RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009955
(521 letters)
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase,
hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis}
PDB: 4a1o_A*
Length = 523
Score = 693 bits (1791), Expect = 0.0
Identities = 190/445 (42%), Positives = 255/445 (57%), Gaps = 24/445 (5%)
Query: 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGR 135
++ALIS+ DK L L GL G I+STG TA ++ + G+ VT VEQLT FPE+LDGR
Sbjct: 11 RRALISVYDKTGLVDLAQGLSAAGVEIISTGSTAKTIADTGIPVTPVEQLTGFPEVLDGR 70
Query: 136 VKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE 195
VKTLHP +H G+LA + H AL + GI F+LVVVNLYPF V G +D +E
Sbjct: 71 VKTLHPRVHAGLLADLRKSEHAAALEQLGIEAFELVVVNLYPFSQTV--ESGASVDDCVE 128
Query: 196 NIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASY 255
IDIGGPAM+RAAAKNH VV Y +L L+ R++LA AFQH+A Y
Sbjct: 129 QIDIGGPAMVRAAAKNHPSAAVVTDPLGYHGVLAALRAGGFTLAERKRLASLAFQHIAEY 188
Query: 256 DSAVSEWLWKQIAEED---KFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGG 312
D AV+ W+ + +A E FP F + LRYGENPHQ+AA Y D + G
Sbjct: 189 DIAVASWMQQTLAPEHPVAAFPQWFGRSWRRVAMLRYGENPHQQAALYGDPT----AWPG 244
Query: 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVA-SRDDILEAYKLA 371
+A A Q HGK+MSYNN+ DADAAW + + I+KH NPCG+A S + +A++ A
Sbjct: 245 LAQAEQLHGKDMSYNNFTDADAAWRAAFDHEQTCVAIIKHANPCGIAISSVSVADAHRKA 304
Query: 372 VKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRG 431
+ DP+SA+GG++A N EV +A+ + + +F E++VAP Y L++L
Sbjct: 305 HECDPLSAYGGVIAANTEVSVEMAEYV----------STIFTEVIVAPGYAPGALDVLAR 354
Query: 432 KSKNLRILETKKNKKGKLSLRQVGGGWLAQDSDDLTPEDI---QFKVVSEKKPQESELHD 488
K KN+R+L + G LR + GG L Q SD L + + + + L D
Sbjct: 355 K-KNIRVLVAAEPLAGGSELRPISGGLLIQQSDQLDAHGDNPANWTLATGSPADPATLTD 413
Query: 489 AEFAWLCVKHVKSNAIVIAKVGTSI 513
FAW + VKSNAIVIA G ++
Sbjct: 414 LVFAWRACRAVKSNAIVIAADGATV 438
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Length = 534
Score = 680 bits (1758), Expect = 0.0
Identities = 176/468 (37%), Positives = 265/468 (56%), Gaps = 29/468 (6%)
Query: 53 MAHSHTVSVPTNQPQSSSSSQAN-KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATS 111
M H H S + + Q+N +AL+S+SDK+ + G L+ LG+ I+STGGT
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAMRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKL 60
Query: 112 LENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLV 171
L+ G+ V +V T PE+ +GRVKTLHP IHGGIL +R ++H+ E+ I DLV
Sbjct: 61 LKENGIKVIEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLV 120
Query: 172 VVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231
VNLYPF DF++ IENIDIGGPAMIR+AAKN+KDV+V+ DY ++E L
Sbjct: 121 CVNLYPFKKTT--IMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETL 178
Query: 232 KGNQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGE 291
K Q+D+ FR L KA++H A+YD+ ++ ++ ++ F S + + +YGE
Sbjct: 179 KKGQNDENFRLNLMIKAYEHTANYDAYIANYMNERFNGG--FGASKFIVGQKVFDTKYGE 236
Query: 292 NPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEF-KNPTCVIV 350
NPHQK A Y +A A G E S+NN D +AA N S F K P IV
Sbjct: 237 NPHQKGALYEF------DAFFSANFKALKG-EASFNNLTDINAALNLASSFDKAPAIAIV 289
Query: 351 KHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETR 410
KH NPCG A +++++++Y A+K D VSA+GG+VA N +DEALA ++ E
Sbjct: 290 KHGNPCGFAIKENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINE---------- 339
Query: 411 MFYEIVVAPSYTEEGLEILRGKSKNLRILETKK----NKKGKLSLRQVGGGWLAQDSDDL 466
++ E+++A + E+ L + GK K ++I + K + + GG++ Q+SD++
Sbjct: 340 IYVEVIIAANVDEKALAVFEGK-KRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEV 398
Query: 467 TPEDI-QFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKVGTSI 513
+++ K++S+++ + EL D E A KSN +V K G +
Sbjct: 399 GEDELKNAKLMSQREASKEELKDLEIAMKIAAFTKSNNVVYVKNGAMV 446
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4;
1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Length = 464
Score = 605 bits (1563), Expect = 0.0
Identities = 143/439 (32%), Positives = 212/439 (48%), Gaps = 74/439 (16%)
Query: 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGR 135
K+ L+SL +K+ + L E G+ I ++ GTA L++ G+ V +T F +L G
Sbjct: 14 KRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGL 73
Query: 136 VKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE 195
VKTLHP I GIL +D+V V+LYP
Sbjct: 74 VKTLHPEIFAGILGPEP--------------RWDVVFVDLYP----------------PP 103
Query: 196 NIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASY 255
+IDIGG A++RAAAKN K V E +E D++ R+ LA F + Y
Sbjct: 104 DIDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEID-----DEETRKYLAGMTFAFTSVY 158
Query: 256 DSAVSEWLWKQIAEEDKFPPSFTVPLELKS-SLRYGENPHQKAAFYVDKSLAEVNAGGIA 314
DS + F ++ + + LRYGENPH+KA Y G A
Sbjct: 159 DSIRANQ----------FVEGISLAFKREDLQLRYGENPHEKAFVY----------GKPA 198
Query: 315 TAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKA 374
I H GK +S+NN LDA+ AW V+VKH +PCG A +D +E K A++A
Sbjct: 199 FEILHEGKTISFNNILDAENAWFMAKNLPRMGAVVVKHQSPCGAAIGEDKVEIVKKAIEA 258
Query: 375 DPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSK 434
D S+FGGI+A N E+DE +AK L++ + E++VAPS+T+E +E+L K
Sbjct: 259 DDESSFGGILAVNFEMDEEVAKSLKK-----------YLEVIVAPSFTQEAIEVL--SKK 305
Query: 435 NLRILETKKNKKGKLSLRQVGGGWLAQDSDDLTPEDIQFKVVSEKKPQESELHDAEFAWL 494
+R+L+ + + G + + + F++V + E EL D EFA+
Sbjct: 306 KVRLLKPG--DYASWAGKMAFGSLVLSE-RKYPEGN--FELVVGEPLSEKELEDLEFAYR 360
Query: 495 CVKHVKSNAIVIAKVGTSI 513
V+ KSNA++IAK G ++
Sbjct: 361 VVEGAKSNAVLIAKDGVTV 379
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional
domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A
{Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A*
2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A*
1p4r_A* 1pl0_A*
Length = 593
Score = 594 bits (1534), Expect = 0.0
Identities = 151/470 (32%), Positives = 217/470 (46%), Gaps = 64/470 (13%)
Query: 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGR 135
+ AL+S+S+K L L LG ++++GGTAT+L +AG+ V V LT FPEML GR
Sbjct: 6 QLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGR 65
Query: 136 VKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE 195
VKTLHP +H GILAR + +++ +VV NLYPF V+S G+ + +E
Sbjct: 66 VKTLHPAVHAGILARNIPE-DNADMNKQDFSLVRVVVCNLYPFVKTVSSP-GVTVPEAVE 123
Query: 196 NIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQD---DQQFRRKLAWKAFQHV 252
IDIGG A++RAAAKNH V VV DY ++ + + ++D + RR LA KAF H
Sbjct: 124 KIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHT 183
Query: 253 ASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGG 312
A YD+A+S++ K+ ++ + LRYG NPHQ A
Sbjct: 184 AQYDAAISDYFRKEYSKGVS-----------QLPLRYGMNPHQSPAQLYT--------TR 224
Query: 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFK----NPTCVIVKHTNPCGVA--------- 359
+ + N DA AW V E K P KH +P G A
Sbjct: 225 PKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSEEE 284
Query: 360 -----------SRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGE 408
+ + AY + AD +S+FG +A + D AK +
Sbjct: 285 AQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKII---------- 334
Query: 409 TRMFYEIVVAPSYTEEGLEILRGKSKNLRILETK---KNKKGKLSLRQVGGGWLAQDSDD 465
+R + VVAP Y EE L+IL K KN + + +R + G L Q ++
Sbjct: 335 SREVSDGVVAPGYEEEALKILSKK-KNGGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNN 393
Query: 466 LTPEDIQFKVVSEKKP--QESELHDAEFAWLCVKHVKSNAIVIAKVGTSI 513
+ FK + K ES + D A + VK+ +SN++ AK G I
Sbjct: 394 AVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVI 443
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 3e-10
Identities = 66/416 (15%), Positives = 122/416 (29%), Gaps = 131/416 (31%)
Query: 155 HHMD-ALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHK 213
HHMD EH D++ V F D D +D +++ M ++ +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDN------FDCKD-VQD-------MPKSILSKEE 50
Query: 214 -DVLVVVGSEDYPALLEF----LKGNQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIA 268
D +++ L F K + Q+F V ++L I
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-----------VEEVLRINYKFLMSPIK 99
Query: 269 EEDKFPPSFTVPLELKSSLRYGEN--------PHQKAAFYVDKSLAEVN-AGGIATAIQH 319
E + P T + Y +N + + ++L E+ A +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---- 155
Query: 320 HGKEM-----SYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGV--------ASRDDILE 366
G + + ++ D +K V+ + S + +LE
Sbjct: 156 DG--VLGSGKT---WVALDV----CLSYK------VQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 367 AY-KLAVKADPVSAFGGIVAFNVEVD-EALAKELREYRSPTDGETRMFYEIVVAPSYTEE 424
KL + DP + N+++ ++ ELR R+ Y E
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR----------RLLKS----KPY-EN 245
Query: 425 GLEILRG-KSKNL--------RILETKKNK----------KGKLSLRQVGGG-------- 457
L +L ++ +IL T + K +SL
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 458 ----WLAQDSDDLTPEDIQ-----FKVVSEKKPQESELHDAEFAWLCVKHVKSNAI 504
+L DL E + +++E + D W KHV + +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAE------SIRDGLATWDNWKHVNCDKL 355
Score = 57.9 bits (139), Expect = 6e-09
Identities = 67/475 (14%), Positives = 131/475 (27%), Gaps = 180/475 (37%)
Query: 55 HSHTVSVPTNQPQSSSS----SQANKQALISLSD---KKDLASLGIGLQELGYTIVST-- 105
HS + + + Q+ S+ + L+ L + K + + + +++T
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----ILLTTRF 274
Query: 106 --------GGTAT--SLENAGVSVTKVEQLTCFPEMLDGRVKTL-------HPNIHGGIL 148
T T SL++ +++T E + + LD R + L +P I
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 149 AR-RDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRA 207
RD D + DK+T+ E + ++ PA R
Sbjct: 335 ESIRDGLATWDNW--------------KHVNCDKLTTI----IESSLNVLE---PAEYRK 373
Query: 208 AAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQI 267
+ L F A + + +W +
Sbjct: 374 M---------------FDRLSVF----PPS---------------AHIPTILLSLIWFDV 399
Query: 268 AEEDKFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYN 327
+ D + + + L SL E KE + +
Sbjct: 400 IKSD--------VMVVVNKL-------------HKYSLVE-----------KQPKESTIS 427
Query: 328 NY-LDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAF 386
+ + +E+ H I++ Y + D
Sbjct: 428 IPSIYLELKVKLENEYA-------LH---------RSIVDHYNIPKTFDS---------- 461
Query: 387 NVEVDEALAKELREYRSPTDGETRMFYEIVV----APSYTEEGLEILRGKSKNLRILETK 442
D+ + L +Y FY + + E + + R + R LE K
Sbjct: 462 ----DDLIPPYLDQY----------FYSHIGHHLKNIEHPER-MTLFRMVFLDFRFLEQK 506
Query: 443 KNKKGKLSLRQVGGGWLAQDS--DDLTPEDIQF--KVVSEKKPQESELHDA--EF 491
+R W A S + L ++F + + P+ L +A +F
Sbjct: 507 --------IRHDSTAWNASGSILNTLQ--QLKFYKPYICDNDPKYERLVNAILDF 551
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 6e-09
Identities = 95/597 (15%), Positives = 165/597 (27%), Gaps = 205/597 (34%)
Query: 38 VHTTSLRFSYSPIRAMAH---SHTVSVPTNQPQSSSSSQANKQALISL--------SDKK 86
+ S R P+ ++H H + VPT +SQ +Q L +D +
Sbjct: 1 MDAYSTR----PL-TLSHGSLEHVLLVPTA--SFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 87 DLASLGIGLQELGYTIVSTGGTATSLENAGVS----VTKVEQLTCF-PEMLDGRVKTLHP 141
+ + LGY ++ +E + V V + LT F L+G
Sbjct: 54 PTTPAELVGKFLGY-------VSSLVEPSKVGQFDQVLNL-CLTEFENCYLEGN------ 99
Query: 142 NIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGG 201
+IH LA + ++ + ++ N Y F+
Sbjct: 100 DIHA--LA-----AKLLQENDTTLVKTKELIKN----YITARIMAKRPFDKKSN------ 142
Query: 202 PAMIRAAAKNHKDVLVVVG----SEDY-----------------------PALLEFLKGN 234
A+ RA + + ++ + G ++DY L E ++
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 235 QDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPS-------FTVPL-ELKSS 286
D + K F + + EWL P + PL +
Sbjct: 203 LDAE--------KVFTQG--LN--ILEWL----ENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 287 LRY-------GENP-----HQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADA 334
Y G P + K A + L V A IA S+ ++ +
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGL--VTAVAIAET-------DSWESFFVSVR 297
Query: 335 A---------WNCVSEFKN----PTCVIVKHTNPCGVASRDDILEAYKLAVKA---DPVS 378
C + N P+ + N GV S L++ + V
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-------PMLSISNLTQEQVQ 350
Query: 379 AFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVA--PSYTEEGLEILRGKSKNL 436
+ + N + E+ + VV+ P L G + L
Sbjct: 351 DY--VNKTNSHLPAGKQVEISLVNGA-----KNL---VVSGPPQS-------LYGLNLTL 393
Query: 437 RILETKKNK---KGKLSLRQVGGGW--L-------------AQD--SDDLTPEDIQFKVV 476
R + + S R++ L A D + DL ++ F
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 477 SEKKP------------QESELHDAEFAWLCVKHVKSNAIVIAKVGTSILMKSDMFG 521
+ P + + + VK K T IL D FG
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA-THIL---D-FG 505
Score = 52.7 bits (126), Expect = 3e-07
Identities = 92/583 (15%), Positives = 160/583 (27%), Gaps = 222/583 (38%)
Query: 7 AAPASIAAQPPYSNILYTLLNKKRIPIFCVR------VHT----------TSLRFSYSPI 50
++ + + +L L + F +H T+L + I
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTE-----FENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 51 RAMAHS-HTVSVPTNQPQSSSSSQANKQALISLSDKKDLASL-----GIG--------LQ 96
+ + P ++ +S AL + + A L G G L+
Sbjct: 124 KNYITARIMAKRPFDKKSNS--------ALFRAVGEGN-AQLVAIFGGQGNTDDYFEELR 174
Query: 97 ELGYT---------IVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGI 147
+L Y I + T + L + KV F + L+ +
Sbjct: 175 DL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-----FTQGLN--ILEW-------- 218
Query: 148 LARRDQKHHMDAL-----SEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGP 202
L D L S IG L Y G + +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLA------HYVVTAKLLGFTPGELRSYL----- 267
Query: 203 AMIRAAAKNHKDVL--VVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASYDSAVS 260
+ A + + ++ V + D +W++F + S
Sbjct: 268 ---KGATGHSQGLVTAVAIAETD---------------------SWESF-----FVSVRK 298
Query: 261 --EWL-WKQIAEEDKFPPSFTVPLELKSSLRYGE----------NPHQKAAFYVDKSLAE 307
L + + + +P + P L+ SL E N Q+ V + +
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ---VQDYVNK 355
Query: 308 VNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNP----CGVASRDD 363
N+ +L A +S ++V + P G+
Sbjct: 356 TNS------------------HLPAGKQVE-ISLVNGAKNLVV--SGPPQSLYGLNLT-- 392
Query: 364 ILEAYKLAVKAD------------------PVSA-F-------------GGIVAFNVEVD 391
L K D PV++ F +V NV +
Sbjct: 393 -LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 392 EALAKELRE--YRSPTDGET----------RMFYEIVVAPSYTEEGLE-----IL---RG 431
AK+++ Y DG R+ I+ P E + IL G
Sbjct: 452 ---AKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 432 KSKNLRILETKKNKKGKLSLRQVGGGWLAQDSDDLTPEDIQFK 474
+ L +L T +NK G +R + G L + DD D FK
Sbjct: 508 GASGLGVL-THRNKDGT-GVRVIVAGTLDINPDD----DYGFK 544
Score = 38.9 bits (90), Expect = 0.004
Identities = 46/294 (15%), Positives = 89/294 (30%), Gaps = 113/294 (38%)
Query: 255 YD-SAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYG--------ENPHQKAAFYVDKSL 305
Y S ++ +W + D K + YG NP +L
Sbjct: 1636 YKTSKAAQDVWNRA---DNH---------FKDT--YGFSILDIVINNP---------VNL 1672
Query: 306 AEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSE----------FKNPTCVIVK--HT 353
G I+ + M + +D + + F++ ++ T
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 354 NPC----GVASRDDILEAYKLAVKADPVSAFGG--------IVAF-NV-EVDEALAKELR 399
P A E K + F G + + +V ++ + E+
Sbjct: 1733 QPALTLMEKA----AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV--EVV 1786
Query: 400 EYR-------SPTDGETRMFYEIV------VAPSYTEEG---------------LEI--- 428
YR P D R Y ++ VA S+++E +EI
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 429 -LRGK----SKNLRILET-----KKNKKGKLSLRQVGGGWLAQDSDDLTPEDIQ 472
+ + + +LR L+T K K+ + ++ Q S L+ E+++
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL------QKS--LSLEEVE 1892
Score = 33.9 bits (77), Expect = 0.16
Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 24/82 (29%)
Query: 182 VTSAGGIDFEDGIE-------------NIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALL 228
+ A + E +E D G + A N V E ++
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 229 EFL---KG--------NQDDQQ 239
E + G N ++QQ
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQ 1852
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 51.4 bits (124), Expect = 4e-08
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 24/99 (24%)
Query: 76 KQALISL--SDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLD 133
K LI + S + + L G+ + +T T+ L V T V +
Sbjct: 25 KGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPS------Q 78
Query: 134 GRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVV 172
+I + + I DLV+
Sbjct: 79 EGQNPSLSSI-------------RKLIRDGSI---DLVI 101
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 52.1 bits (126), Expect = 4e-07
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 47/138 (34%)
Query: 78 ALISL--SDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGR 135
AL+S+ DK+ + L L + G+ + +T GTA L AG++ V ++ +GR
Sbjct: 945 ALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVH------EGR 998
Query: 136 VKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE 195
P+I D + ++N T++G ED
Sbjct: 999 -----PHI-------------QDRIKNGEY---TY-IIN--------TTSGRRAIEDSRV 1028
Query: 196 NIDIGGPAMIRAAAKNHK 213
IR +A +K
Sbjct: 1029 ---------IRRSALQYK 1037
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator,
developmental protein, dioxygenase, iron, metal-binding,
nucleus, oxidoreductase; NMR {Homo sapiens}
Length = 96
Score = 31.0 bits (70), Expect = 0.22
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 246 WKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKS 285
K ++ E W ++ + P LKS
Sbjct: 42 SKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKS 81
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN
structural genomics of infectious diseases, csgid; HET:
MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Length = 431
Score = 32.8 bits (76), Expect = 0.27
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 186 GGIDFEDGIENIDIGG---PAMIRAAAKNHKDVLVVVGSED 223
G E +EN+DI ++ A + L +VG E
Sbjct: 38 AGTALEPTLENVDIAATDIAGLLAFAQSHDIG-LTIVGPEA 77
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine
synthesis, enzyme, protein-ATP complex, structural GE
structural genomics consortium, SGC; HET: ATP; 2.45A
{Homo sapiens}
Length = 452
Score = 31.3 bits (72), Expect = 0.75
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 186 GGIDFEDGIENIDIG---GPAMIRAAAKNHKDVLVVVGSED 223
G + I N I A+ + + + VVVG E
Sbjct: 59 AGTACSEKISNTAISISDHTALAQFCKEKKIE-FVVVGPEA 98
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Length = 117
Score = 29.5 bits (66), Expect = 0.92
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 246 WKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKS 285
K Y++ + W ++A+ +PP + L+S
Sbjct: 46 SKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRS 85
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 30.1 bits (68), Expect = 0.97
Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 148 LARRDQKHHMDALSEHGIGTFDLVVVNL--YPFYDKVTSAGGIDFEDGIENIDIGGPAMI 205
R D L + D+VV N P D GG G E ID
Sbjct: 59 SHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGGG---YLGREVIDR-----F 110
Query: 206 RAAAKNHKDVLVVVGSEDYPALLEFLKGN 234
A L+V+ + +L L+
Sbjct: 111 VDAVTVGMLYLLVIEANRPKEVLARLEER 139
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 122
Score = 29.5 bits (66), Expect = 1.0
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 246 WKAFQHVAS---YDSAVSEWLWKQIAEEDKFPPSFTVPLELKS 285
++ + VA + + W +IA + F P V ++
Sbjct: 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRG 87
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 31.1 bits (71), Expect = 1.0
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 14/87 (16%)
Query: 105 TGGT-ATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHP---------NIHGGILARRDQK 154
G A L G V VEQ E L P + + R +
Sbjct: 17 GGAMLAYLLGRQGHRVVVVEQAR--RERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRV 74
Query: 155 HHMDALSEHG--IGTFDLVVVNLYPFY 179
H + G + F+ V+ ++
Sbjct: 75 RHELEVYHDGELLRYFNYSSVDARGYF 101
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 30.8 bits (70), Expect = 1.0
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 171 VVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPAL 227
+ P ++ D I +DI P + K+ D +
Sbjct: 33 TIAGTMP----NAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTGIV 85
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain,
DNA binding protein; NMR {Saccharomyces cerevisiae}
SCOP: a.4.3.1 PDB: 1kn5_A
Length = 123
Score = 29.6 bits (66), Expect = 1.2
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 246 WKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTV 279
+ Q D W +A+ + +
Sbjct: 54 YMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQL 87
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 1.2
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 26/99 (26%)
Query: 7 AAPASIAAQPPYSNILYTLLNKKRIPIFCVRVHTTSLRFSYSPIR---------AMAHSH 57
A SI A+ +L LL V V TTS RFS S
Sbjct: 484 AGKGSIGAE-----VLQGLLQGGA----KVVV-TTS-RFSKQVTDYYQSIYAKYGAKGST 532
Query: 58 TVSVPTNQPQSSSSSQANKQALIS-LSDKKDLASLGIGL 95
+ VP NQ S+ + +ALI + D + LG L
Sbjct: 533 LIVVPFNQ-----GSKQDVEALIEFIYDTEKNGGLGWDL 566
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding,
DNA binding protein; NMR {Saccharomyces cerevisiae}
Length = 116
Score = 29.2 bits (65), Expect = 1.2
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 246 WKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTV 279
+ Q D W +A+ + +
Sbjct: 55 YMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQL 88
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Drosophila melanogaster}
Length = 107
Score = 28.7 bits (64), Expect = 1.5
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 246 WKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKS 285
+ Q + + W ++A ++P S +V LK+
Sbjct: 50 HRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKA 89
>2b4w_A Hypothetical protein, conserved; structural genomics, PSI, protein
structure initiative, structural genomics of pathogenic
protozoa consortium; 1.98A {Leishmania major} SCOP:
b.67.2.5
Length = 315
Score = 29.9 bits (67), Expect = 1.9
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 434 KNLRILETKKNKKGKLSLRQVGG----GWLAQDS-DDLTPEDIQ 472
K++R+L+ + + G S +VG G++ +S D+L E I
Sbjct: 133 KDIRVLQLQDGRLGVFSRPRVGRKASIGFVILNSIDELGAEVIA 176
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE,
ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Length = 209
Score = 29.6 bits (67), Expect = 2.0
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 417 VAPSYTEEGLEILRGKSKNLRILETKKNKKGKLSLRQVGGGWL 459
++ T++ LE + K NLR+ E + K S+ L
Sbjct: 33 ISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEIL 75
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A
1ryu_A
Length = 125
Score = 28.5 bits (63), Expect = 2.2
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 246 WKAFQHVAS---YDSAVSEWLWKQIAEEDKFPPSFTVPLELKS 285
++ + V W+++A S + LK
Sbjct: 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKK 96
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine
nucleotid structural genomics, NPPSFA; 2.80A {Thermus
thermophilus}
Length = 417
Score = 29.7 bits (68), Expect = 2.6
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 186 GGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSED 223
G++ + + A+ A D L +VG E
Sbjct: 35 AGMEALAELVPWNGDVEALADWALAEGID-LTLVGPEA 71
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 29.5 bits (66), Expect = 2.7
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 197 IDIGGPAMIRAAAKNHKDVLVVVGS 221
+D+ I+AAAK + V V S
Sbjct: 115 LDVS-KVAIKAAAKRYPQVTFCVAS 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.1
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 14/32 (43%)
Query: 282 ELKSSLRYGENPHQKAAFYVDKS---LAEVNA 310
+L++SL+ Y D S LA + A
Sbjct: 24 KLQASLK----------LYADDSAPALA-IKA 44
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal
binding; HET: ANP; 2.10A {Bacillus subtilis} PDB:
2xd4_A*
Length = 422
Score = 29.0 bits (66), Expect = 3.8
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 186 GGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSED 223
G+ + NI+ A + + AK ++ L +VG E
Sbjct: 35 DGMAASAQLVNIEESDHAGLVSFAKQNQVGLTIVGPEV 72
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module,
xylan-binding; 2.1A {Clostridium thermocellum} SCOP:
b.18.1.7 PDB: 1h6y_A 1h6x_A
Length = 160
Score = 28.1 bits (62), Expect = 4.0
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 231 LKGNQDDQQFRRKLAWKAFQHVASYDSAVSEWL----WKQIAEEDKFPPSFTVPLELKSS 286
F KL + YD+ + + W + P + +P +
Sbjct: 79 FIEGASSTTFCMKLQYVDGSGTQRYDTIDMKTVGPNQWVHLYN-----PQYRIPSDATDM 133
Query: 287 LRYGENPHQKAAFYVD 302
Y E FY+D
Sbjct: 134 YVYVETADDTINFYID 149
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein,
DNA-binding motif, protein-DNA interaction; NMR {Homo
sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Length = 107
Score = 27.5 bits (61), Expect = 4.6
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 246 WKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFT-VPLELKS 285
++A Q + Y++ + WK I +E P T +
Sbjct: 39 FQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRR 79
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer,
AT-rich interaction domain, NESG, ARID, cytopla binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 145
Score = 27.8 bits (61), Expect = 5.2
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 246 WKAFQHVAS---YDSAVSEWLWKQIAEEDKFPPSFT-VPLELKS 285
+ + V +++ LW++I + P S T L++
Sbjct: 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRT 110
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel,
hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Length = 145
Score = 27.4 bits (62), Expect = 6.4
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 422 TEEGLEILRGKSKNLRILETKKNKKGKLSLRQVGGGWL 459
E+ L + RI K L+++Q GG L
Sbjct: 38 DEQKANRLCERVLGYRIFSD-AEGKMNLNVQQAGGSVL 74
>1j7g_A D-tyrosyl-tRNA(Tyr) deacylase; D-Tyr-tRNA(Tyr) deacylase,
structural genomics, hypothetical structure 2 function
project, S2F; 1.64A {Haemophilus influenzae rd KW20}
SCOP: c.110.1.1
Length = 144
Score = 27.4 bits (62), Expect = 7.1
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 422 TEEGLEILRGKSKNLRILETKKNKKGKLSLRQVGGGWL 459
E + L K N RI +N K L+++Q G L
Sbjct: 38 NREKADKLAEKVLNYRIFSD-ENDKMNLNVQQAQGELL 74
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA
methylase, type I restriction enzyme ST protein; HET:
SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP:
c.66.1.45
Length = 445
Score = 28.0 bits (63), Expect = 7.6
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 139 LHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFED 192
LH GI R D+L + D+++ N PF + + I+ D
Sbjct: 230 LH-----GIGTDRSPIVCEDSLEKEPSTLVDVILANP-PFGTRPAGSVDINRPD 277
>3fz2_A Minor tail protein U; mixed alpha-beta fold, viral protein; 2.70A
{Enterobacteria phage lambda} PDB: 3fzb_A 1z1z_A
Length = 134
Score = 27.0 bits (59), Expect = 8.5
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 217 VVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASY------DSAVSEWLWKQIAEE 270
V D+PA+ +L G + + W+A H+ + S + W+ +I
Sbjct: 32 AVFDEADFPAVAVYLTGAEYTGEELDSDTWQAELHIEVFLPAQVPASELDAWMESRIYPV 91
Query: 271 DKFPPSFTVPLELKSSLRYG 290
P+ + + + Y
Sbjct: 92 MSDIPALSDLITSMVASGYD 111
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; 2.15A {Ehrlichia chaffeensis}
Length = 442
Score = 27.8 bits (63), Expect = 8.7
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 186 GGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSED 223
G+ I +IDI + K K LVV+G E
Sbjct: 56 EGMSGLADIIDIDINSTIEVIQVCKKEKIELVVIGPET 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.384
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,140,612
Number of extensions: 515375
Number of successful extensions: 1594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1549
Number of HSP's successfully gapped: 50
Length of query: 521
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 423
Effective length of database: 3,965,535
Effective search space: 1677421305
Effective search space used: 1677421305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)