BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009957
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2B|A Chain A, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|B Chain B, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|C Chain C, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|D Chain D, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|E Chain E, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|F Chain F, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2G|A Chain A, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
pdb|2C2G|B Chain B, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
Length = 486
Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/461 (91%), Positives = 436/461 (94%)
Query: 57 DENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESL 116
++NIRDEARR RS N FSAKYVPFNA P S E YSLDEIVYRSRSGGLLDV+HDME+L
Sbjct: 21 EDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDMEAL 80
Query: 117 KKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFG 176
K+FDGAYWRDLFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFG
Sbjct: 81 KRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFG 140
Query: 177 KQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALS 236
KQFLGMNDLWVKHCGISHTGSF DLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALS
Sbjct: 141 KQFLGMNDLWVKHCGISHTGSFXDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALS 200
Query: 237 AYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLA 296
AYCASAGIPSIVFLPANKIS+AQLVQPIANGAFVLSIDTDFDGCMKLIRE+T+ELPIYLA
Sbjct: 201 AYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLA 260
Query: 297 NSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMP 356
NSLNSLRLEGQKTAA+EILQQFDW+VPDWVIVPGGNLGNIYAFYKGFKMC ELGLVDR+P
Sbjct: 261 NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIP 320
Query: 357 RLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVE 416
R+VC QAANANPLYL+YKSGWKDFK + ASTTFASAIQIGDPVSIDRAVYALK CNGIVE
Sbjct: 321 RMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVE 380
Query: 417 EATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQ 476
EATEEELMDAMAQADSTGMFICPHTGVALTAL KLRN GVI P DRTVVVSTAHGLKFTQ
Sbjct: 381 EATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQ 440
Query: 477 SKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGS 517
SKIDYHS I DMACRF+NPPV VKADFGAVMDVLK YLGS
Sbjct: 441 SKIDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGS 481
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana
pdb|1E5X|B Chain B, Structure Of Threonine Synthase From Arabidopsis Thaliana
Length = 486
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/461 (88%), Positives = 423/461 (91%)
Query: 57 DENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESL 116
++NIRDEARR RS N FSAKYVPFNA P S E YSLDEIVYRSRSGGLLDV+HD E+L
Sbjct: 21 EDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSGGLLDVEHDXEAL 80
Query: 117 KKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFG 176
K+FDGAYWRDLFDSRVGK+TWPYGSGVWSKKEWVLPEID DDIVSAFEGNSNLFWAERFG
Sbjct: 81 KRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWAERFG 140
Query: 177 KQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALS 236
KQFLG NDLWVKHCGISHTGSFKDLG TVLVSQVNRLRK KRPVVGVGCASTGDTSAALS
Sbjct: 141 KQFLGXNDLWVKHCGISHTGSFKDLGXTVLVSQVNRLRKXKRPVVGVGCASTGDTSAALS 200
Query: 237 AYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLA 296
AYCASAGIPSIVFLPANKIS AQLVQPIANGAFVLSIDTDFDGC KLIRE+T+ELPIYLA
Sbjct: 201 AYCASAGIPSIVFLPANKISXAQLVQPIANGAFVLSIDTDFDGCXKLIREITAELPIYLA 260
Query: 297 NSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMP 356
NSLNSLRLEGQKTAA+EILQQFDW+VPDWVIVPGGNLGNIYAFYKGFK C ELGLVDR+P
Sbjct: 261 NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIP 320
Query: 357 RLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVE 416
R VC QAANANPLYL+YKSGWKDFK ASTTFASAIQIGDPVSIDRAVYALK CNGIVE
Sbjct: 321 RXVCAQAANANPLYLHYKSGWKDFKPXTASTTFASAIQIGDPVSIDRAVYALKKCNGIVE 380
Query: 417 EATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQ 476
EATEEEL DA AQADSTG FICPHTGVALTAL KLRN GVI P DRTVVVSTAHGLKFTQ
Sbjct: 381 EATEEELXDAXAQADSTGXFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQ 440
Query: 477 SKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLGS 517
SKIDYHS I D ACRF+NPPV VKADFGAV DVLK YLGS
Sbjct: 441 SKIDYHSNAIPDXACRFSNPPVDVKADFGAVXDVLKSYLGS 481
>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIM|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Orthorhombic Crystal Form
pdb|1UIN|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1UIN|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8, Trigonal Crystal Form
pdb|1V7C|A Chain A, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|B Chain B, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|C Chain C, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|1V7C|D Chain D, Crystal Structure Of Threonine Synthase From Thermus
Thermophilus Hb8 In Complex With A Substrate Analogue
pdb|3AEX|A Chain A, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEX|B Chain B, Catalytic Intermediate Analogue Of Threonine Synthase From
Thermus Thermophilus Hb8
pdb|3AEY|A Chain A, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
pdb|3AEY|B Chain B, Apo Form Of Threonine Synthase From Thermus Thermophilus
Hb8
Length = 351
Score = 184 bits (466), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 186/328 (56%), Gaps = 21/328 (6%)
Query: 150 VLPEIDPDDIVSAFEGNSNLF---WAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVL 206
+LP + ++S EG++ L E K+ + L+ K+ G++ TGSFKD GMT+
Sbjct: 12 LLPVSEKTPVISLLEGSTPLIPLKGPEEARKKGI---RLYAKYEGLNPTGSFKDRGMTLA 68
Query: 207 VSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIAN 266
VS+ ++ V CASTG+T+A+ +AY A AGI +IV LPA +++ ++ Q + +
Sbjct: 69 VSKA-----VEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVH 123
Query: 267 GAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWV 326
GA ++ ++ +FD ++L +++T P+ L NS+N RLEGQKT A E++ + + P +
Sbjct: 124 GARIVQVEGNFDDALRLTQKLTEAFPVALVNSVNPHRLEGQKTLAFEVVDELG-DAPHYH 182
Query: 327 IVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKAS 386
+P GN GNI A + G+K H LG R+PR++ QAA A PL L + V+
Sbjct: 183 ALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVL--------GRPVERP 234
Query: 387 TTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQ-ADSTGMFICPHTGVAL 445
T A+AI+IG+P S AV A + G++E T+EE++ A A G+F P + A+
Sbjct: 235 ETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAM 294
Query: 446 TALIKLRNSGVIGPLDRTVVVSTAHGLK 473
+ KL G + P V+ T HGLK
Sbjct: 295 AGVFKLLREGRLEPESTVVLTLTGHGLK 322
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/371 (33%), Positives = 198/371 (53%), Gaps = 27/371 (7%)
Query: 142 GVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDL 201
G+ + + LP + IV+ +EGN+ L A+ + +++K+ G++ TGSFKD
Sbjct: 6 GIIKQYKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDR 65
Query: 202 GMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLV 261
GMT+ +S+ + KR V+ CASTG+TSA+ +AY A AG+ + V LP ++I +L
Sbjct: 66 GMTLAISKA--VEAGKRAVI---CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLS 120
Query: 262 QPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWE 321
Q + GA VL+I FD + ++R++ P+ + NS+N R+EGQKTAA EI E
Sbjct: 121 QAMIYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLG-E 179
Query: 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFK 381
PD+ +P GN GNI A++KGFK+ +E G + ++PR++ QA A P+ Y
Sbjct: 180 APDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGY-------- 231
Query: 382 AVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADST-GMFICPH 440
+K T A+AI+IG+P S A+ A + G ++ ++ E++ A ST G+F P
Sbjct: 232 PIKNPQTIATAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPA 291
Query: 441 TGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQV 500
+ ++ LIKL G + T +GLK D A + P+ V
Sbjct: 292 SAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDP------------DTAIKVCEEPITV 339
Query: 501 KADFGAVMDVL 511
DF V+ VL
Sbjct: 340 PPDFDEVVKVL 350
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/339 (38%), Positives = 190/339 (56%), Gaps = 21/339 (6%)
Query: 137 WPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTG 196
WP GV + LP D V+ EG + L A KQ L V+ G++ TG
Sbjct: 12 WP---GVIAAYRDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVE--GLNPTG 66
Query: 197 SFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS 256
SFKD GMT+ V+ + L +R V+ CASTG+TSA+ +AY A AGI V +P KI+
Sbjct: 67 SFKDRGMTMAVT--DALAHGQRAVL---CASTGNTSASAAAYAARAGITCAVLIPQGKIA 121
Query: 257 IAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELP-IYLANSLNSLRLEGQKTAAVEIL 315
+ +L Q + +GA ++ ID +FD C++L R++ ++ P I L NS+N +R+EGQKTAA EI+
Sbjct: 122 MGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPTISLVNSVNPVRIEGQKTAAFEIV 181
Query: 316 QQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKS 375
PD +P GN GNI A++KG+ H+LGL+D++PR++ TQAA A PL L
Sbjct: 182 DVLG-TAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVL---- 236
Query: 376 GWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAM-AQADSTG 434
+ V T A+AI+IG P S AV A + G A++EE++ A A G
Sbjct: 237 ----GEPVSHPETIATAIRIGSPASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEG 292
Query: 435 MFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLK 473
+F+ P + ++ L+K + G + V T +GLK
Sbjct: 293 VFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNGLK 331
>pdb|1VB3|A Chain A, Crystal Structure Of Threonine Synthase From Escherichia
Coli
Length = 428
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 47/346 (13%)
Query: 195 TGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALS-AYCASAGIPSIVFLPAN 253
T +FKD G + + + +PV + A++GDT AA++ A+ + ++ P
Sbjct: 103 TLAFKDFGGRFMAQMLTHIAG-DKPVT-ILTATSGDTGAAVAHAFYGLPNVKVVILYPRG 160
Query: 254 KISIAQ--LVQPIANGAFVLSIDTDFDGCMKLIREV--TSELPIYL----ANSLNSLRLE 305
KIS Q L + ++ID DFD C L+++ EL + L ANS+N RL
Sbjct: 161 KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLL 220
Query: 306 GQKTAAVEILQQFDWEVPDWVI--VPGGNLGNIYAFYKGFKMCHELGL-VDRMPRLVCTQ 362
Q E + Q E + ++ VP GN G++ A + LGL V R + T
Sbjct: 221 AQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGL----LAKSLGLPVKRF--IAATN 274
Query: 363 AANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVS-------IDRAVYALKNCN-GI 414
+ P +L+ G KA +A T ++A+ + P + R ++ LK
Sbjct: 275 VNDTVPRFLH--DGQWSPKATQA--TLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAA 330
Query: 415 VEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKF 474
V++ T ++ M + + T PH VA AL N G G + + TAH KF
Sbjct: 331 VDDETTQQTMRELKELGYTSE---PHAAVAYRALRDQLNPGEYG-----LFLGTAHPAKF 382
Query: 475 TQSKIDYHSKEI---KDMACRFANPPV---QVKADFGAVMDVLKKY 514
+S + + K++A R A+ P+ + ADF A+ ++ +
Sbjct: 383 KESVEAILGETLDLPKELAER-ADLPLLSHNLPADFAALRKLMMNH 427
>pdb|4F4F|A Chain A, X-Ray Crystal Structure Of Plp Bound Threonine Synthase
From Brucella Melitensis
pdb|4F4F|B Chain B, X-Ray Crystal Structure Of Plp Bound Threonine Synthase
From Brucella Melitensis
Length = 468
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 133/327 (40%), Gaps = 66/327 (20%)
Query: 195 TGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTS-AALSAYCASAGIPSIVFLPAN 253
T +FKD+ M +L ++ + + + A++GDT AA+ A+ + P
Sbjct: 113 TLAFKDVAMQLLARMMDYVLAQRGERATIVGATSGDTGGAAIEAFGGRDNTDIFILFPNG 172
Query: 254 KISIAQLVQPIANG---AFVLSIDTDFDGCMKLIR------EVTSELPIYLANSLNSLRL 304
++S Q Q ++G LSI+ +FD C L++ E L + NS+N R+
Sbjct: 173 RVSPVQQRQMTSSGFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSGVNSINWARI 232
Query: 305 EGQK----TAAVEILQQFDWEVPDWVI---VPGGNLGNIYAFYKGFKMCHELGLVDRMPR 357
Q TAA+ + PD + VP GN G+I+A Y +M +P
Sbjct: 233 MPQVVYYFTAALSL------GAPDRAVSFTVPTGNFGDIFAGYVAKRMG--------LPI 278
Query: 358 LVCTQAANANP-LYLYYKSGWKDFKAVKASTTFASAIQIG-------------DPVSIDR 403
A N N L +SG + + V +T+ + IQI D ++
Sbjct: 279 EQLIIATNDNDILSRTLESGAYEMRGVAQTTSPSMDIQISSNFERLLFEAHGRDAAAVRG 338
Query: 404 AVYALKNCNG--IVEE---ATEEELMDAMAQADST-----------GMFICPHTGVALTA 447
+ LK G I E+ A E + D T G + PH+ + +
Sbjct: 339 LMQGLKQSGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVLSKDGYLLDPHSAIGVK- 397
Query: 448 LIKLRNSGVIGPLDRTVVVSTAHGLKF 474
+ + + SG P+ VV++TAH KF
Sbjct: 398 VAREKASGT-APM---VVLATAHPAKF 420
>pdb|1KL7|A Chain A, Crystal Structure Of Threonine Synthase From Yeast
pdb|1KL7|B Chain B, Crystal Structure Of Threonine Synthase From Yeast
Length = 514
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 117/310 (37%), Gaps = 57/310 (18%)
Query: 217 KRPVVGVGCASTGDT-SAALSAYCASAGIPSIVFLPANKISIAQLVQPIA---NGAFVLS 272
K+ + VG A++GDT SAA+ + + P +IS Q Q LS
Sbjct: 151 KKQITVVG-ATSGDTGSAAIYGLRGKKDVSVFILYPTGRISPIQEEQXTTVPDENVQTLS 209
Query: 273 IDTDFDGCMKLIR------EVTSELPIYLANSLNSLRLEGQKTAAV-EILQQFDWEVPDW 325
+ FD C +++ E S+ + NS+N R+ Q T Q + +
Sbjct: 210 VTGTFDNCQDIVKAIFGDKEFNSKHNVGAVNSINWARILAQXTYYFYSFFQATNGKDSKK 269
Query: 326 V--IVPGGNLGNIYAFYKGFKMCHEL-------------------GLVDRMPRLVCTQ-- 362
V +VP GN G+I A Y K + GL +R ++ T
Sbjct: 270 VKFVVPSGNFGDILAGYFAKKXGLPIEKLAIATNENDILDRFLKSGLYERSDKVAATLSP 329
Query: 363 ------AANANPLYLY----YKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCN 412
++N L Y Y + D KA + + ++ +D+++ + +
Sbjct: 330 AXDILISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKD 389
Query: 413 GIVEEATEEELMDAMAQADSTGM-----FICPHTGVALTA---LIKLRNSGVIGPLDRTV 464
E + EE + + + + + + PHT V + A LI N I + +
Sbjct: 390 FTSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERLIAKDNDKSI----QYI 445
Query: 465 VVSTAHGLKF 474
+STAH KF
Sbjct: 446 SLSTAHPAKF 455
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 35/206 (16%)
Query: 124 WRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMN 183
W++L R T PY K+ + +D +A G+ N+ ER G+ LG N
Sbjct: 58 WQNL---RGCVVTVPY-------KQALANRVDGLSERAAALGSINVIRRERDGR-LLGDN 106
Query: 184 DLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243
G +H F+ G LV +GC G +A++ A AG
Sbjct: 107 VDGAGFLGAAHKHGFEPAGKRALV---------------IGCGGVG---SAIAYALAEAG 148
Query: 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLR 303
I SI + + + + + NG L++ T F G ++ V + P+ + R
Sbjct: 149 IASITLCDPSTARMGAVCELLGNGFPGLTVSTQFSG-LEDFDLVANASPVGMGT-----R 202
Query: 304 LEGQKTAAVEILQQFDWEVPDWVIVP 329
E +AA+ Q D V D V P
Sbjct: 203 AELPLSAALLATLQPDTLVADVVTSP 228
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 227 STGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDF-----DGCM 281
++G+T L+ CA G I+ +P K+S ++ GA ++ T+ +G +
Sbjct: 120 TSGNTGIGLAMACAVKGYKCIIVMP-EKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLI 178
Query: 282 KLIREVTSELPIYLANSLNSLRLEGQKTA-----AVEILQQFDWEVPDWVIVPGGNLGNI 336
+ +++ E P + L+ R G A A EIL Q D +V D ++V G G I
Sbjct: 179 YVAQQLQRETPNSIV--LDQYRNAGNPLAHYDGTAAEILWQLDNKV-DMIVVSAGTAGTI 235
Query: 337 YAFYKGFK 344
+ K
Sbjct: 236 SGIGRKIK 243
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 182 MNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVG--VGCASTGDTSAALSAYC 239
M ++WVK G++ GS KD ++ R + RP G + ++G+T L+
Sbjct: 23 MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEE-RGILRPGSGQVIVEPTSGNTGIGLAMIA 81
Query: 240 ASAGIPSIVFLPAN 253
AS G I+ +PA
Sbjct: 82 ASRGYRLILTMPAQ 95
>pdb|4GA7|A Chain A, Crystal Structure Of Human Serpinb1 Mutant
pdb|4GA7|B Chain B, Crystal Structure Of Human Serpinb1 Mutant
Length = 389
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 350 GLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFA 390
G+VD M +LV A +Y+K WKD K +K +TT A
Sbjct: 161 GMVDNMTKLVLVNA-------IYFKGNWKD-KFMKEATTNA 193
>pdb|2UZ1|B Chain B, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|C Chain C, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 213 LRKMKRPVVGVGC-ASTGDTSAALSAYCASAGIP 245
LRK +RPV+ +G AS ALSA+ A+ G+P
Sbjct: 201 LRKAERPVIVLGSEASRTARKTALSAFVAATGVP 234
>pdb|2AG0|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2AG0|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Native
pdb|2UZ1|A Chain A, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
pdb|2UZ1|D Chain D, 1.65 Angstrom Structure Of Benzaldehyde Lyase Complexed
With 2-Methyl-2,4-Pentanediol
Length = 563
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 213 LRKMKRPVVGVGC-ASTGDTSAALSAYCASAGIP 245
LRK +RPV+ +G AS ALSA+ A+ G+P
Sbjct: 201 LRKAERPVIVLGSEASRTARKTALSAFVAATGVP 234
>pdb|3IAF|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|C Chain C, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
pdb|3IAF|D Chain D, Structure Of Benzaldehyde Lyase A28s Mutant With
Monomethyl Benzoylphosphonate
Length = 570
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 213 LRKMKRPVVGVGC-ASTGDTSAALSAYCASAGIP 245
LRK +RPV+ +G AS ALSA+ A+ G+P
Sbjct: 201 LRKAERPVIVLGSEASRTARKTALSAFVAATGVP 234
>pdb|3IAE|A Chain A, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
pdb|3IAE|B Chain B, Structure Of Benzaldehyde Lyase A28s Mutant With
Benzoylphosphonate
Length = 570
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 213 LRKMKRPVVGVGC-ASTGDTSAALSAYCASAGIP 245
LRK +RPV+ +G AS ALSA+ A+ G+P
Sbjct: 201 LRKAERPVIVLGSEASRTARKTALSAFVAATGVP 234
>pdb|3D7K|A Chain A, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
pdb|3D7K|B Chain B, Crystal Structure Of Benzaldehyde Lyase In Complex With
The Inhibitor Mbp
Length = 570
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 213 LRKMKRPVVGVGC-ASTGDTSAALSAYCASAGIP 245
LRK +RPV+ +G AS ALSA+ A+ G+P
Sbjct: 201 LRKAERPVIVLGSEASRTARKTALSAFVAATGVP 234
>pdb|2AG1|A Chain A, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|B Chain B, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|C Chain C, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
pdb|2AG1|D Chain D, Crystal Structure Of Benzaldehyde Lyase (Bal)- Semet
Length = 563
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 213 LRKMKRPVVGVGC-ASTGDTSAALSAYCASAGIP 245
LRK +RPV+ +G AS ALSA+ A+ G+P
Sbjct: 201 LRKAERPVIVLGSEASRTARKTALSAFVAATGVP 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,401,606
Number of Sequences: 62578
Number of extensions: 638594
Number of successful extensions: 1596
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1575
Number of HSP's gapped (non-prelim): 21
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)