Query 009956
Match_columns 521
No_of_seqs 231 out of 2284
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 19:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 1.2E-76 2.7E-81 619.8 47.9 508 2-519 8-523 (525)
2 KOG1231 Proteins containing th 100.0 1.4E-66 3E-71 510.9 29.9 466 21-518 28-502 (505)
3 PLN02805 D-lactate dehydrogena 100.0 2.4E-61 5.3E-66 512.6 26.4 424 26-513 101-549 (555)
4 PRK11230 glycolate oxidase sub 100.0 2.2E-60 4.8E-65 503.2 28.4 430 23-514 21-473 (499)
5 TIGR00387 glcD glycolate oxida 100.0 1.5E-54 3.1E-59 452.0 28.4 391 62-511 1-413 (413)
6 KOG1232 Proteins containing th 100.0 5.4E-53 1.2E-57 404.9 16.9 427 21-513 54-511 (511)
7 COG0277 GlcD FAD/FMN-containin 100.0 1.6E-46 3.4E-51 399.5 37.1 425 32-513 7-456 (459)
8 KOG1233 Alkyl-dihydroxyacetone 100.0 5.2E-45 1.1E-49 350.5 17.8 433 50-510 152-610 (613)
9 PRK11282 glcE glycolate oxidas 100.0 1.8E-38 3.9E-43 319.4 26.1 185 67-259 3-195 (352)
10 PRK11183 D-lactate dehydrogena 100.0 1.1E-38 2.5E-43 327.9 24.4 242 23-274 5-308 (564)
11 TIGR01678 FAD_lactone_ox sugar 100.0 1.1E-36 2.4E-41 317.3 34.8 202 49-259 5-206 (438)
12 TIGR01679 bact_FAD_ox FAD-link 100.0 2.5E-36 5.3E-41 314.5 36.7 199 49-259 2-200 (419)
13 TIGR01676 GLDHase galactonolac 100.0 1.6E-35 3.4E-40 310.0 39.6 205 48-261 51-255 (541)
14 TIGR01677 pln_FAD_oxido plant- 100.0 1.9E-35 4.1E-40 313.9 35.2 210 42-258 15-235 (557)
15 PF09265 Cytokin-bind: Cytokin 100.0 2.4E-37 5.1E-42 297.0 16.7 279 233-514 1-281 (281)
16 PLN02465 L-galactono-1,4-lacto 100.0 3.2E-32 6.8E-37 287.5 39.3 206 47-261 85-290 (573)
17 PF01565 FAD_binding_4: FAD bi 99.9 2.9E-27 6.3E-32 210.0 13.6 138 59-201 1-139 (139)
18 PRK13905 murB UDP-N-acetylenol 99.9 2.4E-25 5.3E-30 221.8 15.3 182 31-233 8-193 (298)
19 PRK14652 UDP-N-acetylenolpyruv 99.9 2.6E-24 5.5E-29 213.5 17.7 190 22-233 5-196 (302)
20 PRK12436 UDP-N-acetylenolpyruv 99.9 5.4E-24 1.2E-28 211.7 15.2 187 25-232 8-197 (305)
21 PRK13906 murB UDP-N-acetylenol 99.9 1.6E-23 3.4E-28 208.3 17.8 191 21-232 4-197 (307)
22 KOG4730 D-arabinono-1, 4-lacto 99.9 2.8E-23 6.1E-28 205.6 16.1 192 55-254 46-237 (518)
23 PRK13903 murB UDP-N-acetylenol 99.9 1.7E-21 3.8E-26 196.5 15.5 179 35-233 14-197 (363)
24 TIGR00179 murB UDP-N-acetyleno 99.9 2.3E-21 5.1E-26 191.2 13.9 168 46-231 3-174 (284)
25 PRK14653 UDP-N-acetylenolpyruv 99.8 2.1E-20 4.5E-25 184.3 15.5 175 34-233 14-194 (297)
26 PRK14649 UDP-N-acetylenolpyruv 99.8 1.7E-20 3.6E-25 185.9 14.3 175 42-233 7-193 (295)
27 COG0812 MurB UDP-N-acetylmuram 99.8 7.9E-19 1.7E-23 169.5 16.7 190 42-260 7-199 (291)
28 PRK14650 UDP-N-acetylenolpyruv 99.8 3.9E-19 8.6E-24 174.6 13.0 174 42-234 19-196 (302)
29 PF02913 FAD-oxidase_C: FAD li 99.8 8.6E-21 1.9E-25 184.7 0.4 217 232-512 1-248 (248)
30 PRK00046 murB UDP-N-acetylenol 99.8 1.5E-18 3.3E-23 173.1 15.0 174 42-232 7-188 (334)
31 PRK14648 UDP-N-acetylenolpyruv 99.7 1.2E-17 2.6E-22 166.2 13.7 177 42-233 16-237 (354)
32 KOG1262 FAD-binding protein DI 99.7 3.2E-17 6.9E-22 159.4 8.8 142 106-251 105-247 (543)
33 PRK14651 UDP-N-acetylenolpyruv 99.6 4.1E-15 8.9E-20 144.2 14.4 161 42-232 7-170 (273)
34 PRK13904 murB UDP-N-acetylenol 99.4 3.7E-13 8E-18 129.4 10.0 156 42-234 5-161 (257)
35 PF08031 BBE: Berberine and be 98.1 2.1E-06 4.5E-11 60.4 2.5 32 482-513 14-46 (47)
36 PRK09799 putative oxidoreducta 96.8 0.0028 6E-08 62.0 7.0 140 61-228 4-155 (258)
37 PF00941 FAD_binding_5: FAD bi 96.8 0.0014 3E-08 60.0 4.6 102 59-170 2-116 (171)
38 TIGR02963 xanthine_xdhA xanthi 96.7 0.0083 1.8E-07 63.8 9.6 105 58-170 191-304 (467)
39 PF04030 ALO: D-arabinono-1,4- 96.6 0.0097 2.1E-07 58.4 9.2 120 378-509 128-253 (259)
40 TIGR03312 Se_sel_red_FAD proba 96.6 0.0054 1.2E-07 60.0 6.9 101 61-170 3-110 (257)
41 PRK09971 xanthine dehydrogenas 95.7 0.017 3.8E-07 57.6 5.8 103 61-170 6-119 (291)
42 TIGR03195 4hydrxCoA_B 4-hydrox 95.6 0.02 4.4E-07 57.6 5.7 102 59-169 4-117 (321)
43 TIGR03199 pucC xanthine dehydr 95.4 0.013 2.8E-07 57.6 3.4 97 65-169 1-109 (264)
44 PLN00107 FAD-dependent oxidore 95.3 0.22 4.8E-06 47.9 11.1 131 368-510 49-197 (257)
45 COG1319 CoxM Aerobic-type carb 94.2 0.24 5.2E-06 48.9 8.8 104 59-170 3-118 (284)
46 COG4630 XdhA Xanthine dehydrog 93.5 0.16 3.4E-06 51.0 6.1 129 56-196 200-337 (493)
47 PLN02906 xanthine dehydrogenas 93.5 0.12 2.6E-06 61.9 6.4 104 59-170 228-351 (1319)
48 PLN00192 aldehyde oxidase 93.4 0.2 4.4E-06 60.2 7.9 108 58-170 232-353 (1344)
49 TIGR02969 mam_aldehyde_ox alde 93.3 0.17 3.7E-06 60.7 7.1 103 60-170 237-359 (1330)
50 PF09330 Lact-deh-memb: D-lact 39.0 50 0.0011 32.3 4.6 19 492-510 263-281 (291)
51 KOG4730 D-arabinono-1, 4-lacto 38.4 17 0.00038 37.9 1.6 22 489-510 485-506 (518)
52 TIGR00178 monomer_idh isocitra 36.9 2.2E+02 0.0048 31.1 9.3 135 65-214 308-461 (741)
53 cd01760 RBD Ubiquitin-like dom 35.8 53 0.0012 25.2 3.5 29 124-152 10-38 (72)
54 PF00076 RRM_1: RNA recognitio 33.9 1.2E+02 0.0026 21.8 5.4 39 218-256 21-59 (70)
55 cd07033 TPP_PYR_DXS_TK_like Py 33.0 60 0.0013 28.9 4.0 28 61-89 126-153 (156)
56 cd01816 Raf_RBD Ubiquitin doma 27.9 89 0.0019 24.1 3.5 29 124-152 10-38 (74)
57 PF02779 Transket_pyr: Transke 27.4 85 0.0018 28.5 4.1 33 60-93 139-173 (178)
58 smart00455 RBD Raf-like Ras-bi 27.1 90 0.0019 23.7 3.5 29 124-152 10-38 (70)
59 KOG0430 Xanthine dehydrogenase 26.6 1.6E+02 0.0034 34.8 6.6 122 59-193 214-350 (1257)
60 PF07317 YcgR: Flagellar regul 25.2 1.3E+02 0.0029 24.9 4.5 60 65-144 4-63 (108)
61 PRK04322 peptidyl-tRNA hydrola 25.1 1.4E+02 0.0031 25.1 4.7 44 46-92 37-81 (113)
62 COG4359 Uncharacterized conser 24.5 74 0.0016 29.3 3.0 24 72-96 79-102 (220)
63 KOG3282 Uncharacterized conser 24.2 1.4E+02 0.0029 27.5 4.5 32 55-87 121-152 (190)
64 cd06397 PB1_UP1 Uncharacterize 22.8 1.3E+02 0.0028 23.7 3.5 38 186-225 40-77 (82)
65 PF14259 RRM_6: RNA recognitio 22.5 2.9E+02 0.0063 20.0 5.7 38 219-256 22-59 (70)
66 cd01817 RGS12_RBD Ubiquitin do 22.0 1.3E+02 0.0029 23.2 3.5 28 124-151 10-37 (73)
67 COG4981 Enoyl reductase domain 21.6 1.4E+02 0.003 32.2 4.7 33 56-89 149-182 (717)
68 PF15608 PELOTA_1: PELOTA RNA 20.5 1.2E+02 0.0025 25.0 3.1 36 56-92 53-89 (100)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.2e-76 Score=619.83 Aligned_cols=508 Identities=52% Similarity=0.921 Sum_probs=452.1
Q ss_pred hhhhhhhcccccccCcCCCchhhhHhhh-cCCCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHh
Q 009956 2 IACLGRFVPENDVESRAENDDVSTICKS-LGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHL 80 (521)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~ 80 (521)
+++|..+.+++++...-..+..+..+.. +.+.+++.+|+ ..+..|++||++.+...|.+|++|+|++||+++|++| +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A-~ 85 (525)
T PLN02441 8 LRLLLILFLSSLTSSVGLCSSPSSLLPKLLSLDGHLSFDP-VSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAA-Y 85 (525)
T ss_pred HHHHHHHHHHHhhhccCcccCcccccccccccCceEEeCH-HHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHH-h
Confidence 4556666666666441111222212222 12488999999 9999999999998899999999999999999999999 7
Q ss_pred --cCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCe-----eEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccc
Q 009956 81 --QSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDS-----HFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRS 153 (521)
Q Consensus 81 --~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~-----~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~ 153 (521)
+++++|++||+|||+.|++.+.+|++|||++||+. ++++|. +..+|+|++|++|.++++++.++ |++|++
T Consensus 86 ~~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~Ln~i~~~~~ii~vd~--~~~~VtV~aG~~~~dv~~~l~~~-GlaP~~ 162 (525)
T PLN02441 86 GSSSPLTVAARGHGHSLNGQAQAPGGVVVDMRSLRGGVRGPPVIVVSG--DGPYVDVSGGELWIDVLKATLKH-GLAPRS 162 (525)
T ss_pred hccCCceEEEECCCcCCCCCccCCCeEEEECCCCCCcCccCceEEEcC--CCCEEEEcCCCCHHHHHHHHHHC-CCccCC
Confidence 66999999999999999998878999999999961 367888 78999999999999999999999 999999
Q ss_pred cCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCcEEEecCCCCcchhhhhhccCccceEEEEeEEeeEecC
Q 009956 154 WTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESRQPELFFNVLGGLGQFGIITRARVLLQSAP 233 (521)
Q Consensus 154 ~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~~~~~~dl~~~~~gs~G~lGiit~~~l~l~p~p 233 (521)
++++..+||||+++|+|.|+.+.+||.+.|+|++++||+++|++++|++.+|+||||+++||+|+|||||+++||++|.|
T Consensus 163 ~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap 242 (525)
T PLN02441 163 WTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAP 242 (525)
T ss_pred ccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeCCHHHHHHHHHHHHhccCCCcccccccCeEEecCCCCccCCCCccCCCCCCCCCCCCCCCCCceEEEEEE
Q 009956 234 DKVRWIRLVYAEFDEFTRDAELLVSLKEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEV 313 (521)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 313 (521)
+.+.++.+.|.+++++.++++.++. ...+..++|++.+.+.........|.+++|.+.+..++..+. ..+.++|++|+
T Consensus 243 ~~v~~~~~~y~~~~~~~~d~~~li~-~~~~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~le~ 320 (525)
T PLN02441 243 KRVRWIRVLYSDFSTFTRDQERLIS-RPPENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLP-SDGGVLYCLEV 320 (525)
T ss_pred CceEEEEEEcCCHHHHHHHHHHHHh-cCCCCCcceEeEEEEeCCCCceeeeecccCCccccchhhccc-cCCceEEEEEE
Confidence 9988999999999999999998876 334457899999988765567788888889888877776664 45568999999
Q ss_pred eeeeCCCCCcchhHHHHHHHHhhcCCccceeeeccchhHHHHHhHHHHHHHhhhcccccCCccccccccCcchhHHHHHH
Q 009956 314 ALHYNNSDPRSAVDAVVDRLLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPHPWLNMFVSKSNLAEFNRV 393 (521)
Q Consensus 314 ~~~~~g~~~~~~v~~~~~~l~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~lw~~r~~~~d~~vp~~~l~~~~~~ 393 (521)
+.+|+.... +.+++..+++++.++...+..+..|.+|..|++|+...+...+..++|..+|||++++||.+++.+|.+.
T Consensus 321 ~~~~~~~~~-~~~~~~~~~ll~~L~~~~~~~~~~d~~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~ 399 (525)
T PLN02441 321 AKYYDEDTS-DTVDQEVESLLKRLSFIPGLLFTTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDG 399 (525)
T ss_pred EEeeCCCCc-cchhhHHHHHHhhcCCCCCCceecccCHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHH
Confidence 999987765 6788999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCcEEEEecCCCCCCCCcccccCCCceEEEEEeeCCCCCCCCcchHHHHHHHhHHHHHHHHHcCCcceec
Q 009956 394 VFNEILKDGINGPMLVYPLLRSKWDDRTSVMVPEEEIFYLVALLRFPPPHEDGASIKKLVDQNRGIVQYCKDRGFDFKLF 473 (521)
Q Consensus 394 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ehG~g~~~y 473 (521)
+.+.+..+...|++.+|||+...|+.+++...|++++.|.+..++...|+ ....+++.+.+++|+++|...|++.|.|
T Consensus 400 v~~~i~~~~~~G~~liyP~~~~~~~~~~s~~~P~~~~~y~v~~l~~~~p~--~~~~~~~~~~n~~i~~~~~~~g~~~k~Y 477 (525)
T PLN02441 400 VFKGILLDGTNGPILVYPLNRSKWDNRTSAVIPDEDIFYLVALLRSALPS--GDDLEHLLAQNKEILRFCEKAGIGVKQY 477 (525)
T ss_pred HHhhcccccCCCeEEEEecccccCCCCCccccCCCCeEEEEEEcCCCCCC--cccHHHHHHHHHHHHHHHHHcCCceEEc
Confidence 99888776667999999999999999999999999999999999977663 1278889999999999999999999999
Q ss_pred CCCCCChHHHHHhhcchhhHHHHhhhccCCCCccCCCCcccCCCCC
Q 009956 474 FPHYKSEEEWKCHFGDRWTRFRDSKKAFDPKHILAPGQKIFSRISN 519 (521)
Q Consensus 474 l~~~~~~~~~~~~yG~~~~~l~~iK~~~DP~~IlnPgk~i~~~~~~ 519 (521)
+++|..+++|++|||++|+++.+.|++|||++||+|||.||++.+.
T Consensus 478 l~~~~~~~~W~~HfG~~w~~f~~~K~~yDP~~iL~pgq~if~~~~~ 523 (525)
T PLN02441 478 LPHYTTQEEWKRHFGPKWETFVRRKAKFDPLAILSPGQRIFNRASS 523 (525)
T ss_pred CCCCCCHHHHHHHhcchHHHHHHHHhhCCchhhcCCCCccCCCCCC
Confidence 9999999999999999999999999999999999999999998764
No 2
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1.4e-66 Score=510.87 Aligned_cols=466 Identities=44% Similarity=0.765 Sum_probs=403.0
Q ss_pred chhhhHhhhcCCCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcC--CCeEEEEcCCCCCCCC
Q 009956 21 DDVSTICKSLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQS--NLTVAARGNGHSINGQ 98 (521)
Q Consensus 21 ~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~--~~~v~~~G~G~~~~g~ 98 (521)
.++.+.|.. .+.+.+.+++ ......++||+......|.+|+.|+|++||++++|.| +.. ++||.+||+|||+.|+
T Consensus 28 ~~~~~~l~~-~~~~~~~~~~-~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~-~~~~s~~pVaarG~GhSl~Gq 104 (505)
T KOG1231|consen 28 ESLKKILGN-SLEGTLESDP-SSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHC-NDYGSNFPVAARGGGHSLEGQ 104 (505)
T ss_pred cchhhhcCc-cccceeeccc-hhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHH-hccCCcceeeccCCcccccCc
Confidence 455555554 5788888888 7888899999998899999999999999999999999 888 9999999999999999
Q ss_pred CCC-CCcEEEEcCC---CCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCC
Q 009956 99 AMA-DRGLVIDMGS---TGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQ 174 (521)
Q Consensus 99 ~~~-~~gvvidl~~---l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~ 174 (521)
+.. .+|++|.|+. |++ +-.+.. ++.+|.|+||..|-+|+++++++ |+.|..+..+..+||||+++|+|.|+.
T Consensus 105 a~a~~~GvvV~m~~~~~~~~-~~~~~~--~~~yvdV~~g~~Widll~~t~e~-GL~p~swtDyl~ltVGGtlsnagiggq 180 (505)
T KOG1231|consen 105 ALATRGGVVVCMDSSLLMKD-VPVLVV--DDLYVDVSAGTLWIDLLDYTLEY-GLSPFSWTDYLPLTVGGTLSNAGIGGQ 180 (505)
T ss_pred cccCCCCeEEEEehhhccCC-Cceeec--ccceEEeeCChhHHHHHHHHHHc-CCCccCcCCccceeecceeccCccccc
Confidence 998 6997776643 454 445566 56899999999999999999999 999999988889999999999999999
Q ss_pred CcccCccccceeeeEEEecCCcEEEecCCCCcchhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHH
Q 009956 175 AFRYGPQISNVAQLDVVTGNGDMVTCSESRQPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAE 254 (521)
Q Consensus 175 ~~~~G~~~d~v~~~~~v~~~G~i~~~~~~~~~dl~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~ 254 (521)
++|||.+.+||++++||+++|++++|+...|++||++++||+|+|||||+|+++|+|+|.. |.+
T Consensus 181 afRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGglGqfGIITrArI~le~aP~~---------dQe------- 244 (505)
T KOG1231|consen 181 AFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGLGQFGIITRARIKLEPAPKR---------DQE------- 244 (505)
T ss_pred eeeccchhhceEEEEEEcCCCcEEecccccCceeeeeeeccCcceeeEEEEEEEeccCCcc---------chH-------
Confidence 9999999999999999999999999999999999999999999999999999999999974 221
Q ss_pred HHHhccCCCcccccccCeEEecCCCCccCCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeeCCCCCcchhHHHHHHHH
Q 009956 255 LLVSLKEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALHYNNSDPRSAVDAVVDRLL 334 (521)
Q Consensus 255 ~i~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~v~~~~~~l~ 334 (521)
.++.-.. .++++.++.+++.+.+..+|+..+|.+.+..+++.+ .......|++|+..||+-.+. +.+.+.+..+.
T Consensus 245 ~lis~~~---~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~-~~~~~~~yclev~ky~d~~e~-pti~~e~~~l~ 319 (505)
T KOG1231|consen 245 RLISVCG---SFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAI-NSDHSTNYCLEVAKYYDLTEA-PTLFQEIGGLS 319 (505)
T ss_pred Hhhhhhc---CCcchhhhhhhhhccccccceeeccccCcHHHHHHH-HhcCCeeeeeehhhccCcccC-chHHHHHhccc
Confidence 1211111 467888888777778888888777777665555444 334567889999998887664 77888888888
Q ss_pred hhcCCccceeeeccchhHHHHHhHHHHHHHhhhcccccCCccccccccCcchhHHHHHHHHHHhhhcCCCCcEEEEecCC
Q 009956 335 ERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPHPWLNMFVSKSNLAEFNRVVFNEILKDGINGPMLVYPLLR 414 (521)
Q Consensus 335 ~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~lw~~r~~~~d~~vp~~~l~~~~~~~~~~l~~~~~~~~i~~~~~~~ 414 (521)
+.+....+..+..+.+|..+++|++.++...+..++|.+||+|+..++|.+++.+|.+.+...++-....+...+||++.
T Consensus 320 ~~l~~~~~~~~~~~v~y~~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~~fa~gv~~dIl~~~s~g~~liyptnk 399 (505)
T KOG1231|consen 320 EKLNYAPTFIVEQDVQYHDFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRISDFARGVFTDILVPNSSGPVLIYPTNK 399 (505)
T ss_pred hhhhccchhhhhhhhHHHHhhhHhhhcccchhhcccccCCCchheeecccccchhhhhhhccceeeccCCCceEEecccc
Confidence 88888888878889999999999999999999999999999999999999999999998887666655678999999999
Q ss_pred C-CCCCCcccccC--CCceEEEEEeeCCCCCCCCcchHHHHHHHhHHHHHHHHHcCCcceecCCCCCChHHHHHhhcchh
Q 009956 415 S-KWDDRTSVMVP--EEEIFYLVALLRFPPPHEDGASIKKLVDQNRGIVQYCKDRGFDFKLFFPHYKSEEEWKCHFGDRW 491 (521)
Q Consensus 415 ~-~~~~~~~~~~~--dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ehG~g~~~yl~~~~~~~~~~~~yG~~~ 491 (521)
. .|..+++.+.| ++..+|.+..+.+..++ ..+.+++++++|+++|...|++.+.|+.++...++|+++||++|
T Consensus 400 ~~kw~~~~sav~ph~~e~vFy~v~~l~s~~~~----~~e~~~~~n~riv~fc~~ag~~~keyl~~~~~~e~w~~hfG~~w 475 (505)
T KOG1231|consen 400 DLKWSNRLSAVTPHAGEGVFYLVILLRSSGKE----EHEELEQLNDRIVKFCLAAGTCTKEYLPHYGKREYWVEHFGEKW 475 (505)
T ss_pred CcchhhhhccccccCCCceEEEEEEecCCCch----hHHHHHHHHHHHHHHHHHcCcChhhhcCCcccHHHHHHHhChhH
Confidence 8 99999998888 66677777777543221 78889999999999999999999999999999999999999999
Q ss_pred hHHHHhhhccCCCCccCCCCcccCCCC
Q 009956 492 TRFRDSKKAFDPKHILAPGQKIFSRIS 518 (521)
Q Consensus 492 ~~l~~iK~~~DP~~IlnPgk~i~~~~~ 518 (521)
..+.++|.+|||++||||||.||..+.
T Consensus 476 ~~f~~~K~~~DPk~Il~PGq~Ifq~~~ 502 (505)
T KOG1231|consen 476 VDFMRIKKAYDPKRILNPGQRIFQKPN 502 (505)
T ss_pred HHHHHHHhhcCHHHhcCCccccccCCC
Confidence 999999999999999999999997764
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=2.4e-61 Score=512.58 Aligned_cols=424 Identities=17% Similarity=0.179 Sum_probs=317.9
Q ss_pred HhhhcCCCCeEEcCCCcchhhhhcccCCCC--CCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCC-C
Q 009956 26 ICKSLGLKGSIDFGVGATNGSADKDFGGMY--SYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMA-D 102 (521)
Q Consensus 26 ~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~-~ 102 (521)
+|++ .+.++|.+|. ..+..|.+||+... ...|.+|++|+|++||+++|++| +++++||++||||||+.|++.+ .
T Consensus 101 ~L~~-~l~~~v~~~~-~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a-~~~~ipv~prGgGts~~G~~~~~~ 177 (555)
T PLN02805 101 ELKA-ILQDNMTLDY-DERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSC-NKYKVPIVPYGGATSIEGHTLAPH 177 (555)
T ss_pred HHHH-hcCCceecCH-HHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHH-HHCCCcEEEECCCCCCCCCccCCC
Confidence 5766 4456799998 88999999875322 25799999999999999999999 9999999999999999998876 4
Q ss_pred CcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCc-ccccCCCCcccccccccccccCCCCcccCcc
Q 009956 103 RGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLA-PRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQ 181 (521)
Q Consensus 103 ~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~-p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~ 181 (521)
+|++|||++||+ |+++|+ ++.+++||||+++.+|.+++.++ |++ |+++. +.+||||+++++++|..+.+||.+
T Consensus 178 ggivIdl~~mn~-I~~id~--~~~~vtVeaGv~~~~L~~~L~~~-Gl~~p~~p~--~~~TIGG~ia~n~~G~~s~~yG~~ 251 (555)
T PLN02805 178 GGVCIDMSLMKS-VKALHV--EDMDVVVEPGIGWLELNEYLEPY-GLFFPLDPG--PGATIGGMCATRCSGSLAVRYGTM 251 (555)
T ss_pred CEEEEEccCCCC-eEEEeC--CCCEEEEeCCcCHHHHHHHHHHc-CCEeCCCCc--cccChhhHhhCCCcccccCccccH
Confidence 789999999998 889999 88999999999999999999999 985 55543 368999999999999999999999
Q ss_pred ccceeeeEEEecCCcEEEecCC-----CCcchhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHH
Q 009956 182 ISNVAQLDVVTGNGDMVTCSES-----RQPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELL 256 (521)
Q Consensus 182 ~d~v~~~~~v~~~G~i~~~~~~-----~~~dl~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i 256 (521)
+|+|+++++|++||++++++.. .++||+|+++||+|+|||||+++||+.|.|+......+.|++++++.+++..+
T Consensus 252 ~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 252 RDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred HHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHH
Confidence 9999999999999999987532 46899999999999999999999999999999888899999999999999998
Q ss_pred HhccCCCcccccccCeEEecCCCCccCCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeeCCCCCcchhHHHHHHHHhh
Q 009956 257 VSLKEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALHYNNSDPRSAVDAVVDRLLER 336 (521)
Q Consensus 257 ~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~v~~~~~~l~~~ 336 (521)
.+.+..|+++|++|...+...+.. .. ..+|. .+++++| ++|.+ ++++++.+.+.+.
T Consensus 332 ~~~g~~psa~ElmD~~~~~~~~~~---------~~------~~~p~---~~~Ll~e----~~g~~--~~~~~~~~~~~~i 387 (555)
T PLN02805 332 MLSGIQVSRVELLDEVQIRAINMA---------NG------KNLPE---APTLMFE----FIGTE--AYAREQTLIVQKI 387 (555)
T ss_pred HhCCCCcEEEEEECHHHHHHHHHh---------cC------CCCCc---ceEEEEE----EecCc--HHHHHHHHHHHHH
Confidence 888888999999998643211010 00 11322 3667788 56655 4455555444433
Q ss_pred cCCccce--eeeccch-hH-HHHHhHHHHHHHhh-hcccccCCccccccccCcchhHHHHHHHHHHhhhcCCCCcEEEEe
Q 009956 337 LGFVSKL--NFQVDVS-YV-DFLLRVKQVEEHAR-ANGMWDSPHPWLNMFVSKSNLAEFNRVVFNEILKDGINGPMLVYP 411 (521)
Q Consensus 337 ~~~~~g~--~~~~d~~-~~-~~~~~~~~~~~~~~-~~~lw~~r~~~~d~~vp~~~l~~~~~~~~~~l~~~~~~~~i~~~~ 411 (521)
+....+. ....+.. .. -|..|-........ ....|. -..|++||+++++++++.+.+ +++... -.+.
T Consensus 388 ~~~~g~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~---~~~DvaVP~s~L~e~i~~~~~-~~~~~~-~~~~--- 459 (555)
T PLN02805 388 ASKHNGSDFVFAEEPEAKKELWKIRKEALWACFAMEPKYEA---MITDVCVPLSHLAELISRSKK-ELDASP-LVCT--- 459 (555)
T ss_pred HHhCCCceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCCce---eEEEEEEEHHHHHHHHHHHHH-HHHHcC-CeEE---
Confidence 3221121 1112211 11 12211111000000 001000 124999999999999999984 544321 1222
Q ss_pred cCCCCCCCCcccccCCCceEEEEEeeCCCCCCCCcc-hHHHHHHHhHHHHH--------HHHHcCCcc--eecCCCCCCh
Q 009956 412 LLRSKWDDRTSVMVPEEEIFYLVALLRFPPPHEDGA-SIKKLVDQNRGIVQ--------YCKDRGFDF--KLFFPHYKSE 480 (521)
Q Consensus 412 ~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~--------~~~ehG~g~--~~yl~~~~~~ 480 (521)
..+|++||++|+++.+.. +.+ ..+++.++.+++++ +++|||+|+ ++|+..++++
T Consensus 460 ---------~~gHaGdGnlH~~i~~~~------~~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~ 524 (555)
T PLN02805 460 ---------VIAHAGDGNFHTIILFDP------SQEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGI 524 (555)
T ss_pred ---------EEEEcCCCcEEEEeccCC------CCHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCH
Confidence 338999999999986532 112 44555666666665 678999998 6888766666
Q ss_pred HHHHHhhcchhhHHHHhhhccCCCCccCCCCcc
Q 009956 481 EEWKCHFGDRWTRFRDSKKAFDPKHILAPGQKI 513 (521)
Q Consensus 481 ~~~~~~yG~~~~~l~~iK~~~DP~~IlnPgk~i 513 (521)
.. ++.|++||++|||+|||||||.+
T Consensus 525 ~~--------~~lm~~IK~a~DP~gILNPGKi~ 549 (555)
T PLN02805 525 EA--------LQTMKRIKKALDPNNIMNPGKLI 549 (555)
T ss_pred HH--------HHHHHHHHHHhCcCcCCCCCcee
Confidence 55 79999999999999999999654
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=2.2e-60 Score=503.17 Aligned_cols=430 Identities=15% Similarity=0.201 Sum_probs=329.4
Q ss_pred hhhHhhhcCCCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCC-
Q 009956 23 VSTICKSLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMA- 101 (521)
Q Consensus 23 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~- 101 (521)
+-++|++....+.|.++. +.+..|++|++..+...|.+|++|+|++||+++|++| +++++||++||+|||+.|++.+
T Consensus 21 ~~~~l~~~~g~~~v~~~~-~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a-~~~~ipv~~rG~Gt~~~gg~~~~ 98 (499)
T PRK11230 21 LLMALREHLPGLEILHTD-EELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVC-HRLRVPVVARGAGTGLSGGALPL 98 (499)
T ss_pred HHHHHHHhcCcceEEcCH-HHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHH-HHcCCeEEEECCCcCcCCCcccC
Confidence 444788866777899999 8899999998666889999999999999999999999 9999999999999999888876
Q ss_pred CCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCc-ccccCCCCcccccccccccccCCCCcccCc
Q 009956 102 DRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLA-PRSWTDYLRLTVGGTLSNAGVSGQAFRYGP 180 (521)
Q Consensus 102 ~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~-p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~ 180 (521)
.+|++|||++||+ |+++|+ ++.+++||||+++.+|.+++.++ |++ |+++++...+||||+++++++|..+.+||.
T Consensus 99 ~~gividl~~ln~-I~~id~--~~~~v~VeaGv~~~~L~~~l~~~-Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~ 174 (499)
T PRK11230 99 EKGVLLVMARFNR-ILDINP--VGRRARVQPGVRNLAISQAAAPH-GLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGL 174 (499)
T ss_pred CCcEEEEcccCCC-ceEEcC--CCCEEEEcCCccHHHHHHHHHHc-CCeeCCCCCccccceEcceeccCCCCccceeeCC
Confidence 3789999999998 889999 88999999999999999999999 986 777777778999999999888999999999
Q ss_pred cccceeeeEEEecCCcEEEecCC----CCcchhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHH
Q 009956 181 QISNVAQLDVVTGNGDMVTCSES----RQPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELL 256 (521)
Q Consensus 181 ~~d~v~~~~~v~~~G~i~~~~~~----~~~dl~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i 256 (521)
++|+|++++||++||++++++.. .++||+++++||+|+|||||+++||+.|.|+....+.+.|++.+++.+++..+
T Consensus 175 ~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 175 TVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred hhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999999753 47899999999999999999999999999999888899999999999999999
Q ss_pred HhccCCCcccccccCeEEecCCCCccCCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeeCCCCCcchhHHHHHHHHhh
Q 009956 257 VSLKEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALHYNNSDPRSAVDAVVDRLLER 336 (521)
Q Consensus 257 ~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~v~~~~~~l~~~ 336 (521)
.+....|..+|++|...+...+.. + . ...|.+ ..+++++| +++.+ ++++++++.+.+.
T Consensus 255 ~~~~~~p~~~el~d~~~~~~~~~~--------~-~------~~~p~~-~~~~ll~e----~~g~~--~~v~~~~~~l~~~ 312 (499)
T PRK11230 255 IAAGIIPGGLEMMDNLSIRAAEDF--------I-H------AGYPVD-AEAILLCE----LDGVE--SDVQEDCERVNDI 312 (499)
T ss_pred HhcCCCcEEEEeeCHHHHHHHHHh--------c-C------CCCCCC-cceEEEEE----ecCCc--hHHHHHHHHHHHH
Confidence 888888999999987654211111 0 0 112222 23667777 56655 4566666666555
Q ss_pred cCCccc--eeeeccch-hH-HHHHhHHHHHHHhhh--cccccCCccccccccCcchhHHHHHHHHHHhhhcCCCCcEEEE
Q 009956 337 LGFVSK--LNFQVDVS-YV-DFLLRVKQVEEHARA--NGMWDSPHPWLNMFVSKSNLAEFNRVVFNEILKDGINGPMLVY 410 (521)
Q Consensus 337 ~~~~~g--~~~~~d~~-~~-~~~~~~~~~~~~~~~--~~lw~~r~~~~d~~vp~~~l~~~~~~~~~~l~~~~~~~~i~~~ 410 (521)
+....+ .....+.. .. -|..|... ...... ...| ..|++||+++++++++.+.+ +.+... -.+.
T Consensus 313 ~~~~g~~~~~~a~~~~~~~~~W~~R~~~-~~~~~~~~~~~~-----~~dv~vP~~~l~~~~~~~~~-~~~~~~-~~~~-- 382 (499)
T PRK11230 313 LLKAGATDVRLAQDEAERVRFWAGRKNA-FPAVGRISPDYY-----CMDGTIPRRELPGVLEGIAR-LSQQYG-LRVA-- 382 (499)
T ss_pred HHhcCCceEEEeCCHHHHHHHHHHHHhh-HHHHHhhCCCee-----EEeecCChHHHHHHHHHHHH-HHHHcC-CeEE--
Confidence 532221 11112211 11 22222111 111110 0111 24899999999999999884 544321 1111
Q ss_pred ecCCCCCCCCcccccCCCceEEEEEeeCCCCCCCCcc-hHHHHHHHhHHHHH--------HHHHcCCcc--eecCCCCCC
Q 009956 411 PLLRSKWDDRTSVMVPEEEIFYLVALLRFPPPHEDGA-SIKKLVDQNRGIVQ--------YCKDRGFDF--KLFFPHYKS 479 (521)
Q Consensus 411 ~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~--------~~~ehG~g~--~~yl~~~~~ 479 (521)
..+|+++|++|+++.... +.+ ..+++.++.+.+++ +++|||+|+ ++|+...++
T Consensus 383 ----------~~gH~GdGn~H~~i~~~~------~~~~~~~~~~~~~~~l~~~~~~~GG~is~EHGiG~~k~~~l~~~~g 446 (499)
T PRK11230 383 ----------NVFHAGDGNMHPLILFDA------NEPGELERAEALGGKILELCVEVGGSITGEHGVGREKINQMCAQFN 446 (499)
T ss_pred ----------EEEEeCCCcceeeecCCC------CCHHHHHHHHHHHHHHHHHHHHcCCeEeeeccCchhhHHHHHHhcC
Confidence 348999999999876542 112 34455556656665 778999998 577755444
Q ss_pred hHHHHHhhcchhhHHHHhhhccCCCCccCCCCccc
Q 009956 480 EEEWKCHFGDRWTRFRDSKKAFDPKHILAPGQKIF 514 (521)
Q Consensus 480 ~~~~~~~yG~~~~~l~~iK~~~DP~~IlnPgk~i~ 514 (521)
+.. ++.|++||++|||+|||||||.+.
T Consensus 447 ~~~--------~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 447 SDE--------ITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHH--------HHHHHHHHHHcCCCcCCCCCeEeC
Confidence 444 799999999999999999997664
No 5
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=1.5e-54 Score=451.96 Aligned_cols=391 Identities=18% Similarity=0.271 Sum_probs=293.8
Q ss_pred EEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCC-CcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHH
Q 009956 62 VIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMAD-RGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVL 140 (521)
Q Consensus 62 vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~-~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~ 140 (521)
|++|+|++||+++|++| +++++|++++|+|||+.|++.+. ++++|||++||+ |+++|+ ++.+++||||+++.+|.
T Consensus 1 Vv~P~s~eev~~iv~~a-~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~-i~~id~--~~~~v~veaGv~~~~l~ 76 (413)
T TIGR00387 1 VVFPKNTEQVARILKLC-HEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNK-ILEIDV--VNLTAVVQPGVRNLELE 76 (413)
T ss_pred CCCCCCHHHHHHHHHHH-HHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCc-eeEEcC--CCCEEEEcCCccHHHHH
Confidence 68999999999999999 99999999999999998887764 789999999998 889999 88999999999999999
Q ss_pred HHHHHhCCCc-ccccCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCcEEEecCC-----CCcchhhhhhc
Q 009956 141 KRCVEDFGLA-PRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSES-----RQPELFFNVLG 214 (521)
Q Consensus 141 ~~~~~~~g~~-p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~~~-----~~~dl~~~~~g 214 (521)
+++.++ |++ |+++++...+||||+++++++|..+.+||.++|+|+++++|++||++++++.. .++|++++++|
T Consensus 77 ~~l~~~-gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~G 155 (413)
T TIGR00387 77 QAVEEH-NLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVG 155 (413)
T ss_pred HHHHHc-CCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhccc
Confidence 999999 986 56777777899999999988899999999999999999999999999998642 46799999999
Q ss_pred cCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHhccCCCcccccccCeEEecCCCCccCCCCccCCCCCC
Q 009956 215 GLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLKEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQV 294 (521)
Q Consensus 215 s~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 294 (521)
|+|+|||||+++||++|.|+......+.|++++++.+++..+.+....|+++|++|...+...... ..
T Consensus 156 s~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~a~el~d~~~~~~~~~~---------~~--- 223 (413)
T TIGR00387 156 SEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAAGIIPAGMEFLDNLSIKAVEDI---------SG--- 223 (413)
T ss_pred CCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEccCHHHHHHHHHh---------cC---
Confidence 999999999999999999999888899999999999999999888888999999987653211010 00
Q ss_pred CCCCCCCCCCCceEEEEEEeeeeCCCCCcchhHHHHHHHHhhcCCccce--eeeccc-hhHH-HHHhHHHHHHHhhhccc
Q 009956 295 FDPAHLPQTAGSVLYCLEVALHYNNSDPRSAVDAVVDRLLERLGFVSKL--NFQVDV-SYVD-FLLRVKQVEEHARANGM 370 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~v~~~~~~l~~~~~~~~g~--~~~~d~-~~~~-~~~~~~~~~~~~~~~~l 370 (521)
..+|.+ ...+++++ +++.. ++++++++++.+.+....+. ....+. .... |..|...... .....
T Consensus 224 ---~~~p~~-~~~~l~v~----~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~-~~~~~- 291 (413)
T TIGR00387 224 ---IGLPKD-AGAILLVE----IDGVH--EAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKA-ASKLS- 291 (413)
T ss_pred ---CCCCCC-CceEEEEE----ecCCc--HHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHH-HHhhC-
Confidence 123322 23566677 56655 45666666665554322221 111111 1122 2222111111 11000
Q ss_pred ccCCccccccccCcchhHHHHHHHHHHhhhcCCCCcEEEEecCCCCCCCCcccccCCCceEEEEEeeCCCCCCCCcc-hH
Q 009956 371 WDSPHPWLNMFVSKSNLAEFNRVVFNEILKDGINGPMLVYPLLRSKWDDRTSVMVPEEEIFYLVALLRFPPPHEDGA-SI 449 (521)
Q Consensus 371 w~~r~~~~d~~vp~~~l~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~ 449 (521)
...-+.|++||+++++++++.+.+.+.+.+. ... +.+|+++|++|+++.+.. ..+ ..
T Consensus 292 --~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~~--~~~------------~~gH~g~g~lh~~~~~~~------~~~~~~ 349 (413)
T TIGR00387 292 --PLYLIEDGTVPRSKLPEALRGIADIARKYDF--TIA------------NFGHAGDGNLHPTILTDP------EDKGEM 349 (413)
T ss_pred --CCcceeEEecCHHHHHHHHHHHHHHHHHcCC--eEE------------EEEEecCCccccccCCCC------CCHHHH
Confidence 0112358999999999999998843333321 122 348999999999866432 112 34
Q ss_pred HHHHHHhHHHHH--------HHHHcCCcc--eecCCCCCChHHHHHhhcchhhHHHHhhhccCCCCccCCCC
Q 009956 450 KKLVDQNRGIVQ--------YCKDRGFDF--KLFFPHYKSEEEWKCHFGDRWTRFRDSKKAFDPKHILAPGQ 511 (521)
Q Consensus 450 ~~~~~~~~~i~~--------~~~ehG~g~--~~yl~~~~~~~~~~~~yG~~~~~l~~iK~~~DP~~IlnPgk 511 (521)
+++.++.+.+++ +++|||+|+ ++|+..+.++.. ++.|++||++|||+|||||||
T Consensus 350 ~~~~~~~~~~~~~~~~~gG~is~eHG~G~~r~~~~~~~~~~~~--------~~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 350 ERVEEAGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKE--------LETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeccCcHhHHHHHHHhcCHHH--------HHHHHHHHHHcCcCcCCCCcC
Confidence 455556666665 667899998 678766555544 799999999999999999996
No 6
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=5.4e-53 Score=404.93 Aligned_cols=427 Identities=19% Similarity=0.255 Sum_probs=329.4
Q ss_pred chhhhHhhhcCCCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCC
Q 009956 21 DDVSTICKSLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAM 100 (521)
Q Consensus 21 ~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~ 100 (521)
+|++ -+++......+.++. +++..|.+||.+.++++...|..|.|++||++|+++| ++.++.|+|+||.|++.|++.
T Consensus 54 ~Dl~-~Fk~iLg~d~~~~~~-edL~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYC-n~~kLAVVPQGGNTgLVGgSV 130 (511)
T KOG1232|consen 54 KDLA-YFKSILGKDEVSTDK-EDLENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYC-NDRKLAVVPQGGNTGLVGGSV 130 (511)
T ss_pred HHHH-HHHHHhcccccccCh-HHHhhhhhHHHHhccCCceEEecCCCHHHHHHHHHhh-ccccEEEecCCCCcccccCcc
Confidence 6666 777777788889998 8999999999999999999999999999999999999 999999999999999999999
Q ss_pred CC-CcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCC-cccccCCCCcccccccccccccCCCCccc
Q 009956 101 AD-RGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGL-APRSWTDYLRLTVGGTLSNAGVSGQAFRY 178 (521)
Q Consensus 101 ~~-~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~-~p~~~~~~~~~tvGG~~~~~g~g~~~~~~ 178 (521)
|. +.|||+|.+||+ +.++|+ -.+++.++|||.+.++.+++.++ |+ +|.+.++-.+|.|||.+++++.|-+-.||
T Consensus 131 PvfDEiVlsl~~mNK-i~sfDe--vsGil~cdaG~ILen~d~~l~e~-g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRY 206 (511)
T KOG1232|consen 131 PVFDEIVLSLGLMNK-ILSFDE--VSGILKCDAGVILENADNFLAEK-GYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRY 206 (511)
T ss_pred cchHHHhhhhhhhcc-cccccc--ccceEEeccceEehhhHHHHHhc-CceeeecCCCcccceecceeeccCCceEEEEe
Confidence 85 889999999998 999999 78999999999999999999999 88 59999999999999999988879899999
Q ss_pred CccccceeeeEEEecCCcEEEecC-----CCCcchhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHH
Q 009956 179 GPQISNVAQLDVVTGNGDMVTCSE-----SRQPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDA 253 (521)
Q Consensus 179 G~~~d~v~~~~~v~~~G~i~~~~~-----~~~~dl~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~ 253 (521)
|+..-+|+++|+|+|+|+++..-. ..+.|+.++|+||+|++||||.+++-+.|.|+.+...++..+++++..+..
T Consensus 207 GsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 207 GSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred cccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHH
Confidence 999999999999999999987642 255799999999999999999999999999998888888888888876654
Q ss_pred HHHHhc-cCCCcccccccCeEEecCCCCccCCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeeCCCCCcchhHHHHHH
Q 009956 254 ELLVSL-KEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALHYNNSDPRSAVDAVVDR 332 (521)
Q Consensus 254 ~~i~~~-~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~v~~~~~~ 332 (521)
....+. ...-+++|+||...+...... +. .+..+-++..+.++++|-. |+.. +.=++++.+
T Consensus 287 v~Aks~L~EILSafElmD~~s~~~~~~~--------l~-----~l~~pl~~~~pFyiLiETs----GSn~-dhD~eKl~a 348 (511)
T KOG1232|consen 287 VEAKSNLTEILSAFELMDNASMELVLEY--------LK-----DLHFPLEDEHPFYILIETS----GSNK-DHDEEKLTA 348 (511)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHH--------hc-----cCCCCccCCCceEEEEEec----CCCc-cccHHHHHH
Confidence 433322 233346677765543111000 11 1111113335567778843 3332 233455666
Q ss_pred HHhhcCCccceeeeccchhHHHHHhHHHHHHHhhhcccccCCccc------------cccccCcchhHHHHHHHHHHhhh
Q 009956 333 LLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPHPW------------LNMFVSKSNLAEFNRVVFNEILK 400 (521)
Q Consensus 333 l~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~lw~~r~~~------------~d~~vp~~~l~~~~~~~~~~l~~ 400 (521)
.++.. .+.+.. .|. ..+.+..+...+|.+|+.. .|+++|.+.+-++++.+.+++..
T Consensus 349 fl~d~-lek~lI--sDG---------v~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~ 416 (511)
T KOG1232|consen 349 FLEDC-LEKGLI--SDG---------VLAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGE 416 (511)
T ss_pred HHHHh-hhhccc--ccc---------eecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHHHhhhh
Confidence 65554 223332 221 1334555667889888753 39999999999999988865543
Q ss_pred cCCCCcEEEEecCCCCCCCCcccccCCCceEEEEEeeCCCCCCCCcchHHHHHHH-hHHHHH--------HHHHcCCcc-
Q 009956 401 DGINGPMLVYPLLRSKWDDRTSVMVPEEEIFYLVALLRFPPPHEDGASIKKLVDQ-NRGIVQ--------YCKDRGFDF- 470 (521)
Q Consensus 401 ~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~--------~~~ehG~g~- 470 (521)
...-+.++- .||++|||+|.++.... .-++++++ .-.+++ +++|||+|.
T Consensus 417 ~~l~~d~~g------------yGHlGDgNlHLNia~~e---------fn~~iek~lePfvYE~vs~~~GSISAEHGiG~l 475 (511)
T KOG1232|consen 417 AALVGDIVG------------YGHLGDGNLHLNIAVRE---------FNKEIEKLLEPFVYEWVSKHKGSISAEHGIGFL 475 (511)
T ss_pred hhhhhcccc------------cccccCCceeEeeeHHH---------HhHHHHHhhhhHHHHHHHhcCCceecccccccc
Confidence 222222222 39999999999998652 11222222 222333 788999998
Q ss_pred -eecCCCCCChHHHHHhhcchhhHHHHhhhccCCCCccCCCCcc
Q 009956 471 -KLFFPHYKSEEEWKCHFGDRWTRFRDSKKAFDPKHILAPGQKI 513 (521)
Q Consensus 471 -~~yl~~~~~~~~~~~~yG~~~~~l~~iK~~~DP~~IlnPgk~i 513 (521)
++|+....++++ ...|+.+|+.|||++||||-|.|
T Consensus 476 Kk~~~~ysKspe~--------i~lmk~lKn~~DPngILnPYK~i 511 (511)
T KOG1232|consen 476 KKPYLHYSKSPEE--------ILLMKDLKNLFDPNGILNPYKYI 511 (511)
T ss_pred ccCccccCCCHHH--------HHHHHHHHhhcCCcccCCccccC
Confidence 799988899998 59999999999999999999764
No 7
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.6e-46 Score=399.49 Aligned_cols=425 Identities=22% Similarity=0.280 Sum_probs=298.1
Q ss_pred CCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCC
Q 009956 32 LKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGS 111 (521)
Q Consensus 32 ~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~ 111 (521)
....+.++. .....|..||+ .+...|.+|++|+|++||+++|++| +++++||+|||+|||+.|++.+.+|++|||++
T Consensus 7 ~~~~~~~~~-~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a-~~~~~~v~prG~gts~~g~~~~~~gvvl~l~~ 83 (459)
T COG0277 7 GELNVLTDP-ADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLA-NENGIPVVPRGGGTSLSGGAVPDGGVVLDLSR 83 (459)
T ss_pred CccceecCH-HHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHH-HHcCCeEEEECCCCCccccccCCCcEEEEchh
Confidence 344577788 78889999998 6889999999999999999999999 99999999999999999999874599999999
Q ss_pred CCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCccc-ccCCCCcccccccccccccCCCCcccCccccceeeeEE
Q 009956 112 TGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPR-SWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDV 190 (521)
Q Consensus 112 l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~-~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~ 190 (521)
||+ |+++|+ ++.+++||||+++.+|.+++.++ |++++ ++++...+||||+++++++|.++.+||.++|+|+++++
T Consensus 84 mn~-i~~id~--~~~~~~v~aGv~l~~l~~~l~~~-G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~v 159 (459)
T COG0277 84 LNR-ILEIDP--EDGTATVQAGVTLEDLEKALAPH-GLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRV 159 (459)
T ss_pred hcc-hhccCc--CCCEEEEcCCccHHHHHHHHHHc-CCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEE
Confidence 998 789999 88999999999999999999999 99755 45444589999999999999999999999999999999
Q ss_pred EecCCcEEEecCC-----CCcchhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHH----hccC
Q 009956 191 VTGNGDMVTCSES-----RQPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLV----SLKE 261 (521)
Q Consensus 191 v~~~G~i~~~~~~-----~~~dl~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~----~~~~ 261 (521)
|++||++++++.. .++||+++++||+|+|||||+++||+.|.|+........+++.+.+........ ....
T Consensus 160 V~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
T COG0277 160 VLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGV 239 (459)
T ss_pred EcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCC
Confidence 9999999999873 447999999999999999999999999999998888888898887765333222 1223
Q ss_pred CCcccccccCeEEecCCCCccCCCCccCCCCCCCCCCCCCCCCCceEEEEEEeeeeCCCCCcchhHHHHHHHHhhcCCcc
Q 009956 262 ERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLEVALHYNNSDPRSAVDAVVDRLLERLGFVS 341 (521)
Q Consensus 262 ~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~v~~~~~~l~~~~~~~~ 341 (521)
.+...++++.. ......+ ... ..++... ...+++++ .+... ..+......+.+.+....
T Consensus 240 ~~~~~e~~~~~-~~~~~~~--------~~~------~~~~~~~-~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~ 298 (459)
T COG0277 240 IPAALEFMDRP-IKAAEAY--------LGG------GALPLEA-PARLLVEV----EGSDE-AAVDEALEALGELLLEHG 298 (459)
T ss_pred Cceeeeecchh-HHHHHHh--------ccc------cCCCCCC-ceEEEEEE----cCCcH-HHHHHHHHHHHHHHHhcC
Confidence 45566776653 1000010 000 0121211 14455663 33332 344555555544331111
Q ss_pred ---ceeeeccc-hhHHHHHhHHHHHHHhhhcccccCCccccccccCcchhHHHHHHHHHHhhhcCCC-CcEEEEecCCCC
Q 009956 342 ---KLNFQVDV-SYVDFLLRVKQVEEHARANGMWDSPHPWLNMFVSKSNLAEFNRVVFNEILKDGIN-GPMLVYPLLRSK 416 (521)
Q Consensus 342 ---g~~~~~d~-~~~~~~~~~~~~~~~~~~~~lw~~r~~~~d~~vp~~~l~~~~~~~~~~l~~~~~~-~~i~~~~~~~~~ 416 (521)
......+. ....++......... ...+.....+.|+++|.+++.+++..+.. +...... -.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~~~~d~~vp~~~~~~~~~~~~~-~~~~~~~~~~~--------- 365 (459)
T COG0277 299 LARDLVVAQDLAEAARLWLARKGALAA---AGALGPGVIQEDVVVPLEALPEFLREILA-LLDKAGLALRV--------- 365 (459)
T ss_pred CceeEEEeCCHHHHHHHHHHHHHHHHH---HHhhCCCccccceeeeHHHHHHHHHHHHH-HHHhcCCCcee---------
Confidence 11111111 111121111100000 01111002345899999999999998884 4433221 111
Q ss_pred CCCCcccccCCCceEEEEEeeCCCCCCCCcchHHHHHHHhHHHHH--------HHHHcCCcc--eecCCCCCChHHHHHh
Q 009956 417 WDDRTSVMVPEEEIFYLVALLRFPPPHEDGASIKKLVDQNRGIVQ--------YCKDRGFDF--KLFFPHYKSEEEWKCH 486 (521)
Q Consensus 417 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~ehG~g~--~~yl~~~~~~~~~~~~ 486 (521)
..++|.+|+++|+.+..... . +....+...+..+.+.+ ++++||+|. ..|+..+.+
T Consensus 366 ---~~~~~~~dg~~~~~~~~~~~-~---~~~~~~~~~~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~------- 431 (459)
T COG0277 366 ---ALFGHAGDGNLHLNILYDVG-D---EAEELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPG------- 431 (459)
T ss_pred ---eeecccCCCcceeeeccCCC-c---cHHHHHHHHHHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHh-------
Confidence 24589999999999887642 1 01144445555666655 445676665 445443333
Q ss_pred hcchhhHHHHhhhccCCCCccCCCCcc
Q 009956 487 FGDRWTRFRDSKKAFDPKHILAPGQKI 513 (521)
Q Consensus 487 yG~~~~~l~~iK~~~DP~~IlnPgk~i 513 (521)
+.|++|+++|++|||+|||||||.+
T Consensus 432 --~~~~~~~~~k~~~DP~~i~npg~~~ 456 (459)
T COG0277 432 --EAWALLRAIKRAFDPNGIFNPGKLF 456 (459)
T ss_pred --HHHHHHHHHHHhcCCCCCCCCCccC
Confidence 4479999999999999999999654
No 8
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=100.00 E-value=5.2e-45 Score=350.54 Aligned_cols=433 Identities=14% Similarity=0.167 Sum_probs=316.7
Q ss_pred ccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCC-CCCCC----cEEEEcCCCCCeeEEEeccCC
Q 009956 50 DFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQ-AMADR----GLVIDMGSTGDSHFEIVKVKG 124 (521)
Q Consensus 50 ~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~-~~~~~----gvvidl~~l~~~~i~id~~~~ 124 (521)
-|-+.+...|+.|+.|++.+||.++|+.| .++++-++|.|||||.++. ..|.. -+.+||+.||+ ++.+|. +
T Consensus 152 Lregkf~RiPDiVvWP~chdevVkiv~lA-~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnr-iLWidr--e 227 (613)
T KOG1233|consen 152 LREGKFPRIPDIVVWPKCHDEVVKIVELA-MKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNR-ILWIDR--E 227 (613)
T ss_pred HhcCccCCCCceEecccchHHHHHHHHHH-hhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhh-eeEecc--c
Confidence 34456889999999999999999999999 9999999999999998754 34432 26689999999 999999 8
Q ss_pred ceEEEEeCCccHHHHHHHHHHhCCCc-ccccCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCcEEEec-C
Q 009956 125 STYLDVSGGALWEDVLKRCVEDFGLA-PRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCS-E 202 (521)
Q Consensus 125 ~~~v~v~aG~~~~~l~~~~~~~~g~~-p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~-~ 202 (521)
+.++++|+|++..+|.+.+.+. |+. ...+-+...+|+||++++.++|+.--.||++.|.|+.+++|+|.|.+.+.- .
T Consensus 228 NLT~~~eaGIvGQ~LERqL~~~-G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~ 306 (613)
T KOG1233|consen 228 NLTCRAEAGIVGQSLERQLNKK-GFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQV 306 (613)
T ss_pred cceEEEecCcchHHHHHHHhhc-CcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcC
Confidence 8999999999999999999999 995 566777788999999999999999999999999999999999999876532 1
Q ss_pred ---CCCcchhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHhccCCCcccccccCeEEecCCC
Q 009956 203 ---SRQPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLKEERESFDYVEGFVFVNSDD 279 (521)
Q Consensus 203 ---~~~~dl~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~d~~~~~~~~~ 279 (521)
+.+||+.+...||+||||||||+++|++|+|+..++..+.||++++.....+++...+-+|+++++||...++..+.
T Consensus 307 PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA~qRCqPAS~RLMDN~QF~fGqA 386 (613)
T KOG1233|consen 307 PRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVAIQRCQPASLRLMDNDQFVFGQA 386 (613)
T ss_pred CcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHHHHhcCchheeeecccceecccc
Confidence 47899999999999999999999999999999999999999999999999999988888899999999999876655
Q ss_pred Cc---cCCCCccCCC---CCCCCCCCCCCCCCceEEEEEEeeeeCCCCCcchhHHHHHHHHhhcCCccceeeeccchhHH
Q 009956 280 TV---NGWPSVPLDP---AQVFDPAHLPQTAGSVLYCLEVALHYNNSDPRSAVDAVVDRLLERLGFVSKLNFQVDVSYVD 353 (521)
Q Consensus 280 ~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~~~v~~~~~~l~~~~~~~~g~~~~~d~~~~~ 353 (521)
+- ..|+..+... --..+++++....-.+ .++.|+|+. +++++..+.+.+......|+....+.....
T Consensus 387 LKp~~~Swwas~~d~~kk~YiTswKGfd~nqica-----ATllfEGdr--e~V~qhE~~~y~iAekF~G~~aG~~NGqrG 459 (613)
T KOG1233|consen 387 LKPASDSWWASLKDSVKKMYITSWKGFDVNQICA-----ATLLFEGDR--EEVDQHEERLYKIAEKFHGVVAGAENGQRG 459 (613)
T ss_pred cCcchhhHHHHHHHHHhhheeecccCcCHhhhhh-----hhheecccH--HHHHHHHHHHHHHHHHhCCccccccccccc
Confidence 52 2332211100 0012233332221111 122277876 678877777665554555655444432333
Q ss_pred HHHhHHHHHHHhhhcccccCCccccccccCcchhHHHHHHHHHHhhhcCCCCcEEEEecCCCCCCCCcccccCC-CceEE
Q 009956 354 FLLRVKQVEEHARANGMWDSPHPWLNMFVSKSNLAEFNRVVFNEILKDGINGPMLVYPLLRSKWDDRTSVMVPE-EEIFY 432 (521)
Q Consensus 354 ~~~~~~~~~~~~~~~~lw~~r~~~~d~~vp~~~l~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~d-g~~~~ 432 (521)
|...+.+++.+.-.-....+.+++ ++++||+++..++..+.+.+.++.....+...++.. + +....+.. .++||
T Consensus 460 Y~LTfvIAYiRDlgl~~gvlgESF-ETSvPWDrv~~LCRnVKer~~rEck~~gv~~~~~s~-C---RVTQtYDAGACiYF 534 (613)
T KOG1233|consen 460 YRLTFVIAYIRDLGLNHGVLGESF-ETSVPWDRVLSLCRNVKERMKRECKAQGVTHPVLSN-C---RVTQTYDAGACIYF 534 (613)
T ss_pred eEEEEeHHHHHhhcccccchhhcc-cccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-e---eEEEEecCceEEEE
Confidence 333334444443333333444454 899999999999999886665432111111111111 1 11122322 46777
Q ss_pred EEEeeCCCCCCCCcc--hHHHHH-HHhHHHHH----HHHHcCCcc--eecCCCCCChHHHHHhhcchhhHHHHhhhccCC
Q 009956 433 LVALLRFPPPHEDGA--SIKKLV-DQNRGIVQ----YCKDRGFDF--KLFFPHYKSEEEWKCHFGDRWTRFRDSKKAFDP 503 (521)
Q Consensus 433 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~i~~----~~~ehG~g~--~~yl~~~~~~~~~~~~yG~~~~~l~~iK~~~DP 503 (521)
.|.+...... ++ -.++++ +++++|+. ++|+||+|+ +.||....++.. +.+++++|+.+||
T Consensus 535 YFgFn~rg~~---dplevfe~iE~aARdEIlacGGSlSHHHGVGKiRkqW~~~~~~~vG--------~~llka~K~~lDP 603 (613)
T KOG1233|consen 535 YFGFNARGLK---DPLEVFERIETAARDEILACGGSLSHHHGVGKIRKQWMLTTNGAVG--------IALLKAIKSELDP 603 (613)
T ss_pred EEeeccccCC---chHHHHHHHHHHhHHHHHhcCCcccccccchHHHHHHHHhhhhhHh--------HHHHHHHHHhcCh
Confidence 7776643222 22 455554 55777777 999999999 778876666666 6999999999999
Q ss_pred CCccCCC
Q 009956 504 KHILAPG 510 (521)
Q Consensus 504 ~~IlnPg 510 (521)
+|||..+
T Consensus 604 ~NIFa~~ 610 (613)
T KOG1233|consen 604 ANIFASA 610 (613)
T ss_pred hhhcccc
Confidence 9999987
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=1.8e-38 Score=319.35 Aligned_cols=185 Identities=15% Similarity=0.162 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEEcCCCC-CCCCCCCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHHHHHHH
Q 009956 67 GADDVAVVIKAAHLQSNLTVAARGNGHS-INGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVE 145 (521)
Q Consensus 67 s~~ev~~~v~~a~~~~~~~v~~~G~G~~-~~g~~~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~ 145 (521)
.++||+++|++| +++++||+++|+||+ ..|. . ..+++|||++||+ |+++|+ ++.+|+|+||+++.+|.+++.+
T Consensus 3 ~~~ev~~~v~~A-~~~~~~v~~~GgGt~~~~g~-~-~~~~vldl~~ln~-Ile~d~--~~~~vtV~AG~~l~el~~~L~~ 76 (352)
T PRK11282 3 ISAALLERVRQA-AADGTPLRIRGGGSKDFYGR-A-LAGEVLDTRAHRG-IVSYDP--TELVITARAGTPLAELEAALAE 76 (352)
T ss_pred hHHHHHHHHHHH-HHCCCeEEEECCCCCCCCCC-C-CCCeEEEcccCCC-cEEEcC--CCCEEEECCCCCHHHHHHHHHH
Confidence 479999999999 999999999999985 4454 3 3678999999998 899999 8899999999999999999999
Q ss_pred hCCCc-ccccCCCC-cccccccccccccCCCCcccCccccceeeeEEEecCCcEEEecCC-----CCcchhhhhhccCcc
Q 009956 146 DFGLA-PRSWTDYL-RLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSES-----RQPELFFNVLGGLGQ 218 (521)
Q Consensus 146 ~~g~~-p~~~~~~~-~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~~~-----~~~dl~~~~~gs~G~ 218 (521)
+ |++ |..++... .+||||+++++++|..+.+||.++|+|+++++|+++|++++++.. .++||+|+++||+|+
T Consensus 77 ~-G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~Gt 155 (352)
T PRK11282 77 A-GQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGT 155 (352)
T ss_pred c-CCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCch
Confidence 9 875 44444333 489999999999999999999999999999999999999999753 468999999999999
Q ss_pred ceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHhc
Q 009956 219 FGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSL 259 (521)
Q Consensus 219 lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~~ 259 (521)
|||||+++||++|.|+...++.+.++ .+++.+.+..+...
T Consensus 156 LGVitevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~~~ 195 (352)
T PRK11282 156 LGVLLEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWGGQ 195 (352)
T ss_pred hhhheEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHhcC
Confidence 99999999999999998766666654 45556666555433
No 10
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-38 Score=327.92 Aligned_cols=242 Identities=13% Similarity=0.081 Sum_probs=215.2
Q ss_pred hhhHhhhcCCCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCC
Q 009956 23 VSTICKSLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMAD 102 (521)
Q Consensus 23 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~ 102 (521)
+-.+|++....++|.+|+ ..+..|.+||.. ..+.|.+||+|.|++||+++|++| +++++||++|||||++.|++.|.
T Consensus 5 li~~L~~IvG~~~Vltd~-~~l~~Y~~D~r~-~~g~P~AVV~P~SteEVa~IVklC-~e~~vPVIPRGgGTGLtGGAvP~ 81 (564)
T PRK11183 5 LINELTRIVGSSHVLTDP-AKTERYRKGFRS-GQGDALAVVFPGTLLELWRVLQAC-VAADKIIIMQAANTGLTGGSTPN 81 (564)
T ss_pred HHHHHHHhcCcccEecCH-HHHHHhccCccc-cCCCCCEEEecCCHHHHHHHHHHH-HHcCCeEEEeCCCcccccCcccC
Confidence 334788877788999999 899999999874 788999999999999999999999 99999999999999999999985
Q ss_pred C------cEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccc-c-CCCCcccccccccccccCCC
Q 009956 103 R------GLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRS-W-TDYLRLTVGGTLSNAGVSGQ 174 (521)
Q Consensus 103 ~------gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~-~-~~~~~~tvGG~~~~~g~g~~ 174 (521)
+ +|+|||++||+ |+++|. + .+++|+|||++.+|.+++.++ |++|+. + +++..+||||+|+||+.|..
T Consensus 82 ~~~~dR~gVVIsl~RMNr-IleID~--~-~~VvVePGVtl~~LeeaLk~~-Gl~p~sd~GSS~IGasIGGnIAtNAGG~~ 156 (564)
T PRK11183 82 GNDYDRDIVIISTLRLDK-IQLLNN--G-KQVLALPGTTLYQLEKALKPL-GREPHSVIGSSCIGASVIGGICNNSGGAL 156 (564)
T ss_pred CCCCcCCEEEEEhhHcCC-cEEECC--C-CeEEEeCCCcHHHHHHHHHHh-CCCCCCcccccccCCCCccceEECCcchh
Confidence 2 69999999998 999996 3 678999999999999999999 998666 3 44456799999998888999
Q ss_pred CcccCccccceeeeEEEecCCcE-------EEecCC----------CCc-------------------------------
Q 009956 175 AFRYGPQISNVAQLDVVTGNGDM-------VTCSES----------RQP------------------------------- 206 (521)
Q Consensus 175 ~~~~G~~~d~v~~~~~v~~~G~i-------~~~~~~----------~~~------------------------------- 206 (521)
..+||.+.++++. ++|+++|++ +..+.. .++
T Consensus 157 vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~par 235 (564)
T PRK11183 157 VQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPAR 235 (564)
T ss_pred heEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCccc
Confidence 9999999999999 999999999 443221 123
Q ss_pred ---chhhhh--hccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHhc-cCCCcccccccCeEE
Q 009956 207 ---ELFFNV--LGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSL-KEERESFDYVEGFVF 274 (521)
Q Consensus 207 ---dl~~~~--~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~p~~~~~~d~~~~ 274 (521)
|+.+++ .||+|+|||| +++|++.|.|+..+.+++.|++.+++.+..+.++.. +..|.+.|||++..+
T Consensus 236 fnaDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~ 308 (564)
T PRK11183 236 FNADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAF 308 (564)
T ss_pred ccCCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHH
Confidence 888999 9999999999 999999999999999999999999999999999887 888999999998765
No 11
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.1e-36 Score=317.29 Aligned_cols=202 Identities=19% Similarity=0.308 Sum_probs=182.9
Q ss_pred cccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEeccCCceEE
Q 009956 49 KDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYL 128 (521)
Q Consensus 49 ~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~~~~~~~v 128 (521)
++|++.+...|.+|++|+|++||+++|++| +++++||+++|+|||+++.+.. +|++|||++||+ ++++|+ ++.+|
T Consensus 5 ~nW~~~~~~~p~~v~~P~s~eev~~iv~~A-~~~~~~v~v~G~GhS~s~~~~~-~gvvIdl~~l~~-i~~id~--~~~~v 79 (438)
T TIGR01678 5 QNWAKTYSASPEVYYQPTSVEEVREVLALA-REQKKKVKVVGGGHSPSDIACT-DGFLIHLDKMNK-VLQFDK--EKKQI 79 (438)
T ss_pred EeCCCcccCCCCEEEecCCHHHHHHHHHHH-HHCCCeEEEECCCCCCCCCccC-CeEEEEhhhcCC-ceEEcC--CCCEE
Confidence 578888899999999999999999999999 9999999999999999887665 789999999998 889999 78999
Q ss_pred EEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCcEEEecCCCCcch
Q 009956 129 DVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESRQPEL 208 (521)
Q Consensus 129 ~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~~~~~~dl 208 (521)
+|+||+++.+|.+.+.++ |+.++..++.+.+||||+++++++|. +.+||.++|+|+++++|++||+++++++.+++|+
T Consensus 80 tV~aG~~l~~L~~~L~~~-Gl~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dl 157 (438)
T TIGR01678 80 TVEAGIRLYQLHEQLDEH-GYSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADV 157 (438)
T ss_pred EEcCCCCHHHHHHHHHHc-CCEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhH
Confidence 999999999999999999 99877788888899999999888775 7899999999999999999999999999899999
Q ss_pred hhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHhc
Q 009956 209 FFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSL 259 (521)
Q Consensus 209 ~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~~ 259 (521)
|++.+|++|+|||||+++||+.|.+..... ....+++++.+..+++...
T Consensus 158 f~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~~~ 206 (438)
T TIGR01678 158 FQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHWKS 206 (438)
T ss_pred HHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHhhc
Confidence 999999999999999999999998876543 3557788887777666544
No 12
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.5e-36 Score=314.54 Aligned_cols=199 Identities=20% Similarity=0.295 Sum_probs=177.5
Q ss_pred cccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEeccCCceEE
Q 009956 49 KDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYL 128 (521)
Q Consensus 49 ~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~~~~~~~v 128 (521)
++|++.+...|.+|++|+|++||+++|+.| ++ ||+++|+|||+++.+.. +|++|||++||+ ++++|+ ++.+|
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a-~~---~v~~~G~Ghs~~~~~~~-~g~~idl~~l~~-i~~~d~--~~~~v 73 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQA-AK---PVRAVGSGHSFTDLACT-DGTMISLTGLQG-VVDVDQ--PTGLA 73 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHh-CC---CEEEEeCCCCCCCcccC-CCEEEEhhHcCC-ceeecC--CCCEE
Confidence 468887789999999999999999999999 64 79999999999887655 789999999998 889999 78999
Q ss_pred EEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCcEEEecCCCCcch
Q 009956 129 DVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESRQPEL 208 (521)
Q Consensus 129 ~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~~~~~~dl 208 (521)
+||||+++.+|.+++.++ |+.++..++...+||||+++++++|. +.+||.+.|+|+++++|++||+++++++.+++||
T Consensus 74 ~v~aG~~l~~l~~~L~~~-G~~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dL 151 (419)
T TIGR01679 74 TVEAGTRLGALGPQLAQR-GLGLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDM 151 (419)
T ss_pred EEcCCCCHHHHHHHHHHc-CCccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHH
Confidence 999999999999999999 99877777777899999999987775 5799999999999999999999999999999999
Q ss_pred hhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHhc
Q 009956 209 FFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSL 259 (521)
Q Consensus 209 ~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~~ 259 (521)
||+++||+|+|||||++|||++|.+..... ....+++++.+..++++..
T Consensus 152 f~a~~g~~G~lGVIt~vtl~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~ 200 (419)
T TIGR01679 152 YLAARVSLGALGVISQVTLQTVALFRLRRR--DWRRPLAQTLERLDEFVDG 200 (419)
T ss_pred HHHHHhCCCceEEEEEEEEEeecceEeEEE--EEecCHHHHHHHHHHHHhc
Confidence 999999999999999999999999865443 3445777777777777654
No 13
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.6e-35 Score=310.00 Aligned_cols=205 Identities=16% Similarity=0.297 Sum_probs=185.9
Q ss_pred hcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEeccCCceE
Q 009956 48 DKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTY 127 (521)
Q Consensus 48 ~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~~~~~~~ 127 (521)
.++|++.+...|..+++|+|++||+++|+.| ++++.+|+++|+|||+.+.+.+ ++.+|||++||+ ++++|+ ++++
T Consensus 51 w~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A-~~~g~~Vr~~GsGhS~sg~a~t-~g~lldL~~ln~-Vl~vD~--~~~t 125 (541)
T TIGR01676 51 VSNWSGTHEVLTRTFHQPEAIEELEGIVKQA-NEKKARIRPVGSGLSPNGIGLS-RAGMVNLALMDK-VLEVDE--EKKR 125 (541)
T ss_pred ccccCCccccCcceEECCCCHHHHHHHHHHH-HHcCCcEEEECCCcCCCCcccC-CCeEEEhhhCCC-CEEEcC--CCCE
Confidence 4688888999999999999999999999999 9999999999999999998887 456899999998 899999 8899
Q ss_pred EEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCcEEEecCCCCcc
Q 009956 128 LDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESRQPE 207 (521)
Q Consensus 128 v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~~~~~~d 207 (521)
|+|+||+++.+|.+.+.++ |++++.+++...+||||+++++++|. +.+||.++|+|+++++|+++|+++++++.+++|
T Consensus 126 VtV~AG~~l~~L~~~L~~~-Glal~n~gsi~~~TIGGaiatgtHGt-g~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pd 203 (541)
T TIGR01676 126 VRVQAGIRVQQLVDAIKEY-GITLQNFASIREQQIGGIIQVGAHGT-GAKLPPIDEQVIAMKLVTPAKGTIEISKDKDPE 203 (541)
T ss_pred EEEcCCCCHHHHHHHHHHc-CCEeccCCCCCCceEccccccCCcCC-CCCCCCHHHhEEEEEEEECCCCEEEECCCCCHH
Confidence 9999999999999999999 99988888989999999999988776 558999999999999999999999999989999
Q ss_pred hhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHhccC
Q 009956 208 LFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLKE 261 (521)
Q Consensus 208 l~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 261 (521)
||++++||+|+|||||++|||+.|.+....... -.+++++.+..+++.....
T Consensus 204 LF~AargslG~LGVItevTLr~~Pa~~l~~~~~--~~~~~e~l~~~~~~~~~~~ 255 (541)
T TIGR01676 204 LFFLARCGLGGLGVVAEVTLQCVERQELVEHTF--ISNMKDIKKNHKKFLADNK 255 (541)
T ss_pred HHHHHhcCCCceEeEEEEEEEEEeccceeEEEE--ecCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998654332 2678888888888766543
No 14
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=1.9e-35 Score=313.90 Aligned_cols=210 Identities=18% Similarity=0.200 Sum_probs=184.9
Q ss_pred cchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEc-CCCCCCCCCCCC---CcEEEEcCCCCCeeE
Q 009956 42 ATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARG-NGHSINGQAMAD---RGLVIDMGSTGDSHF 117 (521)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G-~G~~~~g~~~~~---~gvvidl~~l~~~~i 117 (521)
..+.++.++|++.+...|.+|++|+|++||+++|++| +++++||+++| +||++.+.+.+. +|++|||++||+ ++
T Consensus 15 ~~~~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A-~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~-il 92 (557)
T TIGR01677 15 CTVSNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAA-TAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNH-VV 92 (557)
T ss_pred ceeecchhhcCCcccCCCCEEEecCCHHHHHHHHHHH-HHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCC-CE
Confidence 4667788899999999999999999999999999999 99999999995 689988765542 469999999998 89
Q ss_pred EEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCC-cccCccccceeeeEEEecCC-
Q 009956 118 EIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQA-FRYGPQISNVAQLDVVTGNG- 195 (521)
Q Consensus 118 ~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~-~~~G~~~d~v~~~~~v~~~G- 195 (521)
++|. ++.+|+|+||+++.+|.+.+.++ |+.++..++...+||||+++++++|... .+||.+.|+|+++++|+++|
T Consensus 93 ~iD~--~~~tVtV~AG~~l~~L~~~L~~~-Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~ 169 (557)
T TIGR01677 93 AVDA--TAMTVTVESGMSLRELIVEAEKA-GLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASA 169 (557)
T ss_pred EEeC--CCCEEEECCCCcHHHHHHHHHHc-CCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCc
Confidence 9999 88999999999999999999999 9987777777788999999998888665 48899999999999999998
Q ss_pred -----cEEEecCCCCcchhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHh
Q 009956 196 -----DMVTCSESRQPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVS 258 (521)
Q Consensus 196 -----~i~~~~~~~~~dl~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~ 258 (521)
+++++++.+++|||++++||+|+|||||++|||+.|.+.. .....+...+.+.+..+.+..
T Consensus 170 a~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~--~~~~~~~~~~~l~~~~~~~~~ 235 (557)
T TIGR01677 170 AEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKR--SVTYTMRDDSDFEDQFVTFGK 235 (557)
T ss_pred ccCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccc--eEEEEcCCHHHHHHHHHHhhc
Confidence 8999999889999999999999999999999999999873 234566777777776666543
No 15
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=100.00 E-value=2.4e-37 Score=297.04 Aligned_cols=279 Identities=51% Similarity=0.974 Sum_probs=222.1
Q ss_pred CCceEEEEEEeCCHHHHHHHHHHHHhccCCCcccccccCeEEecCCCCccCCCCccCCCCCCCCCCCCCCCCCceEEEEE
Q 009956 233 PDKVRWIRLVYAEFDEFTRDAELLVSLKEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCLE 312 (521)
Q Consensus 233 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 312 (521)
|+.++|+.+.|.++..+.++.+.++...... .++|++++++++.+++.++|.+++|.+.+..++..++.+.++++|++|
T Consensus 1 p~~vrw~r~~Y~df~~ft~DqE~Lis~~~~~-~~DYvEGfv~~n~~~~~~~w~s~~f~~~~~~~~~~l~~~~g~~lY~LE 79 (281)
T PF09265_consen 1 PKRVRWIRLLYSDFATFTRDQERLISKPESG-AFDYVEGFVILNRQGLINNWRSSFFSPSDPARISSLVSENGGWLYCLE 79 (281)
T ss_dssp -SEEEEEEEEES-HHHHHHHHHHHHTCBTTT-S-SEEEEEEEECCGHCCCCHCCSSSSCCCHHHHHHCHCCT-SEEEEEE
T ss_pred CCceEEEEeeeccHHHHHhhHHHHhcCCCCC-CcceeceeeeecCCCCcCCccCCCCCcccccccccccccCCCEEEEEE
Confidence 6678999999999999999999988764433 399999999999889999999998888776665556554677999999
Q ss_pred EeeeeCCCCCcchhHHHHHHHHhhcCCccceeeeccchhHHHHHhHHHHHHHhhhcccccCCccccccccCcchhHHHHH
Q 009956 313 VALHYNNSDPRSAVDAVVDRLLERLGFVSKLNFQVDVSYVDFLLRVKQVEEHARANGMWDSPHPWLNMFVSKSNLAEFNR 392 (521)
Q Consensus 313 ~~~~~~g~~~~~~v~~~~~~l~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~lw~~r~~~~d~~vp~~~l~~~~~ 392 (521)
++.+|+..+. +++++..+.+++.++...+..+..|.+|..|++|+...+...+..++|..+|||++++||.+++.+|..
T Consensus 80 ~a~~y~~~~~-~~vd~~~~~LL~~L~~~~~~~f~~DvsY~dFL~Rv~~~E~~Lr~~G~WdvPHPWlnlfvP~s~i~dF~~ 158 (281)
T PF09265_consen 80 VAKYYDPPTA-PDVDQEVEALLAGLSFIPGLAFTEDVSYVDFLDRVHSSEEKLRSKGLWDVPHPWLNLFVPKSRIEDFDR 158 (281)
T ss_dssp EEEEE-TTTH-HHHHHHHHHHHTT--S-TT-EEEEEEEHHHHHTCCHHHHHHHHHCTTSSS----EEEEEEHHHHHHHHH
T ss_pred EEEecCCccc-hhhHHHHHHHHhhcCCCcCceeeccccHHHHHHHhhhHHHHHHhcCCccccCcceeeecchHHHHHHHH
Confidence 9999987763 678899999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCC-CCcEEEEecCCCCCCCCcccccCCCceEEEEEeeCCCCCCCCcc-hHHHHHHHhHHHHHHHHHcCCcc
Q 009956 393 VVFNEILKDGI-NGPMLVYPLLRSKWDDRTSVMVPEEEIFYLVALLRFPPPHEDGA-SIKKLVDQNRGIVQYCKDRGFDF 470 (521)
Q Consensus 393 ~~~~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~ehG~g~ 470 (521)
.+.+.+++... .|++.+|||+...|+.+++.+.|++++.|.+..++...|. .+. ..+.+.+.+++|++.|...|+|.
T Consensus 159 ~V~~~il~~~~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfylv~lLrsa~P~-~~~~~l~~l~~qN~~il~~c~~agi~~ 237 (281)
T PF09265_consen 159 GVFKGILKDDGNSGPILVYPLNRSKWDTRMSAVIPDEDVFYLVALLRSADPS-DGPDDLERLLEQNRRILEFCRKAGIGG 237 (281)
T ss_dssp HCCCCCTTTS-S-SEEEEEEEEGGGS-TTSS----SSSEEEEEEEEE---TT-SSCCHHHHHHHHHHHHHHHHHHTT--E
T ss_pred HHHHHhhccCCCCceEEEEEecccccCCCCcccCCCCCeEEEEEEeCCCCCC-CCchhHHHHHHHHHHHHHHHHHcCCce
Confidence 99876766554 4899999999999999999999999999999999987665 344 89999999999999999999999
Q ss_pred eecCCCCCChHHHHHhhcchhhHHHHhhhccCCCCccCCCCccc
Q 009956 471 KLFFPHYKSEEEWKCHFGDRWTRFRDSKKAFDPKHILAPGQKIF 514 (521)
Q Consensus 471 ~~yl~~~~~~~~~~~~yG~~~~~l~~iK~~~DP~~IlnPgk~i~ 514 (521)
+.|+++|..+++|++|||++|+++.+.|++|||++||+|||.||
T Consensus 238 k~Yl~~~~t~~dW~~HFG~~W~~f~~~K~~yDP~~IL~PGq~IF 281 (281)
T PF09265_consen 238 KQYLPHYTTQEDWRRHFGPKWERFVERKRRYDPKAILAPGQGIF 281 (281)
T ss_dssp EESS---SSHHHHHHHHGHHHHHHHHHHHHH-TT--B-GGG-SS
T ss_pred EECCCCCCCHHHHHHHhchHHHHHHHHHHhCCchhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999997
No 16
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=3.2e-32 Score=287.47 Aligned_cols=206 Identities=19% Similarity=0.286 Sum_probs=181.9
Q ss_pred hhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEeccCCce
Q 009956 47 ADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGST 126 (521)
Q Consensus 47 ~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~~~~~~ 126 (521)
-.++|++.....|.++++|+|++||+++|+.| +++++||+++|+|||+.+.+.. ++.+|||++||+ ++++|+ +..
T Consensus 85 ~~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A-~~~g~~VrvvGsGhS~~~l~~t-d~glIdL~~l~~-Il~vD~--e~~ 159 (573)
T PLN02465 85 TVSNWSGTHEVQTRRYHQPESLEELEDIVKEA-HEKGRRIRPVGSGLSPNGLAFS-REGMVNLALMDK-VLEVDK--EKK 159 (573)
T ss_pred hccccccccCCCCCEEEEeCCHHHHHHHHHHH-HHcCCcEEEEcCCcCCCCeeeC-CCEEEECcCCCC-cEEEeC--CCC
Confidence 44678888999999999999999999999999 9999999999999999888776 455789999998 889999 889
Q ss_pred EEEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCcEEEecCCCCc
Q 009956 127 YLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESRQP 206 (521)
Q Consensus 127 ~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~~~~~~ 206 (521)
+|+|+||+++.+|.+.+.++ |+.++..++...+||||+++++++|. +.++|.+.|+|+++++|+++|+++++++.+++
T Consensus 160 ~VtV~AG~~l~~L~~~L~~~-GLal~n~g~I~~~TIGGaIstGtHGt-G~~~g~i~d~V~~l~lVta~G~vv~~s~~~~p 237 (573)
T PLN02465 160 RVTVQAGARVQQVVEALRPH-GLTLQNYASIREQQIGGFIQVGAHGT-GARIPPIDEQVVSMKLVTPAKGTIELSKEDDP 237 (573)
T ss_pred EEEEccCCCHHHHHHHHHHc-CCEeccCCCCCCeeecchhhCCCCCc-CCCcCcHhheEEEEEEEECCCCEEEECCCCCH
Confidence 99999999999999999999 99888888888899999999876554 56899999999999999999999999998899
Q ss_pred chhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHhccC
Q 009956 207 ELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLKE 261 (521)
Q Consensus 207 dl~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 261 (521)
|+|++.+++.|+|||||+++|++.|.+...... ...++++..+..+.+.+...
T Consensus 238 dLF~aar~glG~lGVIteVTLql~P~~~L~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (573)
T PLN02465 238 ELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHT--FVSNRKEIKKNHKKWLSENK 290 (573)
T ss_pred HHHhHhhccCCCCcEEEEEEEEEEecCceEEEE--EEecHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999754322 33467777777777765543
No 17
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=2.9e-27 Score=209.98 Aligned_cols=138 Identities=33% Similarity=0.574 Sum_probs=127.8
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHH
Q 009956 59 PLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWED 138 (521)
Q Consensus 59 p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~ 138 (521)
|.+|++|+|++||++++++| +++++|++++|+||++.+.+...++++|||++||+ ++++|+ ++.+++|+||++|.+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a-~~~~~~v~~~g~G~~~~~~~~~~~~ivi~~~~l~~-i~~id~--~~~~v~v~aG~~~~~ 76 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFA-NENGVPVRVRGGGHSWTGQSSDEGGIVIDMSRLNK-IIEIDP--ENGTVTVGAGVTWGD 76 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHH-HHTTSEEEEESSSTTSSSTTSSTTEEEEECTTCGC-EEEEET--TTTEEEEETTSBHHH
T ss_pred CcEEEEeCCHHHHHHHHHHH-HHcCCcEEEEcCCCCcccccccCCcEEEeeccccc-cccccc--cceeEEEeccccchh
Confidence 78999999999999999999 99999999999999999777756899999999998 899999 889999999999999
Q ss_pred HHHHHHHhCCCc-ccccCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCcEEEec
Q 009956 139 VLKRCVEDFGLA-PRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCS 201 (521)
Q Consensus 139 l~~~~~~~~g~~-p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~ 201 (521)
|.+++.++ |++ |..+.....+||||+++++++|..+..||.+.|+|+++++|++||++++++
T Consensus 77 l~~~l~~~-g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 77 LYEALAPR-GLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHHHH-TEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred cccccccc-cccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 99999999 775 556777778899999999999999999999999999999999999999875
No 18
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=2.4e-25 Score=221.76 Aligned_cols=182 Identities=21% Similarity=0.258 Sum_probs=153.6
Q ss_pred CCCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcC
Q 009956 31 GLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMG 110 (521)
Q Consensus 31 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~ 110 (521)
...+++..+. ++..|++. .+++.|.+++.|+|++||++++++| +++++|++++|+|||+...+.+.+|++|+|+
T Consensus 8 ~~~~~~~~~~--~l~~~~t~---~igg~a~~vv~P~s~edv~~~v~~a-~~~~~p~~v~GgGsnll~~d~g~~gvvI~l~ 81 (298)
T PRK13905 8 ALRGRLLENE--PLARYTSF---RVGGPADYLVEPADIEDLQEFLKLL-KENNIPVTVLGNGSNLLVRDGGIRGVVIRLG 81 (298)
T ss_pred cCCceeecCC--Ccccccee---ecCceEeEEEeCCCHHHHHHHHHHH-HHcCCCEEEEeCCceEEecCCCcceEEEEec
Confidence 3456666665 89999888 7899999999999999999999999 9999999999999998766655579999999
Q ss_pred C-CCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccC-ccccceeee
Q 009956 111 S-TGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYG-PQISNVAQL 188 (521)
Q Consensus 111 ~-l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G-~~~d~v~~~ 188 (521)
+ |++ ++++ +.+++|+||++|.+|.+++.++ |+....+....++||||++++|+ | .|| .++|+|.++
T Consensus 82 ~~l~~--i~~~----~~~v~v~aG~~~~~L~~~l~~~-Gl~gle~~~gipGTVGGai~~Na-G----~~G~~~~d~v~~v 149 (298)
T PRK13905 82 KGLNE--IEVE----GNRITAGAGAPLIKLARFAAEA-GLSGLEFAAGIPGTVGGAVFMNA-G----AYGGETADVLESV 149 (298)
T ss_pred CCcce--EEec----CCEEEEECCCcHHHHHHHHHHc-CCCcchhccCCCcchhHHHHHcC-C----cCceEhheeEEEE
Confidence 9 985 4543 3689999999999999999999 98654444445579999999443 1 255 799999999
Q ss_pred EEEecCCcEEEecCCCCcchhhhhhccCcc--ceEEEEeEEeeEecC
Q 009956 189 DVVTGNGDMVTCSESRQPELFFNVLGGLGQ--FGIITRARVLLQSAP 233 (521)
Q Consensus 189 ~~v~~~G~i~~~~~~~~~dl~~~~~gs~G~--lGiit~~~l~l~p~p 233 (521)
++|+++|+++++++ .|++|+++++... +||||+++|++.|..
T Consensus 150 ~vv~~~G~~~~~~~---~e~~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 150 EVLDRDGEIKTLSN---EELGFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EEEeCCCCEEEEEH---HHcCCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 99999999999865 3899999998744 799999999999973
No 19
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=2.6e-24 Score=213.47 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=157.7
Q ss_pred hhhhHhhhcCCCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCC
Q 009956 22 DVSTICKSLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMA 101 (521)
Q Consensus 22 ~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~ 101 (521)
.+-++|++ ..++++..++ ++..|++. .+++.|+++++|+|++||++++++| +++++|++++|+|||+...+.+
T Consensus 5 ~~~~~~~~-~~~~~~~~~~--~l~~~tt~---~igg~a~~~v~p~~~edl~~~v~~a-~~~~ip~~vlGgGSNllv~d~g 77 (302)
T PRK14652 5 TWRDEIAR-RVRGEVLRDA--PLAPRTAV---RVGGPADLLVRPADPDALSALLRAV-RELGVPLSILGGGANTLVADAG 77 (302)
T ss_pred HHHHHHHH-hhccccccCC--CcccccEe---ecCCcceEEEEcCCHHHHHHHHHHH-HHCCCcEEEEcCCcceeecCCC
Confidence 34447877 6777777666 99999988 7999999999999999999999999 9999999999999998755544
Q ss_pred CCcEEEEcCC-CCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccCc
Q 009956 102 DRGLVIDMGS-TGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGP 180 (521)
Q Consensus 102 ~~gvvidl~~-l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~ 180 (521)
.+|++|+|++ ++ .+..+ +.+++|+||++|.+|.+++.++ |+.+..+....++||||++++|+ | .+||.
T Consensus 78 ~~gvVI~l~~~~~--~i~~~----~~~v~v~AG~~~~~L~~~~~~~-GL~GlE~l~gIPGTvGGav~mNa-G---a~gge 146 (302)
T PRK14652 78 VRGVVLRLPQDFP--GESTD----GGRLVLGAGAPISRLPARAHAH-GLVGMEFLAGIPGTLGGAVAMNA-G---TKLGE 146 (302)
T ss_pred EeeEEEEecCCcc--eEEec----CCEEEEECCCcHHHHHHHHHHc-CCcccccccCCCcchhHHHHHcC-C---CCceE
Confidence 5689999987 44 34443 3589999999999999999999 99877766666789999999553 2 46799
Q ss_pred cccceeeeEEEecCCcEEEecCCCCcchhhhhhccC-ccceEEEEeEEeeEecC
Q 009956 181 QISNVAQLDVVTGNGDMVTCSESRQPELFFNVLGGL-GQFGIITRARVLLQSAP 233 (521)
Q Consensus 181 ~~d~v~~~~~v~~~G~i~~~~~~~~~dl~~~~~gs~-G~lGiit~~~l~l~p~p 233 (521)
++|+|.++++|+++| ..+... .|+.+.++++. +.-||||+++|+|.|..
T Consensus 147 i~d~v~~v~vv~~~G-~~~~~~---~e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 147 MKDVVTAVELATADG-AGFVPA---AALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred hhheEEEEEEECCCC-cEEeeh---hhcCcccceeccCCCeEEEEEEEEEecCC
Confidence 999999999999999 555543 48899999874 33489999999999954
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=5.4e-24 Score=211.68 Aligned_cols=187 Identities=20% Similarity=0.218 Sum_probs=156.0
Q ss_pred hHhhhcCCCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCc
Q 009956 25 TICKSLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRG 104 (521)
Q Consensus 25 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~g 104 (521)
+.|++......+..++ ++..|+++ .+++.|.++++|.|++||++++++| +++++|++++|+|||+...+.+.+|
T Consensus 8 ~~l~~~l~~~~~~~~~--~l~~~tt~---~igg~a~~vv~p~~~edv~~~l~~a-~~~~ip~~v~GgGSNll~~d~g~~G 81 (305)
T PRK12436 8 EYLSTVLPEGHVKQDE--MLKNHTHI---KVGGKADVFVAPTNYDEIQEVIKYA-NKYNIPVTFLGNGSNVIIKDGGIRG 81 (305)
T ss_pred HHHHHhcCcCceecCC--cchhccCc---ccCceEEEEEecCCHHHHHHHHHHH-HHcCCCEEEEcCCeEEEEeCCCeeE
Confidence 3566643344566665 88999887 5899999999999999999999999 9999999999999999855554569
Q ss_pred EEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccC-cccc
Q 009956 105 LVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYG-PQIS 183 (521)
Q Consensus 105 vvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G-~~~d 183 (521)
++|+|++|++ ++++. .+++|+||++|.+|.+++.++ |+.+..+....++||||++.+|+. .|| .+.|
T Consensus 82 vvI~l~~l~~--i~~~~----~~v~v~aG~~~~~L~~~~~~~-gl~Gle~~~giPGtVGGav~~NAG-----ayG~~~~d 149 (305)
T PRK12436 82 ITVSLIHITG--VTVTG----TTIVAQCGAAIIDVSRIALDH-NLTGLEFACGIPGSVGGALYMNAG-----AYGGEISF 149 (305)
T ss_pred EEEEeCCcCc--EEEeC----CEEEEEeCCcHHHHHHHHHHc-CCccchhhcCCccchhHHHHhcCc-----cchhehhe
Confidence 9999988996 57764 579999999999999999999 998766666677899999995542 266 6778
Q ss_pred ceeeeEEEecCCcEEEecCCCCcchhhhhhccC--ccceEEEEeEEeeEec
Q 009956 184 NVAQLDVVTGNGDMVTCSESRQPELFFNVLGGL--GQFGIITRARVLLQSA 232 (521)
Q Consensus 184 ~v~~~~~v~~~G~i~~~~~~~~~dl~~~~~gs~--G~lGiit~~~l~l~p~ 232 (521)
.+..+++++++|++++++++ |+.+.+|.|. ....||++++|+|.+.
T Consensus 150 vl~~v~vv~~~G~v~~~~~~---e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 150 VLTEAVVMTGDGELRTLTKE---AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred eeeEEEEEeCCCCEEEEEHH---HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 88899999999999999764 8999999983 3357999999999875
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=1.6e-23 Score=208.30 Aligned_cols=191 Identities=19% Similarity=0.203 Sum_probs=158.6
Q ss_pred chhhhHhhhcCCCCeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCC
Q 009956 21 DDVSTICKSLGLKGSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAM 100 (521)
Q Consensus 21 ~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~ 100 (521)
..+.++|++......+..++ ++..|+++ .+++.|.++++|+|++||++++++| +++++|++++|+|||+...+.
T Consensus 4 ~~~~~~l~~~~~~~~v~~~~--~L~~~tt~---~iGG~A~~~v~p~~~edv~~~v~~a-~~~~ip~~vlGgGSNll~~d~ 77 (307)
T PRK13906 4 KDIYQALQQLIPNEKIKVDE--PLKRYTYT---KTGGNADFYITPTKNEEVQAVVKYA-YQNEIPVTYLGNGSNIIIREG 77 (307)
T ss_pred HHHHHHHHHhcCCCeeecCC--ccccceEc---CcCceeEEEEEcCCHHHHHHHHHHH-HHcCCCEEEEcCceeEeecCC
Confidence 33445788753334677766 99999998 6789999999999999999999999 999999999999999886665
Q ss_pred CCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCccc-C
Q 009956 101 ADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRY-G 179 (521)
Q Consensus 101 ~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~-G 179 (521)
+.+|++|++++||+ ++++. .+++|+||+.|.+|.+++.++ ||....+....++||||++.+|+ |. | |
T Consensus 78 g~~GvvI~l~~l~~--i~~~~----~~v~v~aG~~~~~l~~~~~~~-Gl~GlE~~~gIPGtVGGav~mNa-Ga----yGg 145 (307)
T PRK13906 78 GIRGIVISLLSLDH--IEVSD----DAIIAGSGAAIIDVSRVARDY-ALTGLEFACGIPGSIGGAVYMNA-GA----YGG 145 (307)
T ss_pred CcceEEEEecCccc--eEEeC----CEEEEECCCcHHHHHHHHHHc-CCccchhhcCCCccHhHHHHhhC-Cc----chh
Confidence 55799999989996 57665 479999999999999999999 99766665556679999999554 22 4 6
Q ss_pred ccccceeeeEEEecCCcEEEecCCCCcchhhhhhccC--ccceEEEEeEEeeEec
Q 009956 180 PQISNVAQLDVVTGNGDMVTCSESRQPELFFNVLGGL--GQFGIITRARVLLQSA 232 (521)
Q Consensus 180 ~~~d~v~~~~~v~~~G~i~~~~~~~~~dl~~~~~gs~--G~lGiit~~~l~l~p~ 232 (521)
.++|+|+++++|+++|+++++++. |+.+.+|.|. ..--||++++|+|.|.
T Consensus 146 ~i~D~l~~v~vv~~~G~~~~~~~~---e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 146 EVKDCIDYALCVNEQGSLIKLTTK---ELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred hhhhheeEEEEEeCCCCEEEEEHH---HccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 899999999999999999999764 7888999874 2235999999999873
No 22
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.90 E-value=2.8e-23 Score=205.58 Aligned_cols=192 Identities=19% Similarity=0.249 Sum_probs=163.3
Q ss_pred CCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCc
Q 009956 55 YSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGA 134 (521)
Q Consensus 55 ~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~ 134 (521)
..+++.-|-+|+|++|+.++|+.| ++++.++++.|.|||..+-++. +|.+|+|.+||+ ++++|+ +..+||||+|+
T Consensus 46 ~~c~aanv~yP~teaeL~~lVa~A-~~a~~kirvVg~gHSp~~l~ct-dg~lisl~~lnk-Vv~~dp--e~~tvTV~aGi 120 (518)
T KOG4730|consen 46 STCKAANVNYPKTEAELVELVAAA-TEAGKKIRVVGSGHSPSKLVCT-DGLLISLDKLNK-VVEFDP--ELKTVTVQAGI 120 (518)
T ss_pred hhhhhcccCCCCCHHHHHHHHHHH-HHcCceEEEecccCCCCcceec-cccEEEhhhhcc-ceeeCc--hhceEEeccCc
Confidence 445566788899999999999999 9999999999999999998887 779999999998 999999 88999999999
Q ss_pred cHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCcEEEecCCCCcchhhhhhc
Q 009956 135 LWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTCSESRQPELFFNVLG 214 (521)
Q Consensus 135 ~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~~~~~~~dl~~~~~g 214 (521)
++.||.+++.+. |+..+..++....||||++++++||....-++.....+.-..+..++|.++.+++..+|++|+|.+-
T Consensus 121 rlrQLie~~~~~-GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkv 199 (518)
T KOG4730|consen 121 RLRQLIEELAKL-GLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKV 199 (518)
T ss_pred CHHHHHHHHHhc-CccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhh
Confidence 999999999999 9998888888899999999998877654435555555555555567999999999999999999999
Q ss_pred cCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHH
Q 009956 215 GLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAE 254 (521)
Q Consensus 215 s~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~ 254 (521)
|.|.||||.++||+++|..+.... ..+.+..++.+...
T Consensus 200 SLG~LGVIs~VTl~~vp~Fk~s~t--~~v~n~~dl~~d~~ 237 (518)
T KOG4730|consen 200 SLGVLGVISQVTLSVVPAFKRSLT--YVVTNDSDLFKDWK 237 (518)
T ss_pred cccceeEEEEEEEEEEecceeeeE--EEEechHHHHHHHH
Confidence 999999999999999999876443 33445555444333
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=1.7e-21 Score=196.46 Aligned_cols=179 Identities=15% Similarity=0.217 Sum_probs=152.7
Q ss_pred eEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCC
Q 009956 35 SIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGD 114 (521)
Q Consensus 35 ~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~ 114 (521)
++..+. ++..|++. .+++.|.+++.|+|++||++++++| +++++|++++|+|||+...+.+.+|++|+++ ++.
T Consensus 14 ~~~~~~--~L~~~tt~---~iGg~A~~~~~p~s~edl~~~l~~a-~~~~~p~~vlGgGSNlLv~D~g~~GvVI~l~-~~~ 86 (363)
T PRK13903 14 EVAEDV--PLAPLTTL---RVGGPARRLVTCTSTEELVAAVREL-DAAGEPLLVLGGGSNLVIADDGFDGTVVRVA-TRG 86 (363)
T ss_pred EeeCCC--CcccccEe---ecCccceEEEEeCCHHHHHHHHHHH-HHCCCCEEEEeCCeeEeECCCCccEEEEEeC-CCc
Confidence 355555 89999988 7999999999999999999999999 9999999999999998876665679999997 565
Q ss_pred eeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCccccccccc-ccccCCCCcccCccccceeeeEEEec
Q 009956 115 SHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS-NAGVSGQAFRYGPQISNVAQLDVVTG 193 (521)
Q Consensus 115 ~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~~~~v~~ 193 (521)
++++. +..+|+|+||+.|.+|.+++.++ |+......+..+.||||++. |+|+.+ ..+.|.|.++++++.
T Consensus 87 --i~i~~--~~~~v~vgAG~~~~~l~~~a~~~-GL~GlE~laGIPGTVGGAv~mNaGayG-----~ei~D~l~sV~vvd~ 156 (363)
T PRK13903 87 --VTVDC--GGGLVRAEAGAVWDDVVARTVEA-GLGGLECLSGIPGSAGATPVQNVGAYG-----QEVSDTITRVRLLDR 156 (363)
T ss_pred --EEEeC--CCCEEEEEcCCCHHHHHHHHHHc-CCccccccCCCCcchhhHhhcCCChhH-----HHHhhhEeEEEEEEC
Confidence 67775 45789999999999999999999 99876666677789999999 555433 358999999999996
Q ss_pred C-CcEEEecCCCCcchhhhhhccC---ccceEEEEeEEeeEecC
Q 009956 194 N-GDMVTCSESRQPELFFNVLGGL---GQFGIITRARVLLQSAP 233 (521)
Q Consensus 194 ~-G~i~~~~~~~~~dl~~~~~gs~---G~lGiit~~~l~l~p~p 233 (521)
+ |++++.+. .|++|++|+|. +..+|||+++|+|.|..
T Consensus 157 ~~G~~~~~~~---~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 157 RTGEVRWVPA---ADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred CCCEEEEEEH---HHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 5 99999864 49999999983 34789999999999873
No 24
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.86 E-value=2.3e-21 Score=191.25 Aligned_cols=168 Identities=18% Similarity=0.297 Sum_probs=138.5
Q ss_pred hhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEeccCCc
Q 009956 46 SADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGS 125 (521)
Q Consensus 46 ~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~~~~~ 125 (521)
.|++. .+++.|.++++|+|++||++++++| +++++|++++|+|||+...+.+.+|++|++++|++ + .+++ +
T Consensus 3 ~~tt~---~igg~a~~~v~p~s~edl~~~l~~a-~~~~~p~~vlGgGSNll~~d~~~~gvvi~l~~~~~-~-~~~~---~ 73 (284)
T TIGR00179 3 EFTTY---KIGGNARHIVCPESIEQLVNVLDNA-KEEDQPLLILGEGSNLLILDDGRGGVIINLGKGID-I-EDDE---G 73 (284)
T ss_pred Cccee---ecCceeeEEEEeCCHHHHHHHHHHH-HHcCCCEEEEecceEEEEccCCcCeEEEECCCCce-E-EEec---C
Confidence 44554 5899999999999999999999999 99999999999999999888777899999999986 4 4554 3
Q ss_pred eEEEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccCc-cccceeeeEEEecCCcEEEecCCC
Q 009956 126 TYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGP-QISNVAQLDVVTGNGDMVTCSESR 204 (521)
Q Consensus 126 ~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~-~~d~v~~~~~v~~~G~i~~~~~~~ 204 (521)
.+++|+||++|.+|.+++.++ |+....+....++||||++.+|+ | .||. +.|.|.++++|+++|++++.+..
T Consensus 74 ~~v~v~aG~~~~~l~~~~~~~-Gl~GlE~l~giPGtvGGai~mNA-G----ayG~~i~d~l~~v~vv~~~G~~~~~~~~- 146 (284)
T TIGR00179 74 EYVHVGGGENWHKLVKYALKN-GLSGLEFLAGIPGTVGGAVIMNA-G----AYGVEISEVLVYATILLATGKTEWLTNE- 146 (284)
T ss_pred CEEEEEcCCcHHHHHHHHHHC-CCcccccCCCCCchHHHHHHHhc-c----cchhehhheEEEEEEEeCCCCEEEEEHH-
Confidence 589999999999999999999 99544444444569999999443 1 2555 45678999999999999999764
Q ss_pred CcchhhhhhccC--ccc-eEEEEeEEeeEe
Q 009956 205 QPELFFNVLGGL--GQF-GIITRARVLLQS 231 (521)
Q Consensus 205 ~~dl~~~~~gs~--G~l-Giit~~~l~l~p 231 (521)
|+.+.+|.|. ... .||++++|++.+
T Consensus 147 --~~~f~YR~S~f~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 147 --QLGFGYRTSIFQHKYVGLVLKAEFQLTL 174 (284)
T ss_pred --HccccCCccccCCCCcEEEEEEEEEecc
Confidence 8888888874 322 699999999954
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=2.1e-20 Score=184.31 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=148.2
Q ss_pred CeEEcCCCcchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCC
Q 009956 34 GSIDFGVGATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTG 113 (521)
Q Consensus 34 ~~v~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~ 113 (521)
+++..++ ++..|++. .+++.+++++.|+|.+|+++++++| ++ ++|+.++|+|||+...+.+.+|++|.+++|+
T Consensus 14 ~~~~~~~--~L~~~tt~---~iGG~A~~~v~p~s~eel~~~~~~~-~~-~~p~~vlG~GSNlLv~d~g~~gvVI~l~~~~ 86 (297)
T PRK14653 14 NDVFINE--EMKCHVSF---KIGGPVPLFAIPNSTNGFIETINLL-KE-GIEVKILGNGTNVLPKDEPMDFVVVSTERLD 86 (297)
T ss_pred CeeccCC--cccccCEe---eeCcEEEEEEecCCHHHHHHHHHHH-hc-CCCEEEEcCCeeEEEecCCccEEEEEeCCcC
Confidence 3566665 99999988 7999999999999999999999999 88 9999999999999998887789999998899
Q ss_pred CeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCccccccccc-ccccCCCCcccCc-cccceeeeEEE
Q 009956 114 DSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS-NAGVSGQAFRYGP-QISNVAQLDVV 191 (521)
Q Consensus 114 ~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~-~~d~v~~~~~v 191 (521)
+ ++++. ..++|+||+.|.+|.+++.++ |+....+-...++||||++. |+|+ ||. ++|+|.+++++
T Consensus 87 ~--i~i~~----~~v~v~AG~~l~~L~~~~~~~-GL~GlE~l~gIPGTVGGAv~mNAGa------yG~ei~d~l~~V~~~ 153 (297)
T PRK14653 87 D--IFVDN----DKIICESGLSLKKLCLVAAKN-GLSGFENAYGIPGSVGGAVYMNAGA------YGWETAENIVEVVAY 153 (297)
T ss_pred c--eEEeC----CEEEEeCCCcHHHHHHHHHHC-CCcchhhhcCCchhHHHHHHHhCcc------CchhhheeEEEEEEE
Confidence 6 57765 479999999999999999999 99655544445679999999 5543 566 99999999999
Q ss_pred ecCCcEEEecCCCCcchhhhhhccC----ccceEEEEeEEeeEecC
Q 009956 192 TGNGDMVTCSESRQPELFFNVLGGL----GQFGIITRARVLLQSAP 233 (521)
Q Consensus 192 ~~~G~i~~~~~~~~~dl~~~~~gs~----G~lGiit~~~l~l~p~p 233 (521)
+ +|++++.++. |+-+.++.|. +.+ |||+++|+|.|..
T Consensus 154 d-~g~v~~~~~~---e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 154 D-GKKIIRLGKN---EIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred C-CCEEEEEchh---hccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 9 7888888654 7777777763 233 9999999998853
No 26
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=1.7e-20 Score=185.86 Aligned_cols=175 Identities=18% Similarity=0.185 Sum_probs=149.5
Q ss_pred cchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCC-CeeEEEe
Q 009956 42 ATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTG-DSHFEIV 120 (521)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~-~~~i~id 120 (521)
.++..|++. .+++.++.++.|+|++|+++++++| +++++|+.++|+|||+...+.+.+|++|++++++ + +..+
T Consensus 7 ~~L~~~tt~---~iGg~a~~~v~p~~~~dl~~~l~~~-~~~~ip~~vlG~GSNlL~~d~g~~GvVI~l~~~~~~--i~~~ 80 (295)
T PRK14649 7 EPLAPYTSW---RIGGPARYFVEPTTPDEAIAAAAWA-EQRQLPLFWLGGGSNLLVRDEGFDGLVARYRGQRWE--LHEH 80 (295)
T ss_pred CccccccEe---eeCceeeEEEEcCCHHHHHHHHHHH-HHCCCCEEEEecceeEEEeCCCcCeEEEEecCCCcE--EEEe
Confidence 488888887 7999999999999999999999999 9999999999999999988888889999998854 3 4455
Q ss_pred ccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCccccccccc-ccccCCCCcccCccccceeeeEEEecCCcEEE
Q 009956 121 KVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS-NAGVSGQAFRYGPQISNVAQLDVVTGNGDMVT 199 (521)
Q Consensus 121 ~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~ 199 (521)
. +..+++|+||+.|.+|.+++.++ ||....+-...++||||++. |+|+.+ +.+.|+|.++++++.+|++++
T Consensus 81 ~--~~~~v~v~AG~~~~~l~~~~~~~-GL~GlE~l~GIPGTvGGa~~mNaGayg-----~ei~d~l~~V~~~~~~g~~~~ 152 (295)
T PRK14649 81 G--DTAEVWVEAGAPMAGTARRLAAQ-GWAGLEWAEGLPGTIGGAIYGNAGCYG-----GDTATVLIRAWLLLNGSECVE 152 (295)
T ss_pred C--CcEEEEEEcCCcHHHHHHHHHHc-CCccccccCCCCcchhHHHHhhccccc-----eEhheeEEEEEEEeCCCCEEE
Confidence 5 44589999999999999999999 99766666666779999777 666444 679999999999999999999
Q ss_pred ecCCCCcchhhhhhccC--cc--------ceEEEEeEEeeEecC
Q 009956 200 CSESRQPELFFNVLGGL--GQ--------FGIITRARVLLQSAP 233 (521)
Q Consensus 200 ~~~~~~~dl~~~~~gs~--G~--------lGiit~~~l~l~p~p 233 (521)
.++. |+.+.+|.|. .. --||++++|++.|..
T Consensus 153 ~~~~---el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 153 WSVH---DFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred EeHH---HcCcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 9654 8999999873 21 239999999998753
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.81 E-value=7.9e-19 Score=169.51 Aligned_cols=190 Identities=18% Similarity=0.258 Sum_probs=161.9
Q ss_pred cchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEec
Q 009956 42 ATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVK 121 (521)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~ 121 (521)
.++..|++. .+++.+..++.|++.+|+.++++++ .+.++|+.+.|+|||+...+.+.++++|.+.+++. ++++.
T Consensus 7 ~~L~~~ttf---riGg~A~~~~~~~~~e~l~~~~~~~-~~~~~p~~ilG~GSNlLv~d~g~~gvvi~~~~~~~--~~~~~ 80 (291)
T COG0812 7 VPLKRYTTF---RIGGPAEVLVEPRDIEELKAALKYA-KAEDLPVLILGGGSNLLVRDGGIGGVVIKLGKLNF--IEIEG 80 (291)
T ss_pred CccccceeE---ecCcceeEEEecCCHHHHHHHHHhh-hhcCCCEEEEecCceEEEecCCCceEEEEcccccc--eeeec
Confidence 378888888 7999999999999999999999999 99999999999999988887778899999999885 67766
Q ss_pred cCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCccccccccc-ccccCCCCcccCccccceeeeEEEecCCcEEEe
Q 009956 122 VKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS-NAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTC 200 (521)
Q Consensus 122 ~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~ 200 (521)
....|+|++|+.|.+|.+++.++ |+....+-...++||||++. |+|+.+ +.++|.+.++++++.+|++.+.
T Consensus 81 --~~~~i~a~aG~~~~~l~~~~~~~-gl~GlE~l~gIPGsvGgav~mNaGAyG-----~Ei~d~~~~v~~ld~~G~~~~l 152 (291)
T COG0812 81 --DDGLIEAGAGAPWHDLVRFALEN-GLSGLEFLAGIPGSVGGAVIMNAGAYG-----VEISDVLVSVEVLDRDGEVRWL 152 (291)
T ss_pred --cCCeEEEccCCcHHHHHHHHHHc-CCcchhhhcCCCcccchhhhccCcccc-----cchheeEEEEEEEcCCCCEEEE
Confidence 44599999999999999999999 99766666666789999999 776555 6699999999999999999999
Q ss_pred cCCCCcchhhhhhccC--ccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHHHhcc
Q 009956 201 SESRQPELFFNVLGGL--GQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELLVSLK 260 (521)
Q Consensus 201 ~~~~~~dl~~~~~gs~--G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i~~~~ 260 (521)
++. ++-+.||.|. ....||++|+|+|.|- . .++..+.+.++.+.+
T Consensus 153 ~~~---el~f~YR~S~f~~~~~vvl~v~f~L~~~-~-----------~~~I~~~~~~ir~~R 199 (291)
T COG0812 153 SAE---ELGFGYRTSPFKKEYLVVLSVEFKLTKG-D-----------PEDILAAMCAIRRRR 199 (291)
T ss_pred EHH---HhCcccccCcCCCCCEEEEEEEEEeCCC-C-----------HHHHHHHHHHHHHhh
Confidence 764 8899999885 3338999999999886 2 345556666676655
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=3.9e-19 Score=174.58 Aligned_cols=174 Identities=17% Similarity=0.151 Sum_probs=150.2
Q ss_pred cchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCC-CCcEEEEcCCCCCeeEEEe
Q 009956 42 ATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMA-DRGLVIDMGSTGDSHFEIV 120 (521)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~-~~gvvidl~~l~~~~i~id 120 (521)
.++..|++. .+++.++.++.|+|.+|++++++++ +++++|+.+.|+|||+...+.+ .+|++|.+.+|+. ++++
T Consensus 19 ~~L~~~tt~---~iGG~A~~~~~p~~~~eL~~~l~~~-~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~--i~~~ 92 (302)
T PRK14650 19 KNLANYTTY---KIGGISKLFLTPKTIKDAEHIFKAA-IEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLNK--IEIH 92 (302)
T ss_pred cccccccee---eeCcEEEEEEecCCHHHHHHHHHHH-HHcCCCEEEEeceeEEEEECCCccceEEEEECCcCc--EEEe
Confidence 688888888 7999999999999999999999999 9999999999999999888876 6899999877885 6776
Q ss_pred ccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCccccccccc-ccccCCCCcccCccccceeeeEEEecCCcEEE
Q 009956 121 KVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS-NAGVSGQAFRYGPQISNVAQLDVVTGNGDMVT 199 (521)
Q Consensus 121 ~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~ 199 (521)
. ..++|+||+.|.+|.+++.++ |+....+-...++||||++. |+|+.+ +.+.|.|.++++++.+|++.+
T Consensus 93 ~----~~v~a~AG~~~~~l~~~~~~~-gl~GlE~l~gIPGTVGGAv~mNAGayG-----~ei~d~l~sV~~~d~~g~~~~ 162 (302)
T PRK14650 93 D----NQIVAECGTNFEDLCKFALQN-ELSGLEFIYGLPGTLGGAIWMNARCFG-----NEISEILDKITFIDEKGKTIC 162 (302)
T ss_pred C----CEEEEEeCCcHHHHHHHHHHc-CCchhhhhcCCCcchhHHHHhhCCccc-----cchheeEEEEEEEECCCCEEE
Confidence 5 369999999999999999999 99766666667789999999 776555 569999999999999999998
Q ss_pred ecCCCCcchhhhhhccC--ccceEEEEeEEeeEecCC
Q 009956 200 CSESRQPELFFNVLGGL--GQFGIITRARVLLQSAPD 234 (521)
Q Consensus 200 ~~~~~~~dl~~~~~gs~--G~lGiit~~~l~l~p~p~ 234 (521)
.+.. |+-+.+|.|. ..-.||++++|+|.|..+
T Consensus 163 ~~~~---e~~f~YR~S~f~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 163 KKFK---KEEFKYKISPFQNKNTFILKATLNLKKGNK 196 (302)
T ss_pred EEHH---HcCcccccccCCCCCEEEEEEEEEEcCCCH
Confidence 8654 7888888874 223699999999988643
No 29
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.79 E-value=8.6e-21 Score=184.69 Aligned_cols=217 Identities=14% Similarity=0.191 Sum_probs=140.7
Q ss_pred cCCceEEEEEEeCCHHHHHHHHHHHHhccCCCcccccccCeEEecCCCCccCCCCccCCCCCCCCCCCCCCCCCceEEEE
Q 009956 232 APDKVRWIRLVYAEFDEFTRDAELLVSLKEERESFDYVEGFVFVNSDDTVNGWPSVPLDPAQVFDPAHLPQTAGSVLYCL 311 (521)
Q Consensus 232 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (521)
+|+....+.+.|++++++.+++..+.+.+..|+++|++|...+........ . .. .....+++++
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~g~~p~a~el~d~~~~~~~~~~~~------~---------~~-~~~~~~~llv 64 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQSGIIPSAIELLDSAALKLALEHWG------E---------PL-PPEGGAVLLV 64 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHHCSSCCECCCCHHHHHHHHHHSEE------E---------TS-STTTSEEEEE
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHcCCCceEEeeeCHHHHHHHHhhcC------C---------Cc-cCCcccEEEE
Confidence 477888899999999999999999888888999999999866422111100 0 11 1123466778
Q ss_pred EEeeeeCCCCCcchhHHHHH-HHHhhcCCcccee--eeccchhHHHHHhHHHHHHHhhhcccccCCc-------------
Q 009956 312 EVALHYNNSDPRSAVDAVVD-RLLERLGFVSKLN--FQVDVSYVDFLLRVKQVEEHARANGMWDSPH------------- 375 (521)
Q Consensus 312 e~~~~~~g~~~~~~v~~~~~-~l~~~~~~~~g~~--~~~d~~~~~~~~~~~~~~~~~~~~~lw~~r~------------- 375 (521)
+ ++|.++ +.++++++ .+.+.++...+.. ...+ ......+|..|+
T Consensus 65 ~----~~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~a~~---------------~~~~~~~W~~R~~~~~~~~~~~~~~ 124 (248)
T PF02913_consen 65 E----FEGSDE-EAVEEQLEAEIEEICKKYGGEDVVIADD---------------EEEQERLWAIRRAIMPYLRDAAGRA 124 (248)
T ss_dssp E----CCCHHH-CCHHHHHHHHHHHHHCTCTCCEEEEEHC---------------HHCTSTHHHHHHHHCCGGGCSHCTT
T ss_pred E----ECCCcH-HHHHHHHHHHHHHHHhhcCCceeEEeCC---------------HHHHHhhhhhhhhhccccccccccc
Confidence 8 677653 34555555 5555554332221 1111 111122332222
Q ss_pred --c--ccccccCcchhHHHHHHHHHHhhhcCCCCcEEEEecCCCCCCCCcccccCCCceEEEEEeeCCCCCCCCcc-hHH
Q 009956 376 --P--WLNMFVSKSNLAEFNRVVFNEILKDGINGPMLVYPLLRSKWDDRTSVMVPEEEIFYLVALLRFPPPHEDGA-SIK 450 (521)
Q Consensus 376 --~--~~d~~vp~~~l~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~ 450 (521)
. ..|++||+++++++++.+.+ +++... .... ..+|+++|++|+++.+.. .++ ..+
T Consensus 125 ~~~~~~~dv~vp~~~l~~~~~~~~~-~~~~~~-~~~~------------~~gH~~~g~~h~~~~~~~------~~~~~~~ 184 (248)
T PF02913_consen 125 GPVWDTEDVAVPPSRLPEFLREIRA-LLREYG-LEVC------------HFGHAGDGNLHLYILFDP------RDPEEPE 184 (248)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHHH-HHHHCT-EEEE------------EEEEEEECEEEEEEEEET------TSHHHHH
T ss_pred CCceeeeeecccchhhhhHHHhhhh-hhhhcc-cccc------------ceEEccCCeEEEEeeccc------chHHHHH
Confidence 1 24899999999999999985 444322 1111 448999999999999763 223 566
Q ss_pred HHHHHhHHHHH--------HHHHcCCcc--eecCCCCCChHHHHHhhcchhhHHHHhhhccCCCCccCCCCc
Q 009956 451 KLVDQNRGIVQ--------YCKDRGFDF--KLFFPHYKSEEEWKCHFGDRWTRFRDSKKAFDPKHILAPGQK 512 (521)
Q Consensus 451 ~~~~~~~~i~~--------~~~ehG~g~--~~yl~~~~~~~~~~~~yG~~~~~l~~iK~~~DP~~IlnPgk~ 512 (521)
.+.++.+++++ +++|||+|+ ++|+....++.. +++|++||++|||+|||||||+
T Consensus 185 ~~~~~~~~~~~~~~~~gG~is~eHG~G~~k~~~~~~~~~~~~--------~~~~~~iK~~~DP~~ilNPGki 248 (248)
T PF02913_consen 185 RAEALWDELYELVLELGGSISAEHGIGKLKKPYLEEEYGPAA--------LRLMRAIKQAFDPNGILNPGKI 248 (248)
T ss_dssp HHHHHHHHHHHHHHHTT-BBSSSSGGGHHHHHHHCHHCHHHH--------HHHHHHHHHHH-TTS-BSTTG-
T ss_pred HHHHHHHHHHHHHHhcccccccccchhhhhHHHHHHhcchHH--------HHHHHHhhhccCCccCCCCCCC
Confidence 66666666665 677999998 578766555555 7999999999999999999963
No 30
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=1.5e-18 Score=173.06 Aligned_cols=174 Identities=17% Similarity=0.184 Sum_probs=147.4
Q ss_pred cchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEe-
Q 009956 42 ATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIV- 120 (521)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id- 120 (521)
.++..|++. .+++.++.++.|+|++|+++++++| +++++|+++.|+|||+...+ +.+|++|.+ +|+. ++++
T Consensus 7 ~~L~~~tt~---riGG~A~~~~~p~~~~el~~~~~~~-~~~~~p~~vlG~GSNlLv~D-~~~g~vI~~-~~~~--~~~~~ 78 (334)
T PRK00046 7 HSLKPLNTF---GIDARARHLVEAESEEQLLEALADA-RAAGLPVLVLGGGSNVLFTE-DFDGTVLLN-RIKG--IEVLS 78 (334)
T ss_pred Cccccccee---ccCcEEeEEEeeCCHHHHHHHHHHH-HHcCCCEEEEeceEEEEECC-CCCEEEEEe-cCCc--eEEEe
Confidence 478888888 7999999999999999999999999 99999999999999988777 578999998 4885 5663
Q ss_pred ccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCccccccccc-ccccCCCCcccCccccceeeeEEEecC-CcEE
Q 009956 121 KVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS-NAGVSGQAFRYGPQISNVAQLDVVTGN-GDMV 198 (521)
Q Consensus 121 ~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~~~~v~~~-G~i~ 198 (521)
...+...++|+||+.|.+|.+++.++ ||....+-+..++||||++. |+|+.+ +.+.|.|.++++++.+ |++.
T Consensus 79 ~~~~~~~v~a~AG~~~~~l~~~~~~~-gl~GlE~l~gIPGTVGGAv~mNaGayG-----~ei~d~l~~V~v~d~~~g~~~ 152 (334)
T PRK00046 79 EDDDAWYLHVGAGENWHDLVLWTLQQ-GMPGLENLALIPGTVGAAPIQNIGAYG-----VELKDVCDYVEALDLATGEFV 152 (334)
T ss_pred cCCCeEEEEEEcCCcHHHHHHHHHHc-CchhhHHhcCCCcchhHHHHhcCCcCc-----ccHheeEEEEEEEECCCCcEE
Confidence 21022379999999999999999999 99766666666789999999 766555 5699999999999987 9999
Q ss_pred EecCCCCcchhhhhhccC--cc---ceEEEEeEEeeEec
Q 009956 199 TCSESRQPELFFNVLGGL--GQ---FGIITRARVLLQSA 232 (521)
Q Consensus 199 ~~~~~~~~dl~~~~~gs~--G~---lGiit~~~l~l~p~ 232 (521)
+.++. |+.+.+|.|. .. --||++++|+|.|.
T Consensus 153 ~~~~~---e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 153 RLSAA---ECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EEEHH---HcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 98764 8889999884 22 35999999999985
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.75 E-value=1.2e-17 Score=166.23 Aligned_cols=177 Identities=14% Similarity=0.099 Sum_probs=145.5
Q ss_pred cchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEec
Q 009956 42 ATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVK 121 (521)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~ 121 (521)
.++..|++. .+++.+..++.|+|.+|++++++++ +++++|+.+.|+|||+...+.+.+|+||.+.+|+. +++..
T Consensus 16 ~~La~~tT~---rIGG~A~~~~~p~s~~el~~~l~~~-~~~~~p~~iLG~GSNlL~~D~g~~G~VI~l~~~~~--i~i~~ 89 (354)
T PRK14648 16 VPLAERCSF---RIGGAAQFWAEPRSCTQLRALIEEA-QRARIPLSLIGGGSNVLIADEGVPGLMLSLRRFRS--LHTQT 89 (354)
T ss_pred CCcccccee---eeCcEEEEEEeeCCHHHHHHHHHHH-HHcCCCEEEEeceeEEEEeCCCccEEEEEeCCcCc--eEEee
Confidence 589999888 7999999999999999999999999 99999999999999999888877899999977886 55421
Q ss_pred c-CCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCccccccccc-ccccCCCCcccCccccceeeeEEE--------
Q 009956 122 V-KGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS-NAGVSGQAFRYGPQISNVAQLDVV-------- 191 (521)
Q Consensus 122 ~-~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~~~~v-------- 191 (521)
. .+...++|+||+.|.+|.+++.++ |+....+-+..++||||++. |+|+.+ +.+.|.|.+++++
T Consensus 90 ~~~~~~~v~agAG~~~~~Lv~~~~~~-gl~GlE~laGIPGTVGGAv~mNAGAyG-----~ei~d~l~~V~v~d~~~~~~~ 163 (354)
T PRK14648 90 QRDGSVLVHAGAGLPVAALLAFCAHH-ALRGLETFAGLPGSVGGAAYMNARCYG-----RAIADCFHSARTLVLHPVRSR 163 (354)
T ss_pred ccCCcEEEEEEeCCcHHHHHHHHHHc-CCcchhhhcCCCcchhhHhhhcCCccc-----eEhhheEEEEEEEeccCcccc
Confidence 0 033479999999999999999999 99766666667789999999 766555 5699999999999
Q ss_pred ------------ecCCcE-------------EEecCCCCcchhhhhhccC--cc--------ceEEEEeEEeeEecC
Q 009956 192 ------------TGNGDM-------------VTCSESRQPELFFNVLGGL--GQ--------FGIITRARVLLQSAP 233 (521)
Q Consensus 192 ------------~~~G~i-------------~~~~~~~~~dl~~~~~gs~--G~--------lGiit~~~l~l~p~p 233 (521)
+.+|++ .+... .|+.+.++.|. .. --||++++|+|.|..
T Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 164 AKELPEVRKNAQDKRGECLGLDGGPFTCSSFQTVFA---RAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred cccccccccccccCCCceecccccccccccceEecH---HHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 456776 34432 37788888874 21 249999999998853
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.70 E-value=3.2e-17 Score=159.43 Aligned_cols=142 Identities=18% Similarity=0.321 Sum_probs=125.0
Q ss_pred EEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCcccccccccccccCCCCcccCccccce
Q 009956 106 VIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNV 185 (521)
Q Consensus 106 vidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v 185 (521)
-|++..|.. |+++|. ++.+|+|||+||++|+.+++.+. |++.++.+.....||||.+.+-|.-+.|++||...+.+
T Consensus 105 ~v~id~l~d-ILeld~--ekmtvrvEP~Vtmgqis~~lip~-g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~ 180 (543)
T KOG1262|consen 105 QVPIDELHD-ILELDE--EKMTVRVEPLVTMGQISKFLIPK-GYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHIC 180 (543)
T ss_pred cCCHHHHhH-HHhcch--hcceEEecCCccHHHHHHHhccC-CceeeeecccccceecceeeecccccccchhhhHHhhh
Confidence 344444444 899999 88999999999999999999999 99998999999999999999888899999999999999
Q ss_pred eeeEEEecCCcEEEecCC-CCcchhhhhhccCccceEEEEeEEeeEecCCceEEEEEEeCCHHHHHH
Q 009956 186 AQLDVVTGNGDMVTCSES-RQPELFFNVLGGLGQFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTR 251 (521)
Q Consensus 186 ~~~~~v~~~G~i~~~~~~-~~~dl~~~~~gs~G~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~ 251 (521)
.+.|+|++||+++++.++ +++|||.++..|.||+|..+.+++|+.|..+.+..-.+...++++..+
T Consensus 181 ~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~ 247 (543)
T KOG1262|consen 181 TAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCK 247 (543)
T ss_pred heeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHH
Confidence 999999999999999875 889999999999999999999999999998876655555566555433
No 33
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.63 E-value=4.1e-15 Score=144.24 Aligned_cols=161 Identities=18% Similarity=0.185 Sum_probs=133.8
Q ss_pred cchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCC-CCCeeEEEe
Q 009956 42 ATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGS-TGDSHFEIV 120 (521)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~-l~~~~i~id 120 (521)
.++..|++. .++++++.++ |.|.+|+++++ ++|+.+.|+|||+...+.+.+|++|.+.+ ++. +++
T Consensus 7 ~~L~~~tt~---riGG~A~~~~-p~~~~~l~~~~-------~~p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~~--~~~- 72 (273)
T PRK14651 7 VPLARYTTL---GVGGPAELWT-VETHEQLAEAT-------EAPYRVLGGGSNLLVSDAGVPERVIRLGGEFAE--WDL- 72 (273)
T ss_pred CccccccEe---ecCceEEEEe-cCCHHHHHHHH-------CCCeEEEeceeEEEEcCCCcceEEEEECCccee--EeE-
Confidence 478888887 7999999999 99999999775 37999999999999888777899999866 553 333
Q ss_pred ccCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCccccccccc-ccccCCCCcccCccccceeeeEEEecCCcEEE
Q 009956 121 KVKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS-NAGVSGQAFRYGPQISNVAQLDVVTGNGDMVT 199 (521)
Q Consensus 121 ~~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~ 199 (521)
+. +|+||+.|.+|.+++.++ |+....+-...+.||||++. |+|+.+ +.+.|.|.++++++ +|++.+
T Consensus 73 ---~~---~a~AG~~~~~l~~~~~~~-gl~GlE~l~gIPGTVGGAv~mNaGayG-----~ei~d~l~~V~~~~-~g~~~~ 139 (273)
T PRK14651 73 ---DG---WVGGGVPLPGLVRRAARL-GLSGLEGLVGIPAQVGGAVKMNAGTRF-----GEMADALHTVEIVH-DGGFHQ 139 (273)
T ss_pred ---CC---EEECCCcHHHHHHHHHHC-CCcchhhhcCCCcchhhHHHhhCCccc-----cChheeEEEEEEEE-CCCEEE
Confidence 22 699999999999999999 99766666666789999999 666554 56999999999997 899999
Q ss_pred ecCCCCcchhhhhhccC-ccceEEEEeEEeeEec
Q 009956 200 CSESRQPELFFNVLGGL-GQFGIITRARVLLQSA 232 (521)
Q Consensus 200 ~~~~~~~dl~~~~~gs~-G~lGiit~~~l~l~p~ 232 (521)
.++. |+.+.+|.|. -.-.||++++|+|.|.
T Consensus 140 ~~~~---e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 140 YSPD---ELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred EEHH---HccccccccCCCCCEEEEEEEEEECCC
Confidence 8764 8888888874 2225999999999885
No 34
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.44 E-value=3.7e-13 Score=129.38 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=125.3
Q ss_pred cchhhhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEec
Q 009956 42 ATNGSADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVK 121 (521)
Q Consensus 42 ~~~~~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~ 121 (521)
.+++.|++. .++++++.++.|++.+ + ++|+.+.|+|||+...+.+.++++ -+++|+. ++++.
T Consensus 5 ~~L~~~tt~---~iGG~A~~~~~~~~~~-l-----------~~p~~vlG~GSNlLv~D~g~~~vv-~~~~~~~--~~~~~ 66 (257)
T PRK13904 5 IDFSKYSSV---KIGPPLEVLVLEEIDD-F-----------SQDGQIIGGANNLLISPNPKNLAI-LGKNFDY--IKIDG 66 (257)
T ss_pred cchhhcCce---eECceEEEEEEechhh-h-----------CCCeEEEeceeEEEEecCCccEEE-EccCcCe--EEEeC
Confidence 588888888 7999999999999887 6 589999999999887776645555 3456875 67765
Q ss_pred cCCceEEEEeCCccHHHHHHHHHHhCCCcccccCCCCccccccccc-ccccCCCCcccCccccceeeeEEEecCCcEEEe
Q 009956 122 VKGSTYLDVSGGALWEDVLKRCVEDFGLAPRSWTDYLRLTVGGTLS-NAGVSGQAFRYGPQISNVAQLDVVTGNGDMVTC 200 (521)
Q Consensus 122 ~~~~~~v~v~aG~~~~~l~~~~~~~~g~~p~~~~~~~~~tvGG~~~-~~g~g~~~~~~G~~~d~v~~~~~v~~~G~i~~~ 200 (521)
..++|+||+.|.+|.+++.++ |+....+-...+.||||++. |+|+.+ +.+.|.|.++++++ | +.
T Consensus 67 ----~~v~~~AG~~l~~l~~~~~~~-gl~GlE~l~gIPGtVGGAv~mNaGa~g-----~ei~d~l~~V~~~~--~---~~ 131 (257)
T PRK13904 67 ----ECLEIGGATKSGKIFNYAKKN-NLGGFEFLGKLPGTLGGLVKMNAGLKE-----YEISNNLESICTNG--G---WI 131 (257)
T ss_pred ----CEEEEEcCCcHHHHHHHHHHC-CCchhhhhcCCCccHHHHHHhcCCcCc-----cchheeEEEEEEEe--e---EE
Confidence 479999999999999999999 99766666666789999999 666555 56889999999998 4 33
Q ss_pred cCCCCcchhhhhhccCccceEEEEeEEeeEecCC
Q 009956 201 SESRQPELFFNVLGGLGQFGIITRARVLLQSAPD 234 (521)
Q Consensus 201 ~~~~~~dl~~~~~gs~G~lGiit~~~l~l~p~p~ 234 (521)
++ .|+.+.+|.|.=. .||++++|+|.|..+
T Consensus 132 ~~---~e~~f~YR~S~~~-~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 132 EK---EDIGFGYRSSGIN-GVILEARFKKTHGFD 161 (257)
T ss_pred eH---HHCcccccCcCCC-cEEEEEEEEECCCCH
Confidence 32 3788888887422 499999999998643
No 35
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=98.09 E-value=2.1e-06 Score=60.44 Aligned_cols=32 Identities=28% Similarity=0.781 Sum_probs=25.8
Q ss_pred HH-HHhhcchhhHHHHhhhccCCCCccCCCCcc
Q 009956 482 EW-KCHFGDRWTRFRDSKKAFDPKHILAPGQKI 513 (521)
Q Consensus 482 ~~-~~~yG~~~~~l~~iK~~~DP~~IlnPgk~i 513 (521)
+| +.+||++|++|++||++|||+|+|.-.+.|
T Consensus 14 ~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I 46 (47)
T PF08031_consen 14 DWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSI 46 (47)
T ss_dssp HHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS-
T ss_pred HHHHHHhchhHHHHHHHHHHhCccceeCCCCCc
Confidence 56 889999999999999999999999988766
No 36
>PRK09799 putative oxidoreductase; Provisional
Probab=96.83 E-value=0.0028 Score=62.03 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=84.5
Q ss_pred EEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCC-CCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHH
Q 009956 61 AVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQA-MADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDV 139 (521)
Q Consensus 61 ~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~-~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l 139 (521)
.+++|+|.+|+.++++. ++-...+.+|||.+.... .....++||++++ . .-.|.. ++..++++|++|+.++
T Consensus 4 ~y~~P~sl~Ea~~ll~~----~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-e-L~~I~~--~~~~l~IGA~vT~~~l 75 (258)
T PRK09799 4 QFFRPDSVEQALELKRR----YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-E-LDWIEW--DNGALRIGAMSRLQPL 75 (258)
T ss_pred cEeCCCCHHHHHHHHHh----CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-C-CCeEEe--cCCEEEEccCCcHHHH
Confidence 57899999999988663 222246799999974321 1235789999974 3 223333 4478999999999998
Q ss_pred HHHHH-HhCCC-----cccccCCCCcccccccccccccCCCCcccCccccc-----eeeeEEEecCCcEEEecCCCCcch
Q 009956 140 LKRCV-EDFGL-----APRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISN-----VAQLDVVTGNGDMVTCSESRQPEL 208 (521)
Q Consensus 140 ~~~~~-~~~g~-----~p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~-----v~~~~~v~~~G~i~~~~~~~~~dl 208 (521)
.+... +. .+ ...++.--+.+|+||++.++.- ..|. .++.+++..+|+.+. +
T Consensus 76 ~~~~~~~~-~L~~a~~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vp--------l 137 (258)
T PRK09799 76 RDARFIPA-ALREALGFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLS--------I 137 (258)
T ss_pred HhCcccHH-HHHHHHHHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEe--------H
Confidence 76431 10 11 1122333456899999997631 1333 234455555553322 2
Q ss_pred hhhhhccCccceEEEEeEEe
Q 009956 209 FFNVLGGLGQFGIITRARVL 228 (521)
Q Consensus 209 ~~~~~gs~G~lGiit~~~l~ 228 (521)
-..+.|..+ .|||++.+-
T Consensus 138 ~~f~~g~~~--Eil~~I~iP 155 (258)
T PRK09799 138 EDYLACPCD--RLLTEIIIP 155 (258)
T ss_pred HHhcCCCCC--cEEEEEEcC
Confidence 233444433 499988775
No 37
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=96.83 E-value=0.0014 Score=60.04 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=62.8
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCC---CCCCcEEEEcCCCCC-eeEEEeccCCceEEEEeCCc
Q 009956 59 PLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQA---MADRGLVIDMGSTGD-SHFEIVKVKGSTYLDVSGGA 134 (521)
Q Consensus 59 p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~---~~~~gvvidl~~l~~-~~i~id~~~~~~~v~v~aG~ 134 (521)
+..+++|.|.+|+.++++ . .. ...+.+|||.+...- ......+||++++.. ..|+.++ ..++++|++
T Consensus 2 ~~~~~~P~sl~ea~~ll~-~-~~---~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~----~~l~IGA~v 72 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA-K-GP---DARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDD----GGLRIGAAV 72 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH-H-GT---TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEET----SEEEEETTS
T ss_pred CeEEEccCCHHHHHHHHh-c-CC---CCEEEeCCCccchhcccCccccceEEEeEEecccccEEEec----cEEEECCCc
Confidence 456899999999999988 3 22 358899999964211 112579999988532 0255544 789999999
Q ss_pred cHHHHHHHHH---------HhCCCcccccCCCCcccccccccccc
Q 009956 135 LWEDVLKRCV---------EDFGLAPRSWTDYLRLTVGGTLSNAG 170 (521)
Q Consensus 135 ~~~~l~~~~~---------~~~g~~p~~~~~~~~~tvGG~~~~~g 170 (521)
++.++.+.-. +.-..+ .++.--+.+|+||+++++.
T Consensus 73 tl~~l~~~~~~~~~~p~L~~~~~~i-as~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 73 TLSELEESPLIQQYFPALAQAARRI-ASPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHCTS-S-HHHHTT-BHHHHHHHTB
T ss_pred cHHHHhhcchhhhhHHHHHHHHHHh-CCHhHeeeeeeccccccCc
Confidence 9999987621 110111 1222234679999998764
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.67 E-value=0.0083 Score=63.75 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=69.1
Q ss_pred CccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCC---CCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCc
Q 009956 58 KPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQA---MADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGA 134 (521)
Q Consensus 58 ~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~---~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~ 134 (521)
....+++|.|.+|+.++++.- . ...+.+|||.+...- ......+||++++.. .-.|.. ++..++++|++
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~~-~----~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~E-L~~I~~--~~~~l~IGA~v 262 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAAH-P----DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAE-LKRIEE--TDDGIEIGAAV 262 (467)
T ss_pred CCceEECCCCHHHHHHHHhhC-C----CCEEEecCcchHHHHhcCCCCCCeEEECCCChh-hccEEE--cCCEEEEecCC
Confidence 345789999999999887632 1 247799999974221 122579999998543 222333 34679999999
Q ss_pred cHHHHHHHHHHhCC-C-----cccccCCCCcccccccccccc
Q 009956 135 LWEDVLKRCVEDFG-L-----APRSWTDYLRLTVGGTLSNAG 170 (521)
Q Consensus 135 ~~~~l~~~~~~~~g-~-----~p~~~~~~~~~tvGG~~~~~g 170 (521)
|+.++.+.+.++.. + ...++.--+.+||||+|+++.
T Consensus 263 T~~el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 263 TLTDAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS 304 (467)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC
Confidence 99998764443211 1 112233345689999999864
No 39
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=96.62 E-value=0.0097 Score=58.36 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=65.9
Q ss_pred cccccCcchhHHHHHHHHHHhhhcC-C--CCcEEEEecCCC-CCCCCcccccCCCceEEEEEeeCCCCCCCCcchHHHHH
Q 009956 378 LNMFVSKSNLAEFNRVVFNEILKDG-I--NGPMLVYPLLRS-KWDDRTSVMVPEEEIFYLVALLRFPPPHEDGASIKKLV 453 (521)
Q Consensus 378 ~d~~vp~~~l~~~~~~~~~~l~~~~-~--~~~i~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (521)
.+.+||.++..++++++.+.+.+.. . .-++.++.+.++ .| ++-..+...++..+....+.. ......
T Consensus 128 ~E~~iP~~~~~~~l~~l~~~~~~~~~~~~~~pie~R~~~~d~~~---Ls~~~~~~~~~i~~~~~~~~~------~~~~~~ 198 (259)
T PF04030_consen 128 MEYAIPIENAPEALRELRALIDKEGGFPVHFPIEVRFVKADDAW---LSPAYGRDTCYIEIHMYRPMG------DPVPYE 198 (259)
T ss_dssp EEEEEEGGGHHHHHHHHHHTHHHHG--GGEEEEEEEEE--B-ST---T-TTBTS-EEEEEEEE-S-HH---------HHH
T ss_pred EEEeeCHHHHHHHHHHHHHHHHHcccCceeEEEEEEEECCChhh---cCCCCCCCEEEEEEEEeCCcc------ccccHH
Confidence 4899999999999999985343333 1 224556655442 22 222222334555555553210 111245
Q ss_pred HHhHHHHHHHHHcCCcceecCCC--CCChHHHHHhhcchhhHHHHhhhccCCCCccCC
Q 009956 454 DQNRGIVQYCKDRGFDFKLFFPH--YKSEEEWKCHFGDRWTRFRDSKKAFDPKHILAP 509 (521)
Q Consensus 454 ~~~~~i~~~~~ehG~g~~~yl~~--~~~~~~~~~~yG~~~~~l~~iK~~~DP~~IlnP 509 (521)
+..+.+.++..+|| |+ ++..+ .....++++.| ++++.+.++|+++||+|+|..
T Consensus 199 ~~~~~~e~~~~~~g-gR-pHWgK~~~~~~~~l~~~Y-p~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 199 EFFRAFEQILRKYG-GR-PHWGKNHTLTAEQLRKLY-PRLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp HHHHHHHHHHGGGT--E-E-TTS-----HHHHHHT--TTHHHHHHHHHHH-TT-TT--
T ss_pred HHHHHHHHHHHHcC-CE-ECcCcCCCCCHHHHHHHC-cCHHHHHHHHHHhCCCCCCCC
Confidence 55666666667776 33 23222 34567778889 999999999999999999975
No 40
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.58 E-value=0.0054 Score=59.97 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=63.9
Q ss_pred EEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCC-CCCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHH
Q 009956 61 AVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQ-AMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDV 139 (521)
Q Consensus 61 ~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~-~~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l 139 (521)
-+++|+|.+|..++++. ++-.-.+.+|||.+... ......++||++++ . .-.|.. ++..++++|++|+.++
T Consensus 3 ~y~~P~sl~Ea~~ll~~----~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-e-L~~I~~--~~~~l~IGA~~t~~~l 74 (257)
T TIGR03312 3 QFFRPESTIQALELKKR----HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-A-LDKIEL--QGGALHIGAMCHLQSL 74 (257)
T ss_pred ceECCCCHHHHHHHHHh----CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-C-CCcEEe--cCCEEEEEeCCcHHHH
Confidence 36899999999887653 21123678999998532 22224689999885 3 223333 3468999999999998
Q ss_pred HHH------HHHhCCCcccccCCCCcccccccccccc
Q 009956 140 LKR------CVEDFGLAPRSWTDYLRLTVGGTLSNAG 170 (521)
Q Consensus 140 ~~~------~~~~~g~~p~~~~~~~~~tvGG~~~~~g 170 (521)
.+. +.+.-. ...++.--+.+|+||++.++.
T Consensus 75 ~~~~~~~~~L~~aa~-~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 75 IDNELTPAALKEALG-FVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred HhCcchHHHHHHHHH-HhCCHHHhccccHHHHhhcCC
Confidence 652 111100 111233334689999999763
No 41
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.74 E-value=0.017 Score=57.58 Aligned_cols=103 Identities=8% Similarity=0.086 Sum_probs=64.6
Q ss_pred EEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCC---CCCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHH
Q 009956 61 AVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQ---AMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWE 137 (521)
Q Consensus 61 ~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~---~~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~ 137 (521)
-+++|+|.+|..++++.- . ...+.+|||.+... .......+||++++.. .-.|... ++..++++|++|+.
T Consensus 6 ~~~~P~sl~Ea~~ll~~~-~----~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~e-L~~I~~~-~~~~l~IGA~vt~~ 78 (291)
T PRK09971 6 EYHEAATLEEAIELLADN-P----QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAE-LRGITLA-EDGSIRIGAATTFT 78 (291)
T ss_pred ceeCCCCHHHHHHHHHhC-C----CCEEEeccchHHHHHhCCCCCCCeEEEcCCChh-hhCeEec-CCCEEEEEeCCcHH
Confidence 689999999998887632 1 24679999997421 1123589999998543 2223310 23579999999999
Q ss_pred HHHHH--HHHhCC-C-----cccccCCCCcccccccccccc
Q 009956 138 DVLKR--CVEDFG-L-----APRSWTDYLRLTVGGTLSNAG 170 (521)
Q Consensus 138 ~l~~~--~~~~~g-~-----~p~~~~~~~~~tvGG~~~~~g 170 (521)
++.+. +.++.. + ...++.--+.+|+||++.++.
T Consensus 79 ~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 79 QIIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred HHhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 98752 111100 0 111222334689999999753
No 42
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=95.60 E-value=0.02 Score=57.61 Aligned_cols=102 Identities=15% Similarity=0.248 Sum_probs=64.3
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCC---CCCcEEEEcCCCCC-eeEEEeccCCceEEEEeCCc
Q 009956 59 PLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAM---ADRGLVIDMGSTGD-SHFEIVKVKGSTYLDVSGGA 134 (521)
Q Consensus 59 p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~---~~~gvvidl~~l~~-~~i~id~~~~~~~v~v~aG~ 134 (521)
+..+++|.|.+|..++++.. . .-.+.+|||.+...-. .....+||+.++.. ..|+.+ +..++++|+|
T Consensus 4 ~f~~~~P~sl~eA~~ll~~~-~----~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~----~~~l~IGA~v 74 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAAH-P----AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTL----ADGLRIGAGV 74 (321)
T ss_pred CceEECCCCHHHHHHHHhhC-C----CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEec----CCEEEEeccC
Confidence 34689999999998887632 2 2357999998632111 12579999997542 024443 3679999999
Q ss_pred cHHHHHHHHH--HhC-CC-----cccccCCCCccccccccccc
Q 009956 135 LWEDVLKRCV--EDF-GL-----APRSWTDYLRLTVGGTLSNA 169 (521)
Q Consensus 135 ~~~~l~~~~~--~~~-g~-----~p~~~~~~~~~tvGG~~~~~ 169 (521)
|+.+|.+.-. +.. .+ ...++.--+.+||||++.++
T Consensus 75 T~~~l~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 75 TLAALAEDALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred cHHHHhhChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 9999865311 110 01 11223333568999999964
No 43
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=95.38 E-value=0.013 Score=57.64 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCC--C--CCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHH
Q 009956 65 PSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQ--A--MADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVL 140 (521)
Q Consensus 65 P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~--~--~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~ 140 (521)
|.|.+|+.++++.. . ...+.+|||.+... . ......+||++++.. .-.|.. ++..++++|++|+.++.
T Consensus 1 P~sl~ea~~ll~~~-~----~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~e-L~~I~~--~~~~l~IGA~vt~~~l~ 72 (264)
T TIGR03199 1 PAALDEAWSLLEKA-P----DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDE-LKGIST--SDTHVSIGALTTLNECR 72 (264)
T ss_pred CCCHHHHHHHHHhC-C----CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChh-hCcEEe--cCCEEEEecCCcHHHHh
Confidence 78999988887743 2 24689999996422 1 122578999998654 234444 45789999999999986
Q ss_pred HHHH-Hh-C-CC-----cccccCCCCccccccccccc
Q 009956 141 KRCV-ED-F-GL-----APRSWTDYLRLTVGGTLSNA 169 (521)
Q Consensus 141 ~~~~-~~-~-g~-----~p~~~~~~~~~tvGG~~~~~ 169 (521)
+.-. .. . .+ ...++.--+.+|+||+++++
T Consensus 73 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 73 KNPLIKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hChHhHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 4211 11 0 01 11123334568999999875
No 44
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=95.26 E-value=0.22 Score=47.88 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=71.4
Q ss_pred cccccCCcc---c---cccccCcchhHHHHHHHHHHhhhcCC--------CCcEEEEecCC-CCCCCCcccccCCCceEE
Q 009956 368 NGMWDSPHP---W---LNMFVSKSNLAEFNRVVFNEILKDGI--------NGPMLVYPLLR-SKWDDRTSVMVPEEEIFY 432 (521)
Q Consensus 368 ~~lw~~r~~---~---~d~~vp~~~l~~~~~~~~~~l~~~~~--------~~~i~~~~~~~-~~~~~~~~~~~~dg~~~~ 432 (521)
..-|+.|.. + .+.+||.++..+++.++++ +.+... +-++.++-+.. +.|-.. ....+++
T Consensus 49 ~c~wd~r~~~g~~F~E~EyaVP~e~~~~aL~elr~-l~~~~~~~l~~~ev~fPIevR~vaADdawLSp-----~rDSv~I 122 (257)
T PLN00107 49 ACPWDPRIKHGEFFFQSAISVPLSGAAAFINDIKA-LRDIEPDALCGLELNYGVLLRYVRASPAHLGK-----EEDALDF 122 (257)
T ss_pred cCCCCccccCCcceEEEEEEecHHHHHHHHHHHHH-HHHhCcccccccccccCeEEEEecCcchhhCC-----CCCeEEE
Confidence 466766642 1 3789999999999999994 554321 11233443322 333211 2455666
Q ss_pred EEEeeCCC-CCCCCcchHHHHHHHhHHHHHH-HHHcCCcceecC-CCCCChHHHHHhhcchhhHHHHhhhccCCCCccCC
Q 009956 433 LVALLRFP-PPHEDGASIKKLVDQNRGIVQY-CKDRGFDFKLFF-PHYKSEEEWKCHFGDRWTRFRDSKKAFDPKHILAP 509 (521)
Q Consensus 433 ~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~-~~ehG~g~~~yl-~~~~~~~~~~~~yG~~~~~l~~iK~~~DP~~IlnP 509 (521)
.+...... ++ . ....+++..+++-++ ..++|-=. -|= .+.....++.+.| ++++.|.++|+++||+|+|.+
T Consensus 123 ~~~~yr~~~~~--~--~pr~~~~~f~eiEqial~kygGRP-HWGK~h~l~~~~l~~lY-Pr~~dFlavR~~lDP~G~F~N 196 (257)
T PLN00107 123 DLTYYRSKDDP--A--APRLHEDAMEEIEQMAILKYGALP-HWGKNRNAAFDGAIAKY-KKAGEFLKVKERLDPEGLFSS 196 (257)
T ss_pred EEEEecccCCc--c--ccccHHHHHHHHHHHHHHhcCCcC-CchhccCCCHHHHHHHC-cCHHHHHHHHHHhCCCCccCC
Confidence 66655432 11 0 111223344444443 33443211 010 1123345555666 688999999999999999976
Q ss_pred C
Q 009956 510 G 510 (521)
Q Consensus 510 g 510 (521)
.
T Consensus 197 ~ 197 (257)
T PLN00107 197 E 197 (257)
T ss_pred H
Confidence 4
No 45
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=94.20 E-value=0.24 Score=48.86 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=67.3
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCC---CCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCcc
Q 009956 59 PLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQA---MADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGAL 135 (521)
Q Consensus 59 p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~---~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~ 135 (521)
+..+++|.|.+|...+++.. . --.+.+|||++...- .....-+||++++......... +++.++++|-++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~-~----~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~--~g~~l~IGA~vt 75 (284)
T COG1319 3 NFEYYRPASVEEALNLLARA-P----DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTT--EGGSLRIGALVT 75 (284)
T ss_pred ceEEECCCCHHHHHHHHHhC-C----CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEee--cCCEEEEeeccc
Confidence 56789999999988887744 3 347889999976322 2236788999886420112222 356799999999
Q ss_pred HHHHHHHHHHhCCCc---------ccccCCCCcccccccccccc
Q 009956 136 WEDVLKRCVEDFGLA---------PRSWTDYLRLTVGGTLSNAG 170 (521)
Q Consensus 136 ~~~l~~~~~~~~g~~---------p~~~~~~~~~tvGG~~~~~g 170 (521)
+.+|.+.-.-+ ... ..++.--+.+|+||++.++-
T Consensus 76 ~~ei~~~~~~~-~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~ 118 (284)
T COG1319 76 LTEIARHPAVR-RIPPALSEAASAIASPQVRNRATIGGNLCNAD 118 (284)
T ss_pred HHHHHhChhhh-hhchHHHHHHHHhcChhhcceeeecchhccCC
Confidence 99986443222 121 11233345689999987653
No 46
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=93.55 E-value=0.16 Score=51.00 Aligned_cols=129 Identities=15% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCC---CCcEEEEcCCCCCeeEEEeccCCceEEEEeC
Q 009956 56 SYKPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMA---DRGLVIDMGSTGDSHFEIVKVKGSTYLDVSG 132 (521)
Q Consensus 56 ~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~---~~gvvidl~~l~~~~i~id~~~~~~~v~v~a 132 (521)
+.....++.|.+..|...++. .+.+ .++..|+|.+.--... .=..+|-..++.. .-.|+. ....++++|
T Consensus 200 ~~~~~r~~~P~~l~D~a~l~a---a~P~--AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~e-L~~i~~--~~~~l~iGA 271 (493)
T COG4630 200 GSGDDRFIVPATLADFADLLA---AHPG--ATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAE-LRRIEV--STGGLEIGA 271 (493)
T ss_pred cCCCceeEeeccHHHHHHHHh---hCCC--CEEEecCcchhhHHHHHHhhcCCeEEecchhh-hheeee--cCCcEEEcc
Confidence 344568999999999998865 3444 4667788876533222 1234455555443 334444 558899999
Q ss_pred CccHHHHHHHHHHhCCC----c--ccccCCCCcccccccccccccCCCCcccCccccceeeeEEEecCCc
Q 009956 133 GALWEDVLKRCVEDFGL----A--PRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTGNGD 196 (521)
Q Consensus 133 G~~~~~l~~~~~~~~g~----~--p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~~G~ 196 (521)
|+++.+.++.+.++.-. + ..+-.--+.+|+||+|+|++--+-+ ...=..++.++++-.|+
T Consensus 272 gvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDt----PPaLIALgA~ltLr~g~ 337 (493)
T COG4630 272 GVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDT----PPALIALGATLTLRSGD 337 (493)
T ss_pred CccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCC----CchhhhcCcEEEEEecC
Confidence 99999999888765111 1 1111122457999999986421111 01112456666665554
No 47
>PLN02906 xanthine dehydrogenase
Probab=93.55 E-value=0.12 Score=61.94 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=68.3
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCC---CCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCcc
Q 009956 59 PLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQA---MADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGAL 135 (521)
Q Consensus 59 p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~---~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~ 135 (521)
....++|.|.+|+.++++.. . + .++.+|||++...- .....++||++++.. .-.|.. ++..++++|++|
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~-~--~--a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~e-L~~I~~--~~~~l~IGA~vT 299 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEY-P--D--AKLVVGNTEVGIEMRFKNAQYPVLISPTHVPE-LNAIKV--KDDGLEIGAAVR 299 (1319)
T ss_pred CceEECcCCHHHHHHHHHhC-C--C--CEEEEcCchhHHHhhhccCCCCeEEECCCChh-hhcEEe--cCCEEEEecCCc
Confidence 34699999999999886632 2 2 46789999974322 123579999998543 223333 346799999999
Q ss_pred HHHHHHHHHHhC------------CC-----cccccCCCCcccccccccccc
Q 009956 136 WEDVLKRCVEDF------------GL-----APRSWTDYLRLTVGGTLSNAG 170 (521)
Q Consensus 136 ~~~l~~~~~~~~------------g~-----~p~~~~~~~~~tvGG~~~~~g 170 (521)
+.+|.+.+.+.- .+ ...++.--+.+||||+|+|+.
T Consensus 300 ~~el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 300 LSELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 999987533210 00 012233345789999999864
No 48
>PLN00192 aldehyde oxidase
Probab=93.37 E-value=0.2 Score=60.17 Aligned_cols=108 Identities=10% Similarity=0.040 Sum_probs=69.4
Q ss_pred CccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCC-CCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccH
Q 009956 58 KPLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQA-MADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALW 136 (521)
Q Consensus 58 ~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~-~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~ 136 (521)
.....++|.|.+|+.++++.. ...+-..++.+|||.+.-.- .....++||++++.. .-.|.. ++..++++|++|+
T Consensus 232 ~~~~~~~P~sl~ea~~ll~~~-~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~E-L~~I~~--~~~~l~IGA~vTl 307 (1344)
T PLN00192 232 SRYRWYTPVSVEELQSLLESN-NFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPE-LSMIRR--DEKGIEIGAVVTI 307 (1344)
T ss_pred CCceEECcCCHHHHHHHHHhC-CCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChh-hhcEEe--cCCEEEEeecCcH
Confidence 345799999999999886632 10112256789999974321 122479999998543 223333 3468999999999
Q ss_pred HHHHHHHHHhCC----Cc---------ccccCCCCcccccccccccc
Q 009956 137 EDVLKRCVEDFG----LA---------PRSWTDYLRLTVGGTLSNAG 170 (521)
Q Consensus 137 ~~l~~~~~~~~g----~~---------p~~~~~~~~~tvGG~~~~~g 170 (521)
.++.+.+... - .+ ..++.--+.+|+||+|+|+.
T Consensus 308 ~el~~~l~~~-~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 308 SKAIEALREE-SKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHHHHHHhh-ccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 9988664432 1 11 11223345789999999863
No 49
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=93.29 E-value=0.17 Score=60.69 Aligned_cols=103 Identities=10% Similarity=-0.008 Sum_probs=68.1
Q ss_pred cEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCC---CCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccH
Q 009956 60 LAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQA---MADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALW 136 (521)
Q Consensus 60 ~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~---~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~ 136 (521)
...++|.|.+|+.++++.. . .-++.+|||.+...- ......+||+++... .-.|.. ++..++++|++|+
T Consensus 237 ~~~~~P~tl~ea~~ll~~~-~----~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~E-L~~i~~--~~~~l~IGA~vT~ 308 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY-P----QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEE-LSVVNH--TGDGLTLGAGLSL 308 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC-C----CCEEEecCcchHHHhhhccCCCCeEEECCCChh-hhcEEE--cCCEEEEeccccH
Confidence 4699999999999886632 2 246789999975322 122458999998553 223443 4468999999999
Q ss_pred HHHHHHHHHh----C----C----C-----cccccCCCCcccccccccccc
Q 009956 137 EDVLKRCVED----F----G----L-----APRSWTDYLRLTVGGTLSNAG 170 (521)
Q Consensus 137 ~~l~~~~~~~----~----g----~-----~p~~~~~~~~~tvGG~~~~~g 170 (521)
.++.+.+.+. . . + ...++.--+.+|+||+|+|+.
T Consensus 309 ~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 309 AQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 9998753311 0 0 1 111233345789999999864
No 50
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=39.02 E-value=50 Score=32.33 Aligned_cols=19 Identities=21% Similarity=0.544 Sum_probs=13.1
Q ss_pred hHHHHhhhccCCCCccCCC
Q 009956 492 TRFRDSKKAFDPKHILAPG 510 (521)
Q Consensus 492 ~~l~~iK~~~DP~~IlnPg 510 (521)
..|++.=+++||.|.||||
T Consensus 263 p~L~~fY~~lDPtNsfNPG 281 (291)
T PF09330_consen 263 PALKAFYRKLDPTNSFNPG 281 (291)
T ss_dssp HHHHHHHHHH-TT--BSTT
T ss_pred HHHHHHHHhcCCCcCCCCC
Confidence 4567777889999999999
No 51
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=38.38 E-value=17 Score=37.88 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=19.8
Q ss_pred chhhHHHHhhhccCCCCccCCC
Q 009956 489 DRWTRFRDSKKAFDPKHILAPG 510 (521)
Q Consensus 489 ~~~~~l~~iK~~~DP~~IlnPg 510 (521)
.+.+.+.++|+.+||+++|..+
T Consensus 485 ~n~~~flkvr~~lDP~~lFsse 506 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSSE 506 (518)
T ss_pred cChHHHHHHHHhcCccchhhhh
Confidence 7889999999999999999654
No 52
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=36.87 E-value=2.2e+02 Score=31.08 Aligned_cols=135 Identities=16% Similarity=0.247 Sum_probs=77.3
Q ss_pred CCC-HHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCC--CCCee-EEEeccC-CceEEEE-----eCCc
Q 009956 65 PSG-ADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGS--TGDSH-FEIVKVK-GSTYLDV-----SGGA 134 (521)
Q Consensus 65 P~s-~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~--l~~~~-i~id~~~-~~~~v~v-----~aG~ 134 (521)
|.+ .+||.+-++.+ .+++-++...-+-.+++.--.| ..|+||-|- |=|.. --.++.. ...+..| -||+
T Consensus 308 p~~~~~eI~a~i~~~-~~~~P~laMVnSdkGITNLHvP-sDVIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sYA~v 385 (741)
T TIGR00178 308 PAAQQEEIEADLQAV-YAQRPELAMVNSDKGITNLHVP-SDVIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCYAGV 385 (741)
T ss_pred ChhhHHHHHHHHHHH-HhhCCCEEEeccCCCccccCCC-cCeEEecCcHHHHhccCCccCCCCCcccceeecCCccchHH
Confidence 444 46788889988 7777788888777766666665 789998653 21100 0011100 0112222 2444
Q ss_pred cHHHHHHHHHHhCCCc-ccccCCCCccccccccccccc-CCCCcccCcc-------ccceeeeEEEecCCcEEEecCCCC
Q 009956 135 LWEDVLKRCVEDFGLA-PRSWTDYLRLTVGGTLSNAGV-SGQAFRYGPQ-------ISNVAQLDVVTGNGDMVTCSESRQ 205 (521)
Q Consensus 135 ~~~~l~~~~~~~~g~~-p~~~~~~~~~tvGG~~~~~g~-g~~~~~~G~~-------~d~v~~~~~v~~~G~i~~~~~~~~ 205 (521)
- .++.+.|.++ |-+ |. --|.+.|-|. -...-.||+. .|- .++||+.+|+++..-.-+.
T Consensus 386 Y-q~~I~~ck~n-GafDp~---------TmGsV~NVGLMAqKAEEYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve~ 452 (741)
T TIGR00178 386 Y-QVVIEDCKQN-GAFDPT---------TMGTVPNVGLMAQKAEEYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVEA 452 (741)
T ss_pred H-HHHHHHHHhc-CCCCcc---------cccCCcchhHhHHHHHHhcCCCcceecCCCc--eEEEEeCCCCEEEEeeccC
Confidence 3 4557788888 765 53 3345665543 2222345543 222 3778899999887655455
Q ss_pred cchhhhhhc
Q 009956 206 PELFFNVLG 214 (521)
Q Consensus 206 ~dl~~~~~g 214 (521)
-|+|+++..
T Consensus 453 GDIwRmcq~ 461 (741)
T TIGR00178 453 GDIWRMCQV 461 (741)
T ss_pred Ccchhhhhc
Confidence 588877653
No 53
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=35.76 E-value=53 Score=25.22 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=23.5
Q ss_pred CceEEEEeCCccHHHHHHHHHHhCCCccc
Q 009956 124 GSTYLDVSGGALWEDVLKRCVEDFGLAPR 152 (521)
Q Consensus 124 ~~~~v~v~aG~~~~~l~~~~~~~~g~~p~ 152 (521)
....|.|.||.++.|++..+.++.|+.|.
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~l~~~ 38 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRGLNPE 38 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcCCCHH
Confidence 55789999999999999888855488653
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=33.91 E-value=1.2e+02 Score=21.81 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=28.2
Q ss_pred cceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHH
Q 009956 218 QFGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELL 256 (521)
Q Consensus 218 ~lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i 256 (521)
.+|.|..+.+...+........++.|.+.+++..++..+
T Consensus 21 ~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l 59 (70)
T PF00076_consen 21 QFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEEL 59 (70)
T ss_dssp TTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HhhhcccccccccccccccceEEEEEcCHHHHHHHHHHc
Confidence 466677766666544455677889999999988877755
No 55
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=32.95 E-value=60 Score=28.86 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=24.7
Q ss_pred EEEeCCCHHHHHHHHHHHHhcCCCeEEEE
Q 009956 61 AVIRPSGADDVAVVIKAAHLQSNLTVAAR 89 (521)
Q Consensus 61 ~vv~P~s~~ev~~~v~~a~~~~~~~v~~~ 89 (521)
.|+.|.+.+|+..++++| -+.+-|+.+|
T Consensus 126 ~v~~Ps~~~~~~~ll~~a-~~~~~P~~ir 153 (156)
T cd07033 126 TVLRPADANETAAALEAA-LEYDGPVYIR 153 (156)
T ss_pred EEEecCCHHHHHHHHHHH-HhCCCCEEEE
Confidence 689999999999999999 7666688877
No 56
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=27.91 E-value=89 Score=24.08 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=23.3
Q ss_pred CceEEEEeCCccHHHHHHHHHHhCCCccc
Q 009956 124 GSTYLDVSGGALWEDVLKRCVEDFGLAPR 152 (521)
Q Consensus 124 ~~~~v~v~aG~~~~~l~~~~~~~~g~~p~ 152 (521)
+...|.|.||+++.|.+.+++++.|+.|-
T Consensus 10 QrT~V~vrpG~tl~daL~KaLk~R~l~pe 38 (74)
T cd01816 10 QRTVVNVRPGMTLRDALAKALKVRGLQPE 38 (74)
T ss_pred CeEEEEecCCcCHHHHHHHHHHHcCCChh
Confidence 45679999999999988888865588753
No 57
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=27.35 E-value=85 Score=28.52 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=26.7
Q ss_pred cEEEeCCCHHHHHHHHHHHHhc--CCCeEEEEcCCC
Q 009956 60 LAVIRPSGADDVAVVIKAAHLQ--SNLTVAARGNGH 93 (521)
Q Consensus 60 ~~vv~P~s~~ev~~~v~~a~~~--~~~~v~~~G~G~ 93 (521)
..|+.|.+.+|+..+++++ -+ ..-|+++|-...
T Consensus 139 ~~v~~Psd~~e~~~~l~~a-~~~~~~~P~~ir~~r~ 173 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAA-IRRESDGPVYIREPRG 173 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHH-HHSSSSSEEEEEEESS
T ss_pred cccccCCCHHHHHHHHHHH-HHhCCCCeEEEEeeHH
Confidence 4699999999999999999 77 678988875443
No 58
>smart00455 RBD Raf-like Ras-binding domain.
Probab=27.12 E-value=90 Score=23.75 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=23.3
Q ss_pred CceEEEEeCCccHHHHHHHHHHhCCCccc
Q 009956 124 GSTYLDVSGGALWEDVLKRCVEDFGLAPR 152 (521)
Q Consensus 124 ~~~~v~v~aG~~~~~l~~~~~~~~g~~p~ 152 (521)
....|.+.||.++.|+++.+.++.|+.|.
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~ 38 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPE 38 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHH
Confidence 45679999999999999888855488553
No 59
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=26.62 E-value=1.6e+02 Score=34.85 Aligned_cols=122 Identities=9% Similarity=0.003 Sum_probs=68.0
Q ss_pred ccEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCC-CCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHH
Q 009956 59 PLAVIRPSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMA-DRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWE 137 (521)
Q Consensus 59 p~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~-~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~ 137 (521)
-..-..|.|.+|+.++.+ +........|-|.....--. .-.-.||.++... ...++. +...+.++|++++.
T Consensus 214 ~~~W~~P~sl~eL~~~~~-----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~e-l~~~~~--~~~gi~lGa~~sls 285 (1257)
T KOG0430|consen 214 GIRWYWPVSLEELFELKA-----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPE-LKALNV--DDNGLELGAALSLS 285 (1257)
T ss_pred CcEEeCcccHHHHHHHHh-----cCcceEEEeccccceEEeccCCCcceechhcCch-hhhccc--CCCceEEcccccHH
Confidence 345678999999998855 33344555555554322211 2456777776442 112222 33669999999999
Q ss_pred HHHHHHHHh---CC--Cc---------ccccCCCCcccccccccccccCCCCcccCccccceeeeEEEec
Q 009956 138 DVLKRCVED---FG--LA---------PRSWTDYLRLTVGGTLSNAGVSGQAFRYGPQISNVAQLDVVTG 193 (521)
Q Consensus 138 ~l~~~~~~~---~g--~~---------p~~~~~~~~~tvGG~~~~~g~g~~~~~~G~~~d~v~~~~~v~~ 193 (521)
+..+.+.+. .+ ++ .....--+.+|+||+|.+..-+. -..+|...-+.+.++
T Consensus 286 ~~~~~l~~~~~~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~~-----~f~SDl~~~l~a~~a 350 (1257)
T KOG0430|consen 286 ETMELLRKLVKRPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQSP-----EFPSDLFILLEALDA 350 (1257)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHhcccceeccccccceeEeccCCC-----CCchhHHHHHHhhcc
Confidence 987776643 11 00 11122234679999997654332 224555444444443
No 60
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=25.21 E-value=1.3e+02 Score=24.90 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCCcEEEEcCCCCCeeEEEeccCCceEEEEeCCccHHHHHHHHH
Q 009956 65 PSGADDVAVVIKAAHLQSNLTVAARGNGHSINGQAMADRGLVIDMGSTGDSHFEIVKVKGSTYLDVSGGALWEDVLKRCV 144 (521)
Q Consensus 65 P~s~~ev~~~v~~a~~~~~~~v~~~G~G~~~~g~~~~~~gvvidl~~l~~~~i~id~~~~~~~v~v~aG~~~~~l~~~~~ 144 (521)
-++..||..+++.. .+++.|++++- +++- . .+. + ++++|+ +++++....|..-.+ .+.++
T Consensus 4 ~~~p~eI~~~Lr~L-~~~~~~l~v~~-~~g~--------~-f~T-----~-iL~VD~--~~~~l~lD~~~~~~~-n~~~l 63 (108)
T PF07317_consen 4 LRNPREILAVLRDL-AKQRSPLTVRH-PRGQ--------S-FIT-----S-ILAVDP--DRGTLVLDEGSDEEE-NQRLL 63 (108)
T ss_dssp E-SHHHHHHHHHHH-HHTT--EEEET-T-SS--------E-EEE-------EEEEET--TTTEEEEE--BSGGG-HHHHH
T ss_pred ccCHHHHHHHHHHH-HhCCCeEEEEe-CCCC--------E-EEE-----E-EEEEeC--CCCEEEEEcCCChHH-HHHHh
Confidence 36789999999999 99999999983 2221 1 222 1 789999 888888888776555 33443
No 61
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=25.12 E-value=1.4e+02 Score=25.05 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=33.4
Q ss_pred hhhcccCCCCCCCccEEEeCCCHHHHHHHHHHHHhcCCCeE-EEEcCC
Q 009956 46 SADKDFGGMYSYKPLAVIRPSGADDVAVVIKAAHLQSNLTV-AARGNG 92 (521)
Q Consensus 46 ~~~~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v-~~~G~G 92 (521)
.+...|. ..+.+..|+...|++|+.++.+.| ++.+++. .++-+|
T Consensus 37 ~~~~~W~--~~G~~Kvvlkv~~~~el~~l~~~a-~~~~l~~~~v~DAG 81 (113)
T PRK04322 37 EWLEEWL--NEGQKKVVLKVNSEEELLELKEKA-ERLGLPTALIRDAG 81 (113)
T ss_pred HHHHHHH--HCCCcEEEEeCCCHHHHHHHHHHH-HHcCCCEEEEEeCC
Confidence 3344453 368899999999999999999999 9988874 334444
No 62
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=24.52 E-value=74 Score=29.33 Aligned_cols=24 Identities=4% Similarity=0.016 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCC
Q 009956 72 AVVIKAAHLQSNLTVAARGNGHSIN 96 (521)
Q Consensus 72 ~~~v~~a~~~~~~~v~~~G~G~~~~ 96 (521)
...++|+ +++++|+++.++|.+.-
T Consensus 79 Kef~e~i-ke~di~fiVvSsGm~~f 102 (220)
T COG4359 79 KEFVEWI-KEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHH-HHcCCCEEEEeCCCchH
Confidence 4567889 99999999999999854
No 63
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.20 E-value=1.4e+02 Score=27.45 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=28.8
Q ss_pred CCCCccEEEeCCCHHHHHHHHHHHHhcCCCeEE
Q 009956 55 YSYKPLAVIRPSGADDVAVVIKAAHLQSNLTVA 87 (521)
Q Consensus 55 ~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~v~ 87 (521)
..++|..|+..+|++++.++.+.| ++.+++..
T Consensus 121 ~~GQ~KIvvk~~~e~~l~~l~~~A-~~~gl~t~ 152 (190)
T KOG3282|consen 121 NCGQAKIVVKAESEEELMELQKDA-KKLGLYTH 152 (190)
T ss_pred HcCCceEEEEcCCHHHHHHHHHHH-HHcCCcEE
Confidence 468999999999999999999999 99888744
No 64
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=22.80 E-value=1.3e+02 Score=23.68 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=28.4
Q ss_pred eeeEEEecCCcEEEecCCCCcchhhhhhccCccceEEEEe
Q 009956 186 AQLDVVTGNGDMVTCSESRQPELFFNVLGGLGQFGIITRA 225 (521)
Q Consensus 186 ~~~~~v~~~G~i~~~~~~~~~dl~~~~~gs~G~lGiit~~ 225 (521)
..+..++-||+.++.+. +.||..+++-+.-..++|.+.
T Consensus 40 ~~vtYiDeD~D~ITlss--d~eL~d~~~~~~~~~~~v~k~ 77 (82)
T cd06397 40 VGVTYIDNDNDEITLSS--NKELQDFYRLSHRESTEVIKL 77 (82)
T ss_pred eEEEEEcCCCCEEEecc--hHHHHHHHHhcccccCceeEe
Confidence 46788999999999974 348888888665556666554
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=22.52 E-value=2.9e+02 Score=20.02 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=28.7
Q ss_pred ceEEEEeEEeeEecCCceEEEEEEeCCHHHHHHHHHHH
Q 009956 219 FGIITRARVLLQSAPDKVRWIRLVYAEFDEFTRDAELL 256 (521)
Q Consensus 219 lGiit~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~i 256 (521)
+|.|.++.+...+........++.|.+.+++.+++...
T Consensus 22 ~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 22 FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 45688888887665555777889999999887776643
No 66
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=22.02 E-value=1.3e+02 Score=23.15 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=22.7
Q ss_pred CceEEEEeCCccHHHHHHHHHHhCCCcc
Q 009956 124 GSTYLDVSGGALWEDVLKRCVEDFGLAP 151 (521)
Q Consensus 124 ~~~~v~v~aG~~~~~l~~~~~~~~g~~p 151 (521)
....|.+.||.++.|++..+.++.|+.+
T Consensus 10 ~~T~V~vrpG~ti~d~L~kllekRgl~~ 37 (73)
T cd01817 10 STTVVPTRPGESIRDLLSGLCEKRGINY 37 (73)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHcCCCh
Confidence 4567999999999999988886548854
No 67
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=21.64 E-value=1.4e+02 Score=32.19 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=27.4
Q ss_pred CCCccEEEeCCCHHHHHHHHHHHHhcC-CCeEEEE
Q 009956 56 SYKPLAVIRPSGADDVAVVIKAAHLQS-NLTVAAR 89 (521)
Q Consensus 56 ~~~p~~vv~P~s~~ev~~~v~~a~~~~-~~~v~~~ 89 (521)
.+.|-.++.|.|.++|.++++.| +++ ..||+++
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IA-ka~P~~pIilq 182 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIA-KANPTFPIILQ 182 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHH-hcCCCCceEEE
Confidence 47788999999999999999999 554 5677764
No 68
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=20.50 E-value=1.2e+02 Score=25.04 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=29.3
Q ss_pred CCCc-cEEEeCCCHHHHHHHHHHHHhcCCCeEEEEcCC
Q 009956 56 SYKP-LAVIRPSGADDVAVVIKAAHLQSNLTVAARGNG 92 (521)
Q Consensus 56 ~~~p-~~vv~P~s~~ev~~~v~~a~~~~~~~v~~~G~G 92 (521)
+..| ..+|++.+-.|++.++.+| ++.|+||...+.-
T Consensus 53 RRvP~~vLVr~~~~pd~~Hl~~LA-~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 53 RRVPWKVLVRDPDDPDLAHLLLLA-EEKGVPVEVYPDL 89 (100)
T ss_pred hcCCCEEEECCCCCccHHHHHHHH-HHcCCcEEEeCCC
Confidence 3344 4678888889999999999 9999999887643
Done!