RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009955
(521 letters)
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of
bifunctional purine biosynthesis enzyme ATIC {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 197
Score = 167 bits (424), Expect = 9e-50
Identities = 84/198 (42%), Positives = 120/198 (60%), Gaps = 5/198 (2%)
Query: 75 NKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDG 134
+ AL+S+S+K L L LG ++++GGTAT+L +AG+ V V LT FPEML G
Sbjct: 2 QQLALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGG 61
Query: 135 RVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGI 194
RVKTLHP +H GILAR + + D + +VV NLYPF S+ G+ + +
Sbjct: 62 RVKTLHPAVHAGILARNIPEDNADMNKQDFS-LVRVVVCNLYPFVK-TVSSPGVTVPEAV 119
Query: 195 ENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQD---DQQFRRKLAWKAFQH 251
E IDIGG A++RAAAKNH V VV DY ++ + + ++D + RR LA KAF H
Sbjct: 120 EKIDIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTH 179
Query: 252 VASYDSAVSEWLWKQIAE 269
A YD+A+S++ K+ ++
Sbjct: 180 TAQYDAAISDYFRKEYSK 197
>d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 393
Score = 156 bits (394), Expect = 3e-43
Identities = 63/257 (24%), Positives = 89/257 (34%), Gaps = 48/257 (18%)
Query: 286 SLRYGENPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKN- 344
LRYG NPHQ A + + N DA AW V E K
Sbjct: 6 PLRYGMNPHQSPAQLYT--------TRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQA 57
Query: 345 ---PTCVIVKHTNPCGVA--------------------SRDDILEAYKLAVKADPVSAFG 381
P KH +P G A + + AY + AD +S+FG
Sbjct: 58 LGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFG 117
Query: 382 GIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILET 441
+A + +R + VVAP Y EE L+IL K KN
Sbjct: 118 DFIALSD----------ICDVPTAKIISREVSDGVVAPGYEEEALKILSKK-KNGGYCVL 166
Query: 442 KKNK---KGKLSLRQVGGGWLAQDSDDLT--PEDIQFKVVSEKKPQESELHDAEFAWLCV 496
+ + +R + G L Q ++ + V K ES + D A + V
Sbjct: 167 QMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAV 226
Query: 497 KHVKSNAIVIAKVGTSI 513
K+ +SN++ AK G I
Sbjct: 227 KYTQSNSVCYAKDGQVI 243
>d1zcza2 c.97.1.4 (A:158-452) AICAR transformylase domain of
bifunctional purine biosynthesis enzyme ATIC {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 151 bits (381), Expect = 2e-42
Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 28/228 (12%)
Query: 286 SLRYGENPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKNP 345
LRYGENPH+KA Y G A I H GK +S+NN LDA+ AW
Sbjct: 11 QLRYGENPHEKAFVY----------GKPAFEILHEGKTISFNNILDAENAWFMAKNLPRM 60
Query: 346 TCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPT 405
V+VKH +PCG A +D +E K A++AD S+FGGI+A N E+DE +AK L++Y
Sbjct: 61 GAVVVKHQSPCGAAIGEDKVEIVKKAIEADDESSFGGILAVNFEMDEEVAKSLKKY---- 116
Query: 406 DGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKNKKGKLSLRQVGGGWLAQDSDD 465
E++VAPS+T+E +E+L K L + GK++ + + +
Sbjct: 117 -------LEVIVAPSFTQEAIEVLSKKKVRLLKPGDYASWAGKMA-------FGSLVLSE 162
Query: 466 LTPEDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKVGTSI 513
+ F++V + E EL D EFA+ V+ KSNA++IAK G ++
Sbjct: 163 RKYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTV 210
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of
bifunctional purine biosynthesis enzyme ATIC {Thermotoga
maritima [TaxId: 2336]}
Length = 157
Score = 127 bits (321), Expect = 2e-35
Identities = 58/188 (30%), Positives = 83/188 (44%), Gaps = 35/188 (18%)
Query: 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGR 135
K+ L+SL +K+ + L E G+ I ++ GTA L++ G+ V +T F +L G
Sbjct: 2 KRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGL 61
Query: 136 VKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE 195
VKTLHP I GIL + + V+LYP
Sbjct: 62 VKTLHPEIFAGILGPEPRWDVVF--------------VDLYPP----------------P 91
Query: 196 NIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASY 255
+IDIGG A++RAAAKN K V E +E DD++ R+ LA F + Y
Sbjct: 92 DIDIGGVALLRAAAKNWKKVKPAFDMETLKLAIE-----IDDEETRKYLAGMTFAFTSVY 146
Query: 256 DSAVSEWL 263
DS +
Sbjct: 147 DSIRANQF 154
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large
subunit allosteric, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 34.9 bits (80), Expect = 0.006
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 78 ALISL--SDKKDLASLGIGLQELGYTIVSTGGTATSLENA 115
AL+S+ DK+ + L L + G+ + +T GTA L A
Sbjct: 10 ALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEA 49
>d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga
maritima [TaxId: 2336]}
Length = 156
Score = 34.9 bits (80), Expect = 0.009
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 78 ALISL-SDKKDLASLGIGLQEL--GYTIVSTGGTATSL-ENAGVSVTKV 122
ALI+ K+DL + + +TG T L E G+ V ++
Sbjct: 15 ALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRL 63
>d1b93a_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Escherichia
coli [TaxId: 562]}
Length = 148
Score = 33.8 bits (77), Expect = 0.019
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 78 ALISL-SDKKDLASLGIGLQEL--GYTIVSTGGTATSLENAGVSVTKV 122
AL++ K+ L S Q L + + +TG T + A
Sbjct: 15 ALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNA 62
>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 28.3 bits (62), Expect = 1.4
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 331 DADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKADP 376
+ + + C++ + G+ ++ D+L+ DP
Sbjct: 118 PMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMANQDP 163
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 28.3 bits (62), Expect = 2.5
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 354 NPCGVASRDDI---LE--AYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGE 408
NP + SR + +E K+A + G F E ++K LRE+ + G
Sbjct: 996 NPHAIPSRMTVAHLIECLLSKVAALS---GNEGDASPFTDITVEGISKLLREHGYQSRGF 1052
Query: 409 TRMF---------YEIVVAPSY 421
M+ +I P+Y
Sbjct: 1053 EVMYNGHTGKKLMAQIFFGPTY 1074
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 102
Score = 26.7 bits (59), Expect = 2.8
Identities = 4/34 (11%), Positives = 9/34 (26%)
Query: 246 WKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTV 279
+ Q D W +A+ + +
Sbjct: 40 YMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQL 73
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
protein {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 128
Score = 27.2 bits (60), Expect = 2.8
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 246 WKAFQHVAS---YDSAVSEWLWKQIAEEDKFPPSFT-VPLELKS 285
++ + V + +++ LW++I + P S T L++
Sbjct: 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRT 98
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 26.8 bits (59), Expect = 3.7
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 246 WKAFQHVAS---YDSAVSEWLWKQIAEEDKFPPSFTVPLELKS 285
++ + V W+++A S + LK
Sbjct: 53 YRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKK 95
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 26.7 bits (58), Expect = 4.1
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 318 QHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYK 369
++ N ++E + +I + G+ + D+LEA +
Sbjct: 75 IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASR 126
>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos
taurus), brain [TaxId: 9913]}
Length = 400
Score = 27.7 bits (60), Expect = 4.2
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 87 DLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGG 146
D + L+ +G +V LE + + QL N GG
Sbjct: 317 DSCAAHAILRAMGGGMVDLKE---CLERNPDTGLDLPQLVYHVGNEGAAGVDQWAN-KGG 372
Query: 147 ILARRDQKHH---MDALSEH 163
++A R +K + L +H
Sbjct: 373 LIAYRSEKQLETFLSRLLQH 392
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 26.4 bits (57), Expect = 4.5
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 190 FEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYP 225
F D I+++++ + A + +G + P
Sbjct: 4 FLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCP 39
>d1z1za1 d.323.1.1 (A:2-130) Minor tail protein gpU {Bacteriophage
lambda [TaxId: 10710]}
Length = 129
Score = 26.3 bits (58), Expect = 5.0
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 217 VVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASY------DSAVSEWLWKQIAEE 270
V D+PA+ +L G + + W+A H+ + DS + W+ +I
Sbjct: 28 AVFDEADFPAVAVYLTGAEYTGEELDSDTWQAELHIEVFLPAQVPDSELDAWMESRIYPV 87
Query: 271 DKFPPSFTVPLELKSSLRY 289
P+ + + + Y
Sbjct: 88 MSDIPALSDLITSMVASGY 106
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 26.0 bits (57), Expect = 5.1
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 246 WKAFQHVAS---YDSAVSEWLWKQIAEEDKFPPSFT-VPLELKS 285
W FQ Y++ + WK I +E P T +
Sbjct: 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRR 79
>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 122
Score = 26.0 bits (56), Expect = 6.6
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 316 AIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTN-PCGVASRDDILEAY 368
A+ A + E+ V+V P G+ + DI+ Y
Sbjct: 63 AMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY 116
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId:
562]}
Length = 158
Score = 26.1 bits (57), Expect = 7.0
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 91 LGI--GLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGIL 148
LGI G + GY ++ G S +G TKV+ L +++ V +
Sbjct: 4 LGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYF 63
Query: 149 ARRDQKHHMDALSEHGIG 166
A +A S +G
Sbjct: 64 AIEQVFMAKNADSALKLG 81
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
{Escherichia coli [TaxId: 562]}
Length = 347
Score = 26.4 bits (58), Expect = 9.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 95 LQELGYTIVST--GGTATSLENAGVSVT 120
Q+ G TI G TSL+ G S+T
Sbjct: 295 CQQAGLTIERNLIGAYCTSLDMTGFSIT 322
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.384
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,930,490
Number of extensions: 92308
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 21
Length of query: 521
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 432
Effective length of database: 1,185,626
Effective search space: 512190432
Effective search space used: 512190432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)