BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009956
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/495 (65%), Positives = 387/495 (78%), Gaps = 6/495 (1%)
Query: 26 ICKSLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLT 85
+ +SL ++G I G GA A +DFGG KPLAV+RP G +D+A +KAA LT
Sbjct: 30 VSESLNIQGEILCG-GAAADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDKLT 88
Query: 86 VAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKG---STYLDVSGGALWEDVLKR 142
VAARGNGHSINGQA A+ GLV+D +T ++HFE+ + G + ++DVSGGALWEDVLKR
Sbjct: 89 VAARGNGHSINGQAXAEGGLVVDXSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKR 148
Query: 143 CVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSE 202
CV ++GLAPRSWTDYL LTVGGTLSNAGVSGQAFRYGPQ SNV +LDVVTGNGD+VTCSE
Sbjct: 149 CVSEYGLAPRSWTDYLGLTVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSE 208
Query: 203 SRQPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLKEE 262
ELFF+VLGGLGQFGIITRARVLLQ APD VRWIR+VY EFDEFT+DAE LVS K E
Sbjct: 209 IENSELFFSVLGGLGQFGIITRARVLLQPAPDXVRWIRVVYTEFDEFTQDAEWLVSQKNE 268
Query: 263 RESFDYVEGFVFVNSDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALHYNNSDP 322
SFDYVEGFVFVN D VNGWP+VPL P FDP LPQ+ GSVLYCLE+ LHY +SD
Sbjct: 269 -SSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDS 327
Query: 323 RSAVDAVVDRLLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPHPWLNMFV 382
S +D V+RL+ RL F L F+VD+ YVDFLLRVK+ EE A+ NG W++PHPWLN+FV
Sbjct: 328 NSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFV 387
Query: 383 SKSNLAEFNRVVFNEILKDGINGPMLVYPLLRSKWDDRTSVMVPEE-EIFYLVALLRFPP 441
SK ++ +FNR VF E++K+G+NGP LVYPLLRS+WDDRTSV++PEE EIFY+VALLRF P
Sbjct: 388 SKRDIGDFNRTVFKELVKNGVNGPXLVYPLLRSRWDDRTSVVIPEEGEIFYIVALLRFVP 447
Query: 442 PHEDGASIKKLVDQNRGIVQYCKDRGFDFKLFFPHYKSEEEWKCHFGDRWTRFRDSKKAF 501
P +S++K V QN+ IV +C G D+KL+ PHYKS+EEW HFG+RW+RF D K F
Sbjct: 448 PCAKVSSVEKXVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWSRFVDRKAXF 507
Query: 502 DPKHILAPGQKIFSR 516
DP IL+PGQKIF+R
Sbjct: 508 DPXAILSPGQKIFNR 522
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 214/502 (42%), Positives = 296/502 (58%), Gaps = 22/502 (4%)
Query: 29 SLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSN--LTV 86
+L L G + AT +A DFG + S P AV+ PS D+ ++ AA+ T+
Sbjct: 22 ALALDGKLRTDSNAT-AAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTI 80
Query: 87 AARGNGHSINGQAMADRGLVIDMGSTGDSHF--EIVKVKGSTYLDVSGGALWEDVLKRCV 144
A RG GHS+ GQA A G+V++M S GD+ I Y+D G +W DVL+ +
Sbjct: 81 AFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASL 140
Query: 145 EDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESR 204
G+APRSWTDYL LTVGGTLSNAG+SGQAFR+GPQISNV ++DV+TG+G+MVTCS+
Sbjct: 141 AR-GVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQL 199
Query: 205 QPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLK---- 260
+LF VLGGLGQFG+ITRAR+ ++ AP + RW+RLVY +F F+ D E L + +
Sbjct: 200 NADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGG 259
Query: 261 -EERESFDYVEGFVFVN---SDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALH 316
YVEG VFVN + D N D A++ A + + +Y +E L+
Sbjct: 260 GASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIV--ALAGERNATTVYSIEATLN 317
Query: 317 YNN-SDPRSAVDAVVDRLLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPH 375
Y+N + +AVD + +L L +V FQ DV+Y FL RV E G+W PH
Sbjct: 318 YDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGSEVALNKLGLWRVPH 377
Query: 376 PWLNMFVSKSNLAEFNRVVFNEILKDG-INGPMLVYPLLRSKWDDRTSVMVPEEEIFYLV 434
PWLNMFV +S +A+F+R VF IL+ I GP++VYPL +S WDD S P E++FY V
Sbjct: 378 PWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAV 437
Query: 435 ALLRFPPPHEDGASIKKLVDQNRGIVQYCKDRGFDFKLFFPHYKSEEEWKCHFG-DRWTR 493
+LL D + +L +QNR I+++C G +K + + +W HFG +W R
Sbjct: 438 SLLFSSVAPND---LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNR 494
Query: 494 FRDSKKAFDPKHILAPGQKIFS 515
F + K +DPK +L+PGQ IF+
Sbjct: 495 FVEMKNKYDPKRLLSPGQDIFN 516
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 214/502 (42%), Positives = 296/502 (58%), Gaps = 22/502 (4%)
Query: 29 SLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSN--LTV 86
+L L G + AT +A DFG + S P AV+ PS D+ ++ AA+ T+
Sbjct: 22 ALALDGKLRTDSNAT-AAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTI 80
Query: 87 AARGNGHSINGQAMADRGLVIDMGSTGDSHF--EIVKVKGSTYLDVSGGALWEDVLKRCV 144
A RG GHS+ GQA A G+V++M S GD+ I Y+D G +W DVL+ +
Sbjct: 81 AFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASL 140
Query: 145 EDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESR 204
G+APRSWTDYL LTVGGTLSNAG+SGQAFR+GPQISNV ++DV+TG+G+MVTCS+
Sbjct: 141 AR-GVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQL 199
Query: 205 QPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLK---- 260
+LF VLGGLGQFG+ITRAR+ ++ AP + RW+RLVY +F F+ D E L + +
Sbjct: 200 NADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGG 259
Query: 261 -EERESFDYVEGFVFVN---SDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALH 316
YVEG VFVN + D N D A++ A + + +Y +E L+
Sbjct: 260 GASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIV--ALAGERNATTVYSIEATLN 317
Query: 317 YNN-SDPRSAVDAVVDRLLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPH 375
Y+N + +AVD + +L L +V FQ DV+Y FL RV E G+W PH
Sbjct: 318 YDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPH 377
Query: 376 PWLNMFVSKSNLAEFNRVVFNEILKDG-INGPMLVYPLLRSKWDDRTSVMVPEEEIFYLV 434
PWLNMFV +S +A+F+R VF IL+ I GP++VYPL +S WDD S P E++FY V
Sbjct: 378 PWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAV 437
Query: 435 ALLRFPPPHEDGASIKKLVDQNRGIVQYCKDRGFDFKLFFPHYKSEEEWKCHFG-DRWTR 493
+LL D + +L +QNR I+++C G +K + + +W HFG +W R
Sbjct: 438 SLLFSSVAPND---LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNR 494
Query: 494 FRDSKKAFDPKHILAPGQKIFS 515
F + K +DPK +L+PGQ IF+
Sbjct: 495 FVEMKNKYDPKRLLSPGQDIFN 516
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 214/502 (42%), Positives = 296/502 (58%), Gaps = 22/502 (4%)
Query: 29 SLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSN--LTV 86
+L L G + AT +A DFG + S P AV+ PS D+ ++ AA+ T+
Sbjct: 22 ALALDGKLRTDSNAT-AAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTI 80
Query: 87 AARGNGHSINGQAMADRGLVIDMGSTGDSHF--EIVKVKGSTYLDVSGGALWEDVLKRCV 144
A RG GHS+ GQA A G+V++M S GD+ I Y+D G +W DVL+ +
Sbjct: 81 AFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASL 140
Query: 145 EDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESR 204
G+APRSWTDYL LTVGGTLSNAG+SGQAFR+GPQISNV ++DV+TG+G+MVTCS+
Sbjct: 141 AR-GVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQL 199
Query: 205 QPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLK---- 260
+LF VLGGLGQFG+ITRAR+ ++ AP + RW+RLVY +F F+ D E L + +
Sbjct: 200 NADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGG 259
Query: 261 -EERESFDYVEGFVFVN---SDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALH 316
YVEG VFVN + D N D A++ A + + +Y +E L+
Sbjct: 260 GASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIV--ALAGERNATTVYSIEATLN 317
Query: 317 YNN-SDPRSAVDAVVDRLLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPH 375
Y+N + +AVD + +L L +V FQ DV+Y FL RV E G+W PH
Sbjct: 318 YDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPH 377
Query: 376 PWLNMFVSKSNLAEFNRVVFNEILKDG-INGPMLVYPLLRSKWDDRTSVMVPEEEIFYLV 434
PWLNMFV +S +A+F+R VF IL+ I GP++VYPL +S WDD S P E++FY V
Sbjct: 378 PWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAV 437
Query: 435 ALLRFPPPHEDGASIKKLVDQNRGIVQYCKDRGFDFKLFFPHYKSEEEWKCHFG-DRWTR 493
+LL D + +L +QNR I+++C G +K + + +W HFG +W R
Sbjct: 438 SLLFSSVAPND---LARLQEQNRRILRFCDLAGIQYKTYAARHTDRSDWVRHFGAAKWNR 494
Query: 494 FRDSKKAFDPKHILAPGQKIFS 515
F + K +DPK +L+PGQ IF+
Sbjct: 495 FVEMKNKYDPKRLLSPGQDIFN 516
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/502 (42%), Positives = 295/502 (58%), Gaps = 22/502 (4%)
Query: 29 SLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSN--LTV 86
+L L G + AT +A DFG + S P AV+ PS D+ ++ AA+ T+
Sbjct: 40 ALALDGKLRTDSNAT-AAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTI 98
Query: 87 AARGNGHSINGQAMADRGLVIDMGSTGDSHF--EIVKVKGSTYLDVSGGALWEDVLKRCV 144
A RG GHS+ GQA A G+V++M S GD+ I Y+D G +W DVL+ +
Sbjct: 99 AFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASL 158
Query: 145 EDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESR 204
G+APRSWTDYL LTVGGTLSNAG+SGQAFR+GPQISNV ++DV+TG+G+MVTCS+
Sbjct: 159 AR-GVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQL 217
Query: 205 QPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLK---- 260
+LF VLGGLGQFG+ITRAR+ ++ AP + RW+R VY +F F+ D E L + +
Sbjct: 218 NADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSADQERLTAPRPGGG 277
Query: 261 -EERESFDYVEGFVFVN---SDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALH 316
YVEG VFVN + D N D A++ A + + +Y +E L+
Sbjct: 278 GASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIV--ALAGERNATTVYSIEATLN 335
Query: 317 YNN-SDPRSAVDAVVDRLLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPH 375
Y+N + +AVD + +L L +V FQ DV+Y FL RV E G+W PH
Sbjct: 336 YDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPH 395
Query: 376 PWLNMFVSKSNLAEFNRVVFNEILKDG-INGPMLVYPLLRSKWDDRTSVMVPEEEIFYLV 434
PWLNMFV +S +A+F+R VF IL+ I GP++VYPL +S WDD S P E++FY V
Sbjct: 396 PWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAV 455
Query: 435 ALLRFPPPHEDGASIKKLVDQNRGIVQYCKDRGFDFKLFFPHYKSEEEWKCHFG-DRWTR 493
+LL D + +L +QNR I+++C G +K + + +W HFG +W R
Sbjct: 456 SLLFSSVAPND---LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNR 512
Query: 494 FRDSKKAFDPKHILAPGQKIFS 515
F + K +DPK +L+PGQ IF+
Sbjct: 513 FVEMKNKYDPKRLLSPGQDIFN 534
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/502 (42%), Positives = 296/502 (58%), Gaps = 22/502 (4%)
Query: 29 SLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSN--LTV 86
+L L G + AT +A DFG + S P AV+ PS D+ ++ AA+ T+
Sbjct: 22 ALALDGKLRTDSNAT-AAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTI 80
Query: 87 AARGNGHSINGQAMADRGLVIDMGSTGDSHF--EIVKVKGSTYLDVSGGALWEDVLKRCV 144
A RG GHS+ GQA A G+V++M S GD+ I Y+D G +W DVL+ +
Sbjct: 81 AFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASL 140
Query: 145 EDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESR 204
G+APRSWT+YL LTVGGTLSNAG+SGQAFR+GPQISNV ++DV+TG+G+MVTCS+
Sbjct: 141 AR-GVAPRSWTEYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQL 199
Query: 205 QPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLK---- 260
+LF VLGGLGQFG+ITRAR+ ++ AP + RW+RLVY +F F+ D E L + +
Sbjct: 200 NADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGG 259
Query: 261 -EERESFDYVEGFVFVN---SDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALH 316
YVEG VFVN + D N D A++ A + + +Y +E L+
Sbjct: 260 GASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIV--ALAGERNATTVYSIEATLN 317
Query: 317 YNN-SDPRSAVDAVVDRLLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPH 375
Y+N + +AVD + +L L +V FQ DV+Y FL RV E G+W PH
Sbjct: 318 YDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPH 377
Query: 376 PWLNMFVSKSNLAEFNRVVFNEILKDG-INGPMLVYPLLRSKWDDRTSVMVPEEEIFYLV 434
PWLNMFV +S +A+F+R VF IL+ I GP++VYPL +S WDD S P E++FY V
Sbjct: 378 PWLNMFVPRSRIADFDRGVFKGILQGTDIVGPLIVYPLNKSMWDDGMSAATPSEDVFYAV 437
Query: 435 ALLRFPPPHEDGASIKKLVDQNRGIVQYCKDRGFDFKLFFPHYKSEEEWKCHFG-DRWTR 493
+LL D + +L +QNR I+++C G +K + + +W HFG +W R
Sbjct: 438 SLLFSSVAPND---LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNR 494
Query: 494 FRDSKKAFDPKHILAPGQKIFS 515
F + K +DPK +L+PGQ IF+
Sbjct: 495 FVEMKNKYDPKRLLSPGQDIFN 516
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 213/502 (42%), Positives = 295/502 (58%), Gaps = 22/502 (4%)
Query: 29 SLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSN--LTV 86
+L L G + AT +A DFG + S P AV+ PS D+ ++ AA+ T+
Sbjct: 22 ALALDGKLRTDSNAT-AAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTI 80
Query: 87 AARGNGHSINGQAMADRGLVIDMGSTGDSHF--EIVKVKGSTYLDVSGGALWEDVLKRCV 144
A RG GHS+ GQA A G+V++M S GD+ I Y+D G +W DVL+ +
Sbjct: 81 AFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASL 140
Query: 145 EDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESR 204
G+APRSWTDYL LTVGGTLSNAG+SGQAFR+GPQISNV ++DV+TG+G+MVTCS+
Sbjct: 141 AR-GVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQL 199
Query: 205 QPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLK---- 260
+LF VLGGLGQFG+ITRAR+ ++ AP + RW+RLVY +F F+ D E L + +
Sbjct: 200 NADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPRPGGG 259
Query: 261 -EERESFDYVEGFVFVN---SDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALH 316
YVEG VFVN + D N D A++ A + + +Y +E L+
Sbjct: 260 GASFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIV--ALAGERNATTVYSIEATLN 317
Query: 317 YNN-SDPRSAVDAVVDRLLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPH 375
Y+N + +AVD + +L L +V FQ DV+Y FL RV E G+W PH
Sbjct: 318 YDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWRVPH 377
Query: 376 PWLNMFVSKSNLAEFNRVVFNEILKDG-INGPMLVYPLLRSKWDDRTSVMVPEEEIFYLV 434
PWLNMFV +S +A+F+R VF IL+ I G ++VYPL +S WDD S P E++FY V
Sbjct: 378 PWLNMFVPRSRIADFDRGVFKGILQGTDIVGQLIVYPLNKSMWDDGMSAATPSEDVFYAV 437
Query: 435 ALLRFPPPHEDGASIKKLVDQNRGIVQYCKDRGFDFKLFFPHYKSEEEWKCHFG-DRWTR 493
+LL D + +L +QNR I+++C G +K + + +W HFG +W R
Sbjct: 438 SLLFSSVAPND---LARLQEQNRRILRFCDLAGIQYKTYLARHTDRSDWVRHFGAAKWNR 494
Query: 494 FRDSKKAFDPKHILAPGQKIFS 515
F + K +DPK +L+PGQ IF+
Sbjct: 495 FVEMKNKYDPKRLLSPGQDIFN 516
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 12/236 (5%)
Query: 53 GMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGST 112
G + +P + R A DVA ++ A + L ++ R GH+ NG A D G+V+D+
Sbjct: 33 GRHLQRPSLIARCLSAGDVAKSVRYA-CDNGLEISVRSGGHNPNGYATNDGGIVLDLRLM 91
Query: 113 GDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVS 172
H + + + GG + D++K + FGLA + + ++ G N GV
Sbjct: 92 NSIHIDTAGSRAR----IGGGVISGDLVKEAAK-FGLAAVTGM-HPKVGFCGLALNGGVG 145
Query: 173 GQAFRYGPQISNVAQLDVVTGNGDMVTCSESRQPELFFNVLGGLGQFGIITRARVLLQSA 232
+YG N+ +VT GD++ CS+ +PELF+ V G FG++T V L
Sbjct: 146 FLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVRGAGPNFGVVTEVEVQLYEL 205
Query: 233 PDKVRWIRLVYAEFDEFTRDAELLVSLKEE-RESFDYVEGFVFVNSDDTVNGWPSV 287
P K+ + +A + A LL SL + E D++ VFV D+ N PSV
Sbjct: 206 PRKMLAGFITWAP--SVSELAGLLTSLLDALNEMADHIYPSVFVGVDE--NRAPSV 257
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 9/203 (4%)
Query: 53 GMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAM--ADRGLVIDMG 110
GM+ P V+ P+ DDV ++ A + NL + G G S++ M AD I
Sbjct: 200 GMFERIPDIVLWPTCHDDVVKIVNLA-CKYNLCIIPIGGGTSVSYGLMCPADETRTIISL 258
Query: 111 STGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRL-TVGGTLSNA 169
T + + + + V G ++ L+R +++ G D L TVGG +S
Sbjct: 259 DTSQMNRILWVDENNLTAHVEAGITGQE-LERQLKESGYCTGHEPDSLEFSTVGGWISTR 317
Query: 170 GVSGQAFRYGPQISNVAQLDVVTGNGDM-VTCSESRQ---PELFFNVLGGLGQFGIITRA 225
+ YG V + VVT G + +C R P++ ++G G G+IT A
Sbjct: 318 ASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEA 377
Query: 226 RVLLQSAPDKVRWIRLVYAEFDE 248
+ ++ P+ ++ + + F++
Sbjct: 378 TIKIRPTPEYQKYGSVAFPNFEQ 400
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 9/203 (4%)
Query: 53 GMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAM--ADRGLVIDMG 110
GM+ P V+ P+ DDV ++ A + NL + G G S++ M AD I
Sbjct: 200 GMFERIPDIVLWPTCHDDVVKIVNLA-CKYNLCIIPIGGGTSVSYGLMCPADETRTIISL 258
Query: 111 STGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRL-TVGGTLSNA 169
T + + + + V G ++ L+R +++ G D L TVGG +S
Sbjct: 259 DTSQMNRILWVDENNLTAHVEAGITGQE-LERQLKESGYCTGHEPDSLEFSTVGGWISTR 317
Query: 170 GVSGQAFRYGPQISNVAQLDVVTGNGDM-VTCSESRQ---PELFFNVLGGLGQFGIITRA 225
+ YG V + VVT G + +C R P++ ++G G G+IT A
Sbjct: 318 ASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEA 377
Query: 226 RVLLQSAPDKVRWIRLVYAEFDE 248
+ ++ P+ ++ + + F++
Sbjct: 378 TIKIRPTPEYQKYGSVAFPNFEQ 400
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 9/203 (4%)
Query: 53 GMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAM--ADRGLVIDMG 110
GM+ P V+ P+ DDV ++ A + NL + G G S++ M AD I
Sbjct: 200 GMFERIPDIVLWPTCHDDVVKIVNLA-CKYNLCIIPIGGGTSVSYGLMCPADETRTIISL 258
Query: 111 STGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRL-TVGGTLSNA 169
T + + + + V G ++ L+R +++ G D L TVGG +S
Sbjct: 259 DTSQMNRILWVDENNLTAHVEAGITGQE-LERQLKESGYCTGHEPDSLEFSTVGGWISTR 317
Query: 170 GVSGQAFRYGPQISNVAQLDVVTGNGDM-VTCSESRQ---PELFFNVLGGLGQFGIITRA 225
+ YG V + VVT G + +C R P++ ++G G G+IT A
Sbjct: 318 ASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEA 377
Query: 226 RVLLQSAPDKVRWIRLVYAEFDE 248
+ ++ P+ ++ + + F++
Sbjct: 378 TIKIRPTPEYQKYGSVAFPNFEQ 400
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 9/185 (4%)
Query: 57 YKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSH 116
+ PL V+RP ++V + K A+ V GN + GQ + +VI + D
Sbjct: 51 HSPL-VLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISL-KRXDKI 108
Query: 117 FEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAF 176
EI S + V GA+ + V ++ E L P S T+GG LS A
Sbjct: 109 REIDT--SSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAAL 166
Query: 177 RYGPQISNVAQLDVVTGNGDMVT-CSESRQPELFFNV----LGGLGQFGIITRARVLLQS 231
YG ++VV +G + S+ ++ +++ +G G GIIT A + L
Sbjct: 167 AYGLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFP 226
Query: 232 APDKV 236
P V
Sbjct: 227 KPRAV 231
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 71 VAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYLDV 130
V V +AA + V ARG G S A GLVIDM + H G+ +DV
Sbjct: 44 VRAVTRAAE-EGGRGVIARGLGRSYGDNAQNGGGLVIDMPALNRIH---SIDSGTRLVDV 99
Query: 131 SGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISN-VAQLD 189
G + ++K + GL ++TVGG + + G+ N V ++
Sbjct: 100 DAGVSLDQLMKAALPH-GLWVPVLPGTRQVTVGGAI-GCDIHGKNHHSAGSFGNHVRSME 157
Query: 190 VVTGNGDMVTCSES-RQPELFFNVLGGLGQFGIITRARV 227
++T NG++ + + +LF+ +GG G GII RA +
Sbjct: 158 LLTANGEVRHLTPAGPDSDLFWATVGGNGLTGIILRATI 196
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 8/198 (4%)
Query: 33 KGSIDFGVGATNGSADKDFGGMYSYKPLAVIR-PSGADDVAVVIKAAHLQSNLTVAARGN 91
+GS VGAT + G + V+R P V V + A ARG
Sbjct: 17 RGSHMLSVGATTTATRLTGWGRTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGL 76
Query: 92 GHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAP 151
G S A GLVIDM H K +D+ G + ++K + FGL
Sbjct: 77 GRSYGDNAQNGGGLVIDMTPLNTIHSIDADTK---LVDIDAGVNLDQLMKAALP-FGLWV 132
Query: 152 RSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISN-VAQLDVVTGNGDMVTCSESRQ-PELF 209
++TVGG ++ + G+ N V +D++T +G++ + + + ELF
Sbjct: 133 PVLPGTRQVTVGGAIA-CDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELF 191
Query: 210 FNVLGGLGQFGIITRARV 227
+ +GG G GII RA +
Sbjct: 192 WATVGGNGLTGIIMRATI 209
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 104 GLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVG 163
GLVIDM + H G+ +DV G + ++K + GL ++TVG
Sbjct: 11 GLVIDMPALNRIH---SIDSGTRLVDVDAGVSLDQLMKAALPH-GLWVPVLPGTRQVTVG 66
Query: 164 GTLSNAGVSGQAFRYGPQISN-VAQLDVVTGNGDMVTCSES-RQPELFFNVLGGLGQFGI 221
G + + G+ N V ++++T NG++ + + +LF+ +GG G GI
Sbjct: 67 GAI-GCDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLTGI 125
Query: 222 ITRARV 227
I RA +
Sbjct: 126 ILRATI 131
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 34/196 (17%)
Query: 58 KPLAVIRPSGADDVAVVIKAAHLQS--------NLTVAARGNGHSI--------NGQAMA 101
+P + P +A AH+QS NL V+A+ GHS NG M
Sbjct: 27 EPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMV 86
Query: 102 DRGLVIDMGS----TGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDY 157
+ID+ S TG +H E G + D R + G P
Sbjct: 87 QLDRMIDVISYNDKTGIAHVEPGARLGHL------ATVLNDKYGRAISH-GTCPG----- 134
Query: 158 LRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESRQPELFFNVLGGLG 217
+ + G ++ G + +G + +V + VV +G +V S + +LF+ + G
Sbjct: 135 --VGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGS 192
Query: 218 QFGIITRARVLLQSAP 233
FGI+ ++ AP
Sbjct: 193 NFGIVAVWKLATFPAP 208
>pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
pdb|2QGY|B Chain B, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
Length = 391
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 345 FQVDVSYVDFLLRVKQVEEHARANGMWDSPHPWLNMFVSKSNLAEFNRVVFN----EILK 400
F D+S + L+ + ++ A NG++ SPH W +M VS S + + N EI
Sbjct: 272 FNPDISGMGGLIDIIEISNEASNNGIFISPHCWNSMSVSASAMLHVCSSIPNSEKAEIFP 331
Query: 401 DGIN 404
D IN
Sbjct: 332 DYIN 335
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 19/221 (8%)
Query: 53 GMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQ---AMADRGLV-ID 108
G P ++ P ++V +++ AH + N+ + G G +I G +R V ID
Sbjct: 132 GQVKNAPDLIVLPHSHEEVERLVQLAH-KYNVVIIPMGGGSNIVGAIEPVSNERFTVSID 190
Query: 109 MGSTGDSHF-EIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS 167
M + + ++ + + G L + + K+ V G P S + T+GG L+
Sbjct: 191 MRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGV-SLGHDPDS---FEFSTLGGWLA 246
Query: 168 NAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESRQP---ELFFNVLGGLGQFGIITR 224
Q+ +YG VT G + + +R +LG G GIIT
Sbjct: 247 TCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITE 306
Query: 225 ARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLKEERES 265
A + + + P V + ++ F A + +L++ R S
Sbjct: 307 AVMKVHAVPQAVEYYGFLFPTF------AHAVSALQQIRSS 341
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 238 WIRLVYAEFDEFTRDAELLVSLKEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQV 294
W+ + ++ + LV+ +ER ++ ++V +D T PSVPLDP V
Sbjct: 551 WLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATN---PSVPLDPISV 604
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 238 WIRLVYAEFDEFTRDAELLVSLKEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQV 294
W+ + ++ + LV+ +ER ++ ++V +D T PSVPLDP V
Sbjct: 551 WLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATN---PSVPLDPISV 604
>pdb|1EI3|C Chain C, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|F Chain F, Crystal Structure Of Native Chicken Fibrinogen
Length = 409
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 233 PDKVRWIRLVYAEFDEFTRDAELLVSLKEERESF-----DYVEGFVFVNSDDTVNGWPSV 287
P K + LVY E D + +L + E F Y EGF ++ DDT W
Sbjct: 171 PQKAKQSFLVYCEIDTYGNGWTVLQRRLDGSEDFRRNWVQYKEGFGHLSPDDTTEFWLGN 230
Query: 288 PLDPAQVFDPAHLPQTAGSVLYCLEVAL 315
+ HL T ++ Y L + L
Sbjct: 231 --------EKIHLITTQSTLPYALRIEL 250
>pdb|1M1J|C Chain C, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|F Chain F, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 409
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 233 PDKVRWIRLVYAEFDEFTRDAELLVSLKEERESF-----DYVEGFVFVNSDDTVNGWPSV 287
P K + LVY E D + +L + E F Y EGF ++ DDT W
Sbjct: 171 PQKAKQSFLVYCEIDTYGNGWTVLQRRLDGSEDFRRNWVQYKEGFGHLSPDDTTEFWLGN 230
Query: 288 PLDPAQVFDPAHLPQTAGSVLYCLEVAL 315
+ HL T ++ Y L + L
Sbjct: 231 --------EKIHLITTQSTLPYALRIEL 250
>pdb|3FJ7|A Chain A, Crystal Structure Of L-Phospholactate Bound Peb3
pdb|3FJ7|B Chain B, Crystal Structure Of L-Phospholactate Bound Peb3
Length = 231
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 18 AENDDVSTICKSLGLKGSIDFGVGAT---NGSADKD-FGGMYSYKPLAVIRPSGADDVAV 73
A D + + G+K +++FG AT D D G LA+ G D
Sbjct: 13 ALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVS 72
Query: 74 VIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGG 133
IK + + + + +GN I G + + IV +G+ + SG
Sbjct: 73 KIKPLYFREAIILTQKGNPLKIKG-----------LKDLANKKVRIVVPEGAGKSNTSGT 121
Query: 134 ALWEDVLKRC 143
+WED++ R
Sbjct: 122 GVWEDMIGRT 131
>pdb|3FJG|A Chain A, Crystal Structure Of 3pg Bound Peb3
pdb|3FJG|B Chain B, Crystal Structure Of 3pg Bound Peb3
pdb|3FJG|C Chain C, Crystal Structure Of 3pg Bound Peb3
pdb|3FJG|D Chain D, Crystal Structure Of 3pg Bound Peb3
pdb|3FJM|A Chain A, Crystal Structure Of Phosphate Bound Peb3
pdb|3FJM|B Chain B, Crystal Structure Of Phosphate Bound Peb3
Length = 251
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 18 AENDDVSTICKSLGLKGSIDFGVGAT---NGSADKD-FGGMYSYKPLAVIRPSGADDVAV 73
A D + + G+K +++FG AT D D G LA+ G D
Sbjct: 33 ALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVS 92
Query: 74 VIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGG 133
IK + + + + +GN I G + + IV +G+ + SG
Sbjct: 93 KIKPLYFREAIILTQKGNPLKIKG-----------LKDLANKKVRIVVPEGAGKSNTSGT 141
Query: 134 ALWEDVLKRC 143
+WED++ R
Sbjct: 142 GVWEDMIGRT 151
>pdb|3FIR|A Chain A, Crystal Structure Of Glycosylated K135e Peb3
pdb|3FIR|B Chain B, Crystal Structure Of Glycosylated K135e Peb3
Length = 251
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 18 AENDDVSTICKSLGLKGSIDFGVGAT---NGSADKD-FGGMYSYKPLAVIRPSGADDVAV 73
A D + + G+K +++FG AT D D G LA+ G D
Sbjct: 33 ALKDIANKYSEKTGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVS 92
Query: 74 VIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGG 133
IK + + + + +GN I G + + IV +G+ + SG
Sbjct: 93 KIKPLYFREAIILTQKGNPLKIKG-----------LKDLANKKVRIVVPEGAGESNTSGT 141
Query: 134 ALWEDVLKRC 143
+WED++ R
Sbjct: 142 GVWEDMIGRT 151
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 190 VVTGNGDMVTCSESRQPELFFNVLGGLGQFGIITRARVLLQSAPDKV 236
VV + +V SE+ +LF+ + GG G F I++ AP+ +
Sbjct: 169 VVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEII 215
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 190 VVTGNGDMVTCSESRQPELFFNVLGGLGQFGIITRARVLLQSAPDKV 236
VV + +V SE+ +LF+ + GG G F I++ AP+ +
Sbjct: 169 VVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEII 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,862,128
Number of Sequences: 62578
Number of extensions: 744437
Number of successful extensions: 1435
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1370
Number of HSP's gapped (non-prelim): 42
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)