Query 009955
Match_columns 521
No_of_seqs 259 out of 1355
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 19:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02891 IMP cyclohydrolase 100.0 1E-184 3E-189 1450.6 47.1 467 53-521 1-468 (547)
2 TIGR00355 purH phosphoribosyla 100.0 3E-177 7E-182 1392.6 45.5 428 76-521 1-431 (511)
3 COG0138 PurH AICAR transformyl 100.0 6E-175 1E-179 1360.7 41.2 430 74-521 1-435 (515)
4 PRK00881 purH bifunctional pho 100.0 5E-172 1E-176 1357.2 46.6 430 74-521 3-433 (513)
5 KOG2555 AICAR transformylase/I 100.0 5E-129 1E-133 997.8 33.3 415 74-521 3-446 (588)
6 PF01808 AICARFT_IMPCHas: AICA 100.0 5E-122 1E-126 930.9 27.4 299 208-521 1-303 (315)
7 smart00798 AICARFT_IMPCHas AIC 100.0 2E-121 3E-126 925.2 30.2 297 208-521 1-299 (311)
8 cd01421 IMPCH Inosine monophos 100.0 1.3E-84 2.7E-89 617.6 18.9 186 76-263 1-187 (187)
9 PRK07106 5-aminoimidazole-4-ca 100.0 3.3E-84 7.2E-89 665.1 23.5 218 284-521 3-248 (390)
10 PF02142 MGS: MGS-like domain 99.7 1.4E-17 3.1E-22 141.4 5.2 95 87-203 1-95 (95)
11 smart00851 MGS MGS-like domain 99.5 1.8E-14 3.8E-19 121.1 6.3 90 87-203 1-90 (90)
12 cd00532 MGS-like MGS-like doma 99.5 5.7E-14 1.2E-18 122.9 8.8 107 78-225 2-110 (112)
13 cd01423 MGS_CPS_I_III Methylgl 99.1 4.8E-10 1E-14 98.2 8.9 53 76-128 1-55 (116)
14 cd01424 MGS_CPS_II Methylglyox 98.9 1.6E-09 3.5E-14 93.9 5.4 51 76-126 1-53 (110)
15 PRK05234 mgsA methylglyoxal sy 98.8 9.3E-09 2E-13 94.9 7.9 117 74-232 3-124 (142)
16 PRK05294 carB carbamoyl phosph 98.7 5.9E-08 1.3E-12 113.1 9.8 114 74-233 936-1051(1066)
17 PLN02735 carbamoyl-phosphate s 98.6 1.3E-07 2.8E-12 111.0 9.2 53 74-126 971-1025(1102)
18 cd01422 MGS Methylglyoxal synt 98.4 1.8E-07 3.8E-12 83.2 4.4 47 78-125 3-53 (115)
19 PRK12815 carB carbamoyl phosph 98.3 7.2E-07 1.6E-11 104.4 5.9 113 74-232 936-1050(1068)
20 TIGR01369 CPSaseII_lrg carbamo 98.2 1.5E-06 3.3E-11 101.5 5.9 111 74-229 936-1048(1050)
21 PF06506 PrpR_N: Propionate ca 93.2 0.098 2.1E-06 49.4 4.0 135 80-232 14-161 (176)
22 PF06230 DUF1009: Protein of u 90.7 0.4 8.6E-06 47.9 5.1 44 474-517 84-130 (214)
23 KOG0370 Multifunctional pyrimi 89.5 0.33 7.2E-06 57.3 3.9 40 76-115 1298-1338(1435)
24 PRK07523 gluconate 5-dehydroge 80.7 7.5 0.00016 37.3 7.9 127 76-222 11-148 (255)
25 PF11009 DUF2847: Protein of u 78.3 0.75 1.6E-05 41.3 0.3 61 343-405 18-81 (105)
26 PRK07102 short chain dehydroge 67.9 40 0.00087 32.0 9.3 127 76-221 2-136 (243)
27 PF07799 DUF1643: Protein of u 67.7 8.1 0.00017 35.0 4.3 69 138-212 19-87 (136)
28 PRK08264 short chain dehydroge 65.8 48 0.001 31.3 9.3 121 76-223 7-136 (238)
29 PRK07097 gluconate 5-dehydroge 62.7 44 0.00095 32.4 8.6 126 76-221 11-147 (265)
30 PF13528 Glyco_trans_1_3: Glyc 62.4 8.7 0.00019 38.1 3.8 96 76-178 1-105 (318)
31 COG1936 Predicted nucleotide k 62.0 13 0.00029 36.6 4.8 111 88-218 13-136 (180)
32 PRK08862 short chain dehydroge 61.7 18 0.00039 35.0 5.8 39 76-114 6-44 (227)
33 PRK06101 short chain dehydroge 60.1 93 0.002 29.7 10.3 39 76-114 2-40 (240)
34 PRK09186 flagellin modificatio 59.1 54 0.0012 31.2 8.4 37 76-112 5-41 (256)
35 PRK05693 short chain dehydroge 56.4 1.7E+02 0.0037 28.5 11.5 38 76-113 2-39 (274)
36 PRK12743 oxidoreductase; Provi 56.1 32 0.0007 33.1 6.4 30 76-105 3-32 (256)
37 TIGR02717 AcCoA-syn-alpha acet 55.4 97 0.0021 33.8 10.6 161 76-255 267-446 (447)
38 PRK04017 hypothetical protein; 55.4 56 0.0012 30.7 7.5 66 155-244 32-104 (132)
39 PRK05867 short chain dehydroge 54.6 43 0.00093 32.1 7.0 39 76-114 10-48 (253)
40 PRK08267 short chain dehydroge 54.6 50 0.0011 31.7 7.5 39 76-114 2-40 (260)
41 TIGR00661 MJ1255 conserved hyp 54.4 25 0.00055 35.7 5.6 42 77-119 1-49 (321)
42 TIGR03206 benzo_BadH 2-hydroxy 54.2 44 0.00096 31.6 6.9 37 76-112 4-40 (250)
43 COG0300 DltE Short-chain dehyd 53.7 30 0.00065 35.8 6.0 103 74-205 5-120 (265)
44 TIGR02329 propionate_PrpR prop 53.5 82 0.0018 35.4 9.8 139 80-232 34-180 (526)
45 PRK06500 short chain dehydroge 52.3 57 0.0012 30.8 7.3 38 76-113 7-44 (249)
46 PRK07060 short chain dehydroge 51.6 1.5E+02 0.0033 27.9 10.0 38 76-113 10-47 (245)
47 PRK08085 gluconate 5-dehydroge 51.4 60 0.0013 31.1 7.4 39 76-114 10-48 (254)
48 PRK13394 3-hydroxybutyrate deh 51.0 49 0.0011 31.5 6.7 37 76-112 8-44 (262)
49 cd06578 HemD Uroporphyrinogen- 50.9 70 0.0015 30.0 7.6 124 84-232 57-193 (239)
50 PRK07806 short chain dehydroge 50.5 1.9E+02 0.0042 27.4 10.6 32 76-107 7-38 (248)
51 PRK05650 short chain dehydroge 50.4 1.2E+02 0.0026 29.5 9.3 37 77-113 2-38 (270)
52 PRK08220 2,3-dihydroxybenzoate 50.1 1.2E+02 0.0025 28.9 9.0 33 76-108 9-41 (252)
53 PRK08303 short chain dehydroge 50.0 1.5E+02 0.0033 30.1 10.4 31 76-106 9-39 (305)
54 PRK06181 short chain dehydroge 49.5 90 0.002 30.0 8.3 129 76-224 2-141 (263)
55 TIGR00160 MGSA methylglyoxal s 49.1 30 0.00065 33.0 4.8 113 77-231 5-121 (143)
56 PRK06179 short chain dehydroge 48.2 84 0.0018 30.4 7.9 119 76-222 5-134 (270)
57 PRK07576 short chain dehydroge 48.1 55 0.0012 31.9 6.7 38 76-113 10-47 (264)
58 PRK07454 short chain dehydroge 47.9 34 0.00074 32.4 5.1 41 73-113 4-44 (241)
59 PF08973 TM1506: Domain of unk 47.1 46 0.001 31.3 5.6 90 333-438 2-91 (134)
60 TIGR01686 FkbH FkbH-like domai 46.9 50 0.0011 34.0 6.5 39 206-244 116-158 (320)
61 PRK11780 isoprenoid biosynthes 46.9 78 0.0017 31.5 7.6 113 99-222 16-138 (217)
62 COG2240 PdxK Pyridoxal/pyridox 46.8 30 0.00065 36.3 4.8 81 313-401 144-227 (281)
63 PLN02384 ribose-5-phosphate is 46.5 17 0.00037 37.7 3.0 25 488-520 36-60 (264)
64 PRK11009 aphA acid phosphatase 45.7 51 0.0011 33.3 6.1 84 85-170 116-210 (237)
65 PF03033 Glyco_transf_28: Glyc 44.8 44 0.00095 29.1 4.9 41 84-124 11-53 (139)
66 TIGR03590 PseG pseudaminic aci 44.5 72 0.0016 32.3 7.0 93 88-226 20-117 (279)
67 PRK06124 gluconate 5-dehydroge 44.4 1.3E+02 0.0028 28.8 8.4 40 75-114 11-50 (256)
68 PRK04247 hypothetical protein; 44.1 27 0.00058 35.8 3.9 28 414-443 208-235 (238)
69 PRK12481 2-deoxy-D-gluconate 3 44.0 1.3E+02 0.0028 29.1 8.5 31 76-106 9-39 (251)
70 PRK05866 short chain dehydroge 43.7 72 0.0016 32.0 6.9 39 76-114 41-79 (293)
71 PRK08213 gluconate 5-dehydroge 43.5 1.2E+02 0.0026 29.2 8.1 38 76-113 13-50 (259)
72 cd02169 Citrate_lyase_ligase C 42.4 3.6E+02 0.0078 28.3 11.9 113 93-250 52-170 (297)
73 PRK06947 glucose-1-dehydrogena 42.2 2.3E+02 0.0049 26.9 9.7 31 75-105 2-32 (248)
74 PLN02448 UDP-glycosyltransfera 42.1 83 0.0018 34.3 7.5 104 73-183 9-125 (459)
75 PRK08277 D-mannonate oxidoredu 41.9 79 0.0017 30.8 6.7 38 76-113 11-48 (278)
76 PRK07063 short chain dehydroge 41.3 64 0.0014 31.0 5.9 38 76-113 8-45 (260)
77 PRK05928 hemD uroporphyrinogen 41.2 1.4E+02 0.0031 28.4 8.2 126 84-232 60-197 (249)
78 COG1803 MgsA Methylglyoxal syn 40.8 67 0.0015 30.6 5.6 51 74-124 4-58 (142)
79 PRK07231 fabG 3-ketoacyl-(acyl 40.7 1.6E+02 0.0034 27.8 8.3 38 76-113 6-43 (251)
80 PRK06128 oxidoreductase; Provi 40.5 2.1E+02 0.0046 28.6 9.6 30 76-105 56-85 (300)
81 PF00106 adh_short: short chai 40.2 46 0.00099 29.5 4.4 121 76-223 1-138 (167)
82 KOG4127 Renal dipeptidase [Pos 40.1 79 0.0017 34.7 6.7 85 150-247 283-382 (419)
83 PRK07856 short chain dehydroge 38.9 1.4E+02 0.0029 28.7 7.7 34 76-109 7-40 (252)
84 PF13524 Glyco_trans_1_2: Glyc 38.8 1.2E+02 0.0025 24.8 6.3 47 204-253 32-78 (92)
85 PRK07666 fabG 3-ketoacyl-(acyl 38.8 1.5E+02 0.0032 28.1 7.8 127 76-222 8-145 (239)
86 PRK09134 short chain dehydroge 38.6 3.7E+02 0.0079 25.9 10.7 34 74-107 8-41 (258)
87 TIGR01382 PfpI intracellular p 38.5 1.2E+02 0.0026 27.5 6.9 63 85-174 78-142 (166)
88 cd04732 HisA HisA. Phosphorib 38.5 60 0.0013 31.3 5.2 75 87-179 30-107 (234)
89 PRK07775 short chain dehydroge 38.2 1.7E+02 0.0036 28.7 8.4 127 75-221 10-147 (274)
90 COG2355 Zn-dependent dipeptida 37.6 97 0.0021 33.0 6.9 84 150-247 201-301 (313)
91 PRK09291 short chain dehydroge 37.1 1.7E+02 0.0037 27.8 8.0 35 76-110 3-37 (257)
92 COG3494 Uncharacterized protei 37.1 53 0.0011 34.4 4.7 43 474-516 141-186 (279)
93 PRK06138 short chain dehydroge 36.9 2.1E+02 0.0046 27.0 8.6 38 76-113 6-43 (252)
94 TIGR01963 PHB_DH 3-hydroxybuty 36.8 76 0.0016 30.0 5.6 34 76-109 2-35 (255)
95 PRK12429 3-hydroxybutyrate deh 36.4 1.6E+02 0.0035 27.9 7.7 38 76-113 5-42 (258)
96 PRK07985 oxidoreductase; Provi 36.1 2.9E+02 0.0064 27.7 9.9 31 76-106 50-80 (294)
97 PRK15424 propionate catabolism 35.9 1.1E+02 0.0024 34.6 7.4 132 87-232 51-190 (538)
98 PRK12745 3-ketoacyl-(acyl-carr 35.7 3E+02 0.0065 26.2 9.4 33 76-108 3-35 (256)
99 COG3967 DltE Short-chain dehyd 35.5 1.2E+02 0.0026 31.3 6.8 107 77-208 7-119 (245)
100 COG2185 Sbm Methylmalonyl-CoA 35.4 2.1E+02 0.0045 27.4 8.0 86 74-179 11-106 (143)
101 KOG1205 Predicted dehydrogenas 35.3 3.7E+02 0.008 28.3 10.6 157 76-264 13-183 (282)
102 PF01071 GARS_A: Phosphoribosy 35.3 59 0.0013 32.2 4.6 56 325-381 19-77 (194)
103 PF13561 adh_short_C2: Enoyl-( 34.9 1E+02 0.0022 29.5 6.1 95 89-210 10-121 (241)
104 PRK08589 short chain dehydroge 34.2 2.5E+02 0.0053 27.5 8.8 33 76-108 7-39 (272)
105 PRK06914 short chain dehydroge 34.2 1.6E+02 0.0035 28.6 7.4 38 76-113 4-41 (280)
106 PRK05993 short chain dehydroge 33.9 4.7E+02 0.01 25.7 11.1 38 76-113 5-42 (277)
107 PRK13361 molybdenum cofactor b 33.8 1.9E+02 0.004 30.1 8.2 50 74-123 61-121 (329)
108 PRK12744 short chain dehydroge 33.4 4.4E+02 0.0096 25.3 10.9 30 76-105 9-38 (257)
109 PRK07478 short chain dehydroge 32.6 1.1E+02 0.0024 29.2 6.0 39 76-114 7-45 (254)
110 COG1184 GCD2 Translation initi 32.4 91 0.002 33.1 5.7 50 76-125 120-179 (301)
111 PRK08936 glucose-1-dehydrogena 32.2 2.8E+02 0.006 26.7 8.7 33 75-107 7-39 (261)
112 PRK07792 fabG 3-ketoacyl-(acyl 32.2 4.2E+02 0.0091 26.7 10.3 31 76-106 13-43 (306)
113 PRK04155 chaperone protein Hch 31.8 71 0.0015 33.2 4.8 128 76-222 50-190 (287)
114 PRK00726 murG undecaprenyldiph 31.6 63 0.0014 32.7 4.3 49 76-124 2-58 (357)
115 PRK07890 short chain dehydroge 31.6 3.3E+02 0.0071 25.9 9.0 38 76-113 6-43 (258)
116 PRK07035 short chain dehydroge 31.3 2.6E+02 0.0056 26.6 8.2 37 76-112 9-45 (252)
117 PRK06603 enoyl-(acyl carrier p 31.2 5.1E+02 0.011 25.3 10.4 125 76-222 9-149 (260)
118 TIGR01133 murG undecaprenyldip 31.2 73 0.0016 31.7 4.6 47 77-123 2-56 (348)
119 PRK07109 short chain dehydroge 31.0 2.5E+02 0.0054 29.0 8.6 39 76-114 9-47 (334)
120 TIGR02415 23BDH acetoin reduct 30.7 1.3E+02 0.0029 28.5 6.2 35 76-110 1-35 (254)
121 PRK08643 acetoin reductase; Va 30.7 1.3E+02 0.0028 28.7 6.1 35 76-110 3-37 (256)
122 PRK05627 bifunctional riboflav 30.5 1.3E+02 0.0028 31.6 6.4 64 153-224 72-156 (305)
123 PRK11133 serB phosphoserine ph 30.4 1.4E+02 0.0031 31.3 6.8 82 85-173 183-270 (322)
124 PRK05653 fabG 3-ketoacyl-(acyl 30.4 2.3E+02 0.005 26.4 7.6 37 76-112 6-42 (246)
125 PRK08339 short chain dehydroge 30.3 1.3E+02 0.0028 29.5 6.1 37 76-112 9-45 (263)
126 cd01301 rDP_like renal dipepti 30.2 1.2E+02 0.0027 31.7 6.2 80 152-247 208-304 (309)
127 PRK07825 short chain dehydroge 30.2 1.6E+02 0.0035 28.5 6.7 39 76-114 6-44 (273)
128 PRK05872 short chain dehydroge 30.1 89 0.0019 31.3 5.0 39 76-114 10-48 (296)
129 TIGR01426 MGT glycosyltransfer 30.1 1.1E+02 0.0023 31.8 5.8 43 84-126 8-52 (392)
130 COG0569 TrkA K+ transport syst 29.9 1.2E+02 0.0026 30.0 5.9 94 90-231 14-112 (225)
131 PRK07062 short chain dehydroge 29.8 83 0.0018 30.3 4.6 39 76-114 9-47 (265)
132 PF02602 HEM4: Uroporphyrinoge 29.6 71 0.0015 30.4 4.1 126 84-232 50-188 (231)
133 PLN02389 biotin synthase 29.3 1.4E+02 0.0031 32.2 6.7 80 86-175 153-237 (379)
134 PRK07832 short chain dehydroge 29.2 1.3E+02 0.0029 29.3 6.0 37 77-113 2-38 (272)
135 TIGR03363 VI_chp_8 type VI sec 29.2 40 0.00086 35.8 2.5 64 352-441 12-77 (353)
136 PRK06125 short chain dehydroge 29.0 1.5E+02 0.0032 28.6 6.2 39 76-114 8-46 (259)
137 PRK00536 speE spermidine synth 29.0 42 0.0009 34.6 2.5 62 106-177 84-150 (262)
138 PRK07774 short chain dehydroge 28.9 1.2E+02 0.0027 28.7 5.6 37 76-112 7-43 (250)
139 PLN03209 translocon at the inn 28.7 6.2E+02 0.013 29.3 11.8 39 74-112 79-117 (576)
140 PRK06172 short chain dehydroge 28.7 85 0.0018 29.9 4.5 38 76-113 8-45 (253)
141 PRK12859 3-ketoacyl-(acyl-carr 28.7 4.2E+02 0.0091 25.6 9.3 30 76-105 7-38 (256)
142 TIGR01832 kduD 2-deoxy-D-gluco 28.6 2.7E+02 0.0058 26.4 7.8 32 76-107 6-37 (248)
143 PRK08340 glucose-1-dehydrogena 28.5 1.5E+02 0.0033 28.6 6.2 38 77-114 2-39 (259)
144 PF09989 DUF2229: CoA enzyme a 28.4 5.1E+02 0.011 25.9 10.0 142 91-261 17-169 (221)
145 TIGR02660 nifV_homocitr homoci 28.3 1.7E+02 0.0036 31.1 7.0 59 151-216 72-130 (365)
146 PF01939 DUF91: Protein of unk 28.2 50 0.0011 33.6 2.9 30 412-443 183-212 (228)
147 PF01548 DEDD_Tnp_IS110: Trans 28.2 32 0.00069 30.7 1.4 60 79-138 25-94 (144)
148 PRK06194 hypothetical protein; 28.1 1.8E+02 0.004 28.3 6.8 39 76-114 7-45 (287)
149 PRK09072 short chain dehydroge 28.1 5.4E+02 0.012 24.8 9.9 38 76-113 6-43 (263)
150 PF13173 AAA_14: AAA domain 28.0 91 0.002 27.5 4.2 45 85-141 73-121 (128)
151 PRK13790 phosphoribosylamine-- 27.9 20 0.00043 38.0 -0.0 118 80-231 11-134 (379)
152 PRK12823 benD 1,6-dihydroxycyc 27.8 5.4E+02 0.012 24.6 10.9 32 76-107 9-40 (260)
153 PLN02173 UDP-glucosyl transfer 27.6 1.2E+02 0.0027 33.3 6.0 94 84-184 18-122 (449)
154 PRK08177 short chain dehydroge 27.5 1.8E+02 0.0039 27.4 6.4 35 76-110 2-36 (225)
155 PRK09242 tropinone reductase; 27.4 98 0.0021 29.7 4.6 39 76-114 10-48 (257)
156 PRK06139 short chain dehydroge 27.1 1.7E+02 0.0036 30.4 6.6 39 76-114 8-46 (330)
157 PRK07677 short chain dehydroge 27.0 2.1E+02 0.0045 27.4 6.8 38 76-113 2-39 (252)
158 PRK06114 short chain dehydroge 26.9 5.6E+02 0.012 24.6 9.8 32 76-107 9-40 (254)
159 PLN02572 UDP-sulfoquinovose sy 26.8 1.4E+02 0.003 32.4 6.1 38 69-106 41-78 (442)
160 PRK08263 short chain dehydroge 26.8 3.5E+02 0.0076 26.4 8.5 39 76-114 4-42 (275)
161 PRK00208 thiG thiazole synthas 26.6 1.3E+02 0.0028 31.2 5.5 96 73-174 92-204 (250)
162 KOG1610 Corticosteroid 11-beta 26.3 1E+02 0.0022 33.0 4.9 31 76-106 30-60 (322)
163 PRK07791 short chain dehydroge 26.2 4E+02 0.0086 26.5 8.9 31 76-106 7-37 (286)
164 PRK07315 fructose-bisphosphate 26.1 2.2E+02 0.0048 29.7 7.2 58 202-259 64-133 (293)
165 PRK01033 imidazole glycerol ph 26.1 1.2E+02 0.0026 30.6 5.2 95 87-221 31-131 (258)
166 PRK06398 aldose dehydrogenase; 26.0 1.7E+02 0.0037 28.4 6.1 32 76-107 7-38 (258)
167 PRK13973 thymidylate kinase; P 25.7 82 0.0018 30.5 3.8 81 86-182 18-103 (213)
168 PF05221 AdoHcyase: S-adenosyl 25.4 45 0.00098 34.8 2.0 98 78-175 46-179 (268)
169 TIGR03467 HpnE squalene-associ 25.4 98 0.0021 31.6 4.5 56 108-167 2-63 (419)
170 TIGR01458 HAD-SF-IIA-hyp3 HAD- 25.4 6.9E+02 0.015 25.0 10.6 45 74-118 37-87 (257)
171 PRK07239 bifunctional uroporph 25.1 1.1E+02 0.0024 32.2 4.9 127 85-231 73-220 (381)
172 PRK11858 aksA trans-homoaconit 24.9 2.9E+02 0.0063 29.6 8.0 60 151-217 75-134 (378)
173 cd04908 ACT_Bt0572_1 N-termina 24.8 1.2E+02 0.0027 23.7 4.0 32 75-106 1-33 (66)
174 PRK08226 short chain dehydroge 24.6 6.3E+02 0.014 24.2 9.8 34 76-109 7-40 (263)
175 PRK05301 pyrroloquinoline quin 24.6 2.2E+02 0.0048 29.9 7.0 83 75-166 63-156 (378)
176 PRK08217 fabG 3-ketoacyl-(acyl 24.5 1.2E+02 0.0026 28.5 4.6 39 76-114 6-44 (253)
177 PF04210 MtrG: Tetrahydrometha 24.3 39 0.00085 28.8 1.1 17 216-232 6-22 (70)
178 COG4221 Short-chain alcohol de 24.3 2E+02 0.0042 29.9 6.3 124 76-222 7-142 (246)
179 PRK06483 dihydromonapterin red 23.9 2E+02 0.0044 27.1 6.0 34 75-108 2-35 (236)
180 PRK06953 short chain dehydroge 23.7 2.5E+02 0.0054 26.4 6.5 37 76-112 2-38 (222)
181 PRK12748 3-ketoacyl-(acyl-carr 23.3 6.7E+02 0.014 24.0 11.2 31 76-106 6-38 (256)
182 PRK11188 rrmJ 23S rRNA methylt 23.2 3.8E+02 0.0082 26.1 7.9 66 161-233 111-180 (209)
183 PF14394 DUF4423: Domain of un 23.2 69 0.0015 30.8 2.7 32 209-246 119-150 (171)
184 PRK01026 tetrahydromethanopter 23.1 37 0.00081 29.4 0.8 17 216-232 9-25 (77)
185 cd04728 ThiG Thiazole synthase 23.1 2E+02 0.0044 29.8 6.1 95 73-174 92-204 (248)
186 PLN02978 pyridoxal kinase 22.8 2.5E+02 0.0055 29.0 6.9 88 95-222 38-125 (308)
187 PRK12827 short chain dehydroge 22.5 3.4E+02 0.0073 25.4 7.2 29 76-104 7-35 (249)
188 PF05913 DUF871: Bacterial pro 22.5 1E+02 0.0022 33.1 4.1 103 74-181 27-151 (357)
189 PRK05692 hydroxymethylglutaryl 22.5 3.6E+02 0.0079 27.9 7.9 56 153-215 81-136 (287)
190 PRK08265 short chain dehydroge 22.5 1.6E+02 0.0035 28.6 5.1 38 76-113 7-44 (261)
191 TIGR02198 rfaE_dom_I rfaE bifu 22.5 3.4E+02 0.0074 27.0 7.6 41 87-127 49-98 (315)
192 TIGR00124 cit_ly_ligase [citra 22.4 7.7E+02 0.017 26.3 10.5 71 155-253 126-198 (332)
193 TIGR00290 MJ0570_dom MJ0570-re 22.4 3.6E+02 0.0078 27.3 7.7 71 84-180 70-149 (223)
194 PLN02257 phosphoribosylamine-- 22.3 34 0.00073 37.3 0.5 117 80-231 46-169 (434)
195 PRK07984 enoyl-(acyl carrier p 22.3 4.4E+02 0.0096 26.0 8.3 32 76-107 7-40 (262)
196 KOG0725 Reductases with broad 22.2 1.8E+02 0.0039 29.7 5.6 121 74-210 7-134 (270)
197 PRK05565 fabG 3-ketoacyl-(acyl 22.2 3.7E+02 0.0079 25.2 7.3 31 75-105 5-35 (247)
198 PRK06720 hypothetical protein; 21.9 2.6E+02 0.0057 26.3 6.3 37 76-112 17-53 (169)
199 TIGR01149 mtrG N5-methyltetrah 21.8 44 0.00094 28.5 0.9 17 216-232 6-22 (70)
200 PRK02399 hypothetical protein; 21.7 3.1E+02 0.0067 30.4 7.5 93 75-179 186-290 (406)
201 PRK12742 oxidoreductase; Provi 21.3 6.8E+02 0.015 23.4 10.9 31 76-106 7-37 (237)
202 PLN02854 3-ketoacyl-CoA syntha 21.2 77 0.0017 35.9 3.0 60 159-220 199-277 (521)
203 cd01427 HAD_like Haloacid deha 21.2 1.9E+02 0.0042 23.6 4.8 33 85-117 26-63 (139)
204 PRK12936 3-ketoacyl-(acyl-carr 21.2 4.8E+02 0.01 24.4 7.9 39 76-114 7-45 (245)
205 TIGR01917 gly_red_sel_B glycin 20.8 1.2E+02 0.0026 33.7 4.2 56 85-141 322-394 (431)
206 PLN02377 3-ketoacyl-CoA syntha 20.7 1.4E+02 0.003 33.7 4.8 59 159-219 183-260 (502)
207 COG0773 MurC UDP-N-acetylmuram 20.7 2.5E+02 0.0055 31.6 6.7 70 85-166 17-92 (459)
208 PRK08176 pdxK pyridoxal-pyrido 20.5 7E+02 0.015 25.2 9.4 75 79-177 18-98 (281)
209 TIGR00624 tag DNA-3-methyladen 20.5 84 0.0018 30.9 2.7 30 88-117 139-168 (179)
210 PLN03194 putative disease resi 20.5 1.6E+02 0.0034 29.4 4.6 38 67-104 18-59 (187)
211 PF01808 AICARFT_IMPCHas: AICA 20.4 1.8E+02 0.0039 31.1 5.3 49 471-519 104-153 (315)
212 PRK06949 short chain dehydroge 20.3 2.3E+02 0.005 26.9 5.6 38 76-113 10-47 (258)
213 TIGR01428 HAD_type_II 2-haloal 20.1 5.1E+02 0.011 24.0 7.8 33 85-117 94-131 (198)
No 1
>PLN02891 IMP cyclohydrolase
Probab=100.00 E-value=1.5e-184 Score=1450.56 Aligned_cols=467 Identities=83% Similarity=1.242 Sum_probs=433.4
Q ss_pred ccccCcccccCCCCCCCCCCCCCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCC
Q 009955 53 MAHSHTVSVPTNQPQSSSSSQANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEML 132 (521)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEil 132 (521)
||.+.+.+-.+.+||++.||+ .+|||||||||+||++||+.|.++||||+|||||+++|+++||+|++|+++|||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~krALISVsDKtgi~~fAk~L~~~gveIiSTgGTak~L~e~Gi~v~~Vsd~TgfPEiL 79 (547)
T PLN02891 1 MAASATAARAPAQPQSSPSSG-KKQALISLSDKTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEML 79 (547)
T ss_pred CCcccccccccccccCCCCcc-ccEEEEEEecccCHHHHHHHHHHCCCEEEEcchHHHHHHHcCCceeeHHhccCCchhh
Confidence 344445444555677655555 8899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccchhhcccccCCCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCC
Q 009955 133 DGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNH 212 (521)
Q Consensus 133 dGRVKTLHPkIhgGILarr~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~ 212 (521)
|||||||||+||||||+||++++|+++|++|||++|||||||||||++||+++ ++++||+|||||||||||||||||||
T Consensus 80 ~GRVKTLHPkIhgGILa~r~~~~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~-~~~~ee~IEnIDIGGpsmlRAAAKN~ 158 (547)
T PLN02891 80 DGRVKTLHPAVHGGILARRDQEHHMEALNEHGIGTIDVVVVNLYPFYDTVTSG-GISFEDGVENIDIGGPAMIRAAAKNH 158 (547)
T ss_pred CCcccccCchhhhhhhcCCCCHHHHHHHHHcCCCceeeEEEeccChHHHHhcC-CCCHHHHHHhccCCcHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999986 89999999999999999999999999
Q ss_pred CCEEEEeCCCCHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCceeeccccccccccCC
Q 009955 213 KDVLVVVGSEDYPALLEFLKGNQDDQ-QFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGE 291 (521)
Q Consensus 213 ~~V~Vv~dP~DY~~vl~el~~g~~s~-~~R~~LA~KAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGE 291 (521)
++|+|||||+||+.++++|+.|.+++ ++|++||.|||+|||+||++|++||+++.+.+..||+.+.+.|++.|+|||||
T Consensus 159 ~~V~Vv~dP~DY~~vl~el~~g~~~~~~~R~~LA~kAF~~Ta~YD~~Ia~yl~~~~~~~~~~p~~~~~~~~k~~~LRYGE 238 (547)
T PLN02891 159 KDVLVVVDPADYPALLEYLKGKQDDQQDFRRKLAWKAFQHVASYDSAVSEWLWKQINGGGKFPPSLTVPLTLKSSLRYGE 238 (547)
T ss_pred CCeEEECCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhhcccccccCCCCC
Confidence 99999999999999999999888997 99999999999999999999999998653211148999999999999999999
Q ss_pred CcccccccccccchhhhccCCccchhhccCCCCCcchhhhHHHHHHHhHhcCCCeEEEeecCCcccccccCCHHHHHHHH
Q 009955 292 NPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLA 371 (521)
Q Consensus 292 NPHQ~Aa~Y~~~~~~~~~~~~~~~~~ql~GKeLSYNN~lD~daA~~~v~ef~~pa~vivKH~NPCGvA~~~~~~eAy~~A 371 (521)
||||+|+||.++.......+++..++||||||||||||+|+|+||+||+||++|+||||||+||||||+++|+.|||++|
T Consensus 239 NPHQ~Aa~Y~~~~~~~~~~~~~~~~~ql~GKelSyNN~lD~daA~~~v~ef~~pa~vivKH~nPCGvA~~~~~~eAy~~A 318 (547)
T PLN02891 239 NPHQKAAFYVDKSLSEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFSNPTCVVVKHTNPCGVASRGDILEAYRLA 318 (547)
T ss_pred CcccCcceeecCcccccccccchhhHHhcCCCCCcchhhchHHHHHHHHhcCcCeeeeecccCccceeecCCHHHHHHHH
Confidence 99999999975421000124689999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcCCCEEEeccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhcCCCceEEEecCCCCCCceE
Q 009955 372 VKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKNKKGKLSL 451 (521)
Q Consensus 372 ~~~DpvSAFGGIvA~Nr~vD~~~A~~i~~~~~~~d~~~~~F~EvIiAP~f~~eAleiL~~K~KNlRlL~~~~~~~~~~~~ 451 (521)
|+|||+|||||||||||+||.++|++|.+.|+|+|||++.|+||||||+|++||||||++|+||||||+++......+++
T Consensus 319 ~~~Dp~SaFGGIvA~Nr~vd~~~A~~i~~~~~~~d~~~~~F~EvviAP~f~~eAleiL~~K~knlRvL~~~~~~~~~~~~ 398 (547)
T PLN02891 319 VRADPVSAFGGIVAFNCEVDEDLAREIREFRSPTDGETRMFYEIVVAPKYTEKGLEVLKGKSKTLRILEAKPRKKGRLSL 398 (547)
T ss_pred HhcCCccccCCEEEEcCccCHHHHHHHHhhccccccccceeEEEEEcCCCCHHHHHHHHhcCCCEEEEEecCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999776799999995323346899
Q ss_pred EEEceeEEEecCCCCCCCcCCceeecCCCCCHhHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCC
Q 009955 452 RQVGGGWLAQDSDDLTPEDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKVGTSILMKSDMFG 521 (521)
Q Consensus 452 R~v~GG~LvQ~~D~~~~~~~~~~vVT~r~Pt~~e~~dL~FAwkvvK~VKSNAIV~ak~~~tvGIGaGQ~~ 521 (521)
|+|.||+|+|++|...+++.+|+|||+++||++||+||+|||+||||||||||||+||++|||||+||||
T Consensus 399 r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~Pt~~e~~DL~FAwkvvK~vKSNAIV~akd~~tvGIGaGQ~s 468 (547)
T PLN02891 399 RQVGGGWLAQDSDDLTPEDITFTVVSEKVPTESELEDAKFAWLCVKHVKSNAIVVAKNNRMLGMGSGQPN 468 (547)
T ss_pred EEEeeEEEEECCCCCCCCHHHCeecCCCCcCHHHHHHHHHHHHHHhhccCceEEEEeCCeEEEecCCCcc
Confidence 9999999999999988777889999999999999999999999999999999999999999999999997
No 2
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=100.00 E-value=3.1e-177 Score=1392.63 Aligned_cols=428 Identities=51% Similarity=0.794 Sum_probs=409.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
+||||||+||+++++||+.|.++||+|+||+||+++|+++||+|+.|+++||||||||||||||||+||||||+||++++
T Consensus 1 kraLISVsDK~~iv~lAk~L~~lGfeIiATgGTak~L~e~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~~ 80 (511)
T TIGR00355 1 RRALLSVSDKTGIVEFAQGLVERGVELLSTGGTAKLLAEAGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDDD 80 (511)
T ss_pred CEEEEEEeCcccHHHHHHHHHHCCCEEEEechHHHHHHHCCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCchH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhc-C
Q 009955 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG-N 234 (521)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el~~-g 234 (521)
+++|++|||++|||||||||||++||+++ +++++|+|||||||||||||||||||++|+|||||+||+.++++|+. |
T Consensus 81 -~~~l~~~~I~~IDlVvvNLYPF~~tv~~~-~~~~~e~IEnIDIGGptmlRaAAKN~~~V~Vv~dp~dY~~vl~el~~~g 158 (511)
T TIGR00355 81 -DADLEEHGIEPIDLVVVNLYPFKETVAKP-GVTLAEAVENIDIGGPTMLRAAAKNHADVTILVDPKDYSAILSELDEQG 158 (511)
T ss_pred -HHHHHHcCCCceeEEEEeccChHHHhccC-CCCHHHHHHhccCCcHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987 99999999999999999999999999999999999999999999986 9
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCceeeccccccccccCCCcccccccccccchhhhccCCcc
Q 009955 235 QDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGGIA 314 (521)
Q Consensus 235 ~~s~~~R~~LA~KAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~~~ 314 (521)
++|+++|++||.|||+|||+||++|++||+++.++ .||+.+++.|++.|+|||||||||+|+||.++. ...+++.
T Consensus 159 ~~s~~~R~~lA~kAF~~Ta~YD~~Ia~yl~~~~~~--~~p~~~~~~~~k~~~LRYGENPHQ~Aa~Y~~~~---~~~~~~~ 233 (511)
T TIGR00355 159 SISLALRFDLAIKAFEHTAAYDAAIANYFGKLVGE--KEPRQFNLNFTKKQTLRYGENPHQKAAFYVTQN---VKEGSVA 233 (511)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccchhhhhcceeccccCCCCCcccceeeecccC---cCCcccc
Confidence 99999999999999999999999999999865432 389999999999999999999999999997541 0124688
Q ss_pred chhhccCCCCCcchhhhHHHHHHHhHhcCCCeEEEeecCCcccccccCCHHHHHHHHHhcCCCCcCCCEEEeccccCHHH
Q 009955 315 TAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEAL 394 (521)
Q Consensus 315 ~~~ql~GKeLSYNN~lD~daA~~~v~ef~~pa~vivKH~NPCGvA~~~~~~eAy~~A~~~DpvSAFGGIvA~Nr~vD~~~ 394 (521)
.++||||||||||||+|+|+||+||+||++|+||||||+||||+|+++|+.|||++||+|||+|||||||||||+||+++
T Consensus 234 ~~~qL~GKelSyNNilD~daA~~~v~ef~~pa~vivKH~nPCGvA~~~~l~~Ay~~A~~~Dp~SaFGGiva~N~~vd~~~ 313 (511)
T TIGR00355 234 TAEQLQGKELSYNNIADADAALEIVKEFDEPAAVIVKHANPCGVALGKTILDAYDRAFGADPTSAFGGIIALNRELDVPT 313 (511)
T ss_pred ceeeecCCCCCccchhchHHHHHHHHhcCCCcEEEEecCCcceeecCCCHHHHHHHHHhcCCccccCCEEEECCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhcCCCceEEEecC-CC-CCCceEEEEceeEEEecCCCCCCCcCC
Q 009955 395 AKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKK-NK-KGKLSLRQVGGGWLAQDSDDLTPEDIQ 472 (521)
Q Consensus 395 A~~i~~~~~~~d~~~~~F~EvIiAP~f~~eAleiL~~K~KNlRlL~~~~-~~-~~~~~~R~v~GG~LvQ~~D~~~~~~~~ 472 (521)
|++|.++ |+||||||+|++|||+||++| ||||||++.. .. ...+++|+|.||+|+|++|...++..+
T Consensus 314 A~~i~~~----------F~EvviAP~f~~eAl~iL~~K-KnlRll~~~~~~~~~~~~~~r~v~GG~LvQ~~d~~~~~~~~ 382 (511)
T TIGR00355 314 AKAIVRQ----------FLEVIIAPGYSAEALEILAKK-KNLRVLILGIWANRVPELDFKRVNGGLLVQDRDDGMVDQST 382 (511)
T ss_pred HHHHHhh----------eEEEEEcCCCCHHHHHHHhhC-CCEEEEEecCCCCCCCCceEEEEeeEEEEECCCCCCCChhh
Confidence 9999999 999999999999999999999 9999999942 11 346899999999999999998887889
Q ss_pred ceeecCCCCCHhHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCC
Q 009955 473 FKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKVGTSILMKSDMFG 521 (521)
Q Consensus 473 ~~vVT~r~Pt~~e~~dL~FAwkvvK~VKSNAIV~ak~~~tvGIGaGQ~~ 521 (521)
|+|||+++||++||+||+||||||||||||||||+||++|||||+||||
T Consensus 383 ~~vVt~~~pt~~e~~dL~FAwkv~k~vKSNAIv~akd~~tvGiGaGQ~s 431 (511)
T TIGR00355 383 LKVVTKRQPTEQELIDLLFAWKVAKHVKSNAIVYAKNNMTVGVGAGQMS 431 (511)
T ss_pred ceeeCCCCCCHHHHHHHHHHHHHHhhccCceEEEEeCCeEEEecCCCcc
Confidence 9999999999999999999999999999999999999999999999997
No 3
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.5e-175 Score=1360.75 Aligned_cols=430 Identities=54% Similarity=0.857 Sum_probs=414.3
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCC
Q 009955 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (521)
Q Consensus 74 ~i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~ 153 (521)
+|+|+|||||||+|+++||+.|.++||+|+|||||+++|+++||+|++||++||||||||||||||||+||||||+||++
T Consensus 1 ~ikrALiSVsdKtGive~ak~L~~~gvei~STGGTak~l~eaGi~V~~Vs~~TgfpE~ldGRVKTLHP~ihgGiL~~r~~ 80 (515)
T COG0138 1 MIKRALLSVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDITGFPEMLDGRVKTLHPKIHGGILARRDK 80 (515)
T ss_pred CcchhheeeccccChHHHHHHHHhCCEEEEecCCHHHHHHhCCCCCCchhhccCChhHhCCcceeeccccccceeecccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhc
Q 009955 154 KHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG 233 (521)
Q Consensus 154 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el~~ 233 (521)
++|+++|++|+|.+|||||||||||++|++++ +++++|+|||||||||||+|||||||++|+|||||+||+.++++|+.
T Consensus 81 ~~h~~~l~e~~I~~iDlVvvNLYPF~~tv~~~-~~~~~e~vEnIDIGGptmlRaAAKN~~~V~V~~dp~Dy~~vl~~l~~ 159 (515)
T COG0138 81 DEHMAALEEHGIEPIDLVVVNLYPFEETVAKP-GVTLEEAVENIDIGGPTMLRAAAKNHKDVTVVVDPADYAAVLEELKA 159 (515)
T ss_pred HHHHHHHHHcCCCCccEEEEcCCChhhhccCC-CCCHHHHHhccccCchHHhHHhhhccCCeeEEecchhhHHHHHHHhc
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999999996
Q ss_pred -CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCceeeccccccccccCCCcccccccccccchhhhccCC
Q 009955 234 -NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGG 312 (521)
Q Consensus 234 -g~~s~~~R~~LA~KAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~ 312 (521)
|++|+++|++||.|||+|||+||++|++||.+.++. .||+.+.+.+.+.++|||||||||+|+||.+... .++
T Consensus 160 ~~~~~~~~R~~lA~kaF~hTA~YDaaI~~~~~~~~~~--~fp~~~~~~~~~~~~lRYGENPHQ~aa~Y~~~~~----~~~ 233 (515)
T COG0138 160 NGELSLATRKRLAAKAFEHTAAYDAAIANYFSELLGG--EFPEQLNLSFTKKQDLRYGENPHQSAAFYRDGNA----KGG 233 (515)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccc--ccchheecccccceeeecCCCCCCCCeEEecCCC----CCc
Confidence 699999999999999999999999999999986543 4999999999999999999999999999976521 247
Q ss_pred ccchhhccCCCCCcchhhhHHHHHHHhHhcCC--CeEEEeecCCcccccccCCHHHHHHHHHhcCCCCcCCCEEEecccc
Q 009955 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKN--PTCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEV 390 (521)
Q Consensus 313 ~~~~~ql~GKeLSYNN~lD~daA~~~v~ef~~--pa~vivKH~NPCGvA~~~~~~eAy~~A~~~DpvSAFGGIvA~Nr~v 390 (521)
++.++|||||+||||||+|+|+||+||+||++ |+||||||+||||||+++++.+||++||+|||+||||||||+||+|
T Consensus 234 va~a~qL~GK~lSYNNi~DaDaA~~~v~ef~~~~pa~~ivKH~NPcGvA~~~~i~~Ay~~A~~~D~~SaFGGIIA~Nr~v 313 (515)
T COG0138 234 VATAKQLQGKELSYNNIADADAAWELVKEFDEPGPACAIVKHANPCGVAVGDTIAEAYKRAYEADPTSAFGGIIALNREV 313 (515)
T ss_pred hhhHHHhcCCcccccchhhHHHHHHHHHhcCCcCceEEEEecCCCchhccChhHHHHHHHHHcCCCccccCCEEEEcCcc
Confidence 99999999999999999999999999999997 5999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhcCCCceEEEecCC-C-CCCceEEEEceeEEEecCCCCCC
Q 009955 391 DEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKN-K-KGKLSLRQVGGGWLAQDSDDLTP 468 (521)
Q Consensus 391 D~~~A~~i~~~~~~~d~~~~~F~EvIiAP~f~~eAleiL~~K~KNlRlL~~~~~-~-~~~~~~R~v~GG~LvQ~~D~~~~ 468 (521)
|.+||+.|.++ |+||||||+|++|||+||++| ||||||+++.+ . ...+++|+|.||+|+|++|...+
T Consensus 314 D~etA~~i~~~----------F~EvIIAP~~~~~Al~il~kK-~NlRvL~~~~~~~~~~~~~~k~v~GGlLvQ~~d~~~~ 382 (515)
T COG0138 314 DVETAEAISKI----------FLEVIIAPSYTEEALEILAKK-KNLRVLTIGPLGPRAAGLEFKRVSGGLLVQERDDGMI 382 (515)
T ss_pred CHHHHHHHHhh----------hEEEEEcCCCCHHHHHHHhhc-CceEEEecCCCCCCCcceeEEEEeeeEEEEccccccc
Confidence 99999999999 999999999999999999988 99999999863 2 24699999999999999999888
Q ss_pred CcCCceeecCCCCCHhHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCC
Q 009955 469 EDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKVGTSILMKSDMFG 521 (521)
Q Consensus 469 ~~~~~~vVT~r~Pt~~e~~dL~FAwkvvK~VKSNAIV~ak~~~tvGIGaGQ~~ 521 (521)
+..+|+|||+|+||++||+||+||||||||||||||||+||++|||||+||||
T Consensus 383 ~~~~~~vVTkr~pt~~e~~dl~Fawkv~k~vKSNaIv~akd~~TvGiGaGQ~s 435 (515)
T COG0138 383 DEAELKVVTKRQPTEQELEDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMS 435 (515)
T ss_pred CccceeEecCCCCCHHHHHHHHHHHHHHhHhccceEEEEcCCeEEEecCCccc
Confidence 88999999999999999999999999999999999999999999999999997
No 4
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=100.00 E-value=5.2e-172 Score=1357.21 Aligned_cols=430 Identities=55% Similarity=0.846 Sum_probs=412.3
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCC
Q 009955 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (521)
Q Consensus 74 ~i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~ 153 (521)
+|++|||||+||+++++||+.|.++||+|+||+||+++|+++||+|+.|+++||||||||||||||||+||||||+||++
T Consensus 3 ~~~~aLISVsDK~~iv~lAk~L~~lGfeI~AT~GTak~L~e~GI~v~~V~k~TgfpEil~GRVKTLHP~IhgGiLa~r~~ 82 (513)
T PRK00881 3 MIKRALISVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDGRVKTLHPKIHGGILARRDN 82 (513)
T ss_pred CcCEEEEEEeCcccHHHHHHHHHHCCCEEEEcchHHHHHHHCCCeeEEeecccCCchhcCCccccCCchhhhhhccCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhc
Q 009955 154 KHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG 233 (521)
Q Consensus 154 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el~~ 233 (521)
++|+++|++|||++|||||||||||++|++++ +++++|+|||||||||||||||||||++|+|||||+||+.++++|+.
T Consensus 83 ~~h~~~l~~~~i~~IDlVvvNLYPF~~tv~~~-~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~Vv~dp~dY~~v~~~l~~ 161 (513)
T PRK00881 83 PEHVAALEEHGIEPIDLVVVNLYPFEETVAKP-GVTLEEAIENIDIGGPTMVRAAAKNHKDVAVVVDPADYDAVLEELKA 161 (513)
T ss_pred HHHHHHHHHcCCCceeEEEEeCcChHHHhccC-CCCHHHHHhcccCCcHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999986 89999999999999999999999999999999999999999999997
Q ss_pred -CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCceeeccccccccccCCCcccccccccccchhhhccCC
Q 009955 234 -NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGG 312 (521)
Q Consensus 234 -g~~s~~~R~~LA~KAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~ 312 (521)
|++|+++|++||.|||+|||.||++|++||+++.++ .||+.+++.|++.|+|||||||||+|+||..+. ..++
T Consensus 162 ~g~~s~~~R~~lA~kAF~~ta~YD~~I~~yl~~~~~~--~~p~~~~~~~~~~~~LRYGENPHQ~aa~Y~~~~----~~~~ 235 (513)
T PRK00881 162 NGSTTLETRFRLAAKAFAHTAAYDAAIANYLTEQVGE--EFPETLNLSFEKKQDLRYGENPHQKAAFYRDPN----AEGG 235 (513)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCchhhhcchhhcccccCCCCCCcCceeeeccC----Cccc
Confidence 899999999999999999999999999999865432 489999999999999999999999999997542 1246
Q ss_pred ccchhhccCCCCCcchhhhHHHHHHHhHhcCCCeEEEeecCCcccccccCCHHHHHHHHHhcCCCCcCCCEEEeccccCH
Q 009955 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDE 392 (521)
Q Consensus 313 ~~~~~ql~GKeLSYNN~lD~daA~~~v~ef~~pa~vivKH~NPCGvA~~~~~~eAy~~A~~~DpvSAFGGIvA~Nr~vD~ 392 (521)
+..++||||||||||||+|+|+||+||+||++|+||||||+||||+|+++|+.+||++||+|||+|||||||||||+||+
T Consensus 236 ~~~~~ql~GK~lSyNN~lD~d~A~~~v~ef~~pa~vivKH~nPCGvA~~~~~~~Ay~~A~~~Dp~SaFGgiva~N~~vd~ 315 (513)
T PRK00881 236 VATAEQLQGKELSYNNIADADAALELVKEFDEPACVIVKHANPCGVAVGDTILEAYDKAYACDPVSAFGGIIAFNREVDA 315 (513)
T ss_pred ccccceecCCccCCcchhchHHHHHHHHhcCCCeEEEEecCCcceeecCCCHHHHHHHHHhcCCccccCCEEEECCccCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhcCCCceEEEecCCCCCCceEEEEceeEEEecCCCCCCCcCC
Q 009955 393 ALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKNKKGKLSLRQVGGGWLAQDSDDLTPEDIQ 472 (521)
Q Consensus 393 ~~A~~i~~~~~~~d~~~~~F~EvIiAP~f~~eAleiL~~K~KNlRlL~~~~~~~~~~~~R~v~GG~LvQ~~D~~~~~~~~ 472 (521)
++|++|.++ |+||||||+|++||||||++| ||||||++.......+++|+|.||+|+|++|...+++.+
T Consensus 316 ~~A~~i~~~----------f~EviiAP~~~~eAl~iL~~K-knlR~l~~~~~~~~~~~~r~v~Gg~LvQ~~d~~~~~~~~ 384 (513)
T PRK00881 316 ETAEAIHKI----------FLEVIIAPSFSEEALEILAKK-KNLRLLECPFPGGWEGDFKSVSGGLLVQDRDLGMVDPAD 384 (513)
T ss_pred HHHHHHHhh----------eEEEEEcCCCCHHHHHHHhhC-CCeEEEEecCCCCCCeeEEEEeeeEEEECCCCCCcCccc
Confidence 999999999 999999999999999999999 999999995322336799999999999999988887889
Q ss_pred ceeecCCCCCHhHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCC
Q 009955 473 FKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKVGTSILMKSDMFG 521 (521)
Q Consensus 473 ~~vVT~r~Pt~~e~~dL~FAwkvvK~VKSNAIV~ak~~~tvGIGaGQ~~ 521 (521)
|++||+++||++||+||+|||++||||||||||++||++||||||||||
T Consensus 385 ~~vvT~~~pt~~e~~Dl~faw~v~K~vkSNaIVvvkd~~~vgIgaGQ~s 433 (513)
T PRK00881 385 LKVVTKRQPTEQELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMS 433 (513)
T ss_pred ceeecCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEeCCeEEEECCCCcc
Confidence 9999999999999999999999999999999999999999999999997
No 5
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.2e-129 Score=997.85 Aligned_cols=415 Identities=45% Similarity=0.651 Sum_probs=382.5
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCC
Q 009955 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (521)
Q Consensus 74 ~i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~ 153 (521)
.-+.||||||||+||++||+.|.++|+.|+||||||+.|+++|++|++|+++|+||||||||||||||.||||||+| |.
T Consensus 3 ~~k~AllSVsDKtgLl~La~gL~~~g~~lvaSGGTAk~lrdaG~~V~dVs~iT~fPEMLgGRVKTLHPaVHgGILAR-di 81 (588)
T KOG2555|consen 3 GTKLALLSVSDKTGLLDLAKGLVELGVTLVASGGTAKMLRDAGLPVRDVSEITHFPEMLGGRVKTLHPAVHGGILAR-DI 81 (588)
T ss_pred CceEEEEEeecccChHHHHhHHHhcCcEEEecCchHHHHHhCCCccchHHhhcCChHHhCCcccccccccccceeec-cC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999997 89
Q ss_pred HHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhc
Q 009955 154 KHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG 233 (521)
Q Consensus 154 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el~~ 233 (521)
++|+++|++|+|+.||+||||||||.+||+++ |++++|+|||||||||||||||||||++|+|||||.||+.++++|+.
T Consensus 82 esd~kdL~e~~i~~vdvVVcNLYPF~etVa~p-gvtveeaVEnIDIGGvTLLRAAAKNH~rVtiv~dp~DY~~vlsel~~ 160 (588)
T KOG2555|consen 82 ESDEKDLKEQGIDKVDVVVCNLYPFKETVAKP-GVTVEEAVENIDIGGVTLLRAAAKNHARVTIVCDPADYDAVLSELKS 160 (588)
T ss_pred chhHHHHHHcCCCeEEEEEEeccchHhhhcCC-CCcHHHHhhhcccccHHHHHHHHhcCCcEEEEechhHHHHHHHHHhc
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCceeeccccccccccCCCccccc-ccccccchhhhccCC
Q 009955 234 NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKA-AFYVDKSLAEVNAGG 312 (521)
Q Consensus 234 g~~s~~~R~~LA~KAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~A-a~Y~~~~~~~~~~~~ 312 (521)
++++...|.+.|.|||+|||+||++|++||++|..+ ...+..||||+||||+. .+|... +
T Consensus 161 ~~~~~d~~~r~aLKaf~Hta~yD~Aisd~frKQy~~-----------gvsq~slRYg~npHQ~paql~~~q--------~ 221 (588)
T KOG2555|consen 161 SEISQDLRNRRALKAFEHTASYDAAISDYFRKQYSE-----------GVSQLSLRYGMNPHQKPAQLYVVQ--------G 221 (588)
T ss_pred cccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh-----------hhhhcchhcCCCcccChhhHhhhc--------C
Confidence 777777777777799999999999999999997532 23456799999999987 678532 3
Q ss_pred ccchhhccCCCCCcchhhhHHHHHHHhHhcCC----CeEEEeecCCccccccc-------------CCHHH------HHH
Q 009955 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKN----PTCVIVKHTNPCGVASR-------------DDILE------AYK 369 (521)
Q Consensus 313 ~~~~~ql~GKeLSYNN~lD~daA~~~v~ef~~----pa~vivKH~NPCGvA~~-------------~~~~e------Ay~ 369 (521)
-.++..|+| +++|||++|++.+|.||+||.+ |+|+++||.||||+|+| +|+.| ||.
T Consensus 222 ~lp~~vl~g-spgyiNl~DAln~w~lvkel~~~l~~paaasfKHvsPaGaAvg~pls~~e~kv~~v~Di~eltpla~AYa 300 (588)
T KOG2555|consen 222 KLPFKVLCG-SPGYINLLDALNSWPLVKELSENLGLPAAASFKHVSPAGAAVGLPLSDVEAKVYFVDDIYELTPLACAYA 300 (588)
T ss_pred CCceEEecC-CCchhhHHhhhcchhhhhHHHhhcCCcccceecccCcccccccCccchhhhheeehhhhhhcchHHHHHH
Confidence 456788999 6799999999999999999987 99999999999999996 57777 999
Q ss_pred HHHhcCCCCcCCCEEEeccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhcCCC--ceEEEecCCC-C
Q 009955 370 LAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKN--LRILETKKNK-K 446 (521)
Q Consensus 370 ~A~~~DpvSAFGGIvA~Nr~vD~~~A~~i~~~~~~~d~~~~~F~EvIiAP~f~~eAleiL~~K~KN--lRlL~~~~~~-~ 446 (521)
+|.-+|++|+||++||+|..||..||+.|+ |+++|| ||||+|++||||||+|| || .+||++++.+ +
T Consensus 301 rArgADrmSsFGdfvAls~~vDv~tAriIs--revsDG--------viApgYepeaLeiL~Kk-K~g~yciLq~dpny~p 369 (588)
T KOG2555|consen 301 RARGADRMSSFGDFVALSDVVDVVTARIIS--REVSDG--------VIAPGYEPEALEILSKK-KNGKYCILQMDPNYVP 369 (588)
T ss_pred HHhcCCccccccCeEEeeeehhhhhHhHhh--ccccCc--------eecCCCCHHHHHHHhcc-cCCceEEEEeCCCcCc
Confidence 999999999999999999999999999999 667887 99999999999999777 65 8999998775 4
Q ss_pred CCceEEEEceeEEEecCCCCCCCcCCc-eeecCCCC-CHhHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCC
Q 009955 447 GKLSLRQVGGGWLAQDSDDLTPEDIQF-KVVSEKKP-QESELHDAEFAWLCVKHVKSNAIVIAKVGTSILMKSDMFG 521 (521)
Q Consensus 447 ~~~~~R~v~GG~LvQ~~D~~~~~~~~~-~vVT~r~P-t~~e~~dL~FAwkvvK~VKSNAIV~ak~~~tvGIGaGQ~~ 521 (521)
...+.|+|+|++|.|++|...++...| +|||++++ ++..+.||.|||.++||++||+|||||||++|||||||+|
T Consensus 370 ~~~e~rqv~G~~L~Qkrnda~i~~s~F~~vvsknk~l~e~a~~Dl~vAt~a~KytqSNsvcyAkng~vvGlGaGQqs 446 (588)
T KOG2555|consen 370 GEVERRQVFGLTLQQKRNDAVIDQSLFSNVVSKNKDLPESALIDLIVATIALKYTQSNSVCYAKNGMVVGLGAGQQS 446 (588)
T ss_pred ccceeeeeeeEEeeeecCcCcchhHHHHHHhhcCCCcchHHHHHHHHHHHhhhhhccccEEEEeCCEEEeecCCCcc
Confidence 578999999999999999998887777 68888765 4556899999999999999999999999999999999986
No 6
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=100.00 E-value=5.3e-122 Score=930.88 Aligned_cols=299 Identities=53% Similarity=0.822 Sum_probs=266.8
Q ss_pred HHHCCCCEEEEeCCCCHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCceeeccccccc
Q 009955 208 AAKNHKDVLVVVGSEDYPALLEFLKG-NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSS 286 (521)
Q Consensus 208 AAKN~~~V~Vv~dP~DY~~vl~el~~-g~~s~~~R~~LA~KAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~ 286 (521)
|||||++|+|||||+||+.++++|+. |++|+++|++||.|||+|||+||++|++||+++.+. +.||+.++++|++.++
T Consensus 1 AAKN~~~V~Vv~dP~dY~~vl~el~~~G~~s~~~R~~LA~kAF~~Ta~YD~aIa~yl~~~~~~-~~~p~~~~~~~~~~~~ 79 (315)
T PF01808_consen 1 AAKNYKDVTVVVDPADYDEVLEELKSNGEISLETRRRLAAKAFAHTAAYDAAIANYLSEQFGA-EEFPETLTLSLKKVQD 79 (315)
T ss_dssp HHHTTTT-EEE-SGGGHHHHHHHHHTTTSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTS-SEEEEEEEEEEE
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccchhhhchhhhHhhc
Confidence 89999999999999999999999997 999999999999999999999999999999987652 2599999999999999
Q ss_pred cccCCCcccccccccccchhhhccCCccchhhccCCCCCcchhhhHHHHHHHhHhcC-CCeEEEeecCCcccccccCCHH
Q 009955 287 LRYGENPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFK-NPTCVIVKHTNPCGVASRDDIL 365 (521)
Q Consensus 287 LRYGENPHQ~Aa~Y~~~~~~~~~~~~~~~~~ql~GKeLSYNN~lD~daA~~~v~ef~-~pa~vivKH~NPCGvA~~~~~~ 365 (521)
|||||||||+|+||..+.. ...++..++||||||||||||+|+|+||++|+||+ +|+||||||+||||||+++|+.
T Consensus 80 LRYGENPHQ~Aa~Y~~~~~---~~~~~~~~~qL~GKeLSyNN~lD~daA~~lv~ef~~~pa~vivKH~nPCGvA~~~~~~ 156 (315)
T PF01808_consen 80 LRYGENPHQKAAFYREPSE---EEGGLAPAEQLQGKELSYNNLLDADAAWRLVREFDDEPACVIVKHNNPCGVAIGDTLL 156 (315)
T ss_dssp ESSSSSTTS-EEEEECTTS---SSE-GHSEEEEESS---HHHHHHHHHHHHHHHCCCHSCEEEEEETTEEEEEEEESHHH
T ss_pred cccCCCCCchhhheecCCc---ccccccchHHhcCcCcccCCchhHHHHHHHHHHcCCCCeEEEEecCccceeEecCCHH
Confidence 9999999999999986521 12368999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCEEEeccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhcCCCceEEEecCCC
Q 009955 366 EAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKNK 445 (521)
Q Consensus 366 eAy~~A~~~DpvSAFGGIvA~Nr~vD~~~A~~i~~~~~~~d~~~~~F~EvIiAP~f~~eAleiL~~K~KNlRlL~~~~~~ 445 (521)
|||++||+|||+|||||||||||+||++||++|.++ |+||||||+|++|||+||++| ||||||+++...
T Consensus 157 eAy~~A~~~Dp~SaFGGIva~N~~vD~~~A~~i~~~----------F~EviiAP~f~~eAleiL~~K-KnlRll~~~~~~ 225 (315)
T PF01808_consen 157 EAYEKAFACDPVSAFGGIVAFNRPVDEETAEEISEI----------FLEVIIAPDFTPEALEILKKK-KNLRLLKLPDPP 225 (315)
T ss_dssp HHHHHHHHSTTTTTTTEEEEESSEB-HHHHHHHCTS-----------EEEEEESEB-HHHHHHHHCT-CCGEEEEEEEST
T ss_pred HHHHHHHHhCcccccCCEEEEcCccCHHHHHHHHhc----------eEEEEEeCCCCHHHHHHHHhc-CCeEEEEecccc
Confidence 999999999999999999999999999999999999 999999999999999999999 999999997542
Q ss_pred C--CCceEEEEceeEEEecCCCCCCCcCCceeecCCCCCHhHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCC
Q 009955 446 K--GKLSLRQVGGGWLAQDSDDLTPEDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKVGTSILMKSDMFG 521 (521)
Q Consensus 446 ~--~~~~~R~v~GG~LvQ~~D~~~~~~~~~~vVT~r~Pt~~e~~dL~FAwkvvK~VKSNAIV~ak~~~tvGIGaGQ~~ 521 (521)
. +.+++|+|.||+|+|++|....++.+|+|||+++||++||+||+|||+||||||||||||+||++|||||+||||
T Consensus 226 ~~~~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~Pt~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGIGaGQ~s 303 (315)
T PF01808_consen 226 NSKPELEFRSVDGGLLVQDRDNALIDPDDWKVVTKRQPTEEELEDLLFAWKVVKHVKSNAIVLAKDGQTVGIGAGQMS 303 (315)
T ss_dssp TC--SEEEEEETTEEEEEE--SGGCSGGGGEEESSS---HHHHHHHHHHHHHHHCSSSSEEEEEETTEEEEEEESSSS
T ss_pred cCCCCeEEEEEeccEEEEcCCCCCCCHHHCeEecCCCCCHHHHHHHHHHHHHHhhcccceEEEEeCCeEEEeCCCCcc
Confidence 2 379999999999999999988888999999999999999999999999999999999999999999999999997
No 7
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=100.00 E-value=1.6e-121 Score=925.17 Aligned_cols=297 Identities=54% Similarity=0.811 Sum_probs=280.5
Q ss_pred HHHCCCCEEEEeCCCCHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccCCCCCceeeccccccc
Q 009955 208 AAKNHKDVLVVVGSEDYPALLEFLKG-NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSS 286 (521)
Q Consensus 208 AAKN~~~V~Vv~dP~DY~~vl~el~~-g~~s~~~R~~LA~KAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~ 286 (521)
|||||++|+|||||+||+.++++|+. |++|+++|++||.|||+|||.||++|++||+++.++ .||+.+++.|++.|+
T Consensus 1 AAKN~~~V~Vv~dP~dY~~vl~el~~~g~~s~~~R~~LA~kAF~~Ta~YD~aIa~yl~~~~~~--~~p~~~~~~~~k~~~ 78 (311)
T smart00798 1 AAKNHKDVTVVVDPADYAEVLEELKAGGGLSLETRKRLAAKAFAHTAAYDAAISNYLAKQLAS--EFPETLTLSFEKKQD 78 (311)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCchhhhhcceecCc
Confidence 79999999999999999999999997 999999999999999999999999999999865332 499999999999999
Q ss_pred cccCCCcccccccccccchhhhccCCccchhhccCCCCCcchhhhHHHHHHHhHhcCCCeEEEeecCCcccccccCCHHH
Q 009955 287 LRYGENPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILE 366 (521)
Q Consensus 287 LRYGENPHQ~Aa~Y~~~~~~~~~~~~~~~~~ql~GKeLSYNN~lD~daA~~~v~ef~~pa~vivKH~NPCGvA~~~~~~e 366 (521)
|||||||||+|+||.++. ..+++.+++||||||||||||+|+|+||+||+||++|+||||||+||||+|+++|+.|
T Consensus 79 LRYGENPHQ~Aa~Y~~~~----~~~~~~~~~qL~GKeLSyNN~lD~daA~~lv~ef~~pa~vivKH~nPCGvA~~~~~~~ 154 (311)
T smart00798 79 LRYGENPHQKAAFYTDPD----ALGGIATAKQLQGKELSYNNILDADAALELVKEFDEPACVIVKHANPCGVAVGDTLAE 154 (311)
T ss_pred cCCCCCcCcceeEEeccC----cccccccchhhcCcccCCcchhchHHHHHHHHhcCCCcEEEEecCCcceeecCCCHHH
Confidence 999999999999997542 1235789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcCCCEEEeccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhcCCCceEEEecCCC-
Q 009955 367 AYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKNK- 445 (521)
Q Consensus 367 Ay~~A~~~DpvSAFGGIvA~Nr~vD~~~A~~i~~~~~~~d~~~~~F~EvIiAP~f~~eAleiL~~K~KNlRlL~~~~~~- 445 (521)
||++||+|||+|||||||||||+||++||++|.++ |+||||||+|++||||||++| ||||||+++...
T Consensus 155 Ay~kA~~~Dp~SaFGGIva~Nr~vd~~~A~~i~~~----------F~EviiAP~f~~eAleiL~~K-KnlRll~~~~~~~ 223 (311)
T smart00798 155 AYRKAYAADPVSAFGGIIAFNRPVDEETAEAINKI----------FLEVIIAPDFDEEALEILSKK-KNLRLLELGPLPD 223 (311)
T ss_pred HHHHHHhcCCccccCCEEEECCccCHHHHHHHHhh----------eEEEEEcCCCCHHHHHHHhhC-CCEEEEEeCCCCC
Confidence 99999999999999999999999999999999999 999999999999999999999 999999995332
Q ss_pred CCCceEEEEceeEEEecCCCCCCCcCCceeecCCCCCHhHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCC
Q 009955 446 KGKLSLRQVGGGWLAQDSDDLTPEDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKVGTSILMKSDMFG 521 (521)
Q Consensus 446 ~~~~~~R~v~GG~LvQ~~D~~~~~~~~~~vVT~r~Pt~~e~~dL~FAwkvvK~VKSNAIV~ak~~~tvGIGaGQ~~ 521 (521)
...+++|+|.||+|+|++|...+++.+|++||+++||++||+||+||||||||||||||||+||++|||||+||||
T Consensus 224 ~~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vvt~~~pt~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGiGaGQ~s 299 (311)
T smart00798 224 PDGLEFKSVSGGLLVQDRDNGGIDPEDLKVVTKRQPTEEELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMS 299 (311)
T ss_pred CCceEEEEEeeEEEEECCCCCCCCHHHCEecCCCCCCHHHHHHhHHHHHHHhhcccceEEEEeCCeEEEecCCCcc
Confidence 3468999999999999999987777889999999999999999999999999999999999999999999999997
No 8
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=100.00 E-value=1.3e-84 Score=617.62 Aligned_cols=186 Identities=58% Similarity=0.889 Sum_probs=183.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
+||||||+||++++++|+.|.++||+|+||+||+++|+++||+|+.|+++||||||||||||||||+||||||+||++++
T Consensus 1 ~~vLISVsDK~~l~~lAk~L~~lGf~I~AT~GTAk~L~e~GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~~~~ 80 (187)
T cd01421 1 KRALISVSDKTGLVEFAKELVELGVEILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNEE 80 (187)
T ss_pred CEEEEEEeCcccHHHHHHHHHHCCCEEEEccHHHHHHHHcCCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCCChh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhc-C
Q 009955 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG-N 234 (521)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el~~-g 234 (521)
|+ +|++|||++|||||||||||++|++++ +++++++|||||||||||||||||||++|+|||||+||+.++++|+. |
T Consensus 81 ~~-~~~~~~i~~idlVvvNlYpF~~~~~~~-~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~vv~dp~dY~~v~~~l~~~g 158 (187)
T cd01421 81 HK-DLEEHGIEPIDLVVVNLYPFEETVAKG-NVTLEEAIENIDIGGPSLLRAAAKNYKDVTVLVDPADYQKVLEELKSNG 158 (187)
T ss_pred HH-HHHHcCCCCeeEEEEcccChHHHhccC-CCCHHHHHHhccCCcHHHHHHHHhcCCCeEEEcCHHHHHHHHHHHHhcC
Confidence 99 999999999999999999999999986 89999999999999999999999999999999999999999999986 9
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 009955 235 QDDQQFRRKLAWKAFQHVASYDSAVSEWL 263 (521)
Q Consensus 235 ~~s~~~R~~LA~KAF~~TA~YD~aIa~yl 263 (521)
++|+++|++||.|||+|||+||++|++||
T Consensus 159 ~~~~~~R~~lA~kAF~~ta~YD~~I~~~~ 187 (187)
T cd01421 159 SISEETRRRLALKAFAHTAEYDAAISNYL 187 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999997
No 9
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=100.00 E-value=3.3e-84 Score=665.10 Aligned_cols=218 Identities=30% Similarity=0.434 Sum_probs=205.6
Q ss_pred ccccccCCCccc-ccccccccchhhhccCCccchhhccCCCCCcchhhhHHHHHHHhHhcC----CCeEEEeecCCcccc
Q 009955 284 KSSLRYGENPHQ-KAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFK----NPTCVIVKHTNPCGV 358 (521)
Q Consensus 284 ~~~LRYGENPHQ-~Aa~Y~~~~~~~~~~~~~~~~~ql~GKeLSYNN~lD~daA~~~v~ef~----~pa~vivKH~NPCGv 358 (521)
+++||||||||| +|+||... ++.+++||||| ||||||+|+|+||+||+||+ +|+||||||+||||+
T Consensus 3 ~~~LRYGeNPHQk~Aa~y~~~--------~~~~~~~L~Gk-lSynNilDad~A~~lv~ef~~~~~~paavivKH~nPCG~ 73 (390)
T PRK07106 3 ELELKYGCNPNQKPARIFMKE--------GELPIEVLNGR-PGYINFLDALNSWQLVKELKEATGLPAAASFKHVSPAGA 73 (390)
T ss_pred CCCccCCCCcCcccceeeecC--------CccCceEecCc-CCcchHHHHHHHHHHHHHhhhccCCCcEEeeeccCccee
Confidence 578999999999 69999642 57899999999 99999999999999999998 699999999999999
Q ss_pred cccCC------------------HHHHHHHHHhcCCCCcCCCEEEeccccCHHHHHHHhcccCCCCCccccEEEEEEcCC
Q 009955 359 ASRDD------------------ILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPS 420 (521)
Q Consensus 359 A~~~~------------------~~eAy~~A~~~DpvSAFGGIvA~Nr~vD~~~A~~i~~~~~~~d~~~~~F~EvIiAP~ 420 (521)
|++++ +.+||++||+|||+|+||||||+|++||++||++|++. |+||||||+
T Consensus 74 A~~~~l~~~~~~~~~~~~~~~~~~~~Ay~rA~~~Dp~SaFGgivA~N~~vD~~tA~~i~~~----------f~EvIIAP~ 143 (390)
T PRK07106 74 AVGLPLSDTLKKIYFVDDMELSPLACAYARARGADRMSSYGDFAALSDVCDVETAKLLKRE----------VSDGIIAPG 143 (390)
T ss_pred eecCCcchhhhheeecccccccHHHHHHHHHHhcCCccccCCEEEECCccCHHHHHHHHhh----------EEEEEEcCC
Confidence 99998 99999999999999999999999999999999999999 999999999
Q ss_pred CCHHHHHHHhhcCC--CceEEEecCCC-CCCceEEEEceeEEEecCCCCCCCcCCc-eeecC-CCCCHhHHHHHHHHHHH
Q 009955 421 YTEEGLEILRGKSK--NLRILETKKNK-KGKLSLRQVGGGWLAQDSDDLTPEDIQF-KVVSE-KKPQESELHDAEFAWLC 495 (521)
Q Consensus 421 f~~eAleiL~~K~K--NlRlL~~~~~~-~~~~~~R~v~GG~LvQ~~D~~~~~~~~~-~vVT~-r~Pt~~e~~dL~FAwkv 495 (521)
|++||||||++| | |+|||+++... +..+++|+|.||+|+|++|...++.++| ++||+ ++||++|++||+|||+|
T Consensus 144 f~~eALeiL~~K-Kn~nlriL~~~~~~~~~~~e~r~v~Gg~L~Q~~d~~~~~~~~~~~vVT~~~~pt~~e~~DL~fAw~v 222 (390)
T PRK07106 144 YTPEALEILKAK-KKGNYNIIKIDPNYEPAPIETKDVFGITFEQGRNELKIDEDLLKNIVTENKELPDEAKRDLIIALIT 222 (390)
T ss_pred CCHHHHHHHHhC-cCCceEEEEcCCCCCCCceEEEEEeeEEEEECCCCCCCCHHHhhcccCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999 8 69999995332 3568999999999999999988877889 99998 99999999999999999
Q ss_pred HhhhcceEEEEEeCCeEEEecCCCCC
Q 009955 496 VKHVKSNAIVIAKVGTSILMKSDMFG 521 (521)
Q Consensus 496 vK~VKSNAIV~ak~~~tvGIGaGQ~~ 521 (521)
|||||||||||+|||+|||||+||||
T Consensus 223 vK~vkSNaIv~akdg~tvGIGaGQ~S 248 (390)
T PRK07106 223 LKYTQSNSVCYAKDGQAIGIGAGQQS 248 (390)
T ss_pred HHhcccceEEEEeCCeEEEeCCCCcc
Confidence 99999999999999999999999997
No 10
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=99.69 E-value=1.4e-17 Score=141.44 Aligned_cols=95 Identities=33% Similarity=0.451 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHHHHcCCC
Q 009955 87 DLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIG 166 (521)
Q Consensus 87 glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~~~~I~ 166 (521)
+++++|+.|.++||+|+||+||+++|+++||+|..|.+.+++||.++||+ ++++.++++
T Consensus 1 e~~~~a~~l~~lG~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~------------------~i~~~i~~~--- 59 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIYATEGTAKFLKEHGIEVTEVVNKIGEGESPDGRV------------------QIMDLIKNG--- 59 (95)
T ss_dssp THHHHHHHHHHTTSEEEEEHHHHHHHHHTT--EEECCEEHSTG-GGTHCH------------------HHHHHHHTT---
T ss_pred CHHHHHHHHHHCCCEEEEChHHHHHHHHcCCCceeeeeecccCccCCchh------------------HHHHHHHcC---
Confidence 58999999999999999999999999999999999999999999999999 555555554
Q ss_pred ceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHH
Q 009955 167 TFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPA 203 (521)
Q Consensus 167 ~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGps 203 (521)
.|||||+++|||....... +..+..+..++||+++|
T Consensus 60 ~IdlVIn~~~~~~~~~~~d-g~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 60 KIDLVINTPYPFSDQEHTD-GYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp SEEEEEEE--THHHHHTHH-HHHHHHHHHHTTSHEEC
T ss_pred CeEEEEEeCCCCcccccCC-cHHHHHHHHHcCCCCcC
Confidence 7899999999999988621 56677777888887754
No 11
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=99.52 E-value=1.8e-14 Score=121.09 Aligned_cols=90 Identities=46% Similarity=0.712 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHHHHcCCC
Q 009955 87 DLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIG 166 (521)
Q Consensus 87 glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~~~~I~ 166 (521)
+++++++.|.++||+|+||+||+++|+++||+| ||+|++|++|+. ..++....+
T Consensus 1 ~~~~~~~~l~~lG~~i~AT~gTa~~L~~~Gi~~-----------------~~~~~ki~~~~~---------~i~~~i~~g 54 (90)
T smart00851 1 GLVELAKRLAELGFELVATGGTAKFLREAGLPV-----------------KTLHPKVHGGIL---------AILDLIKNG 54 (90)
T ss_pred CHHHHHHHHHHCCCEEEEccHHHHHHHHCCCcc-----------------eeccCCCCCCCH---------HHHHHhcCC
Confidence 478999999999999999999999999999975 889999999863 246677789
Q ss_pred ceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHH
Q 009955 167 TFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPA 203 (521)
Q Consensus 167 ~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGps 203 (521)
.||+||++.|||.+...+. +..+..+..++||+++|
T Consensus 55 ~id~VIn~~~~~~~~~~~d-~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 55 EIDLVINTLYPLGAQPHED-GKALRRAAENIDIPGAT 90 (90)
T ss_pred CeEEEEECCCcCcceeccC-cHHHHHHHHHcCCCeeC
Confidence 9999999999987655442 55566666666766653
No 12
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=99.50 E-value=5.7e-14 Score=122.91 Aligned_cols=107 Identities=29% Similarity=0.398 Sum_probs=89.0
Q ss_pred EEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 78 ALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 78 aLISVs--DK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
+|||++ ||+.++++|+.|.++||+|+||+||+++|+++||+|+.|.++.+ + -||.|+..|..+
T Consensus 2 i~isv~d~~K~~~~~~a~~l~~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~-----~-----g~~~i~~~i~~~----- 66 (112)
T cd00532 2 VFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHE-----D-----GEPTVDAAIAEK----- 66 (112)
T ss_pred EEEEEEcccHHHHHHHHHHHHHCCCEEEECcHHHHHHHHcCCceEEEEecCC-----C-----CCcHHHHHHhCC-----
Confidence 799999 79999999999999999999999999999999999999999753 2 357777666543
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHH
Q 009955 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYP 225 (521)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~ 225 (521)
+.|||||...+|... .+.+..|..|.|+|.+| +|.++|+++-+.
T Consensus 67 ----------g~idlVIn~~~~~~~--------------~~~~~dg~~iRR~A~~~--~Ip~~T~~~ta~ 110 (112)
T cd00532 67 ----------GKFDVVINLRDPRRD--------------RCTDEDGTALLRLARLY--KIPVTTPNATAM 110 (112)
T ss_pred ----------CCEEEEEEcCCCCcc--------------cccCCChHHHHHHHHHc--CCCEEECHHHHh
Confidence 669999988766542 12456799999999998 999999876543
No 13
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=99.08 E-value=4.8e-10 Score=98.22 Aligned_cols=53 Identities=36% Similarity=0.424 Sum_probs=49.8
Q ss_pred cEEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCC
Q 009955 76 KQALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCF 128 (521)
Q Consensus 76 ~raLISVs--DK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGf 128 (521)
+.+|+|+. ||+.++++++.|.++||+|+||+||+++|+++|++|+.|++++++
T Consensus 1 ~~vlisv~~~dk~~~~~~a~~l~~~G~~i~aT~gTa~~L~~~gi~~~~v~~~~~~ 55 (116)
T cd01423 1 KGILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEE 55 (116)
T ss_pred CcEEEecCcccchhHHHHHHHHHHCCCEEEEccHHHHHHHHcCCCceEeeeccCC
Confidence 35899999 699999999999999999999999999999999999999998876
No 14
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=98.91 E-value=1.6e-09 Score=93.94 Aligned_cols=51 Identities=35% Similarity=0.596 Sum_probs=47.7
Q ss_pred cEEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccC
Q 009955 76 KQALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLT 126 (521)
Q Consensus 76 ~raLISVs--DK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiT 126 (521)
+.+|+|++ ||..++++++.|.++||+|+||+||+++|+++||+|+.|.++.
T Consensus 1 g~vl~s~~~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~ 53 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVS 53 (110)
T ss_pred CeEEEEEEcCcHhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecC
Confidence 46899999 7889999999999999999999999999999999999998864
No 15
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=98.83 E-value=9.3e-09 Score=94.92 Aligned_cols=117 Identities=25% Similarity=0.302 Sum_probs=82.1
Q ss_pred CCcEEEEEec--CcccHHHHHHHHHHc--CcEEEEechhHHHHHHC-CCeeEEecccCCCCcCCCCccccccchhhcccc
Q 009955 74 ANKQALISLS--DKKDLASLGIGLQEL--GYTIVSTGGTATSLENA-GVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGIL 148 (521)
Q Consensus 74 ~i~raLISVs--DK~glvelAk~L~~l--GfeIiATgGTak~L~e~-GI~v~~VskiTGfPEildGRVKTLHPkIhgGIL 148 (521)
..+++||||+ ||..++++++.|.++ ||+|+||+||+++|+++ ||+|+.| +.| -.+|+ |.|
T Consensus 3 ~~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~~~~Gi~v~~v--i~~---~~gg~-----~~i----- 67 (142)
T PRK05234 3 ARKRIALIAHDHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQEATGLDVTRL--LSG---PLGGD-----QQI----- 67 (142)
T ss_pred cCcEEEEEEeccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHHhccCCeeEEE--EcC---CCCCc-----hhH-----
Confidence 4568999999 699999999999999 99999999999999999 9999888 322 22443 222
Q ss_pred cCCCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHH
Q 009955 149 ARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALL 228 (521)
Q Consensus 149 arr~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl 228 (521)
.++-.. +.||+||.---|... . . -.-.|-.|-|+|.+ .+|-++|+.+-=..++
T Consensus 68 ---------~~~I~~--g~i~lVInt~dp~~~---~--~---------~~~D~~~IRR~Av~--~~IP~~T~l~tA~a~~ 120 (142)
T PRK05234 68 ---------GALIAE--GKIDMLIFFRDPLTA---Q--P---------HDPDVKALLRLADV--WNIPVATNRATADFLI 120 (142)
T ss_pred ---------HHHHHc--CceeEEEEecCCCCC---C--c---------ccchHHHHHHHHHH--cCCCEEcCHHHHHHHH
Confidence 222222 478998654333311 0 0 01125667777777 3488899988777777
Q ss_pred HHHh
Q 009955 229 EFLK 232 (521)
Q Consensus 229 ~el~ 232 (521)
+.|.
T Consensus 121 ~al~ 124 (142)
T PRK05234 121 SSLL 124 (142)
T ss_pred HHHh
Confidence 7774
No 16
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.67 E-value=5.9e-08 Score=113.14 Aligned_cols=114 Identities=28% Similarity=0.407 Sum_probs=86.1
Q ss_pred CCcEEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCC
Q 009955 74 ANKQALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARR 151 (521)
Q Consensus 74 ~i~raLISVs--DK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr 151 (521)
..+++||||+ ||++++++|+.|.++||+|+||+||+++|+++||+|+.|+++.. | +|.|
T Consensus 936 ~~~~~lisv~~~dK~~l~~~a~~l~~~G~~i~aT~gT~~~l~~~gi~~~~v~~~~~------~-----~~~i-------- 996 (1066)
T PRK05294 936 TSGTVFLSVRDRDKEEVVELAKRLLELGFKILATSGTAKFLREAGIPVELVNKVHE------G-----RPHI-------- 996 (1066)
T ss_pred CCCeEEEEeccccHHHHHHHHHHHHHcCCEEEEccHHHHHHHHCCCeeEEEeeccC------c-----CccH--------
Confidence 3468999999 89999999999999999999999999999999999999998641 1 2222
Q ss_pred CCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Q 009955 152 DQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231 (521)
Q Consensus 152 ~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el 231 (521)
++.+++ +.||+||.... .. + -.-.|-.+=|+|..| .|-++|+.+--..+++.|
T Consensus 997 -----~~~i~~---~~idlvIn~~~--~~---~------------~~~~g~~iRr~Av~~--~ip~~T~~~~a~~~v~al 1049 (1066)
T PRK05294 997 -----VDLIKN---GEIDLVINTPT--GR---Q------------AIRDGFSIRRAALEY--KVPYITTLAGARAAVKAI 1049 (1066)
T ss_pred -----HHHHHc---CCeEEEEECCC--Cc---c------------cccccHHHHHHHHHc--CCCEEecHHHHHHHHHHH
Confidence 112222 46899876633 11 1 012377788888885 677789999888888888
Q ss_pred hc
Q 009955 232 KG 233 (521)
Q Consensus 232 ~~ 233 (521)
+.
T Consensus 1050 ~~ 1051 (1066)
T PRK05294 1050 EA 1051 (1066)
T ss_pred Hh
Confidence 53
No 17
>PLN02735 carbamoyl-phosphate synthase
Probab=98.58 E-value=1.3e-07 Score=110.99 Aligned_cols=53 Identities=45% Similarity=0.634 Sum_probs=49.6
Q ss_pred CCcEEEEEecC--cccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccC
Q 009955 74 ANKQALISLSD--KKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLT 126 (521)
Q Consensus 74 ~i~raLISVsD--K~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiT 126 (521)
..+++||||+| |++++++|+.|.++||+|+||+||+++|+++||+|+.|.++.
T Consensus 971 ~~g~vliSv~d~~K~~~~~~a~~L~~lG~~i~aT~GTa~~L~~~Gi~~~~v~~~~ 1025 (1102)
T PLN02735 971 LSGTVFISLNDLTKPHLVPIARGFLELGFRIVSTSGTAHFLELAGIPVERVLKLH 1025 (1102)
T ss_pred CCCeEEEEEecCCchhHHHHHHHHHHCCCEEEEccHHHHHHHHCCCceEEEeecc
Confidence 34689999996 999999999999999999999999999999999999999874
No 18
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=98.45 E-value=1.8e-07 Score=83.24 Aligned_cols=47 Identities=32% Similarity=0.448 Sum_probs=43.1
Q ss_pred EEEEec-CcccHHHHHHHHHHc--CcEEEEechhHHHHHH-CCCeeEEeccc
Q 009955 78 ALISLS-DKKDLASLGIGLQEL--GYTIVSTGGTATSLEN-AGVSVTKVEQL 125 (521)
Q Consensus 78 aLISVs-DK~glvelAk~L~~l--GfeIiATgGTak~L~e-~GI~v~~Vski 125 (521)
|||+=- ||..++++++.|.++ ||+|+||+||+++|++ +||+|+.| ++
T Consensus 3 ~l~a~d~dK~~~~~~a~~~~~ll~Gf~i~AT~gTa~~L~~~~Gi~v~~v-k~ 53 (115)
T cd01422 3 ALIAHDNKKEDLVEFVKQHQELLSRHRLVATGTTGLLIQEATGLTVNRM-KS 53 (115)
T ss_pred eEEecccchHHHHHHHHHHHHHhcCCEEEEechHHHHHHHhhCCcEEEE-ec
Confidence 566544 899999999999999 9999999999999999 99999999 75
No 19
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.29 E-value=7.2e-07 Score=104.38 Aligned_cols=113 Identities=23% Similarity=0.323 Sum_probs=79.6
Q ss_pred CCcEEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCC
Q 009955 74 ANKQALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARR 151 (521)
Q Consensus 74 ~i~raLISVs--DK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr 151 (521)
..+++||||+ ||..++++|+.|.++||+|+||.||+++|+++||+|+.|.++.. || |.|
T Consensus 936 ~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~at~gt~~~l~~~gi~~~~v~~~~~------~~-----~~~-------- 996 (1068)
T PRK12815 936 SYGTIFISVRDEDKPEVTKLARRFAQLGFKLLATEGTANWLAEEGITTGVVEKVQE------GS-----PSL-------- 996 (1068)
T ss_pred CCCeEEEEecccchHHHHHHHHHHHHCCCEEEEccHHHHHHHhCCCeEEEEeeccC------CC-----ccH--------
Confidence 3468999999 68999999999999999999999999999999999999998741 21 222
Q ss_pred CCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Q 009955 152 DQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231 (521)
Q Consensus 152 ~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el 231 (521)
-++-++ +.||+|+. . |-. + ... --|-.+=|+|..+ +|-++|+.+--..+++.|
T Consensus 997 ------~~~~~~--~~~~~vin-~-~~~----~--~~~---------~~~~~irr~a~~~--~ip~~t~~~~a~~~~~~~ 1049 (1068)
T PRK12815 997 ------LERIKQ--HRIVLVVN-T-SLS----D--SAS---------EDAIKIRDEALST--HIPVFTELETAQAFLQVL 1049 (1068)
T ss_pred ------HHHHHc--CCeEEEEE-C-CCC----c--ccc---------cccHHHHHHHHHc--CCCEEecHHHHHHHHHHH
Confidence 112222 44788865 2 211 1 100 1255566666664 567778887777777777
Q ss_pred h
Q 009955 232 K 232 (521)
Q Consensus 232 ~ 232 (521)
+
T Consensus 1050 ~ 1050 (1068)
T PRK12815 1050 E 1050 (1068)
T ss_pred H
Confidence 4
No 20
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.20 E-value=1.5e-06 Score=101.50 Aligned_cols=111 Identities=31% Similarity=0.459 Sum_probs=78.0
Q ss_pred CCcEEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCC
Q 009955 74 ANKQALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARR 151 (521)
Q Consensus 74 ~i~raLISVs--DK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr 151 (521)
+.+.+|+||+ ||..++++|+.|.++||+|+||.||+++|+++||+|+.|.++. +|| |.|
T Consensus 936 ~~~~~~~~~~~~~k~~~~~~~~~l~~~g~~~~at~gta~~l~~~gi~~~~~~~~~------~~~-----~~~-------- 996 (1050)
T TIGR01369 936 KKGSVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELVLKVS------EGR-----PNI-------- 996 (1050)
T ss_pred CCCeEEEEeccCchHHHHHHHHHHHHCCCEEEEechHHHHHHHCCCceEEEeecC------CCC-----ccH--------
Confidence 4477999998 6899999999999999999999999999999999999999874 122 222
Q ss_pred CCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHH
Q 009955 152 DQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLE 229 (521)
Q Consensus 152 ~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~ 229 (521)
++.+++ +.|||||.-... +-. -.-.|-.|=|+|.++ .|.++|+.+--..+++
T Consensus 997 -----~~~i~~---~~i~lvin~~~~---------~~~-------~~~~g~~iRr~Ai~~--~ip~~t~~~~a~~~~~ 1048 (1050)
T TIGR01369 997 -----LDLIKN---GEIELVINTTSK---------GAG-------TATDGYKIRREALDY--GVPLITTLNTAEAFAE 1048 (1050)
T ss_pred -----HHHHHc---CCeEEEEECCCC---------Ccc-------cccccHHHHHHHHHc--CCCEEecHHHHHHHHh
Confidence 122232 567988654211 111 123477777888774 5666777665444443
No 21
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=93.24 E-value=0.098 Score=49.35 Aligned_cols=135 Identities=22% Similarity=0.420 Sum_probs=77.4
Q ss_pred EEecCcccHHHHHHHH-HHcCcEEE-EechhHHHHHHC-CCeeEEecccCCCCcCCCC--ccccccchhhcccccCCCCH
Q 009955 80 ISLSDKKDLASLGIGL-QELGYTIV-STGGTATSLENA-GVSVTKVEQLTCFPEMLDG--RVKTLHPNIHGGILARRDQK 154 (521)
Q Consensus 80 ISVsDK~glvelAk~L-~~lGfeIi-ATgGTak~L~e~-GI~v~~VskiTGfPEildG--RVKTLHPkIhgGILarr~~~ 154 (521)
|-..+=+..++.|+.| ...|++++ |.|||+.+|+++ ++||..|. +|++ ++|.. +.|..+++| |+++-++.-
T Consensus 14 v~~~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~-~s~~-Dil~al~~a~~~~~~I--avv~~~~~~ 89 (176)
T PF06506_consen 14 VIEASLEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIP-ISGF-DILRALAKAKKYGPKI--AVVGYPNII 89 (176)
T ss_dssp EEE--HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE----HH-HHHHHHHHCCCCTSEE--EEEEESS-S
T ss_pred EEEecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEEC-CCHh-HHHHHHHHHHhcCCcE--EEEeccccc
Confidence 3334567788999998 88999865 669999999998 78888875 3555 55543 334555666 666666544
Q ss_pred HhHHHHHH-cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhc-----cc--cchHHHHHHHHHCCCCEEEEeCCCCHHH
Q 009955 155 HHMDALSE-HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIEN-----ID--IGGPAMIRAAAKNHKDVLVVVGSEDYPA 226 (521)
Q Consensus 155 ~h~~~l~~-~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEn-----ID--IGGpsmiRAAAKN~~~V~Vv~dP~DY~~ 226 (521)
..+..+++ +|+ ++.. |||... -+.+++|++ +| |||....+.|.|..-.. |+..+ .+++
T Consensus 90 ~~~~~~~~ll~~---~i~~---~~~~~~------~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~-v~i~s-g~es 155 (176)
T PF06506_consen 90 PGLESIEELLGV---DIKI---YPYDSE------EEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPG-VLIES-GEES 155 (176)
T ss_dssp CCHHHHHHHHT----EEEE---EEESSH------HHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEE-EESS---HHH
T ss_pred HHHHHHHHHhCC---ceEE---EEECCH------HHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcE-EEEEe-cHHH
Confidence 44555554 344 4443 444221 023333433 44 79999898887754443 44444 4677
Q ss_pred HHHHHh
Q 009955 227 LLEFLK 232 (521)
Q Consensus 227 vl~el~ 232 (521)
+...|.
T Consensus 156 i~~Al~ 161 (176)
T PF06506_consen 156 IRRALE 161 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 22
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=90.65 E-value=0.4 Score=47.91 Aligned_cols=44 Identities=30% Similarity=0.477 Sum_probs=37.3
Q ss_pred eeecCCCCCHhHHHHHHHHHHHHhhhcceEE---EEEeCCeEEEecC
Q 009955 474 KVVSEKKPQESELHDAEFAWLCVKHVKSNAI---VIAKVGTSILMKS 517 (521)
Q Consensus 474 ~vVT~r~Pt~~e~~dL~FAwkvvK~VKSNAI---V~ak~~~tvGIGa 517 (521)
-+.|+++||++|++|+.|||++++.+-.==| |++++++.|++-+
T Consensus 84 G~lt~~~p~~~~~~Di~~g~~ia~~lg~lDiGQ~vVV~~g~VlAVEa 130 (214)
T PF06230_consen 84 GVLTGRKPSKEELADIEFGFEIAKALGRLDIGQAVVVKDGRVLAVEA 130 (214)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEECCEEEEEec
Confidence 5778999999999999999999998865433 6788999988754
No 23
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=89.47 E-value=0.33 Score=57.29 Aligned_cols=40 Identities=35% Similarity=0.451 Sum_probs=37.7
Q ss_pred cEEEEEec-CcccHHHHHHHHHHcCcEEEEechhHHHHHHC
Q 009955 76 KQALISLS-DKKDLASLGIGLQELGYTIVSTGGTATSLENA 115 (521)
Q Consensus 76 ~raLISVs-DK~glvelAk~L~~lGfeIiATgGTak~L~e~ 115 (521)
+..|||.. +|..++..++.|.++||+|++|.||++++.++
T Consensus 1298 ~~i~i~ig~~k~ell~~~~~l~~~gy~lyat~~t~d~~~~~ 1338 (1435)
T KOG0370|consen 1298 KNILISIGSYKPELLPSARDLAKLGYKLYATNGTADFYLEN 1338 (1435)
T ss_pred CCeEEEeccchHHHHHHHHHHHhcCceeEEeccchhhhhcc
Confidence 56888887 89999999999999999999999999999997
No 24
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.66 E-value=7.5 Score=37.29 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=67.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
|++||+-....==..+|+.|.+.|++|+.++-+..-+++.. .++.. .++++.. +.++-.+++
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~------~~i~~----~~~~~~~--------~~~D~~~~~ 72 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA------ESLKG----QGLSAHA--------LAFDVTDHD 72 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH------HHHHh----cCceEEE--------EEccCCCHH
Confidence 68999988665567788999999999998876554443311 01100 1122221 112222334
Q ss_pred hHHHHH---HcCCCceeEEEEeccCcHHhhhcCCCCChh---hhhhccccchHHHHHHHHHC-----CCCEEEEeCCC
Q 009955 156 HMDALS---EHGIGTFDLVVVNLYPFYDKVTSAGGIDFE---DGIENIDIGGPAMIRAAAKN-----HKDVLVVVGSE 222 (521)
Q Consensus 156 h~~~l~---~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e---e~IEnIDIGGpsmiRAAAKN-----~~~V~Vv~dP~ 222 (521)
.++++- .....++|.||.|-..+...-.. ..+.+ +.++.-=.|=.-+++++.+. ..++..+++..
T Consensus 73 ~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~ 148 (255)
T PRK07523 73 AVRAAIDAFEAEIGPIDILVNNAGMQFRTPLE--DFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQ 148 (255)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCChh--hCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccch
Confidence 443332 22457899999998654211111 12222 22222223445677777753 45666666543
No 25
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=78.34 E-value=0.75 Score=41.35 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=37.6
Q ss_pred CCCeEEEeecCCcccccccCCHHHHHHHHHhcCC--CCcCCCEEEeccccCHHHHHHHh-cccCCC
Q 009955 343 KNPTCVIVKHTNPCGVASRDDILEAYKLAVKADP--VSAFGGIVAFNVEVDEALAKELR-EYRSPT 405 (521)
Q Consensus 343 ~~pa~vivKH~NPCGvA~~~~~~eAy~~A~~~Dp--vSAFGGIvA~Nr~vD~~~A~~i~-~~~~~~ 405 (521)
.++.++|+||.+-||+... ....|++-++..| +..+==.|-=+|+|.-+.|+.+. .+-||+
T Consensus 18 ~~~~~~iFKHSt~C~IS~~--a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAM--ALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp --SEEEEEEE-TT-HHHHH--HHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred ccCcEEEEEeCCCChhhHH--HHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 3577999999999999743 5566777777666 33222222337899999999886 666787
No 26
>PRK07102 short chain dehydrogenase; Provisional
Probab=67.94 E-value=40 Score=32.04 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=64.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
+++||.-...-=-..+++.|.+.|++++.+.-...-+++. ..++. ..-+++|..++ ++-.+++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~------~~~~~---~~~~~~~~~~~--------~Dl~~~~ 64 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL------ADDLR---ARGAVAVSTHE--------LDILDTA 64 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH------HHHHH---HhcCCeEEEEe--------cCCCChH
Confidence 4677777654444678899999999998886444333220 00000 01123444332 1222344
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhh--ccccchHH-HHHHHHH-----CCCCEEEEeCC
Q 009955 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE--NIDIGGPA-MIRAAAK-----NHKDVLVVVGS 221 (521)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IE--nIDIGGps-miRAAAK-----N~~~V~Vv~dP 221 (521)
+++++-+.-...+|+||.|-..+...-.. +.+.++..+ +++.-|+- +++++.+ +..++.++++.
T Consensus 65 ~~~~~~~~~~~~~d~vv~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 65 SHAAFLDSLPALPDIVLIAVGTLGDQAAC--EADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred HHHHHHHHHhhcCCEEEECCcCCCCcccc--cCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 44443332223469999886543221111 345565544 34555554 3444443 45667777765
No 27
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=67.69 E-value=8.1 Score=34.99 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=37.8
Q ss_pred cccchhhcccccCCCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCC
Q 009955 138 TLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNH 212 (521)
Q Consensus 138 TLHPkIhgGILarr~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~ 212 (521)
.++|.--...-.+.....-+.-++..|++ -++|+|||||..|-.+ ++..+-+-|+.=.-..|+.++|..
T Consensus 19 ~lNPS~A~~~~~D~T~~~~~~~a~~~gyg--~~~i~NLf~~~~t~p~----~l~~~~~~~~~~N~~~i~~~~~~~ 87 (136)
T PF07799_consen 19 GLNPSTADAEKDDPTIRRCINFARRWGYG--GVIIVNLFPQRSTDPK----DLKKAPDPIGPENDEHIREALKEA 87 (136)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHhhcCCC--eEEEEEecccccCCHH----HHHhccCcccHhHHHHHHHHHhcc
Confidence 34454443333333223334446777888 6789999999987432 222222334333445677777744
No 28
>PRK08264 short chain dehydrogenase; Validated
Probab=65.83 E-value=48 Score=31.27 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=66.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCc-EEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGY-TIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQK 154 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGf-eIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~ 154 (521)
+++||.-..--=-..+|+.|.+.|+ .++.+.-..+.+++ .+.+|+.+. ++-.++
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-----------------~~~~~~~~~--------~D~~~~ 61 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-----------------LGPRVVPLQ--------LDVTDP 61 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-----------------cCCceEEEE--------ecCCCH
Confidence 5678877655445678899999999 88888765555543 122333322 122334
Q ss_pred HhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccc--cchHHH-HHHHH-----HCCCCEEEEeCCCC
Q 009955 155 HHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENID--IGGPAM-IRAAA-----KNHKDVLVVVGSED 223 (521)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnID--IGGpsm-iRAAA-----KN~~~V~Vv~dP~D 223 (521)
+.++++.+. +.++|.||.|--.+...-.-. ..+.++..+.++ .-|+-. ++++. ++..+++.+++..-
T Consensus 62 ~~~~~~~~~-~~~id~vi~~ag~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~ 136 (238)
T PRK08264 62 ASVAAAAEA-ASDVTILVNNAGIFRTGSLLL-EGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLS 136 (238)
T ss_pred HHHHHHHHh-cCCCCEEEECCCcCCCCCccc-cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhh
Confidence 455554442 468999999875421110000 234555554444 456543 34432 24556666666543
No 29
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.71 E-value=44 Score=32.39 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=69.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
+++||.-....=-..+++.|.+.|++++.+..+...+++.- .++. -.++|+..+ .++-.+++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~------~~~~----~~~~~~~~~--------~~Dl~~~~ 72 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGL------AAYR----ELGIEAHGY--------VCDVTDED 72 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH------HHHH----hcCCceEEE--------EcCCCCHH
Confidence 56888877654456789999999999998877665554310 0110 012333322 22233444
Q ss_pred hHHHHHH---cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc--chH-HHHHHHHH-----CCCCEEEEeCC
Q 009955 156 HMDALSE---HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI--GGP-AMIRAAAK-----NHKDVLVVVGS 221 (521)
Q Consensus 156 h~~~l~~---~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI--GGp-smiRAAAK-----N~~~V~Vv~dP 221 (521)
.++++-+ ...++||.||.|--.+...-.. ..+.++.-+.+++ -|| .+++++.+ +..++..+++.
T Consensus 73 ~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~ 147 (265)
T PRK07097 73 GVQAMVSQIEKEVGVIDILVNNAGIIKRIPML--EMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSM 147 (265)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcc--cCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 4443322 2346899999998654321111 3455665555554 333 34444433 45667777664
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=62.43 E-value=8.7 Score=38.10 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=51.2
Q ss_pred cEEEEEecC-----cccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCcc---ccccchhhccc
Q 009955 76 KQALISLSD-----KKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRV---KTLHPNIHGGI 147 (521)
Q Consensus 76 ~raLISVsD-----K~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRV---KTLHPkIhgGI 147 (521)
+|+|+.|.. -+..+.+|+.|...-+.+++.+--.++|++. +++..+..+. + ..-+|++ +|++-..+-
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~Lrg~~v~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~-- 75 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARALRGHEVTFITSGPAPEFLKPR-FPVREIPGLG-P-IQENGRLDRWKTVRNNIRW-- 75 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHccCceEEEEcCCcHHHhccc-cCEEEccCce-E-eccCCccchHHHHHHHHHh--
Confidence 367777773 4556889999943333444444334777766 5766664431 1 1123333 444433311
Q ss_pred ccCCCCHHhHH-HHHHcCCCceeEEEEeccCc
Q 009955 148 LARRDQKHHMD-ALSEHGIGTFDLVVVNLYPF 178 (521)
Q Consensus 148 Larr~~~~h~~-~l~~~~I~~IDlVVVNLYPF 178 (521)
+. .....++ ..+...-..+|+||++.||+
T Consensus 76 ~~--~~~~~~~~~~~~l~~~~pDlVIsD~~~~ 105 (318)
T PF13528_consen 76 LA--RLARRIRREIRWLREFRPDLVISDFYPL 105 (318)
T ss_pred hH--HHHHHHHHHHHHHHhcCCCEEEEcChHH
Confidence 11 1111111 22334455699999999998
No 31
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=62.02 E-value=13 Score=36.57 Aligned_cols=111 Identities=26% Similarity=0.354 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCC-------CCccccccchh--hcccccCCCCHHhHH
Q 009955 88 LASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEML-------DGRVKTLHPNI--HGGILARRDQKHHMD 158 (521)
Q Consensus 88 lvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEil-------dGRVKTLHPkI--hgGILarr~~~~h~~ 158 (521)
=-.+++.|.++||+.+.-. ++.+++|. +||++|.. +.=.+-|+|.+ .++|+. .|..
T Consensus 13 KTT~~~~L~~lg~~~i~l~---el~~e~~~-------~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd-----~H~~ 77 (180)
T COG1936 13 KTTVCKLLRELGYKVIELN---ELAKENGL-------YTEYDELRKSVIVDVDKLRKRLEELLREGSGIVD-----SHLS 77 (180)
T ss_pred hHHHHHHHHHhCCceeeHH---HHHHhcCC-------eeccCCccceEEeeHHHHHHHHHHHhccCCeEee-----chhh
Confidence 3456777778888887754 78888888 78887743 23347788854 366664 4554
Q ss_pred HHHHcCCCceeEEEE-eccCcH--HhhhcCCCCChhhhhhccccchHHHHHHHHH-CCCCEEEE
Q 009955 159 ALSEHGIGTFDLVVV-NLYPFY--DKVTSAGGIDFEDGIENIDIGGPAMIRAAAK-NHKDVLVV 218 (521)
Q Consensus 159 ~l~~~~I~~IDlVVV-NLYPFe--~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAK-N~~~V~Vv 218 (521)
.| .+.+||||| -.+|+. +-.... |-+.+.+.||++-=-...+=.=|. -|..|..|
T Consensus 78 hl----~~~~dlVvVLR~~p~~L~~RLk~R-Gy~~eKI~ENveAEi~~vi~~EA~E~~~~v~ev 136 (180)
T COG1936 78 HL----LPDCDLVVVLRADPEVLYERLKGR-GYSEEKILENVEAEILDVILIEAVERFEAVIEV 136 (180)
T ss_pred hc----CCCCCEEEEEcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 33 235999887 566653 344454 899999999998655544443333 23445544
No 32
>PRK08862 short chain dehydrogenase; Provisional
Probab=61.70 E-value=18 Score=34.98 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=31.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+-...-==..+|+.|.+.|++++.++-+.+.|++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~ 44 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKD 44 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 568888776644567999999999999999877776655
No 33
>PRK06101 short chain dehydrogenase; Provisional
Probab=60.10 E-value=93 Score=29.73 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=27.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+...--==..+++.|.+.|++++.++-..+.+++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~ 40 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDE 40 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 456776664322257899999999999998766655554
No 34
>PRK09186 flagellin modification protein A; Provisional
Probab=59.13 E-value=54 Score=31.19 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=28.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
+++||+-...-==..+|+.|.+.|++++.+.-+...+
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~ 41 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEAL 41 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHH
Confidence 5788888765555678999999999999997655444
No 35
>PRK05693 short chain dehydrogenase; Provisional
Probab=56.41 E-value=1.7e+02 Score=28.52 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=27.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+....-==..+++.|.+.|++++.+.-...-++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~ 39 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVE 39 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56788776543335788999999999999876655443
No 36
>PRK12743 oxidoreductase; Provisional
Probab=56.07 E-value=32 Score=33.13 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=23.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEe
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVST 105 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiAT 105 (521)
+++||+-...-==..+++.|.+.|++++.+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~ 32 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGIT 32 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 578887775444467899999999999876
No 37
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=55.38 E-value=97 Score=33.85 Aligned_cols=161 Identities=24% Similarity=0.201 Sum_probs=89.7
Q ss_pred cEE-EEEecCcccHHHHHHHHHH------cCcEEEEech-----hHHHHHHCCCeeEEecccCC--CCcCCCCccccccc
Q 009955 76 KQA-LISLSDKKDLASLGIGLQE------LGYTIVSTGG-----TATSLENAGVSVTKVEQLTC--FPEMLDGRVKTLHP 141 (521)
Q Consensus 76 ~ra-LISVsDK~glvelAk~L~~------lGfeIiATgG-----Tak~L~e~GI~v~~VskiTG--fPEildGRVKTLHP 141 (521)
+++ .+-|.|-+.+.++++.|.. .+.-|++.+| ++..+.++|+.+-..++-|- .-++|-..+..-.|
T Consensus 267 ~~~Gv~~~~~~~el~~~~~~l~~~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NP 346 (447)
T TIGR02717 267 KQAGVIRADSIEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNP 346 (447)
T ss_pred HHCCeEEeCCHHHHHHHHHHHhcCCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCC
Confidence 444 6778889999999999874 3578999888 78888999997665543321 11223333333334
Q ss_pred hhhcccccCCCCHHhHH-HHHH-cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHC-CCCEEEE
Q 009955 142 NIHGGILARRDQKHHMD-ALSE-HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKN-HKDVLVV 218 (521)
Q Consensus 142 kIhgGILarr~~~~h~~-~l~~-~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN-~~~V~Vv 218 (521)
-=-+|. ..++.+. .++. ..-+.+|.|+|++.|-. .. +.+++. -.+++++.+. -+-| ++
T Consensus 347 lDl~~~----~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~--~~-----~~~~~a-------~~l~~~~~~~~~KPv-v~ 407 (447)
T TIGR02717 347 VDVLGD----ATPERYAKALKTVAEDENVDGVVVVLTPTA--MT-----DPEEVA-------KGIIEGAKKSNEKPV-VA 407 (447)
T ss_pred EecCCC----CCHHHHHHHHHHHHcCCCCCEEEEEccCCc--cC-----CHHHHH-------HHHHHHHHhcCCCcE-EE
Confidence 333333 2233332 2331 22356999999998642 11 112222 2344444443 4555 33
Q ss_pred eCC--CCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhH
Q 009955 219 VGS--EDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASY 255 (521)
Q Consensus 219 ~dP--~DY~~vl~el~~g~~s~~~R~~LA~KAF~~TA~Y 255 (521)
+-+ ..++...+.|++..+..=.--+-|.+||.+...|
T Consensus 408 ~~~gg~~~~~~~~~L~~~Gip~f~~p~~A~~al~~~~~~ 446 (447)
T TIGR02717 408 GFMGGKSVDPAKRILEENGIPNYTFPERAVKALSALYRY 446 (447)
T ss_pred EecCCccHHHHHHHHHhCCCCccCCHHHHHHHHHHHHhh
Confidence 433 4666676667652222211222388888887766
No 38
>PRK04017 hypothetical protein; Provisional
Probab=55.37 E-value=56 Score=30.72 Aligned_cols=66 Identities=26% Similarity=0.495 Sum_probs=45.1
Q ss_pred HhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHH-----HHH
Q 009955 155 HHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPA-----LLE 229 (521)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~-----vl~ 229 (521)
.|.+.|++.|+.. +++++|=+|+.+.. | ++ |-+++.|.++|||+.=-+ +.+
T Consensus 32 ~D~~~L~~lGv~~-~iI~t~g~~~~~~~------------e--------~i---a~~~r~VIILTD~D~~GekIr~~l~~ 87 (132)
T PRK04017 32 RDVESLRKLGVEG-EIIKVSRTPLAEIA------------E--------LI---ASRGKEVIILTDFDRKGEELAKKLSE 87 (132)
T ss_pred cHHHHHHHcCCCc-cEEEECCeecchHH------------H--------HH---HhcCCeEEEEECCCcchHHHHHHHHH
Confidence 4567799999975 77778777764322 2 22 348899999999986443 334
Q ss_pred HHhc--CCCCHHHHHHH
Q 009955 230 FLKG--NQDDQQFRRKL 244 (521)
Q Consensus 230 el~~--g~~s~~~R~~L 244 (521)
.|+. -.++.++|++|
T Consensus 88 ~l~~~G~~vd~~~R~~l 104 (132)
T PRK04017 88 YLQGYGIKVDTEIRREL 104 (132)
T ss_pred HHHhCCCCccHHHHHHH
Confidence 4543 36888888887
No 39
>PRK05867 short chain dehydrogenase; Provisional
Probab=54.65 E-value=43 Score=32.15 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=30.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+-...-==..+++.|.+.|++++.++-+.+.+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 48 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEK 48 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 578988887655678899999999999988766555544
No 40
>PRK08267 short chain dehydrogenase; Provisional
Probab=54.56 E-value=50 Score=31.72 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=28.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||.....-==..+++.|.+.|++++.+.-+...+++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 40 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAA 40 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 567777665433467889999999999998766665554
No 41
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=54.36 E-value=25 Score=35.66 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=30.4
Q ss_pred EEEEEecC-----cccHHHHHHHHHHcCcEE--EEechhHHHHHHCCCee
Q 009955 77 QALISLSD-----KKDLASLGIGLQELGYTI--VSTGGTATSLENAGVSV 119 (521)
Q Consensus 77 raLISVsD-----K~glvelAk~L~~lGfeI--iATgGTak~L~e~GI~v 119 (521)
|+|++++. -...+.+++.|.+ |+++ ++|+...+++++.|+++
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~ 49 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKV 49 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcc
Confidence 35666662 4567899999999 9665 56677677778888873
No 42
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=54.21 E-value=44 Score=31.57 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=27.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
+++||+-....==..+++.|.+.|++++.+.-+...+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~ 40 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAA 40 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHH
Confidence 4678877665555678999999999999886555443
No 43
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=53.73 E-value=30 Score=35.78 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=64.7
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH--------CCCeeEEecccCCCCcCCCCccccccchhhc
Q 009955 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN--------AGVSVTKVEQLTCFPEMLDGRVKTLHPNIHG 145 (521)
Q Consensus 74 ~i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e--------~GI~v~~VskiTGfPEildGRVKTLHPkIhg 145 (521)
+.+++||+....-==.++|+.|.+.|+.++=++-+.+.|.+ .|+.|..+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~---------------------- 62 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIP---------------------- 62 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEE----------------------
Confidence 45688998885544578999999999999999999987665 344443332
Q ss_pred ccccCCCCHHhHHHHHHcCCCceeEEEEec-----cCcHHhhhcCCCCChhhhhhccccchHHHH
Q 009955 146 GILARRDQKHHMDALSEHGIGTFDLVVVNL-----YPFYDKVTSAGGIDFEDGIENIDIGGPAMI 205 (521)
Q Consensus 146 GILarr~~~~h~~~l~~~~I~~IDlVVVNL-----YPFe~tv~~~~~~~~ee~IEnIDIGGpsmi 205 (521)
-=|++.+.-+.+.+--.....+||+.|.|- =||.+ .++++..|.|++==-+++
T Consensus 63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~-------~~~~~~~~mi~lN~~a~~ 120 (265)
T COG0300 63 ADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLE-------LSLDEEEEMIQLNILALT 120 (265)
T ss_pred CcCCChhHHHHHHHHHHhcCCcccEEEECCCcCCccchhh-------CChHHHHHHHHHHHHHHH
Confidence 123333333333322233445799999883 35654 356677776665444433
No 44
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=53.54 E-value=82 Score=35.44 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=83.1
Q ss_pred EEecCcccHHHHH-HHHHHcCcEE-EEechhHHHHHHC-CCeeEEecccCCCCcCCCC--ccccccchhhcccccCCCCH
Q 009955 80 ISLSDKKDLASLG-IGLQELGYTI-VSTGGTATSLENA-GVSVTKVEQLTCFPEMLDG--RVKTLHPNIHGGILARRDQK 154 (521)
Q Consensus 80 ISVsDK~glvelA-k~L~~lGfeI-iATgGTak~L~e~-GI~v~~VskiTGfPEildG--RVKTLHPkIhgGILarr~~~ 154 (521)
+-+.|=...++.| +.+...|+++ +|-||||++|+++ .|||.+|. ++|| ++|.- +.|..+.+| |+++-.+.-
T Consensus 34 v~~~~~~~~~~~a~~~~~~~~~dviIsrG~ta~~i~~~~~iPVv~i~-~s~~-Dil~al~~a~~~~~~i--a~vg~~~~~ 109 (526)
T TIGR02329 34 PIQLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSRLSLPVIVIK-PTGF-DVMQALARARRIASSI--GVVTHQDTP 109 (526)
T ss_pred EEeccHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHhCCCCEEEec-CChh-hHHHHHHHHHhcCCcE--EEEecCccc
Confidence 4445656666777 5577778875 5679999999995 78888875 5677 44432 334445555 666665555
Q ss_pred HhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhh-c--cccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Q 009955 155 HHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE-N--IDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231 (521)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IE-n--IDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el 231 (521)
..++.+.+. -.+|+.+.-..--++.-. .+.++.+ . +=|||....+.|.|.--+-..+++. +++.+.+
T Consensus 110 ~~~~~~~~l--l~~~i~~~~~~~~~e~~~-----~~~~l~~~G~~~viG~~~~~~~A~~~gl~~ili~s~---esi~~a~ 179 (526)
T TIGR02329 110 PALRRFQAA--FNLDIVQRSYVTEEDARS-----CVNDLRARGIGAVVGAGLITDLAEQAGLHGVFLYSA---DSVRQAF 179 (526)
T ss_pred HHHHHHHHH--hCCceEEEEecCHHHHHH-----HHHHHHHCCCCEEECChHHHHHHHHcCCceEEEecH---HHHHHHH
Confidence 555555532 233444443333332211 0111111 1 3379999999998877776666664 6666666
Q ss_pred h
Q 009955 232 K 232 (521)
Q Consensus 232 ~ 232 (521)
+
T Consensus 180 ~ 180 (526)
T TIGR02329 180 D 180 (526)
T ss_pred H
Confidence 4
No 45
>PRK06500 short chain dehydrogenase; Provisional
Probab=52.26 E-value=57 Score=30.83 Aligned_cols=38 Identities=26% Similarity=0.166 Sum_probs=29.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+....-=-..+++.|.+.|++++.++-....++
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~ 44 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLE 44 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHH
Confidence 57888888766667789999999999998865444333
No 46
>PRK07060 short chain dehydrogenase; Provisional
Probab=51.63 E-value=1.5e+02 Score=27.89 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=28.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||.....-==..+++.|.+.|++++.+.-+.+.++
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~ 47 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALD 47 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888776544456778999999999998876554443
No 47
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=51.36 E-value=60 Score=31.11 Aligned_cols=39 Identities=33% Similarity=0.220 Sum_probs=30.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||.-...-==..+|+.|.+.|++++.++-+...+++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~ 48 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL 48 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 568888776655578899999999999999876655544
No 48
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=50.97 E-value=49 Score=31.50 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=28.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
+++||+-...-==..+++.|.+.|++++.++-...-+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~ 44 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGA 44 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHH
Confidence 5789988866445578999999999999886655333
No 49
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=50.94 E-value=70 Score=30.02 Aligned_cols=124 Identities=23% Similarity=0.243 Sum_probs=69.0
Q ss_pred CcccHHHHHHHHHH------cCcEEEEe-chhHHHHHHCCCeeEEe-cccCCCCcCCCCccccccch--hhcccccCCCC
Q 009955 84 DKKDLASLGIGLQE------LGYTIVST-GGTATSLENAGVSVTKV-EQLTCFPEMLDGRVKTLHPN--IHGGILARRDQ 153 (521)
Q Consensus 84 DK~glvelAk~L~~------lGfeIiAT-gGTak~L~e~GI~v~~V-skiTGfPEildGRVKTLHPk--IhgGILarr~~ 153 (521)
.+.++.-|.+.+.+ .+..+++. ..|++.|++.|+++..+ ...+ .+|=.+.+... -..=||.-+..
T Consensus 57 S~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~g~~~~~~~~~~~-----~~~L~~~i~~~~~~~~~il~~~g~ 131 (239)
T cd06578 57 SPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLTADFVPEEGD-----SEGLLELLELQDGKGKRILRPRGG 131 (239)
T ss_pred CHHHHHHHHHHHHhhCCccccCCEEEEECHHHHHHHHHcCCCceeCCCccC-----HHHHHHHHHhcCCCCCEEEEEcCc
Confidence 45667777776653 57778777 68999999999998876 2222 22333333332 22223333322
Q ss_pred ---HHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHH
Q 009955 154 ---KHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEF 230 (521)
Q Consensus 154 ---~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~e 230 (521)
+.-.+.|+++|+..+.+++-..-|-..+ ....+.+++. ..++.++++|+--+.+++.
T Consensus 132 ~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~------~~~~~~l~~~--------------~~~~iiftS~~~v~~f~~~ 191 (239)
T cd06578 132 RAREDLAEALRERGAEVDEVEVYRTVPPDLD------AELLELLEEG--------------AIDAVLFTSPSTVRNLLEL 191 (239)
T ss_pred chhHHHHHHHHHCCCEEEEEEEEEEECCCCc------HHHHHHHHcC--------------CCcEEEEeCHHHHHHHHHH
Confidence 3444557778876444444322221100 0112222222 2238999999998888887
Q ss_pred Hh
Q 009955 231 LK 232 (521)
Q Consensus 231 l~ 232 (521)
+.
T Consensus 192 ~~ 193 (239)
T cd06578 192 LG 193 (239)
T ss_pred Hh
Confidence 75
No 50
>PRK07806 short chain dehydrogenase; Provisional
Probab=50.47 E-value=1.9e+02 Score=27.37 Aligned_cols=32 Identities=25% Similarity=0.089 Sum_probs=23.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgG 107 (521)
+++||.-...-==..+++.|.+.|++++.+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 57888876544345678999999999987654
No 51
>PRK05650 short chain dehydrogenase; Provisional
Probab=50.36 E-value=1.2e+02 Score=29.52 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=24.8
Q ss_pred EEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 77 QALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 77 raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
++||+...-.==..+++.|.+.|++++.+.-....++
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~ 38 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGE 38 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4666655433346788999999999988865444433
No 52
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=50.08 E-value=1.2e+02 Score=28.88 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=25.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechh
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGT 108 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGT 108 (521)
+++||.-..--=-..+++.|.+.|++++.+.-+
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 578887765544567889999999999988654
No 53
>PRK08303 short chain dehydrogenase; Provisional
Probab=50.01 E-value=1.5e+02 Score=30.14 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=25.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATg 106 (521)
+++||+-...-==..+|+.|.+.|+.++.++
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5788888876555788999999999998874
No 54
>PRK06181 short chain dehydrogenase; Provisional
Probab=49.49 E-value=90 Score=29.96 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=65.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
+++||.-...-=-..+++.|.+.|++++.+..+..-+++. ..++.+ .++++.+. -+=+ .+++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~------~~~l~~----~~~~~~~~-----~~Dl---~~~~ 63 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASL------AQELAD----HGGEALVV-----PTDV---SDAE 63 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH------HHHHHh----cCCcEEEE-----EccC---CCHH
Confidence 3566666544334678889999999999998775544321 001110 12222221 1112 1233
Q ss_pred hHHHHHH---cCCCceeEEEEeccCcHHhhhcCCCC-Chhhhhhccc---cchHHHHHHHH----HCCCCEEEEeCCCCH
Q 009955 156 HMDALSE---HGIGTFDLVVVNLYPFYDKVTSAGGI-DFEDGIENID---IGGPAMIRAAA----KNHKDVLVVVGSEDY 224 (521)
Q Consensus 156 h~~~l~~---~~I~~IDlVVVNLYPFe~tv~~~~~~-~~ee~IEnID---IGGpsmiRAAA----KN~~~V~Vv~dP~DY 224 (521)
.++++-+ ....++|.||.|--++...-.. .. +.++..+.++ +|---|++++. ++..++.++++..-|
T Consensus 64 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~--~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~ 141 (263)
T PRK06181 64 ACERLIEAAVARFGGIDILVNNAGITMWSRFD--ELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGL 141 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccccchh--ccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Confidence 3322211 1246899999997655432111 22 4444333333 34444556664 344567777776544
No 55
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=49.15 E-value=30 Score=33.02 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=70.1
Q ss_pred EEEEEec-CcccHHHHHHHHHH--cCcEEEEechhHHHHHH-CCCeeEEecccCCCCcCCCCccccccchhhcccccCCC
Q 009955 77 QALISLS-DKKDLASLGIGLQE--LGYTIVSTGGTATSLEN-AGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRD 152 (521)
Q Consensus 77 raLISVs-DK~glvelAk~L~~--lGfeIiATgGTak~L~e-~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~ 152 (521)
-|||.=- -|..+++|++.-.+ .+++|+|||-|.+.|++ -|++|+.... |. +||
T Consensus 5 IALIAHD~kK~~l~~f~~~~~~~L~~h~L~ATgTTG~~i~~~tgL~V~~~~S--Gp---lGG------------------ 61 (143)
T TIGR00160 5 IALIAHDKKKQDLVNFVQQHKPLLSQHDLYATGTTGNLISRATGLNINAMLS--GP---MGG------------------ 61 (143)
T ss_pred EEEEecccchHHHHHHHHHHHHHHcCCCEEECccHHHHHHHHHCCCeEEecc--CC---ccH------------------
Confidence 4565443 38999999988665 48999999999999987 4554443222 11 222
Q ss_pred CHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Q 009955 153 QKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231 (521)
Q Consensus 153 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el 231 (521)
+..+.++-.. +.||+||.=--|....=. +.+ | -+|+|.+.= -+|-+-|+++-=+-++..+
T Consensus 62 -DqQIga~Ia~--g~id~vIFf~DPl~~~ph---epD---------i--~aLlRlc~v--~nIP~AtN~aTA~~li~~~ 121 (143)
T TIGR00160 62 -DQQIGALIAE--GKIDAVIFFWDPLNAQPH---EPD---------V--KALLRLCTV--WNIPLATNVATADFLIKSP 121 (143)
T ss_pred -HHHHHHHHHh--CCCCEEEEecCCCCCCCC---CcC---------H--HHHHHHHHh--hCcccccCHHHHHHHHhCc
Confidence 2333333333 478999998888754221 222 1 368888754 4666777776655555544
No 56
>PRK06179 short chain dehydrogenase; Provisional
Probab=48.18 E-value=84 Score=30.40 Aligned_cols=119 Identities=15% Similarity=0.092 Sum_probs=63.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
+++||+-..--==..+++.|.+.|+++++++-+...+... .+|.. +-+ +-.+++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~------------------~~~~~-----~~~---D~~d~~ 58 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI------------------PGVEL-----LEL---DVTDDA 58 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc------------------CCCee-----EEe---ecCCHH
Confidence 4678877754334578899999999999886543322210 11211 112 222344
Q ss_pred hHHHHHH---cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc---chHHHHHHHH-----HCCCCEEEEeCCC
Q 009955 156 HMDALSE---HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI---GGPAMIRAAA-----KNHKDVLVVVGSE 222 (521)
Q Consensus 156 h~~~l~~---~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI---GGpsmiRAAA-----KN~~~V~Vv~dP~ 222 (521)
.++++-+ ...+++|+||.|--.+...-.. ..+.++.-+.+|+ |=..+++++. ++..+++.+++..
T Consensus 59 ~~~~~~~~~~~~~g~~d~li~~ag~~~~~~~~--~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~ 134 (270)
T PRK06179 59 SVQAAVDEVIARAGRIDVLVNNAGVGLAGAAE--ESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVL 134 (270)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCCcCcc--cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCcc
Confidence 4433222 1235799999998654321111 2344555444554 4445666642 3566777776643
No 57
>PRK07576 short chain dehydrogenase; Provisional
Probab=48.13 E-value=55 Score=31.92 Aligned_cols=38 Identities=5% Similarity=0.100 Sum_probs=27.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+-.-.-==..+++.|.+.|++++.+.-+..-++
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~ 47 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVD 47 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 47888876544445688999999999999876554443
No 58
>PRK07454 short chain dehydrogenase; Provisional
Probab=47.89 E-value=34 Score=32.42 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=30.1
Q ss_pred CCCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 73 QANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 73 ~~i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
.+++++||+-....==..+++.|.+.|++++.+.-+.+-++
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~ 44 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALE 44 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 34578999887544446788999999999999876554443
No 59
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=47.05 E-value=46 Score=31.28 Aligned_cols=90 Identities=22% Similarity=0.309 Sum_probs=58.1
Q ss_pred HHHHHHhHhcCCCeEEEeecCCcccccccCCHHHHHHHHHhcCCCCcCCCEEEeccccCHHHHHHHhcccCCCCCccccE
Q 009955 333 DAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMF 412 (521)
Q Consensus 333 daA~~~v~ef~~pa~vivKH~NPCGvA~~~~~~eAy~~A~~~DpvSAFGGIvA~Nr~vD~~~A~~i~~~~~~~d~~~~~F 412 (521)
+.+.+++.+ ...+||+.|..+ .=...+.-+..-|.. +..+|.+--|..|| -+.|.+.+|-.+... =
T Consensus 2 ~~~~~~L~e-~~~S~Vv~~~~~-i~t~~~rGv~pL~~l-l~~~~~~l~ga~va-DKvvGKAAA~lmv~g----------g 67 (134)
T PF08973_consen 2 EEAIKLLHE-ENYSCVVLKDGE-IRTSDGRGVKPLYDL-LNEEPEFLKGAVVA-DKVVGKAAAALMVLG----------G 67 (134)
T ss_dssp -HHHHHHHH-TT-SEEEESSSE-EEEE--STTHHHHHH-HHH-S---TT-EEE-EEEE-HHHHHHHHHH-----------
T ss_pred HHHHHHHHh-CCceEEEEeCCE-EEEeCCCChHHHHHH-HHhChhhhhcccHH-HHHHhHHHHHHHHHh----------c
Confidence 456677776 579999999988 666666777788877 88999887777765 567888888887644 2
Q ss_pred EEEEEcCCCCHHHHHHHhhcCCCceE
Q 009955 413 YEIVVAPSYTEEGLEILRGKSKNLRI 438 (521)
Q Consensus 413 ~EvIiAP~f~~eAleiL~~K~KNlRl 438 (521)
+.=|=|.=.|+.|+++|.+. ++++
T Consensus 68 v~~vyA~viS~~Al~~L~~~--gI~v 91 (134)
T PF08973_consen 68 VKEVYADVISEPALDLLEEA--GIKV 91 (134)
T ss_dssp -SEEEEEEEEHHHHHHHHHT--T--E
T ss_pred HHHHHHHHHhHHHHHHHHHc--CCce
Confidence 33355666699999999887 6654
No 60
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=46.93 E-value=50 Score=34.03 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHHHC-CCCEEEEeCCCCHHHHHHHHh---cCCCCHHHHHHH
Q 009955 206 RAAAKN-HKDVLVVVGSEDYPALLEFLK---GNQDDQQFRRKL 244 (521)
Q Consensus 206 RAAAKN-~~~V~Vv~dP~DY~~vl~el~---~g~~s~~~R~~L 244 (521)
+.++|+ ...|.+.++|++|...+...- .-.+|.|.|+|.
T Consensus 116 ~~~~~~~lp~~~~~~~~~~~~~~l~~~~~~~~~~~t~ed~~r~ 158 (320)
T TIGR01686 116 RANVKITLPVKTLLCDPAELAAILLFLNELLPLANTKEDRIRA 158 (320)
T ss_pred HHHHHHHCCCCccCCChHHHHHHhcccccccCccCCHHHHHHH
Confidence 444444 556899999999976654432 145677765553
No 61
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=46.91 E-value=78 Score=31.48 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=56.8
Q ss_pred CcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccC--CCCHHhHHHHHHcCCCceeEEEE---
Q 009955 99 GYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILAR--RDQKHHMDALSEHGIGTFDLVVV--- 173 (521)
Q Consensus 99 GfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILar--r~~~~h~~~l~~~~I~~IDlVVV--- 173 (521)
||+..=.--+...|+++|+.|+-++--.|.....++.-...-+.-+ +++-. |....+...+++.+...+|.|++
T Consensus 16 G~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG 94 (217)
T PRK11780 16 GSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETR-NVLVESARIARGEIKDLAEADAEDFDALIVPGG 94 (217)
T ss_pred CEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCcccccccccc-ceeeehhhhhccCCCchhHCChhhCCEEEECCC
Confidence 6655555566788888888888887533333332221100000001 21111 00011223466667778888875
Q ss_pred -----eccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCC
Q 009955 174 -----NLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSE 222 (521)
Q Consensus 174 -----NLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~ 222 (521)
||+.|...- |-+ -.|-.=-.++|....+-+-|+.||.--
T Consensus 95 ~g~~~~l~d~~~~~---------~~l-r~~~~v~~lv~~f~~~gK~vaAIChgp 138 (217)
T PRK11780 95 FGAAKNLSNFAVKG---------AEC-TVNPDVKALVRAFHQAGKPIGFICIAP 138 (217)
T ss_pred Cchhhhhhhhcccc---------hhc-ccCHHHHHHHHHHHHCCCEEEEECHHH
Confidence 122221000 000 012233467899999999999998754
No 62
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=46.76 E-value=30 Score=36.26 Aligned_cols=81 Identities=22% Similarity=0.070 Sum_probs=63.3
Q ss_pred ccchhhccCCCCCcchhhhHHHHHHHhHhcCCCeEEEeecCCcccccccC---CHHHHHHHHHhcCCCCcCCCEEEeccc
Q 009955 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRD---DILEAYKLAVKADPVSAFGGIVAFNVE 389 (521)
Q Consensus 313 ~~~~~ql~GKeLSYNN~lD~daA~~~v~ef~~pa~vivKH~NPCGvA~~~---~~~eAy~~A~~~DpvSAFGGIvA~Nr~ 389 (521)
...++.|-|++ +||+.|+-.|.+.+.+ ..|..|+|+|..+-|-..+. +...+....+.. |...|. +|..
T Consensus 144 ~fELe~Ltg~~--~~~~~da~~aa~~L~~-~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~~~----~~Gt 215 (281)
T COG2240 144 IFELEILTGKP--LNTLDDAVKAARKLGA-DGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLVPFI----PNGT 215 (281)
T ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhh-cCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcCCCC----CCCc
Confidence 45678999988 9999999888888887 67999999999996664432 445566666666 777777 8888
Q ss_pred cCHHHHHHHhcc
Q 009955 390 VDEALAKELREY 401 (521)
Q Consensus 390 vD~~~A~~i~~~ 401 (521)
=|.-+|..+.++
T Consensus 216 GDL~sallla~l 227 (281)
T COG2240 216 GDLFSALLLARL 227 (281)
T ss_pred hHHHHHHHHHHH
Confidence 888888887754
No 63
>PLN02384 ribose-5-phosphate isomerase
Probab=46.51 E-value=17 Score=37.65 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhcceEEEEEeCCeEEEecCCCC
Q 009955 488 DAEFAWLCVKHVKSNAIVIAKVGTSILMKSDMF 520 (521)
Q Consensus 488 dL~FAwkvvK~VKSNAIV~ak~~~tvGIGaGQ~ 520 (521)
-..-|+++++||+| |++||+|+|.|
T Consensus 36 K~~aA~~A~~~V~~--------gmvVGLGTGST 60 (264)
T PLN02384 36 KKIAAYKAVEFVES--------GMVLGLGTGST 60 (264)
T ss_pred HHHHHHHHHHhccC--------CCEEEecchHH
Confidence 34689999999875 78999999976
No 64
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=45.74 E-value=51 Score=33.33 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=52.7
Q ss_pred cccHHHHHHHHHHcCcEEEE-ec-------hhHHHHHH-CCCeeEEecc--cCCCCcCCCCccccccchhhcccccCCCC
Q 009955 85 KKDLASLGIGLQELGYTIVS-TG-------GTATSLEN-AGVSVTKVEQ--LTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (521)
Q Consensus 85 K~glvelAk~L~~lGfeIiA-Tg-------GTak~L~e-~GI~v~~Vsk--iTGfPEildGRVKTLHPkIhgGILarr~~ 153 (521)
++|+.++.+.|.+.|++|+= |+ .|.+.|.+ .|+|...-.. ++|-..--..+...+. -||=.+.--|+
T Consensus 116 ~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~l~--~~~i~I~IGDs 193 (237)
T PRK11009 116 KEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQWLK--KKNIRIFYGDS 193 (237)
T ss_pred hHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHHHH--hcCCeEEEcCC
Confidence 56699999999999999875 43 37888776 9996442111 1222000011122221 13335667799
Q ss_pred HHhHHHHHHcCCCceeE
Q 009955 154 KHHMDALSEHGIGTFDL 170 (521)
Q Consensus 154 ~~h~~~l~~~~I~~IDl 170 (521)
..|+...++.||..|=+
T Consensus 194 ~~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 194 DNDITAAREAGARGIRI 210 (237)
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 99999999999998743
No 65
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=44.81 E-value=44 Score=29.06 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=31.6
Q ss_pred CcccHHHHHHHHHHcCcEE--EEechhHHHHHHCCCeeEEecc
Q 009955 84 DKKDLASLGIGLQELGYTI--VSTGGTATSLENAGVSVTKVEQ 124 (521)
Q Consensus 84 DK~glvelAk~L~~lGfeI--iATgGTak~L~e~GI~v~~Vsk 124 (521)
|=.=.+.+++.|.+.|+++ .+.++-.+.+++.|++...+..
T Consensus 11 hv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~ 53 (139)
T PF03033_consen 11 HVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPG 53 (139)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSS
T ss_pred HHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecC
Confidence 4444788999999999884 5667888889999999988765
No 66
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=44.48 E-value=72 Score=32.26 Aligned_cols=93 Identities=22% Similarity=0.330 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCcEE-EEec---hh-HHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHHHH
Q 009955 88 LASLGIGLQELGYTI-VSTG---GT-ATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSE 162 (521)
Q Consensus 88 lvelAk~L~~lGfeI-iATg---GT-ak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~~ 162 (521)
-+.||+.|.+.|+++ +.+. +. .+.|++.|.+|..+++-.++ ..|..+-.+.+++
T Consensus 20 cl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~---------------------~~d~~~~~~~l~~ 78 (279)
T TIGR03590 20 CLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSR---------------------YDDALELINLLEE 78 (279)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCch---------------------hhhHHHHHHHHHh
Confidence 578999998889885 3332 22 47889999999888775431 1122222233444
Q ss_pred cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHH
Q 009955 163 HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPA 226 (521)
Q Consensus 163 ~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~ 226 (521)
. ..|+||+.-|-|...-. ..+| .+...+.++.|..+...
T Consensus 79 ~---~~d~vV~D~y~~~~~~~-------------------~~~k---~~~~~l~~iDD~~~~~~ 117 (279)
T TIGR03590 79 E---KFDILIVDHYGLDADWE-------------------KLIK---EFGRKILVIDDLADRPH 117 (279)
T ss_pred c---CCCEEEEcCCCCCHHHH-------------------HHHH---HhCCeEEEEecCCCCCc
Confidence 3 56999999996643221 1233 23457778888766544
No 67
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=44.41 E-value=1.3e+02 Score=28.82 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=30.4
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 75 NKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 75 i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
-+++||+-...-=-..+++.|.+.|+.|+.++-+...|++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~ 50 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA 50 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 3578888876655677889999999999999766554443
No 68
>PRK04247 hypothetical protein; Provisional
Probab=44.12 E-value=27 Score=35.78 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=24.0
Q ss_pred EEEEcCCCCHHHHHHHhhcCCCceEEEecC
Q 009955 414 EIVVAPSYTEEGLEILRGKSKNLRILETKK 443 (521)
Q Consensus 414 EvIiAP~f~~eAleiL~~K~KNlRlL~~~~ 443 (521)
=|+|||+|++.|+++|+++ .|+-+.+.+
T Consensus 208 GilvAp~i~~~A~~ll~~~--Gle~~~l~p 235 (238)
T PRK04247 208 GILVAPSITDRARRLLEKE--GLEFVKLEP 235 (238)
T ss_pred EEEECCcCCHHHHHHHHHc--CCeEEEecC
Confidence 3689999999999999877 899887764
No 69
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=44.05 E-value=1.3e+02 Score=29.08 Aligned_cols=31 Identities=32% Similarity=0.406 Sum_probs=26.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATg 106 (521)
|++||+-...-==..+|+.|.+.|++++.++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~ 39 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVG 39 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 6789998877666788999999999999764
No 70
>PRK05866 short chain dehydrogenase; Provisional
Probab=43.70 E-value=72 Score=32.02 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=29.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||.....-==..+|+.|.+.|++|+.++-....|++
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~ 79 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDA 79 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 578888775433457889999999999998766555543
No 71
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=43.49 E-value=1.2e+02 Score=29.17 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=28.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+-...-==..+|+.|.+.|++++.+.-+...++
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~ 50 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE 50 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 57899887654456789999999999998876554443
No 72
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=42.44 E-value=3.6e+02 Score=28.26 Aligned_cols=113 Identities=19% Similarity=0.105 Sum_probs=61.6
Q ss_pred HHHHHcCcE---EEEechhHHHHHHCCCeeEE-ecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHHH--HcCCC
Q 009955 93 IGLQELGYT---IVSTGGTATSLENAGVSVTK-VEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALS--EHGIG 166 (521)
Q Consensus 93 k~L~~lGfe---IiATgGTak~L~e~GI~v~~-VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~--~~~I~ 166 (521)
..+.+.|++ +.++..+..+-++.|..... +++. ++-+-.| |-. ..+-++++. +.+..
T Consensus 52 ~~a~~~g~~~i~L~t~~~~~~fYek~GF~~~~~~~~~--~~~~~~g------------i~~---~~~~~~~~~~~~~~~~ 114 (297)
T cd02169 52 NKAYEEGIFHLFLFTKPKNAKFFRGLGFKELANASDE--AVLLENG------------KPG---IEDYLKNLPKPDQPGK 114 (297)
T ss_pred HHHHHCCCCEEEEEEcccHHHHHHHCCCEEecccCCe--eeEecCC------------chH---HHHHHHHHHhhccCCC
Confidence 444556765 56665667788888886444 4431 0111111 110 123333332 34556
Q ss_pred ceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhcCCCCHHHHHHHHH
Q 009955 167 TFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAW 246 (521)
Q Consensus 167 ~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el~~g~~s~~~R~~LA~ 246 (521)
.|--+|.++-||-. |=-.|+|.|++.+..+.|+.-|. +...++.+.|.++..
T Consensus 115 ~~~~~~~~FDPiH~-------------------GHl~ii~~a~~~~d~~~V~i~~~---------~~~~~~~e~R~~ml~ 166 (297)
T cd02169 115 KIAAIVMNANPFTL-------------------GHRYLVEKAAAENDWVHLFVVSE---------DKSLFSFADRFKLVK 166 (297)
T ss_pred ceEEEEecCCCCch-------------------HHHHHHHHHHhhCCeEEEEEEcC---------CCCCCCHHHHHHHHH
Confidence 67777777777632 33346677777777666666554 223467777777766
Q ss_pred HHHH
Q 009955 247 KAFQ 250 (521)
Q Consensus 247 KAF~ 250 (521)
+|+.
T Consensus 167 ~ai~ 170 (297)
T cd02169 167 KGTK 170 (297)
T ss_pred HHhC
Confidence 6654
No 73
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=42.18 E-value=2.3e+02 Score=26.89 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=23.5
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEe
Q 009955 75 NKQALISLSDKKDLASLGIGLQELGYTIVST 105 (521)
Q Consensus 75 i~raLISVsDK~glvelAk~L~~lGfeIiAT 105 (521)
++++||+....-==..+++.|.+.|++++.+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~ 32 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGIN 32 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 4678888875433456889999999998765
No 74
>PLN02448 UDP-glycosyltransferase family protein
Probab=42.13 E-value=83 Score=34.29 Aligned_cols=104 Identities=10% Similarity=0.099 Sum_probs=62.4
Q ss_pred CCCcEEEEEec---CcccHHHHHHHHHHc--CcE--EEEechhHHHHHHC----CCeeEEecccCCCCcCCCCccccccc
Q 009955 73 QANKQALISLS---DKKDLASLGIGLQEL--GYT--IVSTGGTATSLENA----GVSVTKVEQLTCFPEMLDGRVKTLHP 141 (521)
Q Consensus 73 ~~i~raLISVs---DK~glvelAk~L~~l--Gfe--IiATgGTak~L~e~----GI~v~~VskiTGfPEildGRVKTLHP 141 (521)
++..-+|+..- +-.-+++||+.|... |+. +++|....+.++.. ||.+..+.+ |.|+.++.. ..+ +
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~--~~p~~~~~~-~~~-~ 84 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPN--VIPSELVRA-ADF-P 84 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCC--CCCCccccc-cCH-H
Confidence 45555666555 778899999999987 765 57888888888885 888877765 455543311 111 1
Q ss_pred hhhcccccCCCCHHhHHHH-HHcCCCceeEEEEec-cCcHHhhh
Q 009955 142 NIHGGILARRDQKHHMDAL-SEHGIGTFDLVVVNL-YPFYDKVT 183 (521)
Q Consensus 142 kIhgGILarr~~~~h~~~l-~~~~I~~IDlVVVNL-YPFe~tv~ 183 (521)
......+ +....+++++ ++.. .++|+||.++ .++-..++
T Consensus 85 ~~~~~~~--~~~~~~~~~~l~~~~-~~~~~VI~D~~~~wa~~vA 125 (459)
T PLN02448 85 GFLEAVM--TKMEAPFEQLLDRLE-PPVTAIVADTYLFWAVGVG 125 (459)
T ss_pred HHHHHHH--HHhHHHHHHHHHhcC-CCcEEEEECCccHHHHHHH
Confidence 1111211 1123344443 3333 6889999984 44555554
No 75
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=41.90 E-value=79 Score=30.78 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=29.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+....-==..+++.|.+.|+.++.++-+...++
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE 48 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888887654458899999999999999876554443
No 76
>PRK07063 short chain dehydrogenase; Provisional
Probab=41.30 E-value=64 Score=31.02 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=29.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+....-==..+++.|.+.|++++.+.-+...++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~ 45 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAE 45 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888888655457789999999999998865544444
No 77
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=41.17 E-value=1.4e+02 Score=28.37 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=73.7
Q ss_pred CcccHHHHHHHHH------HcCcEEEEe-chhHHHHHHCCCeeEEecccCCCCcCCCCccccccch-hh-cccccCCCC-
Q 009955 84 DKKDLASLGIGLQ------ELGYTIVST-GGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPN-IH-GGILARRDQ- 153 (521)
Q Consensus 84 DK~glvelAk~L~------~lGfeIiAT-gGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPk-Ih-gGILarr~~- 153 (521)
.+.++.-|.+.|. -.+..+++- ..|++.|++.|+++..+.+- + -.+|=++.|... ++ .-||.-|..
T Consensus 60 S~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~G~~~~~~~~~-~---~~~~l~~~l~~~~~~~~~ili~~~~~ 135 (249)
T PRK05928 60 SKNAVEFLLSALKKKKLKWPKNKKYAAIGEKTALALKKLGGKVVFVPED-G---ESSELLLELPELLLKGKRVLYLRGNG 135 (249)
T ss_pred CHHHHHHHHHHHHhcCcCCCCCCEEEEECHHHHHHHHHcCCCccccCCC-C---cChHHHHhChhhhcCCCEEEEECCCC
Confidence 3566777777665 236678887 68999999999987766431 1 234455555544 22 234444432
Q ss_pred --HHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Q 009955 154 --KHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231 (521)
Q Consensus 154 --~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el 231 (521)
+.-.+.|+++|+. ++.+-+|- ++.. ....++..+ ....+.-++.|+++|.-.+.+++.+
T Consensus 136 ~~~~l~~~L~~~G~~---v~~~~~Y~---~~~~--~~~~~~~~~-----------~~~~~~~d~ivftS~~~v~~~~~~~ 196 (249)
T PRK05928 136 GREVLGDTLEERGAE---VDECEVYE---RVPP--KLDGAELLA-----------RLQSGEVDAVIFTSPSTVRAFFSLA 196 (249)
T ss_pred CHHHHHHHHHHCCCE---EeEEEEEE---eeCC--CCChHHHHH-----------HHHhCCCCEEEECCHHHHHHHHHHh
Confidence 2334557788875 44444552 2211 111111111 1114677999999999988888877
Q ss_pred h
Q 009955 232 K 232 (521)
Q Consensus 232 ~ 232 (521)
.
T Consensus 197 ~ 197 (249)
T PRK05928 197 P 197 (249)
T ss_pred c
Confidence 4
No 78
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=40.84 E-value=67 Score=30.56 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=39.1
Q ss_pred CCcEEEEEec-CcccHHHHHHHHHH--cCcEEEEechhHHHHHH-CCCeeEEecc
Q 009955 74 ANKQALISLS-DKKDLASLGIGLQE--LGYTIVSTGGTATSLEN-AGVSVTKVEQ 124 (521)
Q Consensus 74 ~i~raLISVs-DK~glvelAk~L~~--lGfeIiATgGTak~L~e-~GI~v~~Vsk 124 (521)
+.+-|||.=- -|..++.|++.=.+ .-++|+|||-|...+++ -|++|..+..
T Consensus 4 ~k~IALIAHD~kK~~lv~f~~~~~~~L~~h~L~ATGTTG~~i~~atgL~v~~~~S 58 (142)
T COG1803 4 RKHIALIAHDHKKDDLVNFVQAHKELLSRHDLYATGTTGGLIQEATGLNVHRLKS 58 (142)
T ss_pred cceEEEEecchhHHHHHHHHHHHHHHhhhceEEEecCchHHHHHHhCCceEEeec
Confidence 4456787665 48999999987555 48999999999988876 5887776654
No 79
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.72 E-value=1.6e+02 Score=27.80 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=29.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||.-...-=-..+++.|.+.|++++.++-+..-++
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~ 43 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAE 43 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 47888877655556789999999999999876655443
No 80
>PRK06128 oxidoreductase; Provisional
Probab=40.50 E-value=2.1e+02 Score=28.58 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=25.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEe
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVST 105 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiAT 105 (521)
|++||+-.+.-==..+|+.|.+.|++++.+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~ 85 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALN 85 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEE
Confidence 689999987665678999999999999865
No 81
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=40.21 E-value=46 Score=29.47 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=68.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHc-CcEEEEechh--HHHH-------HHCCCeeEEecccCCCCcCCCCccccccchhhc
Q 009955 76 KQALISLSDKKDLASLGIGLQEL-GYTIVSTGGT--ATSL-------ENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHG 145 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~l-GfeIiATgGT--ak~L-------~e~GI~v~~VskiTGfPEildGRVKTLHPkIhg 145 (521)
|++||.-....==.++++.|.+. ++.++.++-. ...+ ++.|..+..+. -.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~-----------------~D--- 60 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIE-----------------CD--- 60 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEE-----------------SE---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccc-----------------cc---
Confidence 35666666544456789999998 6688888765 3322 33343333222 11
Q ss_pred ccccCCCCHHhHHHH-HH--cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccc---cchHHHHHHHHH-CCCCEEEE
Q 009955 146 GILARRDQKHHMDAL-SE--HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENID---IGGPAMIRAAAK-NHKDVLVV 218 (521)
Q Consensus 146 GILarr~~~~h~~~l-~~--~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnID---IGGpsmiRAAAK-N~~~V~Vv 218 (521)
+ .+++.++++ ++ ....++|+||.|---+....-. ..+.++..+.+. .|-..+.|++.. +..++.++
T Consensus 61 --~---~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~ 133 (167)
T PF00106_consen 61 --L---SDPESIRALIEEVIKRFGPLDILINNAGIFSDGSLD--DLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNI 133 (167)
T ss_dssp --T---TSHHHHHHHHHHHHHHHSSESEEEEECSCTTSBSGG--GSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEE
T ss_pred --c---cccccccccccccccccccccccccccccccccccc--cccchhhhhccccccceeeeeeehheeccccceEEe
Confidence 1 122223222 22 2347899999997766632222 234455555444 456677788877 77777777
Q ss_pred eCCCC
Q 009955 219 VGSED 223 (521)
Q Consensus 219 ~dP~D 223 (521)
++...
T Consensus 134 sS~~~ 138 (167)
T PF00106_consen 134 SSIAG 138 (167)
T ss_dssp EEGGG
T ss_pred cchhh
Confidence 76543
No 82
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=40.13 E-value=79 Score=34.71 Aligned_cols=85 Identities=26% Similarity=0.290 Sum_probs=59.7
Q ss_pred CCCCHHhHHH-HHHcCCCceeEEEEeccC-cHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEe-------C
Q 009955 150 RRDQKHHMDA-LSEHGIGTFDLVVVNLYP-FYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVV-------G 220 (521)
Q Consensus 150 rr~~~~h~~~-l~~~~I~~IDlVVVNLYP-Fe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~-------d 220 (521)
.|+-|+|+=+ ++++| -+|-||||| |-. ... ..+..++++.|| =||+-|= ++||..=. -
T Consensus 283 ~rNVPDdVL~llk~Ng----GvVMVnfy~~~is-c~~--~A~v~~v~~Hi~-----hIr~VaG-~~hIGlGg~yDGi~~~ 349 (419)
T KOG4127|consen 283 SRNVPDDVLQLLKENG----GVVMVNFYPGFIS-CSD--RATVSDVADHIN-----HIRAVAG-IDHIGLGGDYDGIPRV 349 (419)
T ss_pred ccCCcHHHHHHHhhcC----CEEEEEeeccccc-CCC--cccHHHHHHHHH-----HHHHhhc-cceeeccCCcCCcCCC
Confidence 4677887755 44555 489999999 433 322 678999999998 4777776 78877655 3
Q ss_pred CC------CHHHHHHHHhcCCCCHHHHHHHHHH
Q 009955 221 SE------DYPALLEFLKGNQDDQQFRRKLAWK 247 (521)
Q Consensus 221 P~------DY~~vl~el~~g~~s~~~R~~LA~K 247 (521)
|. -|+.+++||-+...+.+.-..||..
T Consensus 350 PkGLEDVSkYP~LiaeLl~r~~~~~E~~~l~g~ 382 (419)
T KOG4127|consen 350 PKGLEDVSKYPDLIAELLERGWWEEELIGLAGG 382 (419)
T ss_pred CcchhhhhhhHHHHHHHHhcCCcHHHHHHHhcc
Confidence 55 8999999998744555544446644
No 83
>PRK07856 short chain dehydrogenase; Provisional
Probab=38.89 E-value=1.4e+02 Score=28.72 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=25.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTA 109 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTa 109 (521)
+++||+....-==..+++.|.+.|++++.+.-..
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 5788877754444678899999999998886543
No 84
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=38.80 E-value=1.2e+02 Score=24.83 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=34.0
Q ss_pred HHHHHHHCCCCEEEEeCCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 009955 204 MIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVA 253 (521)
Q Consensus 204 miRAAAKN~~~V~Vv~dP~DY~~vl~el~~g~~s~~~R~~LA~KAF~~TA 253 (521)
.++.--++-.++..+-||+|....++.+.+ +.+.|+++|.+|.++..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~el~~~i~~ll~---~~~~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 32 GLREIFEDGEHIITYNDPEELAEKIEYLLE---NPEERRRIAKNARERVL 78 (92)
T ss_pred HHHHHcCCCCeEEEECCHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
Confidence 344445555566666677777777777754 77999999999998877
No 85
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.79 E-value=1.5e+02 Score=28.05 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=64.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
+++||+-..--=-..+++.|.+.|++++.+.-+..-+++. ..++.+ .++++..+.. +-.+++
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~------~~~~~~----~~~~~~~~~~--------D~~~~~ 69 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAV------AEEVEA----YGVKVVIATA--------DVSDYE 69 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH------HHHHHH----hCCeEEEEEC--------CCCCHH
Confidence 5788888754444567899999999999887554444331 011110 1223332221 112233
Q ss_pred hHHHH-H--HcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhc--cccchH-HHHHHHHH-----CCCCEEEEeCCC
Q 009955 156 HMDAL-S--EHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIEN--IDIGGP-AMIRAAAK-----NHKDVLVVVGSE 222 (521)
Q Consensus 156 h~~~l-~--~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEn--IDIGGp-smiRAAAK-----N~~~V~Vv~dP~ 222 (521)
.++++ + ....++||.||+|--++...-.. +.+.++.-+. ++.-|+ -+++++.+ +..++..+++..
T Consensus 70 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~ 145 (239)
T PRK07666 70 EVTAAIEQLKNELGSIDILINNAGISKFGKFL--ELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA 145 (239)
T ss_pred HHHHHHHHHHHHcCCccEEEEcCccccCCCcc--cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence 33222 1 12346899999987554321111 2344544343 333444 45555542 345566666654
No 86
>PRK09134 short chain dehydrogenase; Provisional
Probab=38.62 E-value=3.7e+02 Score=25.86 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=25.1
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 009955 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (521)
Q Consensus 74 ~i~raLISVsDK~glvelAk~L~~lGfeIiATgG 107 (521)
..+++||+....-==..+++.|.+.|+.++.+..
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 3457999887543345788999999999987643
No 87
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=38.51 E-value=1.2e+02 Score=27.54 Aligned_cols=63 Identities=29% Similarity=0.354 Sum_probs=47.5
Q ss_pred cccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHHHHcC
Q 009955 85 KKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHG 164 (521)
Q Consensus 85 K~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~~~~ 164 (521)
...+.++.+.+.+.|--|.+-..-...|.++|+ |+||=-|-||.. .+++++.+
T Consensus 78 ~~~l~~~l~~~~~~~~~i~~ic~G~~~La~agl--------------L~g~~~T~~~~~-------------~~~~~~~~ 130 (166)
T TIGR01382 78 NNKAVRLVREFVEKGKPVAAICHGPQLLISAGV--------------LRGKKLTSYPAI-------------IDDVKNAG 130 (166)
T ss_pred CHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCc--------------cCCCEEEcCccH-------------HHHHHHCC
Confidence 456899999999999999988888889999886 899888999873 34456555
Q ss_pred CCcee--EEEEe
Q 009955 165 IGTFD--LVVVN 174 (521)
Q Consensus 165 I~~ID--lVVVN 174 (521)
....| .||+.
T Consensus 131 ~~~~~~~~~v~d 142 (166)
T TIGR01382 131 AEYVDIEVVVVD 142 (166)
T ss_pred CeEEcCCCEEEE
Confidence 54444 45544
No 88
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=38.49 E-value=60 Score=31.34 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEeccc---CCCCcCCCCccccccchhhcccccCCCCHHhHHHHHHc
Q 009955 87 DLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQL---TCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEH 163 (521)
Q Consensus 87 glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~Vski---TGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~~~ 163 (521)
..+++|+.|.+.|++-+.=-.-.....+.|.....+.++ ++.|=+.+|.|.+ .++++++-+.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~---------------~e~~~~~~~~ 94 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRS---------------LEDIERLLDL 94 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCC---------------HHHHHHHHHc
Confidence 577888888888764322211001112233332222222 3344444443332 5667776665
Q ss_pred CCCceeEEEEeccCcH
Q 009955 164 GIGTFDLVVVNLYPFY 179 (521)
Q Consensus 164 ~I~~IDlVVVNLYPFe 179 (521)
| .|.||++-.+++
T Consensus 95 G---ad~vvigs~~l~ 107 (234)
T cd04732 95 G---VSRVIIGTAAVK 107 (234)
T ss_pred C---CCEEEECchHHh
Confidence 5 688888877763
No 89
>PRK07775 short chain dehydrogenase; Provisional
Probab=38.22 E-value=1.7e+02 Score=28.73 Aligned_cols=127 Identities=14% Similarity=0.201 Sum_probs=63.8
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCH
Q 009955 75 NKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQK 154 (521)
Q Consensus 75 i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~ 154 (521)
.+++||+...--==..+++.|.+.|++++.+......+++.. .++. ..++++.+++-.+ .++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~------~~~~----~~~~~~~~~~~Dl--------~~~ 71 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELV------DKIR----ADGGEAVAFPLDV--------TDP 71 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH------HHHH----hcCCeEEEEECCC--------CCH
Confidence 357888877543346788999999999988765443333310 0000 0123444332211 223
Q ss_pred HhHHH-HHH--cCCCceeEEEEeccCcHHhhhcCCCCChhhh--hhccccchHHHHHHHH------HCCCCEEEEeCC
Q 009955 155 HHMDA-LSE--HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDG--IENIDIGGPAMIRAAA------KNHKDVLVVVGS 221 (521)
Q Consensus 155 ~h~~~-l~~--~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~--IEnIDIGGpsmiRAAA------KN~~~V~Vv~dP 221 (521)
+.+++ +++ ...++||.||.|---....-.. ..+.++. .-++..-|+-.+..++ ++..++..+.+-
T Consensus 72 ~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~ 147 (274)
T PRK07775 72 DSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLH--EISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSD 147 (274)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcCCCcccc--cCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECCh
Confidence 33322 221 2245899999887433211111 1223332 2345667776554443 344556666653
No 90
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=37.62 E-value=97 Score=33.02 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=57.7
Q ss_pred CCCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc----chHHHHHHHHHCCCC-----------
Q 009955 150 RRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI----GGPAMIRAAAKNHKD----------- 214 (521)
Q Consensus 150 rr~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI----GGpsmiRAAAKN~~~----------- 214 (521)
|.=.+++++++.+.| =+|-||+||---+-.+....|+++.++.||- +| +++
T Consensus 201 RNl~D~qlkaI~~~g----GvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G----------~dhVglGsDf~g~~ 266 (313)
T COG2355 201 RNLSDEQLKAIAETG----GVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVG----------IDHVGLGSDFDGGT 266 (313)
T ss_pred CCCCHHHHHHHHhcC----CEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcC----------cceeEecccccCCC
Confidence 344577888888887 4788888884322111126799999999972 11 122
Q ss_pred --EEEEeCCCCHHHHHHHHhcCCCCHHHHHHHHHH
Q 009955 215 --VLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWK 247 (521)
Q Consensus 215 --V~Vv~dP~DY~~vl~el~~g~~s~~~R~~LA~K 247 (521)
+.-+=|+..|+.++++|..-..+.+.=+++|.+
T Consensus 267 ~~p~gled~~~l~~l~~~L~~~G~~e~~i~~i~~~ 301 (313)
T COG2355 267 GPPDGLEDVGKLPNLTAALIERGYSEEEIEKIAGE 301 (313)
T ss_pred CCchhhcChhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444667889999999998734788877777776
No 91
>PRK09291 short chain dehydrogenase; Provisional
Probab=37.08 E-value=1.7e+02 Score=27.83 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=25.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTAT 110 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak 110 (521)
+++||+.....==..+++.|.+.|++++++.-...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~ 37 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAP 37 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46777777543345678999999999999865443
No 92
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.05 E-value=53 Score=34.41 Aligned_cols=43 Identities=14% Similarity=0.303 Sum_probs=36.6
Q ss_pred eeecCCCCCHhHHHHHHHHHHHHhhhcceEE---EEEeCCeEEEec
Q 009955 474 KVVSEKKPQESELHDAEFAWLCVKHVKSNAI---VIAKVGTSILMK 516 (521)
Q Consensus 474 ~vVT~r~Pt~~e~~dL~FAwkvvK~VKSNAI---V~ak~~~tvGIG 516 (521)
.+.|+..|+.++++|..-|..++++.-+==| +++++|+.|++=
T Consensus 141 g~lt~~~P~~~d~~dI~~g~~aA~~lg~lDVGQ~aV~~~g~vvAvE 186 (279)
T COG3494 141 GPLTKKEPDNEDLRDIELGIEAANALGALDVGQGAVVVGGRVVAVE 186 (279)
T ss_pred CcccCCCCChhhHHHHHHHHHHHHHhccccccceeEEeCCeEEEEe
Confidence 6789999999999999999999999865433 578899998873
No 93
>PRK06138 short chain dehydrogenase; Provisional
Probab=36.91 E-value=2.1e+02 Score=27.01 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=29.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+...--=-..+++.|.+.|++++.+..+...++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~ 43 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAE 43 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHH
Confidence 46888887655556789999999999999987665444
No 94
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=36.79 E-value=76 Score=30.00 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=24.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTA 109 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTa 109 (521)
+++||+....-=-..+++.|.+.|++++.+.-..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4577777654445688899999999999875433
No 95
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=36.35 E-value=1.6e+02 Score=27.87 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=27.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+-...-==..+++.|.+.|++++.++-+..-++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~ 42 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAA 42 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 46888776444446899999999999998865544443
No 96
>PRK07985 oxidoreductase; Provisional
Probab=36.14 E-value=2.9e+02 Score=27.65 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=26.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATg 106 (521)
+++||+-...-==..+|+.|.+.|++++.++
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~ 80 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISY 80 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEec
Confidence 6899999876666788999999999998864
No 97
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=35.91 E-value=1.1e+02 Score=34.63 Aligned_cols=132 Identities=11% Similarity=0.162 Sum_probs=74.8
Q ss_pred cHHHHH-HHHHHcCcEE-EEechhHHHHHHC-CCeeEEecccCCCCcCCCC--ccccccchhhcccccCCCCHHhHHHHH
Q 009955 87 DLASLG-IGLQELGYTI-VSTGGTATSLENA-GVSVTKVEQLTCFPEMLDG--RVKTLHPNIHGGILARRDQKHHMDALS 161 (521)
Q Consensus 87 glvelA-k~L~~lGfeI-iATgGTak~L~e~-GI~v~~VskiTGfPEildG--RVKTLHPkIhgGILarr~~~~h~~~l~ 161 (521)
..++.| +.+...|+++ +|-|||+++|+++ .|||.+|. ++|| ++|.- +.+..+++| |++.-.+.-..++.+.
T Consensus 51 ~~v~~~~~~~~~~~~dviIsrG~ta~~i~~~~~iPVv~i~-~s~~-Dil~al~~a~~~~~~i--avv~~~~~~~~~~~~~ 126 (538)
T PRK15424 51 KAVTYIRKRLATERCDAIIAAGSNGAYLKSRLSVPVILIK-PSGF-DVMQALARARKLTSSI--GVVTYQETIPALVAFQ 126 (538)
T ss_pred HHHHHHHHHHhhCCCcEEEECchHHHHHHhhCCCCEEEec-CCHh-HHHHHHHHHHhcCCcE--EEEecCcccHHHHHHH
Confidence 345556 5566678875 5669999999995 78888775 5677 45542 345555665 5665555555555555
Q ss_pred HcCCCceeEEEEeccCcHHhhhcCCCCChhhhh-hc--cccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHh
Q 009955 162 EHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGI-EN--IDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLK 232 (521)
Q Consensus 162 ~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~I-En--IDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el~ 232 (521)
+. -.+|+.+.-..--++.-. .+.++. +. +=|||....+.|-+--..-..+.++ +.+.+.++
T Consensus 127 ~~--l~~~i~~~~~~~~~e~~~-----~v~~lk~~G~~~vvG~~~~~~~A~~~g~~g~~~~s~---e~i~~a~~ 190 (538)
T PRK15424 127 KT--FNLRIEQRSYVTEEDARG-----QINELKANGIEAVVGAGLITDLAEEAGMTGIFIYSA---ATVRQAFE 190 (538)
T ss_pred HH--hCCceEEEEecCHHHHHH-----HHHHHHHCCCCEEEcCchHHHHHHHhCCceEEecCH---HHHHHHHH
Confidence 32 233444433333322111 011111 11 2267777788888877777777754 45555554
No 98
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.73 E-value=3e+02 Score=26.15 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=25.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechh
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGT 108 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGT 108 (521)
+.+||+-...-==..+++.|.+.|++++.++-+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 568888775544567899999999999988643
No 99
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=35.49 E-value=1.2e+02 Score=31.32 Aligned_cols=107 Identities=19% Similarity=0.169 Sum_probs=67.1
Q ss_pred EEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHh
Q 009955 77 QALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHH 156 (521)
Q Consensus 77 raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h 156 (521)
++||+..---==++||++|.++|=+++-||--.+.|.+ +|-..|.||+=. ++-.+.++
T Consensus 7 TiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e---------------------~~~~~p~~~t~v-~Dv~d~~~ 64 (245)
T COG3967 7 TILITGGASGIGLALAKRFLELGNTVIICGRNEERLAE---------------------AKAENPEIHTEV-CDVADRDS 64 (245)
T ss_pred EEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHH---------------------HHhcCcchheee-ecccchhh
Confidence 56776653333478999999999999999999999988 344555555432 22222233
Q ss_pred HHHH---HHcCCCceeEEEEec---cCcHHhhhcCCCCChhhhhhccccchHHHHHHH
Q 009955 157 MDAL---SEHGIGTFDLVVVNL---YPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAA 208 (521)
Q Consensus 157 ~~~l---~~~~I~~IDlVVVNL---YPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAA 208 (521)
..+| -....+.++++|-|- |+.+-+ .. .-+++++-+.|+|-=-+=||=.
T Consensus 65 ~~~lvewLkk~~P~lNvliNNAGIqr~~dlt-~~--e~~~~~~~~eI~~Nl~API~Lt 119 (245)
T COG3967 65 RRELVEWLKKEYPNLNVLINNAGIQRNEDLT-GA--EDLLDDAEQEIATNLLAPIRLT 119 (245)
T ss_pred HHHHHHHHHhhCCchheeeecccccchhhcc-CC--cchhhHHHHHHHHhhhhHHHHH
Confidence 3333 245667888888873 554444 22 3466777777777644444433
No 100
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=35.35 E-value=2.1e+02 Score=27.44 Aligned_cols=86 Identities=26% Similarity=0.387 Sum_probs=57.3
Q ss_pred CCcEEEEEec--C--cccHHHHHHHHHHcCcEEEEech------hHHHHHHCCCeeEEecccCCCCcCCCCccccccchh
Q 009955 74 ANKQALISLS--D--KKDLASLGIGLQELGYTIVSTGG------TATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNI 143 (521)
Q Consensus 74 ~i~raLISVs--D--K~glvelAk~L~~lGfeIiATgG------Tak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkI 143 (521)
+..|+|+-.. | ..+.--+++.|.+.||+++-+|. -++..-++...|.-||- ++|.=+||=|.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs-------l~g~h~~l~~~l 83 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS-------LDGGHLTLVPGL 83 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe-------ccchHHHHHHHH
Confidence 3345655443 4 78888999999999999998865 12333467888888887 666666666655
Q ss_pred hcccccCCCCHHhHHHHHHcCCCceeEEEEeccCcH
Q 009955 144 HGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFY 179 (521)
Q Consensus 144 hgGILarr~~~~h~~~l~~~~I~~IDlVVVNLYPFe 179 (521)
.+.|++.|.+.|=+|+=---|++
T Consensus 84 -------------ve~lre~G~~~i~v~~GGvip~~ 106 (143)
T COG2185 84 -------------VEALREAGVEDILVVVGGVIPPG 106 (143)
T ss_pred -------------HHHHHHhCCcceEEeecCccCch
Confidence 35567777776665544444443
No 101
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.29 E-value=3.7e+02 Score=28.26 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=99.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
|.|+|+....-==..+|..|.+.|..++=+-++++.|++-.-.+ +-.+.++ +|.+++ +--.|.++
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l----~~~~~~~----~v~~~~-------~Dvs~~~~ 77 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEEL----RKLGSLE----KVLVLQ-------LDVSDEES 77 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHH----HHhCCcC----ccEEEe-------CccCCHHH
Confidence 45788887665567899999999999999999999998721111 1133333 444433 22234444
Q ss_pred hHHHHH--HcCCCceeEEEEec----cCcHHhhhcCCCCChhhhhhcccc---chHHHHHHHHHCC-----CCEEEEeCC
Q 009955 156 HMDALS--EHGIGTFDLVVVNL----YPFYDKVTSAGGIDFEDGIENIDI---GGPAMIRAAAKNH-----KDVLVVVGS 221 (521)
Q Consensus 156 h~~~l~--~~~I~~IDlVVVNL----YPFe~tv~~~~~~~~ee~IEnIDI---GGpsmiRAAAKN~-----~~V~Vv~dP 221 (521)
+.+..+ ..-.+.+|+.|.|- +-|.. ..+.+++-+-+|+ |=+.+.|+|...+ -|++|+.+.
T Consensus 78 ~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~------~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSi 151 (282)
T KOG1205|consen 78 VKKFVEWAIRHFGRVDVLVNNAGISLVGFLE------DTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSI 151 (282)
T ss_pred HHHHHHHHHHhcCCCCEEEecCccccccccc------cCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecc
Confidence 443332 24578999999983 22222 2344555555664 7788999998765 466777776
Q ss_pred CCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 009955 222 EDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASYDSAVSEWLW 264 (521)
Q Consensus 222 ~DY~~vl~el~~g~~s~~~R~~LA~KAF~~TA~YD~aIa~yl~ 264 (521)
+ |..+..++--+++-=|+.++.||+.-.++..
T Consensus 152 a-----------G~~~~P~~~~Y~ASK~Al~~f~etLR~El~~ 183 (282)
T KOG1205|consen 152 A-----------GKMPLPFRSIYSASKHALEGFFETLRQELIP 183 (282)
T ss_pred c-----------cccCCCcccccchHHHHHHHHHHHHHHHhhc
Confidence 6 4444444423344447888888888777764
No 102
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=35.26 E-value=59 Score=32.24 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=40.0
Q ss_pred CcchhhhHHHHHHHhHhcCCCeEEEeecCCcc---cccccCCHHHHHHHHHhcCCCCcCC
Q 009955 325 SYNNYLDADAAWNCVSEFKNPTCVIVKHTNPC---GVASRDDILEAYKLAVKADPVSAFG 381 (521)
Q Consensus 325 SYNN~lD~daA~~~v~ef~~pa~vivKH~NPC---GvA~~~~~~eAy~~A~~~DpvSAFG 381 (521)
.|-.+.|.+.|++.++++..|. ++||..-.| ||.+.+|..||.+-.-+.=-...||
T Consensus 19 ~~~~f~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg 77 (194)
T PF01071_consen 19 KYKVFTDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFG 77 (194)
T ss_dssp -EEEESSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTC
T ss_pred CeeEECCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccC
Confidence 4666678999999999998888 899987666 5667778877765544443334555
No 103
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=34.87 E-value=1e+02 Score=29.50 Aligned_cols=95 Identities=23% Similarity=0.204 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCcEEEEechhHHHH--------HHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHH
Q 009955 89 ASLGIGLQELGYTIVSTGGTATSL--------ENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDAL 160 (521)
Q Consensus 89 velAk~L~~lGfeIiATgGTak~L--------~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l 160 (521)
..+|+.|.+.|++++-|+-..+.+ ++.|.++ +-++-.++++++++
T Consensus 10 ~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~D~~~~~~v~~~ 62 (241)
T PF13561_consen 10 RAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEV---------------------------IQCDLSDEESVEAL 62 (241)
T ss_dssp HHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEE---------------------------EESCTTSHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCce---------------------------EeecCcchHHHHHH
Confidence 468899999999999998777653 2223221 22222344444444
Q ss_pred ----HHcCCCceeEEEEeccCcHHh-hhcC-CCCChhhhhhcccc---chHHHHHHHHH
Q 009955 161 ----SEHGIGTFDLVVVNLYPFYDK-VTSA-GGIDFEDGIENIDI---GGPAMIRAAAK 210 (521)
Q Consensus 161 ----~~~~I~~IDlVVVNLYPFe~t-v~~~-~~~~~ee~IEnIDI---GGpsmiRAAAK 210 (521)
.+..-+.||++|.|.-..... ..++ .+.+.++.-+.+|+ +...|+|++.+
T Consensus 63 ~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (241)
T PF13561_consen 63 FDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALP 121 (241)
T ss_dssp HHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233228899999887544321 1110 03456677777776 77788888866
No 104
>PRK08589 short chain dehydrogenase; Validated
Probab=34.24 E-value=2.5e+02 Score=27.54 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=27.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechh
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGT 108 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGT 108 (521)
+++||+-...-==..+|+.|.+.|++++.++-+
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 578988887655578899999999999998765
No 105
>PRK06914 short chain dehydrogenase; Provisional
Probab=34.19 E-value=1.6e+02 Score=28.63 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=27.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+...--=-..+++.|.+.|++++.++-+...++
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~ 41 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQE 41 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 45777776444446788999999999999876655443
No 106
>PRK05993 short chain dehydrogenase; Provisional
Probab=33.91 E-value=4.7e+02 Score=25.69 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=28.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+....-==..+|+.|.+.|++++.++-....|+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVA 42 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 57888877543335688999999999999876655444
No 107
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=33.76 E-value=1.9e+02 Score=30.10 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=37.1
Q ss_pred CCcEEEEEecC---cccHHHHHHHHHHcCc--EE-EEechh-----HHHHHHCCCeeEEec
Q 009955 74 ANKQALISLSD---KKDLASLGIGLQELGY--TI-VSTGGT-----ATSLENAGVSVTKVE 123 (521)
Q Consensus 74 ~i~raLISVsD---K~glvelAk~L~~lGf--eI-iATgGT-----ak~L~e~GI~v~~Vs 123 (521)
+++.+-++.-+ ..++.++.+.+.+.+. .+ +.|.|+ ++.|+++|+.-..||
T Consensus 61 Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~IS 121 (329)
T PRK13361 61 GVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNIS 121 (329)
T ss_pred CCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEE
Confidence 45667666653 4679999999988763 34 689996 578889999877775
No 108
>PRK12744 short chain dehydrogenase; Provisional
Probab=33.43 E-value=4.4e+02 Score=25.28 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=23.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEe
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVST 105 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiAT 105 (521)
+++||+.....==..+|+.|.+.|++++..
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 578998876655578999999999995544
No 109
>PRK07478 short chain dehydrogenase; Provisional
Probab=32.60 E-value=1.1e+02 Score=29.23 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=29.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+....-==..+++.|.+.|++++.++-+.+-+++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~ 45 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQ 45 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 578888876554577899999999999998766555444
No 110
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=32.36 E-value=91 Score=33.10 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=43.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcC--cEEEEech--------hHHHHHHCCCeeEEeccc
Q 009955 76 KQALISLSDKKDLASLGIGLQELG--YTIVSTGG--------TATSLENAGVSVTKVEQL 125 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lG--feIiATgG--------Tak~L~e~GI~v~~Vski 125 (521)
+.++++.+.-..+.++.+...+.| |+++-|++ |++.|+++||+++.|.+-
T Consensus 120 g~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 120 GDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEech
Confidence 568888888888888888887777 69999986 899999999999998774
No 111
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=32.21 E-value=2.8e+02 Score=26.73 Aligned_cols=33 Identities=9% Similarity=-0.008 Sum_probs=27.0
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 009955 75 NKQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (521)
Q Consensus 75 i~raLISVsDK~glvelAk~L~~lGfeIiATgG 107 (521)
-+++||+.....==..+|+.|.+.|+.++.+.-
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 467899988776677899999999999987643
No 112
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.18 E-value=4.2e+02 Score=26.73 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=24.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATg 106 (521)
+++||+-...-==..+|+.|.+.|.+++...
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~ 43 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVND 43 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 5788888766555778999999999998764
No 113
>PRK04155 chaperone protein HchA; Provisional
Probab=31.82 E-value=71 Score=33.24 Aligned_cols=128 Identities=18% Similarity=0.167 Sum_probs=69.9
Q ss_pred cEEEEEecCcccHHHHH-HHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcC--------CCCccccccchhhcc
Q 009955 76 KQALISLSDKKDLASLG-IGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEM--------LDGRVKTLHPNIHGG 146 (521)
Q Consensus 76 ~raLISVsDK~glvelA-k~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEi--------ldGRVKTLHPkIhgG 146 (521)
+++||=+++...+. +. ..+..-||+..=+--....|+++|+.|+.++- +|-+-. .|..|+..| +-++.
T Consensus 50 kkiL~v~t~~~~~~-~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~-~G~~~~~d~~s~~~~d~~v~~~~-~~~~~ 126 (287)
T PRK04155 50 KKILMIAADERYLP-MDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATL-SGNPVKFEYWAMPHEDEAVMGFY-EKYKS 126 (287)
T ss_pred CeEEEEEcCccccc-CCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEec-CCCccccccccccccchhHHHHH-HHhhh
Confidence 48999888765531 11 11224566555555668888999999888875 332211 122333333 12333
Q ss_pred cccCCCCHHhHHHH-HHcC--CCceeEEEEeccCcHHhhhcCCCC-ChhhhhhccccchHHHHHHHHHCCCCEEEEeCCC
Q 009955 147 ILARRDQKHHMDAL-SEHG--IGTFDLVVVNLYPFYDKVTSAGGI-DFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSE 222 (521)
Q Consensus 147 ILarr~~~~h~~~l-~~~~--I~~IDlVVVNLYPFe~tv~~~~~~-~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~ 222 (521)
.|...- .+.++ ++.. ...+|.|++ | ||. ...++-+|=+. -.+||.+.+|-+.|+.||.=-
T Consensus 127 ~l~~~~---~l~~v~~~~~~~~~dYDaV~i---P--------GG~g~~~dL~~~~~l--~~ll~~~~~~~K~VaAICHGP 190 (287)
T PRK04155 127 KFKQPK---KLADVVANLLAPDSDYAAVFI---P--------GGHGALIGLPESEDV--AAALQWALDNDRFIITLCHGP 190 (287)
T ss_pred hccCce---eHHHhhhhhcCCcccccEEEE---C--------CCCchHHHHhhCHHH--HHHHHHHHHcCCEEEEEChHH
Confidence 332211 11222 2222 456777753 2 232 23444454443 367899999999999999743
No 114
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=31.64 E-value=63 Score=32.69 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=34.4
Q ss_pred cEEEEEec----CcccHHHHHHHHHHcCcEEEEechh----HHHHHHCCCeeEEecc
Q 009955 76 KQALISLS----DKKDLASLGIGLQELGYTIVSTGGT----ATSLENAGVSVTKVEQ 124 (521)
Q Consensus 76 ~raLISVs----DK~glvelAk~L~~lGfeIiATgGT----ak~L~e~GI~v~~Vsk 124 (521)
+++||++. +-....+|++.|.+.|+++.--++. ...+++.|+++..+.-
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~ 58 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPS 58 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEec
Confidence 57888876 5556679999999999997664332 2334556888777753
No 115
>PRK07890 short chain dehydrogenase; Provisional
Probab=31.62 E-value=3.3e+02 Score=25.89 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=28.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+-...-==..+|+.|.+.|++++.+.-+..-++
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~ 43 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLD 43 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 56888887655556788999999999998875554443
No 116
>PRK07035 short chain dehydrogenase; Provisional
Probab=31.31 E-value=2.6e+02 Score=26.65 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=29.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
+++||+....-==..+++.|.+.|+.++.++-+.+-+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~ 45 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGC 45 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 6789988766556788999999999999887554443
No 117
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.25 E-value=5.1e+02 Score=25.30 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=66.2
Q ss_pred cEEEEEecCc-ccH-HHHHHHHHHcCcEEEEechhH---HHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccC
Q 009955 76 KQALISLSDK-KDL-ASLGIGLQELGYTIVSTGGTA---TSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILAR 150 (521)
Q Consensus 76 ~raLISVsDK-~gl-velAk~L~~lGfeIiATgGTa---k~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILar 150 (521)
|.+||+-.-. .|| ..+|+.|.+.|+.++-+.-.. +.+++ +.+ + + |++ + ++. ++
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~-------l~~-----~-~-g~~---~--~~~---~D 66 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKP-------LAE-----E-I-GCN---F--VSE---LD 66 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHH-------HHH-----h-c-CCc---e--EEE---cc
Confidence 5689988865 466 688999999999998764321 11221 100 0 1 211 1 111 22
Q ss_pred CCCHHhHHHHHH---cCCCceeEEEEeccCcHHh--hhcCCCCChhhhhhccccc---hHHHHHHHHHCC---CCEEEEe
Q 009955 151 RDQKHHMDALSE---HGIGTFDLVVVNLYPFYDK--VTSAGGIDFEDGIENIDIG---GPAMIRAAAKNH---KDVLVVV 219 (521)
Q Consensus 151 r~~~~h~~~l~~---~~I~~IDlVVVNLYPFe~t--v~~~~~~~~ee~IEnIDIG---GpsmiRAAAKN~---~~V~Vv~ 219 (521)
=.+++.++++-+ ...+.||++|.|-.-+... .....+.++++.-+.+|+. -.-++|++.+-. .++..++
T Consensus 67 v~~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~is 146 (260)
T PRK06603 67 VTNPKSISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLT 146 (260)
T ss_pred CCCHHHHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Confidence 223344333321 2346899999997533210 0110145677788888874 334566665433 4566665
Q ss_pred CCC
Q 009955 220 GSE 222 (521)
Q Consensus 220 dP~ 222 (521)
+..
T Consensus 147 S~~ 149 (260)
T PRK06603 147 YYG 149 (260)
T ss_pred cCc
Confidence 543
No 118
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=31.24 E-value=73 Score=31.75 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=32.1
Q ss_pred EEEEEecCccc----HHHHHHHHHHcCcEEEEech----hHHHHHHCCCeeEEec
Q 009955 77 QALISLSDKKD----LASLGIGLQELGYTIVSTGG----TATSLENAGVSVTKVE 123 (521)
Q Consensus 77 raLISVsDK~g----lvelAk~L~~lGfeIiATgG----Tak~L~e~GI~v~~Vs 123 (521)
++||++..-.| ..++|+.|.+.|+++.-.++ ...++++.|+++..+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~ 56 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIP 56 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEe
Confidence 68888884333 34899999999999966443 1233355688877764
No 119
>PRK07109 short chain dehydrogenase; Provisional
Probab=31.04 E-value=2.5e+02 Score=28.96 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=29.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+....-==..+|+.|.+.|++++.+.-....|++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~ 47 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEA 47 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 568888775444467889999999999988766655544
No 120
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=30.75 E-value=1.3e+02 Score=28.45 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=24.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTAT 110 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak 110 (521)
|++||+-..--=-..+++.|.+.|++++.+.....
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~ 35 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEE 35 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35666665444446788999999999998865443
No 121
>PRK08643 acetoin reductase; Validated
Probab=30.74 E-value=1.3e+02 Score=28.72 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=27.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTAT 110 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak 110 (521)
|++||+....-==..+++.|.+.|++++.++-...
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~ 37 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEE 37 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46788877665557899999999999998865443
No 122
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=30.53 E-value=1.3e+02 Score=31.61 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=48.9
Q ss_pred CHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhc-----c---------c-------cchHHHHHHHHHC
Q 009955 153 QKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIEN-----I---------D-------IGGPAMIRAAAKN 211 (521)
Q Consensus 153 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEn-----I---------D-------IGGpsmiRAAAKN 211 (521)
.++.++.++.+| ||.|++ .||.+.+++ .+.++-|++ + | .|....++..++.
T Consensus 72 ~eeR~~~l~~~g---VD~~~~--~~F~~~~~~---ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~ 143 (305)
T PRK05627 72 LRDKAELLAELG---VDYVLV--LPFDEEFAK---LSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKE 143 (305)
T ss_pred HHHHHHHHHHcC---CCEEEE--ecCCHHHhc---CCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
Confidence 467777788887 898888 899877763 577777775 2 2 3689999999998
Q ss_pred CCCEEEEeCCCCH
Q 009955 212 HKDVLVVVGSEDY 224 (521)
Q Consensus 212 ~~~V~Vv~dP~DY 224 (521)
|..-+++++|..|
T Consensus 144 ~g~~v~~v~~~~~ 156 (305)
T PRK05627 144 FGFEVTIVPEVKE 156 (305)
T ss_pred cCcEEEEeccEec
Confidence 8887888888643
No 123
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=30.45 E-value=1.4e+02 Score=31.33 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=47.0
Q ss_pred cccHHHHHHHHHHcCcEE-EEechh----HHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHH
Q 009955 85 KKDLASLGIGLQELGYTI-VSTGGT----ATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDA 159 (521)
Q Consensus 85 K~glvelAk~L~~lGfeI-iATgGT----ak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~ 159 (521)
.+|+.++.+.|++.|+.+ +.|+|. ...+++.|+.-..-+.+ |+.+|++..-. .|-+.....+++.+++
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~l----ei~dg~ltg~v---~g~iv~~k~K~~~L~~ 255 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANEL----EIMDGKLTGNV---LGDIVDAQYKADTLTR 255 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEE----EEECCEEEeEe---cCccCCcccHHHHHHH
Confidence 578889999999999975 677775 34455667643222211 23355442211 1112222455666655
Q ss_pred H-HHcCCCceeEEEE
Q 009955 160 L-SEHGIGTFDLVVV 173 (521)
Q Consensus 160 l-~~~~I~~IDlVVV 173 (521)
+ +++|+.+=+.|+|
T Consensus 256 la~~lgi~~~qtIaV 270 (322)
T PRK11133 256 LAQEYEIPLAQTVAI 270 (322)
T ss_pred HHHHcCCChhhEEEE
Confidence 4 5788877666655
No 124
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=30.40 E-value=2.3e+02 Score=26.36 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=28.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
+++||.....-=-..+++.|.+.|++++.+......+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~ 42 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAA 42 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHH
Confidence 5788888754444788899999999999887664443
No 125
>PRK08339 short chain dehydrogenase; Provisional
Probab=30.26 E-value=1.3e+02 Score=29.49 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=28.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
|++||+....-==..+|+.|.+.|++++.++-...-+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~ 45 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENL 45 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4789988876556778999999999999886444333
No 126
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=30.24 E-value=1.2e+02 Score=31.69 Aligned_cols=80 Identities=23% Similarity=0.270 Sum_probs=55.8
Q ss_pred CCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc----chHHHHHHHHHCCCCEEE----------
Q 009955 152 DQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI----GGPAMIRAAAKNHKDVLV---------- 217 (521)
Q Consensus 152 ~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI----GGpsmiRAAAKN~~~V~V---------- 217 (521)
=.++.++++.+.|= +|=+|+||.--.- . +..++++++++||- +|+ +||.+
T Consensus 208 ltD~~i~~ia~~GG----vigi~~~~~fl~~-~-~~~~~~~~~~hi~~i~~l~G~----------dhVgiGsDfdg~~~~ 271 (309)
T cd01301 208 LTDAQLKAIAETGG----VIGVNFYPAFLSP-G-ADATLDDVVRHIDYIVDLIGI----------DHVGLGSDFDGIGGT 271 (309)
T ss_pred CCHHHHHHHHHcCC----EEEEeeeHHHhCC-C-CCCCHHHHHHHHHHHHHhcCC----------CeEEECcccCCCCCC
Confidence 45677777887774 7889999865422 2 26799999999986 332 22222
Q ss_pred ---EeCCCCHHHHHHHHhcCCCCHHHHHHHHHH
Q 009955 218 ---VVGSEDYPALLEFLKGNQDDQQFRRKLAWK 247 (521)
Q Consensus 218 ---v~dP~DY~~vl~el~~g~~s~~~R~~LA~K 247 (521)
+.|+++|+.++++|.+-..|.+.-++++..
T Consensus 272 ~~gl~~~~~~~~l~~~L~~rG~s~~~i~~i~g~ 304 (309)
T cd01301 272 PGGLEDVSDLPNLTAELLERGYSEEEIEKIAGG 304 (309)
T ss_pred ccccCCHHHHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 456899999999997655777776666544
No 127
>PRK07825 short chain dehydrogenase; Provisional
Probab=30.17 E-value=1.6e+02 Score=28.54 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=27.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+...-.==..+++.|.+.|+.++.+.-....+++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~ 44 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKE 44 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 468887775433357889999999999888765555543
No 128
>PRK05872 short chain dehydrogenase; Provisional
Probab=30.11 E-value=89 Score=31.25 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=30.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+....-==..+|+.|.+.|++++.++-+.+.|++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~ 48 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAA 48 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 578988876544567889999999999998776665544
No 129
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=30.11 E-value=1.1e+02 Score=31.79 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=33.5
Q ss_pred CcccHHHHHHHHHHcCcEE--EEechhHHHHHHCCCeeEEecccC
Q 009955 84 DKKDLASLGIGLQELGYTI--VSTGGTATSLENAGVSVTKVEQLT 126 (521)
Q Consensus 84 DK~glvelAk~L~~lGfeI--iATgGTak~L~e~GI~v~~VskiT 126 (521)
|=.-++.+|+.|.+.|+++ +++..-.+.+++.|+.+..+....
T Consensus 8 hv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~ 52 (392)
T TIGR01426 8 HVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSAL 52 (392)
T ss_pred cccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcC
Confidence 3445789999999999986 455666788999999988776543
No 130
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.92 E-value=1.2e+02 Score=30.04 Aligned_cols=94 Identities=26% Similarity=0.243 Sum_probs=65.5
Q ss_pred HHHHHHHHcCcEEEEechhHHHHHH-CC--CeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHHHHcCCC
Q 009955 90 SLGIGLQELGYTIVSTGGTATSLEN-AG--VSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIG 166 (521)
Q Consensus 90 elAk~L~~lGfeIiATgGTak~L~e-~G--I~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~~~~I~ 166 (521)
.+|+.|.+.|++++...-+....++ .. +.+..|. .+..|.+.|++.||.
T Consensus 14 ~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~----------------------------gd~t~~~~L~~agi~ 65 (225)
T COG0569 14 SVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVI----------------------------GDATDEDVLEEAGID 65 (225)
T ss_pred HHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEE----------------------------ecCCCHHHHHhcCCC
Confidence 5788899999998888777777666 22 2222221 133456779999999
Q ss_pred ceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHH--CCCCEEEEeCCCCHHHHHHHH
Q 009955 167 TFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAK--NHKDVLVVVGSEDYPALLEFL 231 (521)
Q Consensus 167 ~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAK--N~~~V~Vv~dP~DY~~vl~el 231 (521)
..|+||+=. +.+ .+|+ -|.--|.| |-++|.+-+.-.+|..+++.+
T Consensus 66 ~aD~vva~t-----------~~d----~~N~-----i~~~la~~~~gv~~viar~~~~~~~~~~~~~ 112 (225)
T COG0569 66 DADAVVAAT-----------GND----EVNS-----VLALLALKEFGVPRVIARARNPEHEKVLEKL 112 (225)
T ss_pred cCCEEEEee-----------CCC----HHHH-----HHHHHHHHhcCCCcEEEEecCHHHHHHHHHc
Confidence 999999731 222 2232 34555666 679999999999999998887
No 131
>PRK07062 short chain dehydrogenase; Provisional
Probab=29.76 E-value=83 Score=30.34 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=29.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+-...-==..+|+.|.+.|++++.+.-+...|++
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 47 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLAS 47 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 578888876544467999999999999988765544443
No 132
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=29.63 E-value=71 Score=30.43 Aligned_cols=126 Identities=24% Similarity=0.249 Sum_probs=71.1
Q ss_pred CcccHHHHHHHHH--------HcCcEEEEe-chhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcc-cccCC--
Q 009955 84 DKKDLASLGIGLQ--------ELGYTIVST-GGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGG-ILARR-- 151 (521)
Q Consensus 84 DK~glvelAk~L~--------~lGfeIiAT-gGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgG-ILarr-- 151 (521)
.+.++.-|.+.|. -.+..+++. .+|++.|++.|+.+..+-+-.+..|-| +..|...+-++ +|.-|
T Consensus 50 S~~av~~~~~~l~~~~~~~~~~~~~~i~avG~~Ta~~l~~~G~~~~~~~~~~~~s~~L---~~~l~~~~~~~~vl~~~g~ 126 (231)
T PF02602_consen 50 SPNAVRAFFKALQSAGADLRLLKNIKIFAVGPKTAEALREYGFQPDFVPSSEGSSEGL---AELLKEQLRGKRVLILRGE 126 (231)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHSEEEESSHHHHHHHHHTT-EECEE-TTSSSHHHH---HGGHHHCCTTEEEEEEESS
T ss_pred CHHHHHHHHHHHhhhhhhhhhccCCeEEEEcHHHHHHHHHcCCCccccCCCCCCHHHH---HHHHHhhCCCCeEEEEcCC
Confidence 4555666666554 237788888 589999999999987666533332222 22222122211 22222
Q ss_pred -CCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHH
Q 009955 152 -DQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEF 230 (521)
Q Consensus 152 -~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~e 230 (521)
..+.=.+.|+++|+.-.-+.|-.- |=.. ...++.+.++-|.+ ++.++++|+-...+++.
T Consensus 127 ~~~~~l~~~L~~~g~~v~~~~vY~~-~~~~--------~~~~~~~~l~~~~~-----------~~v~ftS~~~~~~~~~~ 186 (231)
T PF02602_consen 127 GGRPDLPEKLREAGIEVTEVIVYET-PPEE--------LSPELKEALDRGEI-----------DAVVFTSPSAVRAFLEL 186 (231)
T ss_dssp SSCHHHHHHHHHTTEEEEEEECEEE-EEHH--------HHHHHHHHHHHTTT-----------SEEEESSHHHHHHHHHH
T ss_pred CccHHHHHHHHHCCCeEEEEEEeec-cccc--------chHHHHHHHHcCCC-----------CEEEECCHHHHHHHHHH
Confidence 244555678888877555554433 1111 12344444443333 89999999988888877
Q ss_pred Hh
Q 009955 231 LK 232 (521)
Q Consensus 231 l~ 232 (521)
+.
T Consensus 187 ~~ 188 (231)
T PF02602_consen 187 LK 188 (231)
T ss_dssp SS
T ss_pred hH
Confidence 64
No 133
>PLN02389 biotin synthase
Probab=29.30 E-value=1.4e+02 Score=32.21 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=47.3
Q ss_pred ccHHHHHHHHHHcCcEEEEec-----hhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHH
Q 009955 86 KDLASLGIGLQELGYTIVSTG-----GTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDAL 160 (521)
Q Consensus 86 ~glvelAk~L~~lGfeIiATg-----GTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l 160 (521)
+.+.++.+.+++.|.+|..|. -+.+.|+++|+....+ .+++ ..-++|+|+++--.. +.-+-++.+
T Consensus 153 e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~--------~LeT-s~~~y~~i~~~~s~e-~rl~ti~~a 222 (379)
T PLN02389 153 NQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNH--------NLDT-SREYYPNVITTRSYD-DRLETLEAV 222 (379)
T ss_pred HHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEe--------eecC-ChHHhCCcCCCCCHH-HHHHHHHHH
Confidence 377888888888899998555 4788999999965443 3444 233555555432111 112344556
Q ss_pred HHcCCCceeEEEEec
Q 009955 161 SEHGIGTFDLVVVNL 175 (521)
Q Consensus 161 ~~~~I~~IDlVVVNL 175 (521)
.+.||..--=+++-|
T Consensus 223 ~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 223 REAGISVCSGGIIGL 237 (379)
T ss_pred HHcCCeEeEEEEECC
Confidence 677765433344444
No 134
>PRK07832 short chain dehydrogenase; Provisional
Probab=29.24 E-value=1.3e+02 Score=29.26 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=25.2
Q ss_pred EEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 77 QALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 77 raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
++||......=-..+++.|.+.|++++.++-....++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~ 38 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLA 38 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4666665443336788999999999988765444443
No 135
>TIGR03363 VI_chp_8 type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=29.21 E-value=40 Score=35.80 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=44.7
Q ss_pred cCCcccccccC-CHHHHHHHHH-hcCCCCcCCCEEEeccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHH
Q 009955 352 HTNPCGVASRD-DILEAYKLAV-KADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEIL 429 (521)
Q Consensus 352 H~NPCGvA~~~-~~~eAy~~A~-~~DpvSAFGGIvA~Nr~vD~~~A~~i~~~~~~~d~~~~~F~EvIiAP~f~~eAleiL 429 (521)
-.+|||.=... ...++.+.++ ..+|-..||.++.=...+|=..- ...+.++|
T Consensus 12 ~~~P~G~dl~yd~~f~~l~~~~~~~~~~~~~g~~~~~~~~~DW~~V--------------------------~~~~~~lL 65 (353)
T TIGR03363 12 DDSPCGEDLEYSAEFDRLKEARREDDPELQQGDWVTELKAADWPAV--------------------------ERLASELL 65 (353)
T ss_pred CCCCCCCCcccCHHHHHHHHHHhcCCcccccccccccccccCHHHH--------------------------HHHHHHHH
Confidence 36899987754 4568888888 47777788887754444443322 24577899
Q ss_pred hhcCCCceEEEe
Q 009955 430 RGKSKNLRILET 441 (521)
Q Consensus 430 ~~K~KNlRlL~~ 441 (521)
++|+|+|||+-+
T Consensus 66 ~~~sKDLrv~~~ 77 (353)
T TIGR03363 66 KTRSKDLRLAAW 77 (353)
T ss_pred HhcChHHHHHHH
Confidence 889999998743
No 136
>PRK06125 short chain dehydrogenase; Provisional
Probab=28.98 E-value=1.5e+02 Score=28.61 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=29.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+-...-==..+++.|.+.|++++.++-+...+++
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 46 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEA 46 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 578888875555567889999999999999876655543
No 137
>PRK00536 speE spermidine synthase; Provisional
Probab=28.96 E-value=42 Score=34.59 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=38.4
Q ss_pred chhHHHHHHCCCeeEEecccCCCCcCCCCcc----ccccchhhcccccCCCCHHhHHHHHHcCCCceeEEEEe-ccC
Q 009955 106 GGTATSLENAGVSVTKVEQLTCFPEMLDGRV----KTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVN-LYP 177 (521)
Q Consensus 106 gGTak~L~e~GI~v~~VskiTGfPEildGRV----KTLHPkIhgGILarr~~~~h~~~l~~~~I~~IDlVVVN-LYP 177 (521)
|||++-+-++.-.|+.|. +|+.| |+-.|.+|++ +....-+-+. .+.++.-+.+|+||+. +||
T Consensus 84 Gg~~REvLkh~~~v~mVe--------ID~~Vv~~~k~~lP~~~~~-~~DpRv~l~~-~~~~~~~~~fDVIIvDs~~~ 150 (262)
T PRK00536 84 LELAHQLFKYDTHVDFVQ--------ADEKILDSFISFFPHFHEV-KNNKNFTHAK-QLLDLDIKKYDLIICLQEPD 150 (262)
T ss_pred hHHHHHHHCcCCeeEEEE--------CCHHHHHHHHHHCHHHHHh-hcCCCEEEee-hhhhccCCcCCEEEEcCCCC
Confidence 677777777753444443 56666 7778888876 3332222222 3555555789999999 655
No 138
>PRK07774 short chain dehydrogenase; Provisional
Probab=28.93 E-value=1.2e+02 Score=28.66 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=27.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
+++||.....-==..+++.|.+.|++++.++-+...+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~ 43 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGA 43 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4688887765445678899999999999987655443
No 139
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=28.74 E-value=6.2e+02 Score=29.30 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=26.9
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 74 ~i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
.-+++||...---==..+++.|.+.|++|++..-....+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl 117 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA 117 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 335688887743333467788999999999876555444
No 140
>PRK06172 short chain dehydrogenase; Provisional
Probab=28.73 E-value=85 Score=29.94 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=29.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||.-....==..+++.|.+.|++++.+.-+.+-++
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~ 45 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGE 45 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 57888887665566789999999999999987765544
No 141
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.67 E-value=4.2e+02 Score=25.62 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=24.0
Q ss_pred cEEEEEecCc-ccH-HHHHHHHHHcCcEEEEe
Q 009955 76 KQALISLSDK-KDL-ASLGIGLQELGYTIVST 105 (521)
Q Consensus 76 ~raLISVsDK-~gl-velAk~L~~lGfeIiAT 105 (521)
+++||.-... .+| ..+|+.|.+.|++++.+
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 5788888764 344 67889999999999876
No 142
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=28.56 E-value=2.7e+02 Score=26.42 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=25.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgG 107 (521)
+++||+....-==..+|+.|.+.|++++.++-
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r 37 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGR 37 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 57888887655556788999999999988753
No 143
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=28.51 E-value=1.5e+02 Score=28.58 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=26.7
Q ss_pred EEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 77 QALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 77 raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
++||+-...-==..+|+.|.+.|++++.+.-....+++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~ 39 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEK 39 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 46666665433456889999999999998766555443
No 144
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=28.37 E-value=5.1e+02 Score=25.86 Aligned_cols=142 Identities=22% Similarity=0.243 Sum_probs=83.0
Q ss_pred HHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHHHHcCCCceeE
Q 009955 91 LGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDL 170 (521)
Q Consensus 91 lAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~~~~I~~IDl 170 (521)
+...+.++||+++=++-|-+.+-+.|+... +++ +-+| ||-.| -|+.+|.+.| +|.
T Consensus 17 W~~FF~~LG~~Vv~S~~T~k~i~~~G~~~~-~~e-~C~P------~Kl~h--------------GHv~~L~~k~---vD~ 71 (221)
T PF09989_consen 17 WQTFFTELGFEVVLSPPTNKEILDKGVKSA-PSE-FCFP------VKLAH--------------GHVADLLEKG---VDY 71 (221)
T ss_pred HHHHHHHcCCEEEECCCCcHHHHHHHhhhC-CCC-cchh------HHHHH--------------HHHHHHHhCC---CCE
Confidence 346779999999999999988888898532 222 3666 45555 4778888744 455
Q ss_pred EEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHH--HCC--CCEEEEeCCCC--HHHHHHHHhc-----CCCCHH
Q 009955 171 VVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAA--KNH--KDVLVVVGSED--YPALLEFLKG-----NQDDQQ 239 (521)
Q Consensus 171 VVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAA--KN~--~~V~Vv~dP~D--Y~~vl~el~~-----g~~s~~ 239 (521)
+. +|.-..+.+..+-...+-.=-+=.|=|.|||++- ++. +-...+.|-.+ ++.+.+.|.+ | ++..
T Consensus 72 IF---~P~i~~~~~~~~~~~~~~~CP~~~g~P~~i~~~~~~~~~~~~~l~p~i~~~~~g~~~~~~~l~~~~~~lg-~~~~ 147 (221)
T PF09989_consen 72 IF---LPRIVSLPKEKDDSPNSYNCPKVQGLPDMIRANFFEPELGIRLLSPVIDFSNKGKESLAKALYELGKRLG-ISRK 147 (221)
T ss_pred EE---ECCccccccccCCCCceEeCHhHHhHHHHHHHhcccccCCCeEEeeeeccCccchHHHHHHHHHHHHHcC-CCHH
Confidence 54 4654443321000001111123468899999999 665 56667777765 3555555532 3 3433
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 009955 240 FRRKLAWKAFQHVASYDSAVSE 261 (521)
Q Consensus 240 ~R~~LA~KAF~~TA~YD~aIa~ 261 (521)
.=++--.+|++.-..|...+-+
T Consensus 148 ~~~~A~~~A~~~~~~~~~~l~~ 169 (221)
T PF09989_consen 148 EIRRAFEKALEAQKAFRRELRK 169 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555555556555443
No 145
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=28.32 E-value=1.7e+02 Score=31.12 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=36.2
Q ss_pred CCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEE
Q 009955 151 RDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVL 216 (521)
Q Consensus 151 r~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~ 216 (521)
|-++++++.+.+.|+..|.+++- .-|+.-...= +.+.+++++++ ..+++.|-+.-..|.
T Consensus 72 r~~~~di~~a~~~g~~~i~i~~~-~Sd~~~~~~~--~~s~~e~l~~~----~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 72 RARDADIEAAARCGVDAVHISIP-VSDLQIEAKL--RKDRAWVLERL----ARLVSFARDRGLFVS 130 (365)
T ss_pred CCCHHHHHHHHcCCcCEEEEEEc-cCHHHHHHHh--CcCHHHHHHHH----HHHHHHHHhCCCEEE
Confidence 45678898889999887666552 2122111111 45789999997 457776655444443
No 146
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=28.19 E-value=50 Score=33.61 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCHHHHHHHhhcCCCceEEEecC
Q 009955 412 FYEIVVAPSYTEEGLEILRGKSKNLRILETKK 443 (521)
Q Consensus 412 F~EvIiAP~f~~eAleiL~~K~KNlRlL~~~~ 443 (521)
.=-+++||++++.|.+.|+++ +|+.+.+++
T Consensus 183 VRGilvA~~i~~~a~~ll~~~--glef~~ldp 212 (228)
T PF01939_consen 183 VRGILVAPSITPQARELLEDR--GLEFVELDP 212 (228)
T ss_dssp EEEEEEES-B-HHHHHHHHHH--T-EEEE---
T ss_pred eeEEEECCCCCHHHHHHHHHc--CCEEEEecc
Confidence 346799999999999999777 899888874
No 147
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=28.18 E-value=32 Score=30.69 Aligned_cols=60 Identities=35% Similarity=0.431 Sum_probs=43.9
Q ss_pred EEEec-CcccHHHHHHHHHHcC---cEEEEech----hHHHHHHCCCeeEEeccc--CCCCcCCCCcccc
Q 009955 79 LISLS-DKKDLASLGIGLQELG---YTIVSTGG----TATSLENAGVSVTKVEQL--TCFPEMLDGRVKT 138 (521)
Q Consensus 79 LISVs-DK~glvelAk~L~~lG---feIiATgG----Tak~L~e~GI~v~~Vski--TGfPEildGRVKT 138 (521)
...+. |..++..|...|.+.+ +-+-+||| =+.+|.++|++|..|+-. -.+.+.+++|.||
T Consensus 25 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~E~tg~y~~~l~~~L~~~g~~v~~vnp~~~~~~~~~~~~~~Kt 94 (144)
T PF01548_consen 25 RFKFENDPAGLEKLLDWLASLGPVLVVMEATGGYWRPLADFLQDAGIEVVVVNPLQVKRFRKSLGRRAKT 94 (144)
T ss_pred EEEEeccccchhHHhhhhccccccccccccccccchhhhhheeccccccccccccccccccccccccccc
Confidence 33444 7899999999998886 44556774 357888899999988754 4666666677776
No 148
>PRK06194 hypothetical protein; Provisional
Probab=28.12 E-value=1.8e+02 Score=28.31 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=27.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+...--==..+++.|.+.|++++.++-....+++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~ 45 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDR 45 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence 578888765333357889999999999988755444433
No 149
>PRK09072 short chain dehydrogenase; Provisional
Probab=28.12 E-value=5.4e+02 Score=24.78 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=27.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+....-==.++++.|.+.|++++.+.-..+.++
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~ 43 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLE 43 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 46888876543347789999999999998865544444
No 150
>PF13173 AAA_14: AAA domain
Probab=27.96 E-value=91 Score=27.47 Aligned_cols=45 Identities=31% Similarity=0.352 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHcC--cEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccc--cccc
Q 009955 85 KKDLASLGIGLQELG--YTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVK--TLHP 141 (521)
Q Consensus 85 K~glvelAk~L~~lG--feIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVK--TLHP 141 (521)
-++..+..+.|.+.+ +.|+-||.....|.+. ..+.+.||+. ++||
T Consensus 73 ~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~------------~~~~l~gr~~~~~l~P 121 (128)
T PF13173_consen 73 LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKD------------IAESLAGRVIEIELYP 121 (128)
T ss_pred hccHHHHHHHHHHhccCceEEEEccchHHHhhc------------ccccCCCeEEEEEECC
Confidence 467888999999887 8999999988888662 2367889987 6666
No 151
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=27.93 E-value=20 Score=37.99 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=64.9
Q ss_pred EEecCcccHHHHHHHHHH----cCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 80 ISLSDKKDLASLGIGLQE----LGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 80 ISVsDK~glvelAk~L~~----lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
++..|.+.++++|+...= .|.|.....|.++.|++.||++ ..|...+--+. +|+..
T Consensus 11 ~~~~d~~~l~~~~~~~~id~vi~g~E~~l~~~~~d~l~~~Gi~~-------------------~g~s~~a~~l~-~dK~~ 70 (379)
T PRK13790 11 ISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKV-------------------FGPNKQAAQIE-GSKLF 70 (379)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhCCCcE-------------------ECCCHHHHHHh-CCHHH
Confidence 355678888888876322 1222222346677788877753 23333333333 23333
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcc-ccchHHHHHHHHHC-CCCEEEEeCCCCHHHHHHHH
Q 009955 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENI-DIGGPAMIRAAAKN-HKDVLVVVGSEDYPALLEFL 231 (521)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnI-DIGGpsmiRAAAKN-~~~V~Vv~dP~DY~~vl~el 231 (521)
-.+-|+++||+...-..++ +.+++.+.+ .+|.|-+|.+.--- -+.|.++.+.++....++++
T Consensus 71 ~k~~l~~~gIptp~~~~~~--------------~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~ 134 (379)
T PRK13790 71 AKKIMEKYNIPTADYKEVE--------------RKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIM 134 (379)
T ss_pred HHHHHHHCCCCCCCEEEEC--------------CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH
Confidence 3456899999977643321 123333322 35788888765211 14678887777665555543
No 152
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=27.79 E-value=5.4e+02 Score=24.56 Aligned_cols=32 Identities=9% Similarity=0.046 Sum_probs=25.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgG 107 (521)
+++||+-...-==..+|+.|.+.|++++.++-
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 57888887654456788999999999988753
No 153
>PLN02173 UDP-glucosyl transferase family protein
Probab=27.64 E-value=1.2e+02 Score=33.30 Aligned_cols=94 Identities=7% Similarity=0.095 Sum_probs=54.5
Q ss_pred CcccHHHHHHHHHHcCcEE--EEechhHHHHHH---CCCeeEEecccCCCCcC-CCCccccccc-hhhcccccCCCCHHh
Q 009955 84 DKKDLASLGIGLQELGYTI--VSTGGTATSLEN---AGVSVTKVEQLTCFPEM-LDGRVKTLHP-NIHGGILARRDQKHH 156 (521)
Q Consensus 84 DK~glvelAk~L~~lGfeI--iATgGTak~L~e---~GI~v~~VskiTGfPEi-ldGRVKTLHP-kIhgGILarr~~~~h 156 (521)
.-.-+++||+.|..+|+.| +.|....+.+.. .+|.+..+.+ |.|+- .+ + +.++ ....... ++ ....
T Consensus 18 Hi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipd--glp~~~~~-~--~~~~~~~~~~~~-~~-~~~~ 90 (449)
T PLN02173 18 HITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISD--GYDQGGFS-S--AGSVPEYLQNFK-TF-GSKT 90 (449)
T ss_pred cHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCC--CCCCcccc-c--ccCHHHHHHHHH-Hh-hhHH
Confidence 3455889999999998876 788887766642 2477777764 77652 12 1 2222 2222111 11 1223
Q ss_pred HHH-HHHc--CCCceeEEEEec-cCcHHhhhc
Q 009955 157 MDA-LSEH--GIGTFDLVVVNL-YPFYDKVTS 184 (521)
Q Consensus 157 ~~~-l~~~--~I~~IDlVVVNL-YPFe~tv~~ 184 (521)
+++ ++.+ +-.|||.||.++ .||-..|++
T Consensus 91 ~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~ 122 (449)
T PLN02173 91 VADIIRKHQSTDNPITCIVYDSFMPWALDLAR 122 (449)
T ss_pred HHHHHHHhhccCCCceEEEECCcchhHHHHHH
Confidence 333 3332 225789999987 677777765
No 154
>PRK08177 short chain dehydrogenase; Provisional
Probab=27.50 E-value=1.8e+02 Score=27.43 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=24.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTAT 110 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak 110 (521)
+++||.-..--==-.+++.|.+.|++|+.+.-+..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 45777666433334678999999999998876543
No 155
>PRK09242 tropinone reductase; Provisional
Probab=27.40 E-value=98 Score=29.69 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=29.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
|++||+....-==..+++.|.+.|++|+.++-+..-+++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~ 48 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQ 48 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 578888776554578899999999999998766655543
No 156
>PRK06139 short chain dehydrogenase; Provisional
Probab=27.08 E-value=1.7e+02 Score=30.39 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=28.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+-...-==..+|+.|.+.|++++.+.-....|++
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~ 46 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQA 46 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 568887775444467889999999999988765555543
No 157
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.00 E-value=2.1e+02 Score=27.41 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=26.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+-...-==..+++.|.+.|+.|+.+.-....++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~ 39 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLE 39 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 35666666544446788999999999998865544443
No 158
>PRK06114 short chain dehydrogenase; Provisional
Probab=26.88 E-value=5.6e+02 Score=24.57 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=25.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgG 107 (521)
+++||+-...-==..+|+.|.+.|++++.+.-
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r 40 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDL 40 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 57888877665567889999999999998754
No 159
>PLN02572 UDP-sulfoquinovose synthase
Probab=26.83 E-value=1.4e+02 Score=32.42 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=26.2
Q ss_pred CCCCCCCcEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 009955 69 SSSSQANKQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 69 ~~~~~~i~raLISVsDK~glvelAk~L~~lGfeIiATg 106 (521)
+|++-+.+++||+...-===-.+++.|.+.|++++...
T Consensus 41 ~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 41 SSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 34445667899887633223467899999999998864
No 160
>PRK08263 short chain dehydrogenase; Provisional
Probab=26.80 E-value=3.5e+02 Score=26.37 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=27.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+-..--==..+++.|.+.|++++.+.-....|++
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~ 42 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARDTATLAD 42 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 467887764333356889999999999988766555543
No 161
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.59 E-value=1.3e+02 Score=31.24 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCCcEEEEE-----ecCcccHHHHHHHHHHcCcEEE----EechhHHHHHHCCCeeEEe--ccc-CCC----CcCCCCcc
Q 009955 73 QANKQALIS-----LSDKKDLASLGIGLQELGYTIV----STGGTATSLENAGVSVTKV--EQL-TCF----PEMLDGRV 136 (521)
Q Consensus 73 ~~i~raLIS-----VsDK~glvelAk~L~~lGfeIi----ATgGTak~L~e~GI~v~~V--ski-TGf----PEildGRV 136 (521)
.+||-=.|. ..|-...++-|+.|.+.||+++ -+.=+++.|.+.|-.+... +-| +|. |+.+.==+
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~ 171 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIII 171 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHH
Confidence 466643443 2256677888888888899998 3466899999999887744 222 121 11110000
Q ss_pred ccc-cchhhcccccCCCCHHhHHHHHHcCCCceeEEEEe
Q 009955 137 KTL-HPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVN 174 (521)
Q Consensus 137 KTL-HPkIhgGILarr~~~~h~~~l~~~~I~~IDlVVVN 174 (521)
+.. -|-|-+|=. ..++|..++-++|. |-|+||
T Consensus 172 e~~~vpVIveaGI---~tpeda~~AmelGA---dgVlV~ 204 (250)
T PRK00208 172 EQADVPVIVDAGI---GTPSDAAQAMELGA---DAVLLN 204 (250)
T ss_pred HhcCCeEEEeCCC---CCHHHHHHHHHcCC---CEEEEC
Confidence 101 144444322 35788888777765 677877
No 162
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=26.29 E-value=1e+02 Score=33.02 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=27.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATg 106 (521)
|-|||+-.|--==-.+|+.|.++||.++|.-
T Consensus 30 k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agc 60 (322)
T KOG1610|consen 30 KAVLITGCDSGFGRLLAKKLDKKGFRVFAGC 60 (322)
T ss_pred cEEEEecCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 4699999998777889999999999999975
No 163
>PRK07791 short chain dehydrogenase; Provisional
Probab=26.24 E-value=4e+02 Score=26.55 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=25.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATg 106 (521)
+++||+-...-==..+|+.|.+.|++++.+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~ 37 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVND 37 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEee
Confidence 5788888876555778999999999998864
No 164
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=26.14 E-value=2.2e+02 Score=29.75 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=50.2
Q ss_pred HHHHHHHHHCCCC---EEEEeCCCCHHHHHHHHhcC---------CCCHHHHHHHHHHHHHHHHhHHHHH
Q 009955 202 PAMIRAAAKNHKD---VLVVVGSEDYPALLEFLKGN---------QDDQQFRRKLAWKAFQHVASYDSAV 259 (521)
Q Consensus 202 psmiRAAAKN~~~---V~Vv~dP~DY~~vl~el~~g---------~~s~~~R~~LA~KAF~~TA~YD~aI 259 (521)
..|+|++|+.+.. |+|-.|..|++.+.+.|+.| ..+.+...+++.+.-..+..|+..+
T Consensus 64 ~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 64 KNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 6789999999853 99999999999999998742 5788999999999999999998766
No 165
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.10 E-value=1.2e+02 Score=30.59 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHcCc-EEEEechhHHHHHHCCCeeEEec---ccCCCCcCCCCccccccchhhcccccCCCCHHhHHHHHH
Q 009955 87 DLASLGIGLQELGY-TIVSTGGTATSLENAGVSVTKVE---QLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSE 162 (521)
Q Consensus 87 glvelAk~L~~lGf-eIiATgGTak~L~e~GI~v~~Vs---kiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~~ 162 (521)
..+++|+.+.+.|+ +|+-|.=.+. ....|.....+. +.++.|=+++|.++|+ ++++.+.+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~---------------~d~~~l~~ 94 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASECFMPLCYGGGIKTL---------------EQAKKIFS 94 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhCCCCEEECCCCCCH---------------HHHHHHHH
Confidence 68899999999996 3333311000 011222222222 2245555566655554 45666665
Q ss_pred cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCC--CEEEEeCC
Q 009955 163 HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHK--DVLVVVGS 221 (521)
Q Consensus 163 ~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~--~V~Vv~dP 221 (521)
.| +|-|++|-. ++| .|.+++..++.|. .+.|=.|.
T Consensus 95 ~G---~~~vvigs~----------------~~~-----~~~~~~~~~~~~~~~~i~vsiD~ 131 (258)
T PRK01033 95 LG---VEKVSINTA----------------ALE-----DPDLITEAAERFGSQSVVVSIDV 131 (258)
T ss_pred CC---CCEEEEChH----------------Hhc-----CHHHHHHHHHHhCCCcEEEEEEE
Confidence 54 566778821 122 2677888888874 35444443
No 166
>PRK06398 aldose dehydrogenase; Validated
Probab=26.03 E-value=1.7e+02 Score=28.43 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=25.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgG 107 (521)
+++||+-...-==..+|+.|.+.|++++.++-
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r 38 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVINFDI 38 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 57888888765556789999999999998753
No 167
>PRK13973 thymidylate kinase; Provisional
Probab=25.67 E-value=82 Score=30.47 Aligned_cols=81 Identities=16% Similarity=0.345 Sum_probs=48.0
Q ss_pred ccHHHHHHHHHHcCcEEEEec--h---hHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHH
Q 009955 86 KDLASLGIGLQELGYTIVSTG--G---TATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDAL 160 (521)
Q Consensus 86 ~glvelAk~L~~lGfeIiATg--G---Tak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l 160 (521)
|.+..|++.|.+.|+.++.|. | +.+.|++. ++++.-+.++|.+.. +|+--+.-+|+..+
T Consensus 18 Tq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~---------------l~~~~~~~~~~~~~~-ll~~a~r~~~~~~~ 81 (213)
T PRK13973 18 TQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHV---------------LLSGAAELYGPRMEA-LLFAAARDDHVEEV 81 (213)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHH---------------HcCCCccCCCHHHHH-HHHHHHHHHHHHHH
Confidence 445566777788888888772 1 24444441 122223456888774 44445666777653
Q ss_pred HHcCCCceeEEEEeccCcHHhh
Q 009955 161 SEHGIGTFDLVVVNLYPFYDKV 182 (521)
Q Consensus 161 ~~~~I~~IDlVVVNLYPFe~tv 182 (521)
-.--+..-++||++=|=|...+
T Consensus 82 i~~~l~~g~~Vi~DRy~~S~~a 103 (213)
T PRK13973 82 IRPALARGKIVLCDRFIDSTRA 103 (213)
T ss_pred HHHHHHCCCEEEEcchhhhHHH
Confidence 3333344589999999876543
No 168
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=25.44 E-value=45 Score=34.79 Aligned_cols=98 Identities=28% Similarity=0.386 Sum_probs=62.1
Q ss_pred EEEEecCcccHHHHHHHHHHcCcEEEEech--------hHHHHHHCCCeeEE-----eccc-------C-----CCCcCC
Q 009955 78 ALISLSDKKDLASLGIGLQELGYTIVSTGG--------TATSLENAGVSVTK-----VEQL-------T-----CFPEML 132 (521)
Q Consensus 78 aLISVsDK~glvelAk~L~~lGfeIiATgG--------Tak~L~e~GI~v~~-----Vski-------T-----GfPEil 132 (521)
+-.++-=...-.-|+..|.+.|-++..|+. .+..|.+.||+|-- .+++ . .-|+++
T Consensus 46 Ia~cLHle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get~eey~~~i~~~L~~~~~~~P~~i 125 (268)
T PF05221_consen 46 IAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGETDEEYWWCIEKALSWEDDHGPNLI 125 (268)
T ss_dssp EEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT--HHHHHHHHHHCHSESTTCE-SEE
T ss_pred EEEEEechHHHHHHHHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEeCCCCHHHHHHHHHHHhcCCCCCCccee
Confidence 333444344456689999999999986653 68899999999954 3333 2 246775
Q ss_pred ---CC-cccccc---chhhcccccC----CCCHHhHHHHHHcCCCceeEEEEec
Q 009955 133 ---DG-RVKTLH---PNIHGGILAR----RDQKHHMDALSEHGIGTFDLVVVNL 175 (521)
Q Consensus 133 ---dG-RVKTLH---PkIhgGILar----r~~~~h~~~l~~~~I~~IDlVVVNL 175 (521)
|| -+-+|| |..-.+|.+- ..--..+.+|.+.|.-++=++.||=
T Consensus 126 iDDG~Dl~~~lh~~~~~l~~~i~G~sEETTTGv~rL~am~~~g~L~~PviavND 179 (268)
T PF05221_consen 126 IDDGGDLVNLLHTKRPELLSGIIGGSEETTTGVHRLRAMEKEGKLKFPVIAVND 179 (268)
T ss_dssp EESSSHHHHHHHHHHHHHHHT-SEEEE-SHHHHHHHHHHHHTT---SEEEESTT
T ss_pred ecchHHHHHHHHHHHHhhhhheEEecccccccchhhhhhhhhcccCCCeeEecc
Confidence 44 456677 5555555543 2223578899999999999999994
No 169
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=25.44 E-value=98 Score=31.63 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=38.0
Q ss_pred hHHHHHHCCCeeEEecccCCCCcCCCCccccccch-----h-hcccccCCCCHHhHHHHHHcCCCc
Q 009955 108 TATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPN-----I-HGGILARRDQKHHMDALSEHGIGT 167 (521)
Q Consensus 108 Tak~L~e~GI~v~~VskiTGfPEildGRVKTLHPk-----I-hgGILarr~~~~h~~~l~~~~I~~ 167 (521)
+|..|.++|.+|+.++.- +-+|||+.|.+-. + .|+-..-...+.-.+-++++|++.
T Consensus 2 AA~~L~~~G~~v~vlEa~----~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 63 (419)
T TIGR03467 2 AAVELARAGARVTLFEAR----PRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEP 63 (419)
T ss_pred hHHHHHhCCCceEEEecC----CCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCch
Confidence 578999999999888762 4599999998643 1 222222233455566678888863
No 170
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=25.40 E-value=6.9e+02 Score=24.96 Aligned_cols=45 Identities=27% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEE----EEec--hhHHHHHHCCCe
Q 009955 74 ANKQALISLSDKKDLASLGIGLQELGYTI----VSTG--GTATSLENAGVS 118 (521)
Q Consensus 74 ~i~raLISVsDK~glvelAk~L~~lGfeI----iATg--GTak~L~e~GI~ 118 (521)
+++-+|+|=+......++++.|.++|+.+ +-|+ -|+.+|++.|..
T Consensus 37 G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~~~~ 87 (257)
T TIGR01458 37 SVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEKQLR 87 (257)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhcCCC
Confidence 45556666665666667777888888753 1222 345777776543
No 171
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=25.06 E-value=1.1e+02 Score=32.19 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHHc-----------CcEEEEec-hhHHHHHHCCCeeEEe-cccCCC--Cc-----CCCCccccccchhh
Q 009955 85 KKDLASLGIGLQEL-----------GYTIVSTG-GTATSLENAGVSVTKV-EQLTCF--PE-----MLDGRVKTLHPNIH 144 (521)
Q Consensus 85 K~glvelAk~L~~l-----------GfeIiATg-GTak~L~e~GI~v~~V-skiTGf--PE-----ildGRVKTLHPkIh 144 (521)
..++--|...|.+. |..++|-| +|++.|++.|+.+..+ .+.++- =+ ...|+ |-|.|. +
T Consensus 73 ~ngv~~~~~~l~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~~~~g~-~vli~~-~ 150 (381)
T PRK07239 73 GIGFRGWVEAADGWGLADELLEALSSARLLARGPKATGAIRAAGLREEWSPASESSAEVLEYLLEEGVAGK-RIAVQL-H 150 (381)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHcCCeEEEECccHHHHHHHcCCCCccCCCCCccHHHHHHHhcCCCCCC-EEEEEc-C
Confidence 55566666555443 55788885 9999999999988766 343321 01 11121 112221 1
Q ss_pred cccccCCCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCC-ChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCC
Q 009955 145 GGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGI-DFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSED 223 (521)
Q Consensus 145 gGILarr~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~-~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~D 223 (521)
||--+|...+.-.+.|+++|+.-..++ +|- ++... .. ..+++++. ...+--++.++++|.-
T Consensus 151 ~~~~~~~~~~~L~~~L~~~G~~V~~~~---vY~---~~~~~-~~~~~~~~~~~-----------l~~~~~d~v~FtS~st 212 (381)
T PRK07239 151 GATDEWEPLPEFLEALRAAGAEVVPVP---VYR---WVPPP-DPGPLDRLVDA-----------IASRGLDAVTFTSAPA 212 (381)
T ss_pred CCccccCchHHHHHHHHHCCCEEEEeC---cEE---EcCCC-ChhHHHHHHHH-----------HHcCCccEEEEcCHHH
Confidence 111111222456677888887654444 342 22110 00 01222222 2223457888888887
Q ss_pred HHHHHHHH
Q 009955 224 YPALLEFL 231 (521)
Q Consensus 224 Y~~vl~el 231 (521)
=..+++.+
T Consensus 213 v~~f~~~l 220 (381)
T PRK07239 213 VAALLERA 220 (381)
T ss_pred HHHHHHHH
Confidence 66666555
No 172
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.89 E-value=2.9e+02 Score=29.61 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEE
Q 009955 151 RDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLV 217 (521)
Q Consensus 151 r~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~V 217 (521)
|...++++.+.+.|+..|.+++-==..+-+... +.+.+++++++ ..+++.|-+.--.|.+
T Consensus 75 r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~---~~s~~~~l~~~----~~~v~~a~~~G~~v~~ 134 (378)
T PRK11858 75 RAVKSDIDASIDCGVDAVHIFIATSDIHIKHKL---KKTREEVLERM----VEAVEYAKDHGLYVSF 134 (378)
T ss_pred ccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHh---CCCHHHHHHHH----HHHHHHHHHCCCeEEE
Confidence 445778888889998776666522222222222 56889999987 3455555444444444
No 173
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.83 E-value=1.2e+02 Score=23.71 Aligned_cols=32 Identities=31% Similarity=0.266 Sum_probs=25.2
Q ss_pred CcEEEEEecCccc-HHHHHHHHHHcCcEEEEec
Q 009955 75 NKQALISLSDKKD-LASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 75 i~raLISVsDK~g-lvelAk~L~~lGfeIiATg 106 (521)
++|..|.+.|+.| |.++++.|.+.|+.|.+..
T Consensus 1 ~~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~ 33 (66)
T cd04908 1 IKQLSVFLENKPGRLAAVTEILSEAGINIRALS 33 (66)
T ss_pred CEEEEEEEcCCCChHHHHHHHHHHCCCCEEEEE
Confidence 3678888999875 5677888899999988773
No 174
>PRK08226 short chain dehydrogenase; Provisional
Probab=24.57 E-value=6.3e+02 Score=24.19 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=26.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTA 109 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTa 109 (521)
+++||.-...-==..+++.|.+.|++++.++-+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISP 40 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 5788887765445678899999999999886554
No 175
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=24.57 E-value=2.2e+02 Score=29.89 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=50.1
Q ss_pred CcEEEEEecC---cccHHHHHHHHHHcCcE-EEEechh------HHHHHHCCCeeEEecccCCCCcCCCCccccccchhh
Q 009955 75 NKQALISLSD---KKDLASLGIGLQELGYT-IVSTGGT------ATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIH 144 (521)
Q Consensus 75 i~raLISVsD---K~glvelAk~L~~lGfe-IiATgGT------ak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIh 144 (521)
+..+.++-.+ ...+.++.+.+.+.|+. -+.|.|| .+.|.+.|+....|| +||--+-.|=++.
T Consensus 63 ~~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iS--------ldg~~~e~~d~ir 134 (378)
T PRK05301 63 ALQLHFSGGEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDHIQLS--------FQDSDPELNDRLA 134 (378)
T ss_pred CcEEEEECCccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEE--------ecCCCHHHHHHHc
Confidence 3445555553 45689999999999975 3677775 567888998766665 3332233344444
Q ss_pred ccc-ccCCCCHHhHHHHHHcCCC
Q 009955 145 GGI-LARRDQKHHMDALSEHGIG 166 (521)
Q Consensus 145 gGI-Larr~~~~h~~~l~~~~I~ 166 (521)
|+- ...+ .-+.++.++++|+.
T Consensus 135 g~~g~f~~-~~~~i~~l~~~g~~ 156 (378)
T PRK05301 135 GTKGAFAK-KLAVARLVKAHGYP 156 (378)
T ss_pred CCCchHHH-HHHHHHHHHHCCCc
Confidence 432 1111 22345667888875
No 176
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.46 E-value=1.2e+02 Score=28.54 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=29.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+-....==..+++.|.+.|+.++.+..+...+++
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~ 44 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEE 44 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 468887765555567889999999999988776655543
No 177
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.33 E-value=39 Score=28.79 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=15.4
Q ss_pred EEEeCCCCHHHHHHHHh
Q 009955 216 LVVVGSEDYPALLEFLK 232 (521)
Q Consensus 216 ~Vv~dP~DY~~vl~el~ 232 (521)
.|++||+||.++.+.|.
T Consensus 6 ~viv~~~~~~~i~~rLd 22 (70)
T PF04210_consen 6 QVIVDPDDFNEIMKRLD 22 (70)
T ss_pred eeeeCHHHHHHHHHHHH
Confidence 58999999999999985
No 178
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=24.29 E-value=2e+02 Score=29.89 Aligned_cols=124 Identities=21% Similarity=0.196 Sum_probs=74.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
|.+||+-.---==...|+.|.+.|++++.++--.+.|++.--+ +-.|+++.+- |--+|.++
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~------------~~~~~~~~~~-------~DVtD~~~ 67 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADE------------IGAGAALALA-------LDVTDRAA 67 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHh------------hccCceEEEe-------eccCCHHH
Confidence 4567766543333567899999999999999888888873221 1113333332 22234333
Q ss_pred hHHHH--HHcCCCceeEEEEe--ccCcHHhhhcCCCCChhhhhhccccchHHHHH---HH-----HHCCCCEEEEeCCC
Q 009955 156 HMDAL--SEHGIGTFDLVVVN--LYPFYDKVTSAGGIDFEDGIENIDIGGPAMIR---AA-----AKNHKDVLVVVGSE 222 (521)
Q Consensus 156 h~~~l--~~~~I~~IDlVVVN--LYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiR---AA-----AKN~~~V~Vv~dP~ 222 (521)
-.+.+ -......||++|.| |||= ..+.+ .+.+|.-.-||+==-.+++ |. ++|.-+|..+.+-+
T Consensus 68 ~~~~i~~~~~~~g~iDiLvNNAGl~~g-~~~~~---~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiA 142 (246)
T COG4221 68 VEAAIEALPEEFGRIDILVNNAGLALG-DPLDE---ADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIA 142 (246)
T ss_pred HHHHHHHHHHhhCcccEEEecCCCCcC-Chhhh---CCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccc
Confidence 22222 24577899999999 7877 44442 4566666666764444443 32 46666777777655
No 179
>PRK06483 dihydromonapterin reductase; Provisional
Probab=23.93 E-value=2e+02 Score=27.14 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=25.9
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEechh
Q 009955 75 NKQALISLSDKKDLASLGIGLQELGYTIVSTGGT 108 (521)
Q Consensus 75 i~raLISVsDK~glvelAk~L~~lGfeIiATgGT 108 (521)
.+++||+..-.-==..+|+.|.+.|++++.++-.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 35 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRT 35 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence 3578888776555567889999999999887543
No 180
>PRK06953 short chain dehydrogenase; Provisional
Probab=23.68 E-value=2.5e+02 Score=26.43 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=25.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
+++||+....-==-.+++.|.+.|++++.+.-+..-+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~ 38 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAAL 38 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHH
Confidence 5677766643333568899999999999886554433
No 181
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.27 E-value=6.7e+02 Score=24.03 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.3
Q ss_pred cEEEEEecCc-ccH-HHHHHHHHHcCcEEEEec
Q 009955 76 KQALISLSDK-KDL-ASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 76 ~raLISVsDK-~gl-velAk~L~~lGfeIiATg 106 (521)
+++||+.... .+| ..+|+.|.+.|++++...
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTY 38 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 5789988765 344 458899999999999874
No 182
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=23.16 E-value=3.8e+02 Score=26.11 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=36.5
Q ss_pred HHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHH---CCCCEEE-EeCCCCHHHHHHHHhc
Q 009955 161 SEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAK---NHKDVLV-VVGSEDYPALLEFLKG 233 (521)
Q Consensus 161 ~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAK---N~~~V~V-v~dP~DY~~vl~el~~ 233 (521)
+.++.+.+|+|++|+-|+-.. .+ ..+.....+. --..++.+.+ +--.+++ +-.++++..++++++.
T Consensus 111 ~~~~~~~~D~V~S~~~~~~~g--~~-~~d~~~~~~~----~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~ 180 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAPNMSG--TP-AVDIPRAMYL----VELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS 180 (209)
T ss_pred HHhCCCCCCEEecCCCCccCC--Ch-HHHHHHHHHH----HHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh
Confidence 456778999999998776421 10 1111110000 0133444433 3444444 6788999999998853
No 183
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=23.15 E-value=69 Score=30.78 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=27.5
Q ss_pred HHCCCCEEEEeCCCCHHHHHHHHhcCCCCHHHHHHHHH
Q 009955 209 AKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAW 246 (521)
Q Consensus 209 AKN~~~V~Vv~dP~DY~~vl~el~~g~~s~~~R~~LA~ 246 (521)
-.|+..+|.=+|+++|+.+.++|+ ++|+++..
T Consensus 119 ~R~~s~~T~~vs~~~~~ki~~~i~------~fRk~i~~ 150 (171)
T PF14394_consen 119 ERDFSGLTMSVSREDYEKIKKEIR------EFRKKIIA 150 (171)
T ss_pred ccceeeeEEEeCHHHHHHHHHHHH------HHHHHHHH
Confidence 367888889999999999999996 89998863
No 184
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=23.12 E-value=37 Score=29.39 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.6
Q ss_pred EEEeCCCCHHHHHHHHh
Q 009955 216 LVVVGSEDYPALLEFLK 232 (521)
Q Consensus 216 ~Vv~dP~DY~~vl~el~ 232 (521)
+|++||+||.++++.|.
T Consensus 9 ~viv~~~d~~~i~~rLD 25 (77)
T PRK01026 9 QVVVDPKDFKEIQKRLD 25 (77)
T ss_pred eeecCHHHHHHHHHHHH
Confidence 68999999999999995
No 185
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=23.08 E-value=2e+02 Score=29.84 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCCcEEEEE-----ecCcccHHHHHHHHHHcCcEEE----EechhHHHHHHCCCeeEEe--ccc-CCC----CcCCCCcc
Q 009955 73 QANKQALIS-----LSDKKDLASLGIGLQELGYTIV----STGGTATSLENAGVSVTKV--EQL-TCF----PEMLDGRV 136 (521)
Q Consensus 73 ~~i~raLIS-----VsDK~glvelAk~L~~lGfeIi----ATgGTak~L~e~GI~v~~V--ski-TGf----PEildGRV 136 (521)
.+||-=.|. ..|-...++-|+.|.+.||+++ -..-+++.|.+.|-.+... +-+ +|. |+.+. .+
T Consensus 92 ~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~-~I 170 (248)
T cd04728 92 DWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLR-II 170 (248)
T ss_pred CeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHH-HH
Confidence 466644443 2266778888899999999998 3467899999999887744 322 111 11111 11
Q ss_pred cc-c-cchhhcccccCCCCHHhHHHHHHcCCCceeEEEEe
Q 009955 137 KT-L-HPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVN 174 (521)
Q Consensus 137 KT-L-HPkIhgGILarr~~~~h~~~l~~~~I~~IDlVVVN 174 (521)
+- . .|-|-+|=. ..++|..++-++|. |-|+||
T Consensus 171 ~e~~~vpVI~egGI---~tpeda~~AmelGA---dgVlV~ 204 (248)
T cd04728 171 IERADVPVIVDAGI---GTPSDAAQAMELGA---DAVLLN 204 (248)
T ss_pred HHhCCCcEEEeCCC---CCHHHHHHHHHcCC---CEEEEC
Confidence 11 1 244444333 35778877777765 677777
No 186
>PLN02978 pyridoxal kinase
Probab=22.79 E-value=2.5e+02 Score=29.00 Aligned_cols=88 Identities=13% Similarity=0.224 Sum_probs=53.6
Q ss_pred HHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHHhHHHHHHcCCCceeEEEEe
Q 009955 95 LQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVN 174 (521)
Q Consensus 95 L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~h~~~l~~~~I~~IDlVVVN 174 (521)
|..+||++.. +|....|..|||+.. +|..+...+.+.=++.++.+++-.+|-|.+=
T Consensus 38 l~~~g~~v~~------------lpTv~lSnhtgy~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~ai~~G 93 (308)
T PLN02978 38 LQLLGFDVDP------------INSVQFSNHTGYPTF------------KGQVLDGEQLWALIEGLEANGLLFYTHLLTG 93 (308)
T ss_pred HHHcCCeeee------------eccEeecCCCCCCCc------------eeeeCCHHHHHHHHHHHHHcCCcccCEEEec
Confidence 8899999876 677888888988532 2222221122233345577787568988887
Q ss_pred ccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCC
Q 009955 175 LYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSE 222 (521)
Q Consensus 175 LYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~ 222 (521)
+.+=.+.+.. ..++ ++.+..+...+.+|+||.
T Consensus 94 ~l~s~~~~~~-----v~~~-----------l~~~~~~~~~~~vvlDPv 125 (308)
T PLN02978 94 YIGSVSFLRT-----VLRV-----------VKKLRSVNPNLTYVCDPV 125 (308)
T ss_pred ccCCHHHHHH-----HHHH-----------HHHHHHhCCCCeEEECCc
Confidence 7665544432 1122 233333456788999997
No 187
>PRK12827 short chain dehydrogenase; Provisional
Probab=22.55 E-value=3.4e+02 Score=25.43 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=22.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEE
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVS 104 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiA 104 (521)
+++||+....-==..+|+.|.+.|++++.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~ 35 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIV 35 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 57888876543346789999999999977
No 188
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=22.51 E-value=1e+02 Score=33.14 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCcEEEEEec----C----cccHHHHHHHHHHcCcEEEEe--chh----------HHHHHHCCCeeEEecccCCCCcCCC
Q 009955 74 ANKQALISLS----D----KKDLASLGIGLQELGYTIVST--GGT----------ATSLENAGVSVTKVEQLTCFPEMLD 133 (521)
Q Consensus 74 ~i~raLISVs----D----K~glvelAk~L~~lGfeIiAT--gGT----------ak~L~e~GI~v~~VskiTGfPEild 133 (521)
+.+++|.|+- | +..+.++.+..+++|+++++- +.| .+.|++.||...++.. ||..
T Consensus 27 Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lGi~~lRlD~--Gf~~--- 101 (357)
T PF05913_consen 27 GFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELGIDGLRLDY--GFSG--- 101 (357)
T ss_dssp TEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT-SEEEESS--S-SC---
T ss_pred CCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCCEEEECC--CCCH---
Confidence 5678999988 3 355667788889999999985 444 3467788988888877 4421
Q ss_pred Cccccccch-hhcccccCCCCHHhHHHHHHcCCCceeE-EEEeccCcHHh
Q 009955 134 GRVKTLHPN-IHGGILARRDQKHHMDALSEHGIGTFDL-VVVNLYPFYDK 181 (521)
Q Consensus 134 GRVKTLHPk-IhgGILarr~~~~h~~~l~~~~I~~IDl-VVVNLYPFe~t 181 (521)
--+-.|.=. +.=.+=|-.-.++.++++.++|...=.+ .|-|+||=.+|
T Consensus 102 ~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~T 151 (357)
T PF05913_consen 102 EEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYT 151 (357)
T ss_dssp HHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-
T ss_pred HHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCC
Confidence 112222222 1111222222456777888877754444 56799998886
No 189
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=22.50 E-value=3.6e+02 Score=27.89 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=36.8
Q ss_pred CHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCE
Q 009955 153 QKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDV 215 (521)
Q Consensus 153 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V 215 (521)
+..+++...+.|+..|.+++--=..|. .. +- +.+.+|++|++ ..+++.|-+.-..|
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~-~~-n~-~~~~~e~l~~~----~~~v~~ak~~g~~v 136 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFS-QK-NI-NCSIAESLERF----EPVAEAAKQAGVRV 136 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHH-HH-Hh-CCCHHHHHHHH----HHHHHHHHHcCCEE
Confidence 678888888999988777752222222 11 22 67899999987 56777765555554
No 190
>PRK08265 short chain dehydrogenase; Provisional
Probab=22.46 E-value=1.6e+02 Score=28.59 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=28.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+-...-==..+|+.|.+.|++++.++-....++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 44 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA 44 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888887654456788999999999998865544333
No 191
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=22.46 E-value=3.4e+02 Score=27.04 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHcCcEE--EEechh-------HHHHHHCCCeeEEecccCC
Q 009955 87 DLASLGIGLQELGYTI--VSTGGT-------ATSLENAGVSVTKVEQLTC 127 (521)
Q Consensus 87 glvelAk~L~~lGfeI--iATgGT-------ak~L~e~GI~v~~VskiTG 127 (521)
|....|..|..+|.++ ++.=|. .+.|++.||++..+....+
T Consensus 49 Ga~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~ 98 (315)
T TIGR02198 49 GAANVARNIASLGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKD 98 (315)
T ss_pred HHHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCC
Confidence 4578899999998874 433222 2567889999776654433
No 192
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=22.41 E-value=7.7e+02 Score=26.28 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=51.7
Q ss_pred HhHHHHHHcCC--CceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHh
Q 009955 155 HHMDALSEHGI--GTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLK 232 (521)
Q Consensus 155 ~h~~~l~~~~I--~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~el~ 232 (521)
.-++.|.+..- ..|=+++.|+-||-. |=-.|++-|++.+..|.|.+--+|
T Consensus 126 ~y~~~l~~~~~~~~~i~~~~g~fdP~t~-------------------GH~~li~~A~~~~d~~~v~v~~~~--------- 177 (332)
T TIGR00124 126 RYCSTLPKPRTPGNKIGSIVMNANPFTN-------------------GHRYLIEQAARQCDWLHLFVVKED--------- 177 (332)
T ss_pred HHHHHHHHhccCCCcEEEEEeCcCCCch-------------------HHHHHHHHHHHHCCEEEEEEEeCC---------
Confidence 34444443222 478999999999943 445678889999999888874221
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 009955 233 GNQDDQQFRRKLAWKAFQHVA 253 (521)
Q Consensus 233 ~g~~s~~~R~~LA~KAF~~TA 253 (521)
..-++.+.|.+|..+++.+..
T Consensus 178 ~~~f~~~~R~~~v~~~~~~~~ 198 (332)
T TIGR00124 178 ASLFSYDERFALVKQGIQDLS 198 (332)
T ss_pred CCCCCHHHHHHHHHHHhcCCC
Confidence 257999999999999988764
No 193
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=22.39 E-value=3.6e+02 Score=27.25 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=53.7
Q ss_pred CcccHHHHHHHHHHcCcEEEEechhH---------HHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCH
Q 009955 84 DKKDLASLGIGLQELGYTIVSTGGTA---------TSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQK 154 (521)
Q Consensus 84 DK~glvelAk~L~~lGfeIiATgGTa---------k~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~ 154 (521)
....+.+|.+.|.+.|++.+++|.=. +..++.|+ +-+.| |..++.+
T Consensus 70 ~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl-------------------~~~~P------LW~~~~~ 124 (223)
T TIGR00290 70 EEDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGL-------------------KSFAP------LWHRDPE 124 (223)
T ss_pred ccHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCC-------------------EEecc------ccCCCHH
Confidence 35678888899999999999999854 33444444 44455 5678889
Q ss_pred HhHHHHHHcCCCceeEEEEeccCcHH
Q 009955 155 HHMDALSEHGIGTFDLVVVNLYPFYD 180 (521)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNLYPFe~ 180 (521)
+.+++|-++|++.| +|.||-|.+.+
T Consensus 125 ~ll~e~i~~G~~ai-Iv~v~a~gL~~ 149 (223)
T TIGR00290 125 KLMEEFVEEKFEAR-IIAVAAEGLDE 149 (223)
T ss_pred HHHHHHHHcCCeEE-EEEEecCCCCh
Confidence 99999999999854 88899987643
No 194
>PLN02257 phosphoribosylamine--glycine ligase
Probab=22.27 E-value=34 Score=37.27 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=67.7
Q ss_pred EEecCcccHHHHHHHHHH----cCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCCHH
Q 009955 80 ISLSDKKDLASLGIGLQE----LGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (521)
Q Consensus 80 ISVsDK~glvelAk~L~~----lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~~~ 155 (521)
++..|.+.+++||+...- -|.|.--..|.++.|++.|+++ ..|...+--|.+ |...
T Consensus 46 ~~~~d~~~l~~~a~~~~id~vvvg~E~~lv~~~~d~l~~~Gi~~-------------------~Gps~~aa~l~~-dK~~ 105 (434)
T PLN02257 46 LDISDSAAVISFCRKWGVGLVVVGPEAPLVAGLADDLVKAGIPT-------------------FGPSAEAAALEG-SKNF 105 (434)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHCCCCE-------------------ECChHHHHHHHc-CHHH
Confidence 466788899999887432 2333333347788888888853 233333333432 3334
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcc-ccchHHHHHHHHHCC--CCEEEEeCCCCHHHHHHHH
Q 009955 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENI-DIGGPAMIRAAAKNH--KDVLVVVGSEDYPALLEFL 231 (521)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnI-DIGGpsmiRAAAKN~--~~V~Vv~dP~DY~~vl~el 231 (521)
-.+-|+++||+...-.++. +.+++.+-+ .+|.|-+|.+. .-+ +-|.++.+++|....++++
T Consensus 106 ~K~~l~~~GIptp~~~~~~--------------~~~e~~~~~~~~g~PvVVKp~-~~~~GkGV~iv~~~~el~~a~~~~ 169 (434)
T PLN02257 106 MKDLCDKYKIPTAKYETFT--------------DPAAAKKYIKEQGAPIVVKAD-GLAAGKGVVVAMTLEEAYEAVDSM 169 (434)
T ss_pred HHHHHHHcCCCCCCeEEeC--------------CHHHHHHHHHHcCCCEEEEcC-CCCCCCCEEEECCHHHHHHHHHHH
Confidence 4456899999977654431 122332222 35778887776 222 4677777777655554443
No 195
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.25 E-value=4.4e+02 Score=26.04 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=26.2
Q ss_pred cEEEEEecCc-ccH-HHHHHHHHHcCcEEEEech
Q 009955 76 KQALISLSDK-KDL-ASLGIGLQELGYTIVSTGG 107 (521)
Q Consensus 76 ~raLISVsDK-~gl-velAk~L~~lGfeIiATgG 107 (521)
+++||+-... .|| ..+|+.|.+.|+.++-+.-
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEec
Confidence 5789999876 577 5789999999999987643
No 196
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=22.21 E-value=1.8e+02 Score=29.69 Aligned_cols=121 Identities=20% Similarity=0.201 Sum_probs=67.8
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCC
Q 009955 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (521)
Q Consensus 74 ~i~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~ 153 (521)
.-+.|||+-+.+-==..+|..|.+.|-+++-|+-+.+.|++.=... .-+|++ +++|- ++.++-.+
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~----~~~~~~---~~~~~--------~~~~Dv~~ 71 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQEL----GGLGYT---GGKVL--------AIVCDVSK 71 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----HhcCCC---CCeeE--------EEECcCCC
Confidence 3457888888765557899999999999999999888766511100 002221 22222 33344444
Q ss_pred HHhHHHHH----HcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc---chHHHHHHHHH
Q 009955 154 KHHMDALS----EHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI---GGPAMIRAAAK 210 (521)
Q Consensus 154 ~~h~~~l~----~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI---GGpsmiRAAAK 210 (521)
+++++++. +.=-+.||++|.|-..=...-.-. +.+.|+-=..++| |..-+++.+|+
T Consensus 72 ~~~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~-~~s~e~~d~~~~~Nl~G~~~~~~~~a~ 134 (270)
T KOG0725|consen 72 EVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSIL-DLSEEVFDKIMATNLRGSAFCLKQAAR 134 (270)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChh-hCCHHHHHHHHhhhchhHHHHHHHHHH
Confidence 55544433 222577999999976543221111 3344433333344 44666666654
No 197
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.16 E-value=3.7e+02 Score=25.18 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=23.9
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEe
Q 009955 75 NKQALISLSDKKDLASLGIGLQELGYTIVST 105 (521)
Q Consensus 75 i~raLISVsDK~glvelAk~L~~lGfeIiAT 105 (521)
.+++||.-....=-..+++.|.+.|++++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3578888775444467889999999999887
No 198
>PRK06720 hypothetical protein; Provisional
Probab=21.93 E-value=2.6e+02 Score=26.33 Aligned_cols=37 Identities=16% Similarity=0.028 Sum_probs=26.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L 112 (521)
+.+||+-.-.-==..+|+.|.+.|++++-++-+...+
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~ 53 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESG 53 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 4678877755445678899999999999887544433
No 199
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=21.80 E-value=44 Score=28.50 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=15.6
Q ss_pred EEEeCCCCHHHHHHHHh
Q 009955 216 LVVVGSEDYPALLEFLK 232 (521)
Q Consensus 216 ~Vv~dP~DY~~vl~el~ 232 (521)
+|++||+||.++++.|+
T Consensus 6 ~v~v~~~d~~~i~~rLd 22 (70)
T TIGR01149 6 AVFVEPDEFNEVMKRLD 22 (70)
T ss_pred eeecCHHHHHHHHHHHH
Confidence 68999999999999985
No 200
>PRK02399 hypothetical protein; Provisional
Probab=21.74 E-value=3.1e+02 Score=30.44 Aligned_cols=93 Identities=24% Similarity=0.344 Sum_probs=62.7
Q ss_pred CcEEEEEec--CcccHHHHHHHHHHcCcEEEE-----ech-hHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcc
Q 009955 75 NKQALISLS--DKKDLASLGIGLQELGYTIVS-----TGG-TATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGG 146 (521)
Q Consensus 75 i~raLISVs--DK~glvelAk~L~~lGfeIiA-----TgG-Tak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgG 146 (521)
...+-+|.. -...+..+-+.|.+.|||.+. +|| +.+.|-+.|. +.-|-|+|=. |+- -.++||
T Consensus 186 kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHATG~GGraME~Li~~G~-~~gVlDlTtt-Ev~--------d~l~GG 255 (406)
T PRK02399 186 KPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHATGTGGRAMEKLIDSGL-IAGVLDLTTT-EVC--------DELFGG 255 (406)
T ss_pred CceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHHcCC-ceEEEEcchH-HHH--------HHHhCc
Confidence 334555554 346677777889999999983 466 6778888887 4455555411 333 368899
Q ss_pred cccCCCCHHhHHHHHHcCCCce----eEEEEeccCcH
Q 009955 147 ILARRDQKHHMDALSEHGIGTF----DLVVVNLYPFY 179 (521)
Q Consensus 147 ILarr~~~~h~~~l~~~~I~~I----DlVVVNLYPFe 179 (521)
+|+- -|+.+....+.||+.| =|=.|||=|.+
T Consensus 256 v~sa--gp~Rl~Aa~~~gIP~Vvs~GalDmVnFg~~~ 290 (406)
T PRK02399 256 VLAA--GPDRLEAAARTGIPQVVSPGALDMVNFGAPD 290 (406)
T ss_pred CccC--CccHHHHHHHcCCCEEecCCceeeeecCCcc
Confidence 9984 4678899999999987 22233776653
No 201
>PRK12742 oxidoreductase; Provisional
Probab=21.32 E-value=6.8e+02 Score=23.40 Aligned_cols=31 Identities=16% Similarity=-0.025 Sum_probs=23.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATg 106 (521)
+++||.....-==..+|+.|.+.|++++.+.
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~ 37 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTY 37 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 5788887644444668899999999998764
No 202
>PLN02854 3-ketoacyl-CoA synthase
Probab=21.23 E-value=77 Score=35.87 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=35.0
Q ss_pred HHHHcCCCc--eeEEEEeccCcHH------hhhcCCCCChhhhhhccccchH------HHHH---HHH--HCCCCEEEEe
Q 009955 159 ALSEHGIGT--FDLVVVNLYPFYD------KVTSAGGIDFEDGIENIDIGGP------AMIR---AAA--KNHKDVLVVV 219 (521)
Q Consensus 159 ~l~~~~I~~--IDlVVVNLYPFe~------tv~~~~~~~~ee~IEnIDIGGp------smiR---AAA--KN~~~V~Vv~ 219 (521)
.+++.||.| ||+||||-.||.- .|.+ ...+..-|...|++|. .-|+ .-. ..+++|+||+
T Consensus 199 lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n--~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVs 276 (521)
T PLN02854 199 LFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVN--HYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVS 276 (521)
T ss_pred HHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHH--HhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 367888875 9999999888842 1222 1223323556788752 2222 222 3467888876
Q ss_pred C
Q 009955 220 G 220 (521)
Q Consensus 220 d 220 (521)
-
T Consensus 277 t 277 (521)
T PLN02854 277 T 277 (521)
T ss_pred E
Confidence 3
No 203
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=21.21 E-value=1.9e+02 Score=23.63 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=23.5
Q ss_pred cccHHHHHHHHHHcCcEE-EEechhH----HHHHHCCC
Q 009955 85 KKDLASLGIGLQELGYTI-VSTGGTA----TSLENAGV 117 (521)
Q Consensus 85 K~glvelAk~L~~lGfeI-iATgGTa----k~L~e~GI 117 (521)
-.++.++.+.|.+.|+.| +.|+++. ..++..|+
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 467889999999999984 4555543 44556776
No 204
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=21.17 E-value=4.8e+02 Score=24.41 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=28.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~e 114 (521)
+++||+....-==..+++.|.+.|+.++.+......+++
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~ 45 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEA 45 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 578888765433456889999999999887665555543
No 205
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.79 E-value=1.2e+02 Score=33.74 Aligned_cols=56 Identities=23% Similarity=0.354 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHHcCcE---EEEechhH--------HHHHHCCCeeEEeccc------CCCCcCCCCccccccc
Q 009955 85 KKDLASLGIGLQELGYT---IVSTGGTA--------TSLENAGVSVTKVEQL------TCFPEMLDGRVKTLHP 141 (521)
Q Consensus 85 K~glvelAk~L~~lGfe---IiATgGTa--------k~L~e~GI~v~~Vski------TGfPEildGRVKTLHP 141 (521)
|.--.++|+.|.+-|++ +.||.||. +.|+++|||+..+-.+ -|.|-|+-| |-..||
T Consensus 322 ~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~~vGanRiv~~-~~i~~P 394 (431)
T TIGR01917 322 KQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIALTVGANRIIPA-IAIPHP 394 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHHhcCCCceecC-CCCCCC
Confidence 44567899999998876 56788884 7899999999877665 466666443 334666
No 206
>PLN02377 3-ketoacyl-CoA synthase
Probab=20.74 E-value=1.4e+02 Score=33.69 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=34.9
Q ss_pred HHHHcCCCc--eeEEEEeccCcHH------hhhcCCCCChhhhhhccccch------H---HHHHHHHHC--CCCEEEEe
Q 009955 159 ALSEHGIGT--FDLVVVNLYPFYD------KVTSAGGIDFEDGIENIDIGG------P---AMIRAAAKN--HKDVLVVV 219 (521)
Q Consensus 159 ~l~~~~I~~--IDlVVVNLYPFe~------tv~~~~~~~~ee~IEnIDIGG------p---smiRAAAKN--~~~V~Vv~ 219 (521)
.+++.|+.| ||+||||--||.- .|.+ ...+..-+...|++| . .+.+.-.++ .++|+||+
T Consensus 183 aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~--~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVs 260 (502)
T PLN02377 183 LFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVN--KYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVS 260 (502)
T ss_pred HHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHH--HhCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 367888876 9999999888831 2222 223332346789986 2 223333444 46677665
No 207
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=20.73 E-value=2.5e+02 Score=31.56 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=50.0
Q ss_pred cccHHHHHHHHHHcCcEEEEe----chhHHHHHHCCCeeEEecccCCC-Cc-CCCCccccccchhhcccccCCCCHHhHH
Q 009955 85 KKDLASLGIGLQELGYTIVST----GGTATSLENAGVSVTKVEQLTCF-PE-MLDGRVKTLHPNIHGGILARRDQKHHMD 158 (521)
Q Consensus 85 K~glvelAk~L~~lGfeIiAT----gGTak~L~e~GI~v~~VskiTGf-PE-ildGRVKTLHPkIhgGILarr~~~~h~~ 158 (521)
=.|+--+|.-|+++||++-.+ .=+-+.|++.|+++- .|+ |+ +.++-+ -|++--.. ++||+ +.
T Consensus 17 G~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~-----~gh~~~ni~~~~~-----VV~s~Ai~-~~NpE-i~ 84 (459)
T COG0773 17 GIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIF-----IGHDAENILDADV-----VVVSNAIK-EDNPE-IV 84 (459)
T ss_pred cccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEe-----CCCCHHHcCCCce-----EEEecccC-CCCHH-HH
Confidence 367889999999999999765 236788999999763 354 44 666666 44444444 67776 45
Q ss_pred HHHHcCCC
Q 009955 159 ALSEHGIG 166 (521)
Q Consensus 159 ~l~~~~I~ 166 (521)
..+++||+
T Consensus 85 ~A~e~~ip 92 (459)
T COG0773 85 AALERGIP 92 (459)
T ss_pred HHHHcCCC
Confidence 67888887
No 208
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=20.47 E-value=7e+02 Score=25.24 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=46.3
Q ss_pred EEEecC-----cccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCcCCCCccccccchhhcccccCCCC
Q 009955 79 LISLSD-----KKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (521)
Q Consensus 79 LISVsD-----K~glvelAk~L~~lGfeIiATgGTak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhgGILarr~~ 153 (521)
++|+.| +-++-....-|..+|+++.. ++....+.-|||+...+. .+.+.+ .
T Consensus 18 vl~i~~~~~~G~v~~~~a~~~l~~~G~~v~~------------lpTv~~s~~~~y~~~~~~---~~~~~~---------i 73 (281)
T PRK08176 18 IVAVQSQVVYGSVGNSIAVPAIKANGLRVFA------------VPTVLLSNTPHYPTFYGG---AIPDEW---------F 73 (281)
T ss_pred EEEEeceeeecccccHHHHHHHHHcCCcccc------------cceEeecCCCCCCCcCCe---eCCHHH---------H
Confidence 556654 77777777778888877654 566677777888666532 111222 2
Q ss_pred HHhHHHHHHcC-CCceeEEEEeccC
Q 009955 154 KHHMDALSEHG-IGTFDLVVVNLYP 177 (521)
Q Consensus 154 ~~h~~~l~~~~-I~~IDlVVVNLYP 177 (521)
++-++.+.+.+ +.++|.|.+=+-+
T Consensus 74 ~~~l~~~~~~~~l~~~d~i~~G~l~ 98 (281)
T PRK08176 74 SGYLRALQERDALRQLRAVTTGYMG 98 (281)
T ss_pred HHHHHHHHhcCccccCCEEEECCCC
Confidence 23334455555 3589999986655
No 209
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.47 E-value=84 Score=30.89 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCcEEEEechhHHHHHHCCC
Q 009955 88 LASLGIGLQELGYTIVSTGGTATSLENAGV 117 (521)
Q Consensus 88 lvelAk~L~~lGfeIiATgGTak~L~e~GI 117 (521)
...+++.|.+.||+.+..-+.+.+|+..|+
T Consensus 139 S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 139 SKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred HHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 567899999999999999999999999997
No 210
>PLN03194 putative disease resistance protein; Provisional
Probab=20.47 E-value=1.6e+02 Score=29.35 Aligned_cols=38 Identities=29% Similarity=0.170 Sum_probs=24.4
Q ss_pred CCCCCCCCCcEEEEEec--C-ccc-HHHHHHHHHHcCcEEEE
Q 009955 67 QSSSSSQANKQALISLS--D-KKD-LASLGIGLQELGYTIVS 104 (521)
Q Consensus 67 ~~~~~~~~i~raLISVs--D-K~g-lvelAk~L~~lGfeIiA 104 (521)
|++||+.+.--||||.+ | +.+ +-.|.+.|...|+..+=
T Consensus 18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~ 59 (187)
T PLN03194 18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFL 59 (187)
T ss_pred ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEE
Confidence 34556667778999998 5 234 34466666666666543
No 211
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=20.44 E-value=1.8e+02 Score=31.08 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=42.0
Q ss_pred CCceeecCCCCCHhHHHHHHHHHHHHhhhc-ceEEEEEeCCeEEEecCCC
Q 009955 471 IQFKVVSEKKPQESELHDAEFAWLCVKHVK-SNAIVIAKVGTSILMKSDM 519 (521)
Q Consensus 471 ~~~~vVT~r~Pt~~e~~dL~FAwkvvK~VK-SNAIV~ak~~~tvGIGaGQ 519 (521)
..++....+.++---+.|+.-||++++-.. ..|.|++|.+.--|++.|.
T Consensus 104 ~~~~qL~GKeLSyNN~lD~daA~~lv~ef~~~pa~vivKH~nPCGvA~~~ 153 (315)
T PF01808_consen 104 APAEQLQGKELSYNNLLDADAAWRLVREFDDEPACVIVKHNNPCGVAIGD 153 (315)
T ss_dssp HSEEEEESS---HHHHHHHHHHHHHHHCCCHSCEEEEEETTEEEEEEEES
T ss_pred cchHHhcCcCcccCCchhHHHHHHHHHHcCCCCeEEEEecCccceeEecC
Confidence 367888889999999999999999999999 9999999999999988774
No 212
>PRK06949 short chain dehydrogenase; Provisional
Probab=20.26 E-value=2.3e+02 Score=26.95 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=28.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 009955 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (521)
Q Consensus 76 ~raLISVsDK~glvelAk~L~~lGfeIiATgGTak~L~ 113 (521)
+++||+-...-==..+++.|.+.|++++.+.-..+.++
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~ 47 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLK 47 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 67888876554456788999999999999876555444
No 213
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=20.08 E-value=5.1e+02 Score=24.02 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHcCcEEE-EechhHHH----HHHCCC
Q 009955 85 KKDLASLGIGLQELGYTIV-STGGTATS----LENAGV 117 (521)
Q Consensus 85 K~glvelAk~L~~lGfeIi-ATgGTak~----L~e~GI 117 (521)
-+++.++.+.|++.|+.+. .|+|+... |+..|+
T Consensus 94 ~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl 131 (198)
T TIGR01428 94 HPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGL 131 (198)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCC
Confidence 4789999999999999865 66676654 455665
Done!