% Similarity=0.430 Sum_probs=87.5
Q ss_pred CCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 416 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 416 ~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
+.+++|++|.|+++.+++.++.+|++|++||+++|++||.|.+|.|+++. ++|+|||+|.+.++|.+|++.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999998864 24788999999999999999999
Q ss_pred CCeeCCcEEEEEEcCCCCccc
Q 009954 496 GRKFGGNTVNAFYYPEDKYFN 516 (521)
Q Consensus 496 g~~~~gr~l~v~~~~~~~~~~ 516 (521)
|+.|+||.|.|.|+++.+|..
T Consensus 77 G~~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 77 GRWFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp TCEETTEECEEEEECHHHHHH
T ss_pred CCEECCEEEEEEEEcHHHHHH
Confidence 999999999999999988864
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=139.86 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCC----eeCCeEE
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGT--LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL----KMGDKTL 366 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~----~~~g~~l 366 (521)
.-.+|||+|||+.+|+++|+++|++||. |.+|+|++|+.+|.++|||||+|.+.++|.+||+.|||. .|+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 679999999999999999999999999999999999996 5899999
Q ss_pred EEEEccC
Q 009954 367 TVRRATA 373 (521)
Q Consensus 367 ~v~~~~~ 373 (521)
.|.||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999964
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=9.6e-19 Score=142.98 Aligned_cols=80 Identities=23% Similarity=0.468 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||+.+++++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|++||+.|+|..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999984 55899999999999999999999999999999999999976
Q ss_pred CC
Q 009954 374 SG 375 (521)
Q Consensus 374 ~~ 375 (521)
..
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=134.68 Aligned_cols=81 Identities=31% Similarity=0.460 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
+
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.8e-18 Score=132.71 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=77.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
.+|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 48999999999999999999999999999999999889999999999999999999999999999999999999999764
No 49
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=135.38 Aligned_cols=84 Identities=33% Similarity=0.642 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8743
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=134.95 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34457899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 863
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=2.3e-18 Score=132.79 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred c
Q 009954 372 T 372 (521)
Q Consensus 372 ~ 372 (521)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=3.8e-18 Score=134.74 Aligned_cols=84 Identities=32% Similarity=0.538 Sum_probs=79.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|+|..|+|+.|.|.|+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 009954 374 SGQS 377 (521)
Q Consensus 374 ~~~~ 377 (521)
....
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 5443
No 53
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=137.63 Aligned_cols=86 Identities=29% Similarity=0.427 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34457899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009954 371 ATASGQ 376 (521)
Q Consensus 371 ~~~~~~ 376 (521)
+.+...
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=135.35 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 009954 371 AT 372 (521)
Q Consensus 371 ~~ 372 (521)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=137.46 Aligned_cols=86 Identities=28% Similarity=0.539 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 290 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
.....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCC
Q 009954 370 RATASG 375 (521)
Q Consensus 370 ~~~~~~ 375 (521)
|+.+..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 997743
No 56
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=138.09 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009954 371 ATASGQ 376 (521)
Q Consensus 371 ~~~~~~ 376 (521)
+.+...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987443
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=7.2e-18 Score=138.07 Aligned_cols=85 Identities=31% Similarity=0.448 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|+|..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 44578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009954 372 TASGQ 376 (521)
Q Consensus 372 ~~~~~ 376 (521)
.++..
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87443
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=5.2e-19 Score=137.84 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
.+|||+|||..+++++|+++|++|| .|.+|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 99999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 009954 373 ASG 375 (521)
Q Consensus 373 ~~~ 375 (521)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 643
No 59
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=135.66 Aligned_cols=84 Identities=26% Similarity=0.435 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8743
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=6e-18 Score=138.49 Aligned_cols=85 Identities=25% Similarity=0.481 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009954 372 TASGQ 376 (521)
Q Consensus 372 ~~~~~ 376 (521)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87443
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=137.37 Aligned_cols=83 Identities=20% Similarity=0.392 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
...
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 863
No 62
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=136.25 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeE----
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLH-GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT---- 365 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~---- 365 (521)
....++|||+|||..+++++|+++|++||.|. .|.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34567999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEEEccCC
Q 009954 366 LTVRRATAS 374 (521)
Q Consensus 366 l~v~~~~~~ 374 (521)
|+|.|+.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999999763
No 63
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=4.6e-18 Score=147.80 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=101.1
Q ss_pred EEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhcc
Q 009954 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTS 402 (521)
Q Consensus 323 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (521)
.++|+.+. ..++|||||+|.+.++|++|++.+++....+..+.+.........
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 54 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV------------------------- 54 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE-------------------------
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc-------------------------
Confidence 46677763 468999999999999999999998864333333333222110000
Q ss_pred CCCCCCCCCCCCCCCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEec
Q 009954 403 GMNTLGGGMSLFGETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYY 482 (521)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~ 482 (521)
..................+.+.|+.... ++++|+++|+.||.|..|.|+.+..++.. +|+|||+|.
T Consensus 55 -~~~~~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~F~~~G~v~~~~i~~~~~~g~~---~g~afV~f~ 120 (158)
T 2kn4_A 55 -TEGSHHHHHHMDVEGMTSLKVDNLTYRT----------SPDTLRRVFEKYGRVGDVYIPRDRYTKES---RGFAFVRFH 120 (158)
T ss_dssp -ECCCCCSSCCCCCCBCCEEEEESCCTTC----------CHHHHHHHHHHHSCEEEEECCCCSSCTTS---CCEEEEEES
T ss_pred -cccccccccccCCCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeecCCCCcc---ceEEEEEEC
Confidence 0000000001111223333333332211 12599999999999999999998766654 688899999
Q ss_pred CHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 483 DAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 483 ~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
+.++|+.||+.|||..|+|+.|+|.|+....
T Consensus 121 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 121 DKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp BHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999999999988754
No 64
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=5.8e-19 Score=148.43 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=80.1
Q ss_pred eEEEEecCHHHHHHHH-HccCceecCceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCC
Q 009954 224 FAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGL 302 (521)
Q Consensus 224 ~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL 302 (521)
++|++|.+...+..|| .++|....|+.- +.+. .+ .......++|||+||
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~--------------~~---------------~~~~~~~~~l~V~nL 55 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG--------------RP---------------PPDVEGMTSLKVDNL 55 (135)
T ss_dssp ------------------------------CCSC--------------CS---------------CSSGGGCCCEEEECC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcC--------------CC---------------CCCCCCCCEEEEeCC
Confidence 6788888888899999 677766554321 1110 00 011233468999999
Q ss_pred CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCC
Q 009954 303 PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASG 375 (521)
Q Consensus 303 p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 375 (521)
|..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|+|..|.|+.|.|.|+.+..
T Consensus 56 p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 56 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999998899999999999999999999999999999999999999998743
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=134.69 Aligned_cols=84 Identities=25% Similarity=0.535 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 445789999999999999999999999999999999998899999999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 009954 372 TASGQ 376 (521)
Q Consensus 372 ~~~~~ 376 (521)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87443
No 66
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=135.15 Aligned_cols=83 Identities=30% Similarity=0.521 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
..++|||+|||..+++++|.++|++||.|..| .|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8744
No 67
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.3e-18 Score=136.42 Aligned_cols=85 Identities=29% Similarity=0.444 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 009954 371 ATASG 375 (521)
Q Consensus 371 ~~~~~ 375 (521)
+.+..
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 97743
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=132.68 Aligned_cols=83 Identities=22% Similarity=0.534 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345789999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7643
No 69
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=136.37 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 34689999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred CCC
Q 009954 373 ASG 375 (521)
Q Consensus 373 ~~~ 375 (521)
++.
T Consensus 102 ~~~ 104 (106)
T 1p27_B 102 VRG 104 (106)
T ss_dssp ESS
T ss_pred CCC
Confidence 643
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=134.53 Aligned_cols=84 Identities=24% Similarity=0.447 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457899999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred EEccCCC
Q 009954 369 RRATASG 375 (521)
Q Consensus 369 ~~~~~~~ 375 (521)
.|+....
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998743
No 71
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=5.4e-18 Score=136.66 Aligned_cols=85 Identities=28% Similarity=0.465 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee---CCeEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTLT 367 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~~l~ 367 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34457899999999999999999999999999999999988999999999999999999999999999887 899999
Q ss_pred EEEccCCC
Q 009954 368 VRRATASG 375 (521)
Q Consensus 368 v~~~~~~~ 375 (521)
|.|+....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99997643
No 72
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=133.03 Aligned_cols=80 Identities=31% Similarity=0.553 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4457899999999999999999999999999999999974 999999999999999999999999999999999999998
Q ss_pred c
Q 009954 372 T 372 (521)
Q Consensus 372 ~ 372 (521)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=133.61 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHG--------FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (521)
...++|||+|||..+++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 44578999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 009954 364 KTLTVRRAT 372 (521)
Q Consensus 364 ~~l~v~~~~ 372 (521)
+.|.|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999984
No 74
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=7.5e-18 Score=147.27 Aligned_cols=141 Identities=21% Similarity=0.203 Sum_probs=79.7
Q ss_pred EEecCHHHHHHHH-HccCceec--CceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCC
Q 009954 227 VEMRTVEEASNAM-ALDGIIFE--GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLP 303 (521)
Q Consensus 227 V~f~~~~~a~~A~-~l~g~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp 303 (521)
.+|.+.++|..|+ .+++.... |+...+.+....... .. .+..+. ...............++|||+|||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~---~~---~~~~~s---~~~~~~~~~~~~~~~~~l~V~nLp 81 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH---SY---ERVRNE---DDDELEPGPQRSVEGWILFVTSIH 81 (165)
T ss_dssp ----------------------------------------------------------------CCCCC-CEEEEEESCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc---Cc---cccccC---CCCCCCCCCCCCCCCCEEEEeCCC
Confidence 7899999999999 67776554 555544432110000 00 000000 000000011112344689999999
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCCCC
Q 009954 304 YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQ 376 (521)
Q Consensus 304 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 376 (521)
..+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.....
T Consensus 82 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 82 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999988999999999999999999999999999999999999999987443
No 75
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=136.07 Aligned_cols=84 Identities=33% Similarity=0.693 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 009954 371 ATAS 374 (521)
Q Consensus 371 ~~~~ 374 (521)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9763
No 76
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.7e-18 Score=132.57 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
...++|||+|||..+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345689999999999999999 99999999999999998655 88999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 009954 368 VRRATASGQ 376 (521)
Q Consensus 368 v~~~~~~~~ 376 (521)
|.++.+...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999977443
No 77
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=135.81 Aligned_cols=86 Identities=28% Similarity=0.424 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc------CCeeCCe
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN------GLKMGDK 364 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~------g~~~~g~ 364 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|| |..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3455789999999999999999999999999999999999899999999999999999999999999 9999999
Q ss_pred EEEEEEccCCCC
Q 009954 365 TLTVRRATASGQ 376 (521)
Q Consensus 365 ~l~v~~~~~~~~ 376 (521)
.|.|.|+.++..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987443
No 78
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=1.3e-18 Score=138.36 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=76.8
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC-eEE
Q 009954 294 PDRVFVGGLPY------YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-KTL 366 (521)
Q Consensus 294 ~~~l~v~nLp~------~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-~~l 366 (521)
.++|||+|||. .+++++|+++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||+.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 36899999999 99999999999999999999999999899999999999999999999999999999999 999
Q ss_pred EEEEccC
Q 009954 367 TVRRATA 373 (521)
Q Consensus 367 ~v~~~~~ 373 (521)
.|.++.+
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9999964
No 79
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.7e-17 Score=134.01 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|.++|++||.|..|.|+.++ +|.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456789999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cc
Q 009954 371 AT 372 (521)
Q Consensus 371 ~~ 372 (521)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.5e-17 Score=133.18 Aligned_cols=83 Identities=25% Similarity=0.510 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++|| |..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34457899999999999999999999997 999999999989999999999999999999999 8999999999999999
Q ss_pred ccCCC
Q 009954 371 ATASG 375 (521)
Q Consensus 371 ~~~~~ 375 (521)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98743
No 81
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=1.2e-17 Score=135.59 Aligned_cols=83 Identities=29% Similarity=0.365 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CCC
Q 009954 373 ASG 375 (521)
Q Consensus 373 ~~~ 375 (521)
++.
T Consensus 105 ~~~ 107 (110)
T 1oo0_B 105 VKG 107 (110)
T ss_dssp ESS
T ss_pred cCC
Confidence 643
No 82
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=2.1e-17 Score=132.86 Aligned_cols=84 Identities=24% Similarity=0.393 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC---eEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD---KTLTV 368 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g---~~l~v 368 (521)
...++|||+|||..+++++|.++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345789999999999999999999999999999999997 89999999999999999999999999999988 99999
Q ss_pred EEccCCCC
Q 009954 369 RRATASGQ 376 (521)
Q Consensus 369 ~~~~~~~~ 376 (521)
.|+.....
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987543
No 83
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=134.26 Aligned_cols=84 Identities=24% Similarity=0.457 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcceEEEEEEcChHHHHHHHHHH-cCCeeCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD-RDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v~ 369 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.+ +.+|.++|||||+|.+.++|.+||+.| ||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 44578999999999999999999999999999999998 789999999999999999999999999 9999999999999
Q ss_pred EccCCC
Q 009954 370 RATASG 375 (521)
Q Consensus 370 ~~~~~~ 375 (521)
|+.+..
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998743
No 84
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=134.35 Aligned_cols=85 Identities=24% Similarity=0.531 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||.. +|..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999998 99999999999999
Q ss_pred ccCCCC
Q 009954 371 ATASGQ 376 (521)
Q Consensus 371 ~~~~~~ 376 (521)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987543
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=133.13 Aligned_cols=83 Identities=23% Similarity=0.412 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.+ +|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45678999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009954 372 TASGQ 376 (521)
Q Consensus 372 ~~~~~ 376 (521)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 87443
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.9e-17 Score=129.64 Aligned_cols=82 Identities=29% Similarity=0.581 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.+ +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44579999999999999999999999999999999985 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7743
No 87
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=2.5e-17 Score=127.52 Aligned_cols=79 Identities=24% Similarity=0.566 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 455799999999999999999999999999999999998899999999999999999999996 5888999999999986
No 88
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-17 Score=130.43 Aligned_cols=83 Identities=25% Similarity=0.386 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456799999999999999999999999999999999984 34689999999999999999999999999999999999
Q ss_pred ccCCC
Q 009954 371 ATASG 375 (521)
Q Consensus 371 ~~~~~ 375 (521)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98743
No 89
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=5.7e-18 Score=135.03 Aligned_cols=98 Identities=29% Similarity=0.451 Sum_probs=84.7
Q ss_pred CCcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 416 ETLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 416 ~~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
+.+++|++|.|+++++++.+ +++++|+++|++||.|.+|.|+.+..++. .++|+|||+|.+.++|.+|++.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~d-----d~~~dl~~~f~~~G~V~~v~i~~~~~~~~--~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDE-----DLEVETKEECEKYGKVGKCVIFEIPGAPD--DEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp GSCCSEEEEESSSCSCCC--------CHHHHHHHGGGGSCEEEEEEEECSSCCT--TTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCChHHhhH-----HHHHHHHHHHHhcCCEEEEEEecCCCCCC--CCcEEEEEEECCHHHHHHHHHHHC
Confidence 36888999999998876643 46789999999999999999998753321 236888999999999999999999
Q ss_pred CCeeCCcEEEEEEcCCCCcccccCC
Q 009954 496 GRKFGGNTVNAFYYPEDKYFNKDYS 520 (521)
Q Consensus 496 g~~~~gr~l~v~~~~~~~~~~~~~~ 520 (521)
|+.|+|+.|.|.|+++++|..++|+
T Consensus 78 G~~~~Gr~i~v~~a~~~~f~~~~~~ 102 (105)
T 2pe8_A 78 GRYFGGRVVKACFYNLDKFRVLDLA 102 (105)
T ss_dssp TCEETTEECEEEECCHHHHHTTCCC
T ss_pred CCEECCcEEEEEEcCHHHhhhhhcc
Confidence 9999999999999999999999986
No 90
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.8e-17 Score=128.93 Aligned_cols=78 Identities=17% Similarity=0.378 Sum_probs=75.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 68999999999999999999999999999999999889999999999999999999999 8999999999999999975
No 91
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=143.21 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
..++|||+|||..+++++|+++|+.|| .|..|+|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 964
No 92
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=8.4e-18 Score=139.99 Aligned_cols=84 Identities=20% Similarity=0.397 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|+|..|.|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 009954 371 ATAS 374 (521)
Q Consensus 371 ~~~~ 374 (521)
+.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9763
No 93
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.8e-17 Score=136.38 Aligned_cols=82 Identities=28% Similarity=0.501 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34557899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 009954 371 AT 372 (521)
Q Consensus 371 ~~ 372 (521)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 94
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=136.13 Aligned_cols=82 Identities=29% Similarity=0.571 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|++|++.|+|..|.|+.|.|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345799999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 763
No 95
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=129.22 Aligned_cols=80 Identities=24% Similarity=0.495 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC-cceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN-SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
.++|||+|||..+++++|.++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999999877666 89999999999999999999999999999999999996
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
+
T Consensus 84 ~ 84 (88)
T 4a8x_A 84 A 84 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 96
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=135.06 Aligned_cols=84 Identities=21% Similarity=0.371 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (521)
...++|||+|||..+++++|+++|++||.|. .|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4557999999999999999999999999999 69999998899999999999999999999999999999999
Q ss_pred eEEEEEEccCCC
Q 009954 364 KTLTVRRATASG 375 (521)
Q Consensus 364 ~~l~v~~~~~~~ 375 (521)
+.|.|.|+..+.
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999998743
No 97
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=5.2e-18 Score=133.81 Aligned_cols=81 Identities=16% Similarity=0.345 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34578999999999999999999999999999999988889999999999999999999999999999999999999988
Q ss_pred c
Q 009954 372 T 372 (521)
Q Consensus 372 ~ 372 (521)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 98
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-17 Score=130.05 Aligned_cols=84 Identities=25% Similarity=0.557 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567999999999999999999999999999999999853 4899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009954 371 ATASGQ 376 (521)
Q Consensus 371 ~~~~~~ 376 (521)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cq3_A 90 ATARVM 95 (103)
T ss_dssp CCSSCC
T ss_pred cccCCC
Confidence 987443
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=131.28 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcC--CeeCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v~ 369 (521)
...++|||+|||..+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 44579999999999999999999999999999999875 78999999999999999998864 78999999999
Q ss_pred EccCCC
Q 009954 370 RATASG 375 (521)
Q Consensus 370 ~~~~~~ 375 (521)
|+..+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 998743
No 100
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=2.1e-17 Score=123.73 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.|||..+.|++|.|.+|.
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 5699999999999999999999999999999865 58999999999999999999999999999999999994
No 101
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=135.18 Aligned_cols=82 Identities=33% Similarity=0.613 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++ .|.|+.|.|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4557899999999999999999999999999999999988999999999999999999999999998 899999999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
...
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 764
No 102
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=9.7e-18 Score=133.04 Aligned_cols=82 Identities=16% Similarity=0.329 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44578999999999999999999999999998888888889999999999999999999999999999999999999998
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 103
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.2e-17 Score=132.25 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3455789999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 975
No 104
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=133.27 Aligned_cols=83 Identities=27% Similarity=0.395 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCe-eCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLES-FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK-MGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~-~~g~~l~v~ 369 (521)
...++|||+|||..+++++|+++|++ ||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.|+|.. |.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34578999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred EccCCC
Q 009954 370 RATASG 375 (521)
Q Consensus 370 ~~~~~~ 375 (521)
|+.+..
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997643
No 105
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=132.80 Aligned_cols=82 Identities=28% Similarity=0.492 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC-CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
...++|||+|||..+++++|+++|++|| |..|.|+.++.+ |.++|||||+|.+.++|++|| .|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred ccCCC
Q 009954 371 ATASG 375 (521)
Q Consensus 371 ~~~~~ 375 (521)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98743
No 106
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=3.2e-18 Score=139.90 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=64.6
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe----cCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~----~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
..+|||+|||+.+|+++|+++|.+||.|. ++.+ +.++|||||+|.+.++|.+|+ .|+|..|.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~------------~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNIL------------SCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEE------------EEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEE------------EEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45799999999999999999999999843 3332 335799999999999999999 799999999
Q ss_pred ceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 009954 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~ 310 (521)
+.|.|.++......... ........++|||+|||+.+|++.
T Consensus 73 ~~i~V~~a~~~~~~~~~---------------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 73 RKVFVGRFKSRKEREAE---------------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EECEEEESSCCCC-------------------------------------------------
T ss_pred EEEEEEECCCccccccc---------------------cccccCCCCceEeCCCCCCccccc
Confidence 99999986643321110 000112335799999999999863
No 107
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=1.7e-17 Score=138.30 Aligned_cols=86 Identities=27% Similarity=0.381 Sum_probs=80.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|.|+.|.|.|+.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 34689999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCCc
Q 009954 373 ASGQSK 378 (521)
Q Consensus 373 ~~~~~~ 378 (521)
+.....
T Consensus 101 ~~~~~~ 106 (126)
T 3ex7_B 101 VRGPPK 106 (126)
T ss_dssp ESSSCC
T ss_pred CCCCCC
Confidence 755443
No 108
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-17 Score=126.77 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|.+||+ |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345789999999999999999999999 9999999999 799999999999999999999999 9999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7643
No 109
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=6.3e-17 Score=134.26 Aligned_cols=85 Identities=21% Similarity=0.338 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3455789999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 009954 371 ATASGQ 376 (521)
Q Consensus 371 ~~~~~~ 376 (521)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987443
No 110
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=6.9e-18 Score=126.64 Aligned_cols=75 Identities=25% Similarity=0.585 Sum_probs=72.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
+|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|++ |+|..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999985
No 111
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=137.81 Aligned_cols=85 Identities=31% Similarity=0.526 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 009954 371 ATASG 375 (521)
Q Consensus 371 ~~~~~ 375 (521)
+....
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98743
No 112
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=128.31 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ++..|.|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999998899999999999999999999998 47899999999999
Q ss_pred ccCCC
Q 009954 371 ATASG 375 (521)
Q Consensus 371 ~~~~~ 375 (521)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98744
No 113
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=133.69 Aligned_cols=80 Identities=43% Similarity=0.735 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999976
No 114
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=126.85 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCe--eCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK--MGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~--~~g~~l~v~ 369 (521)
.+.++|||+|||..+++++|.++|++||.|.+|.+++. +|||||+|.+.++|.+|++.|+|.. |.|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 34468999999999999999999999999999998853 7899999999999999999999875 889999999
Q ss_pred EccCC
Q 009954 370 RATAS 374 (521)
Q Consensus 370 ~~~~~ 374 (521)
|++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99763
No 115
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=132.70 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||.++|+++|.++|++||.|.+|.|+.++. |.++|||||+|.+.++|.+||. ++|..|.|+.|.|.++..
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 36899999999999999999999999999999999986 9999999999999999999999 899999999999999853
No 116
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=8.1e-17 Score=139.42 Aligned_cols=84 Identities=24% Similarity=0.374 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|.++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8743
No 117
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=7.2e-17 Score=138.77 Aligned_cols=138 Identities=20% Similarity=0.147 Sum_probs=100.1
Q ss_pred CCCcceEEEEEEcChHHHHHHHHHH-cCCeeCCeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 009954 332 TGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGG 410 (521)
Q Consensus 332 ~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (521)
...-+|+++|+|.+.++|++|++.| ||..+.| .|.+.++....... ..........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~----------------------~~~~~~~~~~ 65 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVT----------------------EGSHHHHHHM 65 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEE----------------------CSSSSCCCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccc----------------------cccccccccc
Confidence 3456899999999999999999999 9999999 99999885411000 0000000001
Q ss_pred CCCCCCCcceEEEeeCcC-CcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHH
Q 009954 411 MSLFGETLAKVLCLTEAI-TADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCAT 489 (521)
Q Consensus 411 ~~~~~~~~~~v~~l~~~~-~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~ 489 (521)
.+.......+|++ .|+. +.++ ++|+++|+.||.|..|.|+.+. +|+|||+|.+.++|..
T Consensus 66 ~~~~~~~~~~l~V-~nl~~~~t~-----------~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~ 125 (150)
T 2i2y_A 66 HRDSCPLDCKVYV-GNLGNNGNK-----------TELERAFGYYGPLRSVWVARNP--------PGFAFVEFEDPRDAAD 125 (150)
T ss_dssp CSSSSTTSCEEEE-ESCCSCCSC-----------HHHHHHHHHHSCEEEEEECSSS--------CSEEEEEESSHHHHHH
T ss_pred cccCCCCCCEEEE-eCCCCCCCH-----------HHHHHHHHhhCCEEEEEEeeCC--------CcEEEEEECCHHHHHH
Confidence 1111122333333 3332 2221 5999999999999999999862 4788999999999999
Q ss_pred HHHHHhCCeeCCcEEEEEEcCCC
Q 009954 490 AKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 490 Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
||..|||..|+|++|+|.|+...
T Consensus 126 A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 126 AVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999998765
No 118
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5e-18 Score=130.82 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999988876
Q ss_pred c
Q 009954 372 T 372 (521)
Q Consensus 372 ~ 372 (521)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 119
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=5e-17 Score=138.16 Aligned_cols=82 Identities=20% Similarity=0.343 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 290 ~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
.....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ec
Q 009954 370 RA 371 (521)
Q Consensus 370 ~~ 371 (521)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 120
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=134.21 Aligned_cols=79 Identities=18% Similarity=0.365 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.|+.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 368999999999999999999999999999999999989999999999999999999999 8999999999999999954
No 121
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=5.8e-18 Score=170.31 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 763
No 122
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=131.31 Aligned_cols=82 Identities=26% Similarity=0.585 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|++|++.|+|..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999884 45899999999999999999999999999999999999
Q ss_pred ccCC
Q 009954 371 ATAS 374 (521)
Q Consensus 371 ~~~~ 374 (521)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9763
No 123
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.5e-17 Score=132.12 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeecCCCC---CcceEEEEEEcChHHHHHHHHHHcCCeeCCeE
Q 009954 292 EGPDRVFVGGLPYYFTETQIK---ELLESFGTLHGFDLVKDRDTG---NSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (521)
...++|||+|||+.+++++|. ++|++||.|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345789999999999999999 999999999999999887644 55699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 009954 366 LTVRRATASG 375 (521)
Q Consensus 366 l~v~~~~~~~ 375 (521)
|.|.|+.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998744
No 124
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=5.3e-17 Score=131.14 Aligned_cols=83 Identities=25% Similarity=0.431 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.+ |..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 44578999999999999999999999999999999999889999999999999999999999975 69999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8743
No 125
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=126.13 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc--CCeeCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v~ 369 (521)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 44578999999999999999999999999999988865 7899999999999999999874 678999999999
Q ss_pred EccCCC
Q 009954 370 RATASG 375 (521)
Q Consensus 370 ~~~~~~ 375 (521)
|+....
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 998643
No 126
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=125.47 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=73.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.++ ..|.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999998 9999999999987
No 127
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-16 Score=128.15 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4457899999999999999999999999999999965 4568999999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8743
No 128
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=7.9e-18 Score=131.25 Aligned_cols=79 Identities=33% Similarity=0.567 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.+ |.+|+..|||..|.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999889999999999999999 99999999999999999999999763
No 129
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=6.5e-17 Score=132.33 Aligned_cols=79 Identities=20% Similarity=0.408 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|.++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34579999999999999999999999999999999875 456999999999999999999999999999999999999
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
.+
T Consensus 83 ~~ 84 (115)
T 3lqv_A 83 NA 84 (115)
T ss_dssp CH
T ss_pred cC
Confidence 64
No 130
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=138.98 Aligned_cols=83 Identities=22% Similarity=0.291 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--EEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCC----eeCCe
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHG--FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL----KMGDK 364 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~----~~~g~ 364 (521)
....++|||+|||..+++++|+++|++||.|.. |+|+.++.+|.++|||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345678999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEccCC
Q 009954 365 TLTVRRATAS 374 (521)
Q Consensus 365 ~l~v~~~~~~ 374 (521)
.|.|.|+.+.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999763
No 131
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=129.63 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||+.+++++|+++|++||.| .|.|+.++ +|.++|||||+|.+.++|++||+ +|+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455799999999999999999999999955 99999997 99999999999999999999995 799999999999999
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
+..
T Consensus 89 ~~~ 91 (102)
T 1wez_A 89 NST 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 865
No 132
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.6e-17 Score=127.94 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCC--eeCCeEEEE
Q 009954 292 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL--KMGDKTLTV 368 (521)
Q Consensus 292 ~~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~--~~~g~~l~v 368 (521)
.+.++|||+|||. .+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|++.|++. .|.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3557899999999 9999999999999999999999875 579999999999999999999864 599999999
Q ss_pred EEccC
Q 009954 369 RRATA 373 (521)
Q Consensus 369 ~~~~~ 373 (521)
.|+..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99985
No 133
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=6.8e-17 Score=132.46 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (521)
...++|||+|||..+++++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|++||+ |||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 44578999999999999999999999999 89999999975 9999999999999999999999 9999999999999
Q ss_pred EEccC
Q 009954 369 RRATA 373 (521)
Q Consensus 369 ~~~~~ 373 (521)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99853
No 134
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=131.01 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEe-ecCCCCCcceEEEEEEcChHHHHHHHHHHc--CCeeCCeEEEE
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLV-KDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTV 368 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~v~i~-~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v 368 (521)
..++|||+|||..+++++|+++|++||. |..|.|+ .+..+|.++|||||+|.+.++|.+|++.|+ +..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3468999999999999999999999998 9999998 787889999999999999999999999996 59999999999
Q ss_pred EEccCCC
Q 009954 369 RRATASG 375 (521)
Q Consensus 369 ~~~~~~~ 375 (521)
.|+.+..
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9998744
No 135
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=6.9e-17 Score=129.60 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCe-EE
Q 009954 294 PDRVFVGGLPYYF------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TL 366 (521)
Q Consensus 294 ~~~l~v~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~l 366 (521)
.++|||+|||..+ ++++|+++|++||.|..|.|+. .+|.++|||||+|.+.++|.+|+..|||..|.|+ .|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 4789999999999 7899999999999999999883 5899999999999999999999999999999998 99
Q ss_pred EEEEccC
Q 009954 367 TVRRATA 373 (521)
Q Consensus 367 ~v~~~~~ 373 (521)
.|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999975
No 136
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=131.75 Aligned_cols=81 Identities=27% Similarity=0.506 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC-CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR-DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
...++|||+|||..+++++|+++|++|| |..|.|+.++ .+|.++|||||+|.+.++|.+|| .|+|..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4457999999999999999999999999 9999999997 58999999999999999999999 8999999999999999
Q ss_pred ccCC
Q 009954 371 ATAS 374 (521)
Q Consensus 371 ~~~~ 374 (521)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9763
No 137
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=127.01 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCC--eeCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL--KMGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~--~~~g~~l~v~ 369 (521)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|++. .|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34578999999999999999999999999999998764 789999999999999999998764 5999999999
Q ss_pred EccCCC
Q 009954 370 RATASG 375 (521)
Q Consensus 370 ~~~~~~ 375 (521)
|+..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 997643
No 138
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.9e-17 Score=133.23 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
....++|||+|||..+++++|+++|+.||.| ..|.|+.++ +|.++|||||+|.+.++|.+||+. ||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3455789999999999999999999999999 899999997 999999999999999999999996 9999999999999
Q ss_pred EccC
Q 009954 370 RATA 373 (521)
Q Consensus 370 ~~~~ 373 (521)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9964
No 139
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1e-16 Score=133.03 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.|+..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 368999999999999999999999999999999999889999999999999999999999 7999999999999999975
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=129.55 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc--CCeeCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~v~ 369 (521)
.+.++|||+|||+.+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|++.|+ +..|.|++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34578999999999999999999999999999999875 7899999999999999999987 478999999999
Q ss_pred EccCCCC
Q 009954 370 RATASGQ 376 (521)
Q Consensus 370 ~~~~~~~ 376 (521)
|+..+..
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987443
No 141
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=129.34 Aligned_cols=81 Identities=20% Similarity=0.481 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee--------CC
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--------GD 363 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~--------~g 363 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 445799999999999999999999999999999999997 999999999999999999999999999999 68
Q ss_pred eEEEEEEccC
Q 009954 364 KTLTVRRATA 373 (521)
Q Consensus 364 ~~l~v~~~~~ 373 (521)
++|.|.|+.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899999975
No 142
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1e-16 Score=131.27 Aligned_cols=81 Identities=27% Similarity=0.507 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+. +|..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47899999999999999999999999999999999988999999999999999999999997 99999999999999987
Q ss_pred CC
Q 009954 374 SG 375 (521)
Q Consensus 374 ~~ 375 (521)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 143
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-16 Score=126.42 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC-----eEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-----KTL 366 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-----~~l 366 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 44578999999999999999999999999999999876 799999999999999999999999999 999
Q ss_pred EEEEccCC
Q 009954 367 TVRRATAS 374 (521)
Q Consensus 367 ~v~~~~~~ 374 (521)
.|.++.+.
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99999873
No 144
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=128.07 Aligned_cols=80 Identities=16% Similarity=0.332 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
...++|||+|||..+++++|+++|++||.|.. |.|+.+ .+|.++|||||+|.+.++|++||+. +|..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 44578999999999999999999999999987 888888 6999999999999999999999997 99999999999999
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 865
No 145
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=126.29 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456799999999999999999999999987 56666 5899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 009954 371 ATASG 375 (521)
Q Consensus 371 ~~~~~ 375 (521)
+.+..
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98743
No 146
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=122.52 Aligned_cols=77 Identities=27% Similarity=0.514 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||..|.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 445789999999999999999999999999999987 569999999999999999999999999999999999
Q ss_pred cCCCC
Q 009954 372 TASGQ 376 (521)
Q Consensus 372 ~~~~~ 376 (521)
.+...
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87443
No 147
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=130.42 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
.+.++|||+|||..+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345789999999999999866 7999999999988753 688999999999999999999999999999999999
Q ss_pred EEEccC
Q 009954 368 VRRATA 373 (521)
Q Consensus 368 v~~~~~ 373 (521)
|.|+..
T Consensus 104 V~~a~~ 109 (127)
T 2a3j_A 104 ITFSET 109 (127)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999976
No 148
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=9.4e-17 Score=134.10 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (521)
...++|||+|||+++|+++|+++|++||. |..|.|+.++. |.++|||||+|.+.++|++||+ |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34578999999999999999999999999 89999999976 9999999999999999999999 9999999999999
Q ss_pred EEccC
Q 009954 369 RRATA 373 (521)
Q Consensus 369 ~~~~~ 373 (521)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99853
No 149
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=4.1e-17 Score=122.39 Aligned_cols=75 Identities=23% Similarity=0.432 Sum_probs=71.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
+|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999999 5899999999999875
No 150
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=125.10 Aligned_cols=82 Identities=28% Similarity=0.426 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34557899999999999999999999874 677888888999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 009954 371 ATASG 375 (521)
Q Consensus 371 ~~~~~ 375 (521)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98743
No 151
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=120.66 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHH-cCCeeCCeEEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRR 370 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~v~~ 370 (521)
...++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.| +|..|.|+.|.|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34578999999999999999999999999999999874 789999999999999999999 99999999999999
Q ss_pred cc
Q 009954 371 AT 372 (521)
Q Consensus 371 ~~ 372 (521)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 152
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=128.01 Aligned_cols=75 Identities=25% Similarity=0.394 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
.+|||+|||+.+++++|+++|+.| .|..|.|+.++ +|.++|||||+|.+.++|.+|| .|||..|+|+.|.|..+.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 589999999999999999999999 89999999997 4999999999999999999999 599999999999999885
No 153
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.7e-17 Score=134.92 Aligned_cols=81 Identities=19% Similarity=0.316 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||+ |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 455799999999999999999999999999986666666799999999999999999999999 9999999999999999
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 154
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.9e-16 Score=127.20 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
..++|||+|||+.+++++|+++|++|| .|..+.|... .++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 346899999999999999999999999 8999988543 47899999999999999999999999999999999999
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 155
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=123.32 Aligned_cols=77 Identities=26% Similarity=0.528 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC--CeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~v~ 369 (521)
...++|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.|||..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34578999999999999999999999999999998764 689999999999999999999999999 9999999
Q ss_pred EccCC
Q 009954 370 RATAS 374 (521)
Q Consensus 370 ~~~~~ 374 (521)
|+.++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99764
No 156
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-17 Score=123.25 Aligned_cols=72 Identities=25% Similarity=0.405 Sum_probs=67.5
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCe-EEE
Q 009954 295 DRVFVGGLPYYF------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TLT 367 (521)
Q Consensus 295 ~~l~v~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~ 367 (521)
++|||+|||..+ ++++|+++|++||.|..|.|+. .+|.++|||||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 7799999999999999999883 5899999999999999999999999999999999 887
Q ss_pred E
Q 009954 368 V 368 (521)
Q Consensus 368 v 368 (521)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 157
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.6e-16 Score=120.22 Aligned_cols=75 Identities=29% Similarity=0.432 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+++ ||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 44578999999999999999999999999999999744 8999999999999999999999999999999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 158
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.7e-16 Score=124.04 Aligned_cols=77 Identities=34% Similarity=0.551 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|.++ +|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45579999999999999999999999999999999864 789999999999999999999999999999999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
.+.
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 159
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=1.8e-16 Score=145.64 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
..++|||+|||..+|+++|+++|++|| .|..|+|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 964
No 160
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-17 Score=130.36 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|.+||+ |||..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4568999999999999999999999999888 666666789999999999999999999999 99999999999999997
Q ss_pred CCC
Q 009954 373 ASG 375 (521)
Q Consensus 373 ~~~ 375 (521)
+..
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 161
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9e-16 Score=119.97 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+++ ||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34578999999999999999999999999999998743 9999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8743
No 162
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.6e-16 Score=124.90 Aligned_cols=78 Identities=18% Similarity=0.368 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34579999999999999999999999999999999876 789999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8743
No 163
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=3.8e-17 Score=136.87 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||+++|+++|+++|++|| |..|.|+.++. |.++|||||+|.+.++|++|| .||+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4457899999999999999999999999 67999999975 999999999999999999999 68999999999999998
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 763
No 164
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=2.2e-16 Score=124.92 Aligned_cols=80 Identities=14% Similarity=0.360 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
...++|||+|||..+++++|. ++|++||.|..|.+.. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345789999999999999999 9999999999998873 577889999999999999999999999999999999
Q ss_pred EEEccCC
Q 009954 368 VRRATAS 374 (521)
Q Consensus 368 v~~~~~~ 374 (521)
|.|+.+.
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999764
No 165
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=6.7e-17 Score=130.16 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (521)
...++|||+|||+.+++++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||+ |||..|+|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45578999999999999999999999998 89999999976 9999999999999999999999 9999999999999
Q ss_pred EEccC
Q 009954 369 RRATA 373 (521)
Q Consensus 369 ~~~~~ 373 (521)
.++.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99853
No 166
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=1.1e-15 Score=122.31 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|..|.|++ |||||+|.+.++|.+||+.|||..|.|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4557899999999999999999999999999999874 48999999999999999999999999999999999
Q ss_pred cCCCC
Q 009954 372 TASGQ 376 (521)
Q Consensus 372 ~~~~~ 376 (521)
.+...
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87443
No 167
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.5e-16 Score=125.11 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=72.4
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcC----hHH----HHHHHH--HHcCCe
Q 009954 295 DRVFVGGL----PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD----PAV----TDIACA--ALNGLK 360 (521)
Q Consensus 295 ~~l~v~nL----p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~----~~~----A~~Al~--~l~g~~ 360 (521)
+.|||+|| |+.+++++|+++|+.||.|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 433 788988 789999
Q ss_pred eCCeEEEEEEccC
Q 009954 361 MGDKTLTVRRATA 373 (521)
Q Consensus 361 ~~g~~l~v~~~~~ 373 (521)
|+|+.|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998865
No 168
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=1.3e-15 Score=120.15 Aligned_cols=75 Identities=16% Similarity=0.363 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 292 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 292 ~~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
...++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3457899999998 99999999999999999999883 68999999999999999999999999999999999
Q ss_pred ccCC
Q 009954 371 ATAS 374 (521)
Q Consensus 371 ~~~~ 374 (521)
+...
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9753
No 169
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=6.4e-16 Score=135.94 Aligned_cols=82 Identities=22% Similarity=0.364 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3455789999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ccC
Q 009954 371 ATA 373 (521)
Q Consensus 371 ~~~ 373 (521)
+..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 976
No 170
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=124.95 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=71.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccCC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~~ 374 (521)
++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999886 6899999999999999999999999999999999999763
No 171
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.1e-17 Score=131.47 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|.++|++||.|..+.+..+..+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 34579999999999999999999999999944322222227889999999999999999999999999999999999999
Q ss_pred cCCCC
Q 009954 372 TASGQ 376 (521)
Q Consensus 372 ~~~~~ 376 (521)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87443
No 172
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=3e-16 Score=125.11 Aligned_cols=75 Identities=20% Similarity=0.403 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|+++|++||.|..|.+.. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 357899999999999999999999999999999873 47899999999999999999999999999999999986
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=8e-16 Score=123.82 Aligned_cols=76 Identities=18% Similarity=0.447 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEE
Q 009954 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~ 370 (521)
....++|||+|||..+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3455799999999999999999999999999999987 67999999999999999999999999999999999
Q ss_pred ccCC
Q 009954 371 ATAS 374 (521)
Q Consensus 371 ~~~~ 374 (521)
+.+.
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 9763
No 174
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.4e-16 Score=121.40 Aligned_cols=78 Identities=28% Similarity=0.441 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|||..+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3457999999999999999999999999997 666643 57899999999999999999999999999999999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
.+.
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 175
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=4e-16 Score=123.13 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 44789999999999999999999999988766 2478899999999999999999999999999999999999997
Q ss_pred CCC
Q 009954 373 ASG 375 (521)
Q Consensus 373 ~~~ 375 (521)
+..
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 176
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=9.3e-16 Score=114.83 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=67.3
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~ 252 (521)
+..|||+||++.+|+++|+++|.+||+ |.++.+..++|||||+|.+.++|.+|+ .||+..+.|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~------------V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGP------------LVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCC------------EEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 457999999999999999999999998 788888889999999999999999999 7999999999999
Q ss_pred EeCC
Q 009954 253 VRRP 256 (521)
Q Consensus 253 v~~~ 256 (521)
|+.+
T Consensus 75 V~~A 78 (89)
T 2wbr_A 75 AESP 78 (89)
T ss_dssp EECC
T ss_pred EEEC
Confidence 9986
No 177
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-16 Score=126.18 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcC--CeeCCeEEEE
Q 009954 292 EGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG--LKMGDKTLTV 368 (521)
Q Consensus 292 ~~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~l~v 368 (521)
.+.++|||+|||.+ +++++|+++|++||.|.+|.|++. +|||||+|.+.++|.+|++.|++ ..|.|+.|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 44578999999998 999999999999999999999753 78999999999999999998864 5699999999
Q ss_pred EEccCC
Q 009954 369 RRATAS 374 (521)
Q Consensus 369 ~~~~~~ 374 (521)
.|+..+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999763
No 178
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.6e-16 Score=120.70 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcC-CeeCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-LKMGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g-~~~~g~~l~v~ 369 (521)
...++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|.|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 44578999999999999999999999999 6666553 378999999999999999999999 99999999999
Q ss_pred EccCCC
Q 009954 370 RATASG 375 (521)
Q Consensus 370 ~~~~~~ 375 (521)
|+.++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998743
No 179
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=128.30 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCe----eEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTL----HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i----~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
....+|||+|||+++|+++|+++|++||.| ..|.|+.+ .+|.++|||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345789999999999999999999999975 68999998 4899999999999999999999995 99999999999
Q ss_pred EEEcc
Q 009954 368 VRRAT 372 (521)
Q Consensus 368 v~~~~ 372 (521)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 99885
No 180
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=4.4e-16 Score=124.38 Aligned_cols=79 Identities=29% Similarity=0.581 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||..+++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++|+. +|..|+|+.|.|.++..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 3689999999999999999999999999999999998 99999999999999999999999 99999999999999976
Q ss_pred CC
Q 009954 374 SG 375 (521)
Q Consensus 374 ~~ 375 (521)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 181
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-16 Score=125.23 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
.++|||+|||..+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 35899999999999999999999999999998874 478999999999999999999999999999999999976
Q ss_pred C
Q 009954 374 S 374 (521)
Q Consensus 374 ~ 374 (521)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 182
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.4e-15 Score=117.77 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESF--GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
...++|||+|||..+++++|+++|++| |.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 445789999999999999999999999 899998865 5699999999999999999999999999999999
Q ss_pred EccCCC
Q 009954 370 RATASG 375 (521)
Q Consensus 370 ~~~~~~ 375 (521)
|+.+..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998743
No 183
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=3.1e-15 Score=119.12 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHHHhcCCeeEEEEeecCCC-CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEE
Q 009954 293 GPDRVFVGGLPY-----YFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (521)
Q Consensus 293 ~~~~l~v~nLp~-----~~te~~l~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (521)
+.++|+|.||.. +.++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|++.|||.+|.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 446899999963 2378999999999999999999998654 6899999999999999999999999999999999
Q ss_pred EEEEccC
Q 009954 367 TVRRATA 373 (521)
Q Consensus 367 ~v~~~~~ 373 (521)
.|.|+..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999953
No 184
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3.3e-17 Score=134.27 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCe
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHG--------FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (521)
..++|||+|||..+++++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 3468999999999999999999999999998 99999988999999999999999999999999999999999
Q ss_pred EEEEEEccC
Q 009954 365 TLTVRRATA 373 (521)
Q Consensus 365 ~l~v~~~~~ 373 (521)
.|.|.|+.+
T Consensus 86 ~l~V~~a~~ 94 (116)
T 2lcw_A 86 PIKVSFATR 94 (116)
Confidence 999999975
No 185
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=121.95 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=69.3
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee-----CCe
Q 009954 292 EGPDRVFV--GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM-----GDK 364 (521)
Q Consensus 292 ~~~~~l~v--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~-----~g~ 364 (521)
.+.++||| +||+..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34568999 779999999999999999999999987642 78999999999999999999999988 789
Q ss_pred EEEEEEccCC
Q 009954 365 TLTVRRATAS 374 (521)
Q Consensus 365 ~l~v~~~~~~ 374 (521)
+|.|.|+...
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999999763
No 186
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=119.03 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
..++|||+|||..+++++|+++|++||.|..| .|+.++.+| .|||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999 588776543 4999999999999999999999999999999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 875
No 187
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=2.6e-15 Score=121.63 Aligned_cols=73 Identities=25% Similarity=0.470 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 293 GPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 293 ~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
..++|||+|||.. +++++|+++|++||.|..|.| ++|||||+|.+.++|++|++.|+|..|.|+.|.|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3479999999999 999999999999999999998 4789999999999999999999999999999999999
Q ss_pred cC
Q 009954 372 TA 373 (521)
Q Consensus 372 ~~ 373 (521)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 188
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=2.6e-15 Score=122.92 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=69.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceE-EEEEEcChHHHHHHHHHHcCCeeCC--eEEEEEEc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY-GFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRA 371 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~ 371 (521)
..|||+||++.+|+++|+++|++||.|..|.|+... +|| |||+|.+.++|.+|++.|||..|.| +.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 468899999999999999999999999999887652 677 9999999999999999999999988 99999999
Q ss_pred cCC
Q 009954 372 TAS 374 (521)
Q Consensus 372 ~~~ 374 (521)
++.
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 863
No 189
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=6.2e-16 Score=126.93 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCee--EEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLH--GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~ 369 (521)
...++|||+|||+.+|+++|+++|++| .|. .|.|+.++. |.++|||||+|.+.++|++||+ +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 445789999999999999999999999 666 899999976 9999999999999999999998 57899999999999
Q ss_pred EccC
Q 009954 370 RATA 373 (521)
Q Consensus 370 ~~~~ 373 (521)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8853
No 190
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1e-15 Score=120.65 Aligned_cols=76 Identities=16% Similarity=0.378 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 293 GPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 293 ~~~~l~v~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
..++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 446899999998 99999999999999999999984 679999999999999999999999999999999999
Q ss_pred cCCCC
Q 009954 372 TASGQ 376 (521)
Q Consensus 372 ~~~~~ 376 (521)
.....
T Consensus 81 ~~~~~ 85 (96)
T 2kvi_A 81 SSNAR 85 (96)
T ss_dssp ECCCC
T ss_pred CcCCC
Confidence 77443
No 191
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.61 E-value=8.8e-16 Score=119.45 Aligned_cols=80 Identities=21% Similarity=0.199 Sum_probs=66.9
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHH-c-cCceecCce
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-L-DGIIFEGVA 250 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G-~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~-l-~g~~~~g~~ 250 (521)
+++|||+|||+++|+++|+++|++|| .|..+. .+.+..++.++|||||+|.+.++|.+|++ + ++..+.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~------i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVR------LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCC------SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEE------EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 46899999999999999999999999 554432 24455667889999999999999999994 5 567799999
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|.|.++.+.
T Consensus 75 i~V~~a~~~ 83 (91)
T 2lxi_A 75 VSMHYSDPK 83 (91)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987643
No 192
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.61 E-value=2.1e-16 Score=124.92 Aligned_cols=79 Identities=18% Similarity=0.348 Sum_probs=65.1
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||+++|+++|+++|++||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .|||..|.|++|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAK------LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeE------eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 356899999999999999999999999853311 0122223566799999999999999999 699999999999
Q ss_pred EEeCCC
Q 009954 252 RVRRPT 257 (521)
Q Consensus 252 ~v~~~~ 257 (521)
+|.+++
T Consensus 92 ~V~~Ak 97 (99)
T 4fxv_A 92 KVSYAR 97 (99)
T ss_dssp EEEECC
T ss_pred EEEEee
Confidence 999864
No 193
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=114.46 Aligned_cols=71 Identities=13% Similarity=0.170 Sum_probs=64.1
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 294 PDR-VFVGGLPYYFTETQ----IKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 294 ~~~-l~v~nLp~~~te~~----l~~~F~~~G-~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
..+ |||+|||..+++++ |+++|++|| .|.+| +| |+|||+|.+.++|++|++.|+|..|.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 345 99999999999987 558999995 99888 34 8999999999999999999999999999999
Q ss_pred EEEccCC
Q 009954 368 VRRATAS 374 (521)
Q Consensus 368 v~~~~~~ 374 (521)
|.||+..
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9999763
No 194
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=121.31 Aligned_cols=74 Identities=34% Similarity=0.468 Sum_probs=65.1
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCCeEEEEecCHHHHHHHH-HccCceecCceEE
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~-~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~ 252 (521)
++|||+|||..+|+++|+++|++||. |..+.+.. ++|||||+|.+.++|.+|+ .|++..+.|+.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGP------------LRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCC------------CSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 47999999999999999999999997 44455444 5999999999999999999 5999999999999
Q ss_pred EeCCCCCC
Q 009954 253 VRRPTDYN 260 (521)
Q Consensus 253 v~~~~~~~ 260 (521)
|.++....
T Consensus 69 V~~a~~~~ 76 (101)
T 2hvz_A 69 VELSTGMP 76 (101)
T ss_dssp EEESSSCC
T ss_pred EEEccCCC
Confidence 99876544
No 195
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.60 E-value=3.3e-15 Score=127.05 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=69.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC--eEEEEEEcc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRAT 372 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~ 372 (521)
.+|||+||++.+++++|+++|++||.|..|.|.... ++|||||+|.+.++|++|++.|||..|.| +.|+|.|++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 468999999999999999999999999999987542 57899999999999999999999999965 999999998
Q ss_pred CC
Q 009954 373 AS 374 (521)
Q Consensus 373 ~~ 374 (521)
+.
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 196
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=1.9e-15 Score=116.98 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|+++|++| .|..+.|. .++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34689999999999999999999999 99999884 468999999999999999999999999999999999996
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 197
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=7.6e-16 Score=131.17 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE--------EEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGF--------DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v--------~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 363 (521)
...++|||+|||..+++++|.++|++||.|..+ .+. .+|.++|||||+|.+.++|.+||..|||..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 445789999999999999999999999998764 332 378899999999999999999999999999999
Q ss_pred eEEEEEEccCCC
Q 009954 364 KTLTVRRATASG 375 (521)
Q Consensus 364 ~~l~v~~~~~~~ 375 (521)
+.|.|.|+....
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997643
No 198
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.8e-15 Score=116.16 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|.+||+.|+|..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34578999996 89999999999999999999984 45789999999999999999999999999999999999
Q ss_pred cCCCC
Q 009954 372 TASGQ 376 (521)
Q Consensus 372 ~~~~~ 376 (521)
.+...
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87443
No 199
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-15 Score=117.10 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|+++|++||.|..| +.++.+|. ||||+|.+.++|.+||+ |+|..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 44689999999999999999999999999987 55555665 99999999999999999 99999999999999987
Q ss_pred CC
Q 009954 373 AS 374 (521)
Q Consensus 373 ~~ 374 (521)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 63
No 200
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.9e-15 Score=118.00 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=68.3
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-Hcc--CceecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIFEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~--g~~~~g 248 (521)
...++|||+|||+.+|+++|+++|++||. |.++.+..++|||||+|.+.++|..|+ .|+ +..|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34679999999999999999999999998 778888888999999999999999999 465 478999
Q ss_pred ceEEEeCCCCCC
Q 009954 249 VAVRVRRPTDYN 260 (521)
Q Consensus 249 ~~i~v~~~~~~~ 260 (521)
++|.|.++....
T Consensus 82 r~l~V~~A~~~~ 93 (105)
T 1sjq_A 82 QPIYIQFSNHKE 93 (105)
T ss_dssp EECCBCCCSSSS
T ss_pred EEEEEEEcCCCC
Confidence 999999876543
No 201
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.2e-15 Score=118.88 Aligned_cols=96 Identities=22% Similarity=0.362 Sum_probs=80.9
Q ss_pred CCCcceEEEeeCcCCcccC-CChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHH
Q 009954 415 GETLAKVLCLTEAITADAL-ADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNA 493 (521)
Q Consensus 415 ~~~~~~v~~l~~~~~~~~~-~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ 493 (521)
.+.++++++|.|+++..++ .+..+|++++++|+++|++||.|..|.|+ +.. .+|+|||+|.+.++|.+|+..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~------~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH------PDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC------TTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC------CCEEEEEEECCHHHHHHHHHH
Confidence 4578899999999888765 34567899999999999999999999774 321 258889999999999999999
Q ss_pred HhCCeeCCcEEEEEEcCC-CCcccc
Q 009954 494 LSGRKFGGNTVNAFYYPE-DKYFNK 517 (521)
Q Consensus 494 lng~~~~gr~l~v~~~~~-~~~~~~ 517 (521)
|||..|+|++|+|.|+.. .+|..+
T Consensus 84 lng~~~~gr~l~v~~a~~~~~~~~~ 108 (112)
T 2dit_A 84 LDGRWFGGRQITAQAWDGTTDYQSG 108 (112)
T ss_dssp STTCEETTEECEEEECCSCCCSSCC
T ss_pred cCCCEECCcEEEEEEeCCCCCcccC
Confidence 999999999999999876 455443
No 202
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=8.8e-15 Score=119.42 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceE-EEEEEcChHHHHHHHHHHcCCeeCC--eEEEEEEcc
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY-GFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRAT 372 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~l~v~~~~ 372 (521)
.|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.|+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4789999999999999999999999999998753 276 9999999999999999999999977 699999998
Q ss_pred CC
Q 009954 373 AS 374 (521)
Q Consensus 373 ~~ 374 (521)
+.
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=5e-15 Score=117.88 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhh-ccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcC
Q 009954 437 EEYEEILEDMREEC-GKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 510 (521)
Q Consensus 437 ~~~~~~~~dl~~~f-~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~ 510 (521)
..|.+++++|+++| ++||+|.+|.|+++.. + ..+|+|||+|.+.++|.+|+..|||+.|+|++|+|.|++
T Consensus 34 ~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~---~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 34 EHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-D---HLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-S---SSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEEEeCCC-C---CccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 34677888899999 9999999999998753 3 346889999999999999999999999999999999975
No 204
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=2.4e-15 Score=122.58 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeE-----EE
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT-----LT 367 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~-----l~ 367 (521)
..++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3478999999999999999999999999999999765 89999999999999999999999999988 66
Q ss_pred EEEccC
Q 009954 368 VRRATA 373 (521)
Q Consensus 368 v~~~~~ 373 (521)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666644
No 205
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=115.44 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=73.1
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceE
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
...++|||+|||..+|+++|+++|.+||.|.. . .+.+..++.++|||||+|.+.++|.+|++||+..|.|+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~------~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-L------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E------EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 34679999999999999999999999999875 2 2677788999999999999999999999999999999999
Q ss_pred EEeCCCCC
Q 009954 252 RVRRPTDY 259 (521)
Q Consensus 252 ~v~~~~~~ 259 (521)
.|.++...
T Consensus 88 ~V~~a~~~ 95 (101)
T 1fj7_A 88 KLEKPKGR 95 (101)
T ss_dssp EEECCSCC
T ss_pred EEEEcCCC
Confidence 99987654
No 206
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=3.9e-15 Score=116.02 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=67.5
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCce--ecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII--FEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~--~~g 248 (521)
.++++|||+|||..+|+++|+++|++||. |.++.+.+.+|||||+|.+.++|..|+ .|++.. +.|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGP------------ISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 34679999999999999999999999998 777888889999999999999999999 688764 789
Q ss_pred ceEEEeCCCC
Q 009954 249 VAVRVRRPTD 258 (521)
Q Consensus 249 ~~i~v~~~~~ 258 (521)
++|.|++++.
T Consensus 87 r~i~V~~S~~ 96 (100)
T 3r27_A 87 HPAFVNYSTS 96 (100)
T ss_dssp EEEEEEECSC
T ss_pred cEEEEEeccc
Confidence 9999998764
No 207
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=7.8e-16 Score=120.18 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=67.2
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHh--hcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCc---
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTA--IGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI--- 244 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~--~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~--- 244 (521)
.....+|||+|||+.+|+++|+++|++||.+ ... ..+.+..++.++|||||+|.+.++|.+|+ .|||.
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v------~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~ 79 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNI------RLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPP 79 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGE------ECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEE------EEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCC
Confidence 4557799999999999999999999999953 221 11334445778999999999999999999 68886
Q ss_pred -eecCceEEEeCCCC
Q 009954 245 -IFEGVAVRVRRPTD 258 (521)
Q Consensus 245 -~~~g~~i~v~~~~~ 258 (521)
.+.|++|.|.++++
T Consensus 80 ~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 80 LKIDGKTIGVDFAKS 94 (95)
T ss_dssp EEETTEEEEEEECCC
T ss_pred ceECCEEEEEEEccC
Confidence 58999999998753
No 208
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=9.8e-15 Score=112.91 Aligned_cols=74 Identities=18% Similarity=0.344 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCe--eCCeEEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK--MGDKTLTVR 369 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~--~~g~~l~v~ 369 (521)
...++|||+|||.++++++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|.+ |+|.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 44579999999999999999999999999999999875 68999999999999983 56654 569999999
Q ss_pred EccCC
Q 009954 370 RATAS 374 (521)
Q Consensus 370 ~~~~~ 374 (521)
++.++
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 99764
No 209
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=1.9e-15 Score=123.52 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=83.4
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---cCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
..++|||+|||..+|+++|+++|..||. |..+.+ +.++|||||+|.+.++|..|+ .|||..+.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGP------------IRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3579999999999999999999999998 444444 556899999999999999999 599999999
Q ss_pred ceEEEeCCCCCCccccccCCCCCCCCCcccccccCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC
Q 009954 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320 (521)
Q Consensus 249 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~F~~~G~ 320 (521)
+.|.|.++..... ..+++...++++|.++|++||.
T Consensus 75 ~~l~v~~a~~~~~-------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 75 RYLVVLYYNANRA-------------------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CBCEEEECCHHHH-------------------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEEEEecCChh-------------------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 9999998542211 0367777889999999999985
No 210
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=7.7e-15 Score=113.36 Aligned_cols=71 Identities=24% Similarity=0.541 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM 361 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~ 361 (521)
..++|||+|||..+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 34689999999999999999999999 8 8999988765 789999999999999999 8999999
Q ss_pred CCeEEEEEE
Q 009954 362 GDKTLTVRR 370 (521)
Q Consensus 362 ~g~~l~v~~ 370 (521)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 211
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.9e-15 Score=119.79 Aligned_cols=77 Identities=27% Similarity=0.432 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEE
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT---GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v 368 (521)
...++|||+|||..+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3457899999999999999999999999999 888887766 7999999999999999999999983 255555555
Q ss_pred EEc
Q 009954 369 RRA 371 (521)
Q Consensus 369 ~~~ 371 (521)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 443
No 212
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=2.6e-14 Score=110.37 Aligned_cols=84 Identities=46% Similarity=0.825 Sum_probs=71.6
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceE
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
...++|||+|||+.+|+++|+++|.+||.+.+... .++..+..+.+..++|||||+|.+.++|.+|+.|||..+.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~-~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhccccc-CCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 34679999999999999999999999975544211 12234888999999999999999999999999999999999999
Q ss_pred EEeCC
Q 009954 252 RVRRP 256 (521)
Q Consensus 252 ~v~~~ 256 (521)
+|++|
T Consensus 83 ~V~rp 87 (87)
T 2hzc_A 83 KIRRP 87 (87)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99863
No 213
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.5e-14 Score=114.85 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=67.3
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccC--ceecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG--IIFEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g 248 (521)
.+.++|||+|||+.+|+++|+++|.+||. |..+.+...+|||||+|.+.++|.+|+ .|++ ..|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGT------------ICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34679999999999999999999999997 677777778999999999999999999 5765 45999
Q ss_pred ceEEEeCCCCCC
Q 009954 249 VAVRVRRPTDYN 260 (521)
Q Consensus 249 ~~i~v~~~~~~~ 260 (521)
++|.|.++....
T Consensus 81 r~l~V~~a~~~~ 92 (104)
T 1wex_A 81 QQAFFNYSTSKR 92 (104)
T ss_dssp SBCEEEECSSSS
T ss_pred EEEEEEEccCcc
Confidence 999999976543
No 214
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=5.6e-15 Score=116.43 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=68.5
Q ss_pred ccCCeEEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccC--ceec
Q 009954 172 RHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG--IIFE 247 (521)
Q Consensus 172 ~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g--~~~~ 247 (521)
.+.++|||+|||+ .+|+++|+++|.+||. |.++.+..++|||||+|.+.++|..|+ .|++ ..|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGV------------ISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSC------------EEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 3578999999999 9999999999999998 788888888999999999999999999 5775 5699
Q ss_pred CceEEEeCCCCCC
Q 009954 248 GVAVRVRRPTDYN 260 (521)
Q Consensus 248 g~~i~v~~~~~~~ 260 (521)
|++|.|.++..+.
T Consensus 81 Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 81 GKPVRVHLSQKYK 93 (102)
T ss_dssp TEECEEEEECCCT
T ss_pred CcEEEEEECCCCC
Confidence 9999999876543
No 215
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=114.08 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=68.0
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-Hc--cCceecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-AL--DGIIFEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l--~g~~~~g 248 (521)
.+.++|||+|||+.+|+++|+++|.+||. |.++.+...+|||||+|.+.++|..|+ .| ++..+.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGK------------VTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34679999999999999999999999997 677777788999999999999999999 45 5788999
Q ss_pred ceEEEeCCCCCC
Q 009954 249 VAVRVRRPTDYN 260 (521)
Q Consensus 249 ~~i~v~~~~~~~ 260 (521)
++|.|.++....
T Consensus 81 r~l~V~~a~~~~ 92 (101)
T 2cq1_A 81 QPIYIQYSNHKE 92 (101)
T ss_dssp EECEEEECSCSS
T ss_pred cEEEEEEcCccc
Confidence 999999976543
No 216
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.53 E-value=2.3e-14 Score=144.15 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=61.0
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
++|.++|+.||.|+.|.|+.+..++.. +|||||+|.+.++|.+||..|||..|+|+.|.|.|+....
T Consensus 117 ~~L~~~F~~~G~I~~v~i~~d~~tg~~---kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 117 SKLRREFEVYGPIKRIHMVYSKRSGKP---RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred HHHHHHHHHcCCeeEEEeeccCCCCCc---cceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 599999999999999999998766654 6889999999999999999999999999999999987543
No 217
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.5e-14 Score=113.51 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=71.6
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
.....++|||+|||..+|+++|+++|.+||. |..+.+...+|||||+|.+.++|.+|+ .|+|..|.|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ------------IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3456789999999999999999999999997 778888888999999999999999999 799999999
Q ss_pred ceEEEeCCCCCC
Q 009954 249 VAVRVRRPTDYN 260 (521)
Q Consensus 249 ~~i~v~~~~~~~ 260 (521)
+.|.|.++....
T Consensus 89 ~~l~v~~a~~~~ 100 (109)
T 1x4g_A 89 HVVKCYWGKESP 100 (109)
T ss_dssp EECEEECCCCCC
T ss_pred cEEEEEecCCCC
Confidence 999999976543
No 218
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.53 E-value=6.6e-15 Score=120.27 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=68.0
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....++|||+|||..+|+++|+++|.+||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK------VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEE------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34568999999999999999999999999854311 0111123456799999999999999999 7999999999
Q ss_pred eEEEeCCCCCC
Q 009954 250 AVRVRRPTDYN 260 (521)
Q Consensus 250 ~i~v~~~~~~~ 260 (521)
.|+|.++....
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999876543
No 219
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=3e-14 Score=113.51 Aligned_cols=81 Identities=11% Similarity=0.205 Sum_probs=70.3
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeecCCC--CCcceEEEEEEcChHHHHHHHHHHcCCe
Q 009954 293 GPDRVFVGGL--PYYFT--------ETQIKELLESFGTLHGFDLVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGLK 360 (521)
Q Consensus 293 ~~~~l~v~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~~--g~~~g~afV~f~~~~~A~~Al~~l~g~~ 360 (521)
++++|.|.|| |..+. +++|+++|++||.|.+|.|+++..+ +.++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568999999 33332 3789999999999999999988654 4689999999999999999999999999
Q ss_pred eCCeEEEEEEccC
Q 009954 361 MGDKTLTVRRATA 373 (521)
Q Consensus 361 ~~g~~l~v~~~~~ 373 (521)
|+|+.|.|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999853
No 220
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.9e-14 Score=112.11 Aligned_cols=77 Identities=27% Similarity=0.387 Sum_probs=66.8
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec----CCCCeEEEEecCHHHHHHHH-HccCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM-ALDGII 245 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~----~~~g~afV~f~~~~~a~~A~-~l~g~~ 245 (521)
....++|||+|||..+|+++|+++|.+||. |..+.+. .++|||||+|.+.++|.+|+ .||+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGP------------CKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRK 79 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSC------------EEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCC------------EeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCC
Confidence 345789999999999999999999999998 4444443 35799999999999999999 599999
Q ss_pred ecCceEEEeCCCCC
Q 009954 246 FEGVAVRVRRPTDY 259 (521)
Q Consensus 246 ~~g~~i~v~~~~~~ 259 (521)
|.|+.|.|.++...
T Consensus 80 ~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 80 ILGKEVKVNWATTP 93 (103)
T ss_dssp ETTEEEEEEECCCT
T ss_pred cCCCeEEEEECCCC
Confidence 99999999987654
No 221
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.7e-14 Score=114.86 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=68.0
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||.++|+++|+++|.+||. |..+.+..++|||||+|.+.++|..|+ .|||..|.|+.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~------------i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGF------------ILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34679999999999999999999999997 566677789999999999999999999 79999999999
Q ss_pred EEEeCCCC
Q 009954 251 VRVRRPTD 258 (521)
Q Consensus 251 i~v~~~~~ 258 (521)
|+|.++..
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99998653
No 222
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=2.9e-14 Score=116.99 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEc
Q 009954 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~ 371 (521)
...++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34578999996 69999999999999999999986 35889999999999999999999999999999999999
Q ss_pred cCCC
Q 009954 372 TASG 375 (521)
Q Consensus 372 ~~~~ 375 (521)
.+..
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8743
No 223
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=112.32 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=67.4
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||..+|+++|+++|.+||.|. ..+.++.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-----------~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-----------LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-----------SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-----------EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4467999999999999999999999999751 23445688999999999999999999 79999999999
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|.|.++...
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999986543
No 224
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.51 E-value=3.4e-14 Score=114.06 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=64.6
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHH-HhhcCCCCCCCCceEEEEe--cCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-~~~~~~~~~~~~~v~~~~~--~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
....+|||+|||+.+|+++|+++|.+|| .| ..+.+ ..++|||||+|.+.++|++|+ .|||..|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v------------~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLET------------TFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCC------------SEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCee------------EEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3457899999999999999999999999 63 33333 357899999999999999999 69999999
Q ss_pred CceEEEeCCC
Q 009954 248 GVAVRVRRPT 257 (521)
Q Consensus 248 g~~i~v~~~~ 257 (521)
|+.|.|.++.
T Consensus 94 Gr~i~V~~a~ 103 (111)
T 2jvr_A 94 GSVITVERDD 103 (111)
T ss_dssp TEEEEEEESC
T ss_pred CeEEEEEECC
Confidence 9999999764
No 225
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=114.45 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=71.4
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||..+|+++|+++|.+||.|..+. ..++...+.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP------IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC------CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE------EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3467999999999999999999999999975432 1455557888999999999999999999 69999999999
Q ss_pred EEEeCCCCCC
Q 009954 251 VRVRRPTDYN 260 (521)
Q Consensus 251 i~v~~~~~~~ 260 (521)
|.|.++....
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 9999876543
No 226
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=110.58 Aligned_cols=73 Identities=22% Similarity=0.367 Sum_probs=67.0
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-Hc-cCceecCc
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-AL-DGIIFEGV 249 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l-~g~~~~g~ 249 (521)
...++|||+|||..+|+++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+ .| ++..+.|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~------------i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGE------------IRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCC------------EeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 44679999999999999999999999987 777777788999999999999999999 48 99999999
Q ss_pred eEEEeCC
Q 009954 250 AVRVRRP 256 (521)
Q Consensus 250 ~i~v~~~ 256 (521)
.|.|.++
T Consensus 78 ~l~v~~a 84 (85)
T 2ytc_A 78 RLNVKWG 84 (85)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9999875
No 227
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.8e-14 Score=111.25 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=68.3
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec--Cc
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE--GV 249 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~ 249 (521)
..++|||+|||..+|+++|+++|.+||. |..+.+...+|||||+|.+.++|.+|+ .||+..|. |+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGS------------IRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSC------------EEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 4578999999999999999999999997 777777778999999999999999999 59999999 99
Q ss_pred eEEEeCCCCC
Q 009954 250 AVRVRRPTDY 259 (521)
Q Consensus 250 ~i~v~~~~~~ 259 (521)
.|.|.++...
T Consensus 84 ~l~V~~a~~~ 93 (97)
T 1why_A 84 RLRVDFAKSG 93 (97)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999987643
No 228
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=114.55 Aligned_cols=77 Identities=29% Similarity=0.500 Sum_probs=66.7
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---cCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
...++|||+|||..+|+++|+++|.+||. |..+.+ ..++|||||+|.+.++|.+|+ .||+..|.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGA------------IRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45689999999999999999999999998 444443 335789999999999999999 79999999
Q ss_pred CceEEEeCCCCCC
Q 009954 248 GVAVRVRRPTDYN 260 (521)
Q Consensus 248 g~~i~v~~~~~~~ 260 (521)
|+.|.|.++....
T Consensus 88 g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 88 GYRLRVEFPRSGR 100 (109)
T ss_dssp TEECEEECCCCCC
T ss_pred CeEEEEEEcccCC
Confidence 9999999876543
No 229
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=7.4e-15 Score=109.92 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=63.6
Q ss_pred eEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEEEeC
Q 009954 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255 (521)
Q Consensus 176 ~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~v~~ 255 (521)
+|||+|||+.+|+++|+++|++||.|..+.+ +.+...+.++|||||+|.+.++|++|+++++..+.|+.|.|++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML------MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC------CBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEE------EecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 5899999999999999999999998644321 2222346678999999999999999999999999999999987
Q ss_pred C
Q 009954 256 P 256 (521)
Q Consensus 256 ~ 256 (521)
+
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 4
No 230
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=4.1e-14 Score=111.40 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=66.0
Q ss_pred hccCCeEEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 171 TRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 171 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
....++|||+|||. .+++++|+++|.+||. |..+.+ .+|||||+|.+.++|.+|+ .|||..+.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34578999999998 9999999999999997 566666 4899999999999999999 699999999
Q ss_pred ceEEEeCCCC
Q 009954 249 VAVRVRRPTD 258 (521)
Q Consensus 249 ~~i~v~~~~~ 258 (521)
+.|.|.++..
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 9999998653
No 231
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-14 Score=116.82 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=66.8
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||..+|+++|+++|.+||.|..+.+ +.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM------PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC------CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 45679999999999999999999999998432111 111123456799999999999999999 59999999999
Q ss_pred EEEeCCCCCC
Q 009954 251 VRVRRPTDYN 260 (521)
Q Consensus 251 i~v~~~~~~~ 260 (521)
|.|.++....
T Consensus 87 l~v~~a~~~~ 96 (105)
T 1x5u_A 87 IRVNKASAHN 96 (105)
T ss_dssp CEEEETTTTS
T ss_pred EEEEECCCCC
Confidence 9999876543
No 232
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7e-14 Score=109.96 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=65.9
Q ss_pred cCCeEEEeCCCccCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEecCC---CCeEEEEecCHHHHHHHH-HccCc
Q 009954 173 HARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYINHE---KKFAFVEMRTVEEASNAM-ALDGI 244 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~----~~f~~~G~~~~~~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~a~~A~-~l~g~ 244 (521)
..++|||+|||..+++++|+ ++|.+||. |..+.+... +|||||+|.+.++|.+|+ .|||.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~------------v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGK------------VKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC------------EEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCc------------EEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999999999999 99999997 566665433 899999999999999999 69999
Q ss_pred eecCceEEEeCCCCC
Q 009954 245 IFEGVAVRVRRPTDY 259 (521)
Q Consensus 245 ~~~g~~i~v~~~~~~ 259 (521)
.|.|+.|+|.++...
T Consensus 76 ~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 76 KIGSKKILVSLATGA 90 (96)
T ss_dssp EETTEEEEEEECCCS
T ss_pred EECCeEEEEEEcCCC
Confidence 999999999987543
No 233
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=117.67 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=66.0
Q ss_pred cCCeEEEeCCCccCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 173 HARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~----~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
..++|||+|||+.+++++|+ ++|++||.|.. |.....+.++|||||+|.+.++|..|+ .|||..|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~---------v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILD---------IVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE---------EEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE---------EEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 35789999999999999876 69999998432 111223567899999999999999999 79999999
Q ss_pred CceEEEeCCCCCCc
Q 009954 248 GVAVRVRRPTDYNP 261 (521)
Q Consensus 248 g~~i~v~~~~~~~~ 261 (521)
|++|.|.++.....
T Consensus 99 gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 99 GNPLVITFSETPQS 112 (127)
T ss_dssp TSCCEEEECCCCCH
T ss_pred CCEEEEEEccCcch
Confidence 99999999775543
No 234
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-14 Score=116.78 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=66.9
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-Hcc--CceecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIFEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~--g~~~~g 248 (521)
.+.++|||+|||+.+|+++|+++|++||. |.++.+...+|||||+|.+.++|.+|+ .|+ +..|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSC------------CCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34678999999999999999999999998 566666667999999999999999999 576 468999
Q ss_pred ceEEEeCCCCCC
Q 009954 249 VAVRVRRPTDYN 260 (521)
Q Consensus 249 ~~i~v~~~~~~~ 260 (521)
++|.|.++....
T Consensus 97 r~l~V~~a~~k~ 108 (119)
T 2ad9_A 97 QPIYIQFSNHKE 108 (119)
T ss_dssp BCCEEEECSSSS
T ss_pred eEEEEEEccCCC
Confidence 999999876543
No 235
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-14 Score=112.18 Aligned_cols=76 Identities=20% Similarity=0.423 Sum_probs=65.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
..++|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. +..+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 3579999999999999999999999999999998865 689999999999999864321 345699999999997
Q ss_pred CCC
Q 009954 373 ASG 375 (521)
Q Consensus 373 ~~~ 375 (521)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 236
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-14 Score=114.37 Aligned_cols=76 Identities=29% Similarity=0.496 Sum_probs=69.1
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||..+|+++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGK------------AGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCC------------CSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCC------------eEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 45679999999999999999999999987 667777788999999999999999999 79999999999
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|.|.++...
T Consensus 81 l~v~~a~~~ 89 (99)
T 2cpj_A 81 LRVRFACHS 89 (99)
T ss_dssp CEEEESSCC
T ss_pred EEEEEcCCC
Confidence 999987653
No 237
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=7.1e-14 Score=113.41 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCC--C---CHHHHHHHHHhcCCeeEEEEeecCC----CCCcceEEEEEEcChHHHHHHHHHHcCCeeCCe
Q 009954 294 PDRVFVGGLPYY--F---TETQIKELLESFGTLHGFDLVKDRD----TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364 (521)
Q Consensus 294 ~~~l~v~nLp~~--~---te~~l~~~F~~~G~i~~v~i~~~~~----~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (521)
.++|+|.||-.. + .++||+++|++||.|.+|.|+.+.. ++.++|+|||+|.+.++|.+|++.|||.+|+|+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 468999999422 2 3689999999999999999998864 457789999999999999999999999999999
Q ss_pred EEEEEEcc
Q 009954 365 TLTVRRAT 372 (521)
Q Consensus 365 ~l~v~~~~ 372 (521)
.|.|.|+.
T Consensus 100 ~i~v~~~~ 107 (118)
T 3ue2_A 100 KVVAEVYD 107 (118)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEcC
Confidence 99999985
No 238
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=9e-15 Score=122.70 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=61.2
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||+.|||..|+|++|+|.|+....-
T Consensus 62 ~~L~~~F~~~G~i~~v~i~~~~~~g~~---~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 62 DTLRRVFEKYGRVGDVYIPRDRYTKES---RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp HHHHHHHGGGSCCSEEECCCCSSSSSC---CSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 699999999999999999998766553 57789999999999999999999999999999999876543
No 239
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-14 Score=114.29 Aligned_cols=83 Identities=16% Similarity=0.305 Sum_probs=67.6
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||..+|+++|+++|.+||.|..+. ..+.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~-----~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTP-----KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCC-----EECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-----EEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 467999999999999999999999999864320 11122234567899999999999999999 599999999999
Q ss_pred EEeCCCCCC
Q 009954 252 RVRRPTDYN 260 (521)
Q Consensus 252 ~v~~~~~~~ 260 (521)
.|.++....
T Consensus 79 ~v~~a~~~~ 87 (96)
T 1x5t_A 79 TVSYAFKKD 87 (96)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccC
Confidence 999876543
No 240
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=8.6e-14 Score=124.24 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEccC
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~~ 373 (521)
++|||+|||..+++++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.+ +..|+|+.|.|.+...
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 689999999999999999999999999999999986 6999999999999999999999865 5699999999999875
No 241
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.5e-14 Score=110.98 Aligned_cols=74 Identities=27% Similarity=0.407 Sum_probs=64.6
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHH-HccCc
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGI 244 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~g~ 244 (521)
...++|||+|||..+|+++|+++|.+||.| ..+.+ +.++|||||+|.+.++|.+|+ .|||.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v------------~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPI------------ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 80 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCE------------EEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCe------------eEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 346789999999999999999999999974 44433 455789999999999999999 59999
Q ss_pred eecCceEEEeCCC
Q 009954 245 IFEGVAVRVRRPT 257 (521)
Q Consensus 245 ~~~g~~i~v~~~~ 257 (521)
.|.|+.|.|.+++
T Consensus 81 ~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 81 ELDGRRIRVSGPS 93 (95)
T ss_dssp EETTEEEEEECCS
T ss_pred EECCEEEEEEecC
Confidence 9999999999864
No 242
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.49 E-value=4.8e-14 Score=113.55 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=61.4
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|++||+.|||..|+|+.|+|.++....
T Consensus 21 ~~L~~~F~~~G~i~~v~i~~d~~tg~~---rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 21 TFLKDMCRKYGEVEEVEILLHPRTRKH---LGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred HHHHHHHHhcCCeeEEEEEECCCCCce---eeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 599999999999999999999877654 6889999999999999999999999999999999987543
No 243
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=107.36 Aligned_cols=74 Identities=23% Similarity=0.417 Sum_probs=65.9
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||..+|+++|+++|.+||. |..+.+. ++||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGR------------VIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45678999999999999999999999997 6666665 569999999999999999 69999999999
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|.|.++...
T Consensus 73 l~v~~a~~~ 81 (90)
T 2dnp_A 73 INVELSTKG 81 (90)
T ss_dssp CEEEESCCC
T ss_pred EEEEECCCC
Confidence 999987654
No 244
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.7e-14 Score=117.39 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=69.4
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCC--CCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCcee
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG--PGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~--~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~ 246 (521)
.....++|||+|||..+|+++|+++|.+||.|....... .+..+.+..++.++|||||+|.+.++|.+|+ .||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999864110000 0001122233556899999999999999999 5999999
Q ss_pred cCceEEEeCCCCCC
Q 009954 247 EGVAVRVRRPTDYN 260 (521)
Q Consensus 247 ~g~~i~v~~~~~~~ 260 (521)
.|+.|.|.++....
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999876544
No 245
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.3e-13 Score=109.28 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=66.2
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHH--HHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQV--MTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
....++|||+|||..+|+++|+++|.+| |. |..+.+ .+|||||+|.+.++|.+|+ .|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~------------v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA------------VERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcc------------eEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3457899999999999999999999999 65 555554 4789999999999999999 59999999
Q ss_pred CceEEEeCCCCCC
Q 009954 248 GVAVRVRRPTDYN 260 (521)
Q Consensus 248 g~~i~v~~~~~~~ 260 (521)
|+.|.|.++....
T Consensus 78 g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 78 GSPIEVTLAKPVD 90 (99)
T ss_dssp TEEEEEECCCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999876543
No 246
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=4.1e-14 Score=113.73 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=66.0
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
.....++|||+|||..+|+++|+++|.+||.| ..+.+. +|||||+|.+.++|.+|+ .|||..|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i------------~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPM------------KEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCC------------CEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCE------------EEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 44567899999999999999999999999974 444444 899999999999999999 699999999
Q ss_pred ceEEEeCCCCC
Q 009954 249 VAVRVRRPTDY 259 (521)
Q Consensus 249 ~~i~v~~~~~~ 259 (521)
+.|.|.++...
T Consensus 93 ~~l~V~~a~~~ 103 (108)
T 2jvo_A 93 QPLEVVYSKLP 103 (108)
T ss_dssp EECEEESCSCC
T ss_pred eEEEEEEecCC
Confidence 99999986543
No 247
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=9.1e-14 Score=111.01 Aligned_cols=78 Identities=24% Similarity=0.388 Sum_probs=67.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC----CCCeEEEEecCHHHHHHHH-HccCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH----EKKFAFVEMRTVEEASNAM-ALDGII 245 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~a~~A~-~l~g~~ 245 (521)
....++|||+|||..+|+++|+++|.+||. |..+.+.. ++|||||+|.+.++|.+|+ .||+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~------------v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGK------------ILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSC------------EEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 445689999999999999999999999997 45555433 4899999999999999999 699999
Q ss_pred ecCceEEEeCCCCCC
Q 009954 246 FEGVAVRVRRPTDYN 260 (521)
Q Consensus 246 ~~g~~i~v~~~~~~~ 260 (521)
|.|+.|.|.++....
T Consensus 80 ~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 80 VEGRKIEVNNATARV 94 (103)
T ss_dssp ETTEECEEEECCSSC
T ss_pred ECCEEEEEEEcccCC
Confidence 999999999876543
No 248
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.49 E-value=6.8e-15 Score=113.65 Aligned_cols=80 Identities=11% Similarity=0.319 Sum_probs=64.4
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
....++|||+|||+.+|+++|+++|++||.|..+. .+.+..++.++|||||+|.+.++|.+|+++++..+.|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT------IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEE------EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence 45578999999999999999999999999843210 011111244579999999999999999988999999999
Q ss_pred EEEeCC
Q 009954 251 VRVRRP 256 (521)
Q Consensus 251 i~v~~~ 256 (521)
|.|+++
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999863
No 249
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.49 E-value=3.9e-15 Score=115.73 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=61.2
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHH--HhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G--~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
.+|||+|||.++|+++|+++|++|| .|..+ ..+.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v------~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEI------KFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCE------EEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEE------EEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 3799999999999999999999999 64321 11222225567899999999999999999 799999999999
Q ss_pred EEeCCCCC
Q 009954 252 RVRRPTDY 259 (521)
Q Consensus 252 ~v~~~~~~ 259 (521)
.|.++...
T Consensus 76 ~V~~~~~~ 83 (90)
T 3p5t_L 76 VVTPSNKL 83 (90)
T ss_dssp EECCC---
T ss_pred EEEECCCC
Confidence 99986543
No 250
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8e-14 Score=108.30 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=66.2
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||.++|+++|+++|.+||. |..+.+. +|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGK------------VLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSC------------EEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 4679999999999999999999999997 5555555 899999999999999999 799999999999
Q ss_pred EEeCCCCCC
Q 009954 252 RVRRPTDYN 260 (521)
Q Consensus 252 ~v~~~~~~~ 260 (521)
.|.++....
T Consensus 73 ~v~~a~~~~ 81 (90)
T 2dnq_A 73 NVEASKNKS 81 (90)
T ss_dssp EEECSSCCC
T ss_pred EEEECCCCC
Confidence 999876544
No 251
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=8.9e-14 Score=111.94 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=67.3
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-------cCCCCeEEEEecCHHHHHHHH-Hc-
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-------NHEKKFAFVEMRTVEEASNAM-AL- 241 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-------~~~~g~afV~f~~~~~a~~A~-~l- 241 (521)
....++|||+|||..+|+++|+++|.+||. |..+.+ +.++|||||+|.+.++|.+|+ .|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 79 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGE------------LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALC 79 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCC------------eEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhc
Confidence 345789999999999999999999999998 444444 345899999999999999999 68
Q ss_pred cCceecCceEEEeCCCCCC
Q 009954 242 DGIIFEGVAVRVRRPTDYN 260 (521)
Q Consensus 242 ~g~~~~g~~i~v~~~~~~~ 260 (521)
|+..|.|+.|.|.++....
T Consensus 80 ~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 80 HSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp TCCBSSSCBCEEEECCCCC
T ss_pred cCCeECCCEEEEEeCCCCC
Confidence 9999999999999876543
No 252
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.48 E-value=7.1e-14 Score=118.30 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=67.6
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
.....++|||+|||..+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVK------IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEE------EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345678999999999999999999999999843210 0111112345799999999999999999 599999999
Q ss_pred ceEEEeCCCCCC
Q 009954 249 VAVRVRRPTDYN 260 (521)
Q Consensus 249 ~~i~v~~~~~~~ 260 (521)
+.|+|.++....
T Consensus 112 ~~l~v~~a~~~~ 123 (139)
T 1u6f_A 112 KRLKVALAASGH 123 (139)
T ss_dssp CEEEEEESSCCC
T ss_pred eEEEEEECCCCC
Confidence 999999876543
No 253
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-14 Score=115.32 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=67.8
Q ss_pred hccCCeEEEeCCCcc-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-Hcc--Ccee
Q 009954 171 TRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIF 246 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~-~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~--g~~~ 246 (521)
....++|||+|||++ +|+++|+++|.+||. |.++.+..++|||||+|.+.++|..|+ .|+ +..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGK------------IKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 345789999999998 999999999999998 667777788999999999999999999 565 5669
Q ss_pred cCceEEEeCCCCCC
Q 009954 247 EGVAVRVRRPTDYN 260 (521)
Q Consensus 247 ~g~~i~v~~~~~~~ 260 (521)
.|++|.|.++....
T Consensus 90 ~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 90 QGRCVKVDLSEKYK 103 (112)
T ss_dssp SSSCCEEEEECSCS
T ss_pred CCEEEEEEECcccc
Confidence 99999999876544
No 254
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=8.9e-14 Score=114.09 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=65.0
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHH-HccC
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDG 243 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~g 243 (521)
....++|||+|||.++|+++|+++|.+||.| ..+.+ +.++|||||+|.+.++|.+|+ .|||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNV------------ISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEE------------EEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE------------EEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC
Confidence 4457899999999999999999999999984 44443 456899999999999999999 6999
Q ss_pred ceecCceEEEeCC
Q 009954 244 IIFEGVAVRVRRP 256 (521)
Q Consensus 244 ~~~~g~~i~v~~~ 256 (521)
..|.|+.|+|.++
T Consensus 105 ~~~~g~~l~V~~a 117 (118)
T 2khc_A 105 FQVGTKRLKVQLK 117 (118)
T ss_dssp CEETTEECCEEEC
T ss_pred CEECCEEEEEEec
Confidence 9999999999875
No 255
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.48 E-value=2.4e-14 Score=118.64 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=68.8
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecC
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 248 (521)
......++|||+|||..+|+++|+++|.+||.|..+. .+.+...+.++|||||+|.+.++|.+|++|||..|.|
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 104 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRIT------ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRG 104 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEE------EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECC
Confidence 3445678999999999999999999999999853210 0111123556899999999999999999999999999
Q ss_pred ceEEEeCCCCC
Q 009954 249 VAVRVRRPTDY 259 (521)
Q Consensus 249 ~~i~v~~~~~~ 259 (521)
+.|.|.++...
T Consensus 105 ~~l~V~~a~~~ 115 (124)
T 2jwn_A 105 RTIKVLPKRTN 115 (124)
T ss_dssp EECEEEESSCC
T ss_pred eEEEEEECCCC
Confidence 99999986643
No 256
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.48 E-value=1.3e-14 Score=112.69 Aligned_cols=81 Identities=23% Similarity=0.400 Sum_probs=66.2
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceE
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
...++|||+|||..+|+++|+++|++||.|..+. .+.+...+.++|||||+|.+.++|.+|+.|||..+.|+.|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l 77 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVT------ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 77 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEE------EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEEC
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEE
Confidence 3467999999999999999999999999843210 0111123456899999999999999999999999999999
Q ss_pred EEeCCCC
Q 009954 252 RVRRPTD 258 (521)
Q Consensus 252 ~v~~~~~ 258 (521)
.|.++..
T Consensus 78 ~V~~a~~ 84 (89)
T 3ucg_A 78 KVIPKRT 84 (89)
T ss_dssp EEEETTT
T ss_pred EEEEccC
Confidence 9998654
No 257
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=3.7e-14 Score=114.67 Aligned_cols=75 Identities=21% Similarity=0.160 Sum_probs=69.0
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||+.+|+++|+++|.+||. |..+.+..++|||||+|.+.++|..|+ .|||..|.|+.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGS------------LGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 34679999999999999999999999997 777888889999999999999999999 69999999999
Q ss_pred EEEeCCCC
Q 009954 251 VRVRRPTD 258 (521)
Q Consensus 251 i~v~~~~~ 258 (521)
|.|.|+..
T Consensus 76 l~V~~a~~ 83 (111)
T 1whx_A 76 LYLEWAPI 83 (111)
T ss_dssp CEEEEEET
T ss_pred EEEEECCC
Confidence 99998654
No 258
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=111.68 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=67.1
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC---
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG--- 248 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--- 248 (521)
..++|||+|||+++|+++|+++|.+||. |..+.+... |||||+|.+.++|++|| .||+..|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSC------------EEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 3679999999999999999999999997 666666665 99999999999999999 599999999
Q ss_pred --ceEEEeCCCCCC
Q 009954 249 --VAVRVRRPTDYN 260 (521)
Q Consensus 249 --~~i~v~~~~~~~ 260 (521)
+.|+|.++....
T Consensus 81 ~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 81 ETAYIRVKVDGPRS 94 (108)
T ss_dssp CEEEEEEEESSCCS
T ss_pred cceEEEEEeCCCCC
Confidence 999999876644
No 259
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.4e-14 Score=112.26 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=65.6
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCCeEEEEecCHHHHHHHHHccCcee
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGIIF 246 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~A~~l~g~~~ 246 (521)
...++|||+|||+++|+++|+++|++||.| ..+.+ +.++|||||+|.+.++|..|+.+++..|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v------------~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~ 76 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQV------------LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 76 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCE------------EEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCE------------EEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEE
Confidence 345789999999999999999999999984 44433 5578999999999999999999999999
Q ss_pred cCceEEEeCCCC
Q 009954 247 EGVAVRVRRPTD 258 (521)
Q Consensus 247 ~g~~i~v~~~~~ 258 (521)
.|+.|.|.++..
T Consensus 77 ~gr~l~V~~~~~ 88 (103)
T 1s79_A 77 KETDLLILFKDD 88 (103)
T ss_dssp TTTTCEEEEHHH
T ss_pred CCEEEEEEEchH
Confidence 999999987554
No 260
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.5e-13 Score=110.03 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCC
Q 009954 291 AEGPDRVFVGGLPYYFT-----------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359 (521)
Q Consensus 291 ~~~~~~l~v~nLp~~~t-----------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~ 359 (521)
....++|+|.||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34557899999954432 5899999999999999966 443 37999999999999999999999999
Q ss_pred eeCCeEEEEEEccCC
Q 009954 360 KMGDKTLTVRRATAS 374 (521)
Q Consensus 360 ~~~g~~l~v~~~~~~ 374 (521)
.|.|+.|.|.|+.+.
T Consensus 88 ~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 88 WFGGRQITAQAWDGT 102 (112)
T ss_dssp EETTEECEEEECCSC
T ss_pred EECCcEEEEEEeCCC
Confidence 999999999999763
No 261
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-14 Score=114.97 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=66.9
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
......++|||+|||..+|+++|+++|++||.|..+. +....+.++|||||+|.+.++|.+|+ .|||..|.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--------i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE--------IIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEE--------ECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEE--------EEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3445678999999999999999999999999854311 11111336899999999999999999 59999999
Q ss_pred CceEEEeCCCC
Q 009954 248 GVAVRVRRPTD 258 (521)
Q Consensus 248 g~~i~v~~~~~ 258 (521)
|+.|.|.++..
T Consensus 96 g~~l~V~~a~~ 106 (109)
T 2err_A 96 GRKIEVNNATA 106 (109)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEECCC
Confidence 99999998654
No 262
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=2.4e-14 Score=113.32 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=67.9
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||+.+|+++|+++|.+||.|..+ ..+.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTT------CEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccce------EEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 45789999999999999999999999986532 22444455667899999999999999999 799999999999
Q ss_pred EEeCCC
Q 009954 252 RVRRPT 257 (521)
Q Consensus 252 ~v~~~~ 257 (521)
+|.++.
T Consensus 88 ~V~~a~ 93 (98)
T 2cqp_A 88 KLVLGS 93 (98)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 999864
No 263
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.47 E-value=1.2e-13 Score=112.75 Aligned_cols=79 Identities=24% Similarity=0.373 Sum_probs=67.6
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHH-HccC
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDG 243 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~g 243 (521)
....++|||+|||..+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|+ .||+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 79 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRI------------SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 79 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCE------------EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3457899999999999999999999999984 44433 344789999999999999999 6999
Q ss_pred ceecCceEEEeCCCCCCc
Q 009954 244 IIFEGVAVRVRRPTDYNP 261 (521)
Q Consensus 244 ~~~~g~~i~v~~~~~~~~ 261 (521)
..|.|+.|.|.++.....
T Consensus 80 ~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 80 QWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp CEETTEECEEEESSCCCC
T ss_pred CEECCEEEEEEEccCCCC
Confidence 999999999999776543
No 264
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.47 E-value=3.9e-14 Score=113.83 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=67.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCcee---
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF--- 246 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--- 246 (521)
....++|||+|||..+|+++|+++|.+||.|..+.+ +.+..++.++|||||+|.+.++|.+|+ .||+..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTV------LKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEEC------CCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE------EecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 345678999999999999999999999998533211 112223557899999999999999999 6999987
Q ss_pred cCceEEEeCCCCCC
Q 009954 247 EGVAVRVRRPTDYN 260 (521)
Q Consensus 247 ~g~~i~v~~~~~~~ 260 (521)
.|+.|.|.++....
T Consensus 84 ~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 84 MNRPIQVKPADSES 97 (106)
T ss_dssp CSSCCEEEECCCCS
T ss_pred CCceEEEEECCccc
Confidence 88999999876543
No 265
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=7.3e-14 Score=110.47 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=66.1
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE---ecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~---~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
+.++|||+|||..+|+++|+++|.+||.|..+. .+.+.. ++.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCT------ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467899999999999999999999999853211 011111 2256789999999999999999 599999999
Q ss_pred ceEEEeCCCCCC
Q 009954 249 VAVRVRRPTDYN 260 (521)
Q Consensus 249 ~~i~v~~~~~~~ 260 (521)
+.|.|.++....
T Consensus 78 ~~l~V~~a~~~~ 89 (98)
T 2cpf_A 78 HKLEVRISERAT 89 (98)
T ss_dssp EECEEECSSCSS
T ss_pred eEEEEEEccCCC
Confidence 999999876543
No 266
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=112.75 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=66.9
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||..+|+++|+++|++||.|..+.+ +.+ ..+.++|||||+|.+.++|++|+ .|||..|.|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~-~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLL------IKD-RTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEE------ECS-TTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE------EEC-CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 44679999999999999999999999998532110 111 13456799999999999999999 69999999999
Q ss_pred EEEeCCCCCC
Q 009954 251 VRVRRPTDYN 260 (521)
Q Consensus 251 i~v~~~~~~~ 260 (521)
|.|.++....
T Consensus 78 l~V~~a~~~~ 87 (116)
T 2fy1_A 78 IKVEQAKKPS 87 (116)
T ss_dssp CEEEECCCSS
T ss_pred EEEEECCCCC
Confidence 9999876544
No 267
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.47 E-value=6.3e-14 Score=107.09 Aligned_cols=72 Identities=18% Similarity=0.403 Sum_probs=63.2
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
.+|||+|||..+|+++|+++|.+||.| ..+.+ +.++|||||+|.+.++|..|+ .|||..+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i------------~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSY------------LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTE------------EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCe------------eEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 579999999999999999999999984 34333 345799999999999999999 59999999
Q ss_pred CceEEEeCCCC
Q 009954 248 GVAVRVRRPTD 258 (521)
Q Consensus 248 g~~i~v~~~~~ 258 (521)
|+.|.|.++..
T Consensus 70 g~~l~v~~a~~ 80 (83)
T 3md1_A 70 GRPLRINWAAK 80 (83)
T ss_dssp TEECEEEECCC
T ss_pred CcEEEEEecCc
Confidence 99999998754
No 268
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.47 E-value=3.4e-13 Score=107.61 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=66.4
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||+.+|+++|+++|.+||. |..+.+. ++||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGK------------LERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 4678999999999999999999999997 5566554 679999999999999999 599999999999
Q ss_pred EEeCCCCCCc
Q 009954 252 RVRRPTDYNP 261 (521)
Q Consensus 252 ~v~~~~~~~~ 261 (521)
.|.++.....
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 9998765443
No 269
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=111.45 Aligned_cols=79 Identities=11% Similarity=0.262 Sum_probs=63.8
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHHHcc
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALD 242 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~l~ 242 (521)
......++|||+|||..+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|+..+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i------------~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEV------------KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCE------------EEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCe------------EEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 344567899999999999999999999999984 44443 456899999999999999999766
Q ss_pred CceecCceEEEeCCCCC
Q 009954 243 GIIFEGVAVRVRRPTDY 259 (521)
Q Consensus 243 g~~~~g~~i~v~~~~~~ 259 (521)
+..|.|+.|.|.++...
T Consensus 88 ~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 88 RHELDSKTIDPKVAFPR 104 (109)
T ss_dssp CEEETTEEEEEEECCCC
T ss_pred CCcCCCEEEEEEEccCC
Confidence 79999999999986543
No 270
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=7e-14 Score=127.34 Aligned_cols=77 Identities=21% Similarity=0.389 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee-
Q 009954 292 EGPDRVFVGGLPYYF---------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM- 361 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~- 361 (521)
...++|||+||+..+ ++++|+++|++||.|.+|.|+.. +|||||+|.+.++|+.|+++|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 345799999999998 79999999999999999999864 79999999999999999999999999
Q ss_pred -----------CCeEEEEEEccCC
Q 009954 362 -----------GDKTLTVRRATAS 374 (521)
Q Consensus 362 -----------~g~~l~v~~~~~~ 374 (521)
.|+.|.|.||...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccccCCCCEEEEEEccCC
Confidence 8999999999763
No 271
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.47 E-value=2.1e-14 Score=107.39 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=62.7
Q ss_pred eEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEEEeC
Q 009954 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255 (521)
Q Consensus 176 ~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~v~~ 255 (521)
+|||+|||+.+|+++|+++|++||.|..+.+ +.+..++.++|||||+|.+.++|.+|+++++..+.|+.|.|++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL------PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECC------CCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------EecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 5999999999999999999999998543321 2223346678999999999999999998899999999999975
No 272
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.1e-14 Score=116.42 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=68.1
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCc
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 249 (521)
.....++|||+|||..+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+|+..++..|.|+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~ 96 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV------VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGR 96 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEE------EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCE
Confidence 345568999999999999999999999999853211 01111234568999999999999999996699999999
Q ss_pred eEEEeCCCCCC
Q 009954 250 AVRVRRPTDYN 260 (521)
Q Consensus 250 ~i~v~~~~~~~ 260 (521)
.|.|.++....
T Consensus 97 ~l~V~~a~~~~ 107 (116)
T 1x4b_A 97 VVEPKRAVARE 107 (116)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCc
Confidence 99999876543
No 273
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=110.30 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=66.5
Q ss_pred cCCeEEE--eCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCcee---
Q 009954 173 HARRVYV--GGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF--- 246 (521)
Q Consensus 173 ~~~~l~v--~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--- 246 (521)
+.++||| +||+..+|+++|+++|++||. |..+.+..++|||||+|.+.++|.+|+ .|||..+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~------------v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 91 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDD 91 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSC------------EEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccc
Confidence 4678999 779999999999999999997 677777778999999999999999999 7999988
Q ss_pred --cCceEEEeCCCCC
Q 009954 247 --EGVAVRVRRPTDY 259 (521)
Q Consensus 247 --~g~~i~v~~~~~~ 259 (521)
.|++|.|.++...
T Consensus 92 lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 92 LGQKITLYLNFVEKV 106 (114)
T ss_dssp TSCEEECEEEEESCC
T ss_pred cCCCcEEEEEecccC
Confidence 6789999886543
No 274
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.46 E-value=2.3e-14 Score=112.70 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=66.5
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~ 252 (521)
.++|||+|||+.+|+++|+++|.+||.|..+ ..+.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTC------CEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccce------EEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 5789999999999999999999999986532 22344445567899999999999999999 6999999999999
Q ss_pred EeCCC
Q 009954 253 VRRPT 257 (521)
Q Consensus 253 v~~~~ 257 (521)
|.++.
T Consensus 89 v~~a~ 93 (95)
T 2ek1_A 89 LSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 98754
No 275
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.6e-14 Score=119.66 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=69.0
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceE
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
...++|||+|||+.+|+++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|.+||.||+..|.|+.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~------~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSI------YIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 96 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTC------EEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceE------EEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 4467999999999999999999999999865421 2444456677899999999999999999999999999999
Q ss_pred EEeCCCC
Q 009954 252 RVRRPTD 258 (521)
Q Consensus 252 ~v~~~~~ 258 (521)
.|.++..
T Consensus 97 ~V~~a~~ 103 (124)
T 1wel_A 97 QVHPITK 103 (124)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9987643
No 276
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5e-13 Score=104.73 Aligned_cols=63 Identities=21% Similarity=0.364 Sum_probs=58.3
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++|++.|||..|+|++|+|.|+
T Consensus 31 ~~l~~~f~~~G~v~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 31 NDLYRIFSKYGKVVKVTIMKDKDTRKS---KGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp HHHHHHTTTTSCEEEEEECCCSSSCCC---TTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCc---ccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 599999999999999999998766554 578899999999999999999999999999999986
No 277
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4.6e-13 Score=108.33 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=62.4
Q ss_pred HHHH---HhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 444 EDMR---EECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 444 ~dl~---~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
++|+ ++|++||+|..|.|+++..++.....+|+|||+|.+.++|++||+.|||..|+|++|+|.|+....
T Consensus 30 ~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 30 PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 4888 999999999999999987655444456899999999999999999999999999999999987764
No 278
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=109.32 Aligned_cols=77 Identities=18% Similarity=0.344 Sum_probs=66.1
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCCeEEEEecCHHHHHHHH-HccCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGI 244 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~A~-~l~g~ 244 (521)
....++|||+|||..+|+++|+++|.+||.| ..+.+ +.++|||||+|.+.++|.+|+ .||+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTV------------KDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCE------------EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCe------------EEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 3456789999999999999999999999974 44433 345699999999999999999 79999
Q ss_pred eecCceEEEeCCCCC
Q 009954 245 IFEGVAVRVRRPTDY 259 (521)
Q Consensus 245 ~~~g~~i~v~~~~~~ 259 (521)
.|.|+.|.|.++...
T Consensus 82 ~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 82 TIKENIIKVAISNSG 96 (100)
T ss_dssp ESSSCEEEEEECCCC
T ss_pred EECCEEEEEEECCCC
Confidence 999999999986543
No 279
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.46 E-value=1.9e-13 Score=108.34 Aligned_cols=86 Identities=13% Similarity=0.208 Sum_probs=70.9
Q ss_pred eEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCee
Q 009954 420 KVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF 499 (521)
Q Consensus 420 ~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~ 499 (521)
+++.+.|++.. .+..+.+++++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|++||+.|||..|
T Consensus 7 ~~vfV~nLp~v----~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~---kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 7 QYIVVNGAPVI----PSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKT---KGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp GEEEEESCCCC----BGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEE---CSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cEEEEeCCCcC----ChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCcc---ceEEEEEECCHHHHHHHHHHhCCccc
Confidence 34555555332 223457788999999999999999999998876654 68889999999999999999999999
Q ss_pred CC-cEEEEEEcCCC
Q 009954 500 GG-NTVNAFYYPED 512 (521)
Q Consensus 500 ~g-r~l~v~~~~~~ 512 (521)
+| +.|+|.++.+.
T Consensus 80 ~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 80 DLKHRLFLYTMKDV 93 (100)
T ss_dssp SSSCBCEEEESHHH
T ss_pred CCCeEEEEEECchh
Confidence 99 99999998653
No 280
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=107.00 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=63.4
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cC-CCCeEEEEecCHHHHHHHH-HccCce
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NH-EKKFAFVEMRTVEEASNAM-ALDGII 245 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~-~~g~afV~f~~~~~a~~A~-~l~g~~ 245 (521)
.++|||+|||.++|+++|+++|.+||.| ..+.+ +. ++|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKI------------KMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCE------------EEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCE------------EEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe
Confidence 5789999999999999999999999974 44443 22 7899999999999999999 599999
Q ss_pred ecCceEEEeCCC
Q 009954 246 FEGVAVRVRRPT 257 (521)
Q Consensus 246 ~~g~~i~v~~~~ 257 (521)
+.|+.|.|.++.
T Consensus 72 ~~g~~l~v~~a~ 83 (88)
T 4a8x_A 72 IDGQEITATAVL 83 (88)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCeEEEEEECC
Confidence 999999999754
No 281
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.2e-13 Score=110.38 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=67.1
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHH-Hcc--
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALD-- 242 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~-- 242 (521)
...++|||+|||+.+|+++|+++|.+||. |..+.+ +.++|||||+|.+.++|.+|+ .||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~ 80 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGD------------LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLE 80 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccc
Confidence 45679999999999999999999999997 444444 456899999999999999999 699
Q ss_pred ----CceecCceEEEeCCCCCC
Q 009954 243 ----GIIFEGVAVRVRRPTDYN 260 (521)
Q Consensus 243 ----g~~~~g~~i~v~~~~~~~ 260 (521)
+..|.|+.|.|.++....
T Consensus 81 ~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 81 AEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp TTTCCEESSSCEEEEECCCCCC
T ss_pred cccCCcEEcCEEEEEEECCCCc
Confidence 999999999999876543
No 282
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.46 E-value=8.7e-14 Score=111.56 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=66.0
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCCeEEEEecCHHHHHHHH-HccCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGII 245 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~A~-~l~g~~ 245 (521)
...++|||+|||..+|+++|+++|.+||.| ..+.+ +.++|||||+|.+.++|.+|+ .||+..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 80 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVI------------DECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 80 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCE------------EEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCc
Confidence 457899999999999999999999999984 33333 344799999999999999999 699999
Q ss_pred ecC---ceEEEeCCCCCC
Q 009954 246 FEG---VAVRVRRPTDYN 260 (521)
Q Consensus 246 ~~g---~~i~v~~~~~~~ 260 (521)
+.| +.|.|.++....
T Consensus 81 ~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 81 TMPGASSSLVVKFADTDK 98 (105)
T ss_dssp CCTTCSSCCEEEESCSSC
T ss_pred cCCCCCccEEEEECccCc
Confidence 998 999999876543
No 283
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=6.8e-14 Score=111.74 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=67.3
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEE----ecCCCCeEEEEecCHHHHHHHH-HccCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY----INHEKKFAFVEMRTVEEASNAM-ALDGII 245 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~----~~~~~g~afV~f~~~~~a~~A~-~l~g~~ 245 (521)
....++|||+|||+.+|+++|+++|.+||.| ..+. .+.++|||||+|.+.++|.+|+ .||+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTI------------TSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 79 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCE------------EEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE------------EEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3457899999999999999999999999984 3333 3456899999999999999999 699999
Q ss_pred ecCceEEEeCCCCCC
Q 009954 246 FEGVAVRVRRPTDYN 260 (521)
Q Consensus 246 ~~g~~i~v~~~~~~~ 260 (521)
|.|+.|.|.++....
T Consensus 80 ~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 80 VATKPLYVALAQRKE 94 (103)
T ss_dssp SSSSBCEEEECSSCC
T ss_pred eCCcEEEEEEecccc
Confidence 999999999876544
No 284
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.46 E-value=7.8e-14 Score=109.62 Aligned_cols=75 Identities=31% Similarity=0.461 Sum_probs=64.9
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCCeEEEEecCHHHHHHHH-HccCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGI 244 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~A~-~l~g~ 244 (521)
....++|||+|||+.+++++|+++|.+||.| ..+.+ +.++|||||+|.+.++|.+|+ .||+.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i------------~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPL------------TKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCE------------EEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCE------------EEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 3456799999999999999999999999974 44443 344789999999999999999 59999
Q ss_pred eecCceEEEeCCC
Q 009954 245 IFEGVAVRVRRPT 257 (521)
Q Consensus 245 ~~~g~~i~v~~~~ 257 (521)
.|.|+.|.|.++.
T Consensus 81 ~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 81 RLYGRPINVSGPS 93 (95)
T ss_dssp EETTEECEEECCC
T ss_pred EECCCEEEEEEcC
Confidence 9999999999864
No 285
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=4.4e-14 Score=112.38 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=67.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....++|||+|||..+|+++|+++|.+||.|. +.....+.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~----------~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----------VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE----------CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE----------EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 34578999999999999999999999998752 222245677999999999999999999 5999999999
Q ss_pred eEEEeCCCCC
Q 009954 250 AVRVRRPTDY 259 (521)
Q Consensus 250 ~i~v~~~~~~ 259 (521)
.|.|.++...
T Consensus 82 ~l~v~~a~~~ 91 (101)
T 2fc9_A 82 AIRLELQGPR 91 (101)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEcCCC
Confidence 9999987654
No 286
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.46 E-value=5.8e-15 Score=117.20 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=64.6
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEE-EecCCCCeEEEEecCHHHHHHHHHccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV-YINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~-~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 249 (521)
....++|||+|||.++|+++|+++|..|| |..+.+ +.+. ..+.++|||||+|.+.++|.+|+.|+|..|.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~ 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL------PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNR 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEEC------SCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE------EecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCe
Confidence 44568999999999999999999999998 643211 1111 245578999999999999999999999999999
Q ss_pred eEEEeCCCC
Q 009954 250 AVRVRRPTD 258 (521)
Q Consensus 250 ~i~v~~~~~ 258 (521)
.|.|.++..
T Consensus 89 ~l~V~~a~~ 97 (100)
T 2j76_E 89 RIRVDVADQ 97 (100)
T ss_dssp CCCCEECCC
T ss_pred EEEEEeccC
Confidence 999998654
No 287
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8e-14 Score=113.57 Aligned_cols=76 Identities=29% Similarity=0.412 Sum_probs=66.8
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHHHccC
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDG 243 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~l~g 243 (521)
.....++|||+|||..+|+++|+++|..||. |..+.+ +.++|||||+|.+.++|.+|+.||+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 88 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGK------------VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG 88 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC
Confidence 3456789999999999999999999999997 444444 5678999999999999999999999
Q ss_pred ceecCceEEEeCCC
Q 009954 244 IIFEGVAVRVRRPT 257 (521)
Q Consensus 244 ~~~~g~~i~v~~~~ 257 (521)
..|.|+.|.|.++.
T Consensus 89 ~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 89 QRLLGVPIIVQASQ 102 (114)
T ss_dssp EEETTEEEEEEEHH
T ss_pred CEeCCeEEEEEecC
Confidence 99999999998754
No 288
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=107.04 Aligned_cols=67 Identities=19% Similarity=0.312 Sum_probs=61.5
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||+.|||..|+|+.|+|.|+.+..
T Consensus 20 ~~l~~~f~~~G~v~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 20 DMLRGIFEPFGKIDNIVLMKDSDTGRS---KGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HHHHHHHTTTSCEEEEEEECCSSSCCC---CSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred HHHHHHHHhcCCEeEEEEeecCCCCce---eeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 599999999999999999998766654 6899999999999999999999999999999999987754
No 289
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=4.1e-13 Score=117.99 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=64.9
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||+.+|+++|+++|.+||.|..+.+ +.+. .+.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i------~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV------DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEE------CCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------EECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 3578999999999999999999999998532110 1111 3557899999999999999999 599999999999
Q ss_pred EEeCCCC
Q 009954 252 RVRRPTD 258 (521)
Q Consensus 252 ~v~~~~~ 258 (521)
+|.++..
T Consensus 160 ~V~~a~~ 166 (177)
T 2f3j_A 160 DIQLVAS 166 (177)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9998654
No 290
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=106.29 Aligned_cols=65 Identities=12% Similarity=0.345 Sum_probs=59.2
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~ 511 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|+.|++.|||..|+|+.|+|.|+..
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 21 AAIAAAFAPFGRISDARVVKDMATGKS---KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCE---EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 599999999999999999998766553 68999999999999999999999999999999999865
No 291
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.5e-14 Score=116.40 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=66.6
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHh-hcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTA-IGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~-~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
...++|||+|||+.+|+++|+++|..||.| ..+. ++.+. .+.++|||||+|.+.++|.+||++|+..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~------i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH------VLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGRE 85 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEE------ECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEE------EEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeE
Confidence 456899999999999999999999999875 2211 11222 466899999999999999999977999999999
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999986543
No 292
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.3e-14 Score=110.07 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=64.0
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccC-ceecCce
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG-IIFEGVA 250 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g-~~~~g~~ 250 (521)
..++|||+|||.++|+++|+++|.+||.++.. +.. .++|||||+|.+.++|.+|+ .||| ..|.|+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~--------~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG--------QVL----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS--------CEE----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE--------EEE----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 45789999999999999999999999973211 111 35899999999999999999 6999 9999999
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|.|.++...
T Consensus 75 l~v~~a~~~ 83 (93)
T 2cqh_A 75 MEVDYSVSK 83 (93)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999987654
No 293
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=5.1e-14 Score=112.02 Aligned_cols=72 Identities=13% Similarity=0.259 Sum_probs=62.9
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEE
Q 009954 299 VGGLPYYFTETQIKELL------------ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (521)
Q Consensus 299 v~nLp~~~te~~l~~~F------------~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (521)
+.||+..+++++|+++| ++||.|.+|.|+.+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667776666555 999999999999885 58899999999999999999999999999999999
Q ss_pred EEEEc
Q 009954 367 TVRRA 371 (521)
Q Consensus 367 ~v~~~ 371 (521)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 294
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.44 E-value=3.3e-14 Score=122.14 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=63.9
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHH--HhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
...++|||+|||+.+|+++|+++|..|| .|..+. .+.+..++.++|||||+|.+.++|.+|| .|||..|.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~------i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELK------FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEE------EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568999999999999999999999999 632210 0111123556899999999999999999 689999999
Q ss_pred ceEEEeCCCC
Q 009954 249 VAVRVRRPTD 258 (521)
Q Consensus 249 ~~i~v~~~~~ 258 (521)
+.|.|.++..
T Consensus 127 r~l~V~~a~~ 136 (156)
T 3n9u_C 127 EKVDVRPATR 136 (156)
T ss_dssp EECEEEECCH
T ss_pred eEeEEEEcCC
Confidence 9999998653
No 295
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.8e-13 Score=107.96 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=62.4
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~ 515 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||+.|||..|+|+.|+|.|+....-.
T Consensus 27 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 27 KVLHAAFIPFGDITDIQIPLDYETEKH---RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp HHHHHHHTTTSCCCCEECCCCSSSCCC---SSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHHHHhhccCCEEEEEEEecCCCCCc---ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 599999999999999999998766654 688999999999999999999999999999999998876543
No 296
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.44 E-value=1.7e-13 Score=125.83 Aligned_cols=100 Identities=32% Similarity=0.506 Sum_probs=86.6
Q ss_pred CcceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCC-CCCccEEEEEecCHHHHHHHHHHHh
Q 009954 417 TLAKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGE-TPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 417 ~~~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~-~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
..+.++.|.+.++.+++.++ +.++|.++|++||.|..|.|+++..++.. ..++|++||+|.+.++|.+|++.||
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e-----~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDD-----LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTT-----HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccchhhcCCCHHHHHHH-----HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 56678899999998877543 55799999999999999999876544322 2457889999999999999999999
Q ss_pred CCeeCCcEEEEEEcCCCCcccccCCC
Q 009954 496 GRKFGGNTVNAFYYPEDKYFNKDYSA 521 (521)
Q Consensus 496 g~~~~gr~l~v~~~~~~~~~~~~~~~ 521 (521)
|+.|+||+|.|.|+++++|.+++|++
T Consensus 197 gr~~~gr~i~~~~~~~~~f~~~~~~~ 222 (222)
T 3dxb_A 197 GRWFAGRKVVAEVYDQERFDNSDLSA 222 (222)
T ss_dssp TCBSSSSBCEEEECCHHHHHTTCCCC
T ss_pred CceECCeEEEEEEcCHHHhhhcccCC
Confidence 99999999999999999999999985
No 297
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=102.38 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=60.4
Q ss_pred EEEeCCCccCcHHH----HHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 177 VYVGGLPPLANEQA----IATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 177 l~v~nlp~~~t~~~----l~~~f~~~G-~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
|||+|||..+++++ |+++|.+|| . |+++ + .|+|||+|.+.++|+.|+ .|+|..+.|++
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~------------Vl~V-t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGK------------VLSI-T---GCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCC------------EEEC-C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCe------------eEEE-e---cCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 99999999999988 558999995 7 5555 2 299999999999999999 79999999999
Q ss_pred EEEeCCCCCCc
Q 009954 251 VRVRRPTDYNP 261 (521)
Q Consensus 251 i~v~~~~~~~~ 261 (521)
|+|.+++....
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999876554
No 298
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=3.5e-14 Score=116.20 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=65.6
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHH---hhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 248 (521)
...++|||+|||+.+|+++|+++|..||. |..+. .+.+ ..+.++|||||+|.+.++|.+||++|+..|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~------i~~~-~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g 87 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVH------FIYT-REGRQSGEAFVELESEDDVKLALKKDRESMGH 87 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEE------EEEC-SSSCEEEEEEEEBSSHHHHHHHGGGTTEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEE------EEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence 45678999999999999999999999987 43311 1122 22567899999999999999999999999999
Q ss_pred ceEEEeCCC
Q 009954 249 VAVRVRRPT 257 (521)
Q Consensus 249 ~~i~v~~~~ 257 (521)
+.|+|.++.
T Consensus 88 r~i~V~~a~ 96 (118)
T 2db1_A 88 RYIEVFKSH 96 (118)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEECC
Confidence 999998764
No 299
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.9e-13 Score=105.97 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=67.4
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|| .+|+++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCC------------EEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 35679999996 8999999999999997 777888899999999999999999999 79999999999
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|.|.++...
T Consensus 79 l~v~~a~~~ 87 (97)
T 1x5p_A 79 LKVNIARKQ 87 (97)
T ss_dssp EEEECCSSC
T ss_pred EEEEECCCC
Confidence 999987654
No 300
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=3.6e-13 Score=106.66 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=62.0
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||..|||..|+|+.|+|.|+....-
T Consensus 23 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 23 EDLEKLFSAYGPLSELHYPIDSLTKKP---KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp HHHHHHHHTTSCEEEEECCCCTTTCCC---CSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCCc---CeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 599999999999999999998766654 68999999999999999999999999999999999887653
No 301
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.43 E-value=2e-13 Score=104.76 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=57.9
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
++|+++|++||.|..|.|+.+..++.. +|+|||+|.+.++|++|++.|||..|+|++|+|.|+
T Consensus 22 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 22 KVLHAAFIPFGDITDIQIPLDYETEKH---RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHHHHHHGGGSCEEEEECCEETTTTEE---CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHhccCCEEEEEEEECCCCCcc---ccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 599999999999999999988666543 688999999999999999999999999999999986
No 302
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=109.57 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=66.0
Q ss_pred ccCCeEEEeCCCccC------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCc
Q 009954 172 RHARRVYVGGLPPLA------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI 244 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~------t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 244 (521)
...++|||+|||..+ |+++|+++|++||.|..+.+ . ..++.++|||||+|.+.++|.+|+ .|||.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i-------~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY-------P-EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEEC-------C-CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEe-------e-CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 346799999999999 88999999999998533211 0 123467899999999999999999 69999
Q ss_pred eecCc-eEEEeCCCCC
Q 009954 245 IFEGV-AVRVRRPTDY 259 (521)
Q Consensus 245 ~~~g~-~i~v~~~~~~ 259 (521)
.|.|+ .|.|.++...
T Consensus 85 ~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDF 100 (105)
T ss_dssp ECSTTCEEEEECSCCC
T ss_pred ccCCCceEEEEEcchH
Confidence 99998 9999987654
No 303
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.9e-13 Score=108.32 Aligned_cols=77 Identities=18% Similarity=0.334 Sum_probs=65.8
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHH-Hcc
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALD 242 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~ 242 (521)
.....++|||+|||..+|+++|+++|.+||. |..+.+ +.++|||||+|.+.++|++|+ .++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGD------------IEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSC------------EEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------eeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 3455789999999999999999999999998 444444 446799999999999999999 588
Q ss_pred CceecCceEEEeCCCCC
Q 009954 243 GIIFEGVAVRVRRPTDY 259 (521)
Q Consensus 243 g~~~~g~~i~v~~~~~~ 259 (521)
+ .|.|+.|.|.++...
T Consensus 81 ~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 81 P-IIDGRKANVNLAYLG 96 (116)
T ss_dssp C-EETTEECEEEESTTT
T ss_pred C-cCCCEEEEEEEcccC
Confidence 7 899999999987643
No 304
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.43 E-value=3.1e-13 Score=117.85 Aligned_cols=141 Identities=14% Similarity=0.108 Sum_probs=66.8
Q ss_pred EEEcChHHHHHHHHHHcCCeeC--CeEEEEEEccCCCCCchHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCc
Q 009954 341 CVYQDPAVTDIACAALNGLKMG--DKTLTVRRATASGQSKTEQESILAQAQQHIAIQKMALQTSGMNTLGGGMSLFGETL 418 (521)
Q Consensus 341 V~f~~~~~A~~Al~~l~g~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (521)
.+|.+.++|..|+..|++.... |+.+.+.+..... ..... .... .... .....|... .+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~------~~~~~---------~~~~--s~~~-~~~~~~~~~-~~ 71 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA------IHSYE---------RVRN--EDDD-ELEPGPQRS-VE 71 (165)
T ss_dssp -------------------------------------------------------------------------CCCC-C-
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc------ccCcc---------cccc--CCCC-CCCCCCCCC-CC
Confidence 7899999999999999886554 6666555532100 00000 0000 0000 000011111 22
Q ss_pred ceEEEeeCcCCcccCCChHHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCe
Q 009954 419 AKVLCLTEAITADALADDEEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRK 498 (521)
Q Consensus 419 ~~v~~l~~~~~~~~~~~~~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~ 498 (521)
...|.+.|+.... ++++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|+.||..|||..
T Consensus 72 ~~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~v~i~~~~~~g~~---~g~afV~f~~~~~A~~Ai~~l~g~~ 138 (165)
T 1rk8_A 72 GWILFVTSIHEEA----------QEDEIQEKFCDYGEIKNIHLNLDRRTGFS---KGYALVEYETHKQALAAKEALNGAE 138 (165)
T ss_dssp CEEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTTTSSE---EEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHhhcCCCEEEEEEEecCCCCcE---eeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3344444442221 22699999999999999999998766654 6899999999999999999999999
Q ss_pred eCCcEEEEEEcCCCC
Q 009954 499 FGGNTVNAFYYPEDK 513 (521)
Q Consensus 499 ~~gr~l~v~~~~~~~ 513 (521)
|+|+.|.|.|+....
T Consensus 139 ~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 139 IMGQTIQVDWCFVKG 153 (165)
T ss_dssp ETTEECEEEESEECC
T ss_pred ECCEEEEEEEecCCC
Confidence 999999999986543
No 305
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.43 E-value=8.9e-14 Score=108.56 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=65.8
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||..+|+++|+++|.+||.|..+ .+....+.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~--------~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYA--------DIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEE--------EEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE--------EEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 346799999999999999999999999985321 111123446799999999999999999 69999999999
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|.|.++...
T Consensus 78 l~v~~a~~~ 86 (92)
T 2dgv_A 78 IDVRIDRNA 86 (92)
T ss_dssp CCCEECSCC
T ss_pred EEEEEcCCC
Confidence 999986654
No 306
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.43 E-value=4.9e-14 Score=117.83 Aligned_cols=85 Identities=15% Similarity=0.277 Sum_probs=69.8
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCc----e
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI----I 245 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~----~ 245 (521)
....++|||+|||+.+|+++|+++|.+||.|...+ +.++.+..++.++|||||+|.+. +|.+|+ .|||. .
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~----v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN----VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT----EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee----EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 35567999999999999999999999999863210 11234444677899999999999 999999 79999 9
Q ss_pred ecCceEEEeCCCCCC
Q 009954 246 FEGVAVRVRRPTDYN 260 (521)
Q Consensus 246 ~~g~~i~v~~~~~~~ 260 (521)
|.|+.|.|.++....
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999876644
No 307
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=2e-13 Score=110.38 Aligned_cols=72 Identities=22% Similarity=0.414 Sum_probs=64.7
Q ss_pred cCCeEEEeCCCcc-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 173 HARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 173 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
..++|||+|||+. +|+++|+++|.+||. |..+.+ .+|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGR------------VAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSC------------CSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4579999999999 999999999999997 444444 7899999999999999999 79999999999
Q ss_pred EEEeCCCC
Q 009954 251 VRVRRPTD 258 (521)
Q Consensus 251 i~v~~~~~ 258 (521)
|.|.++..
T Consensus 92 l~V~~a~~ 99 (110)
T 1wf1_A 92 LDINMAGE 99 (110)
T ss_dssp CCEEESCC
T ss_pred EEEEECCC
Confidence 99998754
No 308
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.3e-14 Score=114.72 Aligned_cols=85 Identities=31% Similarity=0.434 Sum_probs=67.8
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....++|||+|||..+|+++|+++|.+||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFR------LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEE------EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEE------EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 34568999999999999999999999999853210 0111113445799999999999999999 6999999999
Q ss_pred eEEEeCCCCCCc
Q 009954 250 AVRVRRPTDYNP 261 (521)
Q Consensus 250 ~i~v~~~~~~~~ 261 (521)
.|.|.++.....
T Consensus 79 ~l~v~~a~~~~~ 90 (104)
T 1p1t_A 79 ALRVDNAASEKN 90 (104)
T ss_dssp CBEEEETTCTTH
T ss_pred EEEEEeCCCccc
Confidence 999998765443
No 309
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.9e-13 Score=105.60 Aligned_cols=75 Identities=28% Similarity=0.458 Sum_probs=65.6
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||..+|+++|+++|++||. |..+.+. ++||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGP------------VIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSC------------CCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 44679999999999999999999999997 4455554 569999999999999999 79999999999
Q ss_pred EEEeCCCCCC
Q 009954 251 VRVRRPTDYN 260 (521)
Q Consensus 251 i~v~~~~~~~ 260 (521)
|.|.++....
T Consensus 74 l~V~~a~~~~ 83 (92)
T 2dgt_A 74 MHVQLSTSRL 83 (92)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999876543
No 310
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.4e-13 Score=106.01 Aligned_cols=67 Identities=16% Similarity=0.306 Sum_probs=61.3
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||..|||..|+|+.|+|.|+....
T Consensus 30 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 30 TDLQELFRPFGSISRIYLAKDKTTGQS---KGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHHHTTSTTTCCEEEEEEEECSSSCSE---EEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred HHHHHHHHhCCCeEEEEEeecCCCCce---eeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 599999999999999999998766554 6899999999999999999999999999999999987754
No 311
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=8.8e-14 Score=109.54 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=67.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....++|||+|||..+|+++|+++|..||.|. ++ ...+.++|||||+|.+.++|.+|+ .|+|..|.|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~----------~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIR----------LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEEC----------CE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE----------Ee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34568999999999999999999999998752 22 455677899999999999999999 5999999999
Q ss_pred eEEEeCCCCC
Q 009954 250 AVRVRRPTDY 259 (521)
Q Consensus 250 ~i~v~~~~~~ 259 (521)
.|.|.++...
T Consensus 82 ~l~v~~a~~~ 91 (96)
T 1fjc_A 82 SVSLYYTGEK 91 (96)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEEcCCC
Confidence 9999986543
No 312
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=106.06 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=64.3
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCC-eEEEEecCHHHHHHHHHccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK-FAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g-~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
..++|||+|||..+|+++|+++|.+||. |..+......+ ||||+|.+.++|.+|++||+..|.|+.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l 74 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGP------------VASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRL 74 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSC------------EEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCC------------eEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEE
Confidence 4579999999999999999999999998 44443333222 9999999999999999999999999999
Q ss_pred EEeCCCCCC
Q 009954 252 RVRRPTDYN 260 (521)
Q Consensus 252 ~v~~~~~~~ 260 (521)
.|.++....
T Consensus 75 ~V~~a~~~~ 83 (94)
T 2e5g_A 75 RVRPREQKE 83 (94)
T ss_dssp CCBCSCCSC
T ss_pred EEEECCcCC
Confidence 999765443
No 313
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.42 E-value=4.2e-13 Score=105.53 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=61.7
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++|++.|||..|+|+.|+|.|+.....
T Consensus 17 ~~l~~~F~~~G~i~~v~i~~~~~~g~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 17 EQILDLCSNVGPVINLKMMFDPQTGRS---KGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp HHHHHHHHTTSCEEEEECCBCTTTCCB---CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCcc---ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 599999999999999999998766543 68899999999999999999999999999999999887653
No 314
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=6.2e-13 Score=105.25 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=60.7
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||+ |||..|+|+.|+|.|+....-
T Consensus 25 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 25 TELREYFKKFGVVTEVVMIYDAEKQRP---RGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp HHHHHHHSSSSCEEEEEECCCTTTCSC---CSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCC---CceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcc
Confidence 599999999999999999998766554 6899999999999999999 999999999999999876653
No 315
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.7e-13 Score=108.01 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=61.5
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|.+||+.|||..|+|++|+|.|+....-
T Consensus 27 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 27 QSLEQVFSKYGQISEVVVVKDRETQRS---RGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp HHHHHHHHHHSCCCEEEECCCSSSCSC---CSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred HHHHHHHHhcCCeEEEEEEeCCCCCCc---ccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 599999999999999999998766553 68999999999999999999999999999999999876543
No 316
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.7e-14 Score=114.56 Aligned_cols=84 Identities=17% Similarity=0.293 Sum_probs=66.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
....++|||+|||+.+|+++|+++|.+||.|..+. .+.+..++.++|||||+|.+.++|.+|+..++..|.|+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCV------IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 34568999999999999999999999999843210 011112234578999999999999999955999999999
Q ss_pred EEEeCCCCCC
Q 009954 251 VRVRRPTDYN 260 (521)
Q Consensus 251 i~v~~~~~~~ 260 (521)
|.|.++....
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 9999876543
No 317
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=104.56 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=59.1
Q ss_pred CeEEEeCCCccC------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 175 RRVYVGGLPPLA------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 175 ~~l~v~nlp~~~------t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
++|||+|||..+ |+++|+++|++||.|..+.+ ...++.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i--------~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--------PEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC--------CCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe--------cCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 689999999999 78999999999998433210 0123456899999999999999999 69999999
Q ss_pred Cc-eEEE
Q 009954 248 GV-AVRV 253 (521)
Q Consensus 248 g~-~i~v 253 (521)
|+ +|+|
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 99 8876
No 318
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.42 E-value=2.3e-13 Score=107.38 Aligned_cols=77 Identities=19% Similarity=0.398 Sum_probs=66.8
Q ss_pred ccCCeEEEeCCCccCcHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEe---cCCCCeEEEEecCHHHHHHHH-HccC
Q 009954 172 RHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDG 243 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g 243 (521)
...++|||+|||..+|+++|+ ++|.+||. |..+.+ +.++|||||+|.+.++|..|+ .|||
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~------------i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQ------------ILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSC------------EEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCC------------EEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 346799999999999999999 99999997 445544 367899999999999999999 6999
Q ss_pred ceecCceEEEeCCCCCC
Q 009954 244 IIFEGVAVRVRRPTDYN 260 (521)
Q Consensus 244 ~~~~g~~i~v~~~~~~~ 260 (521)
..+.|+.|.|.++....
T Consensus 74 ~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 74 FPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp CEETTEECEEEECSSCC
T ss_pred CEECCcEEEEEEccCCC
Confidence 99999999999876543
No 319
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=8.8e-13 Score=106.41 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=65.2
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-------cCCCCeEEEEecCHHHHHHHH-Hcc--
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-------NHEKKFAFVEMRTVEEASNAM-ALD-- 242 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-------~~~~g~afV~f~~~~~a~~A~-~l~-- 242 (521)
..++|||+|||..+|+++|+++|.+||.. |..+.+ +.++|||||+|.+.++|..|+ .|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~-----------v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g 75 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEG-----------VLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPG 75 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTT-----------EEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCC-----------ceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCC
Confidence 45789999999999999999999999861 333333 367899999999999999999 585
Q ss_pred CceecCceEEEeCCCCCC
Q 009954 243 GIIFEGVAVRVRRPTDYN 260 (521)
Q Consensus 243 g~~~~g~~i~v~~~~~~~ 260 (521)
+..+.|+.|.|.++....
T Consensus 76 ~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 76 RIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp CSCBTTBCCEEEESCSSC
T ss_pred CceecCCeEEEEEcCCCC
Confidence 589999999999976544
No 320
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3e-13 Score=108.22 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=66.3
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHH-HHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCce-ecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII-FEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g 248 (521)
...++|||+|||..+|+++|+++|.+ ||.|..+. .+.+. .+.++|||||+|.+.++|.+|+ .|++.. |.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~------i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK------VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEE------EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEE------EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 34678999999999999999999999 99843211 01111 3456899999999999999999 599999 999
Q ss_pred ceEEEeCCCCCC
Q 009954 249 VAVRVRRPTDYN 260 (521)
Q Consensus 249 ~~i~v~~~~~~~ 260 (521)
+.|.|.++....
T Consensus 80 ~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 KPVRLSVAIPKA 91 (104)
T ss_dssp SCCCCCBCCCCC
T ss_pred EeEEEEEccCCC
Confidence 999999876543
No 321
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.8e-13 Score=109.56 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=65.3
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCCeEEEEecCHHHHHHHH-HccCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-ALDGII 245 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~A~-~l~g~~ 245 (521)
...++|||+|||..+|+++|+++|.+||.| ..+.+ +.++|||||+|.+.++|.+|+ .||+..
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i------------~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 80 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVV------------VRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQL 80 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCE------------EEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 446799999999999999999999999974 33333 334789999999999999999 599999
Q ss_pred ecCceEEEeCCCCC
Q 009954 246 FEGVAVRVRRPTDY 259 (521)
Q Consensus 246 ~~g~~i~v~~~~~~ 259 (521)
|.|+.|.|.++...
T Consensus 81 ~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 81 LFDRPMHVKMDERA 94 (114)
T ss_dssp ETTEECEEEECSCC
T ss_pred eCCCEEEEEEcccC
Confidence 99999999987543
No 322
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=110.51 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=65.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
....++|||+|||..+|+++|+++|.+||.|..+. .+.+..++.++|||||+|.+.++|.+|+. ++..|.|+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~ 84 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ------VKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRW 84 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEE------EEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeE
Confidence 44567899999999999999999999999843210 01111224557899999999999999996 578999999
Q ss_pred EEEeCCCCCC
Q 009954 251 VRVRRPTDYN 260 (521)
Q Consensus 251 i~v~~~~~~~ 260 (521)
|.|.++....
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cqg_A 85 CDCKLPNSKQ 94 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEEecCCCC
Confidence 9999876543
No 323
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=7e-13 Score=105.78 Aligned_cols=67 Identities=22% Similarity=0.401 Sum_probs=61.1
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||+.|||..|+|+.|+|.|+....
T Consensus 28 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 28 DSLRRVFEKYGRVGDVYIPREPHTKAP---RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHHHHHHTTTSCEEEEECCBCSSSCSB---CSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCCC---CeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 599999999999999999998766553 5888999999999999999999999999999999988654
No 324
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.42 E-value=9.9e-14 Score=107.19 Aligned_cols=73 Identities=23% Similarity=0.361 Sum_probs=64.2
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||+.+|+++|+++|.+| . |..+.+..++|||||+|.+.++|.+|+ .|||..+.|+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~------------v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-D------------LKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-C------------CCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-C------------eEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 45789999999999999999999998 6 344444578999999999999999999 699999999999
Q ss_pred EEeCCCC
Q 009954 252 RVRRPTD 258 (521)
Q Consensus 252 ~v~~~~~ 258 (521)
+|.++..
T Consensus 71 ~V~~a~~ 77 (88)
T 1wg1_A 71 IVQLQPT 77 (88)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998643
No 325
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.41 E-value=4.4e-13 Score=111.30 Aligned_cols=67 Identities=22% Similarity=0.370 Sum_probs=61.3
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||+.|||..|+|++|+|.|+..++
T Consensus 61 ~~L~~~F~~~G~I~~v~i~~d~~tg~~---~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 61 RDLREVFSKYGPIADVSIVYDQQSRRS---RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp HHHHHHHTTTSCEEEEEEECCSSSSCC---CCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCcc---ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 599999999999999999998766554 6889999999999999999999999999999999987764
No 326
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.9e-14 Score=108.60 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=64.8
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceE
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
...++|||+|||..+|+++|+++|..| .|..+. .+.+ ..+.++|||||+|.+.++|.+|+.||+..|.|+.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~------i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIR------IVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEE------EEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEE------EEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEE
Confidence 346799999999999999999999998 643210 1111 23456899999999999999999999999999999
Q ss_pred EEeCCCCC
Q 009954 252 RVRRPTDY 259 (521)
Q Consensus 252 ~v~~~~~~ 259 (521)
.|.++...
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 99986543
No 327
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.41 E-value=2.3e-13 Score=113.00 Aligned_cols=76 Identities=25% Similarity=0.286 Sum_probs=66.1
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHH-HccCc
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDGI 244 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~g~ 244 (521)
...++|||+|||..+|+++|+++|.+||. |..+.+ +.++|||||+|.+.++|.+|+ .|||.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 87 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGE------------IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 87 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 34679999999999999999999999997 444444 345899999999999999999 69999
Q ss_pred eecCceEEEeCCCCC
Q 009954 245 IFEGVAVRVRRPTDY 259 (521)
Q Consensus 245 ~~~g~~i~v~~~~~~ 259 (521)
.|.|+.|.|.++...
T Consensus 88 ~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 88 DLMGQPISVDWCFVR 102 (126)
T ss_dssp BSSSSBCEEEESEES
T ss_pred eeCCeEEEEEEecCC
Confidence 999999999987543
No 328
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.4e-13 Score=108.31 Aligned_cols=75 Identities=15% Similarity=0.312 Sum_probs=64.4
Q ss_pred hccCCeEEEeCCCc-cCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 171 TRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 171 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
....++|||+|||. .+|+++|+++|.+||. |..+.+ .+|||||+|.+.++|..|+ .|||..+.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCC------------CCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 34577999999998 9999999999999997 444444 3899999999999999999 699999999
Q ss_pred ceEEEeCCCCC
Q 009954 249 VAVRVRRPTDY 259 (521)
Q Consensus 249 ~~i~v~~~~~~ 259 (521)
+.|.|.++...
T Consensus 73 ~~l~V~~a~~~ 83 (96)
T 2kvi_A 73 KKLILEVSSSN 83 (96)
T ss_dssp TTBCEEEEECC
T ss_pred cEEEEEEcCcC
Confidence 99999986543
No 329
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.40 E-value=4.7e-14 Score=117.68 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=65.9
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHH---hhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 248 (521)
...++|||+|||+++|+++|+++|.+||. |..+ ..+.+.. ++++|||||+|.+.++|.+|+++|+..|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v------~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~g 114 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGV------HFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGH 114 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTE------EEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEE------EEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECC
Confidence 45679999999999999999999999987 3321 1122222 667899999999999999999999999999
Q ss_pred ceEEEeCCC
Q 009954 249 VAVRVRRPT 257 (521)
Q Consensus 249 ~~i~v~~~~ 257 (521)
+.|.|.++.
T Consensus 115 r~i~V~~a~ 123 (136)
T 2hgl_A 115 RYIEVFKSH 123 (136)
T ss_dssp SEEEEEECC
T ss_pred EEEEEEECC
Confidence 999998754
No 330
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.5e-14 Score=110.96 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=65.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
....++|||+|||..+|+++|+++|..|+.+ ..+.+...+.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~---------~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRA---------RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEE---------EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEE---------EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3456899999999999999999999976431 11222234556799999999999999999 5999999999
Q ss_pred eEEEeCCCCCC
Q 009954 250 AVRVRRPTDYN 260 (521)
Q Consensus 250 ~i~v~~~~~~~ 260 (521)
.|.|.++....
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 2fc8_A 83 KVTLDWAKPKG 93 (102)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999976543
No 331
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.8e-14 Score=107.43 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=63.6
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i 251 (521)
..++|||+|||+.+|+++|+++|.+||.|..+.+ +.+...+.++|||||+|.+.++|.+|+ .|||..+.|+.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKA------ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEE------ECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------EecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 4679999999999999999999999998432100 111123456899999999999999999 699999999999
Q ss_pred EEeCCC
Q 009954 252 RVRRPT 257 (521)
Q Consensus 252 ~v~~~~ 257 (521)
++.++.
T Consensus 78 ~~~~~~ 83 (85)
T 1x4e_A 78 KQSGPS 83 (85)
T ss_dssp CSSCCC
T ss_pred eecCCC
Confidence 998753
No 332
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=103.73 Aligned_cols=64 Identities=16% Similarity=0.327 Sum_probs=58.6
Q ss_pred HHHHHhhccccceeE--------EEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcC
Q 009954 444 EDMREECGKYGTLVN--------VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 510 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~--------v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~ 510 (521)
++|+++|+.||.|.. |.|+.+..++.. +|+|||+|.+.++|++||+.|||..|+|+.|+|.|+.
T Consensus 28 ~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~---~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 28 ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKL---KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSE---EEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHhCCEeeccccccccEEEEecCCCCCe---eeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 599999999999999 999998766553 6899999999999999999999999999999999874
No 333
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=108.36 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~v 253 (521)
..+|||+|||+.+|+++|+++|..| .|.... ++.+ ..++++|||||+|.+.++|.+||++|+..|.|+.|.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~------i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVH------LLKD-HVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 87 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEE------ECCC-TTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEE------EEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 4689999999999999999999998 432110 0111 1256789999999999999999999999999999999
Q ss_pred eCCC
Q 009954 254 RRPT 257 (521)
Q Consensus 254 ~~~~ 257 (521)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 8754
No 334
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=107.35 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=61.7
Q ss_pred HHHHHhhcccccee-EEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcE----EEEEEcCCCCc
Q 009954 444 EDMREECGKYGTLV-NVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNT----VNAFYYPEDKY 514 (521)
Q Consensus 444 ~dl~~~f~~fG~I~-~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~----l~v~~~~~~~~ 514 (521)
++|+++|++||.|. .|.|+++..++.. +|+|||+|.+.++|++||+.|||..|+|+. |+|.|+....-
T Consensus 24 ~~l~~~F~~~G~i~~~v~i~~~~~~g~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 24 NFISRAFATMGETVMSVKIIRNRLTGIP---AGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSGP 96 (99)
T ss_dssp HHHHHHHHHTTCCCCEEEEEECSSSCCE---EEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred HHHHHHHHHhCCcceEEEEeecCCCCCc---CCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence 59999999999999 9999998766554 689999999999999999999999999999 99999887654
No 335
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.39 E-value=5.6e-13 Score=107.17 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=58.2
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 510 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~ 510 (521)
++|+++|+.||.|..|.|+.+. ++.. +|+|||+|.+.++|++||+.|||..|+|+.|+|.|++
T Consensus 44 ~~l~~~F~~~G~i~~v~i~~~~-~g~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 44 ADIQELFAEFGTLKKAAVHYDR-SGRS---LGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHTTSCEEEEEEEECT-TSCE---EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhcCCeEEEEEEECC-CCCc---ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5999999999999999999887 5543 6899999999999999999999999999999999975
No 336
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.39 E-value=4.1e-13 Score=115.99 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=67.5
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCCeEEEEecCHHHHHHHH-HccC
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDG 243 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~g 243 (521)
....++|||+|||..+|+++|+++|.+||.| ..+.+ +.++|||||+|.+.++|.+|+ .||+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 103 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDI------------KKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCE------------EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3467899999999999999999999999984 44443 445789999999999999999 5999
Q ss_pred ceecCceEEEeCCCCCC
Q 009954 244 IIFEGVAVRVRRPTDYN 260 (521)
Q Consensus 244 ~~~~g~~i~v~~~~~~~ 260 (521)
..|.|+.|+|.++....
T Consensus 104 ~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 104 TRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp SEETTEECEEEEESCCC
T ss_pred CEECCeEEEEEECCCCC
Confidence 99999999999976544
No 337
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.39 E-value=2.9e-14 Score=110.82 Aligned_cols=78 Identities=29% Similarity=0.417 Sum_probs=62.2
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEE
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v 253 (521)
++|||+|||..+++++|+++|++||.|..+.+ +.+..++.++|||||+|.+.+ |.+|+ .|||..+.|+.|.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKL------IYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEE------CCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEE------EEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 58999999999999999999999998532110 111123566899999999999 99999 69999999999999
Q ss_pred eCCCCC
Q 009954 254 RRPTDY 259 (521)
Q Consensus 254 ~~~~~~ 259 (521)
.++...
T Consensus 75 ~~a~~~ 80 (90)
T 2ki2_A 75 TEANPK 80 (90)
T ss_dssp EEC---
T ss_pred EEcCCC
Confidence 987654
No 338
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.39 E-value=5.7e-13 Score=107.06 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=60.1
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||+.|||..|+|+.|+|.|+.+.
T Consensus 41 ~~l~~~F~~~G~i~~v~i~~~~~~g~~---~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 41 DMLRGIFEPFGRIESIQLMMDSETGRS---KGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHHHHHTTTSCEEEEEEEEETTTTEE---EEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred HHHHHHHHhcCCeEEEEEEEcCCCCcc---ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 599999999999999999988766543 689999999999999999999999999999999998764
No 339
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4.6e-14 Score=106.14 Aligned_cols=75 Identities=11% Similarity=0.238 Sum_probs=61.3
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCceEEE
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~i~v 253 (521)
++|||+|||..+|+++|+++|++||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .++ ..+.|+.|.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECL------VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEE------EECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 4799999999999999999999999854311 1122234567899999999999999999 467 9999999999
Q ss_pred eCC
Q 009954 254 RRP 256 (521)
Q Consensus 254 ~~~ 256 (521)
+++
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 874
No 340
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.38 E-value=5.5e-14 Score=112.99 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=66.3
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHH---hhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecC
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~---~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 248 (521)
...++|||+|||+.+|+++|+++|..||. |..+. .+.+.. +.++|||||+|.+.++|.+||.+++..|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~------i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~g 81 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIH------FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQ 81 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEE------CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEE------EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCC
Confidence 45678999999999999999999999887 43221 122222 678899999999999999999999999999
Q ss_pred ceEEEeCCCC
Q 009954 249 VAVRVRRPTD 258 (521)
Q Consensus 249 ~~i~v~~~~~ 258 (521)
+.|.|.++..
T Consensus 82 r~i~V~~a~~ 91 (107)
T 2lmi_A 82 RYVEVYEINN 91 (107)
T ss_dssp SCCCCEECCH
T ss_pred eEEEEEECCH
Confidence 9999987653
No 341
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=113.91 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=70.1
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|||+.+|+++|+++|..||.|..+.+ .....+....++.++|||||+|.+.++|..|+ .|||..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~-~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQ-RIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHH-HHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccc-cceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34678999999999999999999999997643100 00000333467889999999999999999999 59999999999
Q ss_pred EEEeCCCCCC
Q 009954 251 VRVRRPTDYN 260 (521)
Q Consensus 251 i~v~~~~~~~ 260 (521)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999876543
No 342
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.4e-12 Score=104.70 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=60.3
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||..|||..|+|+.|+|.|+...
T Consensus 38 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 38 EDIHDKFAEYGEIKNIHLNLDRRTGYL---KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTSSE---EEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred HHHHHHHhccCCeEEEEEEecCCCCce---eeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 599999999999999999998766553 689999999999999999999999999999999998654
No 343
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.38 E-value=2.2e-12 Score=104.19 Aligned_cols=66 Identities=23% Similarity=0.367 Sum_probs=60.2
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|..||..|||..|+|+.|+|.|+...
T Consensus 41 ~~l~~~F~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 41 DEIQEKFCDYGEIKNIHLNLDRRTGFS---KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp HHHHHHHGGGSCEEEEECCBCTTTSSB---CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCc---ceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence 599999999999999999988766553 688999999999999999999999999999999998654
No 344
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1e-13 Score=113.41 Aligned_cols=84 Identities=24% Similarity=0.188 Sum_probs=65.4
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 250 (521)
.....+|||+|||+++|+++|+++|++||.|.+.. ..+..+.+ ..++++|||||+|.+.++|.+||+.|+..|.|+.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v--~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~ 96 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGK--EGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRY 96 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGG--GGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCc--ceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeE
Confidence 35578999999999999999999999998642100 00011122 3566789999999999999999977999999999
Q ss_pred EEEeCCC
Q 009954 251 VRVRRPT 257 (521)
Q Consensus 251 i~v~~~~ 257 (521)
|.|..+.
T Consensus 97 i~V~~a~ 103 (123)
T 2dha_A 97 IELFRST 103 (123)
T ss_dssp ECCEEEC
T ss_pred EEEEECC
Confidence 9997653
No 345
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=4e-14 Score=115.75 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=70.3
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCC--CCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAG--PGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~--~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
....++|||+|||..+|+++|+++|.+||.|..+.... .+..+.+..++.++|||||+|.+.++|.+|+ .||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 34567999999999999999999999999875410000 0112334455678999999999999999999 59999999
Q ss_pred CceEEEeCCCCC
Q 009954 248 GVAVRVRRPTDY 259 (521)
Q Consensus 248 g~~i~v~~~~~~ 259 (521)
|+.|.|.++...
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999987654
No 346
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.5e-12 Score=103.97 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=59.5
Q ss_pred HHHHHhhccccceeEEEecCCCCC-CCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQN-GGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~-~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~ 515 (521)
++|+++|+.|| |..|.|+.+..+ +.. +|+|||+|.+.++|++|| .|||..|+|+.|+|.|+....-.
T Consensus 30 ~~l~~~F~~~G-i~~v~i~~~~~~~g~~---~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 30 ESIKEFFRGLN-ISAVRLPREPSNPERL---KGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp HHHHHHTTTSC-EEEEECCBCSSCTTSB---CSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred HHHHHHHHHCC-ceEEEEecCCCCCCCc---CeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence 59999999999 999999998765 443 578899999999999999 99999999999999998876543
No 347
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=2.1e-12 Score=103.88 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCCCCC----------HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeC
Q 009954 293 GPDRVFVGGLPYYFT----------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (521)
Q Consensus 293 ~~~~l~v~nLp~~~t----------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 362 (521)
+.++|.|.||-..-. ++||+++|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||.+|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346899999954322 26899999999999999987652 4899999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 009954 363 DKTLTVRRAT 372 (521)
Q Consensus 363 g~~l~v~~~~ 372 (521)
|+.|.|.|+.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999985
No 348
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.37 E-value=4.7e-13 Score=108.96 Aligned_cols=72 Identities=25% Similarity=0.344 Sum_probs=62.3
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce-
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA- 250 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~- 250 (521)
..++|||+|||+++|+++|+++|.+||. |..+.+... |||||+|.+.++|++|| .||+..|.|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSC------------EEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 4578999999999999999999999997 667776655 99999999999999999 59999999988
Q ss_pred ----EEEeCCC
Q 009954 251 ----VRVRRPT 257 (521)
Q Consensus 251 ----i~v~~~~ 257 (521)
|+|....
T Consensus 82 ~~~~i~v~~~~ 92 (115)
T 3beg_B 82 ETAYIRVKVDG 92 (115)
T ss_dssp CCCBCEEEECC
T ss_pred eeEEEEeccCC
Confidence 6666543
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.36 E-value=9.7e-14 Score=113.81 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=61.9
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCCeEEEEecCHHHHHHHHHccCcee
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGIIF 246 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~A~~l~g~~~ 246 (521)
...++|||+|||+.+|+++|+++|++| .|+ ..++.+ ++++|||||+|.+.++|.+|+++++..|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~----------~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIV----------PNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEE----------EEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-Cce----------eeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEE
Confidence 446789999999999999999999999 321 003333 5678999999999999999998888999
Q ss_pred cCceEEEeCC
Q 009954 247 EGVAVRVRRP 256 (521)
Q Consensus 247 ~g~~i~v~~~ 256 (521)
.|+.|.|.++
T Consensus 109 ~gR~I~V~~a 118 (126)
T 2hgm_A 109 GHRYIEVFKS 118 (126)
T ss_dssp TTBCCCCEEE
T ss_pred CCEEEEEEEC
Confidence 9999999764
No 350
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=1.6e-12 Score=103.62 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=60.0
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYF 515 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~ 515 (521)
++|+++|+.|| |..|.|+.+..++.. +|+|||+|.+.++|++|| .|||..|+|+.|+|.|+....-.
T Consensus 30 ~~l~~~F~~~g-i~~v~i~~~~~~g~~---~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 30 GDIDAIFKDLS-IRSVRLVRDKDTDKF---KGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp HHHHHHTTTSC-EEEEEEEECSSSCSE---EEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred HHHHHHHHhCC-ceEEEEeecCCCCcc---ceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 59999999997 999999998766554 689999999999999999 89999999999999998876543
No 351
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.35 E-value=1.9e-12 Score=110.09 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=63.8
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe--cCCCCeEEEEecCHHHHHHHH-HccCceecC--
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAM-ALDGIIFEG-- 248 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~--~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-- 248 (521)
..+|||+||++.+|+++|+++|++||. |.++.+ ...+|||||+|.+.++|..|+ .|||..|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~------------V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g 113 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGT------------VLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 113 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSC------------EEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCC
Confidence 457999999999999999999999998 444444 345789999999999999999 699999966
Q ss_pred ceEEEeCCCCC
Q 009954 249 VAVRVRRPTDY 259 (521)
Q Consensus 249 ~~i~v~~~~~~ 259 (521)
+.|+|.+++..
T Consensus 114 ~~L~V~~Ak~~ 124 (164)
T 1sjr_A 114 CTLRIDFSKLT 124 (164)
T ss_dssp SCEEEEECSSS
T ss_pred cEEEEEEecCC
Confidence 99999997754
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=1.5e-12 Score=106.14 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=61.8
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCe-EEEEecCHHHHHHHH-HccCceecC--ce
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF-AFVEMRTVEEASNAM-ALDGIIFEG--VA 250 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g--~~ 250 (521)
..|||+||++.+|+++|+++|++||. |.++.+....|| |||+|.+.++|..|+ .|||..|.| +.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~------------V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGK------------VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSC------------EEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCC------------EEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 35789999999999999999999998 444443333596 999999999999999 799999988 68
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|+|.+++..
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999987654
No 353
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.35 E-value=7e-14 Score=117.00 Aligned_cols=81 Identities=25% Similarity=0.194 Sum_probs=65.0
Q ss_pred hhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCc
Q 009954 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (521)
Q Consensus 170 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 249 (521)
.....++|||+|||+++|+++|+++|++|| ++.+.+ +.+. .++++|||||+|.+.++|++||++|+..|.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i------~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR 113 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI------EIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHR 113 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC------CCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE------EECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCE
Confidence 345568999999999999999999999998 432211 2222 26678999999999999999999999999999
Q ss_pred eEEEeCCCC
Q 009954 250 AVRVRRPTD 258 (521)
Q Consensus 250 ~i~v~~~~~ 258 (521)
.|.|.++..
T Consensus 114 ~i~V~~a~~ 122 (139)
T 2hgn_A 114 YIELFLNST 122 (139)
T ss_dssp CCCCEECCC
T ss_pred EEEEEECCC
Confidence 999987543
No 354
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.35 E-value=2.7e-12 Score=108.69 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=57.6
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
++|+++|+.||.|..|.|+.+..++.. +|+|||+|.+.++|++||+.|||..|+|+.|+|.|+
T Consensus 78 ~~l~~~f~~~G~i~~v~i~~~~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 78 KVLHAAFIPFGDITDIQIPLDYETEKH---RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHHHHHGGGSCEEEEECCCCTTTCCC---CSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred HHHHHHHHhcCCEEEEEEeecCCCCCc---CcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 599999999999999999998766654 688999999999999999999999999999999885
No 355
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.6e-12 Score=98.82 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=62.7
Q ss_pred CeEEEcCCC-------CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 295 DRVFVGGLP-------YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 295 ~~l~v~nLp-------~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
.+|.|.-.. ..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|.+|++.+++ +.|+.|.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 466665554 458999999999999999999987 35799999999999999999997554 6799999
Q ss_pred EEEccCCC
Q 009954 368 VRRATASG 375 (521)
Q Consensus 368 v~~~~~~~ 375 (521)
|.|+....
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99997643
No 356
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.33 E-value=3.2e-12 Score=105.69 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=60.9
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
++|+++|+.||.|..|.|+.+. ++.. +|+|||+|.+.++|++|+..|||..|+|+.|+|.|+.....
T Consensus 50 ~~l~~~F~~~G~v~~v~i~~~~-~g~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 50 ADIQELFAEFGTLKKAAVDYDR-SGRS---LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp HHHHHHHHTTSCCSEEEEECCS-SSSC---CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred HHHHHHHHhcCCeeEEEEEECC-CCCE---eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 5999999999999999999987 6543 68899999999999999999999999999999999877554
No 357
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.33 E-value=2.1e-13 Score=125.17 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=64.2
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHH--HhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCc
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 249 (521)
..++|||+|||+.+|+++|+++|.+|| .|..+. ++.+..++.++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~------i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK------FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEE------EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 567899999999999999999999999 643211 1111124556899999999999999999 5999999999
Q ss_pred eEEEeCCCC
Q 009954 250 AVRVRRPTD 258 (521)
Q Consensus 250 ~i~v~~~~~ 258 (521)
.|+|.++..
T Consensus 141 ~l~V~~a~~ 149 (229)
T 3q2s_C 141 NPVVTPVNK 149 (229)
T ss_dssp CCEEEECCH
T ss_pred EeEEEECCC
Confidence 999998653
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.32 E-value=1.4e-12 Score=106.89 Aligned_cols=74 Identities=23% Similarity=0.362 Sum_probs=65.7
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecCce
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 250 (521)
...++|||+|| .+|+++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~------------I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCC------------CSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCC------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 45689999996 6999999999999997 555566689999999999999999999 79999999999
Q ss_pred EEEeCCCCC
Q 009954 251 VRVRRPTDY 259 (521)
Q Consensus 251 i~v~~~~~~ 259 (521)
|.|.++...
T Consensus 103 l~V~~a~~~ 111 (121)
T 2bz2_A 103 LKVNIARKQ 111 (121)
T ss_dssp CEEEECCSS
T ss_pred EEEEEeCCC
Confidence 999987654
No 359
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.3e-12 Score=104.80 Aligned_cols=80 Identities=13% Similarity=0.266 Sum_probs=63.7
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCcee---
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF--- 246 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--- 246 (521)
....++|||+|||..+|+++|+++|..||.|..+.+ +.+ ..+.++|||||+|.+.++|.+|+ .|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i------~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRI------LRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE------EEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE------EEC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 445689999999999999999999999998432110 111 13455799999999999999999 6999999
Q ss_pred -----cCceEEEeCCC
Q 009954 247 -----EGVAVRVRRPT 257 (521)
Q Consensus 247 -----~g~~i~v~~~~ 257 (521)
.+++|.|.++.
T Consensus 95 ~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 95 PGVSAPTEPLLCKFSG 110 (114)
T ss_dssp TTSCCCSSCBEEEECC
T ss_pred ccccCCCCceeEEccC
Confidence 57778888764
No 360
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=97.46 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=57.1
Q ss_pred HHHHHhhccccceeEE-EecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 444 EDMREECGKYGTLVNV-VIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v-~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
++|+++|+.||.|..| .|+.+..+ |.|||+|.+.++|..||..|||..|+|++|+|.|+.+.+.
T Consensus 30 ~~l~~~F~~~G~v~~~~~i~~~~~~-------~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 94 (96)
T 2e44_A 30 EVLDSLLVQYGVVESCEQVNTDSET-------AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEMA 94 (96)
T ss_dssp HHHHHHHHHHSCEEEEEEECCSSSS-------EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCCS
T ss_pred HHHHHHHHhcCCeEEEEEeecCCCC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcccc
Confidence 4999999999999999 58876532 4589999999999999999999999999999999988754
No 361
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.31 E-value=3.1e-12 Score=98.70 Aligned_cols=74 Identities=27% Similarity=0.425 Sum_probs=57.8
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCCeEEEEecCHHHHHHHHHccCce--ec
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAMALDGII--FE 247 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~a~~A~~l~g~~--~~ 247 (521)
.....+|||+|||+++|+++|+++|++||. |.++.+. .++|||||+|.+.++|.+ +++.. +.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~------------i~~v~i~~~srGfaFV~F~~~~~A~~---~~~~~~~~~ 72 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGE------------VVDVFIPKPFRAFAFVTFADDKVAQS---LCGEDLIIK 72 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEECCSSCCSEEEEEESCHHHHHH---HTTCEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEeeCCCCEEEEEECCHHHHHH---HcCCCcccC
Confidence 344678999999999999999999999998 5566554 369999999999999984 34444 56
Q ss_pred CceEEEeCCCCC
Q 009954 248 GVAVRVRRPTDY 259 (521)
Q Consensus 248 g~~i~v~~~~~~ 259 (521)
|+.|.|.++...
T Consensus 73 g~~v~v~~a~~k 84 (89)
T 3d2w_A 73 GISVHISNAEPK 84 (89)
T ss_dssp TEEEEEEECC--
T ss_pred CEEEEEEEcCCC
Confidence 899999886543
No 362
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=5e-12 Score=100.87 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=60.4
Q ss_pred HHHHHhhccccceeE-EEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCccc
Q 009954 444 EDMREECGKYGTLVN-VVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFN 516 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~-v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~~ 516 (521)
++|+++|+.||.|.. |.|+.+ .++.. +|+|||+|.+.++|++||+. ||..|+|+.|.|.+++..++..
T Consensus 30 ~~l~~~F~~~G~v~~~v~i~~~-~~g~~---~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 30 EEIVQFFSGLEIVPNGMTLPVD-FQGRS---TGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEVRT 98 (104)
T ss_dssp HHHHHHTTTCCEEEEEEECCBC-SSSCB---CSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSCC
T ss_pred HHHHHHHHhcCCcceeEEEEEC-CCCCc---ceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHHHH
Confidence 699999999999998 888887 46554 68899999999999999997 9999999999999998877653
No 363
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.4e-12 Score=101.25 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=61.0
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCcccccC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDY 519 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~~~~~~ 519 (521)
++|+++|++|| |+.|.|+.+. ++.. +|+|||+|.+.++|++||+ +|+..|+|+.|+|.++....-..+.|
T Consensus 30 ~~l~~~F~~~G-~~~v~i~~d~-~g~~---~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~~~~~~ 99 (102)
T 1wez_A 30 NDIYNFFSPLN-PMRVHIEIGP-DGRV---TGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGTSGSGP 99 (102)
T ss_dssp HHHHHSSCSCC-CSEEEEEESS-SSCE---EEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCCCCCCS
T ss_pred HHHHHHHHHcC-ceEEEEEECC-CCCE---eeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCCCCCCC
Confidence 69999999999 5599999987 6543 6899999999999999995 79999999999999988877665554
No 364
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.8e-12 Score=98.99 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=61.2
Q ss_pred cCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCCeEEEEecCHHHHHHHHHccCceecCceE
Q 009954 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 173 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
..++|||+|||..+|+++|+++|.+||. |..+.+. .++|||||+|.+.++|++|+.. ...+.|+.|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l 70 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGD------------VMDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGISV 70 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSC------------CCEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCC------------eeEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEEE
Confidence 4689999999999999999999999997 4455543 3689999999999999876532 455689999
Q ss_pred EEeCCCCCC
Q 009954 252 RVRRPTDYN 260 (521)
Q Consensus 252 ~v~~~~~~~ 260 (521)
.|.++....
T Consensus 71 ~v~~a~~~~ 79 (88)
T 1wf0_A 71 HISNAEPKH 79 (88)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999876543
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=3.6e-12 Score=116.06 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=68.9
Q ss_pred hccCCeEEEeCCCccC---------cHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-H
Q 009954 171 TRHARRVYVGGLPPLA---------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-A 240 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~---------t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~ 240 (521)
....++|||+||+..+ ++++|+++|++||. |.++.+..++|||||+|.+.++|+.|+ .
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~------------I~~v~v~~~kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGD------------IDRIRYVESKNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCC------------EEEEEEECCCCEEEEEeCCHHHHHHHHHH
Confidence 3457899999999998 89999999999998 777787789999999999999999999 7
Q ss_pred ccCcee------------cCceEEEeCCCCC
Q 009954 241 LDGIIF------------EGVAVRVRRPTDY 259 (521)
Q Consensus 241 l~g~~~------------~g~~i~v~~~~~~ 259 (521)
|+|..| .|+.|.|.|+...
T Consensus 199 m~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 199 MSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred hCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 999999 8999999998754
No 366
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.26 E-value=2e-11 Score=99.80 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=56.1
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccE-EEEEecCHHHHHHHHHHHhCCeeCC--cEEEEEEcCCCCc
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGK-VFLEYYDAVGCATAKNALSGRKFGG--NTVNAFYYPEDKY 514 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~-afV~F~~~~~A~~Ai~~lng~~~~g--r~l~v~~~~~~~~ 514 (521)
++|.++|++||.|.+|.|.... .|+ |||+|.+.++|+.|++.|||..|.| ++|+|.|+.....
T Consensus 43 ~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 43 DVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp HHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred HHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 5999999999999999997642 356 9999999999999999999999988 9999999877643
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=1.1e-11 Score=119.29 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=65.7
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCee---CCe-
Q 009954 291 AEGPDRVFVGG--LPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDK- 364 (521)
Q Consensus 291 ~~~~~~l~v~n--Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~- 364 (521)
..+..+|||+| |+..+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34557899999 578999999999999999999987753 479999999999999999999999877 244
Q ss_pred -EEEEEEccC
Q 009954 365 -TLTVRRATA 373 (521)
Q Consensus 365 -~l~v~~~~~ 373 (521)
.|.|.|+..
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 678888753
No 368
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.26 E-value=1.1e-12 Score=104.50 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=63.5
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceE
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i 251 (521)
...++|||+|||..+|+++|+++|..||.|..+.+ +.+ ..+.++|||||+|.+.++|.+|+. ++..+.|+.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~-~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l 78 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKI------ITD-RTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKL 78 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE------EEC-TTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE------EEC-CCCCccceEEEEECCHHHHHHHHh-CCCeECCEEE
Confidence 44679999999999999999999999998432110 111 134467999999999999999999 9999999999
Q ss_pred EEeCCC
Q 009954 252 RVRRPT 257 (521)
Q Consensus 252 ~v~~~~ 257 (521)
.|.++.
T Consensus 79 ~v~~a~ 84 (102)
T 2xs2_A 79 KLGPAI 84 (102)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 998754
No 369
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.2e-12 Score=103.20 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=55.8
Q ss_pred ccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---cCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 172 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
...++|||+|||+.+|+++|+++|.+||.|. ..+ +.+..+ +.++|||||+|.+.++|.+|+ .|+ .+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~------~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~ 76 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDW------PHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EED 76 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EEC------TTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEE------eecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcC
Confidence 3468999999999999999999999999853 110 111112 467899999999999999999 562 255
Q ss_pred CceEEEeC
Q 009954 248 GVAVRVRR 255 (521)
Q Consensus 248 g~~i~v~~ 255 (521)
|+.+.+..
T Consensus 77 G~~~~~~~ 84 (114)
T 2dnl_A 77 GKLYLCVS 84 (114)
T ss_dssp TEEEEEEC
T ss_pred CcEEEecc
Confidence 55555543
No 370
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.6e-11 Score=98.25 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=57.0
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecC----HHH----HHHHHH--HHhCCeeCCcEEEEEEcCC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYD----AVG----CATAKN--ALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~----~~~----A~~Ai~--~lng~~~~gr~l~v~~~~~ 511 (521)
.+|+++|+.||+|..|.++.|+.+|.+ +|++||+|.+ +++ |.+|+. .|||..|+|++|+|.+-..
T Consensus 21 ~~Lk~~Fs~fGeV~~~~li~Dp~Tg~s---lGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 21 ISIKNYFKKYGEISHFEAFNDPNSALP---LHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp HHHHHHHHTTSCCSEEEEEECTTTCCE---EEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCce---eeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 599999999999999999999999886 6888999996 544 899999 7999999999999997544
No 371
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.18 E-value=1.8e-11 Score=109.17 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=66.1
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCCeEEEEecCHHHHHHHHHccCce
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGII 245 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~-----~~~~g~afV~f~~~~~a~~A~~l~g~~ 245 (521)
....++|||+|||+.+|+++|+++|++||.| ..+.+ +.++|||||+|.+.++|.+|+.+.+..
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v------------~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~ 173 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQV------------LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQK 173 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTTSCCE------------EEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCE
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhcCCCE------------EEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCe
Confidence 3457899999999999999999999999984 33333 346799999999999999999766779
Q ss_pred ecCceEEEeCCCCCC
Q 009954 246 FEGVAVRVRRPTDYN 260 (521)
Q Consensus 246 ~~g~~i~v~~~~~~~ 260 (521)
+.|+.|.|.+...|.
T Consensus 174 ~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 174 YKETDLLILFKDDYF 188 (193)
T ss_dssp ETTEECEEEETTTC-
T ss_pred ECCEEEEEEEhHHHH
Confidence 999999999877664
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6.4e-11 Score=92.76 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=52.5
Q ss_pred HHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 443 LEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 443 ~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
+++|+++|++||.|..|.|+.. .+|+|||+|.+.++|+.||+.+++ +.|+.|+|.|+....
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~--------~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSK--------KPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESS--------SSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHHHHHHhcCCEEEEEEccC--------CCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 3699999999999999999842 258889999999999999998555 689999999987653
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=9e-10 Score=82.44 Aligned_cols=62 Identities=6% Similarity=0.286 Sum_probs=55.5
Q ss_pred HHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCCc
Q 009954 441 EILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKY 514 (521)
Q Consensus 441 ~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~~ 514 (521)
.+..+|.+.|.+||+|..|+|..+. +||+|.+.++|.+||+ |||..++|+.|+|.+.+++=-
T Consensus 27 ~l~~~L~~~F~~~G~Vi~vr~~~d~-----------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 27 ALIDELLQQFASFGEVILIRFVEDK-----------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSGP 88 (91)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSS-----------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSSC
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCC-----------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCcc
Confidence 3456899999999999999998853 4999999999999999 999999999999999987643
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=4e-10 Score=108.36 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=63.1
Q ss_pred hccCCeEEEeC--CCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceec
Q 009954 171 TRHARRVYVGG--LPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (521)
Q Consensus 171 ~~~~~~l~v~n--lp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 247 (521)
..++++|||+| |+..+|+++|+++|++||. |..+.+..++|||||+|.+.++|++|+ .|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~------------V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC------------EEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 34567999999 5788999999999999998 677777778999999999999999999 79999884
Q ss_pred ---Cc--eEEEeCC
Q 009954 248 ---GV--AVRVRRP 256 (521)
Q Consensus 248 ---g~--~i~v~~~ 256 (521)
|+ .+.|.+.
T Consensus 83 ~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 83 DDLGQKITLYLNFV 96 (345)
T ss_dssp CTTSCEEECEEEEC
T ss_pred cccCCceEEEEEEe
Confidence 44 5667664
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=7.7e-10 Score=82.80 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=60.0
Q ss_pred CeEEEcCCCC----CCCH----HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEE
Q 009954 295 DRVFVGGLPY----YFTE----TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (521)
Q Consensus 295 ~~l~v~nLp~----~~te----~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (521)
-||+|.-.+. ..-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+||+ |||..++|+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 3777766652 2222 6799999999999999999873 8999999999999999 99999999999
Q ss_pred EEEEccC
Q 009954 367 TVRRATA 373 (521)
Q Consensus 367 ~v~~~~~ 373 (521)
+|.++++
T Consensus 79 kV~lkt~ 85 (91)
T 2dnr_A 79 TIALKSP 85 (91)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999876
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=9.2e-10 Score=88.35 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcC-hHHHHHHHHHHc--CCeeCCeEEE
Q 009954 292 EGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD-PAVTDIACAALN--GLKMGDKTLT 367 (521)
Q Consensus 292 ~~~~~l~v~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Al~~l~--g~~~~g~~l~ 367 (521)
.....|+|+||+.. +++++|+++|++||.|..|.+..+.. .|||+|.+ .++|..|+..|+ |..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34468999999999 99999999999999999999998854 59999999 899999999995 7889999988
Q ss_pred EEEcc
Q 009954 368 VRRAT 372 (521)
Q Consensus 368 v~~~~ 372 (521)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88763
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.92 E-value=3.7e-09 Score=96.76 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeecC----CCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 306 FTETQIKELLESFGTLHGFDLVKDR----DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 306 ~te~~l~~~F~~~G~i~~v~i~~~~----~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
-.+++|.+.|++||.|.+|.|+.+. .++.++|++||+|.+.++|.+|+..|||.+|+|+.|.|.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568999999999999999998554 355899999999999999999999999999999999999985
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.4e-09 Score=80.42 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=52.1
Q ss_pred HHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcC
Q 009954 441 EILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYP 510 (521)
Q Consensus 441 ~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~ 510 (521)
.+..+|.+.|..||+|..|+|..+. +||+|.+.++|.+||+ |||..++|+.|+|.+-.
T Consensus 36 ~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 36 DLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 3456899999999999999999863 5999999999999999 99999999999998754
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=6.9e-09 Score=77.97 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=59.6
Q ss_pred CeEEEcCCCCC------CCH---HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeE
Q 009954 295 DRVFVGGLPYY------FTE---TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (521)
Q Consensus 295 ~~l~v~nLp~~------~te---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (521)
-||+|.-++.. ..+ .+|.+.|++||.|..++++.+. +||+|.+.++|.+||+ |||..++|+.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 48888887643 221 5699999999999999999883 9999999999999998 9999999999
Q ss_pred EEEEEcc
Q 009954 366 LTVRRAT 372 (521)
Q Consensus 366 l~v~~~~ 372 (521)
|+|.+-.
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999754
No 380
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=8.5e-08 Score=76.90 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=62.4
Q ss_pred cCCeEEEeCCCcc-CcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecC-HHHHHHHH-Hc--cCceec
Q 009954 173 HARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT-VEEASNAM-AL--DGIIFE 247 (521)
Q Consensus 173 ~~~~l~v~nlp~~-~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~-~~~a~~A~-~l--~g~~~~ 247 (521)
..+.|+|+||+.. ++.++|+++|++||. |..+.+......|||.|.+ ..+|..|+ .+ ++..|.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~------------V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGE------------IKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCC------------EEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3568999999999 999999999999987 8888888888899999999 89999999 67 478888
Q ss_pred CceEEEeC
Q 009954 248 GVAVRVRR 255 (521)
Q Consensus 248 g~~i~v~~ 255 (521)
|..+++..
T Consensus 85 g~~~~~ev 92 (121)
T 1owx_A 85 NKEVTWEV 92 (121)
T ss_dssp SSSEEEEE
T ss_pred CcEEEEEE
Confidence 98888763
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.3e-07 Score=72.24 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=54.6
Q ss_pred HHHHHhhccc-----cceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCC
Q 009954 444 EDMREECGKY-----GTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPE 511 (521)
Q Consensus 444 ~dl~~~f~~f-----G~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~ 511 (521)
..|+.++++| |.|++|.+..+. |-|+|+|.+...|.+|...|+|..|.|++|+|.-+.+
T Consensus 36 arIr~lve~~~~i~~g~i~KI~L~pDH---------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~e 99 (117)
T 2l9w_A 36 SLICQFLQEEIHINEKDIRKILLVSDF---------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIND 99 (117)
T ss_dssp HHHHHHHHHHTCCCTTTCSEEEEETTT---------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHHH
T ss_pred HHHHHHHhhhhccCccceeEEEEecCC---------CceEEEEccchhhHHHHhhcCCeeecCeEEEecCHHH
Confidence 3899999999 999999999986 6799999999999999999999999999999987654
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=5e-07 Score=69.07 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLESF-----GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
..++|-|-|||..++...|+.+.+++ |.|..|.+..|. +-|+|+|.+...|-+|.-+|+|..|.|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 999999999884 3599999999999999999999999999999
Q ss_pred EEEc
Q 009954 368 VRRA 371 (521)
Q Consensus 368 v~~~ 371 (521)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9854
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=3.2e-05 Score=58.81 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=59.4
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecCceEEE
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRV 253 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~i~v 253 (521)
.++|.|.|||+.+.++.|.-+|+.--. .-+..|..+.... +-|+|+|.+.+.|++.|+.....|.+..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rr-------sGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRR-------SGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTT-------TCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCc-------CCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 468999999999999999999996200 1234577777665 8899999999999999977788888999999
Q ss_pred eC
Q 009954 254 RR 255 (521)
Q Consensus 254 ~~ 255 (521)
..
T Consensus 79 ~P 80 (104)
T 2dhx_A 79 RP 80 (104)
T ss_dssp EE
T ss_pred Ec
Confidence 74
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=3.5e-05 Score=58.95 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCC-C----HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEE
Q 009954 292 EGPDRVFVGGLPYYF-T----ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (521)
Q Consensus 292 ~~~~~l~v~nLp~~~-t----e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (521)
..+++|+|.||+..+ . .+.+.++|..|+++......+.- .-..|.|.++++|.+|...||+..|.|..|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 456799999998865 2 25789999999998887776642 137999999999999999999999999999
Q ss_pred EEEEccC
Q 009954 367 TVRRATA 373 (521)
Q Consensus 367 ~v~~~~~ 373 (521)
+|-|+++
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999964
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.63 E-value=0.0003 Score=52.77 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=45.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 357 (521)
..++| ++|+.+...||.++|+.||.| .|..+.|. .|||.|.+++.|..|++.+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 44556 999999999999999999965 56677763 59999999999999999763
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=0.0003 Score=53.78 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=55.5
Q ss_pred HHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCCC
Q 009954 442 ILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPEDK 513 (521)
Q Consensus 442 ~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~~ 513 (521)
+++.++++|..|+++......+. +.-+.|.|.++++|.+|-..|++..|+|+.|+|.|.....
T Consensus 23 lk~~~e~Lf~~~~~~~tF~~lkS---------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 23 TRAKFESLFRTYDKDTTFQYFKS---------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHHHHHTTCSSCEEEEETT---------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHHHHHHHHhhCcCcceeecCc---------ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 44688999999999999888775 3678999999999999999999999999999999976443
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.00079 Score=51.20 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHh-----cCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEE
Q 009954 293 GPDRVFVGGLPYYFTETQIKELLES-----FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (521)
Q Consensus 293 ~~~~l~v~nLp~~~te~~l~~~F~~-----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (521)
...+|.|.|||+.+.++.|.-+|+. -|.|..|.... +-|+|+|.+.+.|++.|+. ..+.|.|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3468999999999999999999996 25688888754 2599999999999999873 46889999999
Q ss_pred EEEccC
Q 009954 368 VRRATA 373 (521)
Q Consensus 368 v~~~~~ 373 (521)
|....+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 987654
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.34 E-value=0.0013 Score=49.52 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=56.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC--cceEEEEEEcChHHHHHHHHHHcCCee
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--SKGYGFCVYQDPAVTDIACAALNGLKM 361 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~Al~~l~g~~~ 361 (521)
++|.|++||+.+||+++.+.++.+..+........+.+.. .-.-|||.|.+.+++..-.+.++|..|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4799999999999999999999988887777666543322 235699999999999999999999877
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.00094 Score=52.64 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=59.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCC-eEEEEEEcc
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-KTLTVRRAT 372 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-~~l~v~~~~ 372 (521)
.+-|.|-+.|+.. ...|..+|++||.|....... + ..+-.|.|.+..+|++||. .||..|+| ..|-|.++.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----T--GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----S--SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----C--CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 4579999999985 667899999999999887621 1 3489999999999999999 59999984 778888875
Q ss_pred C
Q 009954 373 A 373 (521)
Q Consensus 373 ~ 373 (521)
.
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.0021 Score=50.61 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=60.3
Q ss_pred hccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHHHccCceecC-c
Q 009954 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG-V 249 (521)
Q Consensus 171 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g-~ 249 (521)
....+.|.|-|.|+.. ...|..+|++||. |++........+-.|.|.+..+|++||..||..+.| -
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~------------Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~ 87 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGN------------ILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESI 87 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSC------------EEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTTE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCc------------EEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecCCE
Confidence 3446789999999986 5678889999998 555555556789999999999999999999999985 6
Q ss_pred eEEEeCCC
Q 009954 250 AVRVRRPT 257 (521)
Q Consensus 250 ~i~v~~~~ 257 (521)
.|-|.+..
T Consensus 88 mIGV~p~~ 95 (119)
T 1wwh_A 88 MIGVKPCI 95 (119)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 77777643
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.92 E-value=0.0018 Score=48.77 Aligned_cols=53 Identities=19% Similarity=0.410 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc
Q 009954 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (521)
Q Consensus 296 ~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 357 (521)
.++| ++|+.+...||.++|+.||.| .|..+.|. .|||.|.+++.|..|++.+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3555 999999999999999999944 57777763 59999999999999999874
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.63 E-value=0.0018 Score=51.70 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=50.1
Q ss_pred HHHHHhhccccceeE-EEecCCCC--------CCCCC--CCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEcCCC
Q 009954 444 EDMREECGKYGTLVN-VVIPRPDQ--------NGGET--PGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYYPED 512 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~-v~i~~~~~--------~~~~~--~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~~~~ 512 (521)
..|-++|++||.|.. +.+.+... ..... .|.+...|+|++..+|.+||.. ||..|+|.-|=|..++..
T Consensus 21 ~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 21 NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEECCHH
T ss_pred HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEECCHH
Confidence 489999999999887 32322110 00000 1457899999999999999995 999999999989888654
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.22 E-value=0.0035 Score=50.08 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=55.4
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceE------EEEec--CCCCeEEEEecCHHHHHHHHHccCce
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV------NVYIN--HEKKFAFVEMRTVEEASNAMALDGII 245 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~------~~~~~--~~~g~afV~f~~~~~a~~A~~l~g~~ 245 (521)
...|.|-|.|+..+ ..+.+.|++||.|+............ ..... ....+..|+|.+..+|.+||..||..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 45688999977765 56778999999976432110000000 00000 13467899999999999999999999
Q ss_pred ecCceEEEeCC
Q 009954 246 FEGVAVRVRRP 256 (521)
Q Consensus 246 ~~g~~i~v~~~ 256 (521)
|.|..|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99998888754
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.84 E-value=0.0058 Score=46.19 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=49.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC--cceEEEEEEcChHHHHHHHHHHcCCee
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--SKGYGFCVYQDPAVTDIACAALNGLKM 361 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~--~~g~afV~f~~~~~A~~Al~~l~g~~~ 361 (521)
-+|.|+.||+.+||+++.+.++.+-.+........+.+.. .-.-|||.|.+.++...-.+.++|..|
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 4799999999999999888887655544333322222111 113489999999999999999999776
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.07 E-value=0.013 Score=58.31 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHH
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 355 (521)
+.|+|. .|..+++.+|.++|++||+|.++.+..+ .| -||.|||.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHhc
Confidence 679997 6999999999999999999999988875 33 5999999999999977653
No 396
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.06 E-value=0.017 Score=43.29 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=46.2
Q ss_pred CeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe--cC------CCCeEEEEecCHHHHHHHH-HccCce
Q 009954 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--NH------EKKFAFVEMRTVEEASNAM-ALDGII 245 (521)
Q Consensus 175 ~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~--~~------~~g~afV~f~~~~~a~~A~-~l~g~~ 245 (521)
.+|.|++||+.+||+++.+.+..+.. +..... ++ .-.-|||.|.+.+++.... .++|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~------------~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPE------------HDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCC------------EEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCccc------------ceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 47999999999999999988876532 211111 11 1257999999999999888 699988
Q ss_pred ecC
Q 009954 246 FEG 248 (521)
Q Consensus 246 ~~g 248 (521)
+.+
T Consensus 70 F~D 72 (91)
T 1uw4_A 70 FLD 72 (91)
T ss_dssp EEC
T ss_pred EEc
Confidence 754
No 397
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.18 E-value=0.37 Score=36.15 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=32.1
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
.||.++|++||.|. |.-+-| --|||.|.+++.|..|+..++
T Consensus 30 ~DI~~lFs~fggv~-I~WidD----------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 30 SDLYQLFSAFGNIQ-ISWIDD----------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHHHTTTCSCC-CEEEET----------TEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEE-EEEEcC----------CeEEEEecCHHHHHHHHHhcc
Confidence 49999999999544 222233 268999999999999999774
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.72 E-value=0.031 Score=55.51 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=44.1
Q ss_pred hhhccCCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCC-eEEEEecCHHHHHHHHHccC
Q 009954 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK-FAFVEMRTVEEASNAMALDG 243 (521)
Q Consensus 169 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g-~afV~f~~~~~a~~A~~l~g 243 (521)
......++|+|. .|..+++.+|.++|++||. |.++...+++| ||.|+|.+.+++..++...+
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~------------i~~~~~~~~~g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGP------------INNHFFYESFGLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSC------------CCCEEEECSSSEEEEEECC---CCHHHHSSCC
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCC------------cceEEEEccCCeEEEEEeCCHHHHHHHHhccC
Confidence 345667899998 6999999999999999998 55555556665 99999999999998874433
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.18 E-value=0.29 Score=36.84 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
.||.++|++||.|. |.-+-| --|||.|.+++.|..|+..++
T Consensus 20 ~Di~~lFs~fggv~-I~WidD----------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLFSAFGNIQ-ISWIDD----------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHTTTSEEEE-EEEEET----------TEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHhccCCEE-EEEEcC----------CeEEEEecCHHHHHHHHHhcc
Confidence 49999999999443 333333 268999999999999999875
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.10 E-value=0.099 Score=39.43 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=44.6
Q ss_pred CCeEEEeCCCccCcHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCCeEEEEecCHHHHHHHH-HccCceecC
Q 009954 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (521)
Q Consensus 174 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~~~~~~~~~~~~v~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 248 (521)
+-+|.|+.||+.+||+++.+.+..+=.+--+.- -+++.-. -...-.-|||.|.+.++..... .++|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~f-v~G~~s~---~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEF-FAADLSL---YPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCC-CCCCSSS---CCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEE-eCCccCC---CCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 457999999999999998766654311000000 0000000 0011257999999999999988 699988754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.73 E-value=1.5 Score=44.47 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=44.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHc
Q 009954 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (521)
Q Consensus 295 ~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~ 357 (521)
..++|+ +|..+...+|.++|+.||.| .|.++.+. .|||.|.+.+.|..+++.+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 445555 99999999999999999954 56665552 59999999999999999885
No 402
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=76.54 E-value=0.57 Score=26.09 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.2
Q ss_pred CCCCCCCCccCCCCCCC
Q 009954 112 SGFDMAPPAAAMLPGAA 128 (521)
Q Consensus 112 ~~~d~~~~~~~~~~~~~ 128 (521)
..||.+|+||+.+++++
T Consensus 6 ~~WDvpP~GyE~vtp~q 22 (28)
T 1jmt_B 6 KYWDVPPPGFEHITPMQ 22 (28)
T ss_dssp CCBTCCCTTCTTSCHHH
T ss_pred cccCCCCCCccccCHHH
Confidence 37999999999988653
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=59.59 E-value=24 Score=24.76 Aligned_cols=59 Identities=7% Similarity=0.106 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHhcCC-----eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcCCeeCCeEEEEEEcc
Q 009954 305 YFTETQIKELLESFGT-----LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (521)
Q Consensus 305 ~~te~~l~~~F~~~G~-----i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~l~v~~~~ 372 (521)
.+...+|..++..-+. |-.|.|..+ |.||+-.... |..+++.|++..+.|+.+.|..+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 3566777777775444 445666443 6899987655 778899999999999999998763
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=59.38 E-value=24 Score=35.60 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=33.6
Q ss_pred HHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhC
Q 009954 444 EDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSG 496 (521)
Q Consensus 444 ~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng 496 (521)
.+|.++|+.||.| .|.-+-+ -+|||.|.+.+.|..++..++.
T Consensus 454 ~~i~~~fs~fg~v-~V~widd----------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 454 SDLYQLFSAFGNI-QISWIDD----------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHHHGGGGCCC-EEEECSS----------SEEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCE-EEEEEcC----------CeEEEEECCHHHHHHHHHHHHh
Confidence 5999999999954 4443333 3789999999999999999863
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=50.13 E-value=69 Score=23.12 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHHHcC
Q 009954 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358 (521)
Q Consensus 294 ~~~l~v~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~l~g 358 (521)
.+-|.|-|+|..+-..++.-.....|---.+..+- |-|.|.|.+.++...|+..|-+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 35688999999999998887777777766666543 3499999999999999988743
No 406
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=46.37 E-value=54 Score=25.95 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=22.6
Q ss_pred ccceeEEEecCCCCCCCCCCCccEEEEE-ecCHHHHHHHHHHHh
Q 009954 453 YGTLVNVVIPRPDQNGGETPGVGKVFLE-YYDAVGCATAKNALS 495 (521)
Q Consensus 453 fG~I~~v~i~~~~~~~~~~~g~g~afV~-F~~~~~A~~Ai~~ln 495 (521)
+-+|..|.+-.|-. ...+||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~-------~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFS-------ACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSC-------CEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCc-------EEEEEEEecCChhhHHHHHHHHH
Confidence 56899999988752 2556777 655554444444443
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.07 E-value=58 Score=27.18 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=35.7
Q ss_pred CeEEEcCCCC-C--------CCHHHHHHHH--HhcCCeeEEEEeecCCCCCcceEEEEEEcChHH
Q 009954 295 DRVFVGGLPY-Y--------FTETQIKELL--ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAV 348 (521)
Q Consensus 295 ~~l~v~nLp~-~--------~te~~l~~~F--~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 348 (521)
-.+.|.|+|. . ....+|.+.| +.|.++. |+....+ ....|+|.|+|...-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChH
Confidence 3677889887 2 2347899977 8999876 4444442 2368899999988543
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=35.66 E-value=68 Score=23.59 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=26.7
Q ss_pred eeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCC
Q 009954 456 LVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGR 497 (521)
Q Consensus 456 I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~ 497 (521)
|..|.++..- .||.||++.-.++...+|..+.|.
T Consensus 40 i~~v~vP~~f--------PGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASESL--------KGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTTS--------TTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEeccc--------CCEEEEEEecchhHHHHHHCCCCc
Confidence 7788887532 289999999999988888876664
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=33.93 E-value=1.2e+02 Score=21.96 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.5
Q ss_pred cEEEEEecCHHHHHHHHHHHhCC
Q 009954 475 GKVFLEYYDAVGCATAKNALSGR 497 (521)
Q Consensus 475 g~afV~F~~~~~A~~Ai~~lng~ 497 (521)
|.|++.|.+.++-..||+.|-++
T Consensus 47 gqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 47 GQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp SCEEEEESSHHHHHHHHHHHEET
T ss_pred CeeEEEecCChHHHHHHHHHHhc
Confidence 78899999999999999988654
No 410
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=31.54 E-value=54 Score=22.87 Aligned_cols=43 Identities=7% Similarity=0.076 Sum_probs=31.3
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCeeCCcEEEEEEc
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKFGGNTVNAFYY 509 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~~gr~l~v~~~ 509 (521)
.|=.|.|.. .+.||+-.. +.|..+++.|++..+.|+.+.+..+
T Consensus 32 ~IG~I~i~d-----------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 32 DIGIITIMD-----------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp GEEEEEECS-----------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred hccEEEEeC-----------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 567777754 356888765 6788999999999999999998765
No 411
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=28.20 E-value=1.7e+02 Score=21.94 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 437 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 437 ~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
..|+.+.+.|.++|.......-..--+|. .|. .|.|.+-++-..|+..++
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~De-dGD--------lItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRAE-RGD--------LVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECT-TCC--------EEEECSHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEECC-CCC--------EEEecCHHHHHHHHHhcC
Confidence 36889999999999765543222223333 444 899999999999999765
No 412
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=21.83 E-value=2.6e+02 Score=21.59 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhccccceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHh
Q 009954 437 EEYEEILEDMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALS 495 (521)
Q Consensus 437 ~~~~~~~~dl~~~f~~fG~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~ln 495 (521)
..|+.+.+.|..+|.......-..--+|. .|. .|.|.+-++-..|+..++
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkDE-dGD--------lItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRAE-RGD--------LVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECT-TCC--------EEEECSHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEECC-CCC--------EEEecCHHHHHHHHHhcC
Confidence 47889999999999654433222223333 444 899999999999999765
No 413
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=21.42 E-value=76 Score=24.13 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=29.2
Q ss_pred ceeEEEecCCCCCCCCCCCccEEEEEecCHHHHHHHHHHHhCCee
Q 009954 455 TLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKNALSGRKF 499 (521)
Q Consensus 455 ~I~~v~i~~~~~~~~~~~g~g~afV~F~~~~~A~~Ai~~lng~~~ 499 (521)
.|.+|..+..- +|+.|||=.+..+...||+.+.+.+.
T Consensus 40 ~I~Si~~~~~l--------kGyIyVEA~~~~~V~~ai~gi~~v~~ 76 (106)
T 3h7h_B 40 QIKSVVAPEHV--------KGYIYVEAYKQTHVKQAIEGVGNLRL 76 (106)
T ss_dssp CCCEEEECTTC--------CSEEEEEESSHHHHHHHHTTCGGGGG
T ss_pred ceEEEEecCCC--------ceEEEEEeCCHHHHHHHHhcccceec
Confidence 48888776543 49999999999999999987766543
No 414
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.25 E-value=2.5e+02 Score=20.29 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=39.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcceEEEEEEcChHHHHHHHHH
Q 009954 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (521)
Q Consensus 297 l~v~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Al~~ 355 (521)
-++--.....+..+|++.++. |+. |..|....-+ .| .--|||.+..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHHh
Confidence 344456778999999999995 553 6677655543 23 23599999988877765544
Done!