Query 009957
Match_columns 521
No_of_seqs 261 out of 2102
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 19:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02569 threonine synthase 100.0 6.8E-95 1.5E-99 777.8 47.7 473 44-516 11-483 (484)
2 PRK07591 threonine synthase; V 100.0 1.8E-75 3.8E-80 621.8 40.2 408 71-513 7-420 (421)
3 PRK06260 threonine synthase; V 100.0 2.2E-75 4.8E-80 617.7 40.0 390 84-512 5-396 (397)
4 COG0498 ThrC Threonine synthas 100.0 6.6E-76 1.4E-80 614.0 30.5 404 77-513 1-410 (411)
5 PRK08197 threonine synthase; V 100.0 2.7E-74 5.9E-79 608.8 38.2 379 84-482 9-391 (394)
6 PRK08329 threonine synthase; V 100.0 2.7E-69 5.9E-74 561.6 36.7 343 84-474 3-346 (347)
7 PRK05638 threonine synthase; V 100.0 6.2E-69 1.4E-73 575.7 38.4 356 84-475 3-359 (442)
8 PRK06450 threonine synthase; V 100.0 8.5E-69 1.8E-73 554.9 35.7 331 84-474 5-337 (338)
9 TIGR03844 cysteate_syn cysteat 100.0 2.5E-68 5.4E-73 561.6 35.7 360 84-476 4-384 (398)
10 PRK09225 threonine synthase; V 100.0 2.9E-64 6.3E-69 537.0 33.5 405 77-515 1-460 (462)
11 cd01560 Thr-synth_2 Threonine 100.0 2.7E-63 5.8E-68 529.9 32.3 375 78-482 1-426 (460)
12 TIGR00260 thrC threonine synth 100.0 1.8E-60 3.9E-65 492.2 31.8 325 143-476 1-328 (328)
13 PRK07409 threonine synthase; V 100.0 1.9E-59 4.1E-64 489.2 37.9 346 138-511 4-350 (353)
14 PRK06352 threonine synthase; V 100.0 1.6E-59 3.5E-64 488.9 36.4 326 140-483 3-329 (351)
15 PRK06721 threonine synthase; R 100.0 1.1E-57 2.4E-62 475.4 37.6 346 140-515 3-350 (352)
16 cd01563 Thr-synth_1 Threonine 100.0 2.6E-57 5.7E-62 467.9 34.7 322 143-474 1-324 (324)
17 PRK02991 D-serine dehydratase; 100.0 1.5E-52 3.3E-57 445.6 31.6 331 143-483 53-435 (441)
18 PRK06381 threonine synthase; V 100.0 1E-51 2.2E-56 425.4 34.6 295 164-470 13-317 (319)
19 cd06448 L-Ser-dehyd Serine deh 100.0 1.5E-51 3.3E-56 423.4 34.0 302 166-481 1-312 (316)
20 PRK06110 hypothetical protein; 100.0 3.5E-51 7.6E-56 422.0 32.2 299 162-482 17-316 (322)
21 TIGR02991 ectoine_eutB ectoine 100.0 1.7E-50 3.7E-55 415.8 33.2 293 164-478 17-311 (317)
22 PRK08206 diaminopropionate amm 100.0 4.2E-50 9E-55 424.4 34.3 308 163-481 41-392 (399)
23 PLN02970 serine racemase 100.0 2.3E-50 5.1E-55 416.7 31.7 294 164-478 25-322 (328)
24 PRK12483 threonine dehydratase 100.0 2.8E-50 6.1E-55 435.3 33.4 293 164-475 35-329 (521)
25 PRK08638 threonine dehydratase 100.0 3.3E-50 7.2E-55 415.9 31.4 295 164-479 25-321 (333)
26 PRK08526 threonine dehydratase 100.0 6.9E-50 1.5E-54 422.7 33.6 295 164-480 18-314 (403)
27 PLN02550 threonine dehydratase 100.0 5.2E-50 1.1E-54 435.7 33.5 293 163-474 106-400 (591)
28 PRK07476 eutB threonine dehydr 100.0 8.6E-50 1.9E-54 411.6 32.3 293 164-478 17-312 (322)
29 PRK06382 threonine dehydratase 100.0 9.6E-50 2.1E-54 423.2 33.2 295 163-480 22-318 (406)
30 PRK07048 serine/threonine dehy 100.0 8E-50 1.7E-54 411.8 31.6 293 163-478 21-315 (321)
31 TIGR01747 diampropi_NH3ly diam 100.0 1.9E-49 4E-54 415.7 34.8 305 165-478 21-370 (376)
32 PRK08813 threonine dehydratase 100.0 1.1E-49 2.3E-54 412.2 31.7 279 164-480 37-317 (349)
33 PLN02565 cysteine synthase 100.0 2E-49 4.2E-54 408.3 31.5 292 160-478 9-306 (322)
34 PRK06815 hypothetical protein; 100.0 2.3E-49 4.9E-54 407.7 31.6 290 164-474 18-309 (317)
35 TIGR01124 ilvA_2Cterm threonin 100.0 2.7E-49 5.9E-54 427.6 33.8 293 164-475 15-309 (499)
36 COG1171 IlvA Threonine dehydra 100.0 1.2E-49 2.6E-54 405.0 28.6 293 165-475 24-318 (347)
37 cd01562 Thr-dehyd Threonine de 100.0 2.2E-49 4.8E-54 404.9 30.7 287 164-472 15-303 (304)
38 TIGR02079 THD1 threonine dehyd 100.0 3.9E-49 8.5E-54 418.4 33.5 298 161-480 11-313 (409)
39 PRK08198 threonine dehydratase 100.0 4.1E-49 8.9E-54 418.5 33.1 295 163-480 19-315 (404)
40 cd06447 D-Ser-dehyd D-Serine d 100.0 5.4E-49 1.2E-53 413.9 32.6 305 159-472 45-401 (404)
41 TIGR01127 ilvA_1Cterm threonin 100.0 5.7E-49 1.2E-53 414.3 32.3 289 167-478 1-291 (380)
42 PRK09224 threonine dehydratase 100.0 5.8E-49 1.3E-53 426.5 32.8 293 164-475 18-312 (504)
43 PRK08246 threonine dehydratase 100.0 7.5E-49 1.6E-53 402.5 31.6 284 163-473 20-305 (310)
44 PRK10717 cysteine synthase A; 100.0 3.9E-49 8.4E-54 408.1 29.4 296 161-479 8-316 (330)
45 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.1E-48 2.4E-53 414.6 32.7 307 159-474 63-423 (431)
46 PRK06608 threonine dehydratase 100.0 1.8E-48 3.9E-53 403.7 33.2 295 164-480 21-317 (338)
47 PRK08639 threonine dehydratase 100.0 1.1E-48 2.3E-53 416.7 32.0 295 163-478 22-322 (420)
48 PRK07334 threonine dehydratase 100.0 1.5E-48 3.2E-53 413.8 31.8 292 164-480 21-314 (403)
49 TIGR03528 2_3_DAP_am_ly diamin 100.0 6E-48 1.3E-52 406.9 33.5 304 165-478 40-389 (396)
50 cd01561 CBS_like CBS_like: Thi 100.0 4.2E-48 9.1E-53 393.7 30.7 282 165-476 1-291 (291)
51 TIGR01136 cysKM cysteine synth 100.0 9.3E-48 2E-52 392.6 31.4 285 164-477 5-296 (299)
52 PLN02356 phosphateglycerate ki 100.0 3E-47 6.5E-52 400.7 32.5 295 164-480 51-402 (423)
53 TIGR01415 trpB_rel pyridoxal-p 100.0 3.1E-47 6.8E-52 403.2 32.3 327 141-483 46-417 (419)
54 PRK11761 cysM cysteine synthas 100.0 2.5E-47 5.5E-52 388.7 29.7 278 163-477 9-291 (296)
55 TIGR01139 cysK cysteine syntha 100.0 3.5E-47 7.6E-52 388.2 29.3 284 163-477 4-295 (298)
56 PLN03013 cysteine synthase 100.0 1.4E-46 2.9E-51 395.9 32.7 291 160-478 117-415 (429)
57 PLN02556 cysteine synthase/L-3 100.0 2.1E-46 4.6E-51 391.6 32.0 294 158-478 51-350 (368)
58 TIGR01138 cysM cysteine syntha 100.0 2.4E-46 5.2E-51 380.6 30.8 277 164-477 6-287 (290)
59 PLN00011 cysteine synthase 100.0 5.4E-46 1.2E-50 383.4 30.3 288 162-477 13-307 (323)
60 cd00640 Trp-synth-beta_II Tryp 100.0 3.7E-45 8.1E-50 362.5 30.4 241 167-470 1-244 (244)
61 PF00291 PALP: Pyridoxal-phosp 100.0 1.9E-45 4.1E-50 375.1 25.6 292 160-469 1-306 (306)
62 cd06446 Trp-synth_B Tryptophan 100.0 7.9E-45 1.7E-49 380.6 30.3 301 161-477 29-364 (365)
63 TIGR00263 trpB tryptophan synt 100.0 1.3E-44 2.9E-49 380.9 32.0 306 159-480 43-383 (385)
64 PLN02618 tryptophan synthase, 100.0 6.1E-44 1.3E-48 375.5 32.9 301 165-482 65-406 (410)
65 PRK12391 tryptophan synthase s 100.0 1.1E-43 2.4E-48 376.6 34.3 359 104-482 23-425 (427)
66 TIGR01137 cysta_beta cystathio 100.0 3.3E-44 7.2E-49 386.3 29.4 292 164-479 9-310 (454)
67 KOG1250 Threonine/serine dehyd 100.0 7.7E-44 1.7E-48 359.7 28.1 293 165-477 65-359 (457)
68 PRK13028 tryptophan synthase s 100.0 2.8E-43 6.1E-48 370.4 32.5 303 160-482 56-397 (402)
69 PRK04346 tryptophan synthase s 100.0 2.9E-43 6.2E-48 369.7 32.1 306 161-482 53-393 (397)
70 COG0031 CysK Cysteine synthase 100.0 1.1E-42 2.5E-47 348.2 28.7 281 165-476 10-299 (300)
71 KOG1251 Serine racemase [Signa 100.0 4.7E-43 1E-47 334.1 22.2 286 166-473 25-312 (323)
72 PRK12390 1-aminocyclopropane-1 100.0 5.3E-42 1.2E-46 355.8 24.6 288 160-470 9-324 (337)
73 PRK13802 bifunctional indole-3 100.0 1E-40 2.2E-45 368.8 32.7 302 164-482 323-673 (695)
74 PRK03910 D-cysteine desulfhydr 100.0 1.8E-41 4E-46 351.0 22.5 290 160-472 9-320 (331)
75 TIGR01274 ACC_deam 1-aminocycl 100.0 4.2E-41 9E-46 349.1 25.0 289 160-470 8-323 (337)
76 PRK13803 bifunctional phosphor 100.0 2.6E-40 5.7E-45 365.8 31.5 305 161-482 266-605 (610)
77 TIGR01275 ACC_deam_rel pyridox 100.0 1.6E-40 3.4E-45 341.2 24.0 284 162-472 3-302 (311)
78 cd06449 ACCD Aminocyclopropane 100.0 2.8E-40 6E-45 338.8 22.6 280 167-470 1-307 (307)
79 PRK14045 1-aminocyclopropane-1 100.0 2.8E-35 6.1E-40 304.5 24.6 284 159-470 14-314 (329)
80 KOG1252 Cystathionine beta-syn 100.0 7.8E-34 1.7E-38 283.3 20.8 287 162-477 48-347 (362)
81 KOG1481 Cysteine synthase [Ami 100.0 7.2E-33 1.6E-37 268.6 21.1 296 163-477 46-365 (391)
82 COG0133 TrpB Tryptophan syntha 100.0 2.5E-28 5.5E-33 241.3 23.4 306 160-483 50-391 (396)
83 KOG1395 Tryptophan synthase be 99.9 4.4E-27 9.6E-32 234.5 18.8 312 160-488 116-464 (477)
84 COG1350 Predicted alternative 99.9 3.5E-24 7.5E-29 212.4 21.0 308 163-485 75-429 (432)
85 COG3048 DsdA D-serine dehydrat 99.9 3E-22 6.5E-27 196.9 19.0 290 183-481 101-438 (443)
86 COG2515 Acd 1-aminocyclopropan 99.9 1.2E-20 2.6E-25 186.9 18.3 285 160-470 9-312 (323)
87 KOG2616 Pyridoxalphosphate-dep 99.8 2.1E-19 4.6E-24 169.3 10.6 215 244-517 1-263 (266)
88 PF14821 Thr_synth_N: Threonin 96.6 0.00045 9.8E-09 56.8 -0.5 44 78-128 1-46 (79)
89 PRK00398 rpoP DNA-directed RNA 85.7 0.67 1.4E-05 33.8 2.3 29 77-109 2-33 (46)
90 TIGR00373 conserved hypothetic 85.3 0.27 5.9E-06 45.8 0.1 34 72-109 103-140 (158)
91 PRK06266 transcription initiat 85.2 0.28 6.1E-06 46.6 0.2 34 74-112 113-150 (178)
92 PF03808 Glyco_tran_WecB: Glyc 81.8 3.3 7.1E-05 38.9 5.9 101 232-336 13-115 (172)
93 smart00531 TFIIE Transcription 78.9 0.88 1.9E-05 41.8 0.9 33 73-109 94-135 (147)
94 PF05368 NmrA: NmrA-like famil 73.7 19 0.00041 34.8 8.9 97 223-327 2-99 (233)
95 cd06533 Glyco_transf_WecG_TagA 70.6 12 0.00025 35.2 6.3 102 232-336 11-113 (171)
96 PRK07523 gluconate 5-dehydroge 68.9 62 0.0013 31.4 11.4 56 221-276 12-67 (255)
97 cd00350 rubredoxin_like Rubred 68.4 3.4 7.4E-05 27.9 1.6 21 85-105 4-25 (33)
98 PF04127 DFP: DNA / pantothena 66.5 25 0.00055 33.6 7.7 66 219-292 19-84 (185)
99 cd08210 RLP_RrRLP Ribulose bis 64.3 1.7E+02 0.0037 31.1 14.1 67 186-253 157-228 (364)
100 PTZ00323 NAD+ synthase; Provis 64.2 1.8E+02 0.0038 30.0 13.8 37 312-350 150-186 (294)
101 TIGR00696 wecB_tagA_cpsF bacte 59.7 32 0.0007 32.6 7.0 100 232-334 13-112 (177)
102 COG0052 RpsB Ribosomal protein 59.7 82 0.0018 31.6 9.9 34 264-298 61-94 (252)
103 PRK12496 hypothetical protein; 59.5 6 0.00013 37.1 2.0 48 56-107 97-153 (164)
104 PRK08063 enoyl-(acyl carrier p 59.4 1.5E+02 0.0032 28.5 12.0 56 221-276 6-62 (250)
105 TIGR00100 hypA hydrogenase nic 58.7 5.2 0.00011 35.2 1.3 42 65-106 52-95 (115)
106 PRK03824 hypA hydrogenase nick 58.5 5.8 0.00012 36.0 1.6 18 74-95 66-83 (135)
107 PRK12380 hydrogenase nickel in 58.4 5.5 0.00012 35.0 1.4 37 70-106 57-95 (113)
108 smart00659 RPOLCX RNA polymera 57.9 8.2 0.00018 28.0 2.0 28 77-108 1-30 (44)
109 PF09845 DUF2072: Zn-ribbon co 54.7 5.9 0.00013 35.6 1.0 24 84-107 3-29 (131)
110 PF00107 ADH_zinc_N: Zinc-bind 53.6 54 0.0012 28.2 7.1 29 313-341 49-77 (130)
111 cd08205 RuBisCO_IV_RLP Ribulos 53.2 1.9E+02 0.0041 30.7 12.2 66 186-253 162-233 (367)
112 KOG3507 DNA-directed RNA polym 52.1 11 0.00023 29.1 1.8 28 73-104 15-44 (62)
113 PF01155 HypA: Hydrogenase exp 51.6 3.4 7.3E-05 36.3 -1.0 44 64-107 51-96 (113)
114 PF03668 ATP_bind_2: P-loop AT 51.4 2E+02 0.0043 29.5 11.5 100 269-376 2-102 (284)
115 PRK12939 short chain dehydroge 51.3 2E+02 0.0044 27.4 11.4 29 221-249 9-37 (250)
116 PRK12828 short chain dehydroge 50.7 90 0.0019 29.6 8.8 70 221-290 9-79 (239)
117 PF08541 ACP_syn_III_C: 3-Oxoa 48.8 22 0.00048 29.1 3.6 35 441-475 50-84 (90)
118 TIGR00375 conserved hypothetic 48.4 8.1 0.00018 41.1 1.0 31 78-109 237-270 (374)
119 PRK00564 hypA hydrogenase nick 47.6 9.7 0.00021 33.6 1.2 36 71-106 59-97 (117)
120 cd00729 rubredoxin_SM Rubredox 47.4 13 0.00027 25.5 1.5 25 78-106 2-27 (34)
121 PF14446 Prok-RING_1: Prokaryo 47.2 17 0.00036 27.7 2.2 26 82-107 5-31 (54)
122 PRK05557 fabG 3-ketoacyl-(acyl 47.1 2.5E+02 0.0055 26.5 12.5 57 221-277 7-64 (248)
123 PRK12481 2-deoxy-D-gluconate 3 46.7 1.1E+02 0.0025 29.7 8.9 65 221-287 10-77 (251)
124 PF05191 ADK_lid: Adenylate ki 45.9 10 0.00022 26.3 0.9 25 84-108 3-32 (36)
125 PRK03681 hypA hydrogenase nick 45.9 11 0.00023 33.2 1.3 37 70-106 57-96 (114)
126 PRK13394 3-hydroxybutyrate deh 45.6 73 0.0016 30.9 7.3 59 220-278 8-66 (262)
127 PRK06182 short chain dehydroge 45.3 1.2E+02 0.0026 29.8 9.0 67 221-291 5-72 (273)
128 TIGR02098 MJ0042_CXXC MJ0042 f 44.9 20 0.00044 24.6 2.3 26 84-109 4-37 (38)
129 PRK07109 short chain dehydroge 43.5 89 0.0019 32.3 7.9 71 221-291 10-83 (334)
130 TIGR01064 pyruv_kin pyruvate k 43.5 1.8E+02 0.0039 32.0 10.5 49 222-275 376-425 (473)
131 PRK05565 fabG 3-ketoacyl-(acyl 43.3 2.9E+02 0.0064 26.1 12.2 32 221-252 7-38 (247)
132 cd06388 PBP1_iGluR_AMPA_GluR4 43.2 3.5E+02 0.0076 28.4 12.5 49 192-248 44-92 (371)
133 COG1996 RPC10 DNA-directed RNA 42.3 15 0.00033 27.4 1.3 32 74-109 2-36 (49)
134 PRK03692 putative UDP-N-acetyl 42.3 69 0.0015 32.0 6.5 68 264-334 102-169 (243)
135 PRK06463 fabG 3-ketoacyl-(acyl 42.1 1.9E+02 0.0042 27.9 9.8 67 221-290 9-76 (255)
136 PRK08277 D-mannonate oxidoredu 41.8 1.2E+02 0.0026 29.9 8.3 56 221-276 12-67 (278)
137 PRK07478 short chain dehydroge 41.7 1.2E+02 0.0025 29.5 8.1 69 221-290 8-80 (254)
138 PF00764 Arginosuc_synth: Argi 41.6 4.1E+02 0.0088 28.6 12.4 63 223-285 1-69 (388)
139 PRK06194 hypothetical protein; 40.1 1.5E+02 0.0032 29.3 8.7 70 221-290 8-80 (287)
140 PRK12743 oxidoreductase; Provi 40.1 1.3E+02 0.0027 29.4 8.1 70 221-290 4-77 (256)
141 PRK07097 gluconate 5-dehydroge 40.0 1.3E+02 0.0029 29.3 8.3 70 221-290 12-84 (265)
142 PF00070 Pyr_redox: Pyridine n 39.9 1.6E+02 0.0034 23.4 7.2 30 225-254 4-33 (80)
143 PF08660 Alg14: Oligosaccharid 39.7 2.4E+02 0.0053 26.4 9.5 39 322-364 92-130 (170)
144 PRK05993 short chain dehydroge 39.2 1.9E+02 0.0042 28.6 9.3 65 221-289 6-71 (277)
145 cd06389 PBP1_iGluR_AMPA_GluR2 39.0 4.8E+02 0.01 27.3 14.3 145 193-352 39-202 (370)
146 PRK07454 short chain dehydroge 38.8 1.3E+02 0.0029 28.7 8.0 30 221-250 8-37 (241)
147 PRK06483 dihydromonapterin red 38.8 2.1E+02 0.0046 27.2 9.4 64 221-287 4-68 (236)
148 PRK12823 benD 1,6-dihydroxycyc 38.8 1.7E+02 0.0038 28.3 8.8 69 221-290 10-81 (260)
149 cd00730 rubredoxin Rubredoxin; 38.2 20 0.00042 26.9 1.4 11 85-95 4-14 (50)
150 PF08659 KR: KR domain; Inter 38.1 2.2E+02 0.0047 26.5 9.0 71 221-291 2-79 (181)
151 TIGR01206 lysW lysine biosynth 38.1 28 0.00061 26.5 2.3 26 84-109 4-34 (54)
152 KOG1201 Hydroxysteroid 17-beta 37.9 2.4E+02 0.0052 29.2 9.6 73 220-292 39-113 (300)
153 PRK07201 short chain dehydroge 37.8 5.2E+02 0.011 29.0 13.6 70 221-291 373-446 (657)
154 COG0513 SrmB Superfamily II DN 37.8 6E+02 0.013 28.1 17.3 249 192-470 72-332 (513)
155 PRK08993 2-deoxy-D-gluconate 3 37.5 2.3E+02 0.0051 27.4 9.5 54 221-276 12-65 (253)
156 COG2260 Predicted Zn-ribbon RN 37.1 19 0.00041 27.8 1.2 31 84-122 7-38 (59)
157 PRK07814 short chain dehydroge 36.9 3E+02 0.0065 26.8 10.3 30 221-250 12-41 (263)
158 PF07279 DUF1442: Protein of u 36.8 2E+02 0.0043 28.3 8.5 51 217-268 39-94 (218)
159 PF13460 NAD_binding_10: NADH( 36.6 93 0.002 28.4 6.2 49 223-279 2-50 (183)
160 PRK06079 enoyl-(acyl carrier p 36.5 1.4E+02 0.0031 29.1 7.8 30 221-250 9-40 (252)
161 PRK08813 threonine dehydratase 36.4 3.9E+02 0.0085 28.1 11.4 35 325-369 84-118 (349)
162 TIGR00670 asp_carb_tr aspartat 36.3 1.4E+02 0.003 30.8 7.9 46 229-274 162-208 (301)
163 PRK07035 short chain dehydroge 36.2 1.8E+02 0.0038 28.1 8.4 30 221-250 10-39 (252)
164 PRK08643 acetoin reductase; Va 36.2 1.7E+02 0.0038 28.2 8.3 68 221-289 4-75 (256)
165 PF00106 adh_short: short chai 36.0 1.6E+02 0.0034 26.2 7.5 69 221-290 2-77 (167)
166 PRK08340 glucose-1-dehydrogena 35.5 1.6E+02 0.0034 28.7 7.9 29 222-250 3-31 (259)
167 PRK08862 short chain dehydroge 35.2 1.7E+02 0.0037 28.3 8.0 29 221-249 7-35 (227)
168 PRK05867 short chain dehydroge 35.2 1.7E+02 0.0038 28.2 8.2 30 221-250 11-40 (253)
169 PLN03209 translocon at the inn 34.9 3.5E+02 0.0076 30.7 11.2 32 220-251 81-112 (576)
170 PRK06172 short chain dehydroge 34.5 1.7E+02 0.0037 28.2 8.0 57 220-276 8-64 (253)
171 COG1439 Predicted nucleic acid 34.4 22 0.00049 33.7 1.5 30 74-109 135-165 (177)
172 PRK06128 oxidoreductase; Provi 33.8 1.9E+02 0.0041 29.1 8.4 70 221-290 57-131 (300)
173 PRK08628 short chain dehydroge 33.7 2.7E+02 0.0058 26.9 9.3 69 221-290 9-80 (258)
174 PRK12311 rpsB 30S ribosomal pr 33.6 5.3E+02 0.011 27.0 11.6 33 265-298 57-89 (326)
175 COG3364 Zn-ribbon containing p 33.4 14 0.0003 31.7 -0.0 24 84-107 4-30 (112)
176 PF12677 DUF3797: Domain of un 33.3 16 0.00035 27.1 0.3 16 72-90 6-21 (49)
177 COG2216 KdpB High-affinity K+ 33.2 84 0.0018 34.9 5.7 100 163-284 424-526 (681)
178 TIGR02415 23BDH acetoin reduct 33.0 2E+02 0.0043 27.7 8.1 69 221-290 2-74 (254)
179 PRK08589 short chain dehydroge 32.8 2.2E+02 0.0048 28.0 8.6 69 221-290 8-79 (272)
180 PRK08642 fabG 3-ketoacyl-(acyl 32.7 2.1E+02 0.0046 27.4 8.3 31 221-251 7-37 (253)
181 PRK08017 oxidoreductase; Provi 32.7 2.5E+02 0.0054 27.0 8.8 63 221-287 4-67 (256)
182 PRK06139 short chain dehydroge 32.3 1.7E+02 0.0037 30.3 7.9 69 221-290 9-81 (330)
183 PRK05866 short chain dehydroge 32.2 1.8E+02 0.0039 29.3 7.9 31 221-251 42-72 (293)
184 TIGR01012 Sa_S2_E_A ribosomal 32.1 2E+02 0.0043 27.8 7.6 83 267-368 61-144 (196)
185 PF03853 YjeF_N: YjeF-related 32.1 4E+02 0.0087 24.7 9.6 30 221-250 27-59 (169)
186 PF07754 DUF1610: Domain of un 32.1 40 0.00087 21.3 1.9 20 85-104 1-23 (24)
187 PF02887 PK_C: Pyruvate kinase 32.0 3.3E+02 0.0071 23.4 8.5 66 222-292 20-88 (117)
188 PRK05693 short chain dehydroge 32.0 2.5E+02 0.0053 27.6 8.8 66 221-290 3-69 (274)
189 PRK08217 fabG 3-ketoacyl-(acyl 31.9 2.1E+02 0.0045 27.3 8.1 30 221-250 7-36 (253)
190 TIGR01832 kduD 2-deoxy-D-gluco 31.8 2.9E+02 0.0063 26.4 9.1 54 221-276 7-60 (248)
191 PRK05876 short chain dehydroge 31.7 2.2E+02 0.0047 28.3 8.3 68 221-290 8-80 (275)
192 PRK08278 short chain dehydroge 31.7 3.1E+02 0.0068 27.0 9.5 31 221-251 8-38 (273)
193 PF08323 Glyco_transf_5: Starc 31.5 1.1E+02 0.0024 30.2 6.1 89 229-329 19-140 (245)
194 PTZ00409 Sir2 (Silent Informat 31.5 21 0.00045 36.3 0.9 32 222-253 203-236 (271)
195 COG4566 TtrR Response regulato 31.0 85 0.0018 30.3 4.8 34 415-448 7-43 (202)
196 PF01210 NAD_Gly3P_dh_N: NAD-d 30.8 64 0.0014 29.5 4.0 29 225-253 4-32 (157)
197 PRK08085 gluconate 5-dehydroge 30.7 2.6E+02 0.0056 27.0 8.5 30 221-250 11-40 (254)
198 PRK06720 hypothetical protein; 30.7 2.8E+02 0.0062 25.7 8.4 31 221-251 18-48 (169)
199 PRK07904 short chain dehydroge 30.6 3.2E+02 0.007 26.6 9.3 32 219-250 8-40 (253)
200 PRK07666 fabG 3-ketoacyl-(acyl 30.5 2.6E+02 0.0056 26.7 8.4 30 221-250 9-38 (239)
201 PRK07791 short chain dehydroge 30.5 2.7E+02 0.0059 27.7 8.9 71 221-291 8-90 (286)
202 PRK07067 sorbitol dehydrogenas 30.2 2.5E+02 0.0054 27.1 8.4 31 221-251 8-38 (257)
203 COG1985 RibD Pyrimidine reduct 30.0 1.7E+02 0.0037 28.7 6.9 51 221-274 75-125 (218)
204 PF10571 UPF0547: Uncharacteri 29.9 31 0.00067 22.2 1.1 20 84-105 2-22 (26)
205 PRK06924 short chain dehydroge 29.8 2.3E+02 0.0051 27.1 8.0 30 221-250 3-32 (251)
206 PRK06181 short chain dehydroge 29.7 2.3E+02 0.0049 27.5 8.0 70 221-290 3-75 (263)
207 PRK07326 short chain dehydroge 29.4 2.3E+02 0.0051 26.8 7.9 30 221-250 8-37 (237)
208 PTZ00354 alcohol dehydrogenase 29.2 5.1E+02 0.011 25.7 10.7 48 220-271 142-189 (334)
209 TIGR01763 MalateDH_bact malate 29.2 5.9E+02 0.013 26.1 11.2 119 227-362 8-143 (305)
210 PF10087 DUF2325: Uncharacteri 29.1 2.1E+02 0.0046 23.8 6.6 53 313-373 41-93 (97)
211 COG1419 FlhF Flagellar GTP-bin 29.1 7E+02 0.015 27.0 11.7 137 192-340 209-361 (407)
212 COG1675 TFA1 Transcription ini 29.0 15 0.00033 34.8 -0.6 31 74-108 109-143 (176)
213 PRK08226 short chain dehydroge 28.9 2.8E+02 0.0061 26.8 8.5 68 221-289 8-78 (263)
214 COG0279 GmhA Phosphoheptose is 28.7 3.8E+02 0.0083 25.4 8.5 96 263-365 37-146 (176)
215 PRK06113 7-alpha-hydroxysteroi 28.6 2.8E+02 0.006 26.8 8.4 69 220-289 12-84 (255)
216 PRK12938 acetyacetyl-CoA reduc 28.6 2.6E+02 0.0056 26.7 8.1 69 221-289 5-77 (246)
217 cd03145 GAT1_cyanophycinase Ty 28.4 5.4E+02 0.012 24.8 10.3 42 309-351 16-58 (217)
218 PRK04169 geranylgeranylglycery 28.1 2.7E+02 0.0058 27.7 8.0 29 249-277 14-42 (232)
219 PRK05650 short chain dehydroge 28.0 2.5E+02 0.0054 27.5 8.0 68 222-289 3-73 (270)
220 COG0800 Eda 2-keto-3-deoxy-6-p 27.7 5.9E+02 0.013 25.0 11.0 82 213-302 34-117 (211)
221 COG0375 HybF Zn finger protein 27.7 33 0.00072 30.3 1.3 45 63-107 50-96 (115)
222 PRK07792 fabG 3-ketoacyl-(acyl 27.6 3.8E+02 0.0083 27.0 9.4 68 220-287 13-84 (306)
223 PRK06935 2-deoxy-D-gluconate 3 27.6 3.3E+02 0.0073 26.3 8.8 69 220-290 16-88 (258)
224 PRK05653 fabG 3-ketoacyl-(acyl 27.5 1.8E+02 0.004 27.5 6.8 56 221-277 7-63 (246)
225 PRK10538 malonic semialdehyde 27.5 2.8E+02 0.0061 26.7 8.2 64 222-289 3-70 (248)
226 PRK06200 2,3-dihydroxy-2,3-dih 27.3 2.9E+02 0.0063 26.8 8.3 66 221-290 8-77 (263)
227 PRK08265 short chain dehydroge 27.2 3.2E+02 0.007 26.6 8.6 66 221-290 8-77 (261)
228 PRK06849 hypothetical protein; 27.1 7.5E+02 0.016 25.9 12.4 30 299-328 108-137 (389)
229 PF09837 DUF2064: Uncharacteri 27.1 3.6E+02 0.0079 23.7 8.0 94 235-334 2-99 (122)
230 PRK06114 short chain dehydroge 27.1 4E+02 0.0086 25.7 9.2 55 221-275 10-65 (254)
231 COG0836 {ManC} Mannose-1-phosp 27.0 3.1E+02 0.0068 28.7 8.4 63 413-478 51-124 (333)
232 PRK06949 short chain dehydroge 26.9 2.6E+02 0.0055 26.9 7.7 32 220-251 10-41 (258)
233 PRK12935 acetoacetyl-CoA reduc 26.8 3.7E+02 0.0081 25.6 8.9 69 221-289 8-80 (247)
234 PRK07832 short chain dehydroge 26.8 2.2E+02 0.0048 27.9 7.4 29 222-250 3-31 (272)
235 cd01078 NAD_bind_H4MPT_DH NADP 26.6 5.3E+02 0.012 24.0 10.3 30 220-249 29-58 (194)
236 PRK00762 hypA hydrogenase nick 26.5 38 0.00082 30.2 1.5 35 71-106 58-101 (124)
237 PF13433 Peripla_BP_5: Peripla 26.3 1.5E+02 0.0033 31.4 6.2 81 263-351 129-214 (363)
238 PRK12826 3-ketoacyl-(acyl-carr 26.3 3E+02 0.0065 26.2 8.1 69 221-289 8-79 (251)
239 PRK06124 gluconate 5-dehydroge 26.2 3E+02 0.0065 26.5 8.1 71 220-290 12-85 (256)
240 PRK12744 short chain dehydroge 26.1 4.2E+02 0.009 25.6 9.1 69 221-289 10-85 (257)
241 PRK12937 short chain dehydroge 26.1 3.7E+02 0.008 25.5 8.7 55 221-276 7-63 (245)
242 PF13453 zf-TFIIB: Transcripti 26.0 31 0.00068 24.3 0.8 25 84-108 1-30 (41)
243 PRK14138 NAD-dependent deacety 25.9 22 0.00049 35.4 -0.0 32 222-253 182-215 (244)
244 PF13561 adh_short_C2: Enoyl-( 25.8 1.5E+02 0.0032 28.6 5.8 26 227-252 4-29 (241)
245 PRK07231 fabG 3-ketoacyl-(acyl 25.6 3.2E+02 0.0069 26.0 8.1 30 221-250 7-36 (251)
246 PRK09291 short chain dehydroge 25.6 1.3E+02 0.0029 29.0 5.4 58 221-279 4-62 (257)
247 PRK05717 oxidoreductase; Valid 25.5 3.3E+02 0.0071 26.3 8.3 30 221-250 12-41 (255)
248 PRK12825 fabG 3-ketoacyl-(acyl 25.5 2.2E+02 0.0047 26.9 6.9 68 221-288 8-79 (249)
249 PRK09242 tropinone reductase; 25.4 3.3E+02 0.0071 26.3 8.2 68 221-289 11-84 (257)
250 PRK07206 hypothetical protein; 25.4 7.7E+02 0.017 26.0 11.7 61 263-325 66-126 (416)
251 PRK08213 gluconate 5-dehydroge 25.4 1.9E+02 0.0042 28.0 6.6 54 221-278 14-71 (259)
252 PRK05854 short chain dehydroge 25.4 3E+02 0.0066 27.9 8.3 70 221-291 16-91 (313)
253 TIGR03206 benzo_BadH 2-hydroxy 25.3 3.2E+02 0.007 26.0 8.1 68 221-289 5-76 (250)
254 PRK07806 short chain dehydroge 25.3 4.4E+02 0.0095 25.1 9.1 30 221-250 8-37 (248)
255 TIGR02069 cyanophycinase cyano 25.2 3.6E+02 0.0077 27.0 8.4 51 308-361 14-65 (250)
256 CHL00067 rps2 ribosomal protei 25.0 6.8E+02 0.015 24.7 11.2 32 265-297 66-97 (230)
257 KOG2593 Transcription initiati 24.9 41 0.00089 36.2 1.7 33 73-109 123-165 (436)
258 TIGR02825 B4_12hDH leukotriene 24.5 4E+02 0.0086 26.9 8.9 48 220-271 140-187 (325)
259 cd01411 SIR2H SIR2H: Uncharact 24.5 35 0.00077 33.5 1.1 26 84-109 120-148 (225)
260 cd08230 glucose_DH Glucose deh 24.4 2.2E+02 0.0047 29.4 7.0 49 221-271 175-223 (355)
261 PRK07677 short chain dehydroge 24.4 3.1E+02 0.0067 26.4 7.8 29 221-249 3-31 (252)
262 PRK12429 3-hydroxybutyrate deh 24.3 2.3E+02 0.0051 27.1 6.9 68 221-289 6-77 (258)
263 PRK08674 bifunctional phosphog 24.2 8E+02 0.017 25.3 12.7 30 222-251 82-113 (337)
264 PRK05875 short chain dehydroge 24.2 3.2E+02 0.007 26.7 8.0 30 221-250 9-38 (276)
265 PRK08261 fabG 3-ketoacyl-(acyl 24.1 4.5E+02 0.0097 28.1 9.7 69 220-290 211-281 (450)
266 COG1379 PHP family phosphoeste 24.0 22 0.00048 36.8 -0.4 29 77-106 242-274 (403)
267 PRK13656 trans-2-enoyl-CoA red 23.9 8.1E+02 0.018 26.4 11.1 53 192-250 15-73 (398)
268 cd01410 SIRT7 SIRT7: Eukaryoti 23.9 34 0.00073 33.2 0.8 32 222-253 159-192 (206)
269 PRK07062 short chain dehydroge 23.5 4.3E+02 0.0093 25.6 8.7 32 220-251 9-40 (265)
270 PRK05299 rpsB 30S ribosomal pr 23.4 7.7E+02 0.017 24.8 11.3 33 265-298 62-94 (258)
271 TIGR01011 rpsB_bact ribosomal 23.4 7.2E+02 0.016 24.4 11.6 33 265-298 60-92 (225)
272 PRK08303 short chain dehydroge 23.3 4.3E+02 0.0094 26.8 8.9 71 221-291 10-93 (305)
273 PF04122 CW_binding_2: Putativ 23.3 4.1E+02 0.009 21.6 7.4 55 220-276 25-82 (92)
274 PRK05872 short chain dehydroge 23.2 3.6E+02 0.0078 27.0 8.3 67 220-290 10-82 (296)
275 PRK07063 short chain dehydroge 23.2 3.9E+02 0.0085 25.8 8.3 30 221-250 9-38 (260)
276 PRK00481 NAD-dependent deacety 23.2 40 0.00088 33.4 1.2 26 84-109 124-154 (242)
277 cd08295 double_bond_reductase_ 23.1 5.1E+02 0.011 26.2 9.5 47 220-270 153-200 (338)
278 TIGR00768 rimK_fam alpha-L-glu 23.1 4.1E+02 0.0088 25.9 8.5 104 223-329 4-110 (277)
279 PRK07825 short chain dehydroge 23.1 4.6E+02 0.01 25.5 8.9 66 221-290 7-75 (273)
280 PRK06841 short chain dehydroge 23.0 4.3E+02 0.0092 25.3 8.5 31 221-251 17-47 (255)
281 PRK07178 pyruvate carboxylase 22.9 3.6E+02 0.0079 29.4 8.7 97 223-319 5-126 (472)
282 PRK06198 short chain dehydroge 22.7 4.4E+02 0.0095 25.3 8.5 70 221-290 8-81 (260)
283 PF00056 Ldh_1_N: lactate/mala 22.7 1.3E+02 0.0029 27.0 4.4 124 223-360 4-141 (141)
284 PRK12384 sorbitol-6-phosphate 22.7 4.1E+02 0.0088 25.6 8.3 30 221-250 4-33 (259)
285 PF08274 PhnA_Zn_Ribbon: PhnA 22.3 46 0.00099 22.2 0.9 23 82-104 2-26 (30)
286 TIGR01139 cysK cysteine syntha 22.3 8.1E+02 0.018 24.7 13.8 36 324-369 58-94 (298)
287 TIGR03325 BphB_TodD cis-2,3-di 22.3 3.9E+02 0.0084 26.0 8.1 65 221-289 7-75 (262)
288 PRK07985 oxidoreductase; Provi 22.3 5.5E+02 0.012 25.7 9.4 70 221-290 51-125 (294)
289 PRK06138 short chain dehydroge 22.2 4.3E+02 0.0092 25.2 8.3 67 221-290 7-78 (252)
290 cd01078 NAD_bind_H4MPT_DH NADP 22.0 3.1E+02 0.0067 25.7 7.1 43 245-287 30-72 (194)
291 TIGR01831 fabG_rel 3-oxoacyl-( 21.9 3.6E+02 0.0079 25.5 7.7 68 223-290 2-73 (239)
292 PRK08936 glucose-1-dehydrogena 21.9 5.3E+02 0.012 24.9 9.0 70 220-290 8-82 (261)
293 COG2242 CobL Precorrin-6B meth 21.9 2.3E+02 0.0051 27.2 6.0 64 268-344 59-122 (187)
294 COG4007 Predicted dehydrogenas 21.7 8.8E+02 0.019 24.9 11.6 187 232-452 33-220 (340)
295 PRK08594 enoyl-(acyl carrier p 21.7 6.2E+02 0.013 24.6 9.4 30 221-250 9-40 (257)
296 PRK07775 short chain dehydroge 21.6 4.4E+02 0.0095 25.9 8.4 68 221-289 12-83 (274)
297 COG4068 Uncharacterized protei 21.6 22 0.00047 27.5 -0.8 29 78-108 4-34 (64)
298 PRK13982 bifunctional SbtC-lik 21.6 2.3E+02 0.0049 31.3 6.6 48 221-275 274-321 (475)
299 PRK06947 glucose-1-dehydrogena 21.5 4E+02 0.0087 25.4 7.9 68 221-288 4-75 (248)
300 PRK00654 glgA glycogen synthas 21.5 8E+02 0.017 26.5 11.0 91 228-329 19-125 (466)
301 PRK06057 short chain dehydroge 21.5 5.8E+02 0.013 24.5 9.2 30 221-250 9-38 (255)
302 PF13719 zinc_ribbon_5: zinc-r 21.4 70 0.0015 22.1 1.8 24 84-107 4-35 (37)
303 COG1384 LysS Lysyl-tRNA synthe 21.4 54 0.0012 36.2 1.8 31 74-104 162-201 (521)
304 PTZ00066 pyruvate kinase; Prov 21.3 7.4E+02 0.016 27.7 10.5 9 28-36 39-47 (513)
305 PRK07476 eutB threonine dehydr 21.3 9E+02 0.019 24.8 11.5 35 325-369 70-104 (322)
306 cd01413 SIR2_Af2 SIR2_Af2: Arc 21.3 46 0.001 32.6 1.2 31 222-252 175-207 (222)
307 PRK06701 short chain dehydroge 21.3 5E+02 0.011 25.9 8.8 69 221-289 48-120 (290)
308 PRK11823 DNA repair protein Ra 21.2 57 0.0012 35.6 1.9 22 77-104 6-28 (446)
309 PRK07890 short chain dehydroge 21.1 2.5E+02 0.0053 27.1 6.4 30 221-250 7-36 (258)
310 PF00185 OTCace: Aspartate/orn 21.0 3.3E+02 0.0071 25.1 6.8 52 228-280 12-70 (158)
311 PF07503 zf-HYPF: HypF finger; 21.0 53 0.0012 22.7 1.1 14 81-94 20-33 (35)
312 PRK00779 ornithine carbamoyltr 21.0 6.8E+02 0.015 25.8 9.7 57 221-278 154-212 (304)
313 cd01981 Pchlide_reductase_B Pc 20.9 1E+03 0.022 25.4 11.6 82 233-319 182-263 (430)
314 PRK05599 hypothetical protein; 20.9 3.9E+02 0.0085 25.8 7.7 28 222-250 3-30 (246)
315 PF13240 zinc_ribbon_2: zinc-r 20.9 59 0.0013 20.2 1.2 21 84-106 1-22 (23)
316 PRK08416 7-alpha-hydroxysteroi 20.7 4.6E+02 0.01 25.4 8.3 32 221-252 10-41 (260)
317 smart00488 DEXDc2 DEAD-like he 20.6 2.6E+02 0.0056 28.5 6.5 62 304-365 10-71 (289)
318 smart00489 DEXDc3 DEAD-like he 20.6 2.6E+02 0.0056 28.5 6.5 62 304-365 10-71 (289)
319 PRK12827 short chain dehydroge 20.5 7.2E+02 0.016 23.4 9.8 30 221-250 8-37 (249)
320 PRK08690 enoyl-(acyl carrier p 20.4 5.1E+02 0.011 25.3 8.5 69 221-290 8-81 (261)
321 PRK07774 short chain dehydroge 20.4 4.8E+02 0.01 24.9 8.2 30 221-250 8-37 (250)
322 PLN02342 ornithine carbamoyltr 20.4 6.2E+02 0.014 26.7 9.4 49 229-278 204-254 (348)
323 PRK06354 pyruvate kinase; Prov 20.3 7.6E+02 0.017 28.1 10.6 23 228-252 387-409 (590)
324 TIGR02095 glgA glycogen/starch 20.3 6.2E+02 0.013 27.2 9.8 94 227-330 18-136 (473)
325 PRK06077 fabG 3-ketoacyl-(acyl 20.2 4.8E+02 0.01 24.8 8.2 56 221-276 8-64 (252)
326 COG3484 Predicted proteasome-t 20.1 1.7E+02 0.0038 28.4 4.6 40 445-486 28-67 (255)
No 1
>PLN02569 threonine synthase
Probab=100.00 E-value=6.8e-95 Score=777.75 Aligned_cols=473 Identities=86% Similarity=1.346 Sum_probs=432.1
Q ss_pred CCCcccccccccCCcchHHHHHhcCCCCCCccceeecCCCCCCCCCCccCCCCceeecCCCCcceeccccchhccCChHH
Q 009957 44 PPPAAASKNRRAADENIRDEARRQRSTTNNTFSAKYVPFNAGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAY 123 (521)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~cg~~~~~~~~~~~c~cGGll~~~~d~~~~~~~~~~~ 123 (521)
.||......++..++|||++|+|+.+.+.+.||.+|++++.|..||++|+.++..|+|+|||+|++.||++.++.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~C~~Cg~~y~~~~~~~~C~cgg~l~~~~d~~~~~~~~~~~ 90 (484)
T PLN02569 11 DPPPIKSATKFTADENIRDEARRGPPAPPDEFSAKYVPFLECPLTGEKYSLDEVVYRSKSGGLLDVRHDMEALKRYDGKY 90 (484)
T ss_pred CCCCcccccccCcchhhhhhhhhcCCCCCcccccccccccEeCCCCCcCCCccccccCCCCCeEEEecchhhhccccchh
Confidence 34444556678889999999999888888999999999999999999999999999999999999999998776555455
Q ss_pred HHHhhhhccCCCCCCCCCccccccccccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHH
Q 009957 124 WRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGM 203 (521)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga 203 (521)
|++.++.+.....||+.++||||++|+||..+.+.+++|+||+|||++++++++..+|+.+||+|+|++||||||||||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~g~wry~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga 170 (484)
T PLN02569 91 WRALFDSRVGKTTWPYGSGVWSKKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGM 170 (484)
T ss_pred hhhhHhcccccccCCCCCCccccccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHH
Confidence 66666666555668888899999998899877778899999999999999987642566689999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHH
Q 009957 204 TVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKL 283 (521)
Q Consensus 204 ~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~ 283 (521)
.++++.+.+.+..+.+...|+++||||||+|+|+||+++|++|+||+|++.++..|+.||+.|||+|+.|+|+||+|++.
T Consensus 171 ~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~~d~a~~~ 250 (484)
T PLN02569 171 TVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTDFDGCMRL 250 (484)
T ss_pred HHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH
Confidence 99999987765444334679999999999999999999999999999997678899999999999999999999999999
Q ss_pred HHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEecc
Q 009957 284 IREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQA 363 (521)
Q Consensus 284 ~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~ 363 (521)
+++++++.++|++|++||++++||+|+++||++|++|+.||+||+|+|+||+++|+++||++++++|+++++||||+||+
T Consensus 251 a~e~~~~~~~~~~n~~Np~~ieG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa 330 (484)
T PLN02569 251 IREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQA 330 (484)
T ss_pred HHHHHHHcCCEecCCCCcchhHhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEee
Confidence 99998888999999999999999999999999999987799999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHhhCCcceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHhcCCeeccchHH
Q 009957 364 ANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGV 443 (521)
Q Consensus 364 ~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l~~eGi~~ePssA~ 443 (521)
++|++++++|+.|...+.+....+|++++|+++.|.++.+.+.++++++|.++.|+|+|+++|+++++++|+++||+||+
T Consensus 331 ~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~a~~~Gi~vepssAa 410 (484)
T PLN02569 331 ANANPLYRAYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAEADKTGMFLCPHTGV 410 (484)
T ss_pred CCCcHHHHHHHcCCCccccCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHCCcEECchHHH
Confidence 99999999999997555666667899999999999999999999999999999999999999999977899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhhcchhHHhhhhhcCCCcccCCCHHHHHHHHHHHhc
Q 009957 444 ALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYLG 516 (521)
Q Consensus 444 alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (521)
++||++++.++|.+.++++||+++||+|+||++..+.||.++++.+.++++|+|..+++|++.|++.|+.+++
T Consensus 411 alAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (484)
T PLN02569 411 ALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQSKIDYHSKEIPDMACRFANPPVSVKADFGSVMDVLKKYLS 483 (484)
T ss_pred HHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhHHHHhcccccccchhhccCCccccCCCHHHHHHHHHHHhc
Confidence 9999999999998999999999999999999999999999999999999999999999999999999998875
No 2
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.8e-75 Score=621.84 Aligned_cols=408 Identities=27% Similarity=0.431 Sum_probs=353.7
Q ss_pred CCCccceeecCCCCCCCCCCccCCCCceeec-CCCCcceeccccchhccC-ChHHHHHhhhhccCCCCCCCCCccccccc
Q 009957 71 TNNTFSAKYVPFNAGPDSPEFYSLDEIVYRS-RSGGLLDVQHDMESLKKF-DGAYWRDLFDSRVGKTTWPYGSGVWSKKE 148 (521)
Q Consensus 71 ~~~~~~~~~v~~~~~~~cg~~~~~~~~~~~c-~cGGll~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iwr~~~ 148 (521)
.+++-.|.|+-...|..||++|+.+.. ++| .|||+|++.||++.++.. +.+.| ..+ ..++|||++
T Consensus 7 ~~~~~~~~~~~~l~C~~Cg~~~~~~~~-~~C~~cg~~l~~~y~~~~~~~~~~~~~~----~~~--------~~~~wry~~ 73 (421)
T PRK07591 7 TTTTTDLGPAVALKCRECGAEYPLGPI-HVCEECFGPLEVAYDYDAIRKRVSRESI----EAG--------PKSIWRYRD 73 (421)
T ss_pred CcccccccceeEEEeCCCCCcCCCCCC-ccCCCCCCeEEEEechhhhccccChhhh----hcc--------ccchhcchh
Confidence 344455566666789999999998866 999 599999999998766421 22111 111 248999999
Q ss_pred cccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCC
Q 009957 149 WVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCAST 228 (521)
Q Consensus 149 ~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSS 228 (521)
+||..+ ++.++|+||+|||++++++++. +|+.+||+|+|++|||||||||++.+++..+.+ .| .+.|+++||
T Consensus 74 -~lp~~~-~~~v~l~eG~TPLv~~~~l~~~-lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~---~g--~~~vv~aSs 145 (421)
T PRK07591 74 -LLPVPA-DNPVDLGPGFTPLVKADRLARE-LGLKNLYIKDDSVNPTHSFKDRVVSVALTAARE---LG--FTTVACAST 145 (421)
T ss_pred -hCcccc-CCCCcCCCCCCcceEhHHHHHH-hCCCcEEEEeCCCCCccChHHHHHHHHHHHHHH---cC--CCEEEEeCC
Confidence 488754 3479999999999999999887 787789999999999999999999999987643 34 457899999
Q ss_pred chHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcC-CccccCC-CChHhHhh
Q 009957 229 GDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSEL-PIYLANS-LNSLRLEG 306 (521)
Q Consensus 229 GN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~-~~~~~ns-~Np~~i~G 306 (521)
||||+|+|+||+++|++|+||+|++ ++..|+.+++.|||+|+.++++++++.+.+++++++. ++|+.|+ .||++++|
T Consensus 146 GN~g~alA~~aa~~Gl~~~I~vP~~-~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ieG 224 (421)
T PRK07591 146 GNLANSVAAHAARAGLDSCVFIPAD-LEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSELANEHEGWGFVNINLRPYYAEG 224 (421)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEEecCCCCcccccc
Confidence 9999999999999999999999997 7889999999999999999999999999999999887 8888886 48999999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCC-CCCeEEEeccCCCchhhHHHhhCCcceeeccc
Q 009957 307 QKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVD-RMPRLVCTQAANANPLYLYYKSGWKDFKAVKA 385 (521)
Q Consensus 307 ~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~-~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~ 385 (521)
|+|+++||++|++|..||+||+|+|+||+++|+++||++++++|+++ +.||||+||++++++++++|+.|.....+. .
T Consensus 225 ~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~-~ 303 (421)
T PRK07591 225 SKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPV-K 303 (421)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCC-C
Confidence 99999999999998679999999999999999999999999999986 778999999999999999999886433333 3
Q ss_pred ccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEE
Q 009957 386 STTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTV 464 (521)
Q Consensus 386 ~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV 464 (521)
.+|+++++.++.|.+....+.++++++|.++.|+|+|+++|+++| +++|+++||++|+++||++++.++|.+.++++||
T Consensus 304 ~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV 383 (421)
T PRK07591 304 PNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETV 383 (421)
T ss_pred CCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 579999999999988888999999999999999999999999998 6699999999999999999999999899999999
Q ss_pred EEeCCCCCCchHHHHhhhcchhHHhhhhhcCCCcccCCCHHHHHHHHHH
Q 009957 465 VVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKK 513 (521)
Q Consensus 465 ~v~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (521)
+++||+|+|+++.+. +..+.+..++++++++++.++.
T Consensus 384 ~i~tG~G~kd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 420 (421)
T PRK07591 384 VYITGNGLKTLEAVA------------GYVGPTATIKPSLDAFEAALLR 420 (421)
T ss_pred EEeCCCccCCHHHHH------------HhcCCCccCCCCHHHHHHHHhc
Confidence 999999999988763 2334556678999998887653
No 3
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=2.2e-75 Score=617.70 Aligned_cols=390 Identities=41% Similarity=0.673 Sum_probs=346.6
Q ss_pred CCCCCCCccCCCCceeec-CCCCcceeccccchhccCChHHHHHhhhhccCCCCCCCCCccccccccccCCCCcchhhcc
Q 009957 84 AGPDSPEFYSLDEIVYRS-RSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSA 162 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~~c-~cGGll~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl 162 (521)
.|..||++|+.++..++| .|||+|++.||++.+.. +.+ ..+||||++| ||.. +.+++|
T Consensus 5 ~C~~cg~~~~~~~~~~~Cp~cg~~l~~~y~~~~~~~----------~~~--------~~~~wry~~~-lp~~--~~~v~l 63 (397)
T PRK06260 5 KCIECGKEYDPDEIIYTCPECGGLLEVIYDLDKIFD----------KLR--------GRGVWRYKEL-LPVK--KKIVSL 63 (397)
T ss_pred EECCCCCCCCCCCccccCCCCCCeEEEEecchhhhh----------ccC--------Ccceeeehhh-cCCC--CCcccC
Confidence 499999999998888999 59999999998653311 111 2489999994 8874 348999
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
++|+|||+++++++.. +|..+||+|+|++|||||||||++.++++.+.+ .| ..+|+++||||+|+|+|+||+++
T Consensus 64 ~~G~TPLv~~~~l~~~-~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~---~g--~~~vv~aSsGN~g~alA~~aa~~ 137 (397)
T PRK06260 64 NEGGTPLYRCPNLEKE-LGVKELYVKHEGANPTGSFKDRGMTVGVTKALE---LG--VKTVACASTGNTSASLAAYAARA 137 (397)
T ss_pred CCCCCCeEEchhhHHH-hCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHH---cC--CCEEEEeCCcHHHHHHHHHHHHc
Confidence 9999999999999876 777789999999999999999999999887643 34 35799999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCCCC
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
|++|+||+|++.++..|+.|++.+||+|+.++++++++.+.+++++++.++|.+|++||++++||+|+++||++|++|..
T Consensus 138 G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~g~y~~~~~np~~~~G~~t~a~Ei~eQl~~~~ 217 (397)
T PRK06260 138 GLKCYVLLPAGKVALGKLAQALLHGAKVLEVDGNFDDALDMVVELAKEGKIYLLNSINPFRLEGQKTIGFEIADQLGWEV 217 (397)
T ss_pred CCcEEEEEeCCCccHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhCCEEeecCCCchhhcchhhHHHHHHHHhCCCC
Confidence 99999999997568899999999999999999999999999999999889999999999999999999999999999867
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|+++||+++.++|++++.||||+||++++++++++++.|.....+.....|+++++.++.|.+..
T Consensus 218 pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p~~~~ 297 (397)
T PRK06260 218 PDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNPVNAP 297 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999865445555678999999999999999
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhh
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDY 481 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~ 481 (521)
+.++++++++|.++.|+|+|+++++++| +++|+++||++|+++||++++.++|.+.++++||+++||+|+|+++.+.
T Consensus 298 ~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~~-- 375 (397)
T PRK06260 298 KALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDAAI-- 375 (397)
T ss_pred HHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHHHH--
Confidence 8999999999999999999999999998 6799999999999999999999999888999999999999999998873
Q ss_pred hcchhHHhhhhhcCCCcccCCCHHHHHHHHH
Q 009957 482 HSKEIKDMACRFANPPVQVKADFGAVMDVLK 512 (521)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (521)
...+.+..++++++++.+.++
T Consensus 376 ----------~~~~~~~~~~~~~~~~~~~~~ 396 (397)
T PRK06260 376 ----------KACEEPIPVEPDMEALLKVLR 396 (397)
T ss_pred ----------hhcCCCccCCCCHHHHHHHhh
Confidence 122344556888888766554
No 4
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-76 Score=614.02 Aligned_cols=404 Identities=36% Similarity=0.552 Sum_probs=345.1
Q ss_pred eeecCCCCCCCCCCccCCCCceeecC-CCCcceeccccchhccCChHHHHHhhhhccCCCCCCCCCccccccccccCCCC
Q 009957 77 AKYVPFNAGPDSPEFYSLDEIVYRSR-SGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEID 155 (521)
Q Consensus 77 ~~~v~~~~~~~cg~~~~~~~~~~~c~-cGGll~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~ 155 (521)
|+|+ .+.|..|+.+|+-....++|+ ||+.+.+.|++..+..+ ..+. ..+|..++|||.++ ||.-
T Consensus 1 m~~~-~~rc~~cg~~f~~a~~~~~c~~cGl~lp~~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~~-lp~~- 65 (411)
T COG0498 1 MKYV-SLRCLKCGREFSQALLQGLCPDCGLFLPAEYPYFSLEEI-----DKLL-------GLSYPELAWRYLEL-LPVG- 65 (411)
T ss_pred Ccee-EeecCCCCcchhhHHhhCcCCcCCcccccccCccchhhh-----hhhh-------cccccchHHHHHHH-CCCC-
Confidence 4555 457889998887556667895 77777766654332111 1111 12456689999994 8853
Q ss_pred cchhhcccccCCccccccccccccCCCC--cEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHH
Q 009957 156 PDDIVSAFEGNSNLFWAERFGKQFLGMN--DLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSA 233 (521)
Q Consensus 156 ~~~~vsl~eG~TPL~~~~~l~~~~lg~~--~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~ 233 (521)
+...++|.+|.||+++++++... +|+. ++|+|+|++|||||||||+++++++.+.++ |. .+|++|||||||+
T Consensus 66 ~~~~~~l~eg~tp~~~~~~~~~~-l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~---g~--~~I~~ASSGnTgA 139 (411)
T COG0498 66 EIPAVSLGEGGTPLYKAPALAAP-LGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKEL---GA--KTILCASSGNTGA 139 (411)
T ss_pred CcchhhhhhccCccccCcccchh-hccCCcceehhhhccCCCcchhhhhHHHHHHHHHHh---cC--CEEEEeCCchHHH
Confidence 34568999999999999888776 7763 599999999999999999999999998765 22 5799999999999
Q ss_pred HHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-ccccCCCChHhHhhHHHHHH
Q 009957 234 ALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELP-IYLANSLNSLRLEGQKTAAV 312 (521)
Q Consensus 234 AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~-~~~~ns~Np~~i~G~~T~a~ 312 (521)
|+|+|++++|++|+|++|+++++..|+.||..+|++++.|+|+||||++.+++++++.+ ++.+|++||+|++||+|++|
T Consensus 140 s~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~fDda~~~vk~~~~~~~~~~~~nsiNp~rlegq~t~~f 219 (411)
T COG0498 140 SAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDAQELVKEAANREGLLSAVNSINPYRLEGQKTYAF 219 (411)
T ss_pred HHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHhhCCceeeccccCHHHhhhhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999877 78889999999999999999
Q ss_pred HHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhh
Q 009957 313 EILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASA 392 (521)
Q Consensus 313 EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~ 392 (521)
||++|++|+.||+|+||+||||+++|+|+||+++...|.++..|++.+||++++.|+...++.+. ..+.|++++
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~------~~~~T~a~a 293 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGR------ETPETIAPA 293 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccccc------ccccccccc
Confidence 99999999999999999999999999999999999999989999999999999999999988773 456899999
Q ss_pred hccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCC
Q 009957 393 IQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHG 471 (521)
Q Consensus 393 i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g 471 (521)
|+|++|+|+++++++++++.|..+.|||+|++++++++ +++|+++|||||++++++++++++ .+++++++|+++||||
T Consensus 294 m~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~-~i~~~~~vV~v~Tg~~ 372 (411)
T COG0498 294 MDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREK-IIDPDETVVLVLTGHG 372 (411)
T ss_pred cccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHh-hcCCCCeEEEEecCCc
Confidence 99999999999999999999999999999999999998 679999999999999999999998 8889999999999999
Q ss_pred CCchHHHHhhhcchhHHhhhhhcCCCcccC-CCHHHHHHHHHH
Q 009957 472 LKFTQSKIDYHSKEIKDMACRFANPPVQVK-ADFGAVMDVLKK 513 (521)
Q Consensus 472 ~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 513 (521)
+||++++.+. +....... ..+..++ +|+++++..+.+
T Consensus 373 ~K~~~~v~~~-~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 410 (411)
T COG0498 373 LKFPDTVEEA-PAELAEIP----ELPLRVEDADLEALKKYILQ 410 (411)
T ss_pred ccChhHHHhc-cccccccc----cccccCCcccHHHHHHHHhc
Confidence 9999998654 11111110 1111233 489988887754
No 5
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.7e-74 Score=608.84 Aligned_cols=379 Identities=28% Similarity=0.460 Sum_probs=336.9
Q ss_pred CCCCCCCccCCCCceeecCCCCcceeccccchhcc-CChHHHHHhhhhccCCCCCCCCCccccccccccCCCCcchhhcc
Q 009957 84 AGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKK-FDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSA 162 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~~c~cGGll~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl 162 (521)
.|..||++|+.++..++|+|||+|++.||++.++. ++.+. +.. ...++|||++| ||....+.+++|
T Consensus 9 ~C~~Cg~~~~~~~~~~~C~cg~~l~~~~d~~~~~~~~~~~~----~~~--------~~~~~~ry~~~-lp~~~~~~~vsl 75 (394)
T PRK08197 9 ECSKCGETYDADQVHNLCKCGKPLLVRYDLEAVKQAVTREA----LAG--------RPANLWRYHEL-LPVRDPEHIVSL 75 (394)
T ss_pred EECCCCCCCCCCCcceecCCCCeeEEEechhhhhhccchhh----hcc--------CCcchhcchhh-CCCCCCCCCCcc
Confidence 69999999999988899999999999999875432 11111 111 12489999995 897666678999
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
+||+|||++++++++. +|+.+||+|+|++|||||||||++.++++.+. +.| ..+|+++||||+|+|+|+||+++
T Consensus 76 geG~TPL~~~~~l~~~-~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~---~~g--~~~vv~aSsGN~g~alA~~aa~~ 149 (394)
T PRK08197 76 GEGMTPLLPLPRLGKA-LGIGRLWVKDEGLNPTGSFKARGLAVGVSRAK---ELG--VKHLAMPTNGNAGAAWAAYAARA 149 (394)
T ss_pred CcCCCCceEhHHHHHH-hCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHH---HcC--CCEEEEeCCcHHHHHHHHHHHHc
Confidence 9999999999999877 77678999999999999999999999998764 344 46799999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCC
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWE 321 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 321 (521)
|++|+||+|++ +++.|+.+++.+||+|+.++++++++.+.+++++++.++|+.|++ ||++++|++|+++||++|++|.
T Consensus 150 G~~~~v~vp~~-~~~~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~~~~~~np~~ieG~~t~a~Ei~eQl~~~ 228 (394)
T PRK08197 150 GIRATIFMPAD-APEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGWFDVSTLKEPYRIEGKKTMGLELAEQLGWR 228 (394)
T ss_pred CCcEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcccccCCCCccchhcHHHHHHHHHHHcCCC
Confidence 99999999997 788999999999999999999999999999999888899999984 9999999999999999999987
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCC-CCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCcc
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVD-RMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVS 400 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~-~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~ 400 (521)
.||+||+|+|+||+++|+++||++++++|+++ +.||||+||++++++++++|+.|.....+....+|+++++.++.|..
T Consensus 229 ~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~ 308 (394)
T PRK08197 229 LPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALG 308 (394)
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCC
Confidence 79999999999999999999999999999985 89999999999999999999988644444445679999999988887
Q ss_pred HHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHH
Q 009957 401 IDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKI 479 (521)
Q Consensus 401 ~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~ 479 (521)
....++.+++++|.++.|+|+|+++++++| +++|+++||++|+++||++++.+++.+.++++||+++||+|+||++++.
T Consensus 309 ~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~~~ 388 (394)
T PRK08197 309 DFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDTVP 388 (394)
T ss_pred HHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhhhh
Confidence 777889999999999999999999999998 6699999999999999999999998888899999999999999999875
Q ss_pred hhh
Q 009957 480 DYH 482 (521)
Q Consensus 480 ~~~ 482 (521)
++.
T Consensus 389 ~~~ 391 (394)
T PRK08197 389 VVV 391 (394)
T ss_pred hhc
Confidence 443
No 6
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=2.7e-69 Score=561.62 Aligned_cols=343 Identities=27% Similarity=0.338 Sum_probs=304.3
Q ss_pred CCCCCCCccCCCCceeecCCCCcceeccccchhccCChHHHHHhhhhccCCCCCCCCCccccccccccCCCCcchhhccc
Q 009957 84 AGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAF 163 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~~c~cGGll~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl~ 163 (521)
.|.+||++|+.+ ..++|+|||+|++.||++.++. .++ ..+||||++| ||..+ +..++|+
T Consensus 3 ~C~~Cg~~~~~~-~~~~C~c~~~l~~~~~~~~~~~-----~~~-------------~~~~wry~~~-lP~~~-~~~~sl~ 61 (347)
T PRK08329 3 RCTKCGRTYEEK-FKLRCDCGGTLLVEREYGSFDS-----PRE-------------YLDMRRYIDY-LPVDE-EFLPHLT 61 (347)
T ss_pred CcCCCCCCcCCC-CceecCCCCcEEEEeccccccc-----ccc-------------ccchhhhHHh-CCCCC-CCCCcCC
Confidence 599999999865 4489999999999998764321 010 1389999995 89754 4568999
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
||.|||+++. . +||+|+|++|||||||||++.+++..+.+ .| ...|+++||||||+|+|+||+++|
T Consensus 62 eg~Tpl~~~~--------~-~l~~K~E~~nPtGSfKdRga~~~i~~a~~---~g--~~~vv~aSsGN~g~alA~~aa~~G 127 (347)
T PRK08329 62 PPITPTVKRS--------I-KVYFKLDYLQPTGSFKDRGTYVTVAKLKE---EG--INEVVIDSSGNAALSLALYSLSEG 127 (347)
T ss_pred CCCCccccCC--------C-eEEEEeCCCCCCcCCHHHHHHHHHHHHHH---cC--CCEEEEECCCcHHHHHHHHHHHcC
Confidence 9999999752 2 79999999999999999999999988753 34 467999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCC-CChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANS-LNSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||+|++ ++..|+.+++.+||+|+.++++++++.+.+++++++.+++++++ .||++++|++|+++||++|++ .
T Consensus 128 ~~~~v~vp~~-~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eql~--~ 204 (347)
T PRK08329 128 IKVHVFVSYN-ASKEKISLLSRLGAELHFVEGDRMEVHEEAVKFSKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIG--V 204 (347)
T ss_pred CcEEEEECCC-ChHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeeccCCCCchhhccchhHHHHHHHHcC--C
Confidence 9999999997 78999999999999999999999999888888888877655554 699999999999999999998 7
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|+++||+++.++|++++.||||+||++++++++..+ ...+|+++++.++.|....
T Consensus 205 pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~----------~~~~t~a~gi~i~~~~~~~ 274 (347)
T PRK08329 205 PDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRS----------KSENKLADGIAIPEPPRKE 274 (347)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhcc----------CCCCceeeeEEeCCCCCHH
Confidence 999999999999999999999999999999899999999999998887532 1346899999999998887
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHHHhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCc
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKF 474 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~ 474 (521)
..+.++++++|.++.|+|+|+++|+++|.++|+++||+||+++||++++.++|.|.++++||+++||||+|+
T Consensus 275 ~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~ 346 (347)
T PRK08329 275 EMLRALEESNGFCISVGEEETRAALHWLRRMGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKN 346 (347)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccC
Confidence 888999999999999999999999999866999999999999999999999999999999999999999996
No 7
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=6.2e-69 Score=575.66 Aligned_cols=356 Identities=31% Similarity=0.462 Sum_probs=317.3
Q ss_pred CCCCCCCccCCCCceeecCCCCcceeccccchhccCChHHHHHhhhhccCCCCCCCCCccccccccccCCCCcchhhccc
Q 009957 84 AGPDSPEFYSLDEIVYRSRSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAF 163 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~~c~cGGll~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl~ 163 (521)
.|..||++|+.+ ..++|.|||+|++.||++.++. +.|+ .+ .++||||++| ||.. +.+++|+
T Consensus 3 ~C~~Cg~~~~~~-~~~~C~c~~~l~~~y~~~~~~~---~~~~----~~--------~~~~wry~~~-lp~~--~~~v~l~ 63 (442)
T PRK05638 3 KCPKCGREYNSY-IPPFCICGELLEIIYDYSSVDV---RKWK----NR--------DPGVWRYKEL-LPQV--KKIISLG 63 (442)
T ss_pred EeCCCCCCCCCC-CceecCCCCcEEEEecccccch---hhhc----cC--------CCChhhhhhh-CCCc--CCccccC
Confidence 499999999854 4589999999999998764421 1121 11 2489999995 8874 3678999
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
+|+|||++++ +... +|. +||+|+|++|||||||||++.++++.+.+ .| ..+|+++||||||+|+|+||+++|
T Consensus 64 ~G~TPLv~~~-~~~~-~g~-~l~~K~E~~nPtGSfKdR~a~~~i~~a~~---~g--~~~vv~aSsGN~g~alA~~aa~~G 135 (442)
T PRK05638 64 EGGTPLIRAR-ISEK-LGE-NVYIKDETRNPTGSFRDRLATVAVSYGLP---YA--ANGFIVASDGNAAASVAAYSARAG 135 (442)
T ss_pred CCCCcEEccc-chHH-hCC-eEEEEeCCCCCCCChHHHHHHHHHHHHHH---cC--CCEEEEeCCChHHHHHHHHHHHcC
Confidence 9999999984 6555 675 89999999999999999999999997643 34 457999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||||++ ++..|+.+++.+||+|+.++++++++.+.+++++++.++|+.|++ ||++++|++|+++||++|++
T Consensus 136 ~~~~i~vp~~-~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~~~~~~~~~~np~~~eG~~t~a~Ei~eq~~--- 211 (442)
T PRK05638 136 KEAFVVVPRK-VDKGKLIQMIAFGAKIIRYGESVDEAIEYAEELARLNGLYNVTPEYNIIGLEGQKTIAFELWEEIN--- 211 (442)
T ss_pred CCEEEEEeCC-CCHHHHHHHHhcCcEEEEECCCHHHHHHHHHHHHHhCCeEecCCCCChhHhhhHHHHHHHHHHHHC---
Confidence 9999999997 799999999999999999999999999999999888899999985 99999999999999999996
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|+++||+++...|++++.||||+||+++|+|+.+++..+.. ....|++.++.++.|....
T Consensus 212 pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~-----~~~~t~a~gl~~~~p~~~~ 286 (442)
T PRK05638 212 PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKT-----KCNETKALGLYVKNPVMKE 286 (442)
T ss_pred cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCC-----CCCCceeeeEeeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999987632 2356888999999999888
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHHHhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
..+.++++++|.++.|+|+++.++++++.++|+++||+||+++||++++.++|.+.++++||+++||+|+|++
T Consensus 287 ~~~~~i~~~~g~~~~v~d~~i~~a~~~l~~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 287 YVSEAIKESGGTAVVVNEEEIMAGEKLLAKEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 8889999999999999999999999988779999999999999999999999988899999999999999996
No 8
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=8.5e-69 Score=554.94 Aligned_cols=331 Identities=25% Similarity=0.391 Sum_probs=290.0
Q ss_pred CCCCCCCccCCCCceeec-CCCCcceeccccchhccCChHHHHHhhhhccCCCCCCCCCccccccccccCCCCcchhhcc
Q 009957 84 AGPDSPEFYSLDEIVYRS-RSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSA 162 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~~c-~cGGll~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl 162 (521)
.|.+||++|+. ...++| .|||+|++.||++.. .++| ++ +||... .+++|
T Consensus 5 ~C~~Cg~~~~~-~~~~~C~~cg~~l~~~~d~~~~------------------------~~~~--~~-~lp~~~--~~vsl 54 (338)
T PRK06450 5 VCMKCGKERES-IYEIRCKKCGGPFEILIDFEFD------------------------KNLE--RK-NFPYIK--HFISL 54 (338)
T ss_pred EECCcCCcCCC-cccccCCcCCCEeEEeeccccc------------------------chhh--Hh-hCCCCc--CCCCC
Confidence 49999999986 556889 599999999876421 1355 34 477642 47999
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
+||+|||++. .+||+|+|++|||||||||++.++++++.+ .| .+.|+++||||+|+|+|+||+++
T Consensus 55 geG~TPLv~~----------~~l~~K~E~~nPTGSfKDRga~~~i~~a~~---~g--~~~vv~aSsGN~g~slA~~aa~~ 119 (338)
T PRK06450 55 GEGRTPLIKK----------GNIWFKLDFLNPTGSYKDRGSVTLISYLAE---KG--IKQISEDSSGNAGASIAAYGAAA 119 (338)
T ss_pred CCCCCCceec----------CCEEEEecCCCCcCCCHHHHHHHHHHHHHH---cC--CCEEEEECCcHHHHHHHHHHHHc
Confidence 9999999863 269999999999999999999999998754 34 46899999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-ccccCCCChHhHhhHHHHHHHHHHhcCCC
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELP-IYLANSLNSLRLEGQKTAAVEILQQFDWE 321 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~-~~~~ns~Np~~i~G~~T~a~EI~eQl~~~ 321 (521)
|++|+||||++ ++..|+.||+.|||+|+.++++++++.+. +++.+ +|..+.+||++++||+|+++||++|++|+
T Consensus 120 G~~~~i~vP~~-~~~~k~~~i~~~GA~vi~v~~~~~~~~~~----a~~~g~~~~~~~~np~~ieG~kTia~EI~eql~~~ 194 (338)
T PRK06450 120 GIEVKIFVPET-ASGGKLKQIESYGAEVVRVRGSREDVAKA----AENSGYYYASHVLQPQFRDGIRTLAYEIAKDLDWK 194 (338)
T ss_pred CCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHH----HHhcCeEeccCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 99999999997 79999999999999999999999988765 34456 44446689999999999999999999987
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccH
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSI 401 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 401 (521)
.||+||+|+|+||+++|+++||+++.++|++++.||||+||++++++++++|+.+ ...+....+|++++|.++.|..+
T Consensus 195 ~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~--~~~~~~~~~tia~~l~~~~p~~~ 272 (338)
T PRK06450 195 IPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGI--SYTPPDKVTSIADALVSTRPFLL 272 (338)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCC--CCCCCCCCCcceeeeecCCCCCH
Confidence 8999999999999999999999999999999999999999999999999999844 34444556899999999999999
Q ss_pred HHHHHHHHhcCCeEEEeCHHHHHHHHHHHHhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCc
Q 009957 402 DRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKF 474 (521)
Q Consensus 402 ~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~ 474 (521)
.+.+++++++ |.++.|+|+|+++|+++|.++|+++||++|+++||++++ ++++||+++||||+|.
T Consensus 273 ~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~~Gi~vepssaaalAa~~~l-------~~~~vv~vltG~glK~ 337 (338)
T PRK06450 273 DYMVKALSEY-GECIVVSDNEIVEAWKELAKKGLLVEYSSATVYAAYKKY-------SVNDSVLVLTGSGLKV 337 (338)
T ss_pred HHHHHHHHhc-CcEEEECHHHHHHHHHHHHHcCCEEChhHHHHHHHHHHC-------CCCCEEEEeCCCCccC
Confidence 9999999998 789999999999999998668999999999999999986 2468999999999995
No 9
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=2.5e-68 Score=561.57 Aligned_cols=360 Identities=21% Similarity=0.292 Sum_probs=308.1
Q ss_pred CCCCCCCccCCCCceeecC-CCCcceeccccchhccCChHHHHHhhhhccCCCCCCCCCccccccccccCCCCcchhhcc
Q 009957 84 AGPDSPEFYSLDEIVYRSR-SGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSA 162 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~~c~-cGGll~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl 162 (521)
.|.+||++|+ ++..++|+ |||+|++.||++.++. + ..++||||++| ||..+. ++
T Consensus 4 ~C~~Cg~~~~-~~~~~~C~~c~g~l~~~y~~~~~~~----------~---------~~~~~wry~~~-lP~~~~----~~ 58 (398)
T TIGR03844 4 RCPGCGEVLP-DHYTLSCPLDCGLLRAEYAERQLTL----------R---------DLPGIFRYYDW-LPVTGH----LR 58 (398)
T ss_pred EeCCCCCccC-CccccCCCCCCCceEEeeccccccc----------c---------cCCchhhhHhh-CCCCCC----CC
Confidence 5999999998 66678995 9999999998652110 0 02489999995 886432 67
Q ss_pred cccCCccccccccccccCCCCcEEEecCC-------CCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHH
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCG-------ISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAAL 235 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~-------~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~Al 235 (521)
++|.|||+++++|+++ +|+.++|+|+|+ +||||||||||+.++++.+.+ .| .+.|+++||||||+|+
T Consensus 59 ~~g~tpl~~~~~L~~~-lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~---~g--~~~Vv~aSsGN~g~al 132 (398)
T TIGR03844 59 TRGGPVTYKSEGLARE-LGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKE---RG--GKTLVVASAGNTGRAF 132 (398)
T ss_pred CCCCCceeehHHHHHH-hCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHH---cC--CCEEEEECCCHHHHHH
Confidence 8889999999999987 898889995555 899999999999999987754 34 4679999999999999
Q ss_pred HHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCC-CChHhHhhHHHHHHHH
Q 009957 236 SAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANS-LNSLRLEGQKTAAVEI 314 (521)
Q Consensus 236 Aa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np~~i~G~~T~a~EI 314 (521)
|+||+++|++|+||||++. +..+...+..+||+|+.++++||++.+.+++++++.++|..++ .||++++||+|+++||
T Consensus 133 A~~aa~~Gi~~~I~vP~~~-~~~~~~~~~~~ga~vv~v~g~~d~a~~~a~~~a~~~g~~~~~~~~~p~~ieG~~Ti~~Ei 211 (398)
T TIGR03844 133 AEVSAITGQPVILVVPKSS-ADRLWTTEPASSVLLVTVDGDYTDAIALADRIATLPGFVPEGGARNVARRDGMGTVMLDA 211 (398)
T ss_pred HHHHHHcCCcEEEEECCCh-HHHHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHhCCccccCCCCCHHHHhhHHHHHHHH
Confidence 9999999999999999973 3322222478999999999999999999999998888765554 4999999999999999
Q ss_pred HHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCC-CCCCeEEEeccCCCchhhHHHhhCCcceeeccc-c------
Q 009957 315 LQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLV-DRMPRLVCTQAANANPLYLYYKSGWKDFKAVKA-S------ 386 (521)
Q Consensus 315 ~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~-~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~-~------ 386 (521)
+||++ ..||+||||+|+|+++.|+|++|+++.++|++ +++||+++||+++|+|++++|++|.....+... .
T Consensus 212 ~eql~-~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~ 290 (398)
T TIGR03844 212 AVTIG-SLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSI 290 (398)
T ss_pred HHHcC-CCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccc
Confidence 99998 46999999999999999999999999999987 488999999999999999999999754443311 1
Q ss_pred -cchhhhhccCCCccHH--HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCe
Q 009957 387 -TTFASAIQIGDPVSID--RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDR 462 (521)
Q Consensus 387 -~Tia~~i~i~~P~~~~--~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~ 462 (521)
+|+++++.++.|.+.. .+++++++++|.++.|+|+||++|+++| +++|+++||++|+++||++++.++|.+.++++
T Consensus 291 ~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~ 370 (398)
T TIGR03844 291 EEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDD 370 (398)
T ss_pred cceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCe
Confidence 6899999998886543 6789999999999999999999999997 67999999999999999999999999989999
Q ss_pred EEEEeCCCCCCchH
Q 009957 463 TVVVSTAHGLKFTQ 476 (521)
Q Consensus 463 vV~v~TG~g~K~~~ 476 (521)
||+++||+|+|+..
T Consensus 371 Vv~vlTG~glK~~~ 384 (398)
T TIGR03844 371 ILLNITGGGYKRLR 384 (398)
T ss_pred EEEEECCcchhhHH
Confidence 99999999999653
No 10
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=2.9e-64 Score=537.04 Aligned_cols=405 Identities=25% Similarity=0.345 Sum_probs=324.3
Q ss_pred eeecCCCCCCCCCCccCCCCceeec--CCCCcceeccccchhccCChHHHHHhhhhccCCCCCCCCC---cccccccccc
Q 009957 77 AKYVPFNAGPDSPEFYSLDEIVYRS--RSGGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGS---GVWSKKEWVL 151 (521)
Q Consensus 77 ~~~v~~~~~~~cg~~~~~~~~~~~c--~cGGll~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~iwr~~~~~l 151 (521)
|+|+ |||+....++|.++++.+ +|||||+| +.+|+++.+.|+.|.+. +|.. .|+ +.|+.
T Consensus 1 M~y~---STR~~~~~~sf~eail~Gla~DGGLyvP----~~~P~l~~~~~~~~~~~-------sy~~~a~~il--~~f~~ 64 (462)
T PRK09225 1 MKYI---STRGNAPQVSFSEAVLQGLAPDGGLYVP----EELPKLSAEEIDALLGL-------SYAELAFEIL--SAFVG 64 (462)
T ss_pred CeeE---eCCCCCCCCCHHHHHhcCCCCCCceEeC----cccCCCCHHHHHHHhCC-------CHHHHHHHHH--HHhcc
Confidence 8999 999999999999999996 79999987 78999987766554321 1211 333 34445
Q ss_pred CCCCcchhhcccccCCccccccccccccCCC-CcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCch
Q 009957 152 PEIDPDDIVSAFEGNSNLFWAERFGKQFLGM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGD 230 (521)
Q Consensus 152 P~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~-~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN 230 (521)
++++++++..+.+....-+..+...+. ..+ +++|+.+++||||||||||+++++...+.++.+ + +...|+++||||
T Consensus 65 ~~i~~~~l~~~i~~ay~~F~~~~~~pl-~~l~~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~-~~~~Il~ATSGd 141 (462)
T PRK09225 65 DDIPEDDLKAIIARAYTTFDHPAIAPL-VQLDDNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-G-EKITILGATSGD 141 (462)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcCccce-EEeCCCceeHhhccCCccchhhhHHHHHHHHHHHHHh-C-CCcEEEEcCCCc
Confidence 678888887776654321221111111 112 279999999999999999999996555544444 4 246799999999
Q ss_pred HHHHH-HHHHHhcCCCEEEEccCCcCCHHhHHhHHhC-CCE--EEEECCCHHHHHHHHHHHHhc------CCccccCCCC
Q 009957 231 TSAAL-SAYCASAGIPSIVFLPANKISIAQLVQPIAN-GAF--VLSIDTDFDGCMKLIREVTSE------LPIYLANSLN 300 (521)
Q Consensus 231 ~g~Al-Aa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~-GA~--Vi~v~g~~dd~~~~~~~~~~~------~~~~~~ns~N 300 (521)
||.|+ ++|+++.|++|+||+|++++|+.|+.||..+ |++ ++.|+|+||||+..+++++.+ .+++.+|++|
T Consensus 142 tG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saNSiN 221 (462)
T PRK09225 142 TGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSIN 221 (462)
T ss_pred HHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEeccC
Confidence 99877 8999999999999999988999999999998 775 599999999999999998776 6799999999
Q ss_pred hHhHhhHHHHHHHHHHhcCCC--CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCc
Q 009957 301 SLRLEGQKTAAVEILQQFDWE--VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWK 378 (521)
Q Consensus 301 p~~i~G~~T~a~EI~eQl~~~--~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~ 378 (521)
|+|++||+++++|+++|++|. .||+|+||+||||+++|+|+| ++||+ |++|+|++++.| +++.+++.+|.
T Consensus 222 ~~Ri~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A----k~mGl--pi~kli~A~n~n-~~l~~~~~~G~- 293 (462)
T PRK09225 222 IGRLLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA----KKMGL--PIKRLIVATNEN-DVLTRFLKTGV- 293 (462)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH----HHcCC--CcceEEEEecCC-hHHHHHHHcCC-
Confidence 999999999999999999873 599999999999999999964 89999 699999998544 68899999996
Q ss_pred ceeecccccchhhhhccCCCccHHH------------H---HHHHHhcCC---------------eEEEeCHHHHHHHHH
Q 009957 379 DFKAVKASTTFASAIQIGDPVSIDR------------A---VYALKNCNG---------------IVEEATEEELMDAMA 428 (521)
Q Consensus 379 ~~~~~~~~~Tia~~i~i~~P~~~~~------------~---l~~l~~~~g---------------~~v~Vsd~Ei~~A~~ 428 (521)
+.+.+..+|++++|+|+.|+|++| + ++.+++++| ..+.|+|+|++++++
T Consensus 294 -y~~~~~~~T~s~amdI~~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~ 372 (462)
T PRK09225 294 -YDPRPTVATLSPAMDISVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIR 372 (462)
T ss_pred -CccCCCCCCcCchhhcCCCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHH
Confidence 344456789999999999999999 5 334445777 778999999999999
Q ss_pred HH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhhcch------hHHhhhhhcCCCcccC
Q 009957 429 QA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKE------IKDMACRFANPPVQVK 501 (521)
Q Consensus 429 ~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 501 (521)
++ +++|+++|||||++++|+.++. .+++++|+++||||+||++++.+..... +.++.... ..-..++
T Consensus 373 ~~~~~~G~~~dPhtAva~aa~~~~~-----~~~~~~V~l~Ta~p~Kf~~~v~~a~~~~~~~p~~l~~l~~~~-~~~~~~~ 446 (462)
T PRK09225 373 EVYEEYGYLIDPHTAVAYKAAREYL-----DPGEPGVVLSTAHPAKFPEVVEEALGEEPPLPAALAGLEDRP-LRSTVLP 446 (462)
T ss_pred HHHHhCCEEECchHHHHHHHHHHhh-----CCCCCEEEEecCCccCCHHHHHHhcCCCCCCChhHHHHhcCc-ccceecC
Confidence 97 7899999999999999998863 3567899999999999999998764222 22222111 1123677
Q ss_pred CCHHHHHHHHHHHh
Q 009957 502 ADFGAVMDVLKKYL 515 (521)
Q Consensus 502 ~~~~~~~~~~~~~~ 515 (521)
.|.+++++.|.+..
T Consensus 447 ~~~~~~~~~i~~~~ 460 (462)
T PRK09225 447 ADFAALKAFLLEHL 460 (462)
T ss_pred CCHHHHHHHHHHhh
Confidence 89999999888754
No 11
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=2.7e-63 Score=529.89 Aligned_cols=375 Identities=25% Similarity=0.348 Sum_probs=308.7
Q ss_pred eecCCCCCCCCCCccCCCCceeec--CCCCcceeccccchhccCChHHHHHhh----hhccCCCCCCCCCcccccccccc
Q 009957 78 KYVPFNAGPDSPEFYSLDEIVYRS--RSGGLLDVQHDMESLKKFDGAYWRDLF----DSRVGKTTWPYGSGVWSKKEWVL 151 (521)
Q Consensus 78 ~~v~~~~~~~cg~~~~~~~~~~~c--~cGGll~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~iwr~~~~~l 151 (521)
||+ |||+-...++|.++++.+ +|||||+| +.+|+++.+.+..|. .+.+. .|. +.|+-
T Consensus 1 ~y~---STR~~~~~~~f~~ail~Gla~DGGLyvP----~~~P~~~~~~~~~~~~~sy~~~a~--------~vl--~~f~~ 63 (460)
T cd01560 1 KYV---STRGGNPGVSFSEALLSGLAPDGGLYVP----EELPKLSAEEIASWSGLSYQELAF--------EVL--SLFIG 63 (460)
T ss_pred Cce---eCCCCCCCCCHHHHHhcCCCCCCceecC----cccCCCCHHHHHHHhCCCHHHHHH--------HHH--HHHhc
Confidence 688 999999999999999986 79999987 789999877655442 22221 233 34333
Q ss_pred CCCCcchhhcccccCCccccccccccccCCC-CcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCch
Q 009957 152 PEIDPDDIVSAFEGNSNLFWAERFGKQFLGM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGD 230 (521)
Q Consensus 152 P~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~-~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN 230 (521)
++++++++..+.+....-+..+...+. ..+ +++|+++++||||||||||+++++...+.++.+...+...|+++||||
T Consensus 64 ~~i~~~~L~~~i~~ay~~F~~~~~~pl-~~l~~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGd 142 (460)
T cd01560 64 DEIPEDDLKSLIDRAYSFFRHPDIAPL-VQLGDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGD 142 (460)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCccce-EEeCCCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCc
Confidence 678888887777654332222222211 122 379999999999999999999998766665543322356899999999
Q ss_pred HHHH-HHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCC---EEEEECCCHHHHHHHHHHHHhc------CCccccCCCC
Q 009957 231 TSAA-LSAYCASAGIPSIVFLPANKISIAQLVQPIANGA---FVLSIDTDFDGCMKLIREVTSE------LPIYLANSLN 300 (521)
Q Consensus 231 ~g~A-lAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA---~Vi~v~g~~dd~~~~~~~~~~~------~~~~~~ns~N 300 (521)
||.| +++|+++.|++|+||+|++++|+.|+.||..+|+ +++.|+|+||||+..+++++++ .+++.+|++|
T Consensus 143 TG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~~~~~l~saNSiN 222 (460)
T cd01560 143 TGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSANSIN 222 (460)
T ss_pred HHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCCHHHHHHHHHHHhcChhhHhcceEEEEeccC
Confidence 9888 5999999999999999998899999999999986 9999999999999999998776 4789999999
Q ss_pred hHhHhhHHHHHHHHHHhcCCC---CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCC
Q 009957 301 SLRLEGQKTAAVEILQQFDWE---VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGW 377 (521)
Q Consensus 301 p~~i~G~~T~a~EI~eQl~~~---~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~ 377 (521)
|+|++||+++++|+++|++|+ .|++|+||+||||+++|+|+| ++||+ |++|+|+++++| +.+.++|++|.
T Consensus 223 ~~Ri~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~A----k~mGl--pi~kli~a~n~n-~il~~~~~~G~ 295 (460)
T cd01560 223 WARILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYA----KKMGL--PIKKLIVATNEN-DVLRRFFKTGR 295 (460)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHH----HHcCC--CCccEEEEeCCC-hHHHHHHHcCC
Confidence 999999999999999999875 799999999999999999965 67999 799999976543 34567889996
Q ss_pred cceeecccccchhhhhccCCCccHHHHHHHHHhcCC------------------------------eEEEeCHHHHHHHH
Q 009957 378 KDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNG------------------------------IVEEATEEELMDAM 427 (521)
Q Consensus 378 ~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g------------------------------~~v~Vsd~Ei~~A~ 427 (521)
++..+ ....|++++|+|+.|+|++|+++.+++++| ..+.|+|+|+++++
T Consensus 296 y~~~~-~~~~T~spamdI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i 374 (460)
T cd01560 296 YDRRE-SLKQTLSPAMDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETI 374 (460)
T ss_pred CcCCC-CCCCCcCchhhcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHH
Confidence 44332 456899999999999999999999998888 67899999999999
Q ss_pred HHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhh
Q 009957 428 AQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYH 482 (521)
Q Consensus 428 ~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~ 482 (521)
+++ +++|+++|||||++++|+.++.++ +++++|+++||||+||++++.+..
T Consensus 375 ~~~~~~~G~~vdPhtAva~aa~~~~~~~----~~~~~V~l~Ta~p~Kf~~~v~~a~ 426 (460)
T cd01560 375 REVYEETGYLIDPHTAVGVRAAERVRKS----PGTPGVVLSTAHPAKFPEAVKEAL 426 (460)
T ss_pred HHHHHhcCEEECchHHHHHHHHHHHHhc----cCCCEEEEecCCcccCHHHHHHhh
Confidence 997 779999999999999999987754 456899999999999999987654
No 12
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.8e-60 Score=492.20 Aligned_cols=325 Identities=36% Similarity=0.560 Sum_probs=289.8
Q ss_pred cccccccccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceE
Q 009957 143 VWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVG 222 (521)
Q Consensus 143 iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~ 222 (521)
+|||++| ||..+++.+++|++|+|||++++++... +|..+||+|+|++|||||||||++.+++..+.+ .| ..+
T Consensus 1 ~~~~~~~-lp~~~~~~~~~l~~g~TPl~~~~~l~~~-~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~---~g--~~~ 73 (328)
T TIGR00260 1 VWRYREF-LPVTPEKDLVDLGEGVTPLFRSPALVAN-VGIKNLYVLELFHNPTLSFKDRGMAVALTKALE---LG--NDT 73 (328)
T ss_pred Cccchhh-cCCCChhhhhhhccCCccCccchHHHHh-cCCccEEehhhccCCchhhHhhhHHHHHHHHHH---cC--CCE
Confidence 6999995 8987667789999999999999998776 665589999999999999999999998887643 34 357
Q ss_pred EEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCC--
Q 009957 223 VGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLN-- 300 (521)
Q Consensus 223 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~N-- 300 (521)
|+++||||||.|+|++|+..|++|+|+||++.+++.|+.+++.+||+|+.++++++++++.+++++++.+++..++.|
T Consensus 74 vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 153 (328)
T TIGR00260 74 VLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNSVNSI 153 (328)
T ss_pred EEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecCCHHHHHHHHHHHHhhcCeeecccCCCC
Confidence 999999999999999999999999999999756899999999999999999999999999999999877777788888
Q ss_pred hHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcce
Q 009957 301 SLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDF 380 (521)
Q Consensus 301 p~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~ 380 (521)
|.+++||+|+++||++|+++..||+||+|+|+||+++|++++|++++.+|+ ++.|++++||+++++++...|..+. ..
T Consensus 154 ~~~~~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~-~~~p~v~~Ve~~~~~~~~~~~~~~g-~~ 231 (328)
T TIGR00260 154 PYRLEGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGL-DSLPVKRGIQAEGAADIVRAFLESG-QW 231 (328)
T ss_pred CeEeeeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCC-ccCCceeEEEcCCCChHHHHHHcCC-Cc
Confidence 999999999999999999865699999999999999999999998888887 6678999999999988877774332 23
Q ss_pred eecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCC
Q 009957 381 KAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGP 459 (521)
Q Consensus 381 ~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~ 459 (521)
.+....+|++++++++.|.++++.+++++.+.+.++.|+|+|++++++++ +++|+++||++|+++||++++.+++.+.+
T Consensus 232 ~~~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~ 311 (328)
T TIGR00260 232 EPIEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADP 311 (328)
T ss_pred CcCCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCC
Confidence 44444579999999999999999999999999999999999999999997 78999999999999999999988877778
Q ss_pred CCeEEEEeCCCCCCchH
Q 009957 460 LDRTVVVSTAHGLKFTQ 476 (521)
Q Consensus 460 ~~~vV~v~TG~g~K~~~ 476 (521)
+++||+++||+|.|+++
T Consensus 312 ~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 312 AERVVCALTGNGLKDPE 328 (328)
T ss_pred CCcEEEEecCCCCCCCC
Confidence 89999999999999864
No 13
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.9e-59 Score=489.21 Aligned_cols=346 Identities=37% Similarity=0.599 Sum_probs=301.8
Q ss_pred CCCCccccccccccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcC
Q 009957 138 PYGSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMK 217 (521)
Q Consensus 138 ~~~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g 217 (521)
|+...+|||++| ||..+...+++|++|+|||++++.+... +|. +||+|+|++|||||||||++.+++..+. +.|
T Consensus 4 ~~~~~~~~~~~~-lp~~~~~~~~~l~~g~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGSfKdR~a~~~l~~a~---~~g 77 (353)
T PRK07409 4 RWPGLIEAYRDR-LPVTDDTPVVTLGEGNTPLIPAPNLSEL-LGV-EVYVKYEGLNPTGSFKDRGMTMAVTKAK---EEG 77 (353)
T ss_pred cCccchHHHHHh-CCCCCccCcccCCCCCCCEEEchhhHHH-hCC-eEEEEecCCCCccchHHHHHHHHHHHHH---HCC
Confidence 445679999995 8987666779999999999999998876 564 8999999999999999999999998764 334
Q ss_pred CCceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccC
Q 009957 218 RPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLAN 297 (521)
Q Consensus 218 ~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~n 297 (521)
..+|+++||||||+|+|++|+.+|++|+||||++.++..|+.+|+.+||+|+.++++++++.+.+++++++.++++.|
T Consensus 78 --~~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l~~~~~~~~~~ 155 (353)
T PRK07409 78 --AKAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDGNFDDALEIVRELAEKYPVTLVN 155 (353)
T ss_pred --CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCceecC
Confidence 357999999999999999999999999999999755788999999999999999999999999999999888888899
Q ss_pred CCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCC
Q 009957 298 SLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGW 377 (521)
Q Consensus 298 s~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~ 377 (521)
++||.+++||+|+++||++|++ ..||+||+|+|+||+++|+++||+++...|+.++.+|||+|||++++++.. |.
T Consensus 156 ~~n~~~~~g~~t~~~EI~~q~~-~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~----g~ 230 (353)
T PRK07409 156 SVNPYRIEGQKTAAFEIVDALG-DAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVR----GE 230 (353)
T ss_pred CCCchhhhhHHHHHHHHHHHhC-CCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhh----CC
Confidence 9999999999999999999997 369999999999999999999999988888766779999999999877652 32
Q ss_pred cceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCC
Q 009957 378 KDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGV 456 (521)
Q Consensus 378 ~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~ 456 (521)
+.....|++++++++.|.++.+.+..++++.+.++.|+|+|++++++++ +++|+++||++|+++|+++++.+++.
T Consensus 231 ----~~~~~~ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~ 306 (353)
T PRK07409 231 ----PVKNPETIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGK 306 (353)
T ss_pred ----cCCCCcceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCC
Confidence 1223468889999888998888777788888999999999999999997 78999999999999999999887776
Q ss_pred CCCCCeEEEEeCCCCCCchHHHHhhhcchhHHhhhhhcCCCcccCCCHHHHHHHH
Q 009957 457 IGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVL 511 (521)
Q Consensus 457 i~~~~~vV~v~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (521)
+.++++||+++||+|.||.+++.+.+. +++..+++|+.++.+.+
T Consensus 307 ~~~~~~VV~i~tg~g~k~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 350 (353)
T PRK07409 307 IPEGSTVVCTLTGNGLKDPDTAIKQAD-----------NEPTTVPPDLDAVAEAL 350 (353)
T ss_pred CCCCCcEEEEecCccccchHHHHhhcc-----------cCcccCCCcHHHHHHHh
Confidence 778899999999999999998754332 34556788998886655
No 14
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.6e-59 Score=488.87 Aligned_cols=326 Identities=36% Similarity=0.540 Sum_probs=287.8
Q ss_pred CCccccccccccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCC
Q 009957 140 GSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 219 (521)
Q Consensus 140 ~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~ 219 (521)
...||||++ +||..+...+++|++|+|||++++++... +|. +||+|+|++|||||||||++.+++..+. +.|
T Consensus 3 ~~~~~ry~~-~lp~~~~~~~~~l~~G~TPL~~~~~l~~~-~g~-~l~~K~E~~nptGS~KdR~a~~~i~~a~---~~g-- 74 (351)
T PRK06352 3 KGLLEKYKE-YLPVTDKTPMISLAEGNTPLIPLPNLSKE-LGV-TLYGKYEGLNPTGSFKDRGMVMAVAKAK---EEG-- 74 (351)
T ss_pred CchHHHHHH-hCCCCCCcCccccCCCCCCeeEcHhhHHH-hCC-eEEEEecCCCCccChHHHHHHHHHHHHH---HCC--
Confidence 457999999 59987666679999999999999998876 675 7999999999999999999999998764 334
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL 299 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~ 299 (521)
..+|+++||||||+|+|++|+++|++|+||||++..+..|+.+|+.+||+|+.++++++++.+.+++++++.+++..|++
T Consensus 75 ~~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (351)
T PRK06352 75 AEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLVNSV 154 (351)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcccccCC
Confidence 35799999999999999999999999999999974578899999999999999999999999999999988888889989
Q ss_pred ChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcc
Q 009957 300 NSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKD 379 (521)
Q Consensus 300 Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~ 379 (521)
||++++||+|+++||++|++ ..||+||+|+|+||+++|++++|+++...+ +++.+|||+|||++++++.. |.
T Consensus 155 n~~~~~G~~t~~~EI~~Q~~-~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~-~~~~~~vi~Vep~g~~~~~~----g~-- 226 (351)
T PRK06352 155 NPYRLEGQKTAAFEICEQLG-SAPDVLAIPVGNAGNISAYWKGFKEWNEAK-ASGLPRMHGFEAEGAAAIVQ----GK-- 226 (351)
T ss_pred CccceeeHHHHHHHHHHHcC-CCCCEEEEECCchHHHHHHHHHHHHHHhcC-CCCCCEEEEEeeCCCCHHHh----CC--
Confidence 99999999999999999997 479999999999999999999999988877 67889999999999877542 32
Q ss_pred eeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCC
Q 009957 380 FKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIG 458 (521)
Q Consensus 380 ~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~ 458 (521)
+.....|+++++.++.|..+......+++++|.++.|+|+|+++|+++| +++|+++||++|+++||++++.+++.+.
T Consensus 227 --~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~ 304 (351)
T PRK06352 227 --PIDNPETIATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIK 304 (351)
T ss_pred --CcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCC
Confidence 1123468888888888877776666777888889999999999999998 7799999999999999999988877677
Q ss_pred CCCeEEEEeCCCCCCchHHHHhhhc
Q 009957 459 PLDRTVVVSTAHGLKFTQSKIDYHS 483 (521)
Q Consensus 459 ~~~~vV~v~TG~g~K~~~~~~~~~~ 483 (521)
++++||+++||+|.||++++.+++.
T Consensus 305 ~~~~Vv~v~tg~G~~~~~~~~~~~~ 329 (351)
T PRK06352 305 KGETVVCVFTGNGLKDPDTAMSVHE 329 (351)
T ss_pred CCCcEEEEeCCCCcCChHHHHhhcC
Confidence 7889999999999999999865554
No 15
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.1e-57 Score=475.40 Aligned_cols=346 Identities=35% Similarity=0.507 Sum_probs=296.1
Q ss_pred CCccccccccccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCC
Q 009957 140 GSGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 219 (521)
Q Consensus 140 ~~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~ 219 (521)
...+|||++| ||..+....+++.+|+|||++++++.+. +|. +||+|+|++|||||||||++.+++..++ +.|
T Consensus 3 ~~~~~ry~~~-lp~~~~~~~~~l~~G~TPl~~l~~l~~~-~g~-~i~~K~E~~nptGS~KdR~a~~~i~~a~---~~g-- 74 (352)
T PRK06721 3 KGLLNQYASY-LPVNENTPDVSLMEGNTPLIPLLNISKQ-LGI-QLYGKYEGANPTGSFKDRGMVMAVAKAK---EEG-- 74 (352)
T ss_pred cchHHHHHHh-CCCCCCCCccccCcCCCCeeEchhhHHH-hCC-eEEEEecCCCCccchHHHHHHHHHHHHH---HCC--
Confidence 4579999995 8976566678999999999999998876 675 8999999999999999999999998764 334
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL 299 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~ 299 (521)
..+|+++||||||.|+|++|+++|++|+|+||++..++.|+.+|+.+||+|+.++++++++.+.+++++++.++++.|+.
T Consensus 75 ~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 154 (352)
T PRK06721 75 SEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNSV 154 (352)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCceeccCC
Confidence 46899999999999999999999999999999974577899999999999999999999999999999998888888989
Q ss_pred ChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHH-cCCCCCCCeEEEeccCCCchhhHHHhhCCc
Q 009957 300 NSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHE-LGLVDRMPRLVCTQAANANPLYLYYKSGWK 378 (521)
Q Consensus 300 Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~-~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~ 378 (521)
||.+++||+|+++||++|++. .||+||+|+|+||+++|+++||.++.+ .|. +.+|||+|||++++++.+ |.
T Consensus 155 n~~~~~G~~t~~~Ei~eq~~~-~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~--~~~~vigVep~~~~~~~~----g~- 226 (352)
T PRK06721 155 NPYRIEGQKTAAFEICDQLQR-APDVLAIPVGNAGNITAYWKGFCEYEKEKGY--KKPRIHGFEAEGAAAIVK----GH- 226 (352)
T ss_pred CchhhhhhhhHHHHHHHHhCC-CCCEEEEeCCchHHHHHHHHHHHHHHHhcCC--CCCeEEEEecCCCChHhh----CC-
Confidence 999999999999999999973 699999999999999999999976644 443 678999999999887643 31
Q ss_pred ceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCC
Q 009957 379 DFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVI 457 (521)
Q Consensus 379 ~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i 457 (521)
......|+++++.++.|..+...+..++...|.++.|+|+|+++++++| +++|+++||++|+++||++++.+++.+
T Consensus 227 ---~~~~~~tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~ 303 (352)
T PRK06721 227 ---VIDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKI 303 (352)
T ss_pred ---cCCCCCceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCC
Confidence 1234568888999888888777777778888999999999999999997 789999999999999999999888777
Q ss_pred CCCCeEEEEeCCCCCCchHHHHhhhcchhHHhhhhhcCCCcccCCCHHHHHHHHHHHh
Q 009957 458 GPLDRTVVVSTAHGLKFTQSKIDYHSKEIKDMACRFANPPVQVKADFGAVMDVLKKYL 515 (521)
Q Consensus 458 ~~~~~vV~v~TG~g~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (521)
.++++||+++||+|.||.+.+.+ +.-.....+.++++++++.++..+
T Consensus 304 ~~~~~Vv~v~~g~g~k~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
T PRK06721 304 KKGETVVAVLTGNGLKDPDIAIS-----------SNTLDIASVSNNIEQIKEHIKGVI 350 (352)
T ss_pred CCCCeEEEEeCCCCcCchHHHhh-----------hccCCcccCCccHHHHHHHHHHHh
Confidence 88899999999999999988731 100011235778888888777654
No 16
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=2.6e-57 Score=467.86 Aligned_cols=322 Identities=47% Similarity=0.743 Sum_probs=287.0
Q ss_pred cccccccccCCCCcchhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceE
Q 009957 143 VWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVG 222 (521)
Q Consensus 143 iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~ 222 (521)
+|||+.| ||.. ....++|++|+|||++++++.+. +|..+||+|+|++|||||||||++.+++..+.+ .| .++
T Consensus 1 ~~~~~~~-~~~~-~~~~~~l~~g~TPl~~~~~l~~~-~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~---~g--~~~ 72 (324)
T cd01563 1 LWRYREL-LPVT-EDDIVSLGEGNTPLVRAPRLGER-LGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKE---LG--VKA 72 (324)
T ss_pred Cccchhh-CCCC-CCCcccCCCCCCceeechhhHhh-cCCCceEEEecCCCCcccHHHhhHHHHHHHHHH---cC--CCE
Confidence 5999995 8954 34569999999999999998876 554589999999999999999999999887653 34 457
Q ss_pred EEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCC-CCh
Q 009957 223 VGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANS-LNS 301 (521)
Q Consensus 223 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np 301 (521)
|+++||||||.|+|++|+.+|++|+|+||++ .++.|+.+|+.+||+|+.++++++++.+.+++++++. ++++++ .||
T Consensus 73 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-~~~~k~~~l~~~GA~Vi~~~~~~~~~~~~a~~~~~~~-~~~~~~~~n~ 150 (324)
T cd01563 73 VACASTGNTSASLAAYAARAGIKCVVFLPAG-KALGKLAQALAYGATVLAVEGNFDDALRLVRELAEEN-WIYLSNSLNP 150 (324)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCceEEEEeCC-CCHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHhc-CeeccCCCCc
Confidence 9999999999999999999999999999998 6899999999999999999999999999999998877 555554 689
Q ss_pred HhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCccee
Q 009957 302 LRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFK 381 (521)
Q Consensus 302 ~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~ 381 (521)
.+++||.|++.||++|+++..||+||+|+|+||+++|++++|+++..+|++++.++||+||+.++++++++++.|.....
T Consensus 151 ~~~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~ 230 (324)
T cd01563 151 YRLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIE 230 (324)
T ss_pred ceecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccC
Confidence 99999999999999999754699999999999999999999999999999888899999999999999999998854444
Q ss_pred ecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCC
Q 009957 382 AVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPL 460 (521)
Q Consensus 382 ~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~ 460 (521)
......|++++++++.|.++.+.++.+++..+.++.|+|+|++++++++ +++|+++||++|++++|++++.+++.+.++
T Consensus 231 ~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~ 310 (324)
T cd01563 231 PVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKG 310 (324)
T ss_pred cCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCC
Confidence 5556689999999988888888888888889999999999999999997 778999999999999999999887766778
Q ss_pred CeEEEEeCCCCCCc
Q 009957 461 DRTVVVSTAHGLKF 474 (521)
Q Consensus 461 ~~vV~v~TG~g~K~ 474 (521)
++||+++||+|.|+
T Consensus 311 ~~Vv~v~tg~g~~~ 324 (324)
T cd01563 311 ERVVVVLTGHGLKD 324 (324)
T ss_pred CcEEEEeCCCccCC
Confidence 99999999999985
No 17
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=1.5e-52 Score=445.61 Aligned_cols=331 Identities=16% Similarity=0.147 Sum_probs=275.6
Q ss_pred cccccccccCCCCcchhhcccccCCccccccccccccCCC-------CcEEEecCCCCC-CCChhHHHHHHHHHHHHH--
Q 009957 143 VWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGM-------NDLWVKHCGISH-TGSFKDLGMTVLVSQVNR-- 212 (521)
Q Consensus 143 iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~-------~~l~vK~E~~nP-TGSfKDRga~~~v~~a~~-- 212 (521)
|++|.+ +||.+.++..++++++.|||++++.++.. +|. .+||+|+|++|| ||||||||+.+++..+..
T Consensus 53 i~~~~~-~~~~~~~~~~~~~~~~~TPL~~~~~l~~~-~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~ 130 (441)
T PRK02991 53 LKRFAP-YLAKAFPETAATGGIIESPLVAIPAMQKA-LEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKL 130 (441)
T ss_pred HHhhhh-hhhhhCccccccCCccCCCceehHHHHHH-hcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHH
Confidence 455556 57877677788999999999999988765 552 489999999999 999999999988876432
Q ss_pred HHhcCC---C----------------ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEE
Q 009957 213 LRKMKR---P----------------VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSI 273 (521)
Q Consensus 213 ~~~~g~---~----------------~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v 273 (521)
..+.|. + .++|+++||||||.|+|++|+++|++|+||||++ +++.|+.+|+.|||+|+.+
T Consensus 131 a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~-a~~~K~~~ir~~GAeVi~~ 209 (441)
T PRK02991 131 ALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSAD-ARQWKKDKLRSHGVTVVEY 209 (441)
T ss_pred HHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHhCCCEEEEE
Confidence 123331 0 1369999999999999999999999999999997 7999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcC-CccccCCC-ChHhHhhHHHHHHHHHHhcCC-------CCCcEEEEcCCchhHHHHHHHHHH
Q 009957 274 DTDFDGCMKLIREVTSEL-PIYLANSL-NSLRLEGQKTAAVEILQQFDW-------EVPDWVIVPGGNLGNIYAFYKGFK 344 (521)
Q Consensus 274 ~g~~dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~-------~~pD~VvVP~G~Gg~l~G~~kgf~ 344 (521)
+++|+++.+.+++++++. ++|++|++ |+..++||+|+++||++|+++ +.||+||||+|+||+++|++++|+
T Consensus 210 ~~~~~~a~~~A~~la~~~~~~~~~~~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk 289 (441)
T PRK02991 210 EGDYGVAVEEGRKAAESDPNCYFIDDENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLK 289 (441)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEeCCCCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHH
Confidence 999999999999998876 47778876 567899999999999999974 247899999999999999999998
Q ss_pred HHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeec----ccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCH
Q 009957 345 MCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAV----KASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATE 420 (521)
Q Consensus 345 ~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~----~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd 420 (521)
++. .+.+|||+|||+++++++.+++.|....... ....|+++|+.++.|... .+..++++.+.++.|+|
T Consensus 290 ~~~-----~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~--~~~~~~~~vd~~v~VsD 362 (441)
T PRK02991 290 LAF-----GDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGF--VGRAMERLLDGVYTVSD 362 (441)
T ss_pred Hhc-----CCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchh--HHHHHHHhCCeEEEECH
Confidence 652 2457999999999999999999985321111 124699999999988876 45667788899999999
Q ss_pred HHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCC------CC---CCCeEEEEeCCCCCCchHHHHhhhc
Q 009957 421 EELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGV------IG---PLDRTVVVSTAHGLKFTQSKIDYHS 483 (521)
Q Consensus 421 ~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~------i~---~~~~vV~v~TG~g~K~~~~~~~~~~ 483 (521)
+|+++++++| +++|+++||++|+++||+.++.+++. ++ ++++||+++||+..+..+.+.+|..
T Consensus 363 ~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~~~~~~~~ 435 (441)
T PRK02991 363 ETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEEEMEQYLA 435 (441)
T ss_pred HHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHHHHHHHHH
Confidence 9999999987 78999999999999999987654322 33 5889999999999998888766653
No 18
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=1e-51 Score=425.40 Aligned_cols=295 Identities=24% Similarity=0.395 Sum_probs=257.1
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
-|+|||++++++... +|..+||+|+|++|||||||||++.+++..+. +.| .++|+++|+||||.|+|++|+.+|
T Consensus 13 ~g~TPL~~~~~l~~~-~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~---~~g--~~~lv~aSsGN~g~alA~~aa~~G 86 (319)
T PRK06381 13 PGGTPLLRARKLEEE-LGLRKIYLKFEGANPTGTQKDRIAEAHVRRAM---RLG--YSGITVGTCGNYGASIAYFARLYG 86 (319)
T ss_pred CCCCceeEhHhhHHh-cCCceEEEEecCCCCccCcHHHHHHHHHHHHH---HcC--CCEEEEeCCcHHHHHHHHHHHHcC
Confidence 589999999999876 77668999999999999999999999998764 344 367899999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC--Ch-HhHhhHHHHHHHHHHhcCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL--NS-LRLEGQKTAAVEILQQFDW 320 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~--Np-~~i~G~~T~a~EI~eQl~~ 320 (521)
++|+||||.+ ++..|+.+|+.+||+|+.++++++++.+.+++++++.++|+.|+. || ++++|++|+++||++|++
T Consensus 87 ~~~~ivvp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~- 164 (319)
T PRK06381 87 LKAVIFIPRS-YSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKENGIYDANPGSVNSVVDIEAYSAIAYEIYEALG- 164 (319)
T ss_pred CcEEEEECCC-CCHHHHHHHHHcCCEEEEcCCCHHHHHHHHHHHHHHcCcEecCCCCCCcchHhhhHHHHHHHHHHHhC-
Confidence 9999999997 788999999999999999999999999999999888888888865 76 689999999999999998
Q ss_pred CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCC--
Q 009957 321 EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDP-- 398 (521)
Q Consensus 321 ~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P-- 398 (521)
..||+||+|+|+||+++|++++|++++.+|++++.+|||+||+.+++++..++..|.....+.. ..++++ ..+..|
T Consensus 165 ~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~-~~~i~~-~~~~~~~~ 242 (319)
T PRK06381 165 DVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLE-VDEIRE-TAVNEPLV 242 (319)
T ss_pred CCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCC-cchhhh-cccCCCcc
Confidence 4699999999999999999999999999999889999999999999999999998864433322 134443 112222
Q ss_pred ----ccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Q 009957 399 ----VSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAH 470 (521)
Q Consensus 399 ----~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~ 470 (521)
......+..++++.|.++.|+|+|+++++++| +++|+++||++|+++||++++.+++.+ +++||+++||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~--~~~vv~i~tGg 317 (319)
T PRK06381 243 SYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGV--NDNVVAVITGR 317 (319)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCC--CCcEEEEecCC
Confidence 33445677888999999999999999999997 889999999999999999999888755 37999999995
No 19
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.5e-51 Score=423.39 Aligned_cols=302 Identities=20% Similarity=0.250 Sum_probs=257.5
Q ss_pred CCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCCC
Q 009957 166 NSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIP 245 (521)
Q Consensus 166 ~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~ 245 (521)
+|||++++++.+. +|. +||+|+|++|||||||||++.+++..+.+... .+.++|+++||||||.|+|++|+++|++
T Consensus 1 ~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~--~~~~~vv~aSsGN~g~alA~~a~~~G~~ 76 (316)
T cd06448 1 KTPLIESTALSKT-AGC-NVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL--NECVHVVCSSGGNAGLAAAYAARKLGVP 76 (316)
T ss_pred CCCccccchhhHh-hCC-eEEEEeccCCCcCChHHHHHHHHHHHHHHhhc--ccCCeEEEeCCcHHHHHHHHHHHHcCCC
Confidence 5999999998876 664 89999999999999999999999988754322 1246799999999999999999999999
Q ss_pred EEEEccCCcCCHHhHHhHHhCCCEEEEECCC-HHHHHHHHHHHHhcC-CccccCCC-ChHhHhhHHHHHHHHHHhcCCC-
Q 009957 246 SIVFLPANKISIAQLVQPIANGAFVLSIDTD-FDGCMKLIREVTSEL-PIYLANSL-NSLRLEGQKTAAVEILQQFDWE- 321 (521)
Q Consensus 246 ~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~-~dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~- 321 (521)
|+||+|.+ +++.|+.+|+.+||+|+.++++ ++++.+.+++++++. ++++++++ ||.+++|++|+++||++|+++.
T Consensus 77 ~~iv~p~~-~~~~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~ 155 (316)
T cd06448 77 CTIVVPES-TKPRVVEKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGHSSMVDEIAQQLQSQE 155 (316)
T ss_pred EEEEECCC-CCHHHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccccHHHHHHHHHccccC
Confidence 99999997 7899999999999999999998 888888888888876 77888875 8999999999999999999852
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccH
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSI 401 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 401 (521)
.||+||+|+|+||+++|++++|+++ ++ +.++||+|||++++++..+++.|.. ......+|+++|++. |...
T Consensus 156 ~~D~vv~~vG~Gg~~~Gv~~~~k~~---~~--~~~~ii~Vep~g~~~~~~~~~~g~~--~~~~~~~t~a~glg~--~~~~ 226 (316)
T cd06448 156 KVDAIVCSVGGGGLLNGIVQGLERN---GW--GDIPVVAVETEGAHSLNASLKAGKL--VTLPKITSVATSLGA--KTVS 226 (316)
T ss_pred CCCEEEEEeCchHHHHHHHHHHHhc---CC--CCCEEEEEeeCCChHHHHHHHcCCc--EecCCCCchhhccCC--CCcC
Confidence 5999999999999999999999864 32 4689999999999999999998852 222344689998854 4344
Q ss_pred HHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHH-----HHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 402 DRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIK-----LRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 402 ~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~-----l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
...+..++++.+.++.|+|+|+++++++| +++|+++||++|+++||+++ +.+++.+.++++||+++||++.++.
T Consensus 227 ~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~ 306 (316)
T cd06448 227 SQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITL 306 (316)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCH
Confidence 45667777888999999999999999997 78999999999999999984 4455677889999999999988777
Q ss_pred HHHHhh
Q 009957 476 QSKIDY 481 (521)
Q Consensus 476 ~~~~~~ 481 (521)
+.+.+|
T Consensus 307 ~~~~~~ 312 (316)
T cd06448 307 EQLKEY 312 (316)
T ss_pred HHHHHH
Confidence 766444
No 20
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-51 Score=421.95 Aligned_cols=299 Identities=21% Similarity=0.221 Sum_probs=258.7
Q ss_pred ccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHh
Q 009957 162 AFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCAS 241 (521)
Q Consensus 162 l~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~ 241 (521)
-..|+|||++++++++. +|. +||+|+|++|||||||||++.+++..+.+ .+.....|+++|+||||.|+|++|++
T Consensus 17 ~~~~~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~Rga~~~l~~a~~---~~~~~~~vv~aSsGN~g~alA~~a~~ 91 (322)
T PRK06110 17 AAMPPTPQYRWPLLAER-LGC-EVWVKHENHTPTGAFKVRGGLVYFDRLAR---RGPRVRGVISATRGNHGQSVAFAARR 91 (322)
T ss_pred CcCcCCCcccchhHHHH-hCC-eEEEEeccCCCcCCcHHHHHHHHHHHhhh---hcCCCceEEEECCCHHHHHHHHHHHH
Confidence 34599999999999876 675 89999999999999999999998887643 22224569999999999999999999
Q ss_pred cCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCCC
Q 009957 242 AGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWE 321 (521)
Q Consensus 242 ~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~ 321 (521)
+|++|+||||++ .++.|+.+++.+||+|+.++++++++.+.+++++++.++|++|++||..++||+|+++||++|++
T Consensus 92 ~G~~~~ivvp~~-~~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~G~~t~~~Ei~~q~~-- 168 (322)
T PRK06110 92 HGLAATIVVPHG-NSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGLHMVPSFHPDLVRGVATYALELFRAVP-- 168 (322)
T ss_pred cCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCCCCChHHhccchHHHHHHhhCC--
Confidence 999999999997 68889999999999999999999999999999998889999999999999999999999999998
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccH
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSI 401 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 401 (521)
.+|+||+|+|+||+++|++++|+++ + +.+|||+|||+++++++.+++.|.. .+.+...|+++++.+..|.
T Consensus 169 ~~D~vv~pvG~Gg~~~Gv~~~~k~~---~---~~~~vi~Vep~~~~~~~~~~~~g~~--~~~~~~~t~a~gl~~~~~~-- 238 (322)
T PRK06110 169 DLDVVYVPIGMGSGICGAIAARDAL---G---LKTRIVGVVSAHAPAYALSFEAGRV--VTTPVATTLADGMACRTPD-- 238 (322)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHh---C---CCCEEEEEeeCCChHHHHHHHcCCc--ccCCCCCCcccccCCCCcc--
Confidence 6899999999999999999988753 3 5789999999999999999998853 2333457999998776655
Q ss_pred HHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHh
Q 009957 402 DRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480 (521)
Q Consensus 402 ~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~ 480 (521)
...+..+++..+.++.|+|+|+++++++| +++|+++||++|+++++++++.+. .++++||+++|| |..+++.+.+
T Consensus 239 ~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~---~~~~~Vv~i~tG-gn~d~~~~~~ 314 (322)
T PRK06110 239 PEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERER---LAGKRVGLVLSG-GNIDRAVFAR 314 (322)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhh---hCCCcEEEEECC-CCCCHHHHHH
Confidence 33556678889999999999999999997 789999999999999999987654 257899999999 5677887654
Q ss_pred hh
Q 009957 481 YH 482 (521)
Q Consensus 481 ~~ 482 (521)
+.
T Consensus 315 ~~ 316 (322)
T PRK06110 315 VL 316 (322)
T ss_pred HH
Confidence 43
No 21
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1.7e-50 Score=415.77 Aligned_cols=293 Identities=17% Similarity=0.172 Sum_probs=249.2
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.++|||++++++.+. +|. +||+|+|++|||||||||++.+++..+... .+ ..+|+++||||||.|+|++|+++|
T Consensus 17 i~~TPl~~~~~l~~~-~g~-~l~~K~E~~nptGS~K~R~a~~~i~~~~~~--~~--~~~vv~aSsGN~g~alA~~a~~~G 90 (317)
T TIGR02991 17 VEETPLVESPSLSEL-CGV-PVHLKLEHRQTTGSFKLRGATNAVLSLSDT--QR--AAGVVAASTGNHGRALAYAAAEEG 90 (317)
T ss_pred CCCCCceechhhHHh-hCC-eEEEEeccCCCCCCcHHHHHHHHHHhhhHh--cc--CCeEEEECCCHHHHHHHHHHHHhC
Confidence 489999999998876 665 799999999999999999999998875432 12 246899999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||||++ +++.|+.+|+.+||+|+.++++++++.+.+++++++.++++++++ ||.+++||+|+++||++|++ .
T Consensus 91 ~~~~v~~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~a~Ei~~q~~--~ 167 (317)
T TIGR02991 91 VRATICMSEL-VPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVADRGLTMLPPFDHPDIVAGQGTLGLEVVEQMP--D 167 (317)
T ss_pred CCEEEEcCCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEeeCCCCChHHHhhHHHHHHHHHHhCC--C
Confidence 9999999997 788999999999999999999999999999999988899999986 89999999999999999997 5
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
+|+||+|+|+||+++|++++|+++ .|.+|||+|||+++++++.+++.|.. ...+...|+++++..+.+....
T Consensus 168 ~d~vvv~~G~Gg~~~Gi~~~~k~~------~p~~~vigvep~~~~~~~~s~~~g~~--~~~~~~~tia~~l~~g~~~~~~ 239 (317)
T TIGR02991 168 LATVLVPLSGGGLASGVAMAVKAA------RPDTRVIGVSMERGAAMKASLQAGRP--VLVAELPTLADSLGGGIGLDNR 239 (317)
T ss_pred CCEEEEEcChhHHHHHHHHHHHHh------CCCCEEEEEEECCchHHHHHHHcCCc--ccCCCCCChhhhhhhccCCCCH
Confidence 899999999999999999999874 26789999999999999999988852 2234557899988533221112
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHH
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSK 478 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~ 478 (521)
..+..+++..+.++.|+|+|+++++++| +++|+++||++|+++|++++ +.+..+++||+++||++.. ++.+
T Consensus 240 ~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~----~~~~~~~~vvvvltG~n~~-~~~~ 311 (317)
T TIGR02991 240 VTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLA----GKIKNPGPCAVIVSGRNID-MDLH 311 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHc----CccccCCcEEEEeCCCCCC-HHHH
Confidence 2344566788899999999999999997 78999999999999999874 3345678999999999875 4443
No 22
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=4.2e-50 Score=424.35 Aligned_cols=308 Identities=19% Similarity=0.188 Sum_probs=259.4
Q ss_pred cccCCccccccccccccCCCCcEEEecCCC-CCCCChhHHHHHHHHHHHHHHHhcCCC-------------------ceE
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGI-SHTGSFKDLGMTVLVSQVNRLRKMKRP-------------------VVG 222 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~-nPTGSfKDRga~~~v~~a~~~~~~g~~-------------------~~~ 222 (521)
..+.|||+++++++.. +|+.+||+|+|++ ||||||||||+.+.+..+... +.+.+ ...
T Consensus 41 ~~~~TPL~~~~~l~~~-~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~ 118 (399)
T PRK08206 41 GYAPTPLVALPDLAAE-LGVGSILVKDESYRFGLNAFKALGGAYAVARLLAE-KLGLDISELSFEELTSGEVREKLGDIT 118 (399)
T ss_pred CCCCCCCcchHHHHHH-hCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHH-HhCCCcccCCHHHhhhhHHHHhccCCE
Confidence 4478999999999887 7866899999997 699999999999888876421 22211 125
Q ss_pred EEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccC-----
Q 009957 223 VGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLAN----- 297 (521)
Q Consensus 223 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~n----- 297 (521)
|+++|+||||+|+|++|+++|++|+||||++ +++.|+.+|+.+||+|+.++++++++.+.+++++++.++++++
T Consensus 119 vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~-~~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~v~~~~~~ 197 (399)
T PRK08206 119 FATATDGNHGRGVAWAAQQLGQKAVIYMPKG-SSEERVDAIRALGAECIITDGNYDDSVRLAAQEAQENGWVVVQDTAWE 197 (399)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHHcCCEEecCcccc
Confidence 8999999999999999999999999999997 7889999999999999999999999999999998888887775
Q ss_pred CC---ChHhHhhHHHHHHHHHHhcCCC--CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHH
Q 009957 298 SL---NSLRLEGQKTAAVEILQQFDWE--VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLY 372 (521)
Q Consensus 298 s~---Np~~i~G~~T~a~EI~eQl~~~--~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~ 372 (521)
++ ++..++||+|+++||++|+++. .||+||||+|+||+++|++++|+++.. ++.+|||+|||+++++++++
T Consensus 198 ~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~----~~~~kii~Vep~gs~~l~~s 273 (399)
T PRK08206 198 GYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYG----EQRPHFVVVEPDQADCLYQS 273 (399)
T ss_pred CcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcC----CCCCEEEEECCCCCchHHHH
Confidence 23 3778999999999999999852 599999999999999999999986531 25789999999999999999
Q ss_pred HhhCCcceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHH-----hcCCeeccchHHHHHH
Q 009957 373 YKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQAD-----STGMFICPHTGVALTA 447 (521)
Q Consensus 373 ~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l~-----~eGi~~ePssA~alAa 447 (521)
++.|.....+ ....|+++++.++.|... .+..+++..+.++.|+|+|+++++++|. ++|+++||++|+++||
T Consensus 274 ~~~g~~~~~~-~~~~tia~gl~~~~~~~~--~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa 350 (399)
T PRK08206 274 AVDGKPVAVT-GDMDTIMAGLACGEPNPL--AWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGA 350 (399)
T ss_pred HHcCCcEEeC-CCCCceeccCCCCCcCHH--HHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHH
Confidence 9988532222 123689999988887753 4566788899999999999999999974 6899999999999999
Q ss_pred HHHHHhc---------CCCCCCCeEEEEeCCCCCCchHHHHhh
Q 009957 448 LIKLRNS---------GVIGPLDRTVVVSTAHGLKFTQSKIDY 481 (521)
Q Consensus 448 ~~~l~~~---------g~i~~~~~vV~v~TG~g~K~~~~~~~~ 481 (521)
++++.++ +.+.++++||+++|| |.|+++.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~i~~~~~Vv~iltg-G~~d~~~~~~~ 392 (399)
T PRK08206 351 LAALMTDPDYQELREKLGLDEDSRVLLISTE-GDTDPDRYREI 392 (399)
T ss_pred HHHHHhcchhhHHHHhcCCCCCCEEEEEECC-CCCCHHHHHHH
Confidence 9876533 778889999999995 78888776443
No 23
>PLN02970 serine racemase
Probab=100.00 E-value=2.3e-50 Score=416.68 Aligned_cols=294 Identities=18% Similarity=0.185 Sum_probs=251.1
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.|+|||++++++++. +|. +||+|+|++|||||||||++.+++..+.+. .+ .++|+++||||+|.|+|++|+.+|
T Consensus 25 i~~TPL~~~~~l~~~-~g~-~i~~K~E~~nptGSfKdRga~~~i~~~~~~--~~--~~~vv~aSsGN~g~alA~~a~~~G 98 (328)
T PLN02970 25 IHRTPVLTSSSLDAL-AGR-SLFFKCECFQKGGAFKFRGACNAIFSLSDD--QA--EKGVVTHSSGNHAAALALAAKLRG 98 (328)
T ss_pred CCCCCeeechhhHHh-hCC-eEEEEecCCCCCCCcHHHHHHHHHHHhhHh--hc--CCeEEEECCcHHHHHHHHHHHHcC
Confidence 388999999998876 675 899999999999999999999999876422 12 356999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||||++ .++.|+.+|+.+||+|+.++++++++.+.+++++++.+++++|++ |+..++|++|+++||++|++ .
T Consensus 99 ~~~~ivvp~~-~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~la~~~g~~~~~~~~n~~~~~g~~t~g~Ei~~ql~--~ 175 (328)
T PLN02970 99 IPAYIVVPKN-APACKVDAVIRYGGIITWCEPTVESREAVAARVQQETGAVLIHPYNDGRVISGQGTIALEFLEQVP--E 175 (328)
T ss_pred CCEEEEECCC-CCHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhhehHHHHHHHHHhcc--C
Confidence 9999999997 789999999999999999999999999999999988888999987 68889999999999999997 5
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|++++|++. ++.+|||+|||+++++++.+++.|. ....+...|+++++.+. +. .
T Consensus 176 ~D~vv~~vG~GG~~~Gi~~~lk~~------~~~~kvi~Vep~~~~~~~~s~~~g~--~~~~~~~~tia~gl~~~-~~--~ 244 (328)
T PLN02970 176 LDVIIVPISGGGLISGIALAAKAI------KPSIKIIAAEPKGADDAAQSKAAGE--IITLPVTNTIADGLRAS-LG--D 244 (328)
T ss_pred CCEEEEeeCchHHHHHHHHHHHhc------CCCCEEEEEEECCCcHHHHHHHcCC--ceeCCCCCCccccccCC-cC--H
Confidence 999999999999999999998862 4789999999999999999998885 33344567899999875 32 2
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHH-HHhcCCCCC-CCeEEEEeCCCCCCchHHH
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIK-LRNSGVIGP-LDRTVVVSTAHGLKFTQSK 478 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~-l~~~g~i~~-~~~vV~v~TG~g~K~~~~~ 478 (521)
..+..+++..+.++.|+|+|+++++++| +++|+++||++|+++|++++ +.+.+.+.+ +++||+++||++. +...+
T Consensus 245 ~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~Ggn~-~~~~~ 322 (328)
T PLN02970 245 LTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSGGNV-DLGVL 322 (328)
T ss_pred HHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECCCCC-CHHHH
Confidence 3345567788899999999999999997 78999999999999999765 344443333 4799999999655 34443
No 24
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.8e-50 Score=435.30 Aligned_cols=293 Identities=18% Similarity=0.209 Sum_probs=259.0
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.+.|||+++++|++. +|. +||+|+|++||||||||||+.+++..+.... . .++|+++|+||||+++|++|+++|
T Consensus 35 v~~TPL~~~~~Ls~~-~g~-~IylK~E~lqptGSfK~RGA~n~i~~l~~~~--~--~~GVV~aSaGNha~gvA~aA~~lG 108 (521)
T PRK12483 35 ARETPLQRAPNLSAR-LGN-QVLLKREDLQPVFSFKIRGAYNKMARLPAEQ--L--ARGVITASAGNHAQGVALAAARLG 108 (521)
T ss_pred cCCCCeeEchhhhHh-hCC-EEEEEEcCCCCCCchHHHHHHHHHHHhHHHH--h--cCcEEEECCCHHHHHHHHHHHHhC
Confidence 478999999999887 675 8999999999999999999999998764321 1 245899999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||||.+ ++..|+.+++.|||+|+.++++||++.+.+++++++.+++++|++ ||..++||+|+|+||++|+++ .
T Consensus 109 i~~~IvmP~~-tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~la~e~g~~~v~pfdd~~viaGqgTig~EI~eQ~~~-~ 186 (521)
T PRK12483 109 VKAVIVMPRT-TPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVPPFDDPDVIAGQGTVAMEILRQHPG-P 186 (521)
T ss_pred CCEEEEECCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCeeeCCCCChHHHHHHHHHHHHHHHHhCC-C
Confidence 9999999998 789999999999999999999999999999999999999999987 799999999999999999985 5
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||||+|+||+++|++.+||++ +|.+|||||||++++++..+++.|.. ...+...|+++|+.+..+..
T Consensus 187 ~D~VvvpvGgGGliaGia~~~K~~------~p~vkVIGVep~~a~~~~~sl~~g~~--~~~~~~~t~adGiav~~~g~-- 256 (521)
T PRK12483 187 LDAIFVPVGGGGLIAGIAAYVKYV------RPEIKVIGVEPDDSNCLQAALAAGER--VVLGQVGLFADGVAVAQIGE-- 256 (521)
T ss_pred CCEEEEecCccHHHHHHHHHHHHh------CCCCEEEEEEeCCCchhhHHHhcCCc--ccCCCCCceeceeccCCCCH--
Confidence 999999999999999999988753 36789999999999999999998853 33455679999998877643
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
..+..++++.+.++.|+|+|+.+|+++| +++|+++||++|+++||++++.+++.+ ++++||+|+||++..+.
T Consensus 257 ~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~-~g~~VV~IlsGgNid~~ 329 (521)
T PRK12483 257 HTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGI-EGQTLVAIDSGANVNFD 329 (521)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCCCCHH
Confidence 3566778889999999999999999987 889999999999999999998776655 58899999999988753
No 25
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=3.3e-50 Score=415.86 Aligned_cols=295 Identities=19% Similarity=0.223 Sum_probs=254.0
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.++|||++++++++. +|. +||+|+|++|||||||||++.+++..+.+. .+ ..+|+++||||+|.|+|++|+..|
T Consensus 25 i~~TPlv~~~~l~~~-~g~-~i~~K~E~~nptGS~KdR~a~~~i~~~~~~--~~--~~~vv~~SsGN~g~alA~~aa~~G 98 (333)
T PRK08638 25 IRKTPLPRSNYLSER-CKG-EIFLKLENMQRTGSFKIRGAFNKLSSLTDA--EK--RKGVVACSAGNHAQGVALSCALLG 98 (333)
T ss_pred CcCCCceechhhHHh-hCC-eEEEEeccCCccCCcHHHHHHHHHHhccHH--hc--CCeEEEeCCcHHHHHHHHHHHHcC
Confidence 489999999998876 665 899999999999999999999999876432 12 247999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||||++ .++.|+.+++.+||+|+.++++++++.+.+++++++.+++++|++ ||.+++|++|+++||++|++ .
T Consensus 99 ~~~~iv~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~~~~~~g~~t~a~Ei~~q~~--~ 175 (333)
T PRK08638 99 IDGKVVMPKG-APKSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEGRTFIPPYDDPKVIAGQGTIGLEILEDLW--D 175 (333)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEEcCcCCCcchhccccHHHHHHHhhcC--C
Confidence 9999999997 789999999999999999999999999999999998888889987 78999999999999999995 5
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|++++|+++ ++.+|||+|||++++++++++..|.. .......|+++++.+..|.++.
T Consensus 176 ~d~vv~~vG~Gg~~~Gv~~~lk~~------~~~~~vigVep~g~~~~~~s~~~g~~--~~~~~~~ti~~gl~~~~p~~~~ 247 (333)
T PRK08638 176 VDTVIVPIGGGGLIAGIAVALKSI------NPTIHIIGVQSENVHGMAASFYAGEI--TTHRTTGTLADGCDVSRPGNLT 247 (333)
T ss_pred CCEEEEEeChhHHHHHHHHHHHHh------CCCCEEEEEEECCCchHHHHHHCCCc--ccCCCCCCeeccccCCCccHHH
Confidence 899999999999999999999864 26789999999999999999988853 2233456889999888888754
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHH
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKI 479 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~ 479 (521)
+..+++..+.++.|+|+|+++++++| +++|+++||++|+++|++......+.+ ++++||+++|| |..+.+.+.
T Consensus 248 --~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~-~~~~vv~v~~G-gn~~~~~~~ 321 (333)
T PRK08638 248 --YEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYI-QNKKVVAIISG-GNVDLSRVS 321 (333)
T ss_pred --HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCccccc-CCCcEEEEECC-CCCCHHHHH
Confidence 45567889999999999999999986 789999999999999988754332222 57899999998 555666653
No 26
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=6.9e-50 Score=422.71 Aligned_cols=295 Identities=19% Similarity=0.237 Sum_probs=253.7
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.++|||+++++|+.. +|. +||+|+|++|||||||||++.+++..+.... + .++|+++|+||||.++|++|+++|
T Consensus 18 i~~TPl~~~~~Ls~~-~g~-~iylK~E~lqptGSfK~RgA~n~i~~l~~~~--~--~~gVV~aSaGNhg~avA~aa~~~G 91 (403)
T PRK08526 18 VNKTPFAYAPFLSKI-SGA-EVYLKKENLQITGAYKIRGAYNKIANLSEEQ--K--QHGVIAASAGNHAQGVAISAKKFG 91 (403)
T ss_pred CCCCCccchHHHHHH-hCC-eEEEEecCCCCCCCCHHHHHHHHHHhccHhh--c--CCEEEEECccHHHHHHHHHHHHcC
Confidence 488999999999876 675 8999999999999999999999998765321 1 356899999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+|+||++ ++..|+.+++.|||+|+.++++++++.+.+++++++.+++++|++ ||..++||+|+|+||++|++ .
T Consensus 92 i~~~IvmP~~-~p~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~~a~~~g~~~v~p~~~~~~i~G~gtia~EI~eq~~--~ 168 (403)
T PRK08526 92 IKAVIVMPEA-TPLLKVSGTKALGAEVILKGDNYDEAYAFALEYAKENNLTFIHPFEDEEVMAGQGTIALEMLDEIS--D 168 (403)
T ss_pred CCEEEEEcCC-CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEeeCCCCCHHHHhhhHHHHHHHHHhcC--C
Confidence 9999999998 688999999999999999999999999999999999999999987 68899999999999999997 6
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|++++|+++ +|.+|||+|||+++++++.+++.|.. .......|+++|+.+..|...
T Consensus 169 ~D~vvvpvGgGGl~aGia~~~k~~------~p~~kvigVep~~~~~~~~s~~~g~~--~~~~~~~tiadgiav~~~~~~- 239 (403)
T PRK08526 169 LDMVVVPVGGGGLISGIASAAKQI------NPNIKIIGVGAKGAPAMYESFHAKKI--INSKSVRTIADGIAVRDASPI- 239 (403)
T ss_pred CCEEEEecChHHHHHHHHHHHHHh------CCCCEEEEEEECCCChHHHHHHcCCc--ccCCCCCceeccccCCCCCHH-
Confidence 999999999999999999998864 36789999999999999999988852 234556799999988765432
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHh
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~ 480 (521)
.+..+++..+.++.|+|+|+.+|+++| +++|+++||++|+++||+++. .+.+.++++||+++||++ .+.+.+.+
T Consensus 240 -~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~--~~~~~~~~~Vv~ilsGGn-id~~~~~~ 314 (403)
T PRK08526 240 -NLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQ--KIDLKKGKKIGVVLSGGN-IDVQMLNI 314 (403)
T ss_pred -HHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhC--ccccccCCeEEEEECCCC-CCHHHHHH
Confidence 334455667789999999999999986 889999999999999998752 333456889999999954 45665544
No 27
>PLN02550 threonine dehydratase
Probab=100.00 E-value=5.2e-50 Score=435.74 Aligned_cols=293 Identities=16% Similarity=0.203 Sum_probs=260.4
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
..+.|||+++++|+.. +|. +||+|+|++||||||||||+.+++..+... . ..++|+++|+||||+++|++|+++
T Consensus 106 ~i~~TPL~~s~~LS~~-~g~-~IylK~E~lqptGSFK~RGA~n~I~~L~~e--~--~~~GVV~aSaGNhAqgvA~aA~~l 179 (591)
T PLN02550 106 VAIESPLQLAKKLSER-LGV-KVLLKREDLQPVFSFKLRGAYNMMAKLPKE--Q--LDKGVICSSAGNHAQGVALSAQRL 179 (591)
T ss_pred cccCChhhhhHHhhHh-hCC-EEEEEEcCCCCCCcHHHHHHHHHHHHHHHh--c--CCCCEEEECCCHHHHHHHHHHHHc
Confidence 3578999999999887 775 899999999999999999999999887432 1 234689999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCC
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWE 321 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 321 (521)
|++|+||||++ ++..|+.+++.|||+|+.++++|+++.+.+++++++.++++++++ ||..++||+|+|+||++|+++
T Consensus 180 Gika~IvmP~~-tp~~Kv~~~r~~GAeVvl~g~~~dea~~~A~~la~e~g~~fi~pfddp~viaGqgTig~EI~eQl~~- 257 (591)
T PLN02550 180 GCDAVIAMPVT-TPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEGRTFIPPFDHPDVIAGQGTVGMEIVRQHQG- 257 (591)
T ss_pred CCCEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEECCCCChHHHHHHHHHHHHHHHHcCC-
Confidence 99999999997 788999999999999999999999999999999999898888987 899999999999999999984
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccH
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSI 401 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 401 (521)
.+|+||||+|+||+++|++.+||++ +|.+||||||+++++++..+++.|.. ...+...|+++|+.+..+.
T Consensus 258 ~~D~VvvpVGgGGLiaGia~~lK~l------~p~vkVIGVEp~~a~~~~~s~~~G~~--v~~~~~~tiAdGiav~~~G-- 327 (591)
T PLN02550 258 PLHAIFVPVGGGGLIAGIAAYVKRV------RPEVKIIGVEPSDANAMALSLHHGER--VMLDQVGGFADGVAVKEVG-- 327 (591)
T ss_pred CCCEEEEEeChhHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHhcCCc--cccCCCCCccceeecCCCC--
Confidence 5899999999999999999998864 37889999999999999999999852 2334567999999987765
Q ss_pred HHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCc
Q 009957 402 DRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKF 474 (521)
Q Consensus 402 ~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~ 474 (521)
...+..++++.|.++.|+|+||.+|++++ +++|+++||++|+++||++++.+++.+ ++++||+++||++..+
T Consensus 328 ~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~-~g~~Vv~vlsGgNid~ 400 (591)
T PLN02550 328 EETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGL-KDENVVAITSGANMNF 400 (591)
T ss_pred HHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCC-CCCeEEEEecCCCCCH
Confidence 44677789999999999999999999986 889999999999999999998876655 6789999999998874
No 28
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=8.6e-50 Score=411.61 Aligned_cols=293 Identities=19% Similarity=0.203 Sum_probs=249.7
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.|+|||+++++++.. +|. +||+|+|++|||||||||++.+++..+.+. +.+ ++|+++||||||.|+|++|+++|
T Consensus 17 i~~TPl~~~~~l~~~-~g~-~l~~K~E~~nptGS~K~R~a~~~i~~a~~~---~~~-~gvv~aSsGN~g~alA~~a~~~G 90 (322)
T PRK07476 17 VRRTPLVASASLSAR-AGV-PVWLKLETLQPTGSFKLRGATNALLSLSAQ---ERA-RGVVTASTGNHGRALAYAARALG 90 (322)
T ss_pred CCCCCceechhhHHh-hCC-eEEEEEccCCCCCCchHHHHHHHHHhhhhh---hhC-CeEEEECCChHHHHHHHHHHHhC
Confidence 488999999998876 665 899999999999999999999999987543 222 35899999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||+|++ +++.|+.+|+.+||+|+.++++++++.+.+++++++.++++++++ ||.+++|++|+++||++|++ .
T Consensus 91 ~~~~i~vp~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~~~Ei~~Q~~--~ 167 (322)
T PRK07476 91 IRATICMSRL-VPANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGLTMVPPFDDPRIIAGQGTIGLEILEALP--D 167 (322)
T ss_pred CCEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcceeechhHHHHHHHHhCc--C
Confidence 9999999997 788999999999999999999999999999999888888888876 89999999999999999997 5
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
+|+||+|+|+||+++|++++|+++ ++.+|||+||++++++++.++..|. ....+...|+++++..+.+....
T Consensus 168 ~d~iv~~vG~GG~~~Gv~~~~k~~------~~~~~vigVe~~~~~~~~~s~~~g~--~~~~~~~~t~a~~l~~~~~~~~~ 239 (322)
T PRK07476 168 VATVLVPLSGGGLASGVAAAVKAI------RPAIRVIGVSMERGAAMHASLAAGR--PVQVEEVPTLADSLGGGIGLDNR 239 (322)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHh------CCCCEEEEEEECCchHHHHHHHcCC--ceeCCCCCCccccccccccCCcH
Confidence 899999999999999999999863 3678999999999999999999885 23334567889888543322122
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCC-CeEEEEeCCCCCCchHHH
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPL-DRTVVVSTAHGLKFTQSK 478 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~-~~vV~v~TG~g~K~~~~~ 478 (521)
..+..++...+.++.|+|+|+++++++| +++|+++||++|+++|++++ +.+.++ ++||+++||++.. ++.+
T Consensus 240 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~----~~~~~~~~~Vvvi~tGg~~~-~~~~ 312 (322)
T PRK07476 240 YTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLA----GKIAARDGPIVVVVSGANID-MELH 312 (322)
T ss_pred HHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHh----CCcccCCCcEEEEECCCCCC-HHHH
Confidence 2345566778899999999999999987 78999999999999999873 334444 8999999999885 4444
No 29
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=9.6e-50 Score=423.18 Aligned_cols=295 Identities=19% Similarity=0.243 Sum_probs=253.6
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
..++|||+++++|+.. +|. +||+|+|++|||||||||++.+++..+.+. +. ..+|+++||||||.|+|++|+++
T Consensus 22 ~i~~TPl~~~~~ls~~-~g~-~v~~K~E~~nptGSfK~Rga~~~i~~~~~~---~~-~~gvv~aSsGN~g~a~A~aa~~~ 95 (406)
T PRK06382 22 YLNRTPLIHSTTFGDE-YGG-DIYFKLENFQKTGSFKSRGAVFKFSKLSED---EL-RNGVITASAGNHAQGVAYAASIN 95 (406)
T ss_pred cCCCCCeeEhhhhHHH-hCC-EEEEEecCCCCCCCCHHHHHHHHHHhcchh---cc-CCeEEEECCCHHHHHHHHHHHHc
Confidence 3589999999998876 675 899999999999999999999998776432 11 24689999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCC
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWE 321 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 321 (521)
|++|+||||++ .+..|+.+++.+||+|+.++++++++.+.+++++++.+++++|++ ||.+++||+|+++||++|++
T Consensus 96 G~~~~ivmp~~-~~~~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~la~~~~~~~v~~~~~~~~i~g~~t~~~Ei~eq~~-- 172 (406)
T PRK06382 96 GIDAKIVMPEY-TIPQKVNAVEAYGAHVILTGRDYDEAHRYADKIAMDENRTFIEAFNDRWVISGQGTIGLEIMEDLP-- 172 (406)
T ss_pred CCCEEEEEcCC-CHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEecCccCChHHHHHHHHHHHHHHHhcC--
Confidence 99999999997 688999999999999999999999999999999998899999987 68999999999999999998
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccH
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSI 401 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 401 (521)
.||+||+|+|+||+++|++++|+++ +|.+|||+|||++++++++++..|. ..+.....|+++|+.++.|...
T Consensus 173 ~~d~vvvpvG~GG~~~Gv~~~~k~~------~p~~~vigVe~~~~~~~~~~~~~~~--~~~~~~~~t~a~gl~~~~~~~~ 244 (406)
T PRK06382 173 DLDQIIVPVGGGGLISGIALAAKHI------NPNVKIIGIESELSDSMKASLREGK--IVAHTSGVSICDGISVKYPGDL 244 (406)
T ss_pred CCCEEEEeeChHHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHHcCC--ceecCCCCCccccccCCCccHH
Confidence 6999999999999999999998763 4788999999999999999998885 3334456799999999887654
Q ss_pred HHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHh
Q 009957 402 DRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480 (521)
Q Consensus 402 ~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~ 480 (521)
.+.+++++.+.++.|+|+|+++|+++| +++|+++||++|+++||++..... .++++||+++||+ ..+...+.+
T Consensus 245 --~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~~~---~~~~~Vv~i~sGG-n~d~~~~~~ 318 (406)
T PRK06382 245 --TFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKVD---VKGKKVAIVVSGG-NINPLLMSK 318 (406)
T ss_pred --HHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhcccc---CCCCEEEEEeCCC-CCCHHHHHH
Confidence 345678899999999999999999986 889999999999999987643211 2567999999995 544554433
No 30
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=8e-50 Score=411.76 Aligned_cols=293 Identities=17% Similarity=0.161 Sum_probs=252.7
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
..++|||++++++.+. .|. +||+|+|++|||||||||++.+++..+... .+ ..+|+++|+||||.|+|++|+.+
T Consensus 21 ~~~~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~i~~~~~~--~~--~~~vv~aSsGN~g~alA~~a~~~ 94 (321)
T PRK07048 21 VAHRTPVLTSRTADAR-TGA-QVFFKCENFQRMGAFKFRGAYNALSQFSPE--QR--RAGVVTFSSGNHAQAIALSARLL 94 (321)
T ss_pred CCCCCCCccchhhHHh-cCC-eEEEEeccCCCCCCeeHHHHHHHHHhhhHh--hc--CCcEEEeCCCHHHHHHHHHHHHc
Confidence 3578999999998765 564 899999999999999999999999876531 12 35699999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCC
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWE 321 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 321 (521)
|++|+|+||.+ .++.|+.+|+.+||+|+.++++++++.+.+++++++.++++++++ |+.+++||+|+++||++|++
T Consensus 95 G~~~~vvvp~~-~~~~k~~~~~~~GAeV~~~~~~~~~~~~~a~~l~~~~g~~~~~~~~~~~~~~g~~t~~~EI~~q~~-- 171 (321)
T PRK07048 95 GIPATIVMPQD-APAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPPYDHPHVIAGQGTAAKELFEEVG-- 171 (321)
T ss_pred CCCEEEEECCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECCCCCcchhhccchHHHHHHhhcC--
Confidence 99999999997 789999999999999999999999999999999999899898987 78899999999999999997
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccH
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSI 401 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 401 (521)
.||+||+|+|+||+++|++++|+++ ++.+|||+|||++++++++++..|. ........|+++++.+..+.
T Consensus 172 ~~D~vv~~vGtGG~~~Gi~~~~k~~------~~~~~vigvep~~~~~~~~s~~~g~--~~~~~~~~tia~g~~~~~~~-- 241 (321)
T PRK07048 172 PLDALFVCLGGGGLLSGCALAARAL------SPGCKVYGVEPEAGNDGQQSFRSGE--IVHIDTPRTIADGAQTQHLG-- 241 (321)
T ss_pred CCCEEEEecChhHHHHHHHHHHHHh------CCCCEEEEEeeCCChhHHHHHHcCC--cccCCCCCCcccccccCCcc--
Confidence 7999999999999999999998764 3678999999999999999998884 33444567899988764333
Q ss_pred HHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHH
Q 009957 402 DRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSK 478 (521)
Q Consensus 402 ~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~ 478 (521)
...+..+++..+.++.|+|+|+++++++| +++|+++||++|+++++++++.+. .++++||+++||+ ..+.+.+
T Consensus 242 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~---~~~~~vv~i~tGG-n~~~~~~ 315 (321)
T PRK07048 242 NYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP---LKGKRVGVIISGG-NVDLARF 315 (321)
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh---cCCCeEEEEeCCC-CCCHHHH
Confidence 33456667888899999999999999997 789999999999999999987654 2578999999995 4455554
No 31
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.9e-49 Score=415.69 Aligned_cols=305 Identities=17% Similarity=0.193 Sum_probs=255.9
Q ss_pred cCCccccccccccccCCCCcEEEecCCCC-CCCChhHHHHHHHHHHHHHHH----------------hc--CCCceEEEE
Q 009957 165 GNSNLFWAERFGKQFLGMNDLWVKHCGIS-HTGSFKDLGMTVLVSQVNRLR----------------KM--KRPVVGVGC 225 (521)
Q Consensus 165 G~TPL~~~~~l~~~~lg~~~l~vK~E~~n-PTGSfKDRga~~~v~~a~~~~----------------~~--g~~~~~Vv~ 225 (521)
-.|||++++++.+. +|+.+||+|+|++| |||||||||+.+.+..+.... +. +.+..+|++
T Consensus 21 ~~TPL~~~~~l~~~-~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 99 (376)
T TIGR01747 21 RPTPLCALDHLANL-LGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFAT 99 (376)
T ss_pred CCCCCcchHHHHHH-hCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEE
Confidence 56999999999887 78778999999997 599999999999988763310 10 011357999
Q ss_pred eCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCC-------
Q 009957 226 ASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANS------- 298 (521)
Q Consensus 226 aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns------- 298 (521)
+|+||||+|+|++|+.+|++|+||||++ +++.|+.+|+.+||+|+.++++++++.+.+++++++.++++++.
T Consensus 100 aSsGN~g~a~A~~Aa~~G~~~~I~vP~~-~~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~~~~~g~~~~~~~~~~~~~ 178 (376)
T TIGR01747 100 ATDGNHGRGVAWAAQQLGQKAVVYMPKG-SAQERVENILNLGAECTITDMNYDDTVRLAMQMAQQHGWVVVQDTAWEGYE 178 (376)
T ss_pred ECccHHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCcEEeccccccccc
Confidence 9999999999999999999999999997 78999999999999999999999999999999988888887762
Q ss_pred -CChHhHhhHHHHHHHHHHhcC---CCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHh
Q 009957 299 -LNSLRLEGQKTAAVEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYK 374 (521)
Q Consensus 299 -~Np~~i~G~~T~a~EI~eQl~---~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~ 374 (521)
.+|++++||+|+++||++|++ |..||+||+|+|+||++.|++++|+++.. +..|+||+|||++++++++++.
T Consensus 179 ~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~----~~~p~vi~Vep~ga~~~~~s~~ 254 (376)
T TIGR01747 179 KIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYS----ENNPHSIVVEPDKADCLYQSAV 254 (376)
T ss_pred cCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcC----CCCCEEEEEeeCCCCHHHHHHH
Confidence 347889999999999999996 34799999999999999999998875422 2467999999999999999997
Q ss_pred hCCcceeeccc-ccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-Hhc----CCeeccchHHHHHHH
Q 009957 375 SGWKDFKAVKA-STTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DST----GMFICPHTGVALTAL 448 (521)
Q Consensus 375 ~G~~~~~~~~~-~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~e----Gi~~ePssA~alAa~ 448 (521)
.+.....+.+. ..|+++||.++.|... .+.+++++.+.++.|+|+|+.+||++| +.. ++++||++|+++|++
T Consensus 255 ~~~g~~~~~~~~~~Tiadgl~~~~~~~~--~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l 332 (376)
T TIGR01747 255 KKDGDIVNVGGDMATIMAGLACGEPNPI--SWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLL 332 (376)
T ss_pred hcCCCeEEcCCCccccccccccCCcchH--HHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHH
Confidence 72223555553 5799999999888543 347788999999999999999999997 544 599999999999887
Q ss_pred H---------HHHhcCCCCCCCeEEEEeCCCCCCchHHH
Q 009957 449 I---------KLRNSGVIGPLDRTVVVSTAHGLKFTQSK 478 (521)
Q Consensus 449 ~---------~l~~~g~i~~~~~vV~v~TG~g~K~~~~~ 478 (521)
. ++++++.+.++++||+++||++. +++.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~gn~-d~~~~ 370 (376)
T TIGR01747 333 AAVMYHPQYQSLMEKLQLDKDAVVLVISTEGDT-DPDHY 370 (376)
T ss_pred HHHHhCchHHHHHHHcCCCCCCEEEEEeCCCCC-CHHHH
Confidence 7 55667778888999999999644 46554
No 32
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-49 Score=412.18 Aligned_cols=279 Identities=20% Similarity=0.236 Sum_probs=240.5
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.+.|||++++.+ +||+|+|++|||||||||++.+++..+.+ .+. .+.|+++||||||.|+|++|+.+|
T Consensus 37 i~~TPL~~~~~l--------~v~lK~E~~nptGSfK~RgA~~~l~~a~~---~~~-~~~VV~aSsGN~G~alA~aa~~~G 104 (349)
T PRK08813 37 LSPTPLHYAERF--------GVWLKLENLQRTGSYKVRGALNALLAGLE---RGD-ERPVICASAGNHAQGVAWSAYRLG 104 (349)
T ss_pred CCCCCeEECCCC--------cEEEEecCCCCcCCCHHHHHHHHHHHHHH---cCC-CCeEEEECCCHHHHHHHHHHHHcC
Confidence 378999987643 49999999999999999999999987754 232 246999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||||.+ .+..|+.+++.|||+|+.++++|+++.+.+++++++.+++++|++ ||.+++||+|+|+||++| .
T Consensus 105 i~~~IvvP~~-~~~~K~~~i~~~GAeVv~~g~~~~~a~~~a~~la~~~g~~~v~~~~np~~i~G~~Tig~EI~e~----~ 179 (349)
T PRK08813 105 VQAITVMPHG-APQTKIAGVAHWGATVRQHGNSYDEAYAFARELADQNGYRFLSAFDDPDVIAGQGTVGIELAAH----A 179 (349)
T ss_pred CCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCccCChHHHHHHHHHHHHHHcC----C
Confidence 9999999997 789999999999999999999999999999999998999999986 899999999999999987 4
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|++++||+ +.+|||+||+++++++++++. |. ....+...|+++|+.+..|....
T Consensus 180 pD~VvvpvGgGGliaGia~~lk~--------~~~rVigVqpega~~~~~s~~-g~--~~~~~~~~tiadgl~~~~p~~~~ 248 (349)
T PRK08813 180 PDVVIVPIGGGGLASGVALALKS--------QGVRVVGAQVEGVDSMARAIR-GD--LREIAPVATLADGVKVKIPGFLT 248 (349)
T ss_pred CCEEEEEeCccHHHHHHHHHHhc--------CCCEEEEEEECCCchHHHHHc-CC--CcccCCCCceecccccCCcchhH
Confidence 89999999999999999998873 246999999999999999997 53 22233457999999988776543
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHh
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~ 480 (521)
+.++++..+.++.|+|+|+.+|+++| +++|+++||++|+++||++++ ++++|++|+||++.. .+.+.+
T Consensus 249 --~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~-------~~~~v~~vlsGgN~d-~~~~~~ 317 (349)
T PRK08813 249 --RRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV-------SGKRKCAVVSGGNID-ATVLAT 317 (349)
T ss_pred --HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh-------CCCCEEEEECCCCCC-HHHHHH
Confidence 44556788899999999999999987 789999999999999998763 356899999998875 444433
No 33
>PLN02565 cysteine synthase
Probab=100.00 E-value=2e-49 Score=408.34 Aligned_cols=292 Identities=18% Similarity=0.158 Sum_probs=239.2
Q ss_pred hcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHH
Q 009957 160 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYC 239 (521)
Q Consensus 160 vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~a 239 (521)
++..+|+|||++++.+... .|. +||+|+|++|||||||||++.+++..+.+.....++.+.|+++||||||.|+|++|
T Consensus 9 ~~~~ig~TPLv~l~~l~~~-~~~-~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a 86 (322)
T PLN02565 9 VTELIGKTPLVYLNNVVDG-CVA-RIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMA 86 (322)
T ss_pred HHHHhCCCceEEccccCCC-CCc-eEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHH
Confidence 3567899999998876543 333 89999999999999999999999988754322222335699999999999999999
Q ss_pred HhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC--CHHHHHHHHHHHHhcC-CccccCCC-ChHh-HhhHHHHHHHH
Q 009957 240 ASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT--DFDGCMKLIREVTSEL-PIYLANSL-NSLR-LEGQKTAAVEI 314 (521)
Q Consensus 240 a~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~~dd~~~~~~~~~~~~-~~~~~ns~-Np~~-i~G~~T~a~EI 314 (521)
+.+|++|+||||++ ++..|+.+|+.+||+|+.++. +++++.+.+++++++. ++|++|++ ||.+ ..||+|+|+||
T Consensus 87 ~~~G~~~~ivvp~~-~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei 165 (322)
T PLN02565 87 AAKGYKLIITMPAS-MSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI 165 (322)
T ss_pred HHcCCeEEEEeCCC-CcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence 99999999999997 799999999999999999986 4578888899988775 78888887 6644 46899999999
Q ss_pred HHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhc
Q 009957 315 LQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQ 394 (521)
Q Consensus 315 ~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~ 394 (521)
++|+++ .||+||+|+|+||+++|++++|+++ .+.+|||+|||++++++. .|. + .....++|.
T Consensus 166 ~~q~~~-~~d~vv~~vG~GG~l~Gi~~~lk~~------~p~~kvi~Vep~~s~~~~----~g~----~---~~~~~~glg 227 (322)
T PLN02565 166 WKGTGG-KVDAFVSGIGTGGTITGAGKYLKEQ------NPDIKLYGVEPVESAVLS----GGK----P---GPHKIQGIG 227 (322)
T ss_pred HHhcCC-CCCEEEEcCCchHHHHHHHHHHHHh------CCCCEEEEEecCCCcccc----CCC----C---CCccCCCCC
Confidence 999975 5999999999999999999998864 267899999999988773 232 1 122346776
Q ss_pred cCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC
Q 009957 395 IGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLK 473 (521)
Q Consensus 395 i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K 473 (521)
++.+.... .+ +..+.++.|+|+|+++++++| +++|+++||+||++++|++++.+++. .++++||+++||+|.|
T Consensus 228 ~~~~~~~~-~~----~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~-~~~~~vV~v~~d~G~k 301 (322)
T PLN02565 228 AGFIPGVL-DV----DLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPE-NAGKLIVVIFPSFGER 301 (322)
T ss_pred CCCCCCcC-CH----hHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcC-CCCCeEEEEECCCccc
Confidence 64432221 11 233568999999999999987 78999999999999999999987764 4678999999999999
Q ss_pred chHHH
Q 009957 474 FTQSK 478 (521)
Q Consensus 474 ~~~~~ 478 (521)
|.+++
T Consensus 302 y~~~~ 306 (322)
T PLN02565 302 YLSSV 306 (322)
T ss_pred cCCch
Confidence 99874
No 34
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-49 Score=407.68 Aligned_cols=290 Identities=22% Similarity=0.203 Sum_probs=250.6
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
-++|||++++++.+. +|. +||+|+|++|||||||||++.+++..+... . +.++|+++|+||+|.|+|++|+++|
T Consensus 18 i~~TPLv~~~~l~~~-~g~-~i~~K~E~~nptgS~KdR~a~~~~~~l~~~--~--~~~~vv~aSsGN~g~alA~~a~~~G 91 (317)
T PRK06815 18 VRVTPLEHSPLLSQH-TGC-EVYLKCEHLQHTGSFKFRGASNKLRLLNEA--Q--RQQGVITASSGNHGQGVALAAKLAG 91 (317)
T ss_pred CCCCCccccHhHHHh-hCC-eEEEEecCCCCCCCcHHHHHHHHHHhcchh--h--cCceEEEECCChHHHHHHHHHHHhC
Confidence 378999999998876 675 899999999999999999999888765321 1 1346899999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||+|.+ .++.|+.+|+.+||+|+.++++++++.+.+++++++.++++++++ ||..++|++|+++||++|++ .
T Consensus 92 ~~~~i~~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~--~ 168 (317)
T PRK06815 92 IPVTVYAPEQ-ASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYISPYNDPQVIAGQGTIGMELVEQQP--D 168 (317)
T ss_pred CCEEEEECCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEecCCCChhhhcchhHHHHHHHHhcC--C
Confidence 9999999997 688999999999999999999999999999999988888888876 68889999999999999998 5
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|++++|+++ ++.+|||+|||+++++++++++.|. ..+.+...|+++++..+.....
T Consensus 169 ~d~vv~~vG~Gg~~~Gi~~~~k~~------~~~~~vigVep~~~~~~~~~~~~g~--~~~~~~~~t~~~gl~~~~~~~~- 239 (317)
T PRK06815 169 LDAVFVAVGGGGLISGIATYLKTL------SPKTEIIGCWPANSPSLYTSLEAGE--IVEVAEQPTLSDGTAGGVEPGA- 239 (317)
T ss_pred CCEEEEECcHHHHHHHHHHHHHHh------CCCCEEEEEEeCCCCcHHHHHHCCC--cccCCCCCChhhhhccCCcccH-
Confidence 999999999999999999998864 2578999999999999999999885 4444456788888865532222
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCc
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKF 474 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~ 474 (521)
..+..++++.+.++.|+|+|+++++++| +++|+++||++|+++||++++.++ .++++||+++||++.|.
T Consensus 240 ~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~---~~~~~vv~i~tG~~~~~ 309 (317)
T PRK06815 240 ITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR---YQGKKVAVVLCGKNIVL 309 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh---cCCCcEEEEECCCCCCH
Confidence 2455667888999999999999999997 779999999999999999997765 25789999999999984
No 35
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=2.7e-49 Score=427.63 Aligned_cols=293 Identities=19% Similarity=0.199 Sum_probs=260.6
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.+.|||+++++|++. +|. +||+|+|++||||||||||+.+++..+... .+ .++|+++|+||||.++|++|++.|
T Consensus 15 i~~TPL~~~~~Ls~~-~g~-~i~lK~E~lqptgSfK~RgA~n~i~~l~~~--~~--~~gVV~aSaGNha~~vA~aa~~~G 88 (499)
T TIGR01124 15 AQETPLQKAAKLSER-LGN-RILIKREDLQPVFSFKLRGAYNKMAQLSPE--QK--ARGVIAASAGNHAQGVAFSAARLG 88 (499)
T ss_pred cCCCCeeehHHHHHH-hCC-EEEEEecCCCCCCCCHHHHHHHHHHHhhHH--hc--CCEEEEECCCHHHHHHHHHHHHcC
Confidence 478999999999876 675 899999999999999999999998876321 12 357999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+|+||.+ ++..|+.+++.+||+|+.++++++++.+.+++++++.++++++++ ||..++||+|+|+||++|+++ .
T Consensus 89 i~~~IvmP~~-tp~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~la~~~g~~~i~p~~~~~~i~G~gtig~EI~~q~~~-~ 166 (499)
T TIGR01124 89 LKALIVMPET-TPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQEKGLTFIHPFDDPLVIAGQGTLALEILRQVAN-P 166 (499)
T ss_pred CCEEEEECCC-CCHHHHHHHHhCCCEEEEeCcCHHHHHHHHHHHHHhcCCEeeCCCCChHHHHhhHHHHHHHHHhCCC-C
Confidence 9999999997 788999999999999999999999999999999999999999987 799999999999999999984 6
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
+|+||+|+|+||+++|++.+||++ .|.+|||+|||+++++++.+++.|. ....+...|+++|+.+..+. .
T Consensus 167 ~D~vvvpvGgGGliaGia~~lk~~------~p~~kVIgVep~~~~~~~~s~~~g~--~~~~~~~~t~adgiav~~~g--~ 236 (499)
T TIGR01124 167 LDAVFVPVGGGGLAAGVAALIKQL------MPEIKVIGVEPTDSDCMKQALDAGE--PVDLDQVGLFADGVAVKRVG--D 236 (499)
T ss_pred CCEEEEccCccHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHhcCC--ceeCCCCCCccCcccCCCcc--H
Confidence 999999999999999999988763 3678999999999999999999985 33455678999999988774 3
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
..+..++++.+.++.|+|+|+.+|++.+ +++|+++||++|+++||++++.+++.+ ++++||+|+||++..+.
T Consensus 237 ~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~-~~~~vv~i~sG~n~~~~ 309 (499)
T TIGR01124 237 ETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGI-RGQTLVAILSGANMNFH 309 (499)
T ss_pred HHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCC-CCCeEEEEECCCCCCHH
Confidence 4667788899999999999999999987 889999999999999999998877655 57899999999998754
No 36
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-49 Score=404.97 Aligned_cols=293 Identities=22% Similarity=0.286 Sum_probs=258.8
Q ss_pred cCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCC
Q 009957 165 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGI 244 (521)
Q Consensus 165 G~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi 244 (521)
-.|||.+++.|++. +|. ++|+|+|+++||||||.||+.+.++.+....+ +..+|+++|+||||+++|+.|+++|+
T Consensus 24 ~~TPL~~s~~Ls~~-~g~-~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~---~~~gViaaSaGNHaQGvA~aa~~lGi 98 (347)
T COG1171 24 NPTPLQRSPSLSER-LGA-EIYLKRENLQPVGSFKIRGAYNKLSSLSEEEE---RAAGVIAASAGNHAQGVAYAAKRLGI 98 (347)
T ss_pred cCCCcccchhhHHh-hCc-eEEEeeccCcccccchhhhHHHHHHhcChhhh---hcCceEEecCCcHHHHHHHHHHHhCC
Confidence 46899999999987 564 89999999999999999999999887643211 23579999999999999999999999
Q ss_pred CEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCCC
Q 009957 245 PSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEVP 323 (521)
Q Consensus 245 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~p 323 (521)
+++||||.+ ++..|+..++.|||+|+.++.+|||+.+.+++++++.|+.+++++ +|..+.||.|+++||++|++. .|
T Consensus 99 ~a~IvMP~~-tp~~Kv~a~r~~GaeVil~g~~~dda~~~a~~~a~~~G~~~i~pfD~p~viAGQGTi~lEileq~~~-~~ 176 (347)
T COG1171 99 KATIVMPET-TPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVPPFDDPDVIAGQGTIALEILEQLPD-LP 176 (347)
T ss_pred CEEEEecCC-CcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEEeCCCCCcceeecccHHHHHHHHhccc-cC
Confidence 999999998 799999999999999999999999999999999999999999998 578999999999999999984 47
Q ss_pred cEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHHH
Q 009957 324 DWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDR 403 (521)
Q Consensus 324 D~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~ 403 (521)
|.|+||+|+||+++|+..+++.+ .|..|||+|||++++.++++++.|. .........|++||+.+..|.+..
T Consensus 177 d~v~vpvGGGGLisGia~~~k~~------~p~~~vIGVEp~~a~~~~~Sl~~G~-~~~~~~~~~tiaDG~av~~~g~~t- 248 (347)
T COG1171 177 DAVFVPVGGGGLISGIATALKAL------SPEIKVIGVEPEGAPSMYASLKAGK-IVVVLPDVGTIADGLAVKRPGDLT- 248 (347)
T ss_pred CEEEEecCccHHHHHHHHHHHHh------CCCCeEEEEeeCCChHHHHHHHcCC-ceeecCCCCccccccccCCCCHHH-
Confidence 99999999999999999876642 3678999999999999999999994 234445578999999999988664
Q ss_pred HHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 404 AVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 404 ~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
+.++++..+.++.|+|+|+.++|+.+ +++++++||++|+++||+++...+- .++++|++++||++..+.
T Consensus 249 -f~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~--~~g~~v~~ilSGgN~d~~ 318 (347)
T COG1171 249 -FEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP--LQGKTVVVILSGGNIDFE 318 (347)
T ss_pred -HHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh--cCCCeEEEEecCCCCCHH
Confidence 56789999999999999999999986 8999999999999999999877552 356779999999877753
No 37
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=2.2e-49 Score=404.91 Aligned_cols=287 Identities=22% Similarity=0.279 Sum_probs=253.0
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.|+|||++++++.+. +|. +||+|+|++|||||||||++.+++..+.+. +. ..+|+++||||||.|+|++|++.|
T Consensus 15 ig~TPl~~~~~l~~~-~g~-~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~---~~-~~~iv~~ssGN~g~alA~~a~~~G 88 (304)
T cd01562 15 VRRTPLLTSPTLSEL-LGA-EVYLKCENLQKTGSFKIRGAYNKLLSLSEE---ER-AKGVVAASAGNHAQGVAYAAKLLG 88 (304)
T ss_pred CCCCCcccchhhHHH-hCC-eEEEEeccCCCcCCcHHHhHHHHHHhcCHh---hc-CCcEEEECCCHHHHHHHHHHHHcC
Confidence 389999999999876 676 899999999999999999999999876432 21 246899999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||+|.+ .+..|+.+|+.+||+|+.++++++++.+.+++++++.++++.+++ ||..++|++++++||++|++ .
T Consensus 89 ~~~~ivvp~~-~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~la~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~--~ 165 (304)
T cd01562 89 IPATIVMPET-APAAKVDATRAYGAEVVLYGEDFDEAEAKARELAEEEGLTFIHPFDDPDVIAGQGTIGLEILEQVP--D 165 (304)
T ss_pred CCEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhccHHHHHHHHHHhcC--C
Confidence 9999999997 688999999999999999999999999999999999888888887 78899999999999999998 3
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|++++|+++ + +.+|||+||+.++++++.+++.|.. .+.....|++.++++..|.+..
T Consensus 166 ~d~vv~~vGtGgt~~Gi~~~lk~~---~---~~~kvigv~~~~~~~~~~~~~~g~~--~~~~~~~~~~~g~~~~~~~~~~ 237 (304)
T cd01562 166 LDAVFVPVGGGGLIAGIATAVKAL---S---PNTKVIGVEPEGAPAMAQSLAAGKP--VTLPEVDTIADGLAVKRPGELT 237 (304)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHh---C---CCCEEEEEEECCCchHHHHHHcCCc--ccCCCCCcccccccCCCchHHH
Confidence 999999999999999999998864 2 5789999999999999999988853 2333447889999988777643
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCC
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGL 472 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~ 472 (521)
+.+.++..+.++.|+|+|+++++++| +++|+++||+||+++++++++.+++ ++++||+++||++.
T Consensus 238 --~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~---~~~~vv~i~tGG~~ 303 (304)
T cd01562 238 --FEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL---KGKKVVVVLSGGNI 303 (304)
T ss_pred --HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc---CCCeEEEEecCCCC
Confidence 34567788999999999999999997 7899999999999999999987764 68899999999864
No 38
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=3.9e-49 Score=418.37 Aligned_cols=298 Identities=20% Similarity=0.288 Sum_probs=255.3
Q ss_pred cccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHH
Q 009957 161 SAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA 240 (521)
Q Consensus 161 sl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 240 (521)
.-..++|||+++++|++. +|. +||+|+|++|||||||||++.+++..+... +...+|+++|+||||.++|++|+
T Consensus 11 ~~~i~~TPl~~~~~ls~~-~g~-~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~----~~~~gvv~aSsGN~g~a~A~~a~ 84 (409)
T TIGR02079 11 KEVVPHTPLQLNERLSEK-YGA-NIYLKREDLQPVRSYKIRGAYNFLKQLSDA----QLAKGVVCASAGNHAQGFAYACR 84 (409)
T ss_pred hCcCCCCCccccHHHHHH-hCC-EEEEEecCCCCCCCcHHHHHHHHHHhCCHH----hhCCEEEEECccHHHHHHHHHHH
Confidence 345689999999999876 675 899999999999999999999998764321 11346999999999999999999
Q ss_pred hcCCCEEEEccCCcCCHHhHHhHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHH
Q 009957 241 SAGIPSIVFLPANKISIAQLVQPIANGAF---VLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQ 316 (521)
Q Consensus 241 ~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~---Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~e 316 (521)
+.|++|+||||++ ++..|+.+++.|||+ |+.++++++++.+.+++++++.++++++++ ||.+++||+|+++||++
T Consensus 85 ~~G~~~~iv~p~~-~~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~g~~~~~~~~~~~~~~g~~ti~~Ei~~ 163 (409)
T TIGR02079 85 HLGVHGTVFMPAT-TPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDHGGTFIPPFDDPRIIEGQGTVAAEILD 163 (409)
T ss_pred HcCCCEEEEECCC-CCHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCHhHhhhhHHHHHHHHH
Confidence 9999999999997 789999999999996 566778999999999999998898899987 78999999999999999
Q ss_pred hcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccC
Q 009957 317 QFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIG 396 (521)
Q Consensus 317 Ql~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~ 396 (521)
|++. .||+||+|+|+||+++|++++|+++ +|.+|||+|||++++++..+++.|. ........|+++|+.+.
T Consensus 164 q~~~-~~D~vv~pvG~GG~~~Gia~~~k~~------~p~~~vigVep~~~~~~~~s~~~g~--~~~~~~~~t~a~g~~v~ 234 (409)
T TIGR02079 164 QLPE-KPDYVVVPVGGGGLISGLTTYLAGT------SPKTKIIGVEPEGAPSMKASLEAGE--VVTLDKIDNFVDGAAVK 234 (409)
T ss_pred hcCC-CCCEEEEEecHhHHHHHHHHHHHHh------CCCCEEEEEEeCCCCcHHHHHHCCC--ceecCCCCCeeccccCC
Confidence 9983 5999999999999999999999864 3688999999999999999999885 23344567999999988
Q ss_pred CCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 397 DPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 397 ~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
.|... .+..++...+.++.|+|+|+.+|+++| +++|+++||++|+++||++++.++ .++++||+++||++.. .
T Consensus 235 ~~g~~--~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~---~~~~~Vv~ilsGgn~d-~ 308 (409)
T TIGR02079 235 RVGDL--NFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE---IKGKTVVCVVSGGNND-I 308 (409)
T ss_pred CCcHH--HHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh---cCCCeEEEEECCCCCC-H
Confidence 87753 234566777889999999999999986 889999999999999999987654 2678999999997664 5
Q ss_pred HHHHh
Q 009957 476 QSKID 480 (521)
Q Consensus 476 ~~~~~ 480 (521)
+.+.+
T Consensus 309 ~~~~~ 313 (409)
T TIGR02079 309 ERTEE 313 (409)
T ss_pred HHHHH
Confidence 55544
No 39
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=4.1e-49 Score=418.52 Aligned_cols=295 Identities=19% Similarity=0.216 Sum_probs=257.2
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
..++|||+++++|+.. +|. +||+|+|++|||||||||++.+++..+.+. . +.++|+++|+||||.++|++|+++
T Consensus 19 ~i~~TPl~~~~~ls~~-~g~-~i~~K~E~~nptGS~K~R~a~~~i~~~~~~--~--~~~~vv~aSsGN~g~alA~~a~~~ 92 (404)
T PRK08198 19 VVRRTPLEYSRTLSEL-TGA-EVYLKCENLQRTGSFKIRGAYNKIASLSEE--E--RARGVVAASAGNHAQGVAYAASLL 92 (404)
T ss_pred cCCCCCceehhhHHHH-hCC-EEEEEECCCCCCCCCHHHHHHHHHHhccHh--h--cCCEEEEECCCHHHHHHHHHHHHc
Confidence 3588999999999876 665 899999999999999999999998876432 1 245799999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCC
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWE 321 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 321 (521)
|++|+||||++ .+..|+.+++.|||+|+.++++++++.+.+++++++.++++++++ ||..++||+|+|+||++|++
T Consensus 93 G~~~~iv~p~~-~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~g~~t~a~EI~~q~~-- 169 (404)
T PRK08198 93 GIKATIVMPET-APLSKVKATRSYGAEVVLHGDVYDEALAKAQELAEETGATFVHPFDDPDVIAGQGTIGLEILEDLP-- 169 (404)
T ss_pred CCCEEEEECCC-CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCCCCCccHHHHHHHHHHHHHHhCC--
Confidence 99999999997 788999999999999999999999999999999998899999987 68899999999999999997
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccH
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSI 401 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 401 (521)
.+|+||+|+|+||+++|++++||++ +|.+|||+||++++++++.+++.|. .......+|+++++.+..|...
T Consensus 170 ~~d~vv~~vG~GG~~~Gi~~~~k~~------~p~~kiigVe~~~~~~~~~~~~~g~--~~~~~~~~t~a~g~~v~~~~~~ 241 (404)
T PRK08198 170 DVDTVVVPIGGGGLISGVATAVKAL------RPEVRVIGVQAEGAPAMPESLAAGR--PVELESVDTIADGIAVKRPGDL 241 (404)
T ss_pred CCCEEEEEeCHhHHHHHHHHHHHHh------CCCCEEEEEEeCCChHHHHHHHcCC--CEecCCCCccccccccCCcCHH
Confidence 6899999999999999999998864 3678999999999999999999885 3334456799999998887644
Q ss_pred HHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHh
Q 009957 402 DRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480 (521)
Q Consensus 402 ~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~ 480 (521)
.+..+++..+.++.|+|+|+++|+++| +++|+++||++|+++||++++.+ +.++++||+++||++ .+.+.+..
T Consensus 242 --~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~---~~~~~~vv~vl~ggn-~~~~~l~~ 315 (404)
T PRK08198 242 --TFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKL---DVKGKKVVAVLSGGN-IDVLLLSR 315 (404)
T ss_pred --HHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchh---hcCCCeEEEEECCCC-CCHHHHHH
Confidence 455678889999999999999999986 88999999999999999998753 346889999999954 55555433
No 40
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=5.4e-49 Score=413.87 Aligned_cols=305 Identities=18% Similarity=0.160 Sum_probs=252.3
Q ss_pred hhcccccCCccccccccccccCC------C-CcEEEecCCCCC-CCChhHHHHHHHHHHHHH--HHhcCC---C------
Q 009957 159 IVSAFEGNSNLFWAERFGKQFLG------M-NDLWVKHCGISH-TGSFKDLGMTVLVSQVNR--LRKMKR---P------ 219 (521)
Q Consensus 159 ~vsl~eG~TPL~~~~~l~~~~lg------~-~~l~vK~E~~nP-TGSfKDRga~~~v~~a~~--~~~~g~---~------ 219 (521)
..+|++++|||+++++++.. +| . .+||+|+|++|| ||||||||+.+++..+.. ..+.|. +
T Consensus 45 ~~~~~~~~TPLv~~~~ls~~-~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~ 123 (404)
T cd06447 45 AASHGIIESPLLPIPRMKQA-LEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKL 123 (404)
T ss_pred cccCCccCCCceehHHHHHH-hccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhh
Confidence 35899999999999998875 54 1 489999999999 999999999988865321 222231 1
Q ss_pred ----------ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHh
Q 009957 220 ----------VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTS 289 (521)
Q Consensus 220 ----------~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~ 289 (521)
.++|+++||||||.|+|++|+.+|++|+||||++ +++.|+.+|+.+||+|+.++++++++.+.++++++
T Consensus 124 ~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~-~~~~K~~~ira~GAeVv~v~~~~~~a~~~a~~la~ 202 (404)
T cd06447 124 ASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSAD-AKQWKKDKLRSKGVTVVEYETDYSKAVEEGRKQAA 202 (404)
T ss_pred hhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCC-CcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
Confidence 1479999999999999999999999999999997 79999999999999999999999999999999988
Q ss_pred cC-CccccCCCC-hHhHhhHHHHHHHHHHhcCC-------CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEE
Q 009957 290 EL-PIYLANSLN-SLRLEGQKTAAVEILQQFDW-------EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVC 360 (521)
Q Consensus 290 ~~-~~~~~ns~N-p~~i~G~~T~a~EI~eQl~~-------~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~ 360 (521)
+. +++++|++| +..++||+|+++||++|+++ ..||+||||+|+||+++|++++|+++.. +.++||+
T Consensus 203 ~~~~~~~v~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~-----p~~kVig 277 (404)
T cd06447 203 ADPMCYFVDDENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFG-----DNVHCFF 277 (404)
T ss_pred HCCCeEeCCCCCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcC-----CCCEEEE
Confidence 76 567788775 56799999999999999962 2477899999999999999999986432 4579999
Q ss_pred eccCCCchhhHHHhhCCcceeecc----cccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCC
Q 009957 361 TQAANANPLYLYYKSGWKDFKAVK----ASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGM 435 (521)
Q Consensus 361 Vq~~~~~~l~~~~~~G~~~~~~~~----~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi 435 (521)
|||++++.+..+++.|........ ...|+++|+.++.|.... +.++++..+.++.|+|+|+++++++| +++|+
T Consensus 278 VeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~--~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi 355 (404)
T cd06447 278 AEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLV--GKLMEPLLSGIYTVEDDELYRLLAMLKDSENI 355 (404)
T ss_pred EccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhH--HHHHHHhCCcEEEECHHHHHHHHHHHHHHcCc
Confidence 999998878888888742111111 257999999999887664 44567788899999999999999987 78999
Q ss_pred eeccchHHHHHHHHHHHhcCC---------CCCCCeEEEEeCCCCC
Q 009957 436 FICPHTGVALTALIKLRNSGV---------IGPLDRTVVVSTAHGL 472 (521)
Q Consensus 436 ~~ePssA~alAa~~~l~~~g~---------i~~~~~vV~v~TG~g~ 472 (521)
++||++|+++||++++.++.. -..+.+.+++.||+..
T Consensus 356 ~vepSgAa~lAAl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (404)
T cd06447 356 EVEPSAAAGFTGPAQVLSEAEGKRYVRLGYRMENATHIVWATGGSM 401 (404)
T ss_pred EEeHHHHHHHHHHHHHHHhhhHHHhcCccccccCceEEEEccCCCC
Confidence 999999999999999876422 2356778999999754
No 41
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=5.7e-49 Score=414.32 Aligned_cols=289 Identities=20% Similarity=0.277 Sum_probs=253.1
Q ss_pred CccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCCCE
Q 009957 167 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPS 246 (521)
Q Consensus 167 TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~ 246 (521)
|||+++++|++. +|. +||+|+|++|||||||||++.+++..+.+. +. .++|+++|+||||.++|++|+++|++|
T Consensus 1 TPl~~~~~ls~~-~g~-~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~---~~-~~~vv~aSsGN~g~alA~~a~~~G~~~ 74 (380)
T TIGR01127 1 TPLIYSTTLSDI-TGS-EVYLKLENLQKTGSFKIRGALNKIANLSED---QR-QRGVVAASAGNHAQGVAYAAKKFGIKA 74 (380)
T ss_pred CCceehHHHHHH-hCC-eEEEEecCCCCCCCcHHHHHHHHHHhcchh---cc-CCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 899999999876 675 899999999999999999999999876532 22 247999999999999999999999999
Q ss_pred EEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCCCcE
Q 009957 247 IVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEVPDW 325 (521)
Q Consensus 247 ~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~pD~ 325 (521)
+|+||++ ++..|+.+++.+||+|+.++++++++.+.+++++++.+++++|++ ||..++||+|+++||++|++ .||+
T Consensus 75 ~iv~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~--~~D~ 151 (380)
T TIGR01127 75 VIVMPES-APPSKVKATKSYGAEVILHGDDYDEAYAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIMEDIP--DVDT 151 (380)
T ss_pred EEEEcCC-CcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCCCCChhhhhhhHHHHHHHHHhCC--CCCE
Confidence 9999997 688999999999999999999999999999999998899999987 78999999999999999997 6999
Q ss_pred EEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHHHHH
Q 009957 326 VIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAV 405 (521)
Q Consensus 326 VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l 405 (521)
||+|+|+||+++|++++|+++ +|.+|||+|||+++++++.+++.|+ ..+.....|+++|+.+..|... .+
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~------~p~~kvigVe~~~~~~~~~~~~~g~--~~~~~~~~~~a~g~~~~~~~~~--~~ 221 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQI------NPNVKVIGVEAEGAPSMYESLREGK--IKAVESVRTIADGIAVKKPGDL--TF 221 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHHcCC--ceecCCCCCeecchhCCCccHH--HH
Confidence 999999999999999998863 3678999999999999999999885 3444556899999998887754 34
Q ss_pred HHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHH
Q 009957 406 YALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSK 478 (521)
Q Consensus 406 ~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~ 478 (521)
..+++..+.++.|+|+|+.+|+++| +++|+++||++|+++||+++.... .++++||+++||++ .+.+.+
T Consensus 222 ~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~---~~~~~vv~i~sGGn-~d~d~l 291 (380)
T TIGR01127 222 NIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD---VKGKKIAVVLSGGN-IDLNLL 291 (380)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc---cCCCeEEEEeCCCC-CCHHHH
Confidence 5567888999999999999999986 889999999999999999874322 35789999999954 556654
No 42
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=5.8e-49 Score=426.52 Aligned_cols=293 Identities=20% Similarity=0.203 Sum_probs=259.1
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.+.|||++++++++. +|. +||+|+|++||||||||||+.+++..+... .+ .++|+++|+||||.++|++|+++|
T Consensus 18 ~~~TPL~~~~~Ls~~-~g~-~i~lK~E~lqptgSfK~RgA~n~i~~l~~~--~~--~~gvV~aSaGNha~avA~aa~~lG 91 (504)
T PRK09224 18 AQETPLEKAPKLSAR-LGN-QVLLKREDLQPVFSFKLRGAYNKMAQLTEE--QL--ARGVITASAGNHAQGVALSAARLG 91 (504)
T ss_pred CCCCCceehhHhHHH-hCC-EEEEEecCCCCCCCChHHHHHHHHHhhhHH--hc--CCEEEEECcCHHHHHHHHHHHHcC
Confidence 478999999998876 675 899999999999999999999998876432 12 357999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+|+||++ ++..|+.+++.+||+|+.++++|+++.+.+++++++.++++++++ ||..++||+|+++||++|+++ .
T Consensus 92 i~~~IvmP~~-tp~~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~l~~~~g~~~v~~f~~~~~i~G~gTi~~EI~~q~~~-~ 169 (504)
T PRK09224 92 IKAVIVMPVT-TPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIHPFDDPDVIAGQGTIAMEILQQHPH-P 169 (504)
T ss_pred CCEEEEECCC-CCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcHHHHhHHHHHHHHHHhccC-C
Confidence 9999999997 788999999999999999999999999999999999899999987 799999999999999999983 5
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||||+|+||+++|++.+|+.+ .|.+|||+|||+++++++.+++.|.. ...+...|+++|+.+..+. .
T Consensus 170 ~D~vvvpvGgGGliaGia~~lk~~------~p~~kVigVe~~~~~~~~~s~~~g~~--~~~~~~~~~adg~av~~~g--~ 239 (504)
T PRK09224 170 LDAVFVPVGGGGLIAGVAAYIKQL------RPEIKVIGVEPEDSACLKAALEAGER--VDLPQVGLFADGVAVKRIG--E 239 (504)
T ss_pred CCEEEEecChhHHHHHHHHHHHHh------CCCCEEEEEEECCChHHHHHHhcCCC--ccCCCCCcccCcccCCCcc--H
Confidence 999999999999999999988764 26789999999999999999998853 3345567899999887664 3
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
..+..++++.+.++.|+|+|+.+|++++ +++|+++||++|+++||++++.+++.+. +++||+|+||++..+.
T Consensus 240 ~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~-g~~vv~i~sG~n~~~~ 312 (504)
T PRK09224 240 ETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIE-GETLVAILSGANMNFD 312 (504)
T ss_pred HHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCC-CCeEEEEECCCCCCHH
Confidence 4567778899999999999999999987 8899999999999999999988776664 8899999999998864
No 43
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=7.5e-49 Score=402.49 Aligned_cols=284 Identities=22% Similarity=0.232 Sum_probs=242.5
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
..++|||++++++... | .+||+|+|++|||||||||++..++..+.+ + .+.|+++||||||.|+|++|+++
T Consensus 20 ~i~~TPl~~~~~l~~~--~-~~i~~K~E~~nptGS~K~R~a~~~~~~~~~----~--~~~vv~aSsGN~g~a~A~~a~~~ 90 (310)
T PRK08246 20 HIRRTPVLEADGAGFG--P-APVWLKLEHLQHTGSFKARGAFNRLLAAPV----P--AAGVVAASGGNAGLAVAYAAAAL 90 (310)
T ss_pred cCCCCCeeeccccccC--C-CEEEEEECCCCCCCCCHHHHHHHHHHhhcc----c--CCeEEEeCCCHHHHHHHHHHHHc
Confidence 3588999999987632 3 489999999999999999999988876432 2 35799999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCC
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWE 321 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~ 321 (521)
|++|+||+|++ +++.|+.+++.+||+|+.++++++++.+.+++++++.++++.|++ ||++++|++|+++||++|++
T Consensus 91 G~~~~iv~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~i~g~~t~~~Ei~eq~~-- 167 (310)
T PRK08246 91 GVPATVFVPET-APPAKVARLRALGAEVVVVGAEYADALEAAQAFAAETGALLCHAYDQPEVLAGAGTLGLEIEEQAP-- 167 (310)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHHhcCCEeCCCCCChhhhcchHHHHHHHHHhcC--
Confidence 99999999997 789999999999999999999999999999999888899999987 89999999999999999997
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccH
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSI 401 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~ 401 (521)
.||+||+|+|+||+++|++++|+ +.+|||+||++++++++.+|+.|+. .+.+...+.++++... ...
T Consensus 168 ~~D~iv~~vG~GG~~~Gi~~~~~---------~~~~vi~ve~~~~~~~~~s~~~g~~--~~~~~~~~~~~~l~~~--~~~ 234 (310)
T PRK08246 168 GVDTVLVAVGGGGLIAGIAAWFE---------GRARVVAVEPEGAPTLHAALAAGEP--VDVPVSGIAADSLGAR--RVG 234 (310)
T ss_pred CCCEEEEecCccHHHHHHHHHhc---------CCCEEEEEeeCCChHHHHHHHcCCc--ccCCCCCceeccccCC--Ccc
Confidence 69999999999999999999885 2479999999999999999998853 2333334555555543 333
Q ss_pred HHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC
Q 009957 402 DRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLK 473 (521)
Q Consensus 402 ~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K 473 (521)
...+.+++++.|.++.|+|+|+++++++| +++|+++||++|+++|++++.... +.++++||+++||++..
T Consensus 235 ~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~--~~~~~~vv~i~~g~n~d 305 (310)
T PRK08246 235 EIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYV--PAPGERVAVVLCGANTD 305 (310)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCcc--ccCCCeEEEEECCCCCC
Confidence 45567778899999999999999999997 789999999999999998764322 34678999999997653
No 44
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=3.9e-49 Score=408.14 Aligned_cols=296 Identities=19% Similarity=0.239 Sum_probs=241.4
Q ss_pred cccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHH
Q 009957 161 SAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA 240 (521)
Q Consensus 161 sl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 240 (521)
...+|+|||++++++.+. +|. +||+|+|++|||||||||++.+++..+.+..+... ..+|+++||||||.|+|++|+
T Consensus 8 ~~~~g~TPL~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~ 84 (330)
T PRK10717 8 SDTIGNTPLIRLNRASEA-TGC-EILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKP-GGTIVEGTAGNTGIGLALVAA 84 (330)
T ss_pred HHHhCCCceEEccccCCC-CCC-eEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCC-CCEEEEeCCcHHHHHHHHHHH
Confidence 456899999999999876 675 89999999999999999999999987754322221 256999999999999999999
Q ss_pred hcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC-HHH---HH----HHHHHHHhc--CCccccCCC-ChHh-HhhHH
Q 009957 241 SAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD-FDG---CM----KLIREVTSE--LPIYLANSL-NSLR-LEGQK 308 (521)
Q Consensus 241 ~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~-~dd---~~----~~~~~~~~~--~~~~~~ns~-Np~~-i~G~~ 308 (521)
++|++|+||+|.+ .++.|+.+++.+||+|+.++++ +++ .. +.++++.++ .++++.|++ ||.. ..||+
T Consensus 85 ~~G~~~~vv~p~~-~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 163 (330)
T PRK10717 85 ARGYKTVIVMPET-QSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYE 163 (330)
T ss_pred HcCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHH
Confidence 9999999999997 6889999999999999999985 432 23 333343333 467888876 7875 57899
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccc
Q 009957 309 TAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTT 388 (521)
Q Consensus 309 T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~T 388 (521)
|+++||++|+++ .||+||+|+|+||+++|++++|+++. +..|||+|||+++ ++..+++.|.. . ....|
T Consensus 164 t~a~Ei~~ql~~-~~d~iv~~vG~GG~~~Gi~~~~k~~~------~~~~vi~Vep~~~-~~~~~~~~g~~--~--~~~~~ 231 (330)
T PRK10717 164 TTGPEIWEQTDG-KVDGFVCAVGTGGTLAGVSRYLKETN------PKVKIVLADPTGS-ALYSYYKTGEL--K--AEGSS 231 (330)
T ss_pred hHHHHHHHhcCC-CCCEEEEecCchHHHHHHHHHHHHhC------CCCEEEEEcCCCC-ccccccccCCc--C--CCCCc
Confidence 999999999985 58999999999999999999998641 4569999999997 67667776642 1 24468
Q ss_pred hhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 009957 389 FASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVS 467 (521)
Q Consensus 389 ia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~ 467 (521)
++++++++.+... + .....+.++.|+|+|+++++++| +++|+++||++|+++||++++.++ +.++++||+++
T Consensus 232 ~~~gl~~~~~~~~---~--~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~--~~~~~~Vv~v~ 304 (330)
T PRK10717 232 ITEGIGQGRITAN---L--EGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLARE--LGPGHTIVTIL 304 (330)
T ss_pred ccCcCCCCcCCcc---c--ChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHh--cCCCCEEEEEE
Confidence 8899987764321 1 11224679999999999999987 889999999999999999998765 35788999999
Q ss_pred CCCCCCchHHHH
Q 009957 468 TAHGLKFTQSKI 479 (521)
Q Consensus 468 TG~g~K~~~~~~ 479 (521)
||+|.||.+.++
T Consensus 305 ~g~g~ky~~~~~ 316 (330)
T PRK10717 305 CDSGERYQSKLF 316 (330)
T ss_pred CCCchhhccccc
Confidence 999999988764
No 45
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1.1e-48 Score=414.57 Aligned_cols=307 Identities=19% Similarity=0.159 Sum_probs=254.7
Q ss_pred hhcccccCCccccccccccccCC-------CCcEEEecCCCCC-CCChhHHHHHHHHHHH-HH-HHhcCC---C------
Q 009957 159 IVSAFEGNSNLFWAERFGKQFLG-------MNDLWVKHCGISH-TGSFKDLGMTVLVSQV-NR-LRKMKR---P------ 219 (521)
Q Consensus 159 ~vsl~eG~TPL~~~~~l~~~~lg-------~~~l~vK~E~~nP-TGSfKDRga~~~v~~a-~~-~~~~g~---~------ 219 (521)
..++++++|||++++++++. +| ..+||+|+|++|| ||||||||+.+++..+ +. ..+.|. +
T Consensus 63 ~~~~~~~~TPL~~~~~ls~~-~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l 141 (431)
T TIGR02035 63 AATGGIIESPLVEIFNMQKE-LEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSIL 141 (431)
T ss_pred cccCCccCCCccchHHHHHH-hhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhh
Confidence 35889999999999998774 42 1389999999999 9999999999988653 21 123332 0
Q ss_pred ----------ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHh
Q 009957 220 ----------VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTS 289 (521)
Q Consensus 220 ----------~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~ 289 (521)
.++|+++||||||.|+|++|+.+|++|+|+||++ +++.|+.+++.|||+|+.++++|+++.+.++++++
T Consensus 142 ~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~-a~~~K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~ 220 (431)
T TIGR02035 142 AEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSAD-AKQWKKDKLRSKGVTVVEYESDYGVAVEEGRKNAD 220 (431)
T ss_pred cchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHH
Confidence 1479999999999999999999999999999998 79999999999999999999999999999999988
Q ss_pred cCC-ccccCCCCh-HhHhhHHHHHHHHHHhcCC-------CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEE
Q 009957 290 ELP-IYLANSLNS-LRLEGQKTAAVEILQQFDW-------EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVC 360 (521)
Q Consensus 290 ~~~-~~~~ns~Np-~~i~G~~T~a~EI~eQl~~-------~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~ 360 (521)
+.+ +|+.|..|+ ..++||+|+++||++|+++ ..||+|++|+|.||+++|++++||++. ++.+|||+
T Consensus 221 ~~~~~~~~d~~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~-----~~~vkvi~ 295 (431)
T TIGR02035 221 ADPMCYFVDDENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAF-----GDNVHCFF 295 (431)
T ss_pred hcCCeEECCCCCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhc-----CCCCEEEE
Confidence 764 567777665 3479999999999999964 257899999999999999999998642 25689999
Q ss_pred eccCCCchhhHHHhhCCcceeecc----cccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCC
Q 009957 361 TQAANANPLYLYYKSGWKDFKAVK----ASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGM 435 (521)
Q Consensus 361 Vq~~~~~~l~~~~~~G~~~~~~~~----~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi 435 (521)
|||++++++..+++.|........ ...|+++||.++.|..+.. ..+++..+.++.|+|+|+++++++| +++|+
T Consensus 296 VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~--~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi 373 (431)
T TIGR02035 296 AEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVG--RLMEPLLSGIYTVDDYTLYDLLRILAESEGK 373 (431)
T ss_pred EeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHH--HHHHHhCCeEEEECHHHHHHHHHHHHHHcCC
Confidence 999998888888988853211111 2479999999999887643 4456678889999999999999987 78999
Q ss_pred eeccchHHHHHHHHHHHhcC-----------CCCCCCeEEEEeCCCCCCc
Q 009957 436 FICPHTGVALTALIKLRNSG-----------VIGPLDRTVVVSTAHGLKF 474 (521)
Q Consensus 436 ~~ePssA~alAa~~~l~~~g-----------~i~~~~~vV~v~TG~g~K~ 474 (521)
++||++|++++|+.++.+.. .+.++.++|+++||+++--
T Consensus 374 ~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~p 423 (431)
T TIGR02035 374 RLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGMVP 423 (431)
T ss_pred eEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCCCC
Confidence 99999999999998876652 1225789999999998873
No 46
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=1.8e-48 Score=403.72 Aligned_cols=295 Identities=19% Similarity=0.218 Sum_probs=247.0
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.++|||++++++.+. +|. +||+|+|++|||||||||++.+++..+.+ .|...++|+++|+||||.|+|++|+++|
T Consensus 21 i~~TPl~~~~~l~~~-~g~-~l~~K~E~~nptGS~K~R~a~~~v~~a~~---~g~~~~~vv~~SsGN~g~alA~~a~~~G 95 (338)
T PRK06608 21 LHLTPIVHSESLNEM-LGH-EIFFKVESLQKTGAFKVRGVLNHLLELKE---QGKLPDKIVAYSTGNHGQAVAYASKLFG 95 (338)
T ss_pred CcCCCccchHhHHHH-hCC-EEEEEeCCCCCCCCcHHHHHHHHHHHhhh---hcCcCCeEEEECCCHHHHHHHHHHHHcC
Confidence 488999999999876 676 89999999999999999999999998754 3321257999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||||.+ +++.|+.+++.+||+|+.++. .+++.+.+++ .++.++|++|++ |+.+++|++|+++||++|+++ .
T Consensus 96 ~~~~vv~p~~-~~~~k~~~l~~~GA~V~~~~~-~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~-~ 171 (338)
T PRK06608 96 IKTRIYLPLN-TSKVKQQAALYYGGEVILTNT-RQEAEEKAKE-DEEQGFYYIHPSDSDSTIAGAGTLCYEALQQLGF-S 171 (338)
T ss_pred CCEEEEECCC-CCHHHHHHHHhCCCEEEEECC-HHHHHHHHHH-HHhCCCEEcCCCCCHHHhccHHHHHHHHHHhcCC-C
Confidence 9999999997 789999999999999999975 5778777777 666788999987 889999999999999999985 6
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|+++++++ . ++.+|||+|||+++++++.+|+.|. .........|+++++.++.+. .
T Consensus 172 ~D~vv~~vG~GGt~~Gi~~~~k~---~---~~~~~vigVep~~~~~~~~s~~~g~-~~~~~~~~~t~~~gl~~~~~~--~ 242 (338)
T PRK06608 172 PDAIFASCGGGGLISGTYLAKEL---I---SPTSLLIGSEPLNANDAYLSLKNNK-IYRLNYSPNTIADGLKTLSVS--A 242 (338)
T ss_pred cCEEEEeechhHHHHHHHHHHHh---c---CCCCEEEEEeeCCChHHHHHHHcCC-eEeCCCCCCCeecccCCCCCC--H
Confidence 99999999999999999998764 2 3678999999999999999999885 222222446899998874433 3
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHh
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~ 480 (521)
..+..++..++ ++.|+|+|+++++++| +++|+++||++|++++|++++.++. .++++||+++|| |.++.+...+
T Consensus 243 ~~~~~~~~~d~-~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~--~~~~~Vv~v~tg-g~~d~~~~~~ 317 (338)
T PRK06608 243 RTFEYLKKLDD-FYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ--SKPQKLLVILSG-GNIDPILYNE 317 (338)
T ss_pred HHHHHHHhCCC-EEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh--cCCCeEEEEeCC-CccCHHHHHH
Confidence 34555566554 7899999999999997 7899999999999999999876542 467899999999 5666655433
No 47
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=1.1e-48 Score=416.69 Aligned_cols=295 Identities=20% Similarity=0.279 Sum_probs=253.0
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
..++|||++++++++. +|. +||+|+|++|||||||||++.+++..+... . . ..+|+++|+||||.++|++|++.
T Consensus 22 ~i~~TPl~~~~~ls~~-~g~-~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~-~-~--~~~Vv~aSsGN~g~alA~~a~~~ 95 (420)
T PRK08639 22 VVPETPLQRNDYLSEK-YGA-NVYLKREDLQPVRSYKLRGAYNAISQLSDE-E-L--AAGVVCASAGNHAQGVAYACRHL 95 (420)
T ss_pred cCcCCCccchHHHHHH-hCC-EEEEEecCCCCCCCcHHHHHHHHHHhCCHH-h-h--CCEEEEECccHHHHHHHHHHHHc
Confidence 4589999999998876 565 899999999999999999999998875321 1 1 25799999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhc
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAF---VLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQF 318 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~---Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl 318 (521)
|++|+|+||++ ++..|+.+++.|||+ |+.++++++++.+.+++++++.+++++|++ ||..++||+|+|+||++|+
T Consensus 96 G~~~~IvmP~~-~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~g~~~~~~~~~~~~~~G~~tig~EI~eq~ 174 (420)
T PRK08639 96 GIPGVIFMPVT-TPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETGATFIPPFDDPDVIAGQGTVAVEILEQL 174 (420)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhcCCcccCCCCChhHhcchhHHHHHHHHhc
Confidence 99999999997 688999999999996 455577899999999999998899999987 7899999999999999999
Q ss_pred CCC-CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCC
Q 009957 319 DWE-VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGD 397 (521)
Q Consensus 319 ~~~-~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~ 397 (521)
++. .||+||+|+|+||+++|++++|+++ +|.+|||+|||+++++++.+++.|. ....+...|+++|+.+..
T Consensus 175 ~~~~~~D~vv~~vG~GG~~aGva~~~k~~------~p~~~vigVep~~~~~~~~s~~~g~--~~~~~~~~t~a~gi~v~~ 246 (420)
T PRK08639 175 EKEGSPDYVFVPVGGGGLISGVTTYLKER------SPKTKIIGVEPAGAASMKAALEAGK--PVTLEKIDKFVDGAAVAR 246 (420)
T ss_pred cccCCCCEEEEecChhHHHHHHHHHHHHh------CCCCEEEEEEECCCCcHHHHHhCCC--ceeCCCCCCeecccccCC
Confidence 832 2999999999999999999988863 3678999999999999999999885 234445679999998877
Q ss_pred CccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchH
Q 009957 398 PVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQ 476 (521)
Q Consensus 398 P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~ 476 (521)
+.. ..+..+++..+.++.|+|+|+.+|+++| +++|+++||++|+++||++++.+. + ++++||+++||++. +.+
T Consensus 247 ~g~--~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~-~~~~vv~v~sGgn~-d~~ 320 (420)
T PRK08639 247 VGD--LTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--I-KGKTVVCVISGGNN-DIE 320 (420)
T ss_pred ccH--HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--c-CCCeEEEEeCCCCC-CHH
Confidence 754 3455677888999999999999999986 889999999999999999987644 3 67899999999766 344
Q ss_pred HH
Q 009957 477 SK 478 (521)
Q Consensus 477 ~~ 478 (521)
.+
T Consensus 321 ~~ 322 (420)
T PRK08639 321 RM 322 (420)
T ss_pred HH
Confidence 44
No 48
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-48 Score=413.83 Aligned_cols=292 Identities=17% Similarity=0.185 Sum_probs=252.4
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
-++|||+++++++.. +|. +||+|+|++|||||||||++.+++..+.+. .+ .+.|+++|+||||.|+|++|+++|
T Consensus 21 i~~TPl~~~~~l~~~-~g~-~l~~K~E~~nptGS~KdR~a~~~i~~~~~~--~~--~~~vv~aSsGN~g~alA~~a~~~G 94 (403)
T PRK07334 21 VLRTPCVHSRTLSQI-TGA-EVWLKFENLQFTASFKERGALNKLLLLTEE--ER--ARGVIAMSAGNHAQGVAYHAQRLG 94 (403)
T ss_pred CCCCCccchHHHHHh-hCC-eEEEEeccCCCCCCchHHHHHHHHHhcCHH--Hh--CCcEEEECCcHHHHHHHHHHHHcC
Confidence 489999999998876 675 899999999999999999999999875322 12 245899999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEV 322 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~ 322 (521)
++|+||+|.+ .++.|+.+++.+||+|+.++++++++.+.+++++++.++++.+++ ||.+++||+|+|+||++|++ .
T Consensus 95 ~~~~iv~p~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~--~ 171 (403)
T PRK07334 95 IPATIVMPRF-TPTVKVERTRGFGAEVVLHGETLDEARAHARELAEEEGLTFVHPYDDPAVIAGQGTVALEMLEDAP--D 171 (403)
T ss_pred CCEEEEECCC-CCHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEecCCCCCHHHHHhHHHHHHHHHhcCC--C
Confidence 9999999997 688999999999999999999999999999999998888999987 69999999999999999997 6
Q ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHH
Q 009957 323 PDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSID 402 (521)
Q Consensus 323 pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~ 402 (521)
||+||+|+|+||+++|++++|+++ ++.+|||+|||+++++++.+++.+. . .....|+++|++++.|....
T Consensus 172 ~d~vv~~vG~GG~~~Gi~~~lk~~------~~~~~vi~ve~~~~~~~~~~~~~~~--~--~~~~~~~~~gi~~~~~~~~~ 241 (403)
T PRK07334 172 LDTLVVPIGGGGLISGMATAAKAL------KPDIEIIGVQTELYPSMYAAIKGVA--L--PCGGSTIAEGIAVKQPGQLT 241 (403)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHh------CCCCEEEEEEECCCchHHHHHhCCC--c--cCCCCCccceecCCCccHHH
Confidence 999999999999999999998864 2678999999999999998886542 1 12456899999988777654
Q ss_pred HHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHh
Q 009957 403 RAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480 (521)
Q Consensus 403 ~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~ 480 (521)
. .++++..+.++.|+|+|+++++++| +++|+++||++|+++||++++.+. .++++||+++||++ .+.+.+.+
T Consensus 242 ~--~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~---~~~~~vv~i~~ggn-~d~~~l~~ 314 (403)
T PRK07334 242 L--EIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER---FRGRKVGLVLSGGN-IDTRLLAN 314 (403)
T ss_pred H--HHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh---cCCCeEEEEECCCC-CCHHHHHH
Confidence 3 3457788999999999999999997 789999999999999999886553 25789999999964 55665533
No 49
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=6e-48 Score=406.87 Aligned_cols=304 Identities=18% Similarity=0.187 Sum_probs=252.3
Q ss_pred cCCccccccccccccCCCCcEEEecCCCC-CCCChhHHHHHHHHHHHHHHHhcC-------------------CCceEEE
Q 009957 165 GNSNLFWAERFGKQFLGMNDLWVKHCGIS-HTGSFKDLGMTVLVSQVNRLRKMK-------------------RPVVGVG 224 (521)
Q Consensus 165 G~TPL~~~~~l~~~~lg~~~l~vK~E~~n-PTGSfKDRga~~~v~~a~~~~~~g-------------------~~~~~Vv 224 (521)
..|||++++.|+.. +|+.+||+|+|+++ |||||||||+.+.+..+... +.| .+..+|+
T Consensus 40 ~~TPL~~~~~L~~~-~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~-~~g~~~~~~~~~~l~~~~~~~~~~~~~vv 117 (396)
T TIGR03528 40 QPTPLAELDNLAKH-LGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAE-KLGKDISELSFEKLKSNEIREKLGDITFV 117 (396)
T ss_pred cCCCCcchHHHHHH-hCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHH-HhCCCcccccHHHhhhHHHHhhccCcEEE
Confidence 46999999999887 78668999999987 59999999999999875220 111 1123799
Q ss_pred EeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCC-----C
Q 009957 225 CASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANS-----L 299 (521)
Q Consensus 225 ~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-----~ 299 (521)
++|+||||.|+|++|+++|++|+||||++ +++.|+.+|+.+||+|+.++++++++.+.+++++++.++++++. +
T Consensus 118 ~aSsGN~g~alA~~aa~~Gi~~~IvvP~~-~~~~K~~~ir~~GAeVi~~~~~~~~a~~~a~~~a~~~g~~~v~~~~~~~~ 196 (396)
T TIGR03528 118 TATDGNHGRGVAWAANQLGQKSVVYMPKG-SAQIRLENIRAEGAECTITDLNYDDAVRLAWKMAQENGWVMVQDTAWEGY 196 (396)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEEeCC-CcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcEeecccccccc
Confidence 99999999999999999999999999997 78899999999999999999999999999999998888877752 2
Q ss_pred ---ChHhHhhHHHHHHHHHHhcC---CCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHH
Q 009957 300 ---NSLRLEGQKTAAVEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYY 373 (521)
Q Consensus 300 ---Np~~i~G~~T~a~EI~eQl~---~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~ 373 (521)
+++.++||+|+++||++|++ |..||+||+|+|+||++.|++.+|+++.. +..||||+|||++++++++++
T Consensus 197 ~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~----~~~p~vi~Vep~~a~~l~~s~ 272 (396)
T TIGR03528 197 EKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYG----EERPITVIVEPDAADCLYRSA 272 (396)
T ss_pred ccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcC----CCCCEEEEEccCCCchHHHHH
Confidence 36778999999999999997 34699999999999999999988865432 245799999999999999999
Q ss_pred hhCCcceeecc-cccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-H----hcCCeeccchHHHHHH
Q 009957 374 KSGWKDFKAVK-ASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-D----STGMFICPHTGVALTA 447 (521)
Q Consensus 374 ~~G~~~~~~~~-~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~----~eGi~~ePssA~alAa 447 (521)
+.+.......+ ...|+++++.++.|.... +.+++++.+.++.|+|+|+.+++++| . ++++++||++|+++||
T Consensus 273 ~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~--~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aa 350 (396)
T TIGR03528 273 IADDGKPHFVTGDMATIMAGLACGEPNTIG--WEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGL 350 (396)
T ss_pred HhcCCCEEEeCCCccceecccccCCccHHH--HHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHH
Confidence 87322345554 457999999988887653 66778889999999999999999987 4 4699999999999965
Q ss_pred H---H------HHHhcCCCCCCCeEEEEeCCCCCCchHHH
Q 009957 448 L---I------KLRNSGVIGPLDRTVVVSTAHGLKFTQSK 478 (521)
Q Consensus 448 ~---~------~l~~~g~i~~~~~vV~v~TG~g~K~~~~~ 478 (521)
+ + ++.+++.+.++++||+++||++. +++.+
T Consensus 351 laa~~~~~~~~~~~~~~~~~~~~~vv~i~tggn~-d~~~~ 389 (396)
T TIGR03528 351 LAAVMTNPDYKELREKLQLDKNSRVLLISTEGDT-DPDNY 389 (396)
T ss_pred HHHHHhCchhHHHHHhcCCCCCCEEEEEECCCCC-CHHHH
Confidence 5 2 24556667778999999999765 45554
No 50
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=4.2e-48 Score=393.67 Aligned_cols=282 Identities=22% Similarity=0.258 Sum_probs=237.8
Q ss_pred cCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCC
Q 009957 165 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGI 244 (521)
Q Consensus 165 G~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi 244 (521)
|.|||++++++.+. .|. +||+|+|++|||||||||++.+++..+.+..+.. +..+|+++|+||||.|+|++|+++|+
T Consensus 1 g~TPl~~~~~l~~~-~g~-~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~-~~~~vv~~SsGN~g~alA~~a~~~G~ 77 (291)
T cd01561 1 GNTPLVRLNRLSPG-TGA-EIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLK-PGTTIIEPTSGNTGIGLAMVAAAKGY 77 (291)
T ss_pred CCCCEEEccccCCC-CCC-eEEEEecccCCCCcchHHHHHHHHHHHHHcCCCC-CCCEEEEeCCChHHHHHHHHHHHcCC
Confidence 68999999999876 665 8999999999999999999999998765321111 12568999999999999999999999
Q ss_pred CEEEEccCCcCCHHhHHhHHhCCCEEEEECCCH----HHHHHHHHHHHhcC-CccccCCC-ChHhHhhHH-HHHHHHHHh
Q 009957 245 PSIVFLPANKISIAQLVQPIANGAFVLSIDTDF----DGCMKLIREVTSEL-PIYLANSL-NSLRLEGQK-TAAVEILQQ 317 (521)
Q Consensus 245 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~----dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~G~~-T~a~EI~eQ 317 (521)
+|+||+|.+ +++.|+.+|+.+||+|+.+++++ +++.+.++++.++. ++++++++ ||.+++|+. |+++||++|
T Consensus 78 ~~~i~vp~~-~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~q 156 (291)
T cd01561 78 RFIIVMPET-MSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQ 156 (291)
T ss_pred eEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHH
Confidence 999999997 78999999999999999999987 78888899988877 78999975 899999987 999999999
Q ss_pred cCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCC
Q 009957 318 FDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGD 397 (521)
Q Consensus 318 l~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~ 397 (521)
+++ .||+||+|+|+||+++|++++|+++. +.++||+||+++++++. .+ ....+++++|+...
T Consensus 157 l~~-~~d~vv~~~G~Gg~~~Gi~~~~~~~~------~~~~vi~Ve~~~~~~~~----~~-------~~~~~~~~gi~~~~ 218 (291)
T cd01561 157 LDG-KVDAFVAGVGTGGTITGVARYLKEKN------PNVRIVGVDPVGSVLFS----GG-------PPGPHKIEGIGAGF 218 (291)
T ss_pred cCC-CCCEEEEeCChHHHHHHHHHHHHHhC------CCCEEEEEecCCCcccC----CC-------CCCCCcCCCCCCCC
Confidence 985 79999999999999999999998642 57899999999987761 11 12355667776552
Q ss_pred -CccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 398 -PVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 398 -P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
|... .....+.++.|+|+|++++++.+ +++|+++||++|+++|+++++.++. .++++||+++||+|.||.
T Consensus 219 ~~~~~------~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~--~~~~~vv~v~~~~g~ky~ 290 (291)
T cd01561 219 IPENL------DRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRL--GPGKTIVTILPDSGERYL 290 (291)
T ss_pred CCCcc------CchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhc--CCCCeEEEEECCCccccC
Confidence 2211 12345679999999999999997 7899999999999999999988764 368899999999999986
Q ss_pred H
Q 009957 476 Q 476 (521)
Q Consensus 476 ~ 476 (521)
+
T Consensus 291 ~ 291 (291)
T cd01561 291 S 291 (291)
T ss_pred C
Confidence 4
No 51
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=9.3e-48 Score=392.65 Aligned_cols=285 Identities=20% Similarity=0.213 Sum_probs=233.9
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.|+|||++++++.+. +|. +||+|+|++|||||||||++.+++..+.+..+..+ .++|+++|+||||.|+|++|+++|
T Consensus 5 vg~TPL~~~~~l~~~-~g~-~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~~~G 81 (299)
T TIGR01136 5 IGNTPLVRLNRLAPG-CDA-RVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKP-GDTIIEATSGNTGIALAMVAAAKG 81 (299)
T ss_pred cCCCceEEccccCCC-CCc-eEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCC-CCEEEEeCCChHHHHHHHHHHHcC
Confidence 488999999998876 664 89999999999999999999999887654322121 246899999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC--HHHHHHHHHHHHhcC-CccccCCC-ChHh-HhhHHHHHHHHHHhc
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTD--FDGCMKLIREVTSEL-PIYLANSL-NSLR-LEGQKTAAVEILQQF 318 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~--~dd~~~~~~~~~~~~-~~~~~ns~-Np~~-i~G~~T~a~EI~eQl 318 (521)
++|+||||++ +++.|+.+|+.+||+|+.++++ ++++.+.+++++++. ++++.|++ |+.. +.||+|+++||++|+
T Consensus 82 ~~~~i~vp~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 82 YKLILTMPET-MSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CcEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 9999999997 7889999999999999999987 588999999988886 67788876 6664 778999999999999
Q ss_pred CCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccC-C
Q 009957 319 DWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIG-D 397 (521)
Q Consensus 319 ~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~-~ 397 (521)
++ .||+||+|+|+||+++|++++|+++. +.+|||+||+++++++..+ +.+.. ... ++..+ .
T Consensus 161 ~~-~~d~iv~~vG~Gg~~~G~~~~~~~~~------~~~~vi~Ve~~~~~~~~~~-~~~~~------~~~----~i~~~~~ 222 (299)
T TIGR01136 161 DG-RIDHFVAGVGTGGTITGVGRYLKEQN------PNIKIVAVEPAESPVLSGG-EPGPH------KIQ----GIGAGFI 222 (299)
T ss_pred CC-CCCEEEEcCchhHHHHHHHHHHHHhC------CCCEEEEEecCCCccccCC-CCCCc------cCC----CCCCCCC
Confidence 85 59999999999999999999998642 5689999999998887654 11210 111 22211 1
Q ss_pred CccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchH
Q 009957 398 PVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQ 476 (521)
Q Consensus 398 P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~ 476 (521)
|..+. .+..+.++.|+|+|+++++++| +++|+++||++|+++++++++.++. ..++++||+++||+|.||.+
T Consensus 223 ~~~~~------~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~-~~~~~~vv~i~~d~g~ky~~ 295 (299)
T TIGR01136 223 PKILD------LSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKLAKRL-ENADKVIVAILPDTGERYLS 295 (299)
T ss_pred CccCC------hhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccC
Confidence 22111 2234579999999999999997 7899999999999999999988763 23578999999999999987
Q ss_pred H
Q 009957 477 S 477 (521)
Q Consensus 477 ~ 477 (521)
+
T Consensus 296 ~ 296 (299)
T TIGR01136 296 T 296 (299)
T ss_pred c
Confidence 5
No 52
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=3e-47 Score=400.69 Aligned_cols=295 Identities=16% Similarity=0.149 Sum_probs=232.2
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.|+|||++++++... .|. +||+|+|++|||||||||++.+++..+.+..+... ...|+++||||||.|+|++|+.+|
T Consensus 51 ig~TPLv~~~~l~~~-~g~-~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~-~g~VveaSSGN~g~alA~~aa~~G 127 (423)
T PLN02356 51 IGNTPLIRINSLSEA-TGC-EILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFP-GGVVTEGSAGSTAISLATVAPAYG 127 (423)
T ss_pred cCCCceEECcccccc-cCC-EEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCC-CCEEEEeCCHHHHHHHHHHHHHcC
Confidence 499999999998765 564 79999999999999999999999988754322212 235778999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECC-------CH--------HHHHHHHHHHHhc------------------
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDT-------DF--------DGCMKLIREVTSE------------------ 290 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g-------~~--------dd~~~~~~~~~~~------------------ 290 (521)
++|+||||++ +++.|+.+|+.|||+|+.+++ ++ +++.+++++..++
T Consensus 128 ~~~~ivvP~~-~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~ 206 (423)
T PLN02356 128 CKCHVVIPDD-VAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEE 206 (423)
T ss_pred CcEEEEECCC-CcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 9999999997 799999999999999999964 12 1222233332221
Q ss_pred -----------CCccccCCC-ChH--hHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCC
Q 009957 291 -----------LPIYLANSL-NSL--RLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMP 356 (521)
Q Consensus 291 -----------~~~~~~ns~-Np~--~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~p 356 (521)
.+.+++|++ |+. ++.|+.| |+||++|+++ .||+||+|+|+||+++|++++||++ +|..
T Consensus 207 ~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gT-g~EI~eQl~g-~~D~vVv~vGtGGti~Gva~~lK~~------~P~v 278 (423)
T PLN02356 207 EKENSLFSSSCTGGFFADQFENLANFRAHYEGT-GPEIWEQTQG-NLDAFVAAAGTGGTLAGVSRFLQEK------NPNI 278 (423)
T ss_pred cccccccccCCCCcEecCccCCcchHHHHHhhH-HHHHHHhcCC-CCCEEEeCCCchHHHHHHHHHHHHh------CCCC
Confidence 345667765 554 4778887 9999999974 6999999999999999999998863 3678
Q ss_pred eEEEeccCCCc---------hhhHHHhhCCcceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHH
Q 009957 357 RLVCTQAANAN---------PLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAM 427 (521)
Q Consensus 357 rli~Vq~~~~~---------~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~ 427 (521)
|||+|||+++. .++++++.|... .. ..+|+++|++++.+... + .....+.++.|+|+|+++++
T Consensus 279 kVigVep~~s~~~~~~~~~~~~~~s~~~G~~~--~~-~~~tia~Gig~~~~~~~---~--~~~~vD~~v~Vsd~ea~~a~ 350 (423)
T PLN02356 279 KCFLIDPPGSGLFNKVTRGVMYTREEAEGRRL--KN-PFDTITEGIGINRLTQN---F--LMAKLDGAFRGTDKEAVEMS 350 (423)
T ss_pred EEEEEecCCCccccccccchhhhhhhhcCCcc--CC-CCCeecCcCcCCCCChh---H--hHHhCCcEEEECHHHHHHHH
Confidence 99999999865 344556666421 11 22689999988754322 1 12334557789999999999
Q ss_pred HHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHh
Q 009957 428 AQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480 (521)
Q Consensus 428 ~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~ 480 (521)
++| +++|+++||+||+++||++++.+. +.++++||+|+||+|.||.+++++
T Consensus 351 r~L~~~~Gl~vg~Ssaa~laaa~~la~~--~~~g~~VV~Il~d~G~kyl~~~~~ 402 (423)
T PLN02356 351 RYLLKNDGLFVGSSSAMNCVGAVRVAQS--LGPGHTIVTILCDSGMRHLSKFHD 402 (423)
T ss_pred HHHHHHCCeeEeECHHHHHHHHHHHHHH--hCCCCeEEEEECCCCcchhhhhcC
Confidence 997 889999999999999999998764 456889999999999999887643
No 53
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=3.1e-47 Score=403.21 Aligned_cols=327 Identities=16% Similarity=0.051 Sum_probs=251.5
Q ss_pred CccccccccccCCCCcchhhcccccCCccccccccccccCCC-CcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCC
Q 009957 141 SGVWSKKEWVLPEIDPDDIVSAFEGNSNLFWAERFGKQFLGM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 219 (521)
Q Consensus 141 ~~iwr~~~~~lP~~~~~~~vsl~eG~TPL~~~~~l~~~~lg~-~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~ 219 (521)
.+.|||.++ ...+ .+...+.++.|||+++++|.+. +|. .+||+|+|++|||||||||++..++..++ +.|.
T Consensus 46 ~~~~r~~~~-~~~v--~~~~~l~g~pTPL~r~~~L~~~-lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~---~~G~- 117 (419)
T TIGR01415 46 VSGERWIKI-PGEV--LKRYAQIGRPTPLIRAKGLEEL-LGTPARIYYKYESVSPTGSHKINTAIAQAYYAK---IEGA- 117 (419)
T ss_pred ccHhhHHhh-HHHH--HHHHHhcCCCCCeEEccchhhh-hCCCceEEEEECCCCCCCCcHHHHHHHHHHHHH---HcCC-
Confidence 368999984 2122 3457778789999999999876 775 38999999999999999999998887764 3453
Q ss_pred ceEEE-EeCCchHHHHHHHHHHhcCCCEEEEccCCc--CCHHhHHhHHhCCCEEEEECCCHHHHH---------------
Q 009957 220 VVGVG-CASTGDTSAALSAYCASAGIPSIVFLPANK--ISIAQLVQPIANGAFVLSIDTDFDGCM--------------- 281 (521)
Q Consensus 220 ~~~Vv-~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~--~s~~k~~q~~~~GA~Vi~v~g~~dd~~--------------- 281 (521)
+.++ ++|+||+|.|+|++|+.+|++|+||||+.. .++.|+.+|+.+||+|+.++++++++.
T Consensus 118 -~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~ 196 (419)
T TIGR01415 118 -KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLG 196 (419)
T ss_pred -CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchH
Confidence 3455 468999999999999999999999999852 356788899999999999999887753
Q ss_pred ---HHHHHHHhcC--CccccCCCChHhHhhHHHHHHHHHHhcCCC--CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCC
Q 009957 282 ---KLIREVTSEL--PIYLANSLNSLRLEGQKTAAVEILQQFDWE--VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDR 354 (521)
Q Consensus 282 ---~~~~~~~~~~--~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~--~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~ 354 (521)
..+.+.+++. ..|..++++...+.||+++|+||++|+++. .||+||+|+|+||+++|++.+|.+.+..|. +
T Consensus 197 ~ai~~a~e~a~~~~~~~y~~~~~~n~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~--~ 274 (419)
T TIGR01415 197 IAISEAIEYALSDEDTKYSLGSVLNHVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGK--I 274 (419)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCC--C
Confidence 2344444432 356666653345779999999999999742 599999999999999999999987766675 3
Q ss_pred CCeEEEeccCCCchhhHHHh------hCCcceeec----------ccccchhhhhccCCCccHHHHHHHH-HhcCCeEEE
Q 009957 355 MPRLVCTQAANANPLYLYYK------SGWKDFKAV----------KASTTFASAIQIGDPVSIDRAVYAL-KNCNGIVEE 417 (521)
Q Consensus 355 ~prli~Vq~~~~~~l~~~~~------~G~~~~~~~----------~~~~Tia~~i~i~~P~~~~~~l~~l-~~~~g~~v~ 417 (521)
.+|||+|||++|+++.+.+. ++. ..+. ....+.++|+.+..+... +..+ +.....++.
T Consensus 275 ~~rviaVep~~~~~l~~g~~~yd~~~~~~--~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~---~~~l~~~~~~~~~~ 349 (419)
T TIGR01415 275 DRRFIAAEPKACPTLTRGEYRYDFGDTAG--LTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPT---LSLLVNLGIVEARA 349 (419)
T ss_pred CCEEEEEeeCCChhhhcCccccccccccc--CCcceeeeecCCCCCCcceeccccccCCccHH---HHHHhhcCceEEEE
Confidence 68999999999998876541 111 1111 123577788887665543 2333 333346789
Q ss_pred eCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCC-CCCeEEEEeCCCCCCchHHHHhhhc
Q 009957 418 ATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIG-PLDRTVVVSTAHGLKFTQSKIDYHS 483 (521)
Q Consensus 418 Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~-~~~~vV~v~TG~g~K~~~~~~~~~~ 483 (521)
|+|+|+++|+++| +++||+++|+||+++||++++.+++... ++.+||+++||||+++.+...+++.
T Consensus 350 V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~~y~~~~~ 417 (419)
T TIGR01415 350 YDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLKAYAKYLH 417 (419)
T ss_pred ECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHHHHHHHhc
Confidence 9999999999997 7899999999999999999987775442 3346788999999999887755543
No 54
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.5e-47 Score=388.69 Aligned_cols=278 Identities=19% Similarity=0.206 Sum_probs=229.5
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
..|+|||++++++... .|. +||+|+|++|||||||||++.+++..+.+.....+ ..+|+++||||||.|+|++|+.+
T Consensus 9 ~~g~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~~~ 85 (296)
T PRK11761 9 TIGNTPLVKLQRLPPD-RGN-TILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKP-GDTLIEATSGNTGIALAMIAAIK 85 (296)
T ss_pred hcCCCceEeccccccC-CCC-EEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCC-CCEEEEeCCChHHHHHHHHHHHc
Confidence 3699999999988765 564 89999999999999999999999998754322211 25699999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC--CHHHHHHHHHHHHhcCCccccCCC-ChHhHh-hHHHHHHHHHHhc
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDT--DFDGCMKLIREVTSELPIYLANSL-NSLRLE-GQKTAAVEILQQF 318 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~-G~~T~a~EI~eQl 318 (521)
|++|+||+|++ +++.|+.+|+.+||+|+.+++ +++++.+.++++.++.+++++|++ |+.... |++|+++||++|+
T Consensus 86 G~~~~i~~p~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~ 164 (296)
T PRK11761 86 GYRMKLIMPEN-MSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWRQT 164 (296)
T ss_pred CCCEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhccCCEecCCCCChhhHHHHhhchHHHHHHhc
Confidence 99999999997 788999999999999999996 789999999999888888888876 566544 5799999999999
Q ss_pred CCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCC
Q 009957 319 DWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDP 398 (521)
Q Consensus 319 ~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P 398 (521)
++ .+|+||+|+|+||+++|++++|+++ .+.+|||+|||++++++. |. .... . .. .|
T Consensus 165 ~~-~~d~iv~~vG~Gg~~~Gi~~~lk~~------~~~~kvigVep~~~~~i~-----g~---~~~~--~----~~---~~ 220 (296)
T PRK11761 165 EG-RITHFVSSMGTTGTIMGVSRYLKEQ------NPAVQIVGLQPEEGSSIP-----GI---RRWP--E----EY---LP 220 (296)
T ss_pred CC-CCCEEEecCCcHHHHHHHHHHHHHh------CCCCEEEEEecCCCCcCc-----CC---CCCC--C----Cc---CC
Confidence 75 5899999999999999999998874 267899999999876552 10 0000 0 00 11
Q ss_pred ccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHH
Q 009957 399 VSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQS 477 (521)
Q Consensus 399 ~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~ 477 (521)
... .....+.++.|+|+|+++++++| +++|+++||++|+++++++++.++ .++++||+|+||+|.||+++
T Consensus 221 ~~~------~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~~~~---~~~~~vV~v~~d~g~ky~~~ 291 (296)
T PRK11761 221 KIF------DASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRIARE---NPNAVIVAIICDRGDRYLST 291 (296)
T ss_pred ccc------ChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHHHHH---CCCCeEEEEECCCCcccCCh
Confidence 111 02234578999999999999987 789999999999999999998765 25789999999999999986
No 55
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=3.5e-47 Score=388.18 Aligned_cols=284 Identities=21% Similarity=0.251 Sum_probs=230.5
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
..|+|||++++++ .. +|. +||+|+|++|||||||||++.+++..+.+.....+ ..+|+++|+||+|.|+|++|+++
T Consensus 4 ~~g~TPl~~~~~~-~~-~g~-~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 4 LIGNTPLVRLNRI-EG-CNA-NVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKP-GKTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccCCCceEEcccc-CC-CCc-eEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCC-CCEEEEeCCChhHHHHHHHHHHc
Confidence 4689999999883 33 453 89999999999999999999999987654322111 24689999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCH--HHHHHHHHHHHhcCC--ccccCCC-ChHh-HhhHHHHHHHHHH
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDF--DGCMKLIREVTSELP--IYLANSL-NSLR-LEGQKTAAVEILQ 316 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~--dd~~~~~~~~~~~~~--~~~~ns~-Np~~-i~G~~T~a~EI~e 316 (521)
|++|+||+|++ +++.|+.+|+.+||+|+.+++++ +++.+.+++++++.+ ++++|++ ||.+ +.|++|+++||++
T Consensus 80 Gl~~~i~vp~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~ 158 (298)
T TIGR01139 80 GYKLILTMPET-MSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWR 158 (298)
T ss_pred CCeEEEEeCCc-cCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHH
Confidence 99999999997 78899999999999999999986 577888888888776 6577776 7774 7799999999999
Q ss_pred hcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccC
Q 009957 317 QFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIG 396 (521)
Q Consensus 317 Ql~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~ 396 (521)
|+++ .||+||+|+|+||+++|++++|+++. +.+|||+||+++++.+... +.+ .+..+++..+
T Consensus 159 q~~~-~~d~vv~~vG~Gg~~~Gi~~~~~~~~------~~~~vi~Ve~~~~~~~~~~-~~~----------~~~~~gl~~~ 220 (298)
T TIGR01139 159 DTDG-KLDAFVAGVGTGGTITGVGEVLKEQK------PNIKIVAVEPAESPVLSGG-KPG----------PHKIQGIGAG 220 (298)
T ss_pred HhCC-CCCEEEEecchhHhHHHHHHHHHhcC------CCCEEEEEecCCCcccCCC-CCC----------CCCCCCCCCC
Confidence 9985 59999999999999999999998642 4679999999997655432 111 2233455432
Q ss_pred C-CccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCc
Q 009957 397 D-PVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKF 474 (521)
Q Consensus 397 ~-P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~ 474 (521)
. |..+. ....+.++.|+|+|+++++++| +++|+++||+||+++++++++.+. +.++++||+++||+|.||
T Consensus 221 ~~~~~~~------~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~--~~~~~~vv~v~~d~G~ky 292 (298)
T TIGR01139 221 FIPKNLN------RSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKLAKR--PEPDKLIVVILPSTGERY 292 (298)
T ss_pred CCCCccC------hhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHh--cCCCCEEEEEECCCCccc
Confidence 2 22211 1223578999999999999997 789999999999999999998765 446789999999999999
Q ss_pred hHH
Q 009957 475 TQS 477 (521)
Q Consensus 475 ~~~ 477 (521)
.++
T Consensus 293 ~~~ 295 (298)
T TIGR01139 293 LST 295 (298)
T ss_pred cCc
Confidence 875
No 56
>PLN03013 cysteine synthase
Probab=100.00 E-value=1.4e-46 Score=395.89 Aligned_cols=291 Identities=19% Similarity=0.168 Sum_probs=238.4
Q ss_pred hcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHH
Q 009957 160 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYC 239 (521)
Q Consensus 160 vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~a 239 (521)
+...+|+|||++++.+... .|. +||+|+|++|||||||||++.+++..+++.+....+...|+++||||||.|+|++|
T Consensus 117 i~~~iG~TPLv~l~~l~~~-~g~-~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a 194 (429)
T PLN03013 117 VSQLIGKTPMVYLNSIAKG-CVA-NIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIA 194 (429)
T ss_pred HHhcCCCCCeEECcccccc-cCC-eEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHH
Confidence 4567899999999988765 454 89999999999999999999999998765433223335699999999999999999
Q ss_pred HhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC--HHHHHHHHHHHHhcC-CccccCCC-ChHhHh-hHHHHHHHH
Q 009957 240 ASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD--FDGCMKLIREVTSEL-PIYLANSL-NSLRLE-GQKTAAVEI 314 (521)
Q Consensus 240 a~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~--~dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~-G~~T~a~EI 314 (521)
+.+|++++||||++ +++.|+.+|+.+||+|+.++++ ++++.+.+++++++. ++|+.|++ ||.+++ ||+|+|+||
T Consensus 195 ~~~G~~~~VvvP~~-~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI 273 (429)
T PLN03013 195 ASRGYRLILTMPAS-MSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEI 273 (429)
T ss_pred HHcCCCEEEEECCC-CcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999997 7999999999999999999876 557888899988875 68888886 899875 999999999
Q ss_pred HHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhc
Q 009957 315 LQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQ 394 (521)
Q Consensus 315 ~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~ 394 (521)
++|+++ .||+||+|+|+||+++|++++|++. .|..|||+|||++++++. .|.. ..+..+|++
T Consensus 274 ~eq~~~-~~D~vV~~vGtGGtisGiar~lKe~------~P~vkVigVep~gs~~l~----~g~~-------~~~~i~Glg 335 (429)
T PLN03013 274 WDDTKG-KVDIFVAGIGTGGTITGVGRFIKEK------NPKTQVIGVEPTESDILS----GGKP-------GPHKIQGIG 335 (429)
T ss_pred HHhcCC-CCCEEEEeCCccHHHHHHHHHHHhh------CCCCEEEEEEeCCCchhh----CCCC-------CCcccCccc
Confidence 999974 6999999999999999999998862 367799999999987662 2321 123446676
Q ss_pred cCC-CccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeE-EEEeCCCC
Q 009957 395 IGD-PVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRT-VVVSTAHG 471 (521)
Q Consensus 395 i~~-P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~v-V~v~TG~g 471 (521)
++. |.++. ++..+.++.|+|+|+++++++| +++|++++|++|++++|++++.+... .++++| |++.+++|
T Consensus 336 ~~~ip~~~~------~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~-~~g~~IVv~i~~d~g 408 (429)
T PLN03013 336 AGFIPKNLD------QKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPE-NAGKLIAVSLFASGR 408 (429)
T ss_pred CCcCCHhHH------HHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhcc-CCCCEEEEEEcCCCc
Confidence 554 44332 2345789999999999999997 78999999999999999999876532 245555 66778889
Q ss_pred CCchHHH
Q 009957 472 LKFTQSK 478 (521)
Q Consensus 472 ~K~~~~~ 478 (521)
.||....
T Consensus 409 ~~Y~~~~ 415 (429)
T PLN03013 409 DIYTPRC 415 (429)
T ss_pred hhchhhh
Confidence 9997764
No 57
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=2.1e-46 Score=391.56 Aligned_cols=294 Identities=17% Similarity=0.169 Sum_probs=237.2
Q ss_pred hhhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHH
Q 009957 158 DIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSA 237 (521)
Q Consensus 158 ~~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa 237 (521)
+.+++..|+|||++++++... .|. +||+|+|++|||||||||++.+++..+.+.+..+.+..+|+++||||||.|+|+
T Consensus 51 ~~v~~~ig~TPl~~l~~l~~~-~g~-~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 51 TDASQLIGKTPLVYLNKVTEG-CGA-YIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhHHHhcCCCccEEccccccc-cCC-EEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 346788999999999988765 554 899999999999999999999999987643333334467999999999999999
Q ss_pred HHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCH--HHHHHHHHHHHhcC-CccccCCC-ChHhHh-hHHHHHH
Q 009957 238 YCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDF--DGCMKLIREVTSEL-PIYLANSL-NSLRLE-GQKTAAV 312 (521)
Q Consensus 238 ~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~--dd~~~~~~~~~~~~-~~~~~ns~-Np~~i~-G~~T~a~ 312 (521)
+|+.+|++|+|++|++ ++..|+.+|+.+||+|+.++... ....+.+++++++. +++++|++ ||.+++ |++|+++
T Consensus 129 ~a~~~G~~~~ivvp~~-~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~ 207 (368)
T PLN02556 129 MAAMKGYKMILTMPSY-TSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGP 207 (368)
T ss_pred HHHHcCCCEEEEECCC-CCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHH
Confidence 9999999999999997 79999999999999999998532 25666677777665 67888876 899875 9999999
Q ss_pred HHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhh
Q 009957 313 EILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASA 392 (521)
Q Consensus 313 EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~ 392 (521)
||++|+++ .+|+||+|+|+||+++|++++|+++ .+.+|||+||+++++++ ..|.. .... ..|
T Consensus 208 EI~eq~~~-~~D~vV~~vGtGGt~aGv~~~lk~~------~p~~kVigVep~~~~~~----~~g~~------~~~~-i~g 269 (368)
T PLN02556 208 EIWEDTLG-QVDIFVMGIGSGGTVSGVGKYLKSK------NPNVKIYGVEPAESNVL----NGGKP------GPHH-ITG 269 (368)
T ss_pred HHHHhcCC-CCCEEEEcCCcchHHHHHHHHHHHh------CCCCEEEEEeeCCCccc----cCCCC------CCee-eee
Confidence 99999864 6999999999999999999998864 26789999999997654 22321 1112 245
Q ss_pred hccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCC
Q 009957 393 IQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHG 471 (521)
Q Consensus 393 i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g 471 (521)
++++.+... +. .+..+.++.|+|+|+++++++| +++|++++|++|++++|++++.+++ ..++++||+|+|++|
T Consensus 270 ~g~~~~p~~---~~--~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~-~~~~~~IV~v~~d~g 343 (368)
T PLN02556 270 NGVGFKPDI---LD--MDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMP-ENKGKLIVTVHPSFG 343 (368)
T ss_pred ccCCCCccc---cc--hhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhc-cCCcCEEEEEECCCC
Confidence 554443211 11 2344678999999999999987 7899999999999888888887765 346889999999999
Q ss_pred CCchHHH
Q 009957 472 LKFTQSK 478 (521)
Q Consensus 472 ~K~~~~~ 478 (521)
.||.+++
T Consensus 344 ~kY~~~~ 350 (368)
T PLN02556 344 ERYLSSV 350 (368)
T ss_pred cccCChh
Confidence 9999874
No 58
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=2.4e-46 Score=380.58 Aligned_cols=277 Identities=20% Similarity=0.253 Sum_probs=227.3
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.|+|||++++++... .|. +||+|+|++|||||||||++.+++..+.+..+... ...|+++||||||.|+|++|+++|
T Consensus 6 ig~TPl~~~~~l~~~-~g~-~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~-g~~vv~aSsGN~g~alA~~a~~~G 82 (290)
T TIGR01138 6 VGNTPLVRLQRMGPE-NGS-EVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKP-GDVLIEATSGNTGIALAMIAALKG 82 (290)
T ss_pred CCCCceEEccccccC-CCC-eEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCC-CCEEEEECCChHHHHHHHHHHHcC
Confidence 489999999998876 564 89999999999999999999999988754322111 256999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECC--CHHHHHHHHHHHHhcCCccccCCC-ChHhHhh-HHHHHHHHHHhcC
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDT--DFDGCMKLIREVTSELPIYLANSL-NSLRLEG-QKTAAVEILQQFD 319 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G-~~T~a~EI~eQl~ 319 (521)
++|+||+|++ ++..|+.+|+.+||+|+.+++ +++++.+.++++.++.+.++.|++ |+..+++ ++|+++||++|++
T Consensus 83 ~~~~i~~p~~-~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~ 161 (290)
T TIGR01138 83 YRMKLLMPDN-MSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTG 161 (290)
T ss_pred CeEEEEECCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCCCCCccCCcccHHHHhHhHHHHHHHHcC
Confidence 9999999997 789999999999999999987 488898999999888776666765 5665554 6999999999998
Q ss_pred CCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCc
Q 009957 320 WEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPV 399 (521)
Q Consensus 320 ~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~ 399 (521)
+ .+|+||+|+|+||+++|++++|+++ .+.+|||+|||++++++. |. .++.+++. |.
T Consensus 162 ~-~~d~iv~~vG~Gg~~~Gv~~~lk~~------~~~~kvi~Vep~~~~~~~-----g~---------~~~~~~~~---~~ 217 (290)
T TIGR01138 162 G-RITHFVSSMGTTGTIMGVSRFLKEQ------NPPVQIVGLQPEEGSSIP-----GI---------RRWPTEYL---PG 217 (290)
T ss_pred C-CCCEEEECCCchHHHHHHHHHHHHh------CCCCEEEEEeCCCCCCcc-----CC---------CCCCCCcC---Cc
Confidence 5 5899999999999999999988864 257899999999976541 21 11212221 11
Q ss_pred cHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHH
Q 009957 400 SIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQS 477 (521)
Q Consensus 400 ~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~ 477 (521)
.++ ....+.++.|+|+|+++++++| +++|+++||++|+++++++++.++ + ++++||+|+|++|.||.++
T Consensus 218 ~~~------~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~~~~--~-~~~~vv~v~~d~g~ky~~~ 287 (290)
T TIGR01138 218 IFD------ASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRLARE--L-PDAVVVAIICDRGDRYLST 287 (290)
T ss_pred ccC------hhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHHHHH--C-CCCeEEEEECCCCccccCc
Confidence 111 1224578999999999999987 889999999999999999998765 3 5689999999999999875
No 59
>PLN00011 cysteine synthase
Probab=100.00 E-value=5.4e-46 Score=383.41 Aligned_cols=288 Identities=17% Similarity=0.179 Sum_probs=233.3
Q ss_pred ccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHh
Q 009957 162 AFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCAS 241 (521)
Q Consensus 162 l~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~ 241 (521)
..+|+|||++++++... .| .+||+|+|++|||||||||++.+++..+.+..+...+..+|+++|+||||.|+|++|+.
T Consensus 13 ~~~g~TPl~~l~~l~~~-~g-~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~ 90 (323)
T PLN00011 13 ELIGNTPMVYLNNIVDG-CV-ARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAA 90 (323)
T ss_pred HHhCCCceEEccccCCC-CC-ceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHH
Confidence 35799999999987754 34 38999999999999999999999998875433332334679999999999999999999
Q ss_pred cCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHH--HHHHHHHHHHhcC-CccccCCC-ChHh-HhhHHHHHHHHHH
Q 009957 242 AGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFD--GCMKLIREVTSEL-PIYLANSL-NSLR-LEGQKTAAVEILQ 316 (521)
Q Consensus 242 ~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~d--d~~~~~~~~~~~~-~~~~~ns~-Np~~-i~G~~T~a~EI~e 316 (521)
+|++|+||+|++ +++.|+.+++.+||+|+.++++++ ++.+.++++.++. ++++.+++ |+.. ..|++|+++||++
T Consensus 91 ~G~~~~ivvp~~-~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~ 169 (323)
T PLN00011 91 RGYKVILVMPST-MSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWR 169 (323)
T ss_pred cCCeEEEEeCCC-CCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHH
Confidence 999999999997 788999999999999999997643 4566677777764 57777765 4443 3479999999999
Q ss_pred hcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccC
Q 009957 317 QFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIG 396 (521)
Q Consensus 317 Ql~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~ 396 (521)
|+++ .||+||+|+|+||+++|++++|+++ .+.+|||+||+++++++. .++ ...+++++++++
T Consensus 170 q~~~-~~D~iv~~vGtGGt~aGi~~~lk~~------~~~~kvigVe~~~~~~~~----~~~-------~~~~~~~gl~~~ 231 (323)
T PLN00011 170 DSAG-KVDILVAGVGTGGTATGVGKFLKEK------NKDIKVCVVEPVESAVLS----GGQ-------PGPHLIQGIGSG 231 (323)
T ss_pred hcCC-CCCEEEEeCCchHHHHHHHHHHHhh------CCCCEEEEEecCCCcccC----CCC-------CCCCCCCCCCCC
Confidence 9975 6999999999999999999999864 267899999999987763 221 123566777765
Q ss_pred C-CccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCc
Q 009957 397 D-PVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKF 474 (521)
Q Consensus 397 ~-P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~ 474 (521)
. |..+. ....+.++.|+|+|+++++++| +++|+++||++|+++++++++.++.. .++++||+++|++|.||
T Consensus 232 ~~~~~~~------~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~-~~~~~vv~i~~d~G~ky 304 (323)
T PLN00011 232 IIPFNLD------LTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPE-NAGKLIVVIFPSGGERY 304 (323)
T ss_pred CCCcccC------hhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhcc-CCCCeEEEEECCCcccc
Confidence 4 33221 1223568899999999999987 78999999999999999999876543 35779999999999999
Q ss_pred hHH
Q 009957 475 TQS 477 (521)
Q Consensus 475 ~~~ 477 (521)
.++
T Consensus 305 ~~~ 307 (323)
T PLN00011 305 LST 307 (323)
T ss_pred CCh
Confidence 886
No 60
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=3.7e-45 Score=362.53 Aligned_cols=241 Identities=29% Similarity=0.384 Sum_probs=216.4
Q ss_pred CccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCCCE
Q 009957 167 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPS 246 (521)
Q Consensus 167 TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~ 246 (521)
|||++++++.+. .+ .+||+|+|++|||||||||++.+++..+.+..+. +...|+++||||+|.|+|++|+..|++|
T Consensus 1 TPl~~~~~l~~~-~~-~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~--~~~~vv~~ssGN~g~alA~~a~~~g~~~ 76 (244)
T cd00640 1 TPLVRLKRLSKL-GG-ANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL--PKGVIIESTGGNTGIALAAAAARLGLKC 76 (244)
T ss_pred CCeeEccccccc-cC-CEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC--CCCEEEEeCCcHHHHHHHHHHHHcCCCE
Confidence 899999988764 44 4899999999999999999999999887543211 1357999999999999999999999999
Q ss_pred EEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhc-CCccccCC-CChHhHhhHHHHHHHHHHhcCCCCCc
Q 009957 247 IVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSE-LPIYLANS-LNSLRLEGQKTAAVEILQQFDWEVPD 324 (521)
Q Consensus 247 ~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~-~~~~~~ns-~Np~~i~G~~T~a~EI~eQl~~~~pD 324 (521)
+||+|.+ .+..|+.+|+.+||+|+.++++++++.+.+++++++ .+++++|+ .||.+++||+|+++||++|+++..||
T Consensus 77 ~v~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 77 TIVMPEG-ASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EEEECCC-CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999998 689999999999999999999999999999999998 78999998 59999999999999999999964699
Q ss_pred EEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHHHH
Q 009957 325 WVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRA 404 (521)
Q Consensus 325 ~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~ 404 (521)
+||+|+|+||+++|++++|+++. +.+|||+||+
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~------~~~~ii~v~~----------------------------------------- 188 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELL------PNVKVIGVEP----------------------------------------- 188 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhC------CCCEEEEEee-----------------------------------------
Confidence 99999999999999999988642 5789999986
Q ss_pred HHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Q 009957 405 VYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAH 470 (521)
Q Consensus 405 l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~ 470 (521)
.++.|+|+|++++++++ +++|+++||++|++++++.++.+++ .++++||+++||+
T Consensus 189 ---------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~--~~~~~vv~v~tg~ 244 (244)
T cd00640 189 ---------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKL--GKGKTVVVILTGG 244 (244)
T ss_pred ---------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhc--CCCCEEEEEeCCC
Confidence 68899999999999997 7899999999999999999988775 5688999999995
No 61
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.9e-45 Score=375.08 Aligned_cols=292 Identities=27% Similarity=0.351 Sum_probs=236.1
Q ss_pred hcccccCCcccccc-ccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHH
Q 009957 160 VSAFEGNSNLFWAE-RFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAY 238 (521)
Q Consensus 160 vsl~eG~TPL~~~~-~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~ 238 (521)
+++++|+|||++++ ++... .+..+||+|+|++|||||||||++.+++..+.+ .+ .+.|+++|+||||.|+|++
T Consensus 1 i~~~~~~TPl~~~~~~~~~~-~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~---~~--~~~vv~assGN~g~a~A~~ 74 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSE-LGGANIYLKREDLNPTGSFKDRGAYYLLSRAKE---KG--GRTVVGASSGNHGRALAYA 74 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHH-CTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHH---TT--TSEEEEESSSHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchh-ccCCeEEEEECCCCCcCCcccccchhhhhhccc---cc--cceeeeeccCCceehhhhh
Confidence 46889999999975 33322 344599999999999999999999999987543 23 4578999999999999999
Q ss_pred HHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcC-------CccccCC-CChHhHhhHHHH
Q 009957 239 CASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSEL-------PIYLANS-LNSLRLEGQKTA 310 (521)
Q Consensus 239 aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~-------~~~~~ns-~Np~~i~G~~T~ 310 (521)
|+..|++|+||+|++ +++.|+.+++.+|++|+.+.++++++...+++.+++. ... .++ .|+..++|+.++
T Consensus 75 a~~~g~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~ 152 (306)
T PF00291_consen 75 AARLGLKCTIVVPED-VSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE-LNQYNNPNVIAGYATI 152 (306)
T ss_dssp HHHHTCEEEEEEETT-SHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE-ESTTTSHHHHHHHHHH
T ss_pred hhhccccceeeeccc-cccccccceeeecceEEEccccccccccccccccccccccccccccc-cCcccchhhhhhhhhc
Confidence 999999999999998 7899999999999999999887554444444433321 111 333 578899999999
Q ss_pred HHHHHHhcCCCCCcE--EEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccc
Q 009957 311 AVEILQQFDWEVPDW--VIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTT 388 (521)
Q Consensus 311 a~EI~eQl~~~~pD~--VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~T 388 (521)
++||++|++ .||. ||+|+|+||+++|++++|+++ . . +.+|+|+|++.+++++.++++.|.... .+...+
T Consensus 153 ~~Ei~~q~~--~~d~d~vvv~~GtGg~~~Gi~~~~~~~---~-~-~~~~vigv~~~~~~~~~~~~~~g~~~~--~~~~~~ 223 (306)
T PF00291_consen 153 GLEIYEQLG--KPDPDYVVVPVGTGGTAAGIAAGLKEL---I-L-PPVRVIGVEPEGSDPLYRSFKAGKPIR--LPGEST 223 (306)
T ss_dssp HHHHHHHHT--TESESEEEEEESSSHHHHHHHHHHHHH---C-H-TTSEEEEEEETTGHHHHHHHHHTSCEH--SSCHHS
T ss_pred chhcccccc--cccceEEEecCCchhHHHHHHhhhhhh---h-c-ccccceeeeccCCcccccccccccccc--ccceee
Confidence 999999998 6666 999999999999999999875 1 1 578999999999899999999996322 222245
Q ss_pred hhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCC--CCCCeEEE
Q 009957 389 FASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVI--GPLDRTVV 465 (521)
Q Consensus 389 ia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i--~~~~~vV~ 465 (521)
++ +|+.+.|......+.+++++.+.++.|+|+|++++++++ +++|+++||++|+++++++++.+++.+ .++++||+
T Consensus 224 ~~-gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~ 302 (306)
T PF00291_consen 224 IA-GLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVV 302 (306)
T ss_dssp ST-GGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEE
T ss_pred ee-cccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEE
Confidence 55 888777555666778889988899999999999999997 789999999999999999999888766 57899999
Q ss_pred EeCC
Q 009957 466 VSTA 469 (521)
Q Consensus 466 v~TG 469 (521)
|+||
T Consensus 303 v~tG 306 (306)
T PF00291_consen 303 VLTG 306 (306)
T ss_dssp EE-B
T ss_pred EcCC
Confidence 9997
No 62
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=7.9e-45 Score=380.58 Aligned_cols=301 Identities=19% Similarity=0.204 Sum_probs=231.9
Q ss_pred cccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHH
Q 009957 161 SAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA 240 (521)
Q Consensus 161 sl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 240 (521)
.+....|||++++++... +|..+||+|+|++|||||||||++..++..+. +.|.+ ..|+++||||||.|+|++|+
T Consensus 29 ~~~~~~TPL~~l~~l~~~-~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~---~~g~~-~vv~~~ssGN~g~alA~~a~ 103 (365)
T cd06446 29 DYVGRPTPLYRAKRLSEY-LGGAKIYLKREDLNHTGAHKINNALGQALLAK---RMGKK-RVIAETGAGQHGVATATACA 103 (365)
T ss_pred ccCCCCCCceehHHHHHh-hCCceEEEEeccCCCccchhHHHHHHHHHHHH---HcCCC-eEEEecCchHHHHHHHHHHH
Confidence 345579999999999876 65568999999999999999999988877653 34432 23444799999999999999
Q ss_pred hcCCCEEEEccCCcCC--HHhHHhHHhCCCEEEEECC---CHHHHHHHH-HHHHhc--CCccccCC------CChHhHhh
Q 009957 241 SAGIPSIVFLPANKIS--IAQLVQPIANGAFVLSIDT---DFDGCMKLI-REVTSE--LPIYLANS------LNSLRLEG 306 (521)
Q Consensus 241 ~~Gi~~~V~vP~~~~s--~~k~~q~~~~GA~Vi~v~g---~~dd~~~~~-~~~~~~--~~~~~~ns------~Np~~i~G 306 (521)
++|++|+||+|++... +.++.+|+.+||+|+.+++ +++++...+ +...++ ..+|..++ +....++|
T Consensus 104 ~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag 183 (365)
T cd06446 104 LFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDF 183 (365)
T ss_pred HhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHh
Confidence 9999999999986221 2466789999999999985 356665433 333444 23444333 22345899
Q ss_pred HHHHHHHHHHhcCC---CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhh----HHHhhCCcc
Q 009957 307 QKTAAVEILQQFDW---EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLY----LYYKSGWKD 379 (521)
Q Consensus 307 ~~T~a~EI~eQl~~---~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~----~~~~~G~~~ 379 (521)
++|+++||++|+++ ..||+||+|+|+||+++|+++||+. .+.+|||+||+++++++. ..+..|...
T Consensus 184 ~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-------~~~~~vigVep~gs~~~~~~~~~~~~~g~~~ 256 (365)
T cd06446 184 QSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-------DKDVKLIGVEAGGCGLETGGHAAYLFGGTAG 256 (365)
T ss_pred hhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-------CCCceEEEEcCCCCccccccceeeccCCCcc
Confidence 99999999999975 3699999999999999999999875 146899999999988775 234444321
Q ss_pred e---------e----ecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHH
Q 009957 380 F---------K----AVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVAL 445 (521)
Q Consensus 380 ~---------~----~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~al 445 (521)
. . ......|+++++.+.... ...+...+...+.++.|+|+|+++++++| +++|+++||++|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~--~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaal 334 (365)
T cd06446 257 VLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVG--PEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAI 334 (365)
T ss_pred eecchhhhccccccCCCCCcccccccccCCCCC--HHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHH
Confidence 0 0 122446888888764332 33333445667789999999999999997 789999999999999
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeCCCCCCchHH
Q 009957 446 TALIKLRNSGVIGPLDRTVVVSTAHGLKFTQS 477 (521)
Q Consensus 446 Aa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~ 477 (521)
||++++.+++ +++++||+++||+|.||+++
T Consensus 335 Aa~~~~~~~~--~~~~~Vv~i~~g~G~k~~~~ 364 (365)
T cd06446 335 AYAIKLAKKL--GKEKVIVVNLSGRGDKDLQT 364 (365)
T ss_pred HHHHHHHHhc--CCCCeEEEEeCCCCcccccc
Confidence 9999988774 56789999999999999876
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.3e-44 Score=380.92 Aligned_cols=306 Identities=16% Similarity=0.174 Sum_probs=234.6
Q ss_pred hhcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHH
Q 009957 159 IVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAY 238 (521)
Q Consensus 159 ~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~ 238 (521)
+..+...+|||++++++++. +|..+||+|+|++|||||||||++..++..++ +.|.+ ..|+++||||||.|+|++
T Consensus 43 ~~~~~~~~TPL~~~~~l~~~-~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~---~~g~~-~vi~e~ssGN~G~alA~~ 117 (385)
T TIGR00263 43 LRNYAGRPTPLTFAPNLTEA-LGGAKIYLKREDLNHTGAHKINNALGQALLAK---RMGKK-RIIAETGAGQHGVATATA 117 (385)
T ss_pred HHHhCCCCCCceehHHHHHH-hCCCeEEEEeCCCCCCccchHHHHHHHHHHHH---HcCCC-EEEEEcCcHHHHHHHHHH
Confidence 35666779999999999876 66568999999999999999999988777653 34432 345579999999999999
Q ss_pred HHhcCCCEEEEccCCcCCH--HhHHhHHhCCCEEEEECC---CHHHH-HHHHHHHHhcC-C-ccccCCC---ChH---hH
Q 009957 239 CASAGIPSIVFLPANKISI--AQLVQPIANGAFVLSIDT---DFDGC-MKLIREVTSEL-P-IYLANSL---NSL---RL 304 (521)
Q Consensus 239 aa~~Gi~~~V~vP~~~~s~--~k~~q~~~~GA~Vi~v~g---~~dd~-~~~~~~~~~~~-~-~~~~ns~---Np~---~i 304 (521)
|+++|++|+||||+...+. .++.+|+.+||+|+.+++ .++++ .+.+++++++. + +|..+++ +|+ ..
T Consensus 118 a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~ 197 (385)
T TIGR00263 118 AALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVR 197 (385)
T ss_pred HHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHH
Confidence 9999999999999853333 456789999999999974 47776 45555655542 3 3443432 333 25
Q ss_pred hhHHHHHHHHHHhcCC---CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCc----hhhHHHhhCC
Q 009957 305 EGQKTAAVEILQQFDW---EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANAN----PLYLYYKSGW 377 (521)
Q Consensus 305 ~G~~T~a~EI~eQl~~---~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~----~l~~~~~~G~ 377 (521)
+||+|+++||++|+.+ ..||+||+|+|+||+++|++++|.+ ++.+|||+||++++. .....+..|.
T Consensus 198 ~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-------~~~~~iigVe~~gs~~~~~~~~~~~~~g~ 270 (385)
T TIGR00263 198 DFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-------DPSVQLIGVEAGGLGIDTDKHAATLAKGS 270 (385)
T ss_pred HHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-------CCCCeEEEEEeCCCcccchhhhhhhhcCC
Confidence 8999999999999853 3689999999999999999998853 267899999999852 3345555553
Q ss_pred cce-------------eecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHH
Q 009957 378 KDF-------------KAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGV 443 (521)
Q Consensus 378 ~~~-------------~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~ 443 (521)
... .......|+++++++.... +..+...+...+.++.|+|+|+++++++| +++|++++|++|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~--p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaa 348 (385)
T TIGR00263 271 PGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVG--PEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSH 348 (385)
T ss_pred eeEecCcccccccCCCCcccccceeeccccCCCCC--HHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHH
Confidence 110 0123446888888654332 33444444455679999999999999997 7899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHh
Q 009957 444 ALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKID 480 (521)
Q Consensus 444 alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~ 480 (521)
++|+++++.++ +.++++||+++||+|.|+.+.+.+
T Consensus 349 alaa~~~~~~~--l~~~~~Vv~i~~g~G~~d~~~~~~ 383 (385)
T TIGR00263 349 ALAHLEKIAPT--LPKDQIVVVNLSGRGDKDIFTIAK 383 (385)
T ss_pred HHHHHHHHHHh--CCCCCeEEEEeCCCCcCCHHHHHh
Confidence 99999998765 567899999999999999998743
No 64
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=6.1e-44 Score=375.53 Aligned_cols=301 Identities=19% Similarity=0.245 Sum_probs=234.8
Q ss_pred cCCccccccccccccCC-----CCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHH
Q 009957 165 GNSNLFWAERFGKQFLG-----MNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYC 239 (521)
Q Consensus 165 G~TPL~~~~~l~~~~lg-----~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~a 239 (521)
.+|||+++++|++. +| ..+||+|+|++|||||||||++...+..++ ++|++ ..|++.|+||||.|+|++|
T Consensus 65 r~TPL~~~~~Ls~~-~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~---~~g~~-~vIaesgaGNhG~AlA~aa 139 (410)
T PLN02618 65 RETPLYFAERLTEH-YKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAK---RLGKK-RIIAETGAGQHGVATATVC 139 (410)
T ss_pred CCCceeEhhhHHHH-hccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHH---HcCCC-EEEEEcCcHHHHHHHHHHH
Confidence 48999999999886 64 248999999999999999999887766553 44532 4455666999999999999
Q ss_pred HhcCCCEEEEccCCcCC--HHhHHhHHhCCCEEEEE---CCCHHHHH-HHHHHHHhc--CCccccCCC---Ch---HhHh
Q 009957 240 ASAGIPSIVFLPANKIS--IAQLVQPIANGAFVLSI---DTDFDGCM-KLIREVTSE--LPIYLANSL---NS---LRLE 305 (521)
Q Consensus 240 a~~Gi~~~V~vP~~~~s--~~k~~q~~~~GA~Vi~v---~g~~dd~~-~~~~~~~~~--~~~~~~ns~---Np---~~i~ 305 (521)
++.|++|+||||+..+. ..++.+|+.+||+|+.| +++++++. +.+++++++ ..+|..++. +| ...+
T Consensus 140 a~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~ 219 (410)
T PLN02618 140 ARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRD 219 (410)
T ss_pred HHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHH
Confidence 99999999999996322 34556899999999999 77899987 566677765 335554432 33 3469
Q ss_pred hHHHHHHHHHHhc--CC-CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCc----hhhHHHhhCCc
Q 009957 306 GQKTAAVEILQQF--DW-EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANAN----PLYLYYKSGWK 378 (521)
Q Consensus 306 G~~T~a~EI~eQl--~~-~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~----~l~~~~~~G~~ 378 (521)
+|+|++.||.+|+ .+ ..||+||+|+|+||+++|++++|++ ++.+|||+||++++. .....+..|..
T Consensus 220 ~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-------~~~v~ligVEa~G~~~~~~~~~a~l~~g~~ 292 (410)
T PLN02618 220 FHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-------DEDVRLIGVEAAGFGLDSGKHAATLTKGEV 292 (410)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-------CCCceEEEEEeCCCcccccccccchhcCCc
Confidence 9999999998886 11 3799999999999999999999863 468899999999962 22334444422
Q ss_pred c-------------eeecccccchhhhhccCCCccHHHHHHHHHhc-CCeEEEeCHHHHHHHHHHH-HhcCCeeccchHH
Q 009957 379 D-------------FKAVKASTTFASAIQIGDPVSIDRAVYALKNC-NGIVEEATEEELMDAMAQA-DSTGMFICPHTGV 443 (521)
Q Consensus 379 ~-------------~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~-~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~ 443 (521)
. ...+...+|+++|+++.... .. +..++++ .+.++.|+|+|+++|+++| ++|||+++++||+
T Consensus 293 gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvg--p~-~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~ 369 (410)
T PLN02618 293 GVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVG--PE-HSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSH 369 (410)
T ss_pred ceeccccccccccccCCCCCCcchhhhhcCCCCc--HH-HHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHH
Confidence 0 11233457899999875433 33 3455653 4588999999999999998 7899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhh
Q 009957 444 ALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYH 482 (521)
Q Consensus 444 alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~ 482 (521)
++|+++++.++ +.++++||+++||+|.||.+++.++.
T Consensus 370 a~a~a~~~a~~--l~~~~~iVv~lsgrG~Kd~~~v~~~~ 406 (410)
T PLN02618 370 ALAYLEKLCPT--LPDGTKVVVNCSGRGDKDVNTAIKYL 406 (410)
T ss_pred HHHHHHHHhHh--cCCCCEEEEEeCCCCcCCHHHHHHHh
Confidence 99999998875 67889999999999999999986543
No 65
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.1e-43 Score=376.63 Aligned_cols=359 Identities=18% Similarity=0.099 Sum_probs=252.3
Q ss_pred CCcceeccccchhccCChHHHHHhhhhccCCCCCCCCCccccccccccCCCCcchhhcccc-cCCccccccccccccCCC
Q 009957 104 GGLLDVQHDMESLKKFDGAYWRDLFDSRVGKTTWPYGSGVWSKKEWVLPEIDPDDIVSAFE-GNSNLFWAERFGKQFLGM 182 (521)
Q Consensus 104 GGll~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iwr~~~~~lP~~~~~~~vsl~e-G~TPL~~~~~l~~~~lg~ 182 (521)
-.++.+..|+..-..++++.++.++... ....+-+.|||-+ ++++-..-+.. ++|||+++++|.+. +|.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----i~~~v~~~~~~~~~TPL~~~~~L~~~-lg~ 92 (427)
T PRK12391 23 PEPLPPPLDPGTGEPVTPEDLAPIFPME----LIEQEVSTERYID-----IPEEVREIYRLWRPTPLIRARRLEKA-LGT 92 (427)
T ss_pred CCCCCCCCCCCCCCCCCHHHhhhcChHH----HhhccCCcccccC-----ChHHHHHHHcccCCCCeeEchhhHhh-hCC
Confidence 3455555555433333444444333210 0011235687744 22222211344 59999999999876 665
Q ss_pred -CcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEE-eCCchHHHHHHHHHHhcCCCEEEEccCC--cCCHH
Q 009957 183 -NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGC-ASTGDTSAALSAYCASAGIPSIVFLPAN--KISIA 258 (521)
Q Consensus 183 -~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~-aSSGN~g~AlAa~aa~~Gi~~~V~vP~~--~~s~~ 258 (521)
.+||+|+|++|||||||||++..++..+ .+.|. ..+++ +|+||+|.|+|++|+++|++|+||||+. ..++.
T Consensus 93 ~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a---~~~G~--~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~ 167 (427)
T PRK12391 93 PAKIYYKYEGVSPTGSHKPNTAVAQAYYN---KKEGI--KRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPY 167 (427)
T ss_pred CceEEEEEcCCCCCCChHHHHHHHHHHHH---HHCCC--CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHH
Confidence 3899999999999999999997776654 34453 34554 6789999999999999999999999974 23567
Q ss_pred hHHhHHhCCCEEEEECCCHHHH------------------HHHHHHHHhcC-C-ccccCCCChHhHhhHHHHHHHHHHhc
Q 009957 259 QLVQPIANGAFVLSIDTDFDGC------------------MKLIREVTSEL-P-IYLANSLNSLRLEGQKTAAVEILQQF 318 (521)
Q Consensus 259 k~~q~~~~GA~Vi~v~g~~dd~------------------~~~~~~~~~~~-~-~~~~ns~Np~~i~G~~T~a~EI~eQl 318 (521)
|+.+|+.+||+|+.++++++++ ...+.+.+.+. + +|..++.+...++||.++|+||++|+
T Consensus 168 r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~~~~~~~~~ig~Ei~~Ql 247 (427)
T PRK12391 168 RRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLNHVLLHQTVIGLEAKKQL 247 (427)
T ss_pred HHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCcHHHhhHHHHHHHHHHHH
Confidence 7889999999999999887663 33334444432 3 45556544456889999999999999
Q ss_pred CC--CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHh---hCCc-ceeecc--------
Q 009957 319 DW--EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYK---SGWK-DFKAVK-------- 384 (521)
Q Consensus 319 ~~--~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~---~G~~-~~~~~~-------- 384 (521)
.+ ..||+||+|+|+||+++|++++|..++..|. +.+|||+||+++|+++++.+. .|.. ...+..
T Consensus 248 ~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~--~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~lG~~ 325 (427)
T PRK12391 248 ELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGK--KDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTLGHD 325 (427)
T ss_pred HhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCC--CCceEEEEeeccchhhccccccccccccccCCccceeEecCCC
Confidence 73 4699999999999999999999987776664 578999999999999977532 2210 011111
Q ss_pred --cccchhhhhccCCCccHHHHHHHHHh-cCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCC-CC
Q 009957 385 --ASTTFASAIQIGDPVSIDRAVYALKN-CNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVI-GP 459 (521)
Q Consensus 385 --~~~Tia~~i~i~~P~~~~~~l~~l~~-~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i-~~ 459 (521)
...+.+.|+...... ..+..+.+ ....++.|+|+|+++|+++| ++||++++|+||++++|++++.+++.. .+
T Consensus 326 ~~p~~~~a~gl~~~g~~---~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~ 402 (427)
T PRK12391 326 FVPPPIHAGGLRYHGMA---PLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGE 402 (427)
T ss_pred CCCccccccccccCCch---HHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCC
Confidence 122344555432222 22333333 23477899999999999997 789999999999999999998765433 34
Q ss_pred CCeEEEEeCCCCCCchHHHHhhh
Q 009957 460 LDRTVVVSTAHGLKFTQSKIDYH 482 (521)
Q Consensus 460 ~~~vV~v~TG~g~K~~~~~~~~~ 482 (521)
+++||+++||||.++.+...+++
T Consensus 403 ~~~iv~~lsG~G~~d~~~y~~~l 425 (427)
T PRK12391 403 EKVILFNLSGHGLLDLAAYDAYL 425 (427)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHh
Confidence 78999999999999987765443
No 66
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=3.3e-44 Score=386.31 Aligned_cols=292 Identities=17% Similarity=0.179 Sum_probs=231.7
Q ss_pred ccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcC
Q 009957 164 EGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAG 243 (521)
Q Consensus 164 eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~G 243 (521)
.|+|||+++++++.. +|. +||+|+|++|||||||||++.+++..+.+.+....+ ++|+++||||||.|+|++|+++|
T Consensus 9 ~~~TPl~~~~~l~~~-~~~-~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~~~G 85 (454)
T TIGR01137 9 IGNTPLVRLNKVSKG-IKC-ELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAAIKG 85 (454)
T ss_pred cCCCceEEccccCCC-CCc-eEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHHHcC
Confidence 389999999998875 554 899999999999999999999999887543222222 57999999999999999999999
Q ss_pred CCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC--HHHH---HHHHHHHHhc-CCccccCCC-ChHh-HhhHHHHHHHHH
Q 009957 244 IPSIVFLPANKISIAQLVQPIANGAFVLSIDTD--FDGC---MKLIREVTSE-LPIYLANSL-NSLR-LEGQKTAAVEIL 315 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~--~dd~---~~~~~~~~~~-~~~~~~ns~-Np~~-i~G~~T~a~EI~ 315 (521)
++|+||+|++ +++.|+.+++.+||+|+.++++ +++. .+.++++.++ .++++.+++ |+.. ..||+|+|+||+
T Consensus 86 ~~~~iv~p~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~ 164 (454)
T TIGR01137 86 YKCIIVLPEK-MSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEIL 164 (454)
T ss_pred CeEEEEeCCC-cCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHH
Confidence 9999999997 7899999999999999999875 5432 4556666665 355666765 5655 368999999999
Q ss_pred HhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhcc
Q 009957 316 QQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQI 395 (521)
Q Consensus 316 eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i 395 (521)
+|+++ .||+||+|+|+||+++|++++|++. .+.+|||+||++++. +. .+.. ........+.+++++.
T Consensus 165 ~q~~~-~~d~vv~~vG~Gg~~~G~~~~~~~~------~~~~~vi~ve~~~~~-~~----~~~~-~~~~~~~~~~~~g~~~ 231 (454)
T TIGR01137 165 EQCEG-KLDMFVAGAGTGGTITGIARYLKES------NPKCRIVGADPEGSI-LA----QPEN-LNKTGRTPYKVEGIGY 231 (454)
T ss_pred HHhCC-CCCEEEEecCchHHHHHHHHHHHhh------CCCCEEEEEecCCCc-cc----CCCc-ccCCCCCCccCCCCCC
Confidence 99985 6999999999999999999998863 267899999999854 22 2210 1101111355666664
Q ss_pred C-CCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC
Q 009957 396 G-DPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLK 473 (521)
Q Consensus 396 ~-~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K 473 (521)
. .|... .++..+.++.|+|+|++++++++ +++|+++||+||++++|++++.++ .+.++++||+++|++|.|
T Consensus 232 ~~~~~~~------~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~-~~~~~~~vv~~~~d~g~~ 304 (454)
T TIGR01137 232 DFIPTVL------DRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAED-ELTEDQVIVVLLPDSIRN 304 (454)
T ss_pred CCCCCcC------CchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHh-hcCCCCEEEEEECCCCcc
Confidence 4 22211 13456778999999999999997 789999999999999999998775 467788999999999999
Q ss_pred chHHHH
Q 009957 474 FTQSKI 479 (521)
Q Consensus 474 ~~~~~~ 479 (521)
|.++++
T Consensus 305 y~~~~~ 310 (454)
T TIGR01137 305 YMTKFL 310 (454)
T ss_pred ccCccc
Confidence 987653
No 67
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-44 Score=359.67 Aligned_cols=293 Identities=19% Similarity=0.264 Sum_probs=256.7
Q ss_pred cCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCC
Q 009957 165 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGI 244 (521)
Q Consensus 165 G~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi 244 (521)
-.|||.+.-.|++. +|+ ++|+|+|+++||||||.||+.+++..+.+. ++ ..+|+++|.||||.|+|+.|+++|+
T Consensus 65 ~~TPl~~s~~lS~~-~g~-~vyLK~E~lQpsgSFK~RGa~~~~~kla~~---~~-~~gViasSaGNha~a~Ayaa~~Lgi 138 (457)
T KOG1250|consen 65 VETPLLKSVALSKK-AGM-PVYLKREDLQPSGSFKIRGAGNALQKLAKQ---QK-KAGVIASSAGNHAQAAAYAARKLGI 138 (457)
T ss_pred ecccchhhhhhhhh-cCC-ceEEEehhcccccceehhhHHHHHHHHHHh---hh-cCceEEecCccHHHHHHHHHHhcCC
Confidence 35899887777776 777 899999999999999999999999876432 21 3579999999999999999999999
Q ss_pred CEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCC-ChHhHhhHHHHHHHHHHhcCCCCC
Q 009957 245 PSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSL-NSLRLEGQKTAAVEILQQFDWEVP 323 (521)
Q Consensus 245 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~-Np~~i~G~~T~a~EI~eQl~~~~p 323 (521)
+++|+||.. ++..|.+.++.+||+|+..+.++|++...+++++++.++.++|++ +|..++||.|++.||.+|+.. .+
T Consensus 139 paTIVmP~~-tp~~kiq~~~nlGA~Vil~G~~~deAk~~a~~lAke~gl~yI~pfDhP~I~aGqgTig~EIl~ql~~-~~ 216 (457)
T KOG1250|consen 139 PATIVMPVA-TPLMKIQRCRNLGATVILSGEDWDEAKAFAKRLAKENGLTYIPPFDHPDIWAGQGTIGLEILEQLKE-PD 216 (457)
T ss_pred ceEEEecCC-ChHHHHHHHhccCCEEEEecccHHHHHHHHHHHHHhcCceecCCCCCchhhcCcchHHHHHHHhhcC-CC
Confidence 999999997 688888889999999999999999999999999999999999997 688999999999999999983 34
Q ss_pred cEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHHH
Q 009957 324 DWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDR 403 (521)
Q Consensus 324 D~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~ 403 (521)
++|+||+|+||+++|+..|++ +.| |..+||||++++|+.+..+++.|+ ....+...|+|+|+++. .-.++
T Consensus 217 ~AI~vpVGGGGLiaGIat~vk---~~~---p~vkIIGVEt~~a~~f~~sl~~g~--~V~lp~i~s~AdglaV~--~Vg~~ 286 (457)
T KOG1250|consen 217 GAIVVPVGGGGLIAGIATGVK---RVG---PHVKIIGVETEGAHSFNASLKAGK--PVTLPKITSLADGLAVK--TVGEN 286 (457)
T ss_pred CeEEEecCCchhHHHHHHHHH---HhC---CCCceEEEeecCcHHHHHHHhcCC--eeecccccchhcccccc--hhhHH
Confidence 599999999999999999765 455 477999999999999999999995 56677788999999864 45577
Q ss_pred HHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHH
Q 009957 404 AVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQS 477 (521)
Q Consensus 404 ~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~ 477 (521)
.++..+...+.++.|+|+||..|++++ +.+.+++||++|+++||.....-.. .+++++|.+++|++..+...
T Consensus 287 tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~~~~~--lk~~~vv~ilsG~n~~~~~L 359 (457)
T KOG1250|consen 287 TFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSGKLNH--LKGKKVVSILSGGNIDFDSL 359 (457)
T ss_pred HHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhccccc--cCCceEEeecccCCCCcccc
Confidence 888889999999999999999999986 9999999999999999988862221 36788999999999987643
No 68
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.8e-43 Score=370.36 Aligned_cols=303 Identities=18% Similarity=0.192 Sum_probs=233.5
Q ss_pred hcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHH
Q 009957 160 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYC 239 (521)
Q Consensus 160 vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~a 239 (521)
..+....|||++++++++. +|..+||+|+|++|||||||||.+...+..++ ++|++ ..|+++|+||||.|+|++|
T Consensus 56 ~~~~g~pTPL~~~~~Ls~~-~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~---~~G~~-~vI~etgsGnhG~A~A~aa 130 (402)
T PRK13028 56 KHYVGRPTPLYHAKRLSEE-LGGAQIYLKREDLNHTGAHKINNCLGQALLAK---RMGKK-RLIAETGAGQHGVATATAA 130 (402)
T ss_pred HHhCCCCCCeeehHHhHhh-cCCCeEEEEECCCCCCcchHHHHHHHHHHHHH---HcCCC-eEEEecCcHHHHHHHHHHH
Confidence 3455568999999999887 75568999999999999999999987776653 45543 4566789999999999999
Q ss_pred HhcCCCEEEEccCCcCCH--HhHHhHHhCCCEEEEECC---CHHHHHHHH-HHHHhcC--CccccCCC---ChH---hHh
Q 009957 240 ASAGIPSIVFLPANKISI--AQLVQPIANGAFVLSIDT---DFDGCMKLI-REVTSEL--PIYLANSL---NSL---RLE 305 (521)
Q Consensus 240 a~~Gi~~~V~vP~~~~s~--~k~~q~~~~GA~Vi~v~g---~~dd~~~~~-~~~~~~~--~~~~~ns~---Np~---~i~ 305 (521)
+++|++|+||||+..++. .++.+|+.+||+|+.|+. +++++.+.+ +++.++. .+|..++. +|+ ..+
T Consensus 131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~ 210 (402)
T PRK13028 131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD 210 (402)
T ss_pred HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence 999999999999864432 345689999999999984 788887766 4455542 34544432 333 246
Q ss_pred hHHHHHHHHHHhcC---CCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCC--------CchhhHHHh
Q 009957 306 GQKTAAVEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAAN--------ANPLYLYYK 374 (521)
Q Consensus 306 G~~T~a~EI~eQl~---~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~--------~~~l~~~~~ 374 (521)
||+|+++||.+|+. +..||+||+|+|+||+++|++++|++ ++.+|||+||+.+ ++++.
T Consensus 211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-------~~~v~iigVE~~G~~~~~~~~aa~l~---- 279 (402)
T PRK13028 211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-------DESVRLVGVEPAGRGLDLGEHAATLT---- 279 (402)
T ss_pred HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-------CCCceEEEEecCCCCccccccccccc----
Confidence 99999999999974 24799999999999999999999964 2678999999998 55553
Q ss_pred hCCcc-------e--e----ecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccc
Q 009957 375 SGWKD-------F--K----AVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPH 440 (521)
Q Consensus 375 ~G~~~-------~--~----~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePs 440 (521)
.|... + . .....+|++.|+++..+. ....+......+.++.|+|+|+++|+++| ++|||+++++
T Consensus 280 ~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vg--p~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~ 357 (402)
T PRK13028 280 LGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVG--PEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALE 357 (402)
T ss_pred CCCcceecccceeeccccCCCcCCccceeccccCCCCC--HHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccH
Confidence 33210 0 0 012246888888754432 33333333334578999999999999998 7899999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhh
Q 009957 441 TGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYH 482 (521)
Q Consensus 441 sA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~ 482 (521)
||+++|+++++.++ +.++++||+++||+|.|+.+++.+++
T Consensus 358 sa~alA~a~~~a~~--l~~~~~VVv~lsG~G~kd~~~~~~~~ 397 (402)
T PRK13028 358 SSHAVAYAIKLAPE--LSKDETILVNLSGRGDKDIDYVAEML 397 (402)
T ss_pred HHHHHHHHHHhhhh--cCCCCeEEEEECCCCccCHHHHHHHh
Confidence 99999999998765 56789999999999999999886543
No 69
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2.9e-43 Score=369.73 Aligned_cols=306 Identities=17% Similarity=0.212 Sum_probs=233.2
Q ss_pred cccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHH
Q 009957 161 SAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA 240 (521)
Q Consensus 161 sl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 240 (521)
.+....|||++++++++. +|..+||+|+|++|||||||||++...+..++ ++|++ +.|+++|+||||.|+|++|+
T Consensus 53 ~~~grpTPL~~~~~Ls~~-~gg~~IylK~EdlnptGS~K~r~al~~~l~A~---~~Gk~-~vIaetgaGnhG~A~A~~aa 127 (397)
T PRK04346 53 NYVGRPTPLYFAERLSEH-LGGAKIYLKREDLNHTGAHKINNVLGQALLAK---RMGKK-RIIAETGAGQHGVATATAAA 127 (397)
T ss_pred HhcCCCCCceEhHHHHHH-cCCCeEEEEECCCCCccchHHHHHHHHHHHHH---HcCCC-eEEEecCcHHHHHHHHHHHH
Confidence 344457999999999987 76568999999999999999999988776653 45543 45666899999999999999
Q ss_pred hcCCCEEEEccCCcCCH--HhHHhHHhCCCEEEEECC---CHHHHHH-HHHHHHhc--CCccccCCC---ChHh---Hhh
Q 009957 241 SAGIPSIVFLPANKISI--AQLVQPIANGAFVLSIDT---DFDGCMK-LIREVTSE--LPIYLANSL---NSLR---LEG 306 (521)
Q Consensus 241 ~~Gi~~~V~vP~~~~s~--~k~~q~~~~GA~Vi~v~g---~~dd~~~-~~~~~~~~--~~~~~~ns~---Np~~---i~G 306 (521)
++|++|+||||+..++. .++.+|+.+||+|+.|+. +++++.. ..+++.++ ..+|..++. +|+. .+|
T Consensus 128 ~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~ 207 (397)
T PRK04346 128 LLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDF 207 (397)
T ss_pred HcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHh
Confidence 99999999999864442 355679999999999984 6776644 44455654 334554433 4443 579
Q ss_pred HHHHHHHHHHhcCC---CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCc----hhhHHHhhCCcc
Q 009957 307 QKTAAVEILQQFDW---EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANAN----PLYLYYKSGWKD 379 (521)
Q Consensus 307 ~~T~a~EI~eQl~~---~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~----~l~~~~~~G~~~ 379 (521)
|+|++.||++|+.+ +.||+||+|+|+||+++|++++|.+ ++.+|||+||+.++. .....+..|...
T Consensus 208 q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-------~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g 280 (397)
T PRK04346 208 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-------DESVRLIGVEAAGKGLETGKHAATLTKGRPG 280 (397)
T ss_pred cchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-------CCCCeEEEEecCCCccccccccchhhcCCee
Confidence 99999999999853 4799999999999999999999863 478899999999852 223344444311
Q ss_pred -------e------eecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHH
Q 009957 380 -------F------KAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVAL 445 (521)
Q Consensus 380 -------~------~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~al 445 (521)
+ ..+...++++.|++...+. +......+.....++.|+|+|+++|+++| ++|||++++++|.++
T Consensus 281 ~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvg--p~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~Al 358 (397)
T PRK04346 281 VLHGAKTYLLQDEDGQILETHSISAGLDYPGVG--PEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHAL 358 (397)
T ss_pred eeccccceecccCCCccCCCceeeccccCCCCC--HHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHH
Confidence 0 0123457888888754433 33333333333478899999999999998 789999999999999
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhh
Q 009957 446 TALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYH 482 (521)
Q Consensus 446 Aa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~ 482 (521)
|+++++.+. +.++++||+++||+|.||.+++.++.
T Consensus 359 A~a~kla~~--l~~~~~Vvv~lsGrG~kd~~~~~~~~ 393 (397)
T PRK04346 359 AYALKLAPT--LGKDQIIVVNLSGRGDKDVFTVAKLL 393 (397)
T ss_pred HHHHHhhhh--cCCCCeEEEEeCCCCccCHHHHHHHh
Confidence 999988654 56788999999999999999886543
No 70
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=348.19 Aligned_cols=281 Identities=21% Similarity=0.236 Sum_probs=231.4
Q ss_pred cCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCC
Q 009957 165 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGI 244 (521)
Q Consensus 165 G~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi 244 (521)
|+|||+++.++... .+ .++|+|+|++||+||.|||.+.+|+..++..++...+ .+||++||||||.+||+.|+..|+
T Consensus 10 G~TPlvrL~~~~~~-~~-~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~vaa~~Gy 86 (300)
T COG0031 10 GNTPLVRLNRLSPG-TG-VEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVAAAKGY 86 (300)
T ss_pred CCCCcEeecccCCC-CC-ceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHHHHHcCC
Confidence 99999999998765 33 3899999999999999999999999988764444333 589999999999999999999999
Q ss_pred CEEEEccCCcCCHHhHHhHHhCCCEEEEECC--C-HHHHHHHHHHHHhcC-C-ccccCCC-ChHhH-hhHHHHHHHHHHh
Q 009957 245 PSIVFLPANKISIAQLVQPIANGAFVLSIDT--D-FDGCMKLIREVTSEL-P-IYLANSL-NSLRL-EGQKTAAVEILQQ 317 (521)
Q Consensus 245 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~-~dd~~~~~~~~~~~~-~-~~~~ns~-Np~~i-~G~~T~a~EI~eQ 317 (521)
+++++||++ +|.+++.+|++|||+|+.+++ . +..+.+.+++++++. + +++.|++ ||.+. .++.|++.||++|
T Consensus 87 ~~iivmP~~-~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~ 165 (300)
T COG0031 87 RLIIVMPET-MSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQ 165 (300)
T ss_pred cEEEEeCCC-CCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHH
Confidence 999999997 899999999999999999985 3 667888888888877 3 5566564 77764 4466999999999
Q ss_pred cCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCC
Q 009957 318 FDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGD 397 (521)
Q Consensus 318 l~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~ 397 (521)
++. .+|+||..+|+||+++|+.+.||+ .+|..|+|+|||+++..+.. |. .+....||+.+.
T Consensus 166 ~~g-~~d~fVagvGTGGTitGvar~Lk~------~~p~i~iv~vdP~~S~~~~~----G~--------g~~~i~GIG~~~ 226 (300)
T COG0031 166 TDG-KVDAFVAGVGTGGTITGVARYLKE------RNPNVRIVAVDPEGSVLLSG----GE--------GPHKIEGIGAGF 226 (300)
T ss_pred hCC-CCCEEEEeCCcchhHHHHHHHHHh------hCCCcEEEEECCCCCcccCC----CC--------CCcccCCCCCCc
Confidence 985 599999999999999999997665 23678999999999554432 31 233345665443
Q ss_pred -CccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 398 -PVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 398 -P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
|.++ ..+..+.++.|+|+|.++++++| ++||+++++||+++++|++++.++ +.++.+||++++++|.||.
T Consensus 227 ip~~~------~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~--~~~g~~IVti~pD~G~RYl 298 (300)
T COG0031 227 VPENL------DLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKLAKE--LPAGKTIVTILPDSGERYL 298 (300)
T ss_pred CCccc------ccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHh--cCCCCeEEEEECCCccccc
Confidence 3222 23456889999999999999997 899999999999999999998877 4568999999999999986
Q ss_pred H
Q 009957 476 Q 476 (521)
Q Consensus 476 ~ 476 (521)
+
T Consensus 299 s 299 (300)
T COG0031 299 S 299 (300)
T ss_pred C
Confidence 4
No 71
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-43 Score=334.11 Aligned_cols=286 Identities=18% Similarity=0.273 Sum_probs=247.4
Q ss_pred CCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCCC
Q 009957 166 NSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIP 245 (521)
Q Consensus 166 ~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~ 245 (521)
.||.+.++.+... +| .++|+|.|.++.|||||.||+.+.++.+... + +.++|++.||||||+|+|+.|+..||+
T Consensus 25 kTpVlTS~~ln~~-~g-~~vfFKcE~fQKtGaFKfRGAlNav~~l~~e-k---~~kgvithSSGNHaqAlalaAk~~giP 98 (323)
T KOG1251|consen 25 KTPVLTSENLNEK-VG-RHVFFKCENFQKTGAFKFRGALNAVSSLKAE-K---RAKGVITHSSGNHAQALALAAKILGIP 98 (323)
T ss_pred cCceechhhHHHH-hh-hheEeehhhhhhccceehhhhHHHHHHhhHh-h---hcCceEeecCCcHHHHHHHHHHhcCCC
Confidence 3566666767665 55 4899999999999999999999999987632 1 245799999999999999999999999
Q ss_pred EEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCC-hHhHhhHHHHHHHHHHhcCCCCCc
Q 009957 246 SIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLN-SLRLEGQKTAAVEILQQFDWEVPD 324 (521)
Q Consensus 246 ~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~N-p~~i~G~~T~a~EI~eQl~~~~pD 324 (521)
++|+||++ .+..|+..++.||++|+.++.+-++....++++.++.+++.++++| |..+.||.|+++|++||.+ ..|
T Consensus 99 a~IVvP~~-AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg--~iD 175 (323)
T KOG1251|consen 99 ATIVVPKD-APICKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHPYNHPSVIAGQGTIALELLEQVG--EID 175 (323)
T ss_pred eEEEecCC-ChHHHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCCCCCcceeeccchHHHHHHHhhC--ccc
Confidence 99999998 5889999999999999999999899999999999999999999987 5679999999999999998 789
Q ss_pred EEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHHHH
Q 009957 325 WVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRA 404 (521)
Q Consensus 325 ~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~ 404 (521)
.+|||+|+||+++|...+.+. +.|..++++|||++++.-.++|.+|. +..++.++|||||.+...-.+. .
T Consensus 176 alfvpvgGGGllSgvAlaa~~------l~P~i~vy~veP~~a~d~~qsf~~g~--I~~l~tp~TIADG~r~~~lG~~--t 245 (323)
T KOG1251|consen 176 ALFVPVGGGGLLSGVALAAKS------LKPSIEVYAVEPEAADDGQQSFLKGK--IVHLDTPKTIADGVRTSHLGPL--T 245 (323)
T ss_pred eEEEeecCcchhhHHHHHHhc------cCCCcEEEEecCcccchHHHHHhcCC--eEecCCchhhhhhhhhcccccc--c
Confidence 999999999999999854432 34788999999999999999999984 6778999999999986532222 3
Q ss_pred HHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC
Q 009957 405 VYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVSTAHGLK 473 (521)
Q Consensus 405 l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K 473 (521)
+-.+++..+.+++|+|+|+.++++.+ ++..+.+||+++.++||++...++- ..+++.++++|++..
T Consensus 246 ~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~---~~K~igIiLsGGNVD 312 (323)
T KOG1251|consen 246 WPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFAL---NIKRIGIILSGGNVD 312 (323)
T ss_pred hHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHHh---ccCceEEEEeCCccc
Confidence 45578888889999999999999985 8999999999999999988766553 367999999998765
No 72
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=5.3e-42 Score=355.83 Aligned_cols=288 Identities=16% Similarity=0.149 Sum_probs=229.5
Q ss_pred hcccccCCccccccccccccCCC-CcEEEecCCCCCC---CChhHHHHHHHHHHHHHHHhcCCCceEEEEe--CCchHHH
Q 009957 160 VSAFEGNSNLFWAERFGKQFLGM-NDLWVKHCGISHT---GSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA--STGDTSA 233 (521)
Q Consensus 160 vsl~eG~TPL~~~~~l~~~~lg~-~~l~vK~E~~nPT---GSfKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~ 233 (521)
+.|.+|+|||++++++... +|+ .+||+|+|++||| ||+|||.+..++..+. +.| ..+|+++ |+||||.
T Consensus 9 ~~l~~g~TPL~~~~~l~~~-~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~---~~G--~~~vvs~G~s~GN~g~ 82 (337)
T PRK12390 9 YPLTFGPTPIHPLKRLSAH-LGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDAL---AQG--ADTLVSIGGVQSNHTR 82 (337)
T ss_pred cccCCCCCcceeHHHHHHH-hCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHH---HcC--CCEEEEeCCCccHHHH
Confidence 5789999999999988776 675 4899999999998 7779999988888764 344 4677776 8899999
Q ss_pred HHHHHHHhcCCCEEEEccCCcCC--------HHhHHhHHhCCCEEEEECCCHH----HHHHHHHHHHhc-CC-ccccC--
Q 009957 234 ALSAYCASAGIPSIVFLPANKIS--------IAQLVQPIANGAFVLSIDTDFD----GCMKLIREVTSE-LP-IYLAN-- 297 (521)
Q Consensus 234 AlAa~aa~~Gi~~~V~vP~~~~s--------~~k~~q~~~~GA~Vi~v~g~~d----d~~~~~~~~~~~-~~-~~~~n-- 297 (521)
|+|++|+++|++|+||+|.. ++ ..++.+++.+||+|+.++++++ ++.+.+.+..++ .+ .|..+
T Consensus 83 alA~aa~~~G~~~~iv~~~~-~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T PRK12390 83 QVAAVAAHLGMKCVLVQENW-VNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAG 161 (337)
T ss_pred HHHHHHHHcCCeEEEEeCCC-CCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCc
Confidence 99999999999999997664 22 2356689999999999998764 555555555554 33 33232
Q ss_pred -CCChHhHhhHHHHHHHHHHh---cCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHH
Q 009957 298 -SLNSLRLEGQKTAAVEILQQ---FDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYY 373 (521)
Q Consensus 298 -s~Np~~i~G~~T~a~EI~eQ---l~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~ 373 (521)
..+|+..+|++++++||++| +++ .||+||+|+|+||+++|++++|+++ ++.+|||+||++++.++...-
T Consensus 162 ~~~~~~~~~G~~~~a~Ei~~q~~~~~~-~~d~vvv~vGtGgtlaGi~~~~k~~------~~~~rvigV~~~~~~~~~~~~ 234 (337)
T PRK12390 162 ASDHPLGGLGFVGFAEEVRAQEAELGF-KFDYIVVCSVTGSTQAGMVVGFAAD------GRARRVIGIDASAKPEQTRAQ 234 (337)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCC-CCCEEEEecCcchhHHHHHHHHHhc------CCCceEEEEEecCchHHHHHH
Confidence 23577889999999999998 553 6999999999999999999998863 357899999999987775431
Q ss_pred hhCCcceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccc-hHHHHHHHHHH
Q 009957 374 KSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPH-TGVALTALIKL 451 (521)
Q Consensus 374 ~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePs-sA~alAa~~~l 451 (521)
+. ....+++++++++.|..... +...+++.|..+.|+|+|++++++++ +++|+++||+ ||++++|++++
T Consensus 235 ------~~--~~~~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~ 305 (337)
T PRK12390 235 ------VL--RIARNTAELVELGRDITEDD-VVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDL 305 (337)
T ss_pred ------HH--HHHHHHHHHhCCCCCCChhh-EEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence 11 12356777887776543332 22345677889999999999999997 7899999995 99999999999
Q ss_pred HhcCCCCCCCeEEEEeCCC
Q 009957 452 RNSGVIGPLDRTVVVSTAH 470 (521)
Q Consensus 452 ~~~g~i~~~~~vV~v~TG~ 470 (521)
.+++.+.++++||+++||+
T Consensus 306 ~~~g~~~~~~~vv~~htgg 324 (337)
T PRK12390 306 VRKGEFPEGSKVLYAHLGG 324 (337)
T ss_pred HhcCCCCCCCeEEEEeCCC
Confidence 9999999999999999997
No 73
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1e-40 Score=368.83 Aligned_cols=302 Identities=19% Similarity=0.198 Sum_probs=230.3
Q ss_pred cc-CCccccccccccc---cCCC-CcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHH
Q 009957 164 EG-NSNLFWAERFGKQ---FLGM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAY 238 (521)
Q Consensus 164 eG-~TPL~~~~~l~~~---~lg~-~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~ 238 (521)
.| +|||+++++|+.. .+|. .+||+|+|++|||||||||++..++..++ +.|+. ++|+++||||||.|+|++
T Consensus 323 iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~---~~G~~-~~IvetssGNhG~AlA~a 398 (695)
T PRK13802 323 VGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVK---RMGKT-RVIAETGAGQHGVATATV 398 (695)
T ss_pred CCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHH---HcCCC-CEEEEECcHHHHHHHHHH
Confidence 45 9999999988642 1453 48999999999999999999999888764 34543 578899999999999999
Q ss_pred HHhcCCCEEEEccCCc--CCHHhHHhHHhCCCEEEEECC---CHHHHH-HHHHHHHhcC--CccccCCC---ChH---hH
Q 009957 239 CASAGIPSIVFLPANK--ISIAQLVQPIANGAFVLSIDT---DFDGCM-KLIREVTSEL--PIYLANSL---NSL---RL 304 (521)
Q Consensus 239 aa~~Gi~~~V~vP~~~--~s~~k~~q~~~~GA~Vi~v~g---~~dd~~-~~~~~~~~~~--~~~~~ns~---Np~---~i 304 (521)
|+++|++|+||||+.. .+..++.+|+.+||+|+.|++ +++++. +.+++++++. .+|+.+++ ||+ ..
T Consensus 399 aA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~ 478 (695)
T PRK13802 399 CAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVR 478 (695)
T ss_pred HHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHH
Confidence 9999999999999852 356788999999999999983 467774 4556666542 34555543 343 56
Q ss_pred hhHHHHHHHHHHhcCC----CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhH--HH--hh-
Q 009957 305 EGQKTAAVEILQQFDW----EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYL--YY--KS- 375 (521)
Q Consensus 305 ~G~~T~a~EI~eQl~~----~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~--~~--~~- 375 (521)
+||+|+|+||++|+.. ..||+||+|+|+||+++|++++|++ ++.+||||||+.++.+... .. ..
T Consensus 479 agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-------~~~vkligVE~~g~g~~~g~h~~~~~~g 551 (695)
T PRK13802 479 DFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-------DERVNLYGYEAGGNGPESGKHAIRFAPG 551 (695)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-------CCCceEEEEEecCCCccccchhhhhhhc
Confidence 9999999999999953 2699999999999999999999964 3678999999999764421 11 11
Q ss_pred -CC-------cceeecc------cccchhhhhc---cCCCccHHHHHHHHHhcCC-eEEEeCHHHHHHHHHHH-HhcCCe
Q 009957 376 -GW-------KDFKAVK------ASTTFASAIQ---IGDPVSIDRAVYALKNCNG-IVEEATEEELMDAMAQA-DSTGMF 436 (521)
Q Consensus 376 -G~-------~~~~~~~------~~~Tia~~i~---i~~P~~~~~~l~~l~~~~g-~~v~Vsd~Ei~~A~~~l-~~eGi~ 436 (521)
|. ..+.+.. ..++++.||+ |+.+. ..++..+. ..+.|+|+|+++|.++| ++|||+
T Consensus 552 ~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~------~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIi 625 (695)
T PRK13802 552 TGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEH------AWLKDIGRVNYSWATDEEAMNAFKDLCETEGII 625 (695)
T ss_pred cCCccccccceeecccCCCCCccCccccccccCCCCCCchh------HHHHhcCCeEEEEECHHHHHHHHHHHHHHcCcc
Confidence 21 1121111 2357777887 44332 22344333 23799999999999998 789999
Q ss_pred eccchHHHHHHHHHHHhcCCCC--CCCeEEEEeCCCCCCchHHHHhhh
Q 009957 437 ICPHTGVALTALIKLRNSGVIG--PLDRTVVVSTAHGLKFTQSKIDYH 482 (521)
Q Consensus 437 ~ePssA~alAa~~~l~~~g~i~--~~~~vV~v~TG~g~K~~~~~~~~~ 482 (521)
++|+||+|+|+++++.++.... .+++||+++||+|.||.+++.++.
T Consensus 626 pa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~~~~ 673 (695)
T PRK13802 626 PAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTAGKWF 673 (695)
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHHHHHh
Confidence 9999999999999988753211 256899999999999999986654
No 74
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=1.8e-41 Score=350.96 Aligned_cols=290 Identities=17% Similarity=0.167 Sum_probs=226.2
Q ss_pred hcccccCCccccccccccccCCCCcEEEecCCCCCC--CChhHHHHHHHHHHHHHHHhcCCCceEEEEe--CCchHHHHH
Q 009957 160 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHT--GSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA--STGDTSAAL 235 (521)
Q Consensus 160 vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPT--GSfKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~Al 235 (521)
+++.+|+|||++++.+.+. +|. +||+|+|++||+ ||||||++..++..+. +.| .+.|+++ |+||||.|+
T Consensus 9 ~~~~~~~TPl~~~~~l~~~-~g~-~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~---~~g--~~~vvt~g~s~gN~g~al 81 (331)
T PRK03910 9 LELAGLPTPLEPLPRLSAA-LGP-DIYIKRDDLTGLALGGNKTRKLEFLLADAL---AQG--ADTLITAGAIQSNHARQT 81 (331)
T ss_pred ccccCCCCCceEhhhhhHh-hCC-cEEEEeccCCCCCCCchHHHHHHHHHHHHH---HcC--CCEEEEcCcchhHHHHHH
Confidence 5788999999999988775 565 899999999997 5999999999888754 334 3567775 358999999
Q ss_pred HHHHHhcCCCEEEEccCCcCCH--------HhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhcCC-cccc-C-CCCh
Q 009957 236 SAYCASAGIPSIVFLPANKISI--------AQLVQPIANGAFVLSIDTD---FDGCMKLIREVTSELP-IYLA-N-SLNS 301 (521)
Q Consensus 236 Aa~aa~~Gi~~~V~vP~~~~s~--------~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~~~-~~~~-n-s~Np 301 (521)
|++|+.+|++|+||+|.+ .+. .++.+++.+||+|+.++++ .+.+.+.++++.++.+ .|.. + ..|+
T Consensus 82 A~~a~~~G~~~~i~vp~~-~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 82 AAAAAKLGLKCVLLLENP-VPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHhCCcEEEEEcCC-CCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 999999999999999997 443 3457899999999999875 2223445556655543 3322 2 3589
Q ss_pred HhHhhHHHHHHHHHHhcCCC--CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcc
Q 009957 302 LRLEGQKTAAVEILQQFDWE--VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKD 379 (521)
Q Consensus 302 ~~i~G~~T~a~EI~eQl~~~--~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~ 379 (521)
+..+|++|+++||++|+++. .||+||+|+|+||+++|++++|+++ + +..++|+||+++++.+.....
T Consensus 161 ~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~---~---~~~~vigVe~~~~~~~~~~~~----- 229 (331)
T PRK03910 161 LGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAAL---G---PDIPVIGVTVSRSAAEQEPKV----- 229 (331)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh---C---CCCeEEEEEecCCHHHHHHHH-----
Confidence 99999999999999999752 6999999999999999999998753 2 457999999998766543211
Q ss_pred eeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccc-hHHHHHHHHHHHhcCCC
Q 009957 380 FKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPH-TGVALTALIKLRNSGVI 457 (521)
Q Consensus 380 ~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePs-sA~alAa~~~l~~~g~i 457 (521)
.....+++++++++.+.. ...+..++++.+.++.|+|+|++++++++ +++|+++||+ +|+++++++++.+++.+
T Consensus 230 ---~~~~~~~a~~~g~~~~~~-~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~ 305 (331)
T PRK03910 230 ---AKLAQATAELLGLPTEIP-RADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRF 305 (331)
T ss_pred ---HHHHHHHHHHcCCCccCC-cccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCC
Confidence 112245666665542111 12233456777888999999999999997 7899999995 99999999999888777
Q ss_pred CCCCeEEEEeCCCCC
Q 009957 458 GPLDRTVVVSTAHGL 472 (521)
Q Consensus 458 ~~~~~vV~v~TG~g~ 472 (521)
.++++||+++||+..
T Consensus 306 ~~~~~Vv~i~tGG~~ 320 (331)
T PRK03910 306 KKGGNVLFIHTGGAP 320 (331)
T ss_pred CCCCeEEEEECCChH
Confidence 778899999999865
No 75
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=4.2e-41 Score=349.12 Aligned_cols=289 Identities=16% Similarity=0.116 Sum_probs=227.0
Q ss_pred hcccccCCccccccccccccCCC-CcEEEecCCCCCC---CChhHHHHHHHHHHHHHHHhcCCCceEEEEe--CCchHHH
Q 009957 160 VSAFEGNSNLFWAERFGKQFLGM-NDLWVKHCGISHT---GSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA--STGDTSA 233 (521)
Q Consensus 160 vsl~eG~TPL~~~~~l~~~~lg~-~~l~vK~E~~nPT---GSfKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~ 233 (521)
++|..|+|||++++++++. +|. .+||+|+|++||+ ||+|||.+..++..++ +.| ..+|+++ |+||||.
T Consensus 8 ~~l~~g~TPl~~~~~l~~~-~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~---~~G--~~~vvs~ggs~gN~g~ 81 (337)
T TIGR01274 8 YPLTFGPSPIHPLPRLSQH-LGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQ---AQG--CTTLVSIGGIQSNQTR 81 (337)
T ss_pred cccCCCCCCceEhHhhHHh-cCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHH---HcC--CCEEEECCCCcchHHH
Confidence 5799999999999999876 664 4899999999987 6779999998888764 344 4677765 7799999
Q ss_pred HHHHHHHhcCCCEEEEccCCcCC--------HHhHHhHHhCCCEEEEECCCHH----HHHHHHHHHHhcC-Cc-cccCC-
Q 009957 234 ALSAYCASAGIPSIVFLPANKIS--------IAQLVQPIANGAFVLSIDTDFD----GCMKLIREVTSEL-PI-YLANS- 298 (521)
Q Consensus 234 AlAa~aa~~Gi~~~V~vP~~~~s--------~~k~~q~~~~GA~Vi~v~g~~d----d~~~~~~~~~~~~-~~-~~~ns- 298 (521)
|+|++|+++|++|+||+|+. ++ ..|+.+|+.+||+|+.++++++ +....+.+..++. +. |+++.
T Consensus 82 alA~~a~~~Gl~~~iv~~~~-~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~ 160 (337)
T TIGR01274 82 QVAAVAAHLGMKCVLVQENW-VNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAG 160 (337)
T ss_pred HHHHHHHHcCCcEEEEeccC-CCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCC
Confidence 99999999999999999985 22 4688889999999999998765 3443444444443 32 33332
Q ss_pred --CChHhHhhHHHHHHHHHHhcC--CCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHh
Q 009957 299 --LNSLRLEGQKTAAVEILQQFD--WEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYK 374 (521)
Q Consensus 299 --~Np~~i~G~~T~a~EI~eQl~--~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~ 374 (521)
.||+..+|++++++||++|++ +..||+||||+|+||+++|++++|+++ + +.+|||+||++++.++.+...
T Consensus 161 ~~~~~~~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~---~---~~~~vigV~~~~~~~~~~~~~ 234 (337)
T TIGR01274 161 CSDHPLGGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAAD---G---RKDRVIGIDASATPEQTRAQI 234 (337)
T ss_pred CCCCccchhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHh---C---CCCeEEEEEecCCHHHHHHHH
Confidence 368889999999999999964 236999999999999999999999864 2 578999999999877743311
Q ss_pred hCCcceeecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeecc-chHHHHHHHHHHH
Q 009957 375 SGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICP-HTGVALTALIKLR 452 (521)
Q Consensus 375 ~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~eP-ssA~alAa~~~l~ 452 (521)
.+...++++++.+..+..... +.......+..+.|+|+|++++++++ +++|+++|| +||++++|++++.
T Consensus 235 --------~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~ 305 (337)
T TIGR01274 235 --------LRIARNTAEKIGLERDITEDD-VVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMI 305 (337)
T ss_pred --------HHHHHHHHHHhCCCCCcCccc-eEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHH
Confidence 112356777777665422110 11123445678999999999999997 789999999 5999999999999
Q ss_pred hcCCCCCCCeEEEEeCCC
Q 009957 453 NSGVIGPLDRTVVVSTAH 470 (521)
Q Consensus 453 ~~g~i~~~~~vV~v~TG~ 470 (521)
+++.+.++++||+++||+
T Consensus 306 ~~g~~~~~~~vv~~htGG 323 (337)
T TIGR01274 306 RRGEFKEGSNVLYAHLGG 323 (337)
T ss_pred hcCCCCCCCEEEEEeCCC
Confidence 999999999999999995
No 76
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.6e-40 Score=365.77 Aligned_cols=305 Identities=19% Similarity=0.195 Sum_probs=231.8
Q ss_pred cccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHH
Q 009957 161 SAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA 240 (521)
Q Consensus 161 sl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 240 (521)
.+....|||+++++|++. +|. +||+|+|++|||||||||++...+..++ ++|++ +.|+++|+||||.|+|++|+
T Consensus 266 ~~~grpTPL~~~~~Ls~~-~G~-~IylK~E~lnptGS~K~r~al~~~~~a~---~~g~~-~vi~e~gsGnhG~A~A~~aa 339 (610)
T PRK13803 266 NYAGRPTPLTEAKRLSDI-YGA-RIYLKREDLNHTGSHKINNALGQALLAK---RMGKT-RIIAETGAGQHGVATATACA 339 (610)
T ss_pred HhCCCCCcceeHHHHHHh-hCC-EEEEEeCCCCCcccHHHHHHHHHHHHHH---HcCCC-EEEEecChHHHHHHHHHHHH
Confidence 344458999999999876 664 8999999999999999999887766553 34532 45667899999999999999
Q ss_pred hcCCCEEEEccCCcCC--HHhHHhHHhCCCEEEEECC---CHHHHH-HHHHHHHhc-CC-ccccCCC---ChH--hH-hh
Q 009957 241 SAGIPSIVFLPANKIS--IAQLVQPIANGAFVLSIDT---DFDGCM-KLIREVTSE-LP-IYLANSL---NSL--RL-EG 306 (521)
Q Consensus 241 ~~Gi~~~V~vP~~~~s--~~k~~q~~~~GA~Vi~v~g---~~dd~~-~~~~~~~~~-~~-~~~~ns~---Np~--~i-~G 306 (521)
++|++|+||||+..+. ..++.+|+.+||+|+.|++ +++++. +.++++..+ .+ +|..++. +|+ .+ .|
T Consensus 340 ~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~ 419 (610)
T PRK13803 340 LFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYF 419 (610)
T ss_pred HcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHH
Confidence 9999999999986332 3466789999999999983 466664 445555333 23 3433322 343 23 58
Q ss_pred HHHHHHHHHHhcCC---CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCc----hhhHHHhhCCcc
Q 009957 307 QKTAAVEILQQFDW---EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANAN----PLYLYYKSGWKD 379 (521)
Q Consensus 307 ~~T~a~EI~eQl~~---~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~----~l~~~~~~G~~~ 379 (521)
|+|++.||++|+.. ..||+||+|+|+||+++|++.+|++ ++.+|||+|||.++. .....+..|...
T Consensus 420 ~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-------~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g 492 (610)
T PRK13803 420 QSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-------DPSVKLIGVEAGGKGVNTGEHAATIKKGRKG 492 (610)
T ss_pred hhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-------CCCceEEEEecCCCCcccccccchhhcCCee
Confidence 99999999999842 3699999999999999999999853 367899999999862 234455555321
Q ss_pred e-------e------ecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHH
Q 009957 380 F-------K------AVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVAL 445 (521)
Q Consensus 380 ~-------~------~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~al 445 (521)
. . .....+|++.|++.. ......++..+...+.++.|+|+|+++|+++| +++|++++++||+++
T Consensus 493 ~~~g~~~~~~~~~~g~~~~~~sia~gl~~~--gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~al 570 (610)
T PRK13803 493 VLHGSMTYLMQDENGQILEPHSISAGLDYP--GIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHAL 570 (610)
T ss_pred eeccceeeeecccCCcccCCceeeccCCCC--CCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHH
Confidence 0 0 022456888888743 33344455555555678999999999999998 789999999999999
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhh
Q 009957 446 TALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYH 482 (521)
Q Consensus 446 Aa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~ 482 (521)
|+++++..+ +.++++||+++||+|.|+.+++.++.
T Consensus 571 A~~~~~~~~--~~~~~~Vvv~lsG~G~kd~~~~~~~~ 605 (610)
T PRK13803 571 AYLKEGRKK--FKKKDIVIVNLSGRGDKDIPTLKEYF 605 (610)
T ss_pred HHHHHhchh--cCCCCeEEEEeCCCCcCCHHHHHHHH
Confidence 999987543 56788999999999999999886554
No 77
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1.6e-40 Score=341.17 Aligned_cols=284 Identities=17% Similarity=0.194 Sum_probs=218.7
Q ss_pred ccccCCccccccccccccCCCCcEEEecCCCCCC--CChhHHHHHHHHHHHHHHHhcCCCceEEEEe--CCchHHHHHHH
Q 009957 162 AFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHT--GSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA--STGDTSAALSA 237 (521)
Q Consensus 162 l~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPT--GSfKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~AlAa 237 (521)
|....|||++++++... .|. +||+|+|++||| ||||||++..++..+. +.| .+.|+++ |+||||.|+|+
T Consensus 3 ~~~~~TPl~~~~~l~~~-~g~-~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~---~~g--~~~vv~~g~ssGN~g~alA~ 75 (311)
T TIGR01275 3 LIPWPTPIQYLPRISRE-IGA-EIYIKRDDLTGLGIGGNKIRKLEYLLADAL---SKG--ADTVITVGAIQSNHARATAL 75 (311)
T ss_pred CCCCCCcceechhhhhh-cCC-eEEEEeccCcCCCCCchhHHHHHHHHHHHH---HcC--CCEEEEcCCchhHHHHHHHH
Confidence 45578999999988775 564 899999999998 9999999998887653 334 4578887 67999999999
Q ss_pred HHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC-CHHHHHHHHHHHHh----cC-C-ccccC-CCChHhHhhHHH
Q 009957 238 YCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT-DFDGCMKLIREVTS----EL-P-IYLAN-SLNSLRLEGQKT 309 (521)
Q Consensus 238 ~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g-~~dd~~~~~~~~~~----~~-~-~~~~n-s~Np~~i~G~~T 309 (521)
+|+++|++++||||.+..+..+..+++.+||+|+.+++ +++++.+.++++++ +. . ++..+ ..||...+|+++
T Consensus 76 ~a~~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~ 155 (311)
T TIGR01275 76 AAKKLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTLGYVE 155 (311)
T ss_pred HHHHhCCceEEEecCCccCCCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHHHHHH
Confidence 99999999999999863344566778999999999985 66666555555443 22 2 33334 358999999999
Q ss_pred HHHHHHHhcCC-CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCch-hhHHHhhCCcceeeccccc
Q 009957 310 AAVEILQQFDW-EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANP-LYLYYKSGWKDFKAVKAST 387 (521)
Q Consensus 310 ~a~EI~eQl~~-~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~-l~~~~~~G~~~~~~~~~~~ 387 (521)
+++||++|+++ ..||+||+|+|+||+++|++++|+++ + +..+||+||++.+.. ....+. ...+
T Consensus 156 ~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~---~---~~~~vigV~~~~~~~~~~~~~~---------~~~~ 220 (311)
T TIGR01275 156 AVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSIL---N---EDIRPVGVAVGRFGEDMTDKFV---------NLVK 220 (311)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh---C---CCCcEEEEEecccHHHHHHHHH---------HHHH
Confidence 99999999963 36999999999999999999998864 2 456899999876432 221111 1235
Q ss_pred chhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeecc-chHHHHHHHHHHHhcCCCCCCCeEEE
Q 009957 388 TFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICP-HTGVALTALIKLRNSGVIGPLDRTVV 465 (521)
Q Consensus 388 Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~eP-ssA~alAa~~~l~~~g~i~~~~~vV~ 465 (521)
++++++.+.... .+..+++..+..+.|+|+|++++++++ +++|+++|| ++|+++++++++.+++.+. +++||+
T Consensus 221 ~~~~g~~~~~~~----~~~~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~-~~~vv~ 295 (311)
T TIGR01275 221 EIAEGLEVKASE----VIPELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELG-EKGILF 295 (311)
T ss_pred HHHHHhCCCCCC----CEEEECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCC-CCCEEE
Confidence 677777654211 223345566778999999999999997 789999999 5999999999988776553 678999
Q ss_pred EeCCCCC
Q 009957 466 VSTAHGL 472 (521)
Q Consensus 466 v~TG~g~ 472 (521)
++||+..
T Consensus 296 i~tGG~~ 302 (311)
T TIGR01275 296 IHTGGIS 302 (311)
T ss_pred EECCCcc
Confidence 9999854
No 78
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=2.8e-40 Score=338.79 Aligned_cols=280 Identities=15% Similarity=0.119 Sum_probs=213.5
Q ss_pred CccccccccccccCCC-CcEEEecCCCCCCC---ChhHHHHHHHHHHHHHHHhcCCCceEEEEe--CCchHHHHHHHHHH
Q 009957 167 SNLFWAERFGKQFLGM-NDLWVKHCGISHTG---SFKDLGMTVLVSQVNRLRKMKRPVVGVGCA--STGDTSAALSAYCA 240 (521)
Q Consensus 167 TPL~~~~~l~~~~lg~-~~l~vK~E~~nPTG---SfKDRga~~~v~~a~~~~~~g~~~~~Vv~a--SSGN~g~AlAa~aa 240 (521)
|||++++++... +|. .+||+|+|++|||| |+|||++..++..+. +.| .+.|+++ |+||||+|+|++|+
T Consensus 1 TPl~~~~~l~~~-~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~---~~g--~~~vv~~ggs~GN~g~alA~~a~ 74 (307)
T cd06449 1 TPIQYLPRLSEH-LGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDAL---AKG--ADTLVTVGGIQSNHTRQVAAVAA 74 (307)
T ss_pred CcccchhHHHHh-hCCCCcEEEecccccCCCCccchHHHHHHHHHHHHH---HcC--CCEEEECCCchhHHHHHHHHHHH
Confidence 899999998876 643 48999999999995 569999998888764 334 4578887 68999999999999
Q ss_pred hcCCCEEEEccCCcCC--------HHhHHhHHhCCCEEEEECCCHHHH----H-HHHHHHHhcCC-ccc-cCC--CChHh
Q 009957 241 SAGIPSIVFLPANKIS--------IAQLVQPIANGAFVLSIDTDFDGC----M-KLIREVTSELP-IYL-ANS--LNSLR 303 (521)
Q Consensus 241 ~~Gi~~~V~vP~~~~s--------~~k~~q~~~~GA~Vi~v~g~~dd~----~-~~~~~~~~~~~-~~~-~ns--~Np~~ 303 (521)
++|++|+||+|.+ .+ ..|+.+++.+||+|+.+++++++. . +.++++.++.+ .|+ .+. .||..
T Consensus 75 ~~G~~~~i~v~~~-~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (307)
T cd06449 75 KLGLKCVLVQENW-VPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG 153 (307)
T ss_pred HcCCeEEEEecCC-CCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc
Confidence 9999999999986 44 357888999999999999876542 2 22333333322 233 343 39999
Q ss_pred HhhHHHHHHHHHHhcCC--CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCccee
Q 009957 304 LEGQKTAAVEILQQFDW--EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFK 381 (521)
Q Consensus 304 i~G~~T~a~EI~eQl~~--~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~ 381 (521)
++|++|+++||++|+++ ..||+||+|+|+||+++|++++|+++ + +.+|||+|++++++++...-. .
T Consensus 154 ~~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~---~---~~~~ii~V~~~~~~~~~~~~~------~ 221 (307)
T cd06449 154 GLGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAAL---G---RQRRVIGIDASAKPEKTKAQV------L 221 (307)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhc---C---CCCeEEEEEecCchHHHHHHH------H
Confidence 99999999999999963 26999999999999999999998753 2 467999999999877654310 0
Q ss_pred ecccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeecc-chHHHHHHHHHHHhcCCCCC
Q 009957 382 AVKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICP-HTGVALTALIKLRNSGVIGP 459 (521)
Q Consensus 382 ~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~eP-ssA~alAa~~~l~~~g~i~~ 459 (521)
.... .+++ +++ .+... ..+...+++.+.++.|+|+|++++++++ +++|+++|| ++|+++++++++.+++.+++
T Consensus 222 ~~~~-~~~~-~~g--~~~~~-~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~ 296 (307)
T cd06449 222 RIAQ-AKLA-EEG--LEVKE-EDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKE 296 (307)
T ss_pred HHHH-HHHH-HcC--CCCCc-ccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCC
Confidence 0000 1221 111 11111 1122334566778999999999999997 779999999 79999999999999888888
Q ss_pred CCeEEEEeCCC
Q 009957 460 LDRTVVVSTAH 470 (521)
Q Consensus 460 ~~~vV~v~TG~ 470 (521)
+++||+++||+
T Consensus 297 ~~~vv~i~TGG 307 (307)
T cd06449 297 GSKVLFIHLGG 307 (307)
T ss_pred CCeEEEEeCCC
Confidence 89999999995
No 79
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.8e-35 Score=304.53 Aligned_cols=284 Identities=16% Similarity=0.136 Sum_probs=208.4
Q ss_pred hhcccccCCccccccccccccCCCCcEEEecCCCCCC--CChhHHHHHHHHHHHHHHHhcCCCceEEE--EeCCchHHHH
Q 009957 159 IVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHT--GSFKDLGMTVLVSQVNRLRKMKRPVVGVG--CASTGDTSAA 234 (521)
Q Consensus 159 ~vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPT--GSfKDRga~~~v~~a~~~~~~g~~~~~Vv--~aSSGN~g~A 234 (521)
.+++.+++|||++++++... .|. +||+|+|++||+ ||||||++..++..+. +.|. .+|+ ++|+||||.|
T Consensus 14 ~~~l~~~~TPl~~~~~l~~~-~g~-~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~---~~G~--~~vv~~~~ssGN~g~a 86 (329)
T PRK14045 14 RVELIPWETPIQYLPNISRE-LGA-DVYVKRDDLTGLGIGGNKIRKLEYLLGDAL---SRGA--DVVITVGAVHSNHAFV 86 (329)
T ss_pred CcccCCCCCCcccchhhHHH-hCC-eEEEEcccccCCCCCcchHHHHHhHHHHHH---HcCC--CEEEEeCccHHHHHHH
Confidence 46899999999999888765 565 899999999996 8999999998887653 3443 4455 5999999999
Q ss_pred HHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC--CH---HHHHHHHHHHHhcCC-ccccCC--CChHhHhh
Q 009957 235 LSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT--DF---DGCMKLIREVTSELP-IYLANS--LNSLRLEG 306 (521)
Q Consensus 235 lAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g--~~---dd~~~~~~~~~~~~~-~~~~ns--~Np~~i~G 306 (521)
+|++|++.|++|+||+|.......+..+++.+||+++.++. ++ +.+.+.++++.++.+ .|+.+. .||...+|
T Consensus 87 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g 166 (329)
T PRK14045 87 TGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLG 166 (329)
T ss_pred HHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHH
Confidence 99999999999999999863233355667899999987763 22 345666666665543 444433 58999999
Q ss_pred HHHHHHHHHHhcCC--CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCc-hhhHHHhhCCcceeec
Q 009957 307 QKTAAVEILQQFDW--EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANAN-PLYLYYKSGWKDFKAV 383 (521)
Q Consensus 307 ~~T~a~EI~eQl~~--~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~-~l~~~~~~G~~~~~~~ 383 (521)
+.+...||++|+++ ..+|+||+|+|+||+++|++++|+.+ ++..|||+|++.+.. .+.+.+.......
T Consensus 167 ~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~------~~~~kVigv~~~~~~~~~~~~~~~~~~~~--- 237 (329)
T PRK14045 167 YVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAIL------NAEWRVVGIAVGSFGEKMKEKVKNLVKKT--- 237 (329)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHh------CCCCeEEEEEecCCHHHHHHHHHHHHHHH---
Confidence 98888899999974 36999999999999999999998753 256799999996622 3333222210000
Q ss_pred ccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeecc-chHHHHHHHHHHHhcCCCCCCC
Q 009957 384 KASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICP-HTGVALTALIKLRNSGVIGPLD 461 (521)
Q Consensus 384 ~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~eP-ssA~alAa~~~l~~~g~i~~~~ 461 (521)
. -..++ +.+.... ...+...|.+..++ +|.+++++++ ++|||++|| +||++++|++++.+++.. +.
T Consensus 238 ---~-~~~g~--~~~~~~~---~~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~--~~ 305 (329)
T PRK14045 238 ---K-ELLGV--KVKVQEP---ELYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGEL--GE 305 (329)
T ss_pred ---H-HHhCC--CCCccce---EecccccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCC--CC
Confidence 0 00111 1111000 01122224466788 6999999987 789999999 999999999999987632 67
Q ss_pred eEEEEeCCC
Q 009957 462 RTVVVSTAH 470 (521)
Q Consensus 462 ~vV~v~TG~ 470 (521)
+||+++||+
T Consensus 306 ~iv~ihtGG 314 (329)
T PRK14045 306 KILFIHTGG 314 (329)
T ss_pred CEEEEECCC
Confidence 999999997
No 80
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-34 Score=283.30 Aligned_cols=287 Identities=18% Similarity=0.206 Sum_probs=212.3
Q ss_pred ccccCCccccccccccccCCC-CcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHH
Q 009957 162 AFEGNSNLFWAERFGKQFLGM-NDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA 240 (521)
Q Consensus 162 l~eG~TPL~~~~~l~~~~lg~-~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa 240 (521)
---|+|||+.++++.. |+ .++++|+|++||+||.|||.+..|+..|+..+..-.+..+++++||||||.+||.+|+
T Consensus 48 ~liG~TPlv~ln~i~~---g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a 124 (362)
T KOG1252|consen 48 DLIGNTPLVKLNKIAG---GCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAA 124 (362)
T ss_pred HHhCCCceEEeccccC---CccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHH
Confidence 3459999999988743 34 4899999999999999999999999988754333345578999999999999999999
Q ss_pred hcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC--H---HHHHHHHHHHHhcCC-ccc----cCCCChHhHhhHHHH
Q 009957 241 SAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD--F---DGCMKLIREVTSELP-IYL----ANSLNSLRLEGQKTA 310 (521)
Q Consensus 241 ~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~--~---dd~~~~~~~~~~~~~-~~~----~ns~Np~~i~G~~T~ 310 (521)
..|++|+++||+. +|.+|+.+++++||+|+.++-. + +-+...+.++..+.+ .|. -|+-||. .++.|+
T Consensus 125 ~~Gyk~i~tmP~~-ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~--~hy~tt 201 (362)
T KOG1252|consen 125 LRGYKCIITMPEK-MSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPL--AHYETT 201 (362)
T ss_pred HcCceEEEEechh-hhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcc--cccccc
Confidence 9999999999997 8999999999999999999731 2 235566666665543 333 3444555 789999
Q ss_pred HHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchh
Q 009957 311 AVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFA 390 (521)
Q Consensus 311 a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia 390 (521)
+.||++|+. +.+|.||.++|+||+++|+.+ ++++.+ +..+||+|+|..+ .++.....|. . .--.
T Consensus 202 g~EI~~q~~-g~vDi~V~gaGTGGTitgvGR---ylke~~---~~~kVv~vdp~~S-~~~~~~~~g~-------~-~~~I 265 (362)
T KOG1252|consen 202 GPEIWRQLD-GKVDIFVAGAGTGGTITGVGR---YLKEQN---PNIKVVGVDPQES-IVLSGGKPGP-------T-FHKI 265 (362)
T ss_pred cHHHHHHhc-CCCCEEEeccCCCceeechhH---HHHHhC---CCCEEEEeCCCcc-eeccCCCCCC-------C-ccce
Confidence 999999996 589999999999999999998 566665 5789999999883 4443333331 0 0112
Q ss_pred hhhccCC-CccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCCCCCeEEEEeC
Q 009957 391 SAIQIGD-PVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIGPLDRTVVVST 468 (521)
Q Consensus 391 ~~i~i~~-P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~~~~~vV~v~T 468 (521)
.||+.+. |.++..- ..+..+.++++|++.+.++| .+||+.++.+|+++++|++++.++-. ..++-+|+++.
T Consensus 266 ~GIGyg~~p~~ld~~------~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~e-n~~kliV~~~p 338 (362)
T KOG1252|consen 266 QGIGYGFIPTTLDTK------LVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPE-NAGKLIVVTFP 338 (362)
T ss_pred eccccCcCccccchH------HHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccc-cCCcEEEEECC
Confidence 3555443 4433221 11234466777777766665 89999999999999999999877643 23333333336
Q ss_pred CCCCCchHH
Q 009957 469 AHGLKFTQS 477 (521)
Q Consensus 469 G~g~K~~~~ 477 (521)
++|..|.-+
T Consensus 339 d~ge~Y~st 347 (362)
T KOG1252|consen 339 DFGERYLST 347 (362)
T ss_pred Ccchhhhhh
Confidence 667766544
No 81
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-33 Score=268.64 Aligned_cols=296 Identities=18% Similarity=0.204 Sum_probs=230.0
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
.-|+|||++...|++. .|+ +++.|.|++||.||.|||.+.+++..+++.+++-++ -.|++.|+|+||.++|..|..+
T Consensus 46 ~IGnTpliri~sLs~a-TGc-nIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v~~a~ 122 (391)
T KOG1481|consen 46 AIGNTPLIRINSLSNA-TGC-NILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHVARAL 122 (391)
T ss_pred hhCCCceEEeeccccc-ccc-chhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHhhhhc
Confidence 3489999999999987 776 899999999999999999999999998776544333 5799999999999999999999
Q ss_pred CCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC----CHHHHHHHHHHHHhcC-----C--ccccCCC-ChHh-HhhHHH
Q 009957 243 GIPSIVFLPANKISIAQLVQPIANGAFVLSIDT----DFDGCMKLIREVTSEL-----P--IYLANSL-NSLR-LEGQKT 309 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g----~~dd~~~~~~~~~~~~-----~--~~~~ns~-Np~~-i~G~~T 309 (521)
|.+|+|+||++ .|.+|...++.+||+|..|.- +.+.-...+++.+++. + .++++++ |+.+ ..++.|
T Consensus 123 Gyk~~I~mPdd-qs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyet 201 (391)
T KOG1481|consen 123 GYKCHIYMPDD-QSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYET 201 (391)
T ss_pred CcceEEECCCh-HHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcC
Confidence 99999999998 799999999999999988863 2222233344433331 1 2455654 6665 667899
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCc--------hhhHHHh-hCCcce
Q 009957 310 AAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANAN--------PLYLYYK-SGWKDF 380 (521)
Q Consensus 310 ~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~--------~l~~~~~-~G~~~~ 380 (521)
+|.|||.|.. +..|.|+..+|+||+++|+.|-+++ .. +....++.++|.++. .|+...+ +|.
T Consensus 202 TGPEIw~Qtk-GniDaFia~~GTGGTiaGVskyLke---k~--~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~--- 272 (391)
T KOG1481|consen 202 TGPEIWHQTK-GNIDAFIAGTGTGGTIAGVSKYLKE---KS--DGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGT--- 272 (391)
T ss_pred cCcHHHHhhc-CCcceEEeccCCCcchHHHHHHHhh---cC--CCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCc---
Confidence 9999999997 4799999999999999999985553 21 122577888888842 3333332 232
Q ss_pred eecccccchhhhhccCC-CccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHhcCCCC
Q 009957 381 KAVKASTTFASAIQIGD-PVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRNSGVIG 458 (521)
Q Consensus 381 ~~~~~~~Tia~~i~i~~-P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~~g~i~ 458 (521)
.+....+||.+||++.. ..|+. ..+...+..+.|+|++.++..+.| ...|+|++-+||+...|+.++++. +.
T Consensus 273 r~r~q~dti~EGIGinRiT~Nf~----m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~--Lg 346 (391)
T KOG1481|consen 273 RRRNQVDTITEGIGINRITGNFQ----MAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKT--LG 346 (391)
T ss_pred ccCCCcchhhhcccccccccccc----cchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHh--cC
Confidence 22335579999998764 33332 233445667899999999999976 899999999999999999988765 68
Q ss_pred CCCeEEEEeCCCCCCchHH
Q 009957 459 PLDRTVVVSTAHGLKFTQS 477 (521)
Q Consensus 459 ~~~~vV~v~TG~g~K~~~~ 477 (521)
++.+||.++|++|.+....
T Consensus 347 pG~~iVtilCDsG~rh~sk 365 (391)
T KOG1481|consen 347 PGHTIVTILCDSGSRHLSK 365 (391)
T ss_pred CCceEEEEEeCCcchHHHH
Confidence 9999999999999996543
No 82
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.96 E-value=2.5e-28 Score=241.31 Aligned_cols=306 Identities=19% Similarity=0.221 Sum_probs=227.5
Q ss_pred hcccccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHH
Q 009957 160 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYC 239 (521)
Q Consensus 160 vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~a 239 (521)
....-..|||+.+++|++. +| .+||+|+|++|+||++|..-+.-.+..+ +++|+ .+.|++.-.|-||.|.|.+|
T Consensus 50 ~~Y~GRptpLy~a~~Lt~~-~g-akiyLKREDL~HtGAHKiNN~lGQ~LLA---krMGK-~riIAETGAGQHGVAtAta~ 123 (396)
T COG0133 50 KDYAGRPTPLYFAERLTEH-LG-AKIYLKREDLNHTGAHKINNALGQALLA---KRMGK-TRIIAETGAGQHGVATATAA 123 (396)
T ss_pred HHhCCCCChhHHHHHHHHh-hC-ceEEEehhhhcccchhhHHHHHHHHHHH---HHhCC-ceEEeecCCCcccHHHHHHH
Confidence 3455678999999999987 77 5999999999999999999886554444 45675 47888899999999999999
Q ss_pred HhcCCCEEEEccCCcCCHHh--HHhHHhCCCEEEEECC---CHHH-HHHHHHHHHhcC--CccccCCC---Ch---HhHh
Q 009957 240 ASAGIPSIVFLPANKISIAQ--LVQPIANGAFVLSIDT---DFDG-CMKLIREVTSEL--PIYLANSL---NS---LRLE 305 (521)
Q Consensus 240 a~~Gi~~~V~vP~~~~s~~k--~~q~~~~GA~Vi~v~g---~~dd-~~~~~~~~~~~~--~~~~~ns~---Np---~~i~ 305 (521)
++.|++|+|||-..++...+ +..|+.+||+|+.|.. +..| +.+..++|.... -.|.+.+. +| ...+
T Consensus 124 A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRd 203 (396)
T COG0133 124 ALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRD 203 (396)
T ss_pred HHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHH
Confidence 99999999999876544333 3348899999999973 3444 456777776643 24444432 33 3578
Q ss_pred hHHHHHHHHHHhcC---CCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchh----hHHHhhCCc
Q 009957 306 GQKTAAVEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPL----YLYYKSGWK 378 (521)
Q Consensus 306 G~~T~a~EI~eQl~---~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l----~~~~~~G~~ 378 (521)
-|+.|+.|.-+|+- ++.||.||.++|+|+|..|++..|.. ++.+++|+|++.+-..- ...+..|+.
T Consensus 204 FQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-------d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~ 276 (396)
T COG0133 204 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-------DESVRLIGVEAAGKGIETGKHAATLTAGRP 276 (396)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-------CCCceEEEeccCcCccCCCccceeecCCCc
Confidence 89999999888752 26899999999999999999987752 46789999999873211 112333321
Q ss_pred c-------e------eecccccchhhhhccCCCccHHHHHHHHHhcC-CeEEEeCHHHHHHHHHHH-HhcCCeeccchHH
Q 009957 379 D-------F------KAVKASTTFASAIQIGDPVSIDRAVYALKNCN-GIVEEATEEELMDAMAQA-DSTGMFICPHTGV 443 (521)
Q Consensus 379 ~-------~------~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~-g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~ 443 (521)
. + -.+...++++.|++ .|.-.++.-+ +.+++ -..+.|+|+|+++|.++| +.|||+.-..|+.
T Consensus 277 GvlhG~~tyllQd~~GQi~e~hSISAGLD--YPgVGPeha~-l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsH 353 (396)
T COG0133 277 GVLHGMKTYLLQDEDGQILESHSISAGLD--YPGVGPEHAY-LKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSH 353 (396)
T ss_pred eeeecccceeeEcCCCCEeeeeeeccCCC--CCCCChhHHH-HHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHH
Confidence 1 0 01113467777776 4555555443 34443 346789999999999998 8899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhhc
Q 009957 444 ALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHS 483 (521)
Q Consensus 444 alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~~ 483 (521)
|+|.+.++..+ ..+++.+|+-++|.|.|+..++.++..
T Consensus 354 AlA~a~kla~~--~~~~~~ivvnlSGRGDKDv~tv~~~l~ 391 (396)
T COG0133 354 ALAYALKLAPK--LPKDEIIVVNLSGRGDKDVFTVAKLLG 391 (396)
T ss_pred HHHHHHHhchh--cCCCcEEEEEccCCCcccHHHHHHHhh
Confidence 99999998866 346678888899999999999866543
No 83
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.95 E-value=4.4e-27 Score=234.49 Aligned_cols=312 Identities=17% Similarity=0.148 Sum_probs=219.6
Q ss_pred hcccccCCccccccccccccCC-CCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHH
Q 009957 160 VSAFEGNSNLFWAERFGKQFLG-MNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAY 238 (521)
Q Consensus 160 vsl~eG~TPL~~~~~l~~~~lg-~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~ 238 (521)
..-.-..|||++++||.+. ++ ..+||+|+|++|||||+|..-+...+..+ +++|++ +.|.+.-.|.||.|+|..
T Consensus 116 y~y~gRpspL~~AkRLte~-~q~ga~IylKrEdlnh~GsHKiNnav~Qalla---krlGkk-nviaETGAGQhGvatA~a 190 (477)
T KOG1395|consen 116 YKYLGRPSPLIRAKRLTEH-CQTGARIYLKREDLNHTGSHKINNAVAQALLA---KRLGKK-NVIAETGAGQHGVATATA 190 (477)
T ss_pred HHHcCCCchhHHHHHHHHH-hCCCCEEEEEecCCCccccCCcccHHHHHHHH---HHhccc-ceeeccCCCccchHHHHH
Confidence 3334567899999999876 66 35899999999999999999886544443 455643 577888889999999999
Q ss_pred HHhcCCCEEEEccCCcC--CHHhHHhHHhCCCEEEEECCC----HHHHHHHHHHHHhcCC--ccccCC-C--ChH---hH
Q 009957 239 CASAGIPSIVFLPANKI--SIAQLVQPIANGAFVLSIDTD----FDGCMKLIREVTSELP--IYLANS-L--NSL---RL 304 (521)
Q Consensus 239 aa~~Gi~~~V~vP~~~~--s~~k~~q~~~~GA~Vi~v~g~----~dd~~~~~~~~~~~~~--~~~~ns-~--Np~---~i 304 (521)
|++.|++|+|||-.+.. ...++.+|+.+||+|+.|... .|+.-+..+.+..... .|.+.+ . .|+ ..
T Consensus 191 ~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr 270 (477)
T KOG1395|consen 191 CAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVR 270 (477)
T ss_pred HHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHH
Confidence 99999999999987632 234455689999999999742 2222333333333221 233332 2 232 23
Q ss_pred hhHHHHHHHHHHhcC---CCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCch----hhHHHhhCC
Q 009957 305 EGQKTAAVEILQQFD---WEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANP----LYLYYKSGW 377 (521)
Q Consensus 305 ~G~~T~a~EI~eQl~---~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~----l~~~~~~G~ 377 (521)
.-|.+|+-|-..|+- .+.||.||.++|+|+|.+|++.-|.. +...++|+|++.+... ....+..|+
T Consensus 271 ~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~-------dk~v~~igveaagdg~dtp~hsatltagd 343 (477)
T KOG1395|consen 271 TFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR-------DKSVGMIGVEAAGDGVDTPKHSATLTAGD 343 (477)
T ss_pred HHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc-------cchhheeeeeecccccCCcchhceeeccc
Confidence 456788888776642 25899999999999999999988864 3456778887766321 111122221
Q ss_pred -------cceee------cccccchhhhhccCCCccHHHHHHHHHhcC-CeEEEeCHHHHHHHHHHH-HhcCCeeccchH
Q 009957 378 -------KDFKA------VKASTTFASAIQIGDPVSIDRAVYALKNCN-GIVEEATEEELMDAMAQA-DSTGMFICPHTG 442 (521)
Q Consensus 378 -------~~~~~------~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~-g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA 442 (521)
..+.- +-.+++|+.|++ .|.-..+.- .+++++ -++++|+|.|++++.+++ +.|||+.-|.+.
T Consensus 344 ~Gv~hG~~ty~lq~~dGqi~~phsIsAGLd--YpGvgPels-~~k~~grae~isitd~eclegfk~~srlEGIIPAlEss 420 (477)
T KOG1395|consen 344 VGVFHGVTTYVLQDTDGQIFDPHSISAGLD--YPGVGPELS-HLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESS 420 (477)
T ss_pred ccccccceeeeeeccCCccccCCccccCCC--CCCCChhHH-HHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchh
Confidence 01110 113456666665 344444433 345443 467899999999999998 889999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhhcchhHH
Q 009957 443 VALTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEIKD 488 (521)
Q Consensus 443 ~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~~~~~~~ 488 (521)
.|+++...+... +++++.+|+-.+|+|.|+.+++.+|+..+.+.
T Consensus 421 HAva~~~~lck~--l~~~k~ivi~~sGrGdkDvqS~~kyL~~lgpk 464 (477)
T KOG1395|consen 421 HAVAGEAELCKT--LPEDKVIVINISGRGDKDVQSVAKYLPGLGPK 464 (477)
T ss_pred hHHHHHHHhccc--cCCCcEEEEEecCCCCchHHHHHHhccccccc
Confidence 999997776655 67889999999999999999999998766543
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.92 E-value=3.5e-24 Score=212.36 Aligned_cols=308 Identities=19% Similarity=0.133 Sum_probs=214.3
Q ss_pred cccCCccccccccccccCCCC-cEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHh
Q 009957 163 FEGNSNLFWAERFGKQFLGMN-DLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCAS 241 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~-~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~ 241 (521)
....|||+++.+|.+. +|.. +||+|.|+..||||+|.+.+..-.-+ .++.|.+ +.+.+.-.|..|.|++.+|+.
T Consensus 75 ~gRPTPL~RA~~LE~~-L~tparIYyK~Eg~tptGSHKiNTAlAqaYy---ak~eg~~-rl~TETGAGQWGsAlslA~al 149 (432)
T COG1350 75 IGRPTPLIRAKNLEEA-LGTPARIYYKYEGVTPTGSHKINTALAQAYY---AKKEGAK-RLTTETGAGQWGSALSLAAAL 149 (432)
T ss_pred hCCCCchhhhhhHHHH-hCCCcEEEEEecccCCCCCCCcchHHHHHHH---HHhcCce-eeecccCCchHHHHHHHHHHH
Confidence 3368999999999876 8874 99999999999999999998544433 3444532 233345667889999999999
Q ss_pred cCCCEEEEccCC--cCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHH-------------------HHh-cCCccccCCC
Q 009957 242 AGIPSIVFLPAN--KISIAQLVQPIANGAFVLSIDTDFDGCMKLIRE-------------------VTS-ELPIYLANSL 299 (521)
Q Consensus 242 ~Gi~~~V~vP~~--~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~-------------------~~~-~~~~~~~ns~ 299 (521)
.|++|+|||-.. ...+.++..|+.+||+|+.-+.+..+.-+...+ ..+ ++.-|...|.
T Consensus 150 f~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSV 229 (432)
T COG1350 150 FGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSV 229 (432)
T ss_pred hCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhH
Confidence 999999999653 123455667899999999888776654433221 111 1234555554
Q ss_pred ChHhHhhHHHHHHHHHHhcC--CCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCC
Q 009957 300 NSLRLEGQKTAAVEILQQFD--WEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGW 377 (521)
Q Consensus 300 Np~~i~G~~T~a~EI~eQl~--~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~ 377 (521)
-...+.+|..+|+|.-+|+. +..||+++-++|+|+|++|+..-|---+..|- ...++|+|++..|+.|.+ |.
T Consensus 230 lnhvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~--~~~~fiAvep~a~P~lT~----Ge 303 (432)
T COG1350 230 LNHVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGK--KETRFIAVEPKACPKLTK----GE 303 (432)
T ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCC--ceeEEEEeCCccCCcccc----ce
Confidence 34457889999999966643 25799999999999999999888865555553 347999999999887753 33
Q ss_pred cceeecc------------------cccchhhhhcc-CCCccHHHHHHHH-HhcCCeEEEeCHHHHHHHHHHH-HhcCCe
Q 009957 378 KDFKAVK------------------ASTTFASAIQI-GDPVSIDRAVYAL-KNCNGIVEEATEEELMDAMAQA-DSTGMF 436 (521)
Q Consensus 378 ~~~~~~~------------------~~~Tia~~i~i-~~P~~~~~~l~~l-~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~ 436 (521)
+.+.-.+ .+.--|.|++- +... .+..+ ++-.-.....+++|+++|.+.+ +.|||+
T Consensus 304 Y~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aP----tls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiV 379 (432)
T COG1350 304 YRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAP----TLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIV 379 (432)
T ss_pred eeccCCchhccchhhhhhccCCCccCCCcccccccccCcCh----HHHHHHHcCcccceecChHHHHHHHHHHHHhcCCc
Confidence 2221111 11122334432 1111 22333 3333345688999999999997 889999
Q ss_pred eccchHHHHHHHHHHHhcCC-CCCCCeEEEEeCCCCCCchHHHHhhhcch
Q 009957 437 ICPHTGVALTALIKLRNSGV-IGPLDRTVVVSTAHGLKFTQSKIDYHSKE 485 (521)
Q Consensus 437 ~ePssA~alAa~~~l~~~g~-i~~~~~vV~v~TG~g~K~~~~~~~~~~~~ 485 (521)
.-|.|+.|+.++.+.+.+.. -.+...|++-++|||+-+.+...++...+
T Consensus 380 PAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~~yl~g~ 429 (432)
T COG1350 380 PAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYDKYLEGE 429 (432)
T ss_pred cCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHHHHhhhh
Confidence 99999999998887654322 12234667779999999988887776543
No 85
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.89 E-value=3e-22 Score=196.89 Aligned_cols=290 Identities=18% Similarity=0.199 Sum_probs=228.9
Q ss_pred CcEEEecCCCCC-CCChhHHHHHHHHHH-HHHH-HhcC--------------------CCceEEEEeCCchHHHHHHHHH
Q 009957 183 NDLWVKHCGISH-TGSFKDLGMTVLVSQ-VNRL-RKMK--------------------RPVVGVGCASTGDTSAALSAYC 239 (521)
Q Consensus 183 ~~l~vK~E~~nP-TGSfKDRga~~~v~~-a~~~-~~~g--------------------~~~~~Vv~aSSGN~g~AlAa~a 239 (521)
+++|+|.++|-| +||.|.||-.+-+.. ++++ .+.| .++ .|.+.||||.|.|+...+
T Consensus 101 G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~y-sIaVGSTGNLGlSIGI~s 179 (443)
T COG3048 101 GRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRY-SIAVGSTGNLGLSIGIMS 179 (443)
T ss_pred cceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhh-eEeecccCccceehhhhh
Confidence 489999999999 899999999876643 4443 3444 122 578899999999999999
Q ss_pred HhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-ccccCCCChH-hHhhHHHHHHHHHHh
Q 009957 240 ASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELP-IYLANSLNSL-RLEGQKTAAVEILQQ 317 (521)
Q Consensus 240 a~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~-~~~~ns~Np~-~i~G~~T~a~EI~eQ 317 (521)
++.|.+++|.|..+ ...+|...++++|++|+..+.||..+.+.-++.++..+ +|+++..|.- ..+|+..++..|-.|
T Consensus 180 A~lGF~vtVHMSAD-Ar~WKKd~LRs~gV~ViEYe~DY~~AVeeGRk~a~~DP~c~FiDDE~S~~LFLGYaVAa~Rlk~Q 258 (443)
T COG3048 180 AALGFKVTVHMSAD-ARAWKKDKLRSHGVTVVEYEQDYGVAVEEGRKEAESDPNCFFIDDENSRTLFLGYAVAAQRLKKQ 258 (443)
T ss_pred hhhcceEEEEecch-HHHHHHHHHHhcCceEEEecchhhHHHHHhhhhhccCCceEEecccchhhhhhhHHHHHHHHHHH
Confidence 99999999999998 57899999999999999999999999888888777554 6778776664 478999999999999
Q ss_pred cCC-------CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecc----cc
Q 009957 318 FDW-------EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVK----AS 386 (521)
Q Consensus 318 l~~-------~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~----~~ 386 (521)
++. ..|-.|.+|+|-||.-.|+..|+|.+.. ...+++-++|..++++.-.+.+|..+-..+. ..
T Consensus 259 ~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fg-----d~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn 333 (443)
T COG3048 259 FDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFG-----DHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDN 333 (443)
T ss_pred HHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhc-----CceEEEEecCCCChHHHHhhhhccccceeeEeecccc
Confidence 763 3577899999999999999999886543 4668999999999998888888865432222 34
Q ss_pred cchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHHHHHh--------cC--
Q 009957 387 TTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICPHTGVALTALIKLRN--------SG-- 455 (521)
Q Consensus 387 ~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~~l~~--------~g-- 455 (521)
.|.++|+.|+.|+.+. -++++..-+..++|+|+.+++-..+| +.||+.+||++-+++++..++.. .+
T Consensus 334 ~TaADGLAVgRpSgfV--gr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~~~~~g~~~~~~~~ 411 (443)
T COG3048 334 LTAADGLAVGRPSGFV--GRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVCASVEGYRYRHGFS 411 (443)
T ss_pred cccccceeecCccchH--HHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceeeechhHHHHHhhch
Confidence 6889999999999873 23344444558899999999999998 88999999998887776555431 11
Q ss_pred -CCCCCCeEEEEeCCCCCCchHHHHhh
Q 009957 456 -VIGPLDRTVVVSTAHGLKFTQSKIDY 481 (521)
Q Consensus 456 -~i~~~~~vV~v~TG~g~K~~~~~~~~ 481 (521)
.--.+.+.||+.||++.---+.+..|
T Consensus 412 ~~~~~natHlvWaTGG~MVPeeeM~~y 438 (443)
T COG3048 412 AEQLNNATHLVWATGGGMVPEEEMEAY 438 (443)
T ss_pred hhhhcCeeEEEEecCCCcCCHHHHHHH
Confidence 11246688999999988855555433
No 86
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.86 E-value=1.2e-20 Score=186.92 Aligned_cols=285 Identities=17% Similarity=0.176 Sum_probs=204.0
Q ss_pred hcccccCCccccccccccccCCCCcEEEecCCCCC--CCChhHHHHHHHHHHHHHHHhcCCCceEEEE--eCCchHHHHH
Q 009957 160 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISH--TGSFKDLGMTVLVSQVNRLRKMKRPVVGVGC--ASTGDTSAAL 235 (521)
Q Consensus 160 vsl~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nP--TGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~--aSSGN~g~Al 235 (521)
.++.-+.||+..+++++.. +|. ++|+|+|+..+ -|..|.|.+.+++..+. ..| .+++++ +...||..++
T Consensus 9 ~~l~~~pTPiq~L~rls~~-lg~-eiYiKRDD~t~l~~gGNK~RKLefll~eal---~~g--~dTlvT~GgiQSNh~r~t 81 (323)
T COG2515 9 MELIFGPTPIQKLPRLSAH-LGV-EIYIKRDDLTGLAFGGNKIRKLEFLLGEAL---RKG--ADTLVTYGGIQSNHVRQT 81 (323)
T ss_pred cccCCCCChhhhHHHHHHh-cCe-EEEEEcccccccccCccHHHHHHHHHhhhh---hcC--CcEEEEecccchhHHHHH
Confidence 4567788999999999887 774 89999999954 68999999999886542 334 556665 5667999999
Q ss_pred HHHHHhcCCCEEEEccCCc---CCHHhHHhHHhCCCEEEEECCCHHH-----HHHHHHHHHhcCC-ccccC--CCChHhH
Q 009957 236 SAYCASAGIPSIVFLPANK---ISIAQLVQPIANGAFVLSIDTDFDG-----CMKLIREVTSELP-IYLAN--SLNSLRL 304 (521)
Q Consensus 236 Aa~aa~~Gi~~~V~vP~~~---~s~~k~~q~~~~GA~Vi~v~g~~dd-----~~~~~~~~~~~~~-~~~~n--s~Np~~i 304 (521)
|++|++.|++|+.++-.-. .-...+....-.|+++..++...|- +....+++-++-+ -|.+. ..||..-
T Consensus 82 AavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~ 161 (323)
T COG2515 82 AAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLGA 161 (323)
T ss_pred HHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCcccc
Confidence 9999999999999884421 1112334445689999999865443 1222222222211 22222 3589888
Q ss_pred hhHHHHHHHHHHhcCC-CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhh-HHHhhCCcceee
Q 009957 305 EGQKTAAVEILQQFDW-EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLY-LYYKSGWKDFKA 382 (521)
Q Consensus 305 ~G~~T~a~EI~eQl~~-~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~-~~~~~G~~~~~~ 382 (521)
.|+...+.||.+|... ..+|+|||++|+||+.+|+.-||..+ .+..++|++.......-. ..+.
T Consensus 162 lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~------~~~~~ViG~~v~~~~~~~~~qv~-------- 227 (323)
T COG2515 162 LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQL------GPDVEVIGIDVSADPEKLKEQVL-------- 227 (323)
T ss_pred ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhc------cCCCceEEEeecCCHHHHHHHHH--------
Confidence 9999999999999874 57999999999999999999887632 256799999766533211 1111
Q ss_pred cccccchhhhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHH-HhcCCeecc-chHHHHHHHHHHHhcCCCCCC
Q 009957 383 VKASTTFASAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQA-DSTGMFICP-HTGVALTALIKLRNSGVIGPL 460 (521)
Q Consensus 383 ~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l-~~eGi~~eP-ssA~alAa~~~l~~~g~i~~~ 460 (521)
....+.+..++...+..+ ....++.+..+....+|.+++++++ +.|||..|| +++.++.+++++..++.+.++
T Consensus 228 -~L~~~~a~~~~~~~~~~v----~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~ 302 (323)
T COG2515 228 -NLAQATAELLGLGSEADV----LLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDG 302 (323)
T ss_pred -HHHHHHHHHcCCCCCceE----EEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCC
Confidence 011233333444322211 1123344445688999999999997 889999999 999999999999999999999
Q ss_pred CeEEEEeCCC
Q 009957 461 DRTVVVSTAH 470 (521)
Q Consensus 461 ~~vV~v~TG~ 470 (521)
.+|++++||+
T Consensus 303 ~~vLfiHtGG 312 (323)
T COG2515 303 SPVLFIHTGG 312 (323)
T ss_pred CceEEEEcCC
Confidence 9999999997
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=99.80 E-value=2.1e-19 Score=169.32 Aligned_cols=215 Identities=21% Similarity=0.335 Sum_probs=168.5
Q ss_pred CCEEEEccCCcCCHHhHHhHH---hCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCC
Q 009957 244 IPSIVFLPANKISIAQLVQPI---ANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDW 320 (521)
Q Consensus 244 i~~~V~vP~~~~s~~k~~q~~---~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~ 320 (521)
+.+.|++|.+.+++.|..||. ..+++++.|.|+||+|+..++.++.+..+
T Consensus 1 ~~V~il~p~g~~s~iqE~qmttv~d~nv~~~~v~g~~d~~~d~vk~if~d~~f--------------------------- 53 (266)
T KOG2616|consen 1 VSVFILLPKGRCSPIQELQMTTVLDQNVHVFGVEGNFDECQDPVKTIFGDVEF--------------------------- 53 (266)
T ss_pred CceeEeccCCccChhhhcceeeeecCCeeEEEEeeeeccccchHHHHHHHHHH---------------------------
Confidence 357899999999999999986 46899999999999998888776543111
Q ss_pred CCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCcc
Q 009957 321 EVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVS 400 (521)
Q Consensus 321 ~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~ 400 (521)
+ +||+ |+.++|++.++| +.|.|++++|.++... +...|++++|+|..++|
T Consensus 54 -------------------------a-kmGl--PirklviAtNeN-dIl~rf~ktG~yelse-kvaaT~spamDIlvssN 103 (266)
T KOG2616|consen 54 -------------------------A-KMGL--PIRKLVIATNEN-DILHRFVKTGDYELSE-KVAATLSPAMDILVSSN 103 (266)
T ss_pred -------------------------H-HcCC--chhheeeecccc-HHHHHHHHcCchhhhH-HHHhhcCcchhhccccc
Confidence 3 7998 788899999888 8999999999765433 34569999999999999
Q ss_pred HHHHHHHHHhcCCeE------------------------------EEeCHHHHHHHHHHH-HhcCCeeccchHHHHHHHH
Q 009957 401 IDRAVYALKNCNGIV------------------------------EEATEEELMDAMAQA-DSTGMFICPHTGVALTALI 449 (521)
Q Consensus 401 ~~~~l~~l~~~~g~~------------------------------v~Vsd~Ei~~A~~~l-~~eGi~~ePssA~alAa~~ 449 (521)
++|.++.+...++.+ ..||++|+.++|+.. +..+|++|||+|+|+-...
T Consensus 104 ~ER~lwlla~~d~qi~~~l~nefe~~~~~qv~kel~ekls~dftse~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~ 183 (266)
T KOG2616|consen 104 FERVLWLLAGSDSQITRALMNEFERTGSVQVPKELHEKLSEDFTSERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHY 183 (266)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCceecCHHHHHHHHHhhhhhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHH
Confidence 999999887666543 269999999999985 8899999999999998877
Q ss_pred HHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhhcc--------------hhHHhhhhhcCCCcccCCCHHHHHHHHHHHh
Q 009957 450 KLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSK--------------EIKDMACRFANPPVQVKADFGAVMDVLKKYL 515 (521)
Q Consensus 450 ~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (521)
+..++- .++-++++++|+|+.||++++..+... ++..+..+..+---...+|++-++..+...+
T Consensus 184 r~idkt--~ps~~~i~lstAh~aKFa~AV~~Al~~~~s~yn~~~~~h~~~l~~l~~~ek~~~~~~radie~lk~~ie~~~ 261 (266)
T KOG2616|consen 184 RQIDKT--QPSIPYICLSTAHPAKFAEAVNAALSTPESPYNFVALVHPEELCTLMRREKNWMFMLRADIEDLKRQIESHL 261 (266)
T ss_pred HHHhcc--CCCCceEEecccChhhhhHHHHHHhcCCCCCccccchhcHHHHHHHHhhhhhhhhhccccHHHHHHHHHHHH
Confidence 766553 346679999999999999998776433 2222222222222357789999888888766
Q ss_pred cc
Q 009957 516 GS 517 (521)
Q Consensus 516 ~~ 517 (521)
.+
T Consensus 262 ~n 263 (266)
T KOG2616|consen 262 LN 263 (266)
T ss_pred Hh
Confidence 54
No 88
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=96.59 E-value=0.00045 Score=56.79 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=30.5
Q ss_pred eecCCCCCCCCCCccCCCCceeec--CCCCcceeccccchhccCChHHHHHhh
Q 009957 78 KYVPFNAGPDSPEFYSLDEIVYRS--RSGGLLDVQHDMESLKKFDGAYWRDLF 128 (521)
Q Consensus 78 ~~v~~~~~~~cg~~~~~~~~~~~c--~cGGll~~~~d~~~~~~~~~~~~~~~~ 128 (521)
||+ |||+-...++|.++++++ +|||||+| +.+|+++.+.|+.+.
T Consensus 1 ~y~---STR~~~~~vsf~eAil~GlA~DGGLyvP----~~iP~l~~~~l~~l~ 46 (79)
T PF14821_consen 1 KYI---STRGKSPPVSFKEAILQGLAPDGGLYVP----EEIPKLSKEELEELK 46 (79)
T ss_dssp -EE---ETTCCCCEE-HHHHHHH-SBTTSB-EEE----SS-----HHHHHHHT
T ss_pred Cce---eCCCCCCCcCHHHHHHhCCCCCCeeEec----CcCCCCCHHHHHHHH
Confidence 688 999999999999999986 89999998 689999987776653
No 89
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=85.73 E-value=0.67 Score=33.81 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=22.9
Q ss_pred eeecCCCCCCCCCCccCCCCc--eeecC-CCCccee
Q 009957 77 AKYVPFNAGPDSPEFYSLDEI--VYRSR-SGGLLDV 109 (521)
Q Consensus 77 ~~~v~~~~~~~cg~~~~~~~~--~~~c~-cGGll~~ 109 (521)
+.|+ |..||.++.+++. .++|+ ||+.++.
T Consensus 2 ~~y~----C~~CG~~~~~~~~~~~~~Cp~CG~~~~~ 33 (46)
T PRK00398 2 AEYK----CARCGREVELDEYGTGVRCPYCGYRILF 33 (46)
T ss_pred CEEE----CCCCCCEEEECCCCCceECCCCCCeEEE
Confidence 5676 9999999887765 47896 9998764
No 90
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=85.32 E-value=0.27 Score=45.81 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=26.9
Q ss_pred CCccceeecCCCCCCCCCCccCCCCce---eecC-CCCccee
Q 009957 72 NNTFSAKYVPFNAGPDSPEFYSLDEIV---YRSR-SGGLLDV 109 (521)
Q Consensus 72 ~~~~~~~~v~~~~~~~cg~~~~~~~~~---~~c~-cGGll~~ 109 (521)
...=++-|+ |+.|+..|+|+++. |.|+ |||.|+-
T Consensus 103 ~e~~~~~Y~----Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 103 FETNNMFFI----CPNMCVRFTFNEAMELNFTCPRCGAMLDY 140 (158)
T ss_pred hccCCCeEE----CCCCCcEeeHHHHHHcCCcCCCCCCEeee
Confidence 344467788 99999999998775 5696 9999863
No 91
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=85.19 E-value=0.28 Score=46.64 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=26.3
Q ss_pred ccceeecCCCCCCCCCCccCCCCce---eecC-CCCcceeccc
Q 009957 74 TFSAKYVPFNAGPDSPEFYSLDEIV---YRSR-SGGLLDVQHD 112 (521)
Q Consensus 74 ~~~~~~v~~~~~~~cg~~~~~~~~~---~~c~-cGGll~~~~d 112 (521)
.=.+-|+ |+.|+..|+|.++. |.|+ |||.|+- +|
T Consensus 113 ~~~~~Y~----Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~-~d 150 (178)
T PRK06266 113 ENNMFFF----CPNCHIRFTFDEAMEYGFRCPQCGEMLEE-YD 150 (178)
T ss_pred cCCCEEE----CCCCCcEEeHHHHhhcCCcCCCCCCCCee-cc
Confidence 3346788 99999999998765 5695 9999963 44
No 92
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=81.77 E-value=3.3 Score=38.94 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCCEE-EEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCc-cccCCCChHhHhhHHH
Q 009957 232 SAALSAYCASAGIPSI-VFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPI-YLANSLNSLRLEGQKT 309 (521)
Q Consensus 232 g~AlAa~aa~~Gi~~~-V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~-~~~ns~Np~~i~G~~T 309 (521)
|..+..+++..|.++- -+.+.+ .-..-+..+...|-.|..++++.+.+.+.+..+.++++. -.+...++++ ...
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~d-l~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f---~~~ 88 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSD-LFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF---DEE 88 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHH-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC---Chh
Confidence 4677888888887762 222221 112222334567889999999988777777777777642 2333344444 222
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCchhHH
Q 009957 310 AAVEILQQFDWEVPDWVIVPGGNLGNI 336 (521)
Q Consensus 310 ~a~EI~eQl~~~~pD~VvVP~G~Gg~l 336 (521)
-.-+|++++....||.|+|..|+---=
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 334445555444799999999876543
No 93
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=78.88 E-value=0.88 Score=41.81 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=26.0
Q ss_pred CccceeecCCCCCCCCCCccCCCCce--------eecC-CCCccee
Q 009957 73 NTFSAKYVPFNAGPDSPEFYSLDEIV--------YRSR-SGGLLDV 109 (521)
Q Consensus 73 ~~~~~~~v~~~~~~~cg~~~~~~~~~--------~~c~-cGGll~~ 109 (521)
..-+.-|+ |+.|+.+|+|.++. +.|+ ||+.|+.
T Consensus 94 e~~~~~Y~----Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 94 ETNNAYYK----CPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred ccCCcEEE----CcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 44467788 99999999997653 7895 9999864
No 94
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=73.70 E-value=19 Score=34.81 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=56.8
Q ss_pred EEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCcccc-CCCCh
Q 009957 223 VGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLA-NSLNS 301 (521)
Q Consensus 223 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~-ns~Np 301 (521)
+|.+.+|+.|..++.+....+.++.+++=+. +..+..+++..|++++ .+|+++-..+.+.+..-...+.. ...++
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~--~~~~~~~l~~~g~~vv--~~d~~~~~~l~~al~g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP--SSDRAQQLQALGAEVV--EADYDDPESLVAALKGVDAVFSVTPPSHP 77 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS--HHHHHHHHHHTTTEEE--ES-TT-HHHHHHHHTTCSEEEEESSCSCC
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc--chhhhhhhhcccceEe--ecccCCHHHHHHHHcCCceEEeecCcchh
Confidence 4567789999999877777999999988653 3345566778999986 55666555544443221222222 22234
Q ss_pred HhHhhHHHHHHHHHHhcCCCCCcEEE
Q 009957 302 LRLEGQKTAAVEILQQFDWEVPDWVI 327 (521)
Q Consensus 302 ~~i~G~~T~a~EI~eQl~~~~pD~Vv 327 (521)
.....++.+. +.+.+.+ ..+|+
T Consensus 78 ~~~~~~~~li-~Aa~~ag---Vk~~v 99 (233)
T PF05368_consen 78 SELEQQKNLI-DAAKAAG---VKHFV 99 (233)
T ss_dssp CHHHHHHHHH-HHHHHHT----SEEE
T ss_pred hhhhhhhhHH-Hhhhccc---cceEE
Confidence 5555566553 3333433 45553
No 95
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=70.56 E-value=12 Score=35.21 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCcc-ccCCCChHhHhhHHHH
Q 009957 232 SAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIY-LANSLNSLRLEGQKTA 310 (521)
Q Consensus 232 g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~-~~ns~Np~~i~G~~T~ 310 (521)
|..+..+++..|.+..--++....-..-+..+...|-.|..++++.+...+.++.+.++++.. .+...+++.-. .-
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~---~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGP---EE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCh---hh
Confidence 466778888888873222222111111122344568899999988877777777777765422 22223333211 11
Q ss_pred HHHHHHhcCCCCCcEEEEcCCchhHH
Q 009957 311 AVEILQQFDWEVPDWVIVPGGNLGNI 336 (521)
Q Consensus 311 a~EI~eQl~~~~pD~VvVP~G~Gg~l 336 (521)
-.+|++++....||.|+|..|.---=
T Consensus 88 ~~~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 88 EEEIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 11255555545799999999876543
No 96
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=68.91 E-value=62 Score=31.43 Aligned_cols=56 Identities=18% Similarity=0.017 Sum_probs=34.4
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD 276 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~ 276 (521)
+.+|+..+|..|.+++......|.+++++.-..........++...|.++..+..|
T Consensus 12 ~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 12 RALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred EEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence 57888888999999998888889987665322100011122344556666555544
No 97
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=68.40 E-value=3.4 Score=27.94 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.2
Q ss_pred CCCCCCccCCCCceeecC-CCC
Q 009957 85 GPDSPEFYSLDEIVYRSR-SGG 105 (521)
Q Consensus 85 ~~~cg~~~~~~~~~~~c~-cGG 105 (521)
|+.||..|+.+...++|+ ||.
T Consensus 4 C~~CGy~y~~~~~~~~CP~Cg~ 25 (33)
T cd00350 4 CPVCGYIYDGEEAPWVCPVCGA 25 (33)
T ss_pred CCCCCCEECCCcCCCcCcCCCC
Confidence 999999999887888996 875
No 98
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=66.52 E-value=25 Score=33.57 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=43.5
Q ss_pred CceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCC
Q 009957 219 PVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELP 292 (521)
Q Consensus 219 ~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~ 292 (521)
.++.|--.|||-+|.++|-++.+.|-+|+++......+. -.|.+++.|+. .+|..+.+.+.+.+..
T Consensus 19 ~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~-------p~~~~~i~v~s-a~em~~~~~~~~~~~D 84 (185)
T PF04127_consen 19 PVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP-------PPGVKVIRVES-AEEMLEAVKELLPSAD 84 (185)
T ss_dssp SSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-----------TTEEEEE-SS-HHHHHHHHHHHGGGGS
T ss_pred CceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc-------cccceEEEecc-hhhhhhhhccccCcce
Confidence 356677799999999999999999999999986642221 24788888874 5666666666655443
No 99
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=64.33 E-value=1.7e+02 Score=31.07 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=43.8
Q ss_pred EEecCC---CCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchH--HHHHHHHHHhcCCCEEEEccCC
Q 009957 186 WVKHCG---ISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDT--SAALSAYCASAGIPSIVFLPAN 253 (521)
Q Consensus 186 ~vK~E~---~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~~ 253 (521)
++|++. .+|..+|++|.-.++-..-+...+.|++. .++..-||.. ...-|-++..+|.+++++.|-.
T Consensus 157 ~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~-~y~~Nita~~~em~~ra~~a~~~Ga~~vMv~~~~ 228 (364)
T cd08210 157 IIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRT-LYAPNVTGPPTQLLERARFAKEAGAGGVLIAPGL 228 (364)
T ss_pred eeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcc-eEEEecCCCHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 678775 36899999998776543322224456543 3444455555 4455788999999988888764
No 100
>PTZ00323 NAD+ synthase; Provisional
Probab=64.22 E-value=1.8e+02 Score=30.01 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=21.2
Q ss_pred HHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcC
Q 009957 312 VEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELG 350 (521)
Q Consensus 312 ~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~G 350 (521)
|.+.++......+.+|+.+||..-.... |+......|
T Consensus 150 Y~la~~~~~~g~~~lV~GT~N~sE~~~~--Gy~t~~GDg 186 (294)
T PTZ00323 150 FYVAQLLSQEGTPAVVMGTGNFDEDGYL--GYFCKAGDG 186 (294)
T ss_pred HHHHHHHhhcCCCeEEECCCCchhhhHh--chHhhcCCC
Confidence 4454444322456899999999885222 444444444
No 101
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=59.75 E-value=32 Score=32.60 Aligned_cols=100 Identities=10% Similarity=-0.076 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHH
Q 009957 232 SAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAA 311 (521)
Q Consensus 232 g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a 311 (521)
|..+..+++..|.+..--++-...-..-+......|..|..++++.+.+.+.++.+.++++...+-..+.+.-.- -.
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~---~~ 89 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPE---ER 89 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChH---HH
Confidence 355677778887653211221001011112234567889989888777777777777775422111112222111 11
Q ss_pred HHHHHhcCCCCCcEEEEcCCchh
Q 009957 312 VEILQQFDWEVPDWVIVPGGNLG 334 (521)
Q Consensus 312 ~EI~eQl~~~~pD~VvVP~G~Gg 334 (521)
-+|++++....||.|+|..|+--
T Consensus 90 ~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 90 KAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcH
Confidence 33555555457999999998654
No 102
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=59.68 E-value=82 Score=31.58 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=26.6
Q ss_pred HhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCC
Q 009957 264 IANGAFVLSIDTDFDGCMKLIREVTSELPIYLANS 298 (521)
Q Consensus 264 ~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns 298 (521)
...|..|..|+. ...+++.+++.+++.|.+++|.
T Consensus 61 ~~~~g~ILfVgT-K~~a~~~V~~~A~r~g~~yV~~ 94 (252)
T COG0052 61 AANGGKILFVGT-KKQAQEPVKEFAERTGAYYVNG 94 (252)
T ss_pred HcCCCEEEEEec-hHHHHHHHHHHHHHhCCceecC
Confidence 346888888864 4778889999999888777775
No 103
>PRK12496 hypothetical protein; Provisional
Probab=59.54 E-value=6 Score=37.11 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=29.0
Q ss_pred CCcchHHHHHhcCCC--CC------CccceeecCCCCCCCCCCccCCCCceeecC-CCCcc
Q 009957 56 ADENIRDEARRQRST--TN------NTFSAKYVPFNAGPDSPEFYSLDEIVYRSR-SGGLL 107 (521)
Q Consensus 56 ~~~~~~~~~~~~~~~--~~------~~~~~~~v~~~~~~~cg~~~~~~~~~~~c~-cGGll 107 (521)
++-++|..|+...-. .. ..+.=+|+ |++|++.|+-....-.|+ ||.++
T Consensus 97 DD~~~~~vA~~lgi~v~~~~~~~i~~~~~w~~~----C~gC~~~~~~~~~~~~C~~CG~~~ 153 (164)
T PRK12496 97 DDYGIQNVAKKLNIKFENIKTKGIKKVIKWRKV----CKGCKKKYPEDYPDDVCEICGSPV 153 (164)
T ss_pred cHHHHHHHHHHcCCeEeccccccchhheeeeEE----CCCCCccccCCCCCCcCCCCCChh
Confidence 444677777764433 11 12233466 999999997432223595 99876
No 104
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.39 E-value=1.5e+02 Score=28.49 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=36.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcC-CHHhHHhHHhCCCEEEEECCC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SIAQLVQPIANGAFVLSIDTD 276 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~-s~~k~~q~~~~GA~Vi~v~g~ 276 (521)
+.+|+..+|.-|.+++..-...|.+++++.-.+.. ......++...|.++..+..|
T Consensus 6 ~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 56788888999999998888889988775433311 111123345567776665554
No 105
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=58.72 E-value=5.2 Score=35.24 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=27.7
Q ss_pred HhcCCCCCCccceeecCC-CCCCCCCCccCCCCceeecC-CCCc
Q 009957 65 RRQRSTTNNTFSAKYVPF-NAGPDSPEFYSLDEIVYRSR-SGGL 106 (521)
Q Consensus 65 ~~~~~~~~~~~~~~~v~~-~~~~~cg~~~~~~~~~~~c~-cGGl 106 (521)
.+........+....+|- ..|+.||.+++..+..+.|+ ||+.
T Consensus 52 ~~~t~~ega~L~I~~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (115)
T TIGR00100 52 REGTVAEGAKLNIEDEPVECECEDCSEEVSPEIDLYRCPKCHGI 95 (115)
T ss_pred hCCCccCCCEEEEEeeCcEEEcccCCCEEecCCcCccCcCCcCC
Confidence 333333444444444442 45999999999887778895 9975
No 106
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=58.48 E-value=5.8 Score=35.98 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=13.8
Q ss_pred ccceeecCCCCCCCCCCccCCC
Q 009957 74 TFSAKYVPFNAGPDSPEFYSLD 95 (521)
Q Consensus 74 ~~~~~~v~~~~~~~cg~~~~~~ 95 (521)
.+-.+|. |+.||..++++
T Consensus 66 ~~p~~~~----C~~CG~~~~~~ 83 (135)
T PRK03824 66 EEEAVLK----CRNCGNEWSLK 83 (135)
T ss_pred ecceEEE----CCCCCCEEecc
Confidence 3445666 99999999887
No 107
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=58.39 E-value=5.5 Score=34.99 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=25.6
Q ss_pred CCCCccceeecCC-CCCCCCCCccCCCCceeecC-CCCc
Q 009957 70 TTNNTFSAKYVPF-NAGPDSPEFYSLDEIVYRSR-SGGL 106 (521)
Q Consensus 70 ~~~~~~~~~~v~~-~~~~~cg~~~~~~~~~~~c~-cGGl 106 (521)
.....+-...+|- ..|+.||.+++.++..+.|+ ||+.
T Consensus 57 ~egA~L~I~~vp~~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 57 AQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred cCCCEEEEEeeCcEEEcccCCCEEecCCcCccCcCCCCC
Confidence 3444444444442 35999999999887777896 8875
No 108
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=57.90 E-value=8.2 Score=28.04 Aligned_cols=28 Identities=18% Similarity=0.154 Sum_probs=20.7
Q ss_pred eeecCCCCCCCCCCccCCC-CceeecC-CCCcce
Q 009957 77 AKYVPFNAGPDSPEFYSLD-EIVYRSR-SGGLLD 108 (521)
Q Consensus 77 ~~~v~~~~~~~cg~~~~~~-~~~~~c~-cGGll~ 108 (521)
|.|+ |..||.+++.+ ....+|+ ||.-..
T Consensus 1 ~~Y~----C~~Cg~~~~~~~~~~irC~~CG~rIl 30 (44)
T smart00659 1 MIYI----CGECGRENEIKSKDVVRCRECGYRIL 30 (44)
T ss_pred CEEE----CCCCCCEeecCCCCceECCCCCceEE
Confidence 5687 99999998876 3455795 887543
No 109
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=54.74 E-value=5.9 Score=35.63 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=17.6
Q ss_pred CCCCCCCccCCCC-ceee-c-CCCCcc
Q 009957 84 AGPDSPEFYSLDE-IVYR-S-RSGGLL 107 (521)
Q Consensus 84 ~~~~cg~~~~~~~-~~~~-c-~cGGll 107 (521)
.|.+||+.|+-.+ .++. | .|||-.
T Consensus 3 ~Ct~Cg~~f~dgs~eil~GCP~CGg~k 29 (131)
T PF09845_consen 3 QCTKCGRVFEDGSKEILSGCPECGGNK 29 (131)
T ss_pred ccCcCCCCcCCCcHHHHccCcccCCcc
Confidence 4999999998654 3333 9 599864
No 110
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=53.64 E-value=54 Score=28.24 Aligned_cols=29 Identities=21% Similarity=-0.020 Sum_probs=19.9
Q ss_pred HHHHhcCCCCCcEEEEcCCchhHHHHHHH
Q 009957 313 EILQQFDWEVPDWVIVPGGNLGNIYAFYK 341 (521)
Q Consensus 313 EI~eQl~~~~pD~VvVP~G~Gg~l~G~~k 341 (521)
+|.+..++..+|.|+-++|++..+--.++
T Consensus 49 ~i~~~~~~~~~d~vid~~g~~~~~~~~~~ 77 (130)
T PF00107_consen 49 QIRELTGGRGVDVVIDCVGSGDTLQEAIK 77 (130)
T ss_dssp HHHHHTTTSSEEEEEESSSSHHHHHHHHH
T ss_pred ccccccccccceEEEEecCcHHHHHHHHH
Confidence 33344443468999999998877766553
No 111
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=53.19 E-value=1.9e+02 Score=30.74 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=42.5
Q ss_pred EEecCCC---CCCCChhHHHHHHHHHHHHHH-HhcCCCceEEEEeCCchH--HHHHHHHHHhcCCCEEEEccCC
Q 009957 186 WVKHCGI---SHTGSFKDLGMTVLVSQVNRL-RKMKRPVVGVGCASTGDT--SAALSAYCASAGIPSIVFLPAN 253 (521)
Q Consensus 186 ~vK~E~~---nPTGSfKDRga~~~v~~a~~~-~~~g~~~~~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~~ 253 (521)
++|++.. +|..+|++|...+.-.. ++. .+.|++ ..++...++.+ ....|-++..+|.+++++.|..
T Consensus 162 ~Ikdde~~ge~~~~~~eER~~~v~~av-~~a~~~TG~~-~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~ 233 (367)
T cd08205 162 LIKDDELLADQPYAPFEERVRACMEAV-RRANEETGRK-TLYAPNITGDPDELRRRADRAVEAGANALLINPNL 233 (367)
T ss_pred eeeccccccCcccCCHHHHHHHHHHHH-HHHHHhhCCc-ceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 4666643 57999999988754332 222 234543 33444444555 5566789999999998888754
No 112
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=52.05 E-value=11 Score=29.13 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=21.4
Q ss_pred CccceeecCCCCCCCCCCccCCC-CceeecC-CC
Q 009957 73 NTFSAKYVPFNAGPDSPEFYSLD-EIVYRSR-SG 104 (521)
Q Consensus 73 ~~~~~~~v~~~~~~~cg~~~~~~-~~~~~c~-cG 104 (521)
.+..|.|+ |-.||.+-.+. ..+++|+ ||
T Consensus 15 r~~~miYi----CgdC~~en~lk~~D~irCReCG 44 (62)
T KOG3507|consen 15 RTATMIYI----CGDCGQENTLKRGDVIRCRECG 44 (62)
T ss_pred CcccEEEE----eccccccccccCCCcEehhhcc
Confidence 45789999 99999877664 4567895 66
No 113
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=51.57 E-value=3.4 Score=36.26 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=24.9
Q ss_pred HHhcCCCCCCccceeecCC-CCCCCCCCccCCCCceeecC-CCCcc
Q 009957 64 ARRQRSTTNNTFSAKYVPF-NAGPDSPEFYSLDEIVYRSR-SGGLL 107 (521)
Q Consensus 64 ~~~~~~~~~~~~~~~~v~~-~~~~~cg~~~~~~~~~~~c~-cGGll 107 (521)
+.+........+....+|. ..|+.||.+|++++..+.|+ ||+..
T Consensus 51 ~~~~T~~e~a~L~Ie~~p~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 51 LAEGTILEGAELEIEEVPARARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp HHCCSTTTT-EEEEEEE--EEEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred HhCCCCccCCEEEEEecCCcEECCCCCCEEecCCCCCCCcCCcCCC
Confidence 3333333444444444432 34999999999988888896 88863
No 114
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=51.42 E-value=2e+02 Score=29.51 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=64.7
Q ss_pred EEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCC-CCCcEEEEcCCchhHHHHHHHHHHHHH
Q 009957 269 FVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDW-EVPDWVIVPGGNLGNIYAFYKGFKMCH 347 (521)
Q Consensus 269 ~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~-~~pD~VvVP~G~Gg~l~G~~kgf~~l~ 347 (521)
+++.|.|-...-...+.+..++.|||.++..-|..+. + -.|++.+-+. ...-+|++-+=++..+..+...+.+++
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~-~---l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~ 77 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLP-Q---LIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELR 77 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHH-H---HHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHH
Confidence 4556665433334456677899999999865343322 1 2344554321 133467777778888888888888898
Q ss_pred HcCCCCCCCeEEEeccCCCchhhHHHhhC
Q 009957 348 ELGLVDRMPRLVCTQAANANPLYLYYKSG 376 (521)
Q Consensus 348 ~~Gl~~~~prli~Vq~~~~~~l~~~~~~G 376 (521)
+.|. ..+++-.++.. +.|.+-|+.-
T Consensus 78 ~~~~---~~~ilFLdA~d-~~LirRy~eT 102 (284)
T PF03668_consen 78 KKGI---DVRILFLDASD-EVLIRRYSET 102 (284)
T ss_pred hcCC---ceEEEEEECCh-HHHHHHHHhc
Confidence 8885 56999999877 5565555443
No 115
>PRK12939 short chain dehydrogenase; Provisional
Probab=51.29 E-value=2e+02 Score=27.43 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=23.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEE
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVF 249 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 249 (521)
..+++..+|..|.+++-...+.|.+++++
T Consensus 9 ~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 9 RALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 56788888999999998878889887666
No 116
>PRK12828 short chain dehydrogenase; Provisional
Probab=50.74 E-value=90 Score=29.57 Aligned_cols=70 Identities=19% Similarity=0.110 Sum_probs=41.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEEC-CCHHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID-TDFDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~-g~~dd~~~~~~~~~~~ 290 (521)
+.+|++.+|--|.+++-...+.|.+++++.............+...+++++.++ .+.++..+..+++.++
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHH
Confidence 567888889999999977677799876665432111122333445667766655 3344444444444433
No 117
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=48.77 E-value=22 Score=29.13 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCch
Q 009957 441 TGVALTALIKLRNSGVIGPLDRTVVVSTAHGLKFT 475 (521)
Q Consensus 441 sA~alAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~ 475 (521)
+|..+.++..+.++|.+.++++++++..|.|..+.
T Consensus 50 sa~~~~~L~~~~~~g~~~~Gd~vl~~~~G~G~~~~ 84 (90)
T PF08541_consen 50 SASIPINLADALEEGRIKPGDRVLLVGFGAGFSWG 84 (90)
T ss_dssp GGHHHHHHHHHHHTTSSCTTEEEEEEEEETTTEEE
T ss_pred hhhHHHHHHHHHHcCCCCCCCEEEEEEEEhhheeE
Confidence 45556677788888999999999999999997653
No 118
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=48.38 E-value=8.1 Score=41.05 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=24.5
Q ss_pred eecCCCCCCCCCCccCCCCce---eecCCCCccee
Q 009957 78 KYVPFNAGPDSPEFYSLDEIV---YRSRSGGLLDV 109 (521)
Q Consensus 78 ~~v~~~~~~~cg~~~~~~~~~---~~c~cGGll~~ 109 (521)
||= ..-|++|+..+++++.. ++|+||+.+.+
T Consensus 237 KYh-~~~c~~C~~~~~~~~~~~~~~~CpCG~~i~~ 270 (374)
T TIGR00375 237 KYH-QTACEACGEPAVSEDAETACANCPCGGRIKK 270 (374)
T ss_pred ccc-hhhhcccCCcCCchhhhhcCCCCCCCCccee
Confidence 443 34799999999998877 88999998654
No 119
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=47.59 E-value=9.7 Score=33.64 Aligned_cols=36 Identities=6% Similarity=0.054 Sum_probs=23.3
Q ss_pred CCCccceeecCC-CCCCCCCCccCCCCceee-cC-CCCc
Q 009957 71 TNNTFSAKYVPF-NAGPDSPEFYSLDEIVYR-SR-SGGL 106 (521)
Q Consensus 71 ~~~~~~~~~v~~-~~~~~cg~~~~~~~~~~~-c~-cGGl 106 (521)
....+...-+|. ..|+.||..++..+..+. |+ ||+.
T Consensus 59 ega~L~Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 59 KDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred CCCEEEEEecCCEEEhhhCCCccccCCccCCcCcCCCCC
Confidence 334444443332 359999999988766554 95 9986
No 120
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.35 E-value=13 Score=25.45 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=18.7
Q ss_pred eecCCCCCCCCCCccCCCCceeecC-CCCc
Q 009957 78 KYVPFNAGPDSPEFYSLDEIVYRSR-SGGL 106 (521)
Q Consensus 78 ~~v~~~~~~~cg~~~~~~~~~~~c~-cGGl 106 (521)
.|+ |+.||..+.-++....|+ ||..
T Consensus 2 ~~~----C~~CG~i~~g~~~p~~CP~Cg~~ 27 (34)
T cd00729 2 VWV----CPVCGYIHEGEEAPEKCPICGAP 27 (34)
T ss_pred eEE----CCCCCCEeECCcCCCcCcCCCCc
Confidence 466 999999987665666795 8753
No 121
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=47.16 E-value=17 Score=27.73 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=21.3
Q ss_pred CCCCCCCCCccCCCCceeecC-CCCcc
Q 009957 82 FNAGPDSPEFYSLDEIVYRSR-SGGLL 107 (521)
Q Consensus 82 ~~~~~~cg~~~~~~~~~~~c~-cGGll 107 (521)
...|..||+.+..++.+..|+ ||-+|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~Cgapy 31 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPY 31 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcc
Confidence 456899999998778888995 88776
No 122
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=47.11 E-value=2.5e+02 Score=26.48 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=35.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh-HHhHHhCCCEEEEECCCH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ-LVQPIANGAFVLSIDTDF 277 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~~ 277 (521)
+.+++..||..|.+++....+.|.+++++.-.......+ ...+...+.++..+..|.
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 64 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDV 64 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCC
Confidence 568888889999999977777898876665332101111 112334566666665543
No 123
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=46.65 E-value=1.1e+02 Score=29.72 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=39.2
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD---FDGCMKLIREV 287 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~ 287 (521)
..+|+..+|.-|.++|....+.|.+++++.-.. .......+...|.++..+..| .+++.+.++++
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 10 VAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEALGRKFHFITADLIQQKDIDSIVSQA 77 (251)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 568888888889999988888999987764321 122223344556665444433 33444444443
No 124
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=45.87 E-value=10 Score=26.34 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=17.0
Q ss_pred CCCCCCCccCCCCce----eec-CCCCcce
Q 009957 84 AGPDSPEFYSLDEIV----YRS-RSGGLLD 108 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~----~~c-~cGGll~ 108 (521)
.|+.||+.|...... -.| .|||.|.
T Consensus 3 ~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNPPKVEGVCDNCGGELV 32 (36)
T ss_dssp EETTTTEEEETTTB--SSTTBCTTTTEBEB
T ss_pred CcCCCCCccccccCCCCCCCccCCCCCeeE
Confidence 389999988764333 248 4999764
No 125
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=45.87 E-value=11 Score=33.18 Aligned_cols=37 Identities=8% Similarity=-0.064 Sum_probs=24.3
Q ss_pred CCCCccceeecCC-CCCCCCCCccCCCCce-eecC-CCCc
Q 009957 70 TTNNTFSAKYVPF-NAGPDSPEFYSLDEIV-YRSR-SGGL 106 (521)
Q Consensus 70 ~~~~~~~~~~v~~-~~~~~cg~~~~~~~~~-~~c~-cGGl 106 (521)
.....+....+|- ..|+.||..++..+.. +.|+ ||+.
T Consensus 57 ~egA~L~i~~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 57 AEGCKLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred cCCCEEEEEeeCcEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 3444444444442 3599999999876554 6796 9875
No 126
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=45.61 E-value=73 Score=30.87 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=38.4
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHH
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFD 278 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~d 278 (521)
...+|+..+|..|.+++......|.+++++.........-..++...|.++..+..|..
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVT 66 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCC
Confidence 35788888899999999888899998776543321011112334556777766665543
No 127
>PRK06182 short chain dehydrogenase; Validated
Probab=45.33 E-value=1.2e+02 Score=29.81 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=45.4
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEEC-CCHHHHHHHHHHHHhcC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID-TDFDGCMKLIREVTSEL 291 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~-g~~dd~~~~~~~~~~~~ 291 (521)
..+|++.+|--|.+++......|.+++++.-. ..++..+...+++++.+| .+.++..+.++++.++.
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~----~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR----VDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 56888888889999998888889887765432 234444555677777776 34555666666665543
No 128
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=44.93 E-value=20 Score=24.64 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=18.1
Q ss_pred CCCCCCCccCCCCc-------eeec-CCCCccee
Q 009957 84 AGPDSPEFYSLDEI-------VYRS-RSGGLLDV 109 (521)
Q Consensus 84 ~~~~cg~~~~~~~~-------~~~c-~cGGll~~ 109 (521)
+|+.|+..|.+++. ..+| .||..+.+
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~ 37 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYA 37 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEe
Confidence 49999997766532 3568 48887653
No 129
>PRK07109 short chain dehydrogenase; Provisional
Probab=43.48 E-value=89 Score=32.32 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=43.7
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhcC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD---FDGCMKLIREVTSEL 291 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~~ 291 (521)
..+|+..||--|.+++....+.|.+++++.-....-..-...+...|+++..+..| .++..+.+.++.++.
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 56888888888999998888889887776532110011122345678777666544 444555555555443
No 130
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=43.45 E-value=1.8e+02 Score=32.03 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=32.6
Q ss_pred EEEE-eCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC
Q 009957 222 GVGC-ASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT 275 (521)
Q Consensus 222 ~Vv~-aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g 275 (521)
.|++ ..||.++..+|.| +..++++++.|... .....-..+|+.-+.++.
T Consensus 376 aIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~~~---v~R~L~L~wGV~Pil~~~ 425 (473)
T TIGR01064 376 AIVVLTESGRTARLLSKY--RPNAPIIAVTPNER---VARQLALYWGVFPFLVDE 425 (473)
T ss_pred EEEEEcCChHHHHHHHhh--CCCCCEEEEcCCHH---HHHHhhccCCcEEEEeCC
Confidence 3444 4588999888877 66788888888742 122223467988877653
No 131
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.33 E-value=2.9e+02 Score=26.13 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=24.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPA 252 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~ 252 (521)
..+++..+|..|.+++......|.++++++..
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56788888999999997667779988776433
No 132
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=43.22 E-value=3.5e+02 Score=28.38 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=35.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCCCEEE
Q 009957 192 ISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIV 248 (521)
Q Consensus 192 ~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V 248 (521)
.+..-||..--.. . .+.+ .++..|+..++..++.+++.+|.+++|+.+-
T Consensus 44 ~~~~dsf~~~~~~---C---~~~~--~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~ 92 (371)
T cd06388 44 IETANSFAVTNAF---C---SQYS--RGVFAIFGLYDKRSVHTLTSFCSALHISLIT 92 (371)
T ss_pred cCCCChhHHHHHH---H---HHHh--CCceEEEecCCHHHHHHHHHHhhCCCCCeee
Confidence 4677888654432 1 2222 3477888888888899999999999999874
No 133
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=42.30 E-value=15 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=22.6
Q ss_pred ccceeecCCCCCCCCCCccCCC--CceeecC-CCCccee
Q 009957 74 TFSAKYVPFNAGPDSPEFYSLD--EIVYRSR-SGGLLDV 109 (521)
Q Consensus 74 ~~~~~~v~~~~~~~cg~~~~~~--~~~~~c~-cGGll~~ 109 (521)
..+|.|+ |..||++++.. ....+|+ ||.=..+
T Consensus 2 ~~~~~Y~----C~~Cg~~~~~~~~~~~irCp~Cg~rIl~ 36 (49)
T COG1996 2 EAMMEYK----CARCGREVELDQETRGIRCPYCGSRILV 36 (49)
T ss_pred cceEEEE----hhhcCCeeehhhccCceeCCCCCcEEEE
Confidence 3578899 99999999743 2334696 8875433
No 134
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=42.26 E-value=69 Score=32.01 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=40.9
Q ss_pred HhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchh
Q 009957 264 IANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLG 334 (521)
Q Consensus 264 ~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg 334 (521)
...|..|..++++.+.+.+.++.+.++++.-.+...++++-. .-..+|++++....||.|+|..|.-=
T Consensus 102 ~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~---~e~~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 102 GKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTP---EQRQALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCH---HHHHHHHHHHHhcCCCEEEEECCCcH
Confidence 356788998988877666777766666543222222333210 01223556665557999999998653
No 135
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.14 E-value=1.9e+02 Score=27.93 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=43.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEEC-CCHHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID-TDFDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~-g~~dd~~~~~~~~~~~ 290 (521)
..+|+..+|.-|.++|..-...|.++++..-.. ..+...+...++..+.+| .+.++..+.++++.++
T Consensus 9 ~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~---~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 9 VALITGGTRGIGRAIAEAFLREGAKVAVLYNSA---ENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 567888888899999988788898877654332 233344444466666666 3455556666665444
No 136
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=41.82 E-value=1.2e+02 Score=29.87 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=34.7
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD 276 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~ 276 (521)
..+|+..+|..|.+++....+.|.+++++.-.......-...+..+|.++..+..|
T Consensus 12 ~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (278)
T PRK08277 12 VAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKAD 67 (278)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56788888889999998888889987776543210111112234456666555544
No 137
>PRK07478 short chain dehydrogenase; Provisional
Probab=41.66 E-value=1.2e+02 Score=29.48 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=40.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ-LVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
..+|+..+|.-|.+++..-.+.|.+++++.-.. ....+ ..++...|.++..+..| .++..+.++++.++
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQ-AELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 567888888889999977788899876664221 11111 12344556666545433 44455555555444
No 138
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=41.56 E-value=4.1e+02 Score=28.57 Aligned_cols=63 Identities=21% Similarity=0.134 Sum_probs=37.1
Q ss_pred EEEeCCc-hHHHHHHHHHHhcCCCEEEEccCCcCC---HHhHH-hHHhCCC-EEEEECCCHHHHHHHHH
Q 009957 223 VGCASTG-DTSAALSAYCASAGIPSIVFLPANKIS---IAQLV-QPIANGA-FVLSIDTDFDGCMKLIR 285 (521)
Q Consensus 223 Vv~aSSG-N~g~AlAa~aa~~Gi~~~V~vP~~~~s---~~k~~-q~~~~GA-~Vi~v~g~~dd~~~~~~ 285 (521)
|+..|.| ||+..+.+.....+.+++.|.-+-..+ ...+. ....+|| +++.+|..-+-+.+.+.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~ 69 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIF 69 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHH
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHH
Confidence 4556766 778888999888889988887332222 12222 2457898 89988875433434333
No 139
>PRK06194 hypothetical protein; Provisional
Probab=40.12 E-value=1.5e+02 Score=29.35 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=41.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCH---HHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDF---DGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~---dd~~~~~~~~~~~ 290 (521)
+.+|+..+|.-|.+++......|.+++++--...........+...|.++..+.+|. +++.+.+.++.++
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 568888888889999988788898876654221000111122344577776666654 4455555554433
No 140
>PRK12743 oxidoreductase; Provisional
Probab=40.08 E-value=1.3e+02 Score=29.36 Aligned_cols=70 Identities=11% Similarity=0.052 Sum_probs=43.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCC-HHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS-IAQLVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s-~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
+.+|+..+|.-|.+++......|.+++++...+... ..-..++..+|.++..+..| .++..+.+.++.++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 467788888899999988888999887775433111 11123455677666555443 44455555555444
No 141
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=40.01 E-value=1.3e+02 Score=29.34 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=41.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
..+|+..+|..|.+++......|.+++++--...........+...|.++..+..| .++..+.+.++.++
T Consensus 12 ~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 12 IALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 57888888889999998888889987766322100011112244557666555443 33445555554443
No 142
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=39.94 E-value=1.6e+02 Score=23.36 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=25.5
Q ss_pred EeCCchHHHHHHHHHHhcCCCEEEEccCCc
Q 009957 225 CASTGDTSAALSAYCASAGIPSIVFLPANK 254 (521)
Q Consensus 225 ~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~ 254 (521)
.--+|..|.-+|.+.+..|.+++++...+.
T Consensus 4 ViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 4 VIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred EECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 345599999999999999999999997763
No 143
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=39.69 E-value=2.4e+02 Score=26.39 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=24.7
Q ss_pred CCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccC
Q 009957 322 VPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAA 364 (521)
Q Consensus 322 ~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~ 364 (521)
.||. ++.+|.|..+--++.|. .++-+|+ ...|+|-||.-
T Consensus 92 rPdv-ii~nGpg~~vp~~~~~~-l~~~~~~--~~~kiIyIES~ 130 (170)
T PF08660_consen 92 RPDV-IISNGPGTCVPVCLAAK-LLRLLGL--RGSKIIYIESF 130 (170)
T ss_pred CCCE-EEEcCCceeeHHHHHHH-HHHHhhc--cCCcEEEEEee
Confidence 5884 67788777766555433 3445555 35688888754
No 144
>PRK05993 short chain dehydrogenase; Provisional
Probab=39.17 E-value=1.9e+02 Score=28.56 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=42.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC-CHHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT-DFDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g-~~dd~~~~~~~~~~ 289 (521)
..+|++.+|.-|.++|-.....|.++++..-. ..++..+...|++++.+|= +.++..+.+.++.+
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~----~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK----EEDVAALEAEGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHH
Confidence 46788888999999997777889987776432 2344445556777776663 34455555555543
No 145
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=38.95 E-value=4.8e+02 Score=27.28 Aligned_cols=145 Identities=13% Similarity=0.067 Sum_probs=75.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhcCCCEEEEc--------------cCCcCCHH
Q 009957 193 SHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFL--------------PANKISIA 258 (521)
Q Consensus 193 nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v--------------P~~~~s~~ 258 (521)
+..-||..--.. . .+.+ .++..|+..++..++.+++.+|.+.+|+.+..- |. .+..
T Consensus 39 ~~~dsf~~~~~~---C---~~~~--~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~--~~~a 108 (370)
T cd06389 39 EVANSFAVTNAF---C---SQFS--RGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPD--LKGA 108 (370)
T ss_pred cccchHHHHHHH---H---HHhh--cCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecch--hhhH
Confidence 667788654432 2 1222 347788888888889999999999999987531 22 1122
Q ss_pred hHHhHHhCCCE--EEEECCCHHH-HHHHHHHHHhcCCcccc--CCCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCch
Q 009957 259 QLVQPIANGAF--VLSIDTDFDG-CMKLIREVTSELPIYLA--NSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNL 333 (521)
Q Consensus 259 k~~q~~~~GA~--Vi~v~g~~dd-~~~~~~~~~~~~~~~~~--ns~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~G 333 (521)
-...+..+|-+ ++..+.++.- ..+...+.+++.++... ...+.-. ....+-..-++.++....++.||+++ +.
T Consensus 109 i~d~i~~~~wk~vailYdsd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~-~~~~~d~~~~L~~ik~~~~~~Iil~~-~~ 186 (370)
T cd06389 109 LLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINN-DRKDEAYRSLFQDLENKKERRVILDC-ER 186 (370)
T ss_pred HHHHHHhcCCcEEEEEecCchHHHHHHHHHHhhccCCceEEEEEeecCCC-ccchHHHHHHHHHhccccceEEEEEC-CH
Confidence 22334566754 2344554321 12233334444443211 1000000 00111223344556555788888865 44
Q ss_pred hHHHHHHHHHHHHHHcCCC
Q 009957 334 GNIYAFYKGFKMCHELGLV 352 (521)
Q Consensus 334 g~l~G~~kgf~~l~~~Gl~ 352 (521)
..+.-+.+ .++++|+.
T Consensus 187 ~~~~~il~---qa~~~gm~ 202 (370)
T cd06389 187 DKVNDIVD---QVITIGKH 202 (370)
T ss_pred HHHHHHHH---HHHHhCcc
Confidence 44444444 78888874
No 146
>PRK07454 short chain dehydrogenase; Provisional
Probab=38.84 E-value=1.3e+02 Score=28.69 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=25.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+++..+|..|.+++-.....|.+++++.
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 567788889999999988888999877765
No 147
>PRK06483 dihydromonapterin reductase; Provisional
Probab=38.79 E-value=2.1e+02 Score=27.21 Aligned_cols=64 Identities=20% Similarity=0.152 Sum_probs=38.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEEC-CCHHHHHHHHHHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID-TDFDGCMKLIREV 287 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~-g~~dd~~~~~~~~ 287 (521)
+.++++.+|.-|.++|......|.+++++.-.. . .....+...|++.+.+| .+.++..+.+.++
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 68 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--Y-PAIDGLRQAGAQCIQADFSTNAGIMAFIDEL 68 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--h-hHHHHHHHcCCEEEEcCCCCHHHHHHHHHHH
Confidence 467888888899999988788899887764321 1 12233445566665555 2333344444433
No 148
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=38.79 E-value=1.7e+02 Score=28.27 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=41.7
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC---CHHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT---DFDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g---~~dd~~~~~~~~~~~ 290 (521)
..+|+..+|.-|.+++......|.+++++--.. .......++...|.++..+.. +.++..+.++++.++
T Consensus 10 ~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 568888888899999988888899877654321 111112234455766654443 344455555555443
No 149
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=38.17 E-value=20 Score=26.87 Aligned_cols=11 Identities=9% Similarity=-0.124 Sum_probs=8.9
Q ss_pred CCCCCCccCCC
Q 009957 85 GPDSPEFYSLD 95 (521)
Q Consensus 85 ~~~cg~~~~~~ 95 (521)
|+.||..|+.+
T Consensus 4 C~~CgyiYd~~ 14 (50)
T cd00730 4 CRICGYIYDPA 14 (50)
T ss_pred CCCCCeEECCC
Confidence 88899888854
No 150
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=38.14 E-value=2.2e+02 Score=26.49 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=43.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCC-cCC---HHhHHhHHhCCCEEEEECC---CHHHHHHHHHHHHhcC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPAN-KIS---IAQLVQPIANGAFVLSIDT---DFDGCMKLIREVTSEL 291 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~-~~s---~~k~~q~~~~GA~Vi~v~g---~~dd~~~~~~~~~~~~ 291 (521)
..+++...|..|..++-+-...|-.-+|++... ... ...+..++..|++|..+.. +.+++.+...++.++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRF 79 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhcc
Confidence 357777789999999966666665555555433 111 2244557788999977764 4556666666655554
No 151
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=38.11 E-value=28 Score=26.50 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=19.9
Q ss_pred CCCCCCCccCCCC----ceeecC-CCCccee
Q 009957 84 AGPDSPEFYSLDE----IVYRSR-SGGLLDV 109 (521)
Q Consensus 84 ~~~~cg~~~~~~~----~~~~c~-cGGll~~ 109 (521)
.|+.||.++.+.+ .+..|+ ||--|+|
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleV 34 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEV 34 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEE
Confidence 5999999888765 344695 8987776
No 152
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.91 E-value=2.4e+02 Score=29.16 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=49.8
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCC-CEEEEEC-CCHHHHHHHHHHHHhcCC
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANG-AFVLSID-TDFDGCMKLIREVTSELP 292 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~G-A~Vi~v~-g~~dd~~~~~~~~~~~~~ 292 (521)
...+++++++-.|.++|.--++.|-+++++==....-.+...+++..| |+-..|| ++++|..+.++++-++.|
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 356777776677999997777777755444322222345566666667 5557777 678899999998888866
No 153
>PRK07201 short chain dehydrogenase; Provisional
Probab=37.79 E-value=5.2e+02 Score=29.03 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=40.7
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHHhcC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ-LVQPIANGAFVLSIDTD---FDGCMKLIREVTSEL 291 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~~ 291 (521)
..+|++.||..|.+++..-.+.|.+++++.-.. ....+ ...+...|.++..+..| .+++.+.++++.++.
T Consensus 373 ~vlItGas~giG~~la~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 373 VVLITGASSGIGRATAIKVAEAGATVFLVARNG-EALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 567888888899999977777898877765332 11111 12234456666555443 444555555554443
No 154
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=37.77 E-value=6e+02 Score=28.14 Aligned_cols=249 Identities=13% Similarity=0.112 Sum_probs=121.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHh-cCCCce-EEEEeCCchHHHHHH----HHHHhc-CCCEEEEccCCcCCHHhHHhHH
Q 009957 192 ISHTGSFKDLGMTVLVSQVNRLRK-MKRPVV-GVGCASTGDTSAALS----AYCASA-GIPSIVFLPANKISIAQLVQPI 264 (521)
Q Consensus 192 ~nPTGSfKDRga~~~v~~a~~~~~-~g~~~~-~Vv~aSSGN~g~AlA----a~aa~~-Gi~~~V~vP~~~~s~~k~~q~~ 264 (521)
..+|||-| .+++++..++.+.. ...... .++.+-|--.+..++ .++... ++.+..++.... -..|..++.
T Consensus 72 ~A~TGsGK--T~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~-~~~q~~~l~ 148 (513)
T COG0513 72 QAQTGTGK--TAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVS-IRKQIEALK 148 (513)
T ss_pred ECCCCChH--HHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCC-HHHHHHHHh
Confidence 47999999 77777887776542 111111 466666677777765 455555 677777776532 234445555
Q ss_pred hCCCEEE-EECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHH
Q 009957 265 ANGAFVL-SIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGF 343 (521)
Q Consensus 265 ~~GA~Vi-~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf 343 (521)
. |++|+ ..+|..-|..+.-.--.....+...+..+=..=.|...--.+|+.+++...--.+|.++=.- .+..+.+.+
T Consensus 149 ~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l~~~~ 226 (513)
T COG0513 149 R-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIRELARRY 226 (513)
T ss_pred c-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHHHHHHH
Confidence 4 78875 34565443222110001111223333222222226666667778887742222455555444 344443322
Q ss_pred HHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchhhhhccCCCccHHHHHHHHHhcC--CeEEEeCHH
Q 009957 344 KMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFASAIQIGDPVSIDRAVYALKNCN--GIVEEATEE 421 (521)
Q Consensus 344 ~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia~~i~i~~P~~~~~~l~~l~~~~--g~~v~Vsd~ 421 (521)
+ ..|..|.+.+.........+.. .+...... ......+..++.... -.++-+...
T Consensus 227 -------l--~~p~~i~v~~~~~~~~~~~i~q---~~~~v~~~-----------~~k~~~L~~ll~~~~~~~~IVF~~tk 283 (513)
T COG0513 227 -------L--NDPVEIEVSVEKLERTLKKIKQ---FYLEVESE-----------EEKLELLLKLLKDEDEGRVIVFVRTK 283 (513)
T ss_pred -------c--cCCcEEEEccccccccccCceE---EEEEeCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCcH
Confidence 1 2455666664332101000000 01111100 011222233333222 257778777
Q ss_pred HHHHHHHH-HHhcCCeecc-chHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Q 009957 422 ELMDAMAQ-ADSTGMFICP-HTGVALTALIKLRNSGVIGPLDRTVVVSTAH 470 (521)
Q Consensus 422 Ei~~A~~~-l~~eGi~~eP-ssA~alAa~~~l~~~g~i~~~~~vV~v~TG~ 470 (521)
...+.+.. |.+.|+-+.. |+-..-..-.+..+. +..++.-|+|+|+-
T Consensus 284 ~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~--F~~g~~~vLVaTDv 332 (513)
T COG0513 284 RLVEELAESLRKRGFKVAALHGDLPQEERDRALEK--FKDGELRVLVATDV 332 (513)
T ss_pred HHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHH--HHcCCCCEEEEech
Confidence 77777665 6888887777 665544432222222 22445567777754
No 155
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=37.54 E-value=2.3e+02 Score=27.42 Aligned_cols=54 Identities=20% Similarity=0.135 Sum_probs=34.8
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD 276 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~ 276 (521)
..+|++.+|.-|.++|....+.|.+++++-... ......++...|.++..+..|
T Consensus 12 ~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~D 65 (253)
T PRK08993 12 VAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE--PTETIEQVTALGRRFLSLTAD 65 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEecCcc--hHHHHHHHHhcCCeEEEEECC
Confidence 578888889999999988888898876552221 222334445556555544433
No 156
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=37.12 E-value=19 Score=27.82 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=19.7
Q ss_pred CCCCCCCccCCCCceeec-CCCCcceeccccchhccCChH
Q 009957 84 AGPDSPEFYSLDEIVYRS-RSGGLLDVQHDMESLKKFDGA 122 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~~c-~cGGll~~~~d~~~~~~~~~~ 122 (521)
.|+.||. |.+.| .| .|||-..+.+ =|+||++
T Consensus 7 kC~~cg~-YTLke---~Cp~CG~~t~~~~----PprFSPe 38 (59)
T COG2260 7 KCPKCGR-YTLKE---KCPVCGGDTKVPH----PPRFSPE 38 (59)
T ss_pred cCcCCCc-eeecc---cCCCCCCccccCC----CCCCCcc
Confidence 6888874 55543 59 4999877643 2355554
No 157
>PRK07814 short chain dehydrogenase; Provisional
Probab=36.90 E-value=3e+02 Score=26.81 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=23.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+|++.+|--|.+++-.....|.+++++.
T Consensus 12 ~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 12 VAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 568888888889999977777898776654
No 158
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=36.82 E-value=2e+02 Score=28.31 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCCceEEEEe-CCch---HHHHHHHHHHhcCCCEEEEccCCcCCH-HhHHhHHhCCC
Q 009957 217 KRPVVGVGCA-STGD---TSAALSAYCASAGIPSIVFLPANKISI-AQLVQPIANGA 268 (521)
Q Consensus 217 g~~~~~Vv~a-SSGN---~g~AlAa~aa~~Gi~~~V~vP~~~~s~-~k~~q~~~~GA 268 (521)
|...+.++++ |.|. +..+||++|++.|=+.++++|+. .+. .-...|..+|.
T Consensus 39 G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~-~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 39 GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDE-QSLSEYKKALGEAGL 94 (218)
T ss_pred cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHhhccc
Confidence 4334455554 5553 57899999999999999999985 232 22233544554
No 159
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=36.60 E-value=93 Score=28.43 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=34.6
Q ss_pred EEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHH
Q 009957 223 VGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDG 279 (521)
Q Consensus 223 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd 279 (521)
+|...||+.|..++-.....|.++++++-.. + +... ..+++++ .+|+.|
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~--~--~~~~--~~~~~~~--~~d~~d 50 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSP--S--KAED--SPGVEII--QGDLFD 50 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSG--G--GHHH--CTTEEEE--ESCTTC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCc--h--hccc--ccccccc--eeeehh
Confidence 5667889999999999999999999988653 1 3333 4556655 444433
No 160
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.54 E-value=1.4e+02 Score=29.07 Aligned_cols=30 Identities=10% Similarity=-0.091 Sum_probs=22.7
Q ss_pred eEEEEeCC--chHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCAST--GDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSS--GN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+|+..+ +.-|.++|..-.+.|.++++..
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEec
Confidence 45666665 5789999988888999877654
No 161
>PRK08813 threonine dehydratase; Provisional
Probab=36.39 E-value=3.9e+02 Score=28.14 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=21.8
Q ss_pred EEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchh
Q 009957 325 WVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPL 369 (521)
Q Consensus 325 ~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l 369 (521)
.|...+||.|...+.+ ++.+|+ +++.+-|++.+..
T Consensus 84 VV~aSsGN~G~alA~a-----a~~~Gi-----~~~IvvP~~~~~~ 118 (349)
T PRK08813 84 VICASAGNHAQGVAWS-----AYRLGV-----QAITVMPHGAPQT 118 (349)
T ss_pred EEEECCCHHHHHHHHH-----HHHcCC-----CEEEEEcCCCCHH
Confidence 4455567777766665 567775 4555567776643
No 162
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=36.31 E-value=1.4e+02 Score=30.80 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHhcCCCEEEEccCCc-CCHHhHHhHHhCCCEEEEEC
Q 009957 229 GDTSAALSAYCASAGIPSIVFLPANK-ISIAQLVQPIANGAFVLSID 274 (521)
Q Consensus 229 GN~g~AlAa~aa~~Gi~~~V~vP~~~-~s~~k~~q~~~~GA~Vi~v~ 274 (521)
+|.+.|+...+++.|+++.+..|++- .++.-+.+++..|++|...+
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 58899999999999999999999973 34433445566788876443
No 163
>PRK07035 short chain dehydrogenase; Provisional
Probab=36.21 E-value=1.8e+02 Score=28.10 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=24.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+|+..+|.-|.+++....+.|.+++++.
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 568888888899999988888898877664
No 164
>PRK08643 acetoin reductase; Validated
Probab=36.15 E-value=1.7e+02 Score=28.21 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=39.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhH-HhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQL-VQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~-~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
..+|+..+|..|.+++.+....|.+++++.-.. ....+. ..+...|.++..+..| .+...+..+++.+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE-ETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 467888888899999988888898876654221 111111 1234456666555544 3344444555443
No 165
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=35.98 E-value=1.6e+02 Score=26.23 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=42.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHH----hHHhCCCEEEEECC---CHHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLV----QPIANGAFVLSIDT---DFDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~----q~~~~GA~Vi~v~g---~~dd~~~~~~~~~~~ 290 (521)
..+|+..++.-|.+++..-.+.|-..++++..+ .+..+.. .+...|.++..+.. +.+++.+.++++.++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRS-EDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-CHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 357788888999999965555677666666654 1122222 24567887766654 344556666665533
No 166
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=35.50 E-value=1.6e+02 Score=28.72 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=23.1
Q ss_pred EEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 222 GVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 222 ~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
.+|+..+|.-|.++|......|.++++..
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 57788888899999988788898866653
No 167
>PRK08862 short chain dehydrogenase; Provisional
Probab=35.24 E-value=1.7e+02 Score=28.27 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=22.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEE
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVF 249 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 249 (521)
..++++.|+.-|.++|...+..|.+++++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILC 35 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 46777777777999998888889886664
No 168
>PRK05867 short chain dehydrogenase; Provisional
Probab=35.22 E-value=1.7e+02 Score=28.25 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=23.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+|+..+|.-|.+++..-.+.|.+++++.
T Consensus 11 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~ 40 (253)
T PRK05867 11 RALITGASTGIGKRVALAYVEAGAQVAIAA 40 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 567888888889999988788898876653
No 169
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=34.95 E-value=3.5e+02 Score=30.66 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=26.5
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEcc
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 251 (521)
...+|++.+|..|.+++....+.|.+++++.-
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~R 112 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVR 112 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 45678888899999999888888999888753
No 170
>PRK06172 short chain dehydrogenase; Provisional
Probab=34.50 E-value=1.7e+02 Score=28.19 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=34.3
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD 276 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~ 276 (521)
.+.+|+..+|.-|.+++......|.+++++.=...........+...|.++..+..|
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACD 64 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 356888888999999998888889886665422110011123344556655444443
No 171
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=34.40 E-value=22 Score=33.66 Aligned_cols=30 Identities=10% Similarity=-0.045 Sum_probs=21.3
Q ss_pred ccceeecCCCCCCCCCCccCCCCceeec-CCCCccee
Q 009957 74 TFSAKYVPFNAGPDSPEFYSLDEIVYRS-RSGGLLDV 109 (521)
Q Consensus 74 ~~~~~~v~~~~~~~cg~~~~~~~~~~~c-~cGGll~~ 109 (521)
.+.-+|+ |.+|++.|+ .-.-.| .|||.+..
T Consensus 135 v~~w~~r----C~GC~~~f~--~~~~~Cp~CG~~~~~ 165 (177)
T COG1439 135 VRKWRLR----CHGCKRIFP--EPKDFCPICGSPLKR 165 (177)
T ss_pred EeeeeEE----EecCceecC--CCCCcCCCCCCceEE
Confidence 3455666 999999998 223358 49999754
No 172
>PRK06128 oxidoreductase; Provisional
Probab=33.82 E-value=1.9e+02 Score=29.10 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=42.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcC-CHH-hHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SIA-QLVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~-s~~-k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
+.+|+..+|--|.+++..-.+.|.++++..-.... ... ....+...|.++..+..| .+++.+.+.++.++
T Consensus 57 ~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 57 KALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 57888888899999998878889988776532111 111 222345567666655544 34455555555443
No 173
>PRK08628 short chain dehydrogenase; Provisional
Probab=33.72 E-value=2.7e+02 Score=26.88 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=41.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCH---HHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDF---DGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~---dd~~~~~~~~~~~ 290 (521)
..+|+..+|-.|.++|..-.+.|.+++++.-.. ....-..++...|.++..+..|. ++..+...++.+.
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSA-PDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCCh-hhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 567888888899999988888999987765332 12212234455666665555443 3344444444433
No 174
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=33.59 E-value=5.3e+02 Score=27.02 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=24.1
Q ss_pred hCCCEEEEECCCHHHHHHHHHHHHhcCCccccCC
Q 009957 265 ANGAFVLSIDTDFDGCMKLIREVTSELPIYLANS 298 (521)
Q Consensus 265 ~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns 298 (521)
..|.+|..|.... ...+.+++.+++.+.+++|.
T Consensus 57 ~~gg~iLfVgTk~-~~~~~V~~~A~~~g~~yV~~ 89 (326)
T PRK12311 57 AKGGRVLFVGTKR-QAQDAVADAAKRSAQYFVNS 89 (326)
T ss_pred hCCCEEEEEeCcH-HHHHHHHHHHHHhCCeeeCC
Confidence 4688888887664 46778888888777666664
No 175
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=33.40 E-value=14 Score=31.75 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=17.8
Q ss_pred CCCCCCCccCC-CCceee-c-CCCCcc
Q 009957 84 AGPDSPEFYSL-DEIVYR-S-RSGGLL 107 (521)
Q Consensus 84 ~~~~cg~~~~~-~~~~~~-c-~cGGll 107 (521)
.|.+||+.|+- ++.+++ | .||+-+
T Consensus 4 ~CtrCG~vf~~g~~~il~GCp~CG~nk 30 (112)
T COG3364 4 QCTRCGEVFDDGSEEILSGCPKCGCNK 30 (112)
T ss_pred eecccccccccccHHHHccCccccchh
Confidence 48999999987 444554 9 599754
No 176
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. There is a conserved CGN sequence motif.
Probab=33.34 E-value=16 Score=27.10 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.8
Q ss_pred CCccceeecCCCCCCCCCC
Q 009957 72 NNTFSAKYVPFNAGPDSPE 90 (521)
Q Consensus 72 ~~~~~~~~v~~~~~~~cg~ 90 (521)
+-.++.+|. .|+.||.
T Consensus 6 ~~~L~~kY~---~Cp~CGN 21 (49)
T PF12677_consen 6 TLKLSNKYC---KCPKCGN 21 (49)
T ss_pred hcchhhhhc---cCcccCC
Confidence 345678899 9999985
No 177
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=33.21 E-value=84 Score=34.92 Aligned_cols=100 Identities=23% Similarity=0.271 Sum_probs=60.3
Q ss_pred cccCCccccccccccccCCCCcEEEecCCCCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchHHHHHHHHHHhc
Q 009957 163 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA 242 (521)
Q Consensus 163 ~eG~TPL~~~~~l~~~~lg~~~l~vK~E~~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~ 242 (521)
..|.|||.-.++ ++ .+|+ +|+|+.-. ...|.|. .+++++| .++|.+ +||.-.-.|+.++.+
T Consensus 424 ~~GGTPL~V~~~-~~-~~GV--I~LkDivK---~Gi~ERf--------~elR~Mg--IkTvM~--TGDN~~TAa~IA~EA 484 (681)
T COG2216 424 RLGGTPLVVVEN-GR-ILGV--IYLKDIVK---PGIKERF--------AELRKMG--IKTVMI--TGDNPLTAAAIAAEA 484 (681)
T ss_pred hcCCCceEEEEC-CE-EEEE--EEehhhcc---hhHHHHH--------HHHHhcC--CeEEEE--eCCCHHHHHHHHHHh
Confidence 358899976543 12 2564 88887644 3355553 3567777 566663 477766667788889
Q ss_pred CCCEEEEccCCcCCHHhHHhHH--hCCCEEEEECCCH-HHHHHHH
Q 009957 243 GIPSIVFLPANKISIAQLVQPI--ANGAFVLSIDTDF-DGCMKLI 284 (521)
Q Consensus 243 Gi~~~V~vP~~~~s~~k~~q~~--~~GA~Vi~v~g~~-dd~~~~~ 284 (521)
|++-++- + ..++.|+..++ ..+.+++...||- .|+-.++
T Consensus 485 GVDdfiA--e-atPEdK~~~I~~eQ~~grlVAMtGDGTNDAPALA 526 (681)
T COG2216 485 GVDDFIA--E-ATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALA 526 (681)
T ss_pred Cchhhhh--c-CChHHHHHHHHHHHhcCcEEEEcCCCCCcchhhh
Confidence 9887652 2 24555666554 3456777776652 3443333
No 178
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=32.99 E-value=2e+02 Score=27.67 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=40.8
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ-LVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
+.+|++.+|.-|.+++......|.+++++.-.. ....+ ...+...|.++..+..| .++..+.+.++.+.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNE-ETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 357778889999999988888898766554321 11111 12345567666555544 44445555555443
No 179
>PRK08589 short chain dehydrogenase; Validated
Probab=32.76 E-value=2.2e+02 Score=28.00 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=41.1
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC---CHHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT---DFDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g---~~dd~~~~~~~~~~~ 290 (521)
..+|+..+|.-|.+++..-...|.+++++.-.. ........+...|.++..+.. +.++..+.++++.++
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIAE-AVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcH-HHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 567888888889999977778899887764331 111112334455655544443 344455555555544
No 180
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.71 E-value=2.1e+02 Score=27.38 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=25.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEcc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 251 (521)
+.+|+..+|.-|.+++..-...|.++++...
T Consensus 7 ~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 5788888899999999888888988877554
No 181
>PRK08017 oxidoreductase; Provisional
Probab=32.68 E-value=2.5e+02 Score=26.96 Aligned_cols=63 Identities=10% Similarity=-0.007 Sum_probs=40.1
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC-CHHHHHHHHHHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT-DFDGCMKLIREV 287 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g-~~dd~~~~~~~~ 287 (521)
+.+|++.+|.-|.+++......|.+++++... ..++..+...|++.+.++- +.++..+..+++
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i 67 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK----PDDVARMNSLGFTGILLDLDDPESVERAADEV 67 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC----HHHhHHHHhCCCeEEEeecCCHHHHHHHHHHH
Confidence 46777888999999998888889887665332 2344445566877776653 344444444443
No 182
>PRK06139 short chain dehydrogenase; Provisional
Probab=32.32 E-value=1.7e+02 Score=30.27 Aligned_cols=69 Identities=22% Similarity=0.119 Sum_probs=41.4
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ-LVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
..+|+..||--|.+++......|.+++++.-.. ....+ ...+...|+++..+..| .++..+.+.++.+.
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~-~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDE-EALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 567778888889999988888999876654221 11111 12345678776555433 44455555555443
No 183
>PRK05866 short chain dehydrogenase; Provisional
Probab=32.19 E-value=1.8e+02 Score=29.26 Aligned_cols=31 Identities=10% Similarity=0.017 Sum_probs=24.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEcc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 251 (521)
..+|++.+|.-|.+++......|.+++++.-
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R 72 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVAR 72 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 4677888888899999877888988776643
No 184
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.08 E-value=2e+02 Score=27.84 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=49.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCccccCC-CChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHH
Q 009957 267 GAFVLSIDTDFDGCMKLIREVTSELPIYLANS-LNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKM 345 (521)
Q Consensus 267 GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns-~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~ 345 (521)
|.+|..|.... .++..+++.++..+.++++. +-|..+.-+.+ -+...||.++| +.-.....++- |
T Consensus 61 ~~~ILfVgtk~-~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~--------~~~~~Pdlliv-~dp~~~~~Av~----E 126 (196)
T TIGR01012 61 PEDILVVSARI-YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ--------KAFREPEVVVV-TDPRADHQALK----E 126 (196)
T ss_pred CCeEEEEecCH-HHHHHHHHHHHHhCCceECCeeCCCCCCCccc--------cccCCCCEEEE-ECCccccHHHH----H
Confidence 66777776554 46677888877776555543 21111111111 12347998887 44555555555 8
Q ss_pred HHHcCCCCCCCeEEEeccCCCch
Q 009957 346 CHELGLVDRMPRLVCTQAANANP 368 (521)
Q Consensus 346 l~~~Gl~~~~prli~Vq~~~~~~ 368 (521)
+.++|+ .+||+-.++|+|
T Consensus 127 A~~l~I-----P~Iai~DTn~dp 144 (196)
T TIGR01012 127 ASEVGI-----PIVALCDTDNPL 144 (196)
T ss_pred HHHcCC-----CEEEEeeCCCCC
Confidence 999986 367877778764
No 185
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.08 E-value=4e+02 Score=24.68 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=19.5
Q ss_pred eEEEEeCCchH-H--HHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDT-S--AALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~-g--~AlAa~aa~~Gi~~~V~v 250 (521)
+.++-+.+||. | .++|.+-...|+++.|+.
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEEE
Confidence 44444555877 3 455667777899998854
No 186
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=32.07 E-value=40 Score=21.33 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=10.1
Q ss_pred CCCCCCccCCC--CceeecC-CC
Q 009957 85 GPDSPEFYSLD--EIVYRSR-SG 104 (521)
Q Consensus 85 ~~~cg~~~~~~--~~~~~c~-cG 104 (521)
|..||..+... .+.|.|+ ||
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcccCceEeCCCCC
Confidence 34565555443 2455664 54
No 187
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=32.00 E-value=3.3e+02 Score=23.43 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=38.3
Q ss_pred EEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC---CHHHHHHHHHHHHhcCC
Q 009957 222 GVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT---DFDGCMKLIREVTSELP 292 (521)
Q Consensus 222 ~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g---~~dd~~~~~~~~~~~~~ 292 (521)
.|+...||.++..++.|. -..+++++.|... . ..+....+|..-+.++. +.++..+.+.+.+.+.+
T Consensus 20 Ivv~T~sG~ta~~isk~R--P~~pIiavt~~~~--~-~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~g 88 (117)
T PF02887_consen 20 IVVFTESGRTARLISKYR--PKVPIIAVTPNES--V-ARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKERG 88 (117)
T ss_dssp EEEE-SSSHHHHHHHHT---TSSEEEEEESSHH--H-HHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCchHHHHHHhhC--CCCeEEEEcCcHH--H-HhhhhcccceEEEEeccccccHHHHHHHHHHHHHHcC
Confidence 455677899998888763 4478888888742 1 22223567988876664 23444444444444433
No 188
>PRK05693 short chain dehydrogenase; Provisional
Probab=31.97 E-value=2.5e+02 Score=27.58 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=43.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEEC-CCHHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID-TDFDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~-g~~dd~~~~~~~~~~~ 290 (521)
..+|++.||-.|.+++......|.+++++.-. ..++..+...|.+.+.+| .+.++..+.++++.++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK----AEDVEALAAAGFTAVQLDVNDGAALARLAEELEAE 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 35777788888999998888889887765432 234444555677776666 3445555566555443
No 189
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.92 E-value=2.1e+02 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=23.7
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+|+..+|.-|.+++......|.+++++.
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 567778888999999988888898766554
No 190
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=31.83 E-value=2.9e+02 Score=26.39 Aligned_cols=54 Identities=19% Similarity=0.087 Sum_probs=34.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD 276 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~ 276 (521)
+.+|+..+|.-|.+++......|..++++.-.. ......++...+.++..+..|
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~D 60 (248)
T TIGR01832 7 VALVTGANTGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGRRFLSLTAD 60 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCCceEEEECC
Confidence 567878888889999988888899877765321 112223344556555444443
No 191
>PRK05876 short chain dehydrogenase; Provisional
Probab=31.69 E-value=2.2e+02 Score=28.32 Aligned_cols=68 Identities=15% Similarity=-0.016 Sum_probs=40.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHH--hHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIA--QLVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~--k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
..+|+..+|.-|.++|..-.+.|.++++.. .+ .+.. -...+...|.++..+..| .++..+.+.++.++
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~-r~-~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGD-VD-KPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEe-CC-HHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 567888888889999988888899866543 22 1111 112244557666555443 44555555555444
No 192
>PRK08278 short chain dehydrogenase; Provisional
Probab=31.69 E-value=3.1e+02 Score=26.98 Aligned_cols=31 Identities=10% Similarity=0.028 Sum_probs=25.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEcc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 251 (521)
..+|+..+|--|.++|-.....|.+++++..
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r 38 (273)
T PRK08278 8 TLFITGASRGIGLAIALRAARDGANIVIAAK 38 (273)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEec
Confidence 5677777888899999888888998877764
No 193
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=31.53 E-value=1.1e+02 Score=30.20 Aligned_cols=89 Identities=26% Similarity=0.280 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHh-----------------------------HHhCCCEEEEECCCHHH
Q 009957 229 GDTSAALSAYCASAGIPSIVFLPANKISIAQLVQ-----------------------------PIANGAFVLSIDTDFDG 279 (521)
Q Consensus 229 GN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q-----------------------------~~~~GA~Vi~v~g~~dd 279 (521)
|+...+|+-+-++.|.++.|++|.- +..+... ....|++++.++...
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~y--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~v~v~~i~~~~-- 94 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPKY--GFIDEEYFQLEPVRRLSVPFGGPVPVGVWYEVRVYRYPVDGVPVYFIDNPE-- 94 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-T--HHHHHHCTTEEEEEEES-STTCEEEEE----EEEEEEEETTEEEEEEESHH--
T ss_pred hHHHHHHHHHHHhcCCeEEEEEccc--hhhhhhhhcceEEEEeccccccccccccceEEEEEEEEcCCccEEEecChh--
Confidence 4666778878888999999999974 2222211 011366666666432
Q ss_pred HHHHHHHHHhcCCccccC----CCChHhHhhHHHHHHHHHHhcCCCCCcEEEEc
Q 009957 280 CMKLIREVTSELPIYLAN----SLNSLRLEGQKTAAVEILQQFDWEVPDWVIVP 329 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~~n----s~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP 329 (521)
...+.+.|.-+ ..|..|..-...++.|++.+++| .||.|-+=
T Consensus 95 -------~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~-~pDIIH~h 140 (245)
T PF08323_consen 95 -------YFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGW-KPDIIHCH 140 (245)
T ss_dssp -------HHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT--S-SEEEEE
T ss_pred -------hccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCC-CCCEEEec
Confidence 33444555432 23555655566788999999987 69987544
No 194
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=31.46 E-value=21 Score=36.30 Aligned_cols=32 Identities=3% Similarity=-0.090 Sum_probs=26.0
Q ss_pred EEEEeCCchH--HHHHHHHHHhcCCCEEEEccCC
Q 009957 222 GVGCASTGDT--SAALSAYCASAGIPSIVFLPAN 253 (521)
Q Consensus 222 ~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~~ 253 (521)
.++.+||+.. ++.+..++.+.|.+++++=|..
T Consensus 203 llviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 236 (271)
T PTZ00409 203 LLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISK 236 (271)
T ss_pred EEEECCCCcccCHHHHHHHHHHcCCCEEEECCCC
Confidence 4667888876 7778888899999999888874
No 195
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=30.96 E-value=85 Score=30.34 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=20.5
Q ss_pred EEEeCHHH-HHHHHHHH-HhcCCeecc-chHHHHHHH
Q 009957 415 VEEATEEE-LMDAMAQA-DSTGMFICP-HTGVALTAL 448 (521)
Q Consensus 415 ~v~Vsd~E-i~~A~~~l-~~eGi~~eP-ssA~alAa~ 448 (521)
++.|+|++ +.++..+| +..|+-+.. +++..+-+.
T Consensus 7 V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~ 43 (202)
T COG4566 7 VHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAA 43 (202)
T ss_pred EEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhh
Confidence 44555444 45666664 788888877 455555443
No 196
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=30.82 E-value=64 Score=29.50 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=25.3
Q ss_pred EeCCchHHHHHHHHHHhcCCCEEEEccCC
Q 009957 225 CASTGDTSAALSAYCASAGIPSIVFLPAN 253 (521)
Q Consensus 225 ~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~ 253 (521)
.--+||.|.|+|...+..|.++.++.++.
T Consensus 4 ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 4 VIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 34569999999999999999999998864
No 197
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=30.68 E-value=2.6e+02 Score=27.00 Aligned_cols=30 Identities=17% Similarity=-0.076 Sum_probs=24.1
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+|+..+|.-|.+++....+.|.+++++.
T Consensus 11 ~~lItGas~giG~~ia~~L~~~G~~vvl~~ 40 (254)
T PRK08085 11 NILITGSAQGIGFLLATGLAEYGAEIIIND 40 (254)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEc
Confidence 568888888999999988788898776643
No 198
>PRK06720 hypothetical protein; Provisional
Probab=30.66 E-value=2.8e+02 Score=25.67 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=23.4
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEcc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 251 (521)
..++++.+|--|.+++......|.+++++..
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r 48 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDI 48 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 4677777777899999777788888776653
No 199
>PRK07904 short chain dehydrogenase; Provisional
Probab=30.60 E-value=3.2e+02 Score=26.63 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=23.5
Q ss_pred CceEEEEeCCchHHHHHHHHHHhc-CCCEEEEc
Q 009957 219 PVVGVGCASTGDTSAALSAYCASA-GIPSIVFL 250 (521)
Q Consensus 219 ~~~~Vv~aSSGN~g~AlAa~aa~~-Gi~~~V~v 250 (521)
+...++++.||-.|.++|....+. |.+++++.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~ 40 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAA 40 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEe
Confidence 345678888888899999765555 58877764
No 200
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.46 E-value=2.6e+02 Score=26.66 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=24.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+|+..+|..|.+++......|.+++++.
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~ 38 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLA 38 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence 467788888999999987778898776654
No 201
>PRK07791 short chain dehydrogenase; Provisional
Probab=30.45 E-value=2.7e+02 Score=27.74 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=42.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCc-----CCHHh----HHhHHhCCCEEEEECC---CHHHHHHHHHHHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANK-----ISIAQ----LVQPIANGAFVLSIDT---DFDGCMKLIREVT 288 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~-----~s~~k----~~q~~~~GA~Vi~v~g---~~dd~~~~~~~~~ 288 (521)
..+|+..++.-|.++|....+.|.+++++.-... .+..+ ...+...|.++..+.. +.+++.+.++++.
T Consensus 8 ~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 87 (286)
T PRK07791 8 VVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAAV 87 (286)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 5678777788899999888889988777632110 00111 1224445666554443 4555666666665
Q ss_pred hcC
Q 009957 289 SEL 291 (521)
Q Consensus 289 ~~~ 291 (521)
++.
T Consensus 88 ~~~ 90 (286)
T PRK07791 88 ETF 90 (286)
T ss_pred Hhc
Confidence 554
No 202
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=30.16 E-value=2.5e+02 Score=27.12 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=25.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEcc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 251 (521)
..+|+..+|.-|.+++..-.+.|.+++++..
T Consensus 8 ~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 8 VALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 5688888899999999888888998776643
No 203
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=29.96 E-value=1.7e+02 Score=28.69 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=36.7
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEEC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID 274 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~ 274 (521)
..||..|+++.-.....+....+.+++|+..+. ..++..++..|++++.++
T Consensus 75 ~rVIlD~~~rlp~~~~v~~~~~~~p~~v~~~~~---~~~~~~~~~~g~~~i~~~ 125 (218)
T COG1985 75 VRVILDSRLRLPLDSRVFRTGEGAPTIVVTTEP---EEKLRELKEAGVEVILLP 125 (218)
T ss_pred EEEEECCCCcCCchhhhhccCCCCcEEEEecCc---hhhhhHHHhCCCEEEEcC
Confidence 457778989987555555544445666666653 567788889999999887
No 204
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=29.86 E-value=31 Score=22.18 Aligned_cols=20 Identities=10% Similarity=-0.082 Sum_probs=14.6
Q ss_pred CCCCCCCccCCCCceeecC-CCC
Q 009957 84 AGPDSPEFYSLDEIVYRSR-SGG 105 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~~c~-cGG 105 (521)
.|+.|+.+++. ..-.|+ ||=
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~ 22 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGY 22 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCC
Confidence 58999999984 344586 774
No 205
>PRK06924 short chain dehydrogenase; Provisional
Probab=29.85 E-value=2.3e+02 Score=27.13 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=24.1
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+++..+|.-|.+++-.-.+.|.+++++.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~ 32 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISIS 32 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEe
Confidence 357778889999999977777899877664
No 206
>PRK06181 short chain dehydrogenase; Provisional
Probab=29.68 E-value=2.3e+02 Score=27.50 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=40.2
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
..+|+..+|..|.+++......|.+++++.............+...|.++..+..| .+...+...+..++
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35777888899999998878889887776533210111112234456666545443 34444555554443
No 207
>PRK07326 short chain dehydrogenase; Provisional
Probab=29.41 E-value=2.3e+02 Score=26.81 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=24.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..++++.+|..|.+++.+....|.+++++.
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~ 37 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITA 37 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEee
Confidence 567788889999999987777899877764
No 208
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=29.25 E-value=5.1e+02 Score=25.71 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=33.3
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEE
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVL 271 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi 271 (521)
...++...+|..|.++...++..|.+++++.. ++.+...+..+|++.+
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~----~~~~~~~~~~~g~~~~ 189 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTS----SEEKVDFCKKLAAIIL 189 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHcCCcEE
Confidence 34555566789999999999999998766433 2345555667887533
No 209
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=29.23 E-value=5.9e+02 Score=26.07 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHHHhcCC-CEEEEccCCcCCHHhHHhH--Hh------CCCEEEEECCCHHHHHHHHHHHHhcCCcc--c
Q 009957 227 STGDTSAALSAYCASAGI-PSIVFLPANKISIAQLVQP--IA------NGAFVLSIDTDFDGCMKLIREVTSELPIY--L 295 (521)
Q Consensus 227 SSGN~g~AlAa~aa~~Gi-~~~V~vP~~~~s~~k~~q~--~~------~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~--~ 295 (521)
-+|+.|..+|+.++..|+ + ++++... ....+-..+ .. .... +...++++++ ++-.+. .
T Consensus 8 GaG~vG~~iA~~la~~g~~~-VvlvDi~-~~l~~g~a~d~~~~~~~~~~~~~-i~~t~d~~~~--------~~aDiVIit 76 (305)
T TIGR01763 8 GAGFVGATTAFRLAEKELAD-LVLLDVV-EGIPQGKALDMYEASPVGGFDTK-VTGTNNYADT--------ANSDIVVIT 76 (305)
T ss_pred CcCHHHHHHHHHHHHcCCCe-EEEEeCC-CChhHHHHHhhhhhhhccCCCcE-EEecCCHHHh--------CCCCEEEEc
Confidence 359999999998888877 6 4444332 121121111 11 1122 3345666542 222222 2
Q ss_pred cC-CCCh--Hh---HhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEec
Q 009957 296 AN-SLNS--LR---LEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQ 362 (521)
Q Consensus 296 ~n-s~Np--~~---i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq 362 (521)
+. +.++ -| +.....+..++.+++....|+.+++=+.|=..+...+ ..+..|+ |..|++|.-
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~----~~~~sg~--~~~rviG~g 143 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYV----AWQKSGF--PKERVIGQA 143 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHH----HHHHHCc--CHHHEEEec
Confidence 22 1222 12 2344567888888876556888888887877766655 3456687 566899874
No 210
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.07 E-value=2.1e+02 Score=23.84 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=30.0
Q ss_pred HHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHH
Q 009957 313 EILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYY 373 (521)
Q Consensus 313 EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~ 373 (521)
.|-.++. ..|.||++++.-+-- ..+..=+.+++.|. .++-+...+...+.+.+
T Consensus 41 ~l~~~i~--~aD~VIv~t~~vsH~-~~~~vk~~akk~~i-----p~~~~~~~~~~~l~~~l 93 (97)
T PF10087_consen 41 RLPSKIK--KADLVIVFTDYVSHN-AMWKVKKAAKKYGI-----PIIYSRSRGVSSLERAL 93 (97)
T ss_pred HHHHhcC--CCCEEEEEeCCcChH-HHHHHHHHHHHcCC-----cEEEECCCCHHHHHHHH
Confidence 3445555 689999998754443 23333335677664 45555545544554444
No 211
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=29.05 E-value=7e+02 Score=27.00 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=76.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhcCCCceEEEEeCCchH--HH--HHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCC
Q 009957 192 ISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDT--SA--ALSAYCASAGIPSIVFLPANKISIAQLVQPIANG 267 (521)
Q Consensus 192 ~nPTGSfKDRga~~~v~~a~~~~~~g~~~~~Vv~aSSGN~--g~--AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~G 267 (521)
.+|||-=|.-..+-+...+.. ..+++...++ |+-|. |+ .|-.||...|+++.++.+.... ...+.++. .
T Consensus 209 VGPTGVGKTTTlAKLAar~~~--~~~~~kVaiI--TtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el-~~ai~~l~--~ 281 (407)
T COG1419 209 VGPTGVGKTTTLAKLAARYVM--LKKKKKVAII--TTDTYRIGAVEQLKTYADIMGVPLEVVYSPKEL-AEAIEALR--D 281 (407)
T ss_pred ECCCCCcHHHHHHHHHHHHHh--hccCcceEEE--EeccchhhHHHHHHHHHHHhCCceEEecCHHHH-HHHHHHhh--c
Confidence 389999999888766555431 2222223343 55555 54 4569999999999998865321 11223333 4
Q ss_pred CEEEEECC---CHHHHH--HHHHHHHhcCCccccCCCChHh---HhhHHHHHHHHHHhcCCCCCcEEEEc----CCchhH
Q 009957 268 AFVLSIDT---DFDGCM--KLIREVTSELPIYLANSLNSLR---LEGQKTAAVEILQQFDWEVPDWVIVP----GGNLGN 335 (521)
Q Consensus 268 A~Vi~v~g---~~dd~~--~~~~~~~~~~~~~~~ns~Np~~---i~G~~T~a~EI~eQl~~~~pD~VvVP----~G~Gg~ 335 (521)
-++|.||. ++-|.+ +..+++.... ++.+-+. .-.+..-..||++|+..-.++.+++- +.+-|+
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~-----~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~ 356 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVS-----HSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGN 356 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhcc-----ccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchhH
Confidence 48999983 222221 2223332211 1111111 11233457889999875456777776 666777
Q ss_pred HHHHH
Q 009957 336 IYAFY 340 (521)
Q Consensus 336 l~G~~ 340 (521)
+..+.
T Consensus 357 ~~s~~ 361 (407)
T COG1419 357 LFSLM 361 (407)
T ss_pred HHHHH
Confidence 66655
No 212
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=29.01 E-value=15 Score=34.84 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=24.2
Q ss_pred ccceeecCCCCCCCCCCccCCCCce---eecC-CCCcce
Q 009957 74 TFSAKYVPFNAGPDSPEFYSLDEIV---YRSR-SGGLLD 108 (521)
Q Consensus 74 ~~~~~~v~~~~~~~cg~~~~~~~~~---~~c~-cGGll~ 108 (521)
+-.+-|+ |+.|...|+|+++. ++|+ ||+.|+
T Consensus 109 ~~~~~y~----C~~~~~r~sfdeA~~~~F~Cp~Cg~~L~ 143 (176)
T COG1675 109 TENNYYV----CPNCHVKYSFDEAMELGFTCPKCGEDLE 143 (176)
T ss_pred ccCCcee----CCCCCCcccHHHHHHhCCCCCCCCchhh
Confidence 3345677 89999999998776 4595 999885
No 213
>PRK08226 short chain dehydrogenase; Provisional
Probab=28.90 E-value=2.8e+02 Score=26.85 Aligned_cols=68 Identities=9% Similarity=0.018 Sum_probs=39.7
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
+.+|+..+|.-|.+++......|.+++++--... .......+...|.++..+..| .++..+...++.+
T Consensus 8 ~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 8 TALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKE 78 (263)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 5688888899999999877888998766643221 111222334446565444443 3344444554443
No 214
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=28.69 E-value=3.8e+02 Score=25.40 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=53.1
Q ss_pred HHhCCCEEEEEC--CCHHHHHHHHHHHHhcC-----Cc--c--ccCC-CC--hHhHhhHHHHHHHHHHhcCCCCCcEEEE
Q 009957 263 PIANGAFVLSID--TDFDGCMKLIREVTSEL-----PI--Y--LANS-LN--SLRLEGQKTAAVEILQQFDWEVPDWVIV 328 (521)
Q Consensus 263 ~~~~GA~Vi~v~--g~~dd~~~~~~~~~~~~-----~~--~--~~ns-~N--p~~i~G~~T~a~EI~eQl~~~~pD~VvV 328 (521)
....|.+|+.++ |+.-|+|..+.++..+. ++ . ..|+ .. ..+=-|+.++.-.=+|.++ .|--|++
T Consensus 37 ~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g--~~GDvLi 114 (176)
T COG0279 37 SLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALG--QPGDVLI 114 (176)
T ss_pred HHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcC--CCCCEEE
Confidence 345799999886 67889999988875442 11 1 1121 10 0111234444433334455 4444555
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCC
Q 009957 329 PGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAAN 365 (521)
Q Consensus 329 P~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~ 365 (521)
...+-|+---+.++++.++++|+ .+|+-.-.+
T Consensus 115 gISTSGNS~nVl~Ai~~Ak~~gm-----~vI~ltG~~ 146 (176)
T COG0279 115 GISTSGNSKNVLKAIEAAKEKGM-----TVIALTGKD 146 (176)
T ss_pred EEeCCCCCHHHHHHHHHHHHcCC-----EEEEEecCC
Confidence 54444455555677778999886 567765433
No 215
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=28.62 E-value=2.8e+02 Score=26.83 Aligned_cols=69 Identities=12% Similarity=0.021 Sum_probs=39.6
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh-HHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ-LVQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
...+|+..+|.-|.+++......|.+++++..... ...+ ..++...|.++..+..| .++..+.++++.+
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINAD-AANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 35677788888899999888888998777654321 1111 12234456555444333 3344444444443
No 216
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=28.58 E-value=2.6e+02 Score=26.73 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=41.8
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcC-CHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SIAQLVQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~-s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
..+|+..||.-|.++|-.....|.+++++.-.+.. ....+..+...|.+++.+..| .++..+.++++.+
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKA 77 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46788888999999998888889887665432211 111223344567777655544 3444455555443
No 217
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=28.45 E-value=5.4e+02 Score=24.84 Aligned_cols=42 Identities=10% Similarity=0.117 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHH-HHHHHcCC
Q 009957 309 TAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGF-KMCHELGL 351 (521)
Q Consensus 309 T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf-~~l~~~Gl 351 (521)
.+..+++++.+...+.++|+|+.++..-.. ..-+ ..+.++|.
T Consensus 16 ~i~~~~~~~ag~~~~~i~~iptA~~~~~~~-~~~~~~~~~~lG~ 58 (217)
T cd03145 16 AILQRFVARAGGAGARIVVIPAASEEPAEV-GEEYRDVFERLGA 58 (217)
T ss_pred HHHHHHHHHcCCCCCcEEEEeCCCcChhHH-HHHHHHHHHHcCC
Confidence 455666777765578999999987653222 2222 23456675
No 218
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=28.09 E-value=2.7e+02 Score=27.68 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=19.4
Q ss_pred EccCCcCCHHhHHhHHhCCCEEEEECCCH
Q 009957 249 FLPANKISIAQLVQPIANGAFVLSIDTDF 277 (521)
Q Consensus 249 ~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~ 277 (521)
+=|+...+...+..+...|...+.|+|+.
T Consensus 14 iDP~k~~~~~~~~~~~~~gtdai~vGGS~ 42 (232)
T PRK04169 14 LDPDKPLPDEALEAICESGTDAIIVGGSD 42 (232)
T ss_pred ECCCCCCCHHHHHHHHhcCCCEEEEcCCC
Confidence 33765444444455667788889999875
No 219
>PRK05650 short chain dehydrogenase; Provisional
Probab=27.96 E-value=2.5e+02 Score=27.50 Aligned_cols=68 Identities=10% Similarity=-0.033 Sum_probs=39.5
Q ss_pred EEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 222 GVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 222 ~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
.++++.+|.-|.+++..-...|.+++++.-...........+...|.++..+..| .++..+.+.++.+
T Consensus 3 vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5777888999999998778889987776533210011122244556566555443 3444455554443
No 220
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=27.74 E-value=5.9e+02 Score=24.97 Aligned_cols=82 Identities=16% Similarity=0.019 Sum_probs=52.1
Q ss_pred HHhcCCCceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCC-cCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcC
Q 009957 213 LRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPAN-KISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSEL 291 (521)
Q Consensus 213 ~~~~g~~~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~-~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~ 291 (521)
+.+-|-+. .=++.+|=...-++...++..+ +++ +-.+ -.++.|..+....||+.+.-+|--.+.. +.+.++
T Consensus 34 li~gGi~~-IEITl~sp~a~e~I~~l~~~~p-~~l--IGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~----~~a~~~ 105 (211)
T COG0800 34 LIEGGIPA-IEITLRTPAALEAIRALAKEFP-EAL--IGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVA----KAANRY 105 (211)
T ss_pred HHHcCCCe-EEEecCCCCHHHHHHHHHHhCc-ccE--EccccccCHHHHHHHHHcCCCEEECCCCCHHHH----HHHHhC
Confidence 34445432 3355677777888998888888 544 4443 3578899999999999987776444333 344555
Q ss_pred CccccCC-CChH
Q 009957 292 PIYLANS-LNSL 302 (521)
Q Consensus 292 ~~~~~ns-~Np~ 302 (521)
+.-++.. .+|-
T Consensus 106 ~ip~~PG~~Tpt 117 (211)
T COG0800 106 GIPYIPGVATPT 117 (211)
T ss_pred CCcccCCCCCHH
Confidence 6544443 3443
No 221
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=27.66 E-value=33 Score=30.29 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=33.4
Q ss_pred HHHhcCCCCCCccceeecCC-CCCCCCCCccCCCCceeecC-CCCcc
Q 009957 63 EARRQRSTTNNTFSAKYVPF-NAGPDSPEFYSLDEIVYRSR-SGGLL 107 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~~v~~-~~~~~cg~~~~~~~~~~~c~-cGGll 107 (521)
..++......-.|.+.++|. ..|..|+..+..++..+.|+ ||+.-
T Consensus 50 v~~egT~aega~l~Ie~~p~~~~C~~C~~~~~~e~~~~~CP~C~s~~ 96 (115)
T COG0375 50 VVAEGTIAEGAELHIEEEPAECWCLDCGQEVELEELDYRCPKCGSIN 96 (115)
T ss_pred HHhccCcccCCEEEEEEeccEEEeccCCCeecchhheeECCCCCCCc
Confidence 34444445666677888764 47999999999998888896 99753
No 222
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.58 E-value=3.8e+02 Score=27.02 Aligned_cols=68 Identities=19% Similarity=0.138 Sum_probs=41.9
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh-HHhHHhCCCEEEEECCCH---HHHHHHHHHH
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ-LVQPIANGAFVLSIDTDF---DGCMKLIREV 287 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~~---dd~~~~~~~~ 287 (521)
...+|+..+|.-|.++|..-.+.|.++++..-.......+ ...++..|.+++.+..|. +++.+.+++.
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~ 84 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATA 84 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3578888888889999977788898877654322111111 233556787877676553 3444444443
No 223
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.57 E-value=3.3e+02 Score=26.29 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=40.1
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHH-hHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLV-QPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~-q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
.+.+|+..+|.-|.+++..-...|.+++++.-.. ...+.. .+...|.++..+..| .++..+.++++.+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT--NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567888888889999977778899887765432 222222 233455555444433 33344444444433
No 224
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.51 E-value=1.8e+02 Score=27.47 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=34.8
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh-HHhHHhCCCEEEEECCCH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ-LVQPIANGAFVLSIDTDF 277 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~~GA~Vi~v~g~~ 277 (521)
+.+++..+|..|..++......|.+++++.-.. ....+ ...+...|.++..+..|.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~ 63 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNE-EAAEALAAELRAAGGEARVLVFDV 63 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh-hHHHHHHHHHHhcCCceEEEEccC
Confidence 567888889999999977777899865554321 11111 222445676666655544
No 225
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=27.46 E-value=2.8e+02 Score=26.69 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=37.6
Q ss_pred EEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhH-HhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 222 GVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQP-IANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 222 ~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~-~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
.+++..||..|.+++-.....|.+++++. .+ +.++..+ ...|.++..+.+| .++..+...++.+
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~-r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATG-RR---QERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEE-CC---HHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHH
Confidence 57778889999999988888898876653 22 2233332 2235455444443 3444444444433
No 226
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=27.33 E-value=2.9e+02 Score=26.82 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=38.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHH-hCCCEE--EEEC-CCHHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPI-ANGAFV--LSID-TDFDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~-~~GA~V--i~v~-g~~dd~~~~~~~~~~~ 290 (521)
..+|+..+|.-|.+++......|.+++++. .+ ..+...+. .++.++ +.+| .+.+++.+.++++.++
T Consensus 8 ~vlVtGas~gIG~~ia~~l~~~G~~V~~~~-r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 8 VALITGGGSGIGRALVERFLAEGARVAVLE-RS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEe-CC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 567888888889999988888899876653 22 22333332 234333 3333 2344455555555443
No 227
>PRK08265 short chain dehydrogenase; Provisional
Probab=27.19 E-value=3.2e+02 Score=26.58 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=39.1
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhH-HhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQP-IANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~-~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
..+|+..+|--|.+++....+.|.+++++- .+ ..+...+ ...|.++..+..| .++..+.++++.++
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~-r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAIVD-ID---ADNGAAVAASLGERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEe-CC---HHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 568888888889999988888899776653 22 2222222 2335555444433 44445555555443
No 228
>PRK06849 hypothetical protein; Provisional
Probab=27.11 E-value=7.5e+02 Score=25.93 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=20.1
Q ss_pred CChHhHhhHHHHHHHHHHhcCCCCCcEEEE
Q 009957 299 LNSLRLEGQKTAAVEILQQFDWEVPDWVIV 328 (521)
Q Consensus 299 ~Np~~i~G~~T~a~EI~eQl~~~~pD~VvV 328 (521)
.+......-|...+|+++++|-..|....+
T Consensus 108 ~~~~~~~~DK~~~~~~~~~~GipvP~t~~v 137 (389)
T PRK06849 108 FELLLLLHNKWEFAEQARSLGLSVPKTYLI 137 (389)
T ss_pred HHHHHHhhCHHHHHHHHHHcCCCCCCEEEe
Confidence 344556677778888888887555665544
No 229
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=27.09 E-value=3.6e+02 Score=23.71 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEE-EECCCHHHHHHHHHHHHhcCC---ccccCCCChHhHhhHHHH
Q 009957 235 LSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVL-SIDTDFDGCMKLIREVTSELP---IYLANSLNSLRLEGQKTA 310 (521)
Q Consensus 235 lAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi-~v~g~~dd~~~~~~~~~~~~~---~~~~ns~Np~~i~G~~T~ 310 (521)
|+...+..+.+++|++-...............+..++ ..++++.+++..+-+.+ ..+ ...+.+.-|..-.-.-.-
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g~dLG~Rm~~a~~~~-~~g~~~vvliGsD~P~l~~~~l~~ 80 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQGGDLGERMANAFQQA-ARGYEPVVLIGSDCPDLTPDDLEQ 80 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--SSSHHHHHHHHHHHH-HTT-SEEEEE-SS-TT--HHHHHH
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCCCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCCCCHHHHHH
Confidence 4556677888888888443223222222445666664 45678999887766655 322 233444434322222223
Q ss_pred HHHHHHhcCCCCCcEEEEcCCchh
Q 009957 311 AVEILQQFDWEVPDWVIVPGGNLG 334 (521)
Q Consensus 311 a~EI~eQl~~~~pD~VvVP~G~Gg 334 (521)
+ ++.+. ..|.|+.|+.-||
T Consensus 81 A---~~~L~--~~d~VlgPa~DGG 99 (122)
T PF09837_consen 81 A---FEALQ--RHDVVLGPAEDGG 99 (122)
T ss_dssp H---HHHTT--T-SEEEEEBTTSS
T ss_pred H---HHHhc--cCCEEEeeccCCC
Confidence 3 44454 4589999998765
No 230
>PRK06114 short chain dehydrogenase; Provisional
Probab=27.06 E-value=4e+02 Score=25.72 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=34.2
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCC-HHhHHhHHhCCCEEEEECC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS-IAQLVQPIANGAFVLSIDT 275 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s-~~k~~q~~~~GA~Vi~v~g 275 (521)
..+|+..+|.-|.++|..-...|.++++........ ..-..++...|.++..+..
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAA 65 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEc
Confidence 567888888889999987788899888776432101 1112334455655544443
No 231
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.97 E-value=3.1e+02 Score=28.69 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=39.1
Q ss_pred CeEEEeCHHHHHHHHH-HHH---hcC---Ceeccc---hHHHHH-HHHHHHhcCCCCCCCeEEEEeCCCCCCchHHH
Q 009957 413 GIVEEATEEELMDAMA-QAD---STG---MFICPH---TGVALT-ALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSK 478 (521)
Q Consensus 413 g~~v~Vsd~Ei~~A~~-~l~---~eG---i~~ePs---sA~alA-a~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~ 478 (521)
..++.|+.++-..-.+ +|. ... +++||. ||.|+| |++...++. .+..++++-++|-.++.+..
T Consensus 51 ~~~~vVtne~~~f~v~eql~e~~~~~~~~illEP~gRnTApAIA~aa~~~~~~~---~d~~~lVlpsDH~I~d~~af 124 (333)
T COG0836 51 EEPLVVTNEKYRFIVKEQLPEIDIENAAGIILEPEGRNTAPAIALAALSATAEG---GDALVLVLPSDHVIADEEAF 124 (333)
T ss_pred cCeEEEeCHHHHHHHHHHHhhhhhccccceEeccCCCCcHHHHHHHHHHHHHhC---CCcEEEEecCcceeccHHHH
Confidence 3566777777665555 463 233 999994 555555 233333331 35678888999988876543
No 232
>PRK06949 short chain dehydrogenase; Provisional
Probab=26.87 E-value=2.6e+02 Score=26.94 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=25.5
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEcc
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 251 (521)
.+.+++..+|.-|.+++....+.|.+++++.-
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r 41 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASR 41 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 35688888899999999888888998666543
No 233
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=26.83 E-value=3.7e+02 Score=25.59 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=40.1
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCC-HHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS-IAQLVQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s-~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
..+|+..+|--|.++|......|..+++........ ......+...|.++..+..| .+...+.++++.+
T Consensus 8 ~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 8 VAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567778888889999987778898877654332101 11112344567777666544 3334444444433
No 234
>PRK07832 short chain dehydrogenase; Provisional
Probab=26.79 E-value=2.2e+02 Score=27.95 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=23.6
Q ss_pred EEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 222 GVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 222 ~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
.+|+..+|..|.+++...++.|.+++++.
T Consensus 3 vlItGas~giG~~la~~la~~G~~vv~~~ 31 (272)
T PRK07832 3 CFVTGAASGIGRATALRLAAQGAELFLTD 31 (272)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 57778888889999988888998876654
No 235
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=26.55 E-value=5.3e+02 Score=24.04 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=21.8
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEE
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVF 249 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 249 (521)
.+.++...+|..|.+++......|.+++++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~ 58 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLV 58 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 355666667999988887777778666555
No 236
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.48 E-value=38 Score=30.19 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=20.8
Q ss_pred CCCccceeecCC-CCCCCCCCccCCCCc-------eeecC-CCCc
Q 009957 71 TNNTFSAKYVPF-NAGPDSPEFYSLDEI-------VYRSR-SGGL 106 (521)
Q Consensus 71 ~~~~~~~~~v~~-~~~~~cg~~~~~~~~-------~~~c~-cGGl 106 (521)
....+....+|- ..| .||.+++.++. .+.|+ ||+.
T Consensus 58 egA~L~I~~vp~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~ 101 (124)
T PRK00762 58 EDADLIVEMIPVEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNK 101 (124)
T ss_pred CCCEEEEEecCeeEEe-eCcCcccccccchhccccCCcCcCCCCC
Confidence 444444444442 359 99999876521 15695 8864
No 237
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=26.32 E-value=1.5e+02 Score=31.42 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=48.3
Q ss_pred HHhCC-CEEEEECCCHH---HHHHHHHHHHhcCCccccC-CCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHH
Q 009957 263 PIANG-AFVLSIDTDFD---GCMKLIREVTSELPIYLAN-SLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIY 337 (521)
Q Consensus 263 ~~~~G-A~Vi~v~g~~d---d~~~~~~~~~~~~~~~~~n-s~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~ 337 (521)
+..+| .++..|+.||- ++.+.++++.++.|.-.+. .+-|+.-.-...+.-+|.+. .|| ||+.+-.|....
T Consensus 129 ~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~~----~Pd-~V~stlvG~s~~ 203 (363)
T PF13433_consen 129 LENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKAA----KPD-FVFSTLVGDSNV 203 (363)
T ss_dssp HHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHHH----T-S-EEEEE--TTCHH
T ss_pred HhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHhh----CCC-EEEEeCcCCcHH
Confidence 45689 99999998864 5778888888877653332 23444333334455555443 688 667777788888
Q ss_pred HHHHHHHHHHHcCC
Q 009957 338 AFYKGFKMCHELGL 351 (521)
Q Consensus 338 G~~kgf~~l~~~Gl 351 (521)
++++.++ +.|+
T Consensus 204 aF~r~~~---~aG~ 214 (363)
T PF13433_consen 204 AFYRAYA---AAGL 214 (363)
T ss_dssp HHHHHHH---HHH-
T ss_pred HHHHHHH---HcCC
Confidence 9998655 5576
No 238
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=26.25 E-value=3e+02 Score=26.15 Aligned_cols=69 Identities=14% Similarity=0.043 Sum_probs=40.2
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCH---HHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDF---DGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~---dd~~~~~~~~~~ 289 (521)
+.+++..+|.-|.+++..-...|.+++++.-...........+...|.++..+.+|. ++..+..+++.+
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567888889999999987778898776654321001112223445566665555543 334444444433
No 239
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=26.15 E-value=3e+02 Score=26.52 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=39.4
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC---CHHHHHHHHHHHHhc
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT---DFDGCMKLIREVTSE 290 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g---~~dd~~~~~~~~~~~ 290 (521)
.+.+|+..+|..|.+++....+.|.+++++.-.......-...+...|.++..+.. +.++..+.++++.++
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 35678888888899999777778988776643321000111223345654544443 344445555554443
No 240
>PRK12744 short chain dehydrogenase; Provisional
Probab=26.13 E-value=4.2e+02 Score=25.59 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=40.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhH----HhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQL----VQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~----~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
..+++..+|.-|.++|..-...|.+++++.-....+..+. ..+...|.++..+..| .++..+.+.++.+
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 5677788888899999877888999776653211112222 2234456666555544 3444555555443
No 241
>PRK12937 short chain dehydrogenase; Provisional
Probab=26.09 E-value=3.7e+02 Score=25.50 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=35.2
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCH--HhHHhHHhCCCEEEEECCC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISI--AQLVQPIANGAFVLSIDTD 276 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~--~k~~q~~~~GA~Vi~v~g~ 276 (521)
..+++..+|.-|.++|-.-.+.|.+++++.-.+ .+. .....+...|.++..+..|
T Consensus 7 ~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 7 VAIVTGASRGIGAAIARRLAADGFAVAVNYAGS-AAAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEecCCC-HHHHHHHHHHHHhcCCeEEEEECC
Confidence 567888889999999988888899877665332 111 1112244557666555544
No 242
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=26.01 E-value=31 Score=24.30 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=14.7
Q ss_pred CCCCCCCc---cCCCCc-eeec-CCCCcce
Q 009957 84 AGPDSPEF---YSLDEI-VYRS-RSGGLLD 108 (521)
Q Consensus 84 ~~~~cg~~---~~~~~~-~~~c-~cGGll~ 108 (521)
.|+.|+.. +.+.++ +..| .|||++.
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G~W~ 30 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGGIWF 30 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCeEEc
Confidence 36777753 233332 3359 5999985
No 243
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=25.93 E-value=22 Score=35.38 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=24.0
Q ss_pred EEEEeCCchH--HHHHHHHHHhcCCCEEEEccCC
Q 009957 222 GVGCASTGDT--SAALSAYCASAGIPSIVFLPAN 253 (521)
Q Consensus 222 ~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~~ 253 (521)
.|+..||... +..+..++...|.+++++=+..
T Consensus 182 ~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~ 215 (244)
T PRK14138 182 MIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGE 215 (244)
T ss_pred EEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCC
Confidence 4666777765 6777778888899988887753
No 244
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=25.82 E-value=1.5e+02 Score=28.58 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=17.1
Q ss_pred CCchHHHHHHHHHHhcCCCEEEEccC
Q 009957 227 STGDTSAALSAYCASAGIPSIVFLPA 252 (521)
Q Consensus 227 SSGN~g~AlAa~aa~~Gi~~~V~vP~ 252 (521)
+|+.-|.++|..-.+.|.++++..-.
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~ 29 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRN 29 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCC
Confidence 45666777777767777776665544
No 245
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.61 E-value=3.2e+02 Score=26.01 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=24.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+|+..+|..|.+++......|.+++++.
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 568888889999999988788899866554
No 246
>PRK09291 short chain dehydrogenase; Provisional
Probab=25.56 E-value=1.3e+02 Score=28.96 Aligned_cols=58 Identities=10% Similarity=0.014 Sum_probs=35.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHH-hHHhCCCEEEEECCCHHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLV-QPIANGAFVLSIDTDFDG 279 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~-q~~~~GA~Vi~v~g~~dd 279 (521)
..+|+..||..|.+++......|.+++++.-.. ....++. .....|..+..+.+|..+
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~ 62 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIA-PQVTALRAEAARRGLALRVEKLDLTD 62 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCcceEEEeeCCC
Confidence 467888889999999988888898887765432 1111111 123345555555555444
No 247
>PRK05717 oxidoreductase; Validated
Probab=25.55 E-value=3.3e+02 Score=26.30 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=24.8
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+|+..+|.-|.++|..-...|.+++++.
T Consensus 12 ~vlItG~sg~IG~~~a~~l~~~g~~v~~~~ 41 (255)
T PRK05717 12 VALVTGAARGIGLGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCEEEEEc
Confidence 578888889999999988888898877763
No 248
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.51 E-value=2.2e+02 Score=26.91 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=40.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHH-hHHhCCCEEEEECCCHH---HHHHHHHHHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLV-QPIANGAFVLSIDTDFD---GCMKLIREVT 288 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~-q~~~~GA~Vi~v~g~~d---d~~~~~~~~~ 288 (521)
+.+|+..||..|.+++......|.+++++...+.....+.. .+...+.++..+..|.. +..+...++.
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 79 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAV 79 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHH
Confidence 56788888999999998888889988776655421111121 23344555555555443 3344444443
No 249
>PRK09242 tropinone reductase; Provisional
Probab=25.45 E-value=3.3e+02 Score=26.28 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=38.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhH-HhHHhC--CCEEEEECCCH---HHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQL-VQPIAN--GAFVLSIDTDF---DGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~-~q~~~~--GA~Vi~v~g~~---dd~~~~~~~~~~ 289 (521)
..+++..+|.-|.+++......|.+++++.-.. ....+. ..+... +.++..+..|. ++..+.+.++.+
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGADVLIVARDA-DALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH-HHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567778888899999988888898876664321 111111 122222 56666665543 334444444443
No 250
>PRK07206 hypothetical protein; Provisional
Probab=25.42 E-value=7.7e+02 Score=25.99 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=31.2
Q ss_pred HHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCCCCCcE
Q 009957 263 PIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDW 325 (521)
Q Consensus 263 ~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pD~ 325 (521)
++.++...+.. ++ |.....+.++++..++...++..-....-.|....+.+++.+-..|.+
T Consensus 66 ~~~~~~d~vi~-~~-e~~~~~~a~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~ 126 (416)
T PRK07206 66 LRKLGPEAIIA-GA-ESGVELADRLAEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQ 126 (416)
T ss_pred HHHcCCCEEEE-CC-CccHHHHHHHHHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccE
Confidence 44566666544 32 444555666666655433343322333346666777777665333333
No 251
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=25.41 E-value=1.9e+02 Score=28.00 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=34.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHH----hHHhCCCEEEEECCCHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLV----QPIANGAFVLSIDTDFD 278 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~----q~~~~GA~Vi~v~g~~d 278 (521)
+.+|+..+|.-|.++|..-...|.+++++. .+ ..++. .+...|.++..+.+|..
T Consensus 14 ~ilItGa~g~IG~~la~~l~~~G~~V~~~~-r~---~~~~~~~~~~i~~~~~~~~~~~~Dl~ 71 (259)
T PRK08213 14 TALVTGGSRGLGLQIAEALGEAGARVVLSA-RK---AEELEEAAAHLEALGIDALWIAADVA 71 (259)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEe-CC---HHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 567888888889999977777898765543 32 12222 23455667666665543
No 252
>PRK05854 short chain dehydrogenase; Provisional
Probab=25.40 E-value=3e+02 Score=27.91 Aligned_cols=70 Identities=14% Similarity=0.093 Sum_probs=40.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh-HHhHHh--CCCEE--EEEC-CCHHHHHHHHHHHHhcC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ-LVQPIA--NGAFV--LSID-TDFDGCMKLIREVTSEL 291 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k-~~q~~~--~GA~V--i~v~-g~~dd~~~~~~~~~~~~ 291 (521)
..||+..+|--|.++|..-.+.|.++++..-.. ....+ +..+.. -+.++ +.+| .+.++..+.++++.++.
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~-~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRNR-AKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 567887778889999987788898776654221 11111 112222 13444 4444 45666777777765543
No 253
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=25.29 E-value=3.2e+02 Score=26.01 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=39.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhH-HhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQL-VQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~-~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
..+++..+|.-|.+++..-.+.|.+++++.-.. ....++ ..+...+.++..+..| .++..+..+++.+
T Consensus 5 ~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 76 (250)
T TIGR03206 5 TAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR-EAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQ 76 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567888889999999988888898877664322 111111 1133445555444443 3444455554433
No 254
>PRK07806 short chain dehydrogenase; Provisional
Probab=25.27 E-value=4.4e+02 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=24.8
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+|+..+|--|.+++......|.+++++.
T Consensus 8 ~vlItGasggiG~~l~~~l~~~G~~V~~~~ 37 (248)
T PRK07806 8 TALVTGSSRGIGADTAKILAGAGAHVVVNY 37 (248)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 567888889999999988888899887764
No 255
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=25.18 E-value=3.6e+02 Score=26.96 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHH-HHHHcCCCCCCCeEEEe
Q 009957 308 KTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFK-MCHELGLVDRMPRLVCT 361 (521)
Q Consensus 308 ~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~-~l~~~Gl~~~~prli~V 361 (521)
..+..+++++.+...+..+|+|+.++.-- ....-+. .++++|. ....++-+
T Consensus 14 ~~i~~~~~~lag~~~~rI~~iptAS~~~~-~~~~~~~~~~~~lG~--~~v~~l~i 65 (250)
T TIGR02069 14 REILREFVSRAGGEDAIIVIITSASEEPR-EVGERYITIFSRLGV--KEVKILDV 65 (250)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCCCChH-HHHHHHHHHHHHcCC--ceeEEEec
Confidence 34667777888766788999998876432 2222333 4567886 23344444
No 256
>CHL00067 rps2 ribosomal protein S2
Probab=24.96 E-value=6.8e+02 Score=24.70 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=21.9
Q ss_pred hCCCEEEEECCCHHHHHHHHHHHHhcCCccccC
Q 009957 265 ANGAFVLSIDTDFDGCMKLIREVTSELPIYLAN 297 (521)
Q Consensus 265 ~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~n 297 (521)
..|.+|..|.... ...+.+++.++..+.++++
T Consensus 66 ~~~g~ILfV~t~~-~~~~~v~~~a~~~~~~yv~ 97 (230)
T CHL00067 66 SKGKKFLFVGTKK-QAADLVASAAIRARCHYVN 97 (230)
T ss_pred hCCCeEEEEeCcH-HHHHHHHHHHHHhCCcCcc
Confidence 4578888887664 4677777777776655555
No 257
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.94 E-value=41 Score=36.15 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=25.0
Q ss_pred CccceeecCCCCCCCCCCccC---------CCCceeec-CCCCccee
Q 009957 73 NTFSAKYVPFNAGPDSPEFYS---------LDEIVYRS-RSGGLLDV 109 (521)
Q Consensus 73 ~~~~~~~v~~~~~~~cg~~~~---------~~~~~~~c-~cGGll~~ 109 (521)
.+-..-|+ |+.|.++|+ +++..|.| .|||.|+-
T Consensus 123 ~t~~~~Y~----Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~gelve 165 (436)
T KOG2593|consen 123 DTNVAGYV----CPNCQKKYTSLEALQLLDNETGEFHCENCGGELVE 165 (436)
T ss_pred cccccccc----CCccccchhhhHHHHhhcccCceEEEecCCCchhc
Confidence 44566788 999999974 44567889 69999864
No 258
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=24.48 E-value=4e+02 Score=26.86 Aligned_cols=48 Identities=13% Similarity=-0.031 Sum_probs=33.3
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEE
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVL 271 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi 271 (521)
...++.+.+|-.|.++..+|+..|.++++... +..+...++.+|++.+
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~----s~~~~~~~~~lGa~~v 187 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG----SDEKVAYLKKLGFDVA 187 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHcCCCEE
Confidence 34445555688898888899999998665443 3446677778898544
No 259
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=24.46 E-value=35 Score=33.48 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=18.8
Q ss_pred CCCCCCCccCCCCce--eec-CCCCccee
Q 009957 84 AGPDSPEFYSLDEIV--YRS-RSGGLLDV 109 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~--~~c-~cGGll~~ 109 (521)
.|..|+..|+.++.. .+| .|||++.|
T Consensus 120 ~C~~C~~~~~~~~~~~~p~C~~Cgg~lrP 148 (225)
T cd01411 120 YCTVCGKTVDWEEYLKSPYHAKCGGVIRP 148 (225)
T ss_pred EeCCCCCccchhhcCCCCCCCCCCCEeCC
Confidence 688899888765443 359 49998765
No 260
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=24.40 E-value=2.2e+02 Score=29.35 Aligned_cols=49 Identities=10% Similarity=-0.051 Sum_probs=35.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEE
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVL 271 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi 271 (521)
+.+|.+ .|..|...+.+++..|.+++++.... .++.++..++.+|++.+
T Consensus 175 ~vlI~G-~G~vG~~a~q~ak~~G~~vi~~~~~~-~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 175 RALVLG-AGPIGLLAALLLRLRGFEVYVLNRRD-PPDPKADIVEELGATYV 223 (355)
T ss_pred EEEEEC-CCHHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEe
Confidence 345544 58889888889999999866665543 45667778888999853
No 261
>PRK07677 short chain dehydrogenase; Provisional
Probab=24.40 E-value=3.1e+02 Score=26.42 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=22.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEE
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVF 249 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~ 249 (521)
+.+|++.+|.-|.+++......|.+++++
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~ 31 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVIT 31 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 46777888888999997777889876555
No 262
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=24.26 E-value=2.3e+02 Score=27.12 Aligned_cols=68 Identities=10% Similarity=0.034 Sum_probs=40.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhH-HhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQL-VQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~-~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
..+|+..||..|.+++-.-...|.+++++.-.. ....+. ..+...+.++..+..| .++..+.+.++.+
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLND-EAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVE 77 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 567888889999999977677899887765432 111121 2244456666555544 3344444444433
No 263
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=24.24 E-value=8e+02 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=16.5
Q ss_pred EEEEeCCchHH--HHHHHHHHhcCCCEEEEcc
Q 009957 222 GVGCASTGDTS--AALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 222 ~Vv~aSSGN~g--~AlAa~aa~~Gi~~~V~vP 251 (521)
.|+..-|||+- ...+..++..|.+++++..
T Consensus 82 vI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~ 113 (337)
T PRK08674 82 VIAVSYSGNTEETLSAVEQALKRGAKIIAITS 113 (337)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC
Confidence 34445556663 3444556666666665553
No 264
>PRK05875 short chain dehydrogenase; Provisional
Probab=24.17 E-value=3.2e+02 Score=26.67 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=25.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+|+..+|..|.+++......|.+++++.
T Consensus 9 ~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 9 TYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 568888889999999988888899877665
No 265
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.13 E-value=4.5e+02 Score=28.12 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=42.9
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHh-HHhCCCEEEEECC-CHHHHHHHHHHHHhc
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQ-PIANGAFVLSIDT-DFDGCMKLIREVTSE 290 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q-~~~~GA~Vi~v~g-~~dd~~~~~~~~~~~ 290 (521)
...+|+..+|.-|.+++....+.|.+++++-... ...++.. ....++.++.+|- +.++..+...++.++
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~--~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA--AGEALAAVANRVGGTALALDITAPDAPARIAEHLAER 281 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc--cHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 3567888888899999988888899877764322 2223333 2345777777763 344444555544443
No 266
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=24.01 E-value=22 Score=36.81 Aligned_cols=29 Identities=34% Similarity=0.497 Sum_probs=22.2
Q ss_pred eeecCCCCCCCCCCccCCCCce---eecC-CCCc
Q 009957 77 AKYVPFNAGPDSPEFYSLDEIV---YRSR-SGGL 106 (521)
Q Consensus 77 ~~~v~~~~~~~cg~~~~~~~~~---~~c~-cGGl 106 (521)
.||- .+.|.+|.+.|+++++. |+|+ |||-
T Consensus 242 GKY~-~TAC~rC~t~y~le~A~~~~wrCpkCGg~ 274 (403)
T COG1379 242 GKYH-LTACSRCYTRYSLEEAKSLRWRCPKCGGK 274 (403)
T ss_pred cchh-HHHHHHhhhccCcchhhhhcccCcccccc
Confidence 4554 35689999999998765 6795 9994
No 267
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=23.90 E-value=8.1e+02 Score=26.43 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=30.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhcC----CCceEEEEeCCchHHHH--HHHHHHhcCCCEEEEc
Q 009957 192 ISHTGSFKDLGMTVLVSQVNRLRKMK----RPVVGVGCASTGDTSAA--LSAYCASAGIPSIVFL 250 (521)
Q Consensus 192 ~nPTGSfKDRga~~~v~~a~~~~~~g----~~~~~Vv~aSSGN~g~A--lAa~aa~~Gi~~~V~v 250 (521)
-+|.|..+.-- .+.++.++.| .+...+|+..|+..|.| +|... ..|.+++++.
T Consensus 15 ~hp~gc~~~v~-----~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 15 AHPVGCEANVK-----EQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCHHHHHHHH-----HHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 46888655433 2333332222 12356777777777777 66555 7898876664
No 268
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=23.86 E-value=34 Score=33.21 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=21.9
Q ss_pred EEEEeCCchH--HHHHHHHHHhcCCCEEEEccCC
Q 009957 222 GVGCASTGDT--SAALSAYCASAGIPSIVFLPAN 253 (521)
Q Consensus 222 ~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~~ 253 (521)
.|+..||+.. ++.+...+.+.|.+++++=++.
T Consensus 159 llviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~ 192 (206)
T cd01410 159 FLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQP 192 (206)
T ss_pred EEEECcCceehhHHHHHHHHHhcCCeEEEECCCC
Confidence 4556777665 5566667777888888777653
No 269
>PRK07062 short chain dehydrogenase; Provisional
Probab=23.50 E-value=4.3e+02 Score=25.58 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=25.4
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEcc
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 251 (521)
...+|+..+|.-|.+++......|.+++++.-
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r 40 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGR 40 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 35688888888899999888888998776653
No 270
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=23.37 E-value=7.7e+02 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=21.9
Q ss_pred hCCCEEEEECCCHHHHHHHHHHHHhcCCccccCC
Q 009957 265 ANGAFVLSIDTDFDGCMKLIREVTSELPIYLANS 298 (521)
Q Consensus 265 ~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns 298 (521)
..|.+|..|... ..+.+.+++.++..+.++++.
T Consensus 62 ~~~g~iLfVgTk-~~~~~~V~~~A~~~~~~yv~~ 94 (258)
T PRK05299 62 ANGGKILFVGTK-KQAQEAIAEEAERCGMPYVNH 94 (258)
T ss_pred hCCCEEEEEECc-HHHHHHHHHHHHHhCCeeeCC
Confidence 457777777765 356677777777766655553
No 271
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=23.37 E-value=7.2e+02 Score=24.43 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=23.2
Q ss_pred hCCCEEEEECCCHHHHHHHHHHHHhcCCccccCC
Q 009957 265 ANGAFVLSIDTDFDGCMKLIREVTSELPIYLANS 298 (521)
Q Consensus 265 ~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns 298 (521)
..|.+|..|.... .+...+++.++..+.++++.
T Consensus 60 ~~~g~iLfV~tk~-~~~~~v~~~a~~~~~~yv~~ 92 (225)
T TIGR01011 60 ANGGKILFVGTKK-QAKEIIKEEAERCGMFYVNQ 92 (225)
T ss_pred hCCCEEEEEeCCH-HHHHHHHHHHHHhCCcccCC
Confidence 4688888887763 56677777777777666654
No 272
>PRK08303 short chain dehydrogenase; Provisional
Probab=23.34 E-value=4.3e+02 Score=26.80 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=42.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCc--------CC-HH-hHHhHHhCCCEEEEEC---CCHHHHHHHHHHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANK--------IS-IA-QLVQPIANGAFVLSID---TDFDGCMKLIREV 287 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~--------~s-~~-k~~q~~~~GA~Vi~v~---g~~dd~~~~~~~~ 287 (521)
..+|+..++--|.++|..-.+.|.+++++.-... .. .. ....+...|.+++.+. .+.+++.+.+.++
T Consensus 10 ~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 89 (305)
T PRK08303 10 VALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVERI 89 (305)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 5677777777899999777889988777542210 00 01 1123445676655444 3455666677666
Q ss_pred HhcC
Q 009957 288 TSEL 291 (521)
Q Consensus 288 ~~~~ 291 (521)
.++.
T Consensus 90 ~~~~ 93 (305)
T PRK08303 90 DREQ 93 (305)
T ss_pred HHHc
Confidence 5543
No 273
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.28 E-value=4.1e+02 Score=21.63 Aligned_cols=55 Identities=15% Similarity=0.020 Sum_probs=36.0
Q ss_pred ceEEEEeCCchH--HHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCC-CEEEEECCC
Q 009957 220 VVGVGCASTGDT--SAALSAYCASAGIPSIVFLPANKISIAQLVQPIANG-AFVLSIDTD 276 (521)
Q Consensus 220 ~~~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~G-A~Vi~v~g~ 276 (521)
...++.++.-|. +.+.+.+|++.+.+++++- . ..+......+..++ -+|+.++|.
T Consensus 25 ~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~-~l~~~~~~~l~~~~~~~v~iiGg~ 82 (92)
T PF04122_consen 25 SDKVYIASGDNFADALSASPLAAKNNAPILLVN-N-SLPSSVKAFLKSLNIKKVYIIGGE 82 (92)
T ss_pred CCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-C-CCCHHHHHHHHHcCCCEEEEECCC
Confidence 345666664455 4555678888888877655 4 46776777777764 567777664
No 274
>PRK05872 short chain dehydrogenase; Provisional
Probab=23.25 E-value=3.6e+02 Score=26.98 Aligned_cols=67 Identities=19% Similarity=0.096 Sum_probs=40.9
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhH-HhC--CCEEEE--EC-CCHHHHHHHHHHHHhc
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQP-IAN--GAFVLS--ID-TDFDGCMKLIREVTSE 290 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~-~~~--GA~Vi~--v~-g~~dd~~~~~~~~~~~ 290 (521)
...+|+..+|.-|.++|......|.+++++.- +..++.++ ... +..++. +| .+.++..+.++++.++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r----~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDL----EEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35688888889999999888889987666532 22233332 122 455555 44 3455556666665554
No 275
>PRK07063 short chain dehydrogenase; Provisional
Probab=23.24 E-value=3.9e+02 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=23.7
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+|+..+|--|.+++..-...|.+++++.
T Consensus 9 ~vlVtGas~gIG~~~a~~l~~~G~~vv~~~ 38 (260)
T PRK07063 9 VALVTGAAQGIGAAIARAFAREGAAVALAD 38 (260)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 567888888889999977778898876654
No 276
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=23.18 E-value=40 Score=33.37 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=17.5
Q ss_pred CCCCCCCccCCCCcee----ecC-CCCccee
Q 009957 84 AGPDSPEFYSLDEIVY----RSR-SGGLLDV 109 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~----~c~-cGGll~~ 109 (521)
.|..|++.|+.++... .|+ |||++.+
T Consensus 124 ~C~~C~~~~~~~~~~~~~~p~C~~Cgg~lrP 154 (242)
T PRK00481 124 RCTKCGQTYDLDEYLKPEPPRCPKCGGILRP 154 (242)
T ss_pred eeCCCCCCcChhhhccCCCCCCCCCCCccCC
Confidence 5888988887554332 384 8888754
No 277
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=23.11 E-value=5.1e+02 Score=26.25 Aligned_cols=47 Identities=11% Similarity=-0.113 Sum_probs=33.1
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHh-CCCEE
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIA-NGAFV 270 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~-~GA~V 270 (521)
...++.+.+|..|.++.-+|+..|.++++... +..+...++. +|++-
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~----~~~~~~~~~~~lGa~~ 200 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG----SDEKVDLLKNKLGFDD 200 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeC----CHHHHHHHHHhcCCce
Confidence 34566666688899999999999998655433 3446666666 88854
No 278
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=23.11 E-value=4.1e+02 Score=25.95 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=57.3
Q ss_pred EEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHh--HHhCCCEEEEECC-CHHHHHHHHHHHHhcCCccccCCC
Q 009957 223 VGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQ--PIANGAFVLSIDT-DFDGCMKLIREVTSELPIYLANSL 299 (521)
Q Consensus 223 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q--~~~~GA~Vi~v~g-~~dd~~~~~~~~~~~~~~~~~ns~ 299 (521)
|+..-.+-....+..++++.|+++.++.+.+ .. .++.. ......+++.... ...... .+.+..++.+....|+.
T Consensus 4 ~~~~~~~~~~~~l~~a~~~~g~~~~~~~~~~-~~-~~~~~~~~~~~~~d~v~~r~~~~~~~~-~~~~~l~~~g~~~~~~~ 80 (277)
T TIGR00768 4 ILYDRIRLDEKMLKEAAEELGIDYKVVTPPA-IP-LTFNEGPRELAELDVVIVRIVSMFRGL-AVARYLESLGVPVINSS 80 (277)
T ss_pred EEEcCCCHHHHHHHHHHHHcCCceEEEEhHH-cE-EeccCCCccCCCCCEEEEechhHhhHH-HHHHHHHHCCCeeeCCH
Confidence 4444344567788888999999999998764 11 11110 0011233333322 222222 33344455565555554
Q ss_pred ChHhHhhHHHHHHHHHHhcCCCCCcEEEEc
Q 009957 300 NSLRLEGQKTAAVEILQQFDWEVPDWVIVP 329 (521)
Q Consensus 300 Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP 329 (521)
+...+..-|...++++++.+-..|..+++.
T Consensus 81 ~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~ 110 (277)
T TIGR00768 81 DAILNAGDKFLTSQLLAKAGLPQPRTGLAG 110 (277)
T ss_pred HHHHHHhhHHHHHHHHHHCCCCCCCEEEeC
Confidence 444566677777888888765567766654
No 279
>PRK07825 short chain dehydrogenase; Provisional
Probab=23.10 E-value=4.6e+02 Score=25.54 Aligned_cols=66 Identities=15% Similarity=0.019 Sum_probs=40.4
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhH-HhCC-CEEEEEC-CCHHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQP-IANG-AFVLSID-TDFDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~-~~~G-A~Vi~v~-g~~dd~~~~~~~~~~~ 290 (521)
..+|+..||.-|.+++......|.++++..- ++.++..+ ...+ ++++.+| .+.++..+..+++.+.
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~~v~~~~r----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGARVAIGDL----DEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHH
Confidence 5688888899999999877788988666532 22233322 2233 5555555 3455555555555444
No 280
>PRK06841 short chain dehydrogenase; Provisional
Probab=23.02 E-value=4.3e+02 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=24.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEcc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLP 251 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP 251 (521)
+.+|+..+|--|.++|......|.+++++.-
T Consensus 17 ~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 17 VAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 5677787888899999888888998666543
No 281
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=22.89 E-value=3.6e+02 Score=29.40 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=49.0
Q ss_pred EEEeCCchHHHHHHHHHHhcCCCEEEEccCCcC-C----------------------HHhHHh-HHhCCCEEEEECCCHH
Q 009957 223 VGCASTGDTSAALSAYCASAGIPSIVFLPANKI-S----------------------IAQLVQ-PIANGAFVLSIDTDFD 278 (521)
Q Consensus 223 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~-s----------------------~~k~~q-~~~~GA~Vi~v~g~~d 278 (521)
|+.+-.|-.+.-+.-.|++.|++++++.+.... + ..++.+ .+..+++++...-.|.
T Consensus 5 vLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~l 84 (472)
T PRK07178 5 ILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFL 84 (472)
T ss_pred EEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCc
Confidence 444566777777777777777777666543210 1 111212 2345666654321111
Q ss_pred HHHHHHHHHHhcCCcccc-CCCChHhHhhHHHHHHHHHHhcC
Q 009957 279 GCMKLIREVTSELPIYLA-NSLNSLRLEGQKTAAVEILQQFD 319 (521)
Q Consensus 279 d~~~~~~~~~~~~~~~~~-ns~Np~~i~G~~T~a~EI~eQl~ 319 (521)
.-.....+.+++.|.-++ ++.....+.+-|....+++++.+
T Consensus 85 se~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~G 126 (472)
T PRK07178 85 SENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAG 126 (472)
T ss_pred ccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCC
Confidence 000112334455554322 33344566777777778777765
No 282
>PRK06198 short chain dehydrogenase; Provisional
Probab=22.75 E-value=4.4e+02 Score=25.34 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=40.1
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHH-hHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIA-QLVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~-k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
+.+++..+|..|..++......|.+.++++..+..... ....+...|.++..+..| .++..+.++++.++
T Consensus 8 ~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 8 VALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46777888889999998888889984444443311111 112344567776544433 34444555444433
No 283
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=22.73 E-value=1.3e+02 Score=27.03 Aligned_cols=124 Identities=16% Similarity=0.214 Sum_probs=65.2
Q ss_pred EEEeCCchHHHHHHHHHHhcCCCE-EEEccCCc-CCHHhHH---hHH-hCCCEEEEECCCHHHHHHHHHHHHhcCCccc-
Q 009957 223 VGCASTGDTSAALSAYCASAGIPS-IVFLPANK-ISIAQLV---QPI-ANGAFVLSIDTDFDGCMKLIREVTSELPIYL- 295 (521)
Q Consensus 223 Vv~aSSGN~g~AlAa~aa~~Gi~~-~V~vP~~~-~s~~k~~---q~~-~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~- 295 (521)
.+...+|+-|.++|......++-- ++++..+. ....+.. +.. ..+..+....++++++. +.....
T Consensus 4 ~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--------~aDivvi 75 (141)
T PF00056_consen 4 AIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALK--------DADIVVI 75 (141)
T ss_dssp EEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGT--------TESEEEE
T ss_pred EEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccc--------cccEEEE
Confidence 445667999999998888888744 55555431 0111111 122 23445554556666432 211111
Q ss_pred -cC-CCChH--h---HhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEE
Q 009957 296 -AN-SLNSL--R---LEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVC 360 (521)
Q Consensus 296 -~n-s~Np~--~---i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~ 360 (521)
.. +..|. | ++.-..+..|+.+++....|+.+++=++|=-++..-+ ..+..|+ +..|++|
T Consensus 76 tag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~--~~~kviG 141 (141)
T PF00056_consen 76 TAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGF--PPNKVIG 141 (141)
T ss_dssp TTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTS--SGGGEEE
T ss_pred eccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCc--CcccCcC
Confidence 10 11111 2 3333346666666654335887777777777766555 3556676 4557765
No 284
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=22.69 E-value=4.1e+02 Score=25.61 Aligned_cols=30 Identities=23% Similarity=0.020 Sum_probs=24.2
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+|+..+|.-|.+++..-...|.+++++.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~ 33 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVAD 33 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 468888889999999977777898876664
No 285
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=22.31 E-value=46 Score=22.21 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=9.8
Q ss_pred CCCCCCCCCccCC-CCceeecC-CC
Q 009957 82 FNAGPDSPEFYSL-DEIVYRSR-SG 104 (521)
Q Consensus 82 ~~~~~~cg~~~~~-~~~~~~c~-cG 104 (521)
+.+|+.|+.+|.. +..++.|+ ||
T Consensus 2 ~p~Cp~C~se~~y~D~~~~vCp~C~ 26 (30)
T PF08274_consen 2 LPKCPLCGSEYTYEDGELLVCPECG 26 (30)
T ss_dssp S---TTT-----EE-SSSEEETTTT
T ss_pred CCCCCCCCCcceeccCCEEeCCccc
Confidence 3479999987776 45666784 66
No 286
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=22.29 E-value=8.1e+02 Score=24.66 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=22.7
Q ss_pred cEEEEc-CCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchh
Q 009957 324 DWVIVP-GGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPL 369 (521)
Q Consensus 324 D~VvVP-~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l 369 (521)
+.|+.+ +||.|...+.+ ++..|+ +++.+.|++.++.
T Consensus 58 ~~vv~aSsGN~g~alA~~-----a~~~Gl-----~~~i~vp~~~~~~ 94 (298)
T TIGR01139 58 KTIVEPTSGNTGIALAMV-----AAARGY-----KLILTMPETMSIE 94 (298)
T ss_pred CEEEEeCCChhHHHHHHH-----HHHcCC-----eEEEEeCCccCHH
Confidence 344444 67777766665 567776 5666777776544
No 287
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=22.29 E-value=3.9e+02 Score=25.95 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=38.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHH-hCCCEEEEECCCH---HHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPI-ANGAFVLSIDTDF---DGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~-~~GA~Vi~v~g~~---dd~~~~~~~~~~ 289 (521)
..+|+..||.-|.+++-.....|.+++++. .+ ..++..+. .+|.++..+..|. ++..+.++++.+
T Consensus 7 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~-r~---~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 7 VVLVTGGASGLGRAIVDRFVAEGARVAVLD-KS---AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEe-CC---HHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 567888888899999988888899877653 22 22333333 2354554444433 333444444433
No 288
>PRK07985 oxidoreductase; Provisional
Probab=22.29 E-value=5.5e+02 Score=25.67 Aligned_cols=70 Identities=10% Similarity=-0.011 Sum_probs=40.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCC-HHhHH-hHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS-IAQLV-QPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s-~~k~~-q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
+.+|+..+|.-|.++|....+.|.++++........ ..++. .+...|.++..+..| .++..+.++++.++
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578888889999999988888899887754321111 11121 233456665444433 34445555554443
No 289
>PRK06138 short chain dehydrogenase; Provisional
Probab=22.18 E-value=4.3e+02 Score=25.19 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=38.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHh--HHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQ--LVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k--~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
+.+|++.+|-.|.+++..-...|.+++++. .+ ....+ ...+. .|.++..+..| .++..+.+.++.++
T Consensus 7 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~-r~-~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 7 VAIVTGAGSGIGRATAKLFAREGARVVVAD-RD-AEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEec-CC-HHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 568888889999999977777888766554 32 11111 11122 46655555443 44445555555443
No 290
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=22.05 E-value=3.1e+02 Score=25.68 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=26.1
Q ss_pred CEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHH
Q 009957 245 PSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREV 287 (521)
Q Consensus 245 ~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~ 287 (521)
++.|+-..+.+.......+...|.+|+.+.-+.+.+.+.+.++
T Consensus 30 ~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 30 TAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 4444444454444444556678999988877776666555544
No 291
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=21.88 E-value=3.6e+02 Score=25.52 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=38.3
Q ss_pred EEEeCCchHHHHHHHHHHhcCCCEEEEccCCcC-CHHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 223 VGCASTGDTSAALSAYCASAGIPSIVFLPANKI-SIAQLVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 223 Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~-s~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
+|+..+|.-|.++|....+.|.+++++.-.+.. .......+...+.++..+..| .++..+.+++..++
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 73 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAE 73 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 566777888999998888889987766533210 011122244456666555543 33444444444333
No 292
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=21.88 E-value=5.3e+02 Score=24.87 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=40.7
Q ss_pred ceEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHH--hHHhHHhCCCEEEEECCC---HHHHHHHHHHHHhc
Q 009957 220 VVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIA--QLVQPIANGAFVLSIDTD---FDGCMKLIREVTSE 290 (521)
Q Consensus 220 ~~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~--k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~~ 290 (521)
...+|+..+|.-|.+++....+.|.++++....+ .+.. ....+...|.++..+..| .++..+..+++.++
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 82 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSD-EEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKE 82 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 3568888888889999988888998877765432 1111 122244456666544433 33334444444333
No 293
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=21.85 E-value=2.3e+02 Score=27.19 Aligned_cols=64 Identities=28% Similarity=0.474 Sum_probs=35.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHH
Q 009957 268 AFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFK 344 (521)
Q Consensus 268 A~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~ 344 (521)
.+|+.++.+ +++.+..++-+++.+. + |-..++|. +.|.+.++. .||.+|+..| +++-++.....
T Consensus 59 ~~v~AIe~~-~~a~~~~~~N~~~fg~---~--n~~vv~g~---Ap~~L~~~~--~~daiFIGGg--~~i~~ile~~~ 122 (187)
T COG2242 59 GRVIAIERD-EEALELIERNAARFGV---D--NLEVVEGD---APEALPDLP--SPDAIFIGGG--GNIEEILEAAW 122 (187)
T ss_pred ceEEEEecC-HHHHHHHHHHHHHhCC---C--cEEEEecc---chHhhcCCC--CCCEEEECCC--CCHHHHHHHHH
Confidence 345555554 2444555554444331 1 22222332 455566665 6899998765 77888876543
No 294
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=21.69 E-value=8.8e+02 Score=24.85 Aligned_cols=187 Identities=18% Similarity=0.155 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCEEEEccCCcC-CHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHH
Q 009957 232 SAALSAYCASAGIPSIVFLPANKI-SIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTA 310 (521)
Q Consensus 232 g~AlAa~aa~~Gi~~~V~vP~~~~-s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~ 310 (521)
|+.+|.-.+.+|-++++-=|.-.+ ++.........|++|+ + ||++. .+.+-.. --+.|+.- +...|
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv--~---dD~ea------a~~~Ei~-VLFTPFGk-~T~~I 99 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVV--S---DDAEA------AEHGEIH-VLFTPFGK-ATFGI 99 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEe--c---Cchhh------hhcceEE-EEecccch-hhHHH
Confidence 566777777888888888887534 3444566778888886 2 22211 1111100 01345431 12347
Q ss_pred HHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchhhHHHhhCCcceeecccccchh
Q 009957 311 AVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPLYLYYKSGWKDFKAVKASTTFA 390 (521)
Q Consensus 311 a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l~~~~~~G~~~~~~~~~~~Tia 390 (521)
+.||++.+.. .+|++++-+-..+ .+|.++ +-+|. ...+=+||.+-.-..+-..=+.| .|.-. ...|
T Consensus 100 arei~~hvpE---gAVicnTCT~sp~-vLy~~L----E~~Lr-~kR~dVGvssmHPAgvPGtp~h~--~yvia-gr~t-- 165 (340)
T COG4007 100 AREILEHVPE---GAVICNTCTVSPV-VLYYSL----EGELR-TKREDVGVSSMHPAGVPGTPQHG--HYVIA-GRST-- 165 (340)
T ss_pred HHHHHhhCcC---CcEecccccCchh-HHHHHh----hhhhc-CchhhcCccccCCCCCCCCCCCc--eEEEe-ccCC--
Confidence 8999998863 5788887666555 455443 22221 11134455433211110000001 11100 0111
Q ss_pred hhhccCCCccHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHhcCCeeccchHHHHHHHHHHH
Q 009957 391 SAIQIGDPVSIDRAVYALKNCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALIKLR 452 (521)
Q Consensus 391 ~~i~i~~P~~~~~~l~~l~~~~g~~v~Vsd~Ei~~A~~~l~~eGi~~ePssA~alAa~~~l~ 452 (521)
.|+....-.-.++.....+..+-.++.++ .|...++..+ |.+ -++.++.|++.+.
T Consensus 166 ~g~elATeEQi~r~velaes~Gk~~yv~p-adv~s~VaDm---g~l---vtav~l~gvldyy 220 (340)
T COG4007 166 EGKELATEEQIERCVELAESTGKEVYVLP-ADVVSAVADM---GVL---VTAVALSGVLDYY 220 (340)
T ss_pred CceeeccHHHHHHHHHHHHhcCCceEecC-HHHHHHhhhh---HHH---HHHHHHHHHHHHH
Confidence 14443333334555665555544444444 7777766543 111 1566677766654
No 295
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.65 E-value=6.2e+02 Score=24.63 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=22.2
Q ss_pred eEEEEeCC--chHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCAST--GDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSS--GN~g~AlAa~aa~~Gi~~~V~v 250 (521)
..+|+..+ +.-|.++|..-.+.|.++++..
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~G~~v~~~~ 40 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTY 40 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEec
Confidence 45666654 6789999977778899877654
No 296
>PRK07775 short chain dehydrogenase; Provisional
Probab=21.62 E-value=4.4e+02 Score=25.88 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=39.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhH-HhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQL-VQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~-~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
..+|+..+|..|.+++-.....|.+++++.-.. ....+. ..+...|.++..+..| .++..+..+++.+
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRV-EKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEE 83 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 467777788889999987788898776654321 111111 1244557776655544 3444445554433
No 297
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=21.62 E-value=22 Score=27.47 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=22.8
Q ss_pred eecCCCCCCCCCCccCCCCceeec--CCCCcce
Q 009957 78 KYVPFNAGPDSPEFYSLDEIVYRS--RSGGLLD 108 (521)
Q Consensus 78 ~~v~~~~~~~cg~~~~~~~~~~~c--~cGGll~ 108 (521)
.-+|+..|.-||+..+.++.. | +||-.|.
T Consensus 4 ~v~PH~HC~VCg~aIp~de~~--CSe~C~eil~ 34 (64)
T COG4068 4 GVVPHRHCVVCGKAIPPDEQV--CSEECGEILN 34 (64)
T ss_pred CCCCCccccccCCcCCCccch--HHHHHHHHHH
Confidence 357999999999999987644 7 5887764
No 298
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=21.58 E-value=2.3e+02 Score=31.33 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=35.6
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDT 275 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g 275 (521)
+.|---|||-+|.+||..+...|-+|+++.-..... .-+|.+++.|+.
T Consensus 274 R~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~-------~p~~v~~i~V~t 321 (475)
T PRK13982 274 RYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA-------DPQGVKVIHVES 321 (475)
T ss_pred eeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC-------CCCCceEEEecC
Confidence 333346899999999999999999999987332111 135888888875
No 299
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=21.55 E-value=4e+02 Score=25.41 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=38.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCC-HHhHHhHHhCCCEEEEECCC---HHHHHHHHHHHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKIS-IAQLVQPIANGAFVLSIDTD---FDGCMKLIREVT 288 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s-~~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~ 288 (521)
+.+|+..+|.-|.+++..-.+.|.++++.+-.+... .....++...+.++..+..| .++..+..+++.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQ 75 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHH
Confidence 467788888889999977777898876654322101 11123344556666555443 333444444443
No 300
>PRK00654 glgA glycogen synthase; Provisional
Probab=21.54 E-value=8e+02 Score=26.46 Aligned_cols=91 Identities=26% Similarity=0.183 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHh------H----------HhCCCEEEEECCCHHHHHHHHHHHHhcC
Q 009957 228 TGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQ------P----------IANGAFVLSIDTDFDGCMKLIREVTSEL 291 (521)
Q Consensus 228 SGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q------~----------~~~GA~Vi~v~g~~dd~~~~~~~~~~~~ 291 (521)
-|++..+|+-+-++.|.+|.|++|.-..-..+... . ...|++|+.++.. +...+.
T Consensus 19 l~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v~~~---------~~~~~~ 89 (466)
T PRK00654 19 LGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLIDAP---------HLFDRP 89 (466)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEEeCH---------HHcCCC
Confidence 35667777777677899999999974211101000 0 1247777777641 111222
Q ss_pred CccccCCCChHhHhhHHHHHHHHHHhcCCCCCcEEEEc
Q 009957 292 PIYLANSLNSLRLEGQKTAAVEILQQFDWEVPDWVIVP 329 (521)
Q Consensus 292 ~~~~~ns~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP 329 (521)
.+|. ...|..|..-....+.|++.++++ .||.|-.=
T Consensus 90 ~~y~-~~d~~~r~~~f~~~~~~~~~~~~~-~pDiiH~h 125 (466)
T PRK00654 90 SGYG-YPDNGERFAFFSWAAAEFAEGLDP-RPDIVHAH 125 (466)
T ss_pred CCCC-CcChHHHHHHHHHHHHHHHHhcCC-CCceEEEC
Confidence 2221 122444443344456677777654 57766444
No 301
>PRK06057 short chain dehydrogenase; Provisional
Probab=21.50 E-value=5.8e+02 Score=24.50 Aligned_cols=30 Identities=20% Similarity=0.060 Sum_probs=24.5
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+|+..+|.-|.+++-.....|.+++++.
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGD 38 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 567888889999999988888898877663
No 302
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.42 E-value=70 Score=22.11 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCCCCCCccCCCCc-------eeec-CCCCcc
Q 009957 84 AGPDSPEFYSLDEI-------VYRS-RSGGLL 107 (521)
Q Consensus 84 ~~~~cg~~~~~~~~-------~~~c-~cGGll 107 (521)
.|+.|+..|..++. ..+| .||-.+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 58888888877654 3457 476544
No 303
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=21.35 E-value=54 Score=36.19 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=22.9
Q ss_pred ccceeecCCC-CCCCCCC-------ccCCC-CceeecCCC
Q 009957 74 TFSAKYVPFN-AGPDSPE-------FYSLD-EIVYRSRSG 104 (521)
Q Consensus 74 ~~~~~~v~~~-~~~~cg~-------~~~~~-~~~~~c~cG 104 (521)
.+...|.||+ .|.+||+ .++-+ .+.|+|.||
T Consensus 162 ~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~G 201 (521)
T COG1384 162 ELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCECG 201 (521)
T ss_pred cccCCceeccccccccCCcceeEEEEecCCceEEEEecCC
Confidence 5566677775 6999999 45555 667889998
No 304
>PTZ00066 pyruvate kinase; Provisional
Probab=21.30 E-value=7.4e+02 Score=27.67 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=6.0
Q ss_pred CceeEeeec
Q 009957 28 PTVISCSFS 36 (521)
Q Consensus 28 ~~~~~~~~~ 36 (521)
.|-|-|+..
T Consensus 39 ktKIi~TiG 47 (513)
T PTZ00066 39 KTHIVCTMG 47 (513)
T ss_pred CCeEEEeeC
Confidence 477777664
No 305
>PRK07476 eutB threonine dehydratase; Provisional
Probab=21.29 E-value=9e+02 Score=24.78 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=22.4
Q ss_pred EEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCCCchh
Q 009957 325 WVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAANANPL 369 (521)
Q Consensus 325 ~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~~~~l 369 (521)
.|...+||.|...+.+ ++..|+ +++.+.|++.++.
T Consensus 70 vv~aSsGN~g~alA~~-----a~~~G~-----~~~i~vp~~~~~~ 104 (322)
T PRK07476 70 VVTASTGNHGRALAYA-----ARALGI-----RATICMSRLVPAN 104 (322)
T ss_pred EEEECCChHHHHHHHH-----HHHhCC-----CEEEEeCCCCCHH
Confidence 4444567777776665 567776 4666667776644
No 306
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=21.29 E-value=46 Score=32.57 Aligned_cols=31 Identities=10% Similarity=-0.014 Sum_probs=21.3
Q ss_pred EEEEeCCchH--HHHHHHHHHhcCCCEEEEccC
Q 009957 222 GVGCASTGDT--SAALSAYCASAGIPSIVFLPA 252 (521)
Q Consensus 222 ~Vv~aSSGN~--g~AlAa~aa~~Gi~~~V~vP~ 252 (521)
.++..||+.. +..+..++++.|.+++++=+.
T Consensus 175 ~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~ 207 (222)
T cd01413 175 FIVLGSSLVVYPANLLPLIAKENGAKLVIVNAD 207 (222)
T ss_pred EEEEccCCEeccHhHHHHHHHHcCCeEEEEcCC
Confidence 4556777765 556677777888888777665
No 307
>PRK06701 short chain dehydrogenase; Provisional
Probab=21.28 E-value=5e+02 Score=25.92 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=39.9
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCH-HhHHhHHhCCCEEEEECCC---HHHHHHHHHHHHh
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISI-AQLVQPIANGAFVLSIDTD---FDGCMKLIREVTS 289 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~-~k~~q~~~~GA~Vi~v~g~---~dd~~~~~~~~~~ 289 (521)
..+|+..+|.-|.+++....+.|.+++++.-...... .....+...|.++..+..| .++..+..+++.+
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5677777888899999777888998776643321111 1122344557666555443 3334444444433
No 308
>PRK11823 DNA repair protein RadA; Provisional
Probab=21.20 E-value=57 Score=35.56 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=18.2
Q ss_pred eeecCCCCCCCCCCccCCCCceeecC-CC
Q 009957 77 AKYVPFNAGPDSPEFYSLDEIVYRSR-SG 104 (521)
Q Consensus 77 ~~~v~~~~~~~cg~~~~~~~~~~~c~-cG 104 (521)
..|+ |..||.+.. ...++|+ ||
T Consensus 6 ~~y~----C~~Cg~~~~--~~~g~Cp~C~ 28 (446)
T PRK11823 6 TAYV----CQECGAESP--KWLGRCPECG 28 (446)
T ss_pred CeEE----CCcCCCCCc--ccCeeCcCCC
Confidence 4688 999999887 6788996 76
No 309
>PRK07890 short chain dehydrogenase; Provisional
Probab=21.11 E-value=2.5e+02 Score=27.05 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=25.0
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+|+..+|--|.++|......|.+++++.
T Consensus 7 ~vlItGa~~~IG~~la~~l~~~G~~V~~~~ 36 (258)
T PRK07890 7 VVVVSGVGPGLGRTLAVRAARAGADVVLAA 36 (258)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 578888888899999988888999877664
No 310
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=21.04 E-value=3.3e+02 Score=25.06 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=35.4
Q ss_pred CchHHHHHHHHHHhcCCCEEEEccCCc-CCHH--hH----HhHHhCCCEEEEECCCHHHH
Q 009957 228 TGDTSAALSAYCASAGIPSIVFLPANK-ISIA--QL----VQPIANGAFVLSIDTDFDGC 280 (521)
Q Consensus 228 SGN~g~AlAa~aa~~Gi~~~V~vP~~~-~s~~--k~----~q~~~~GA~Vi~v~g~~dd~ 280 (521)
-+|++.|+...+++.|+.++++.|++- .++. -+ ......|.++... .+.+++
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~-~~~~e~ 70 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT-DDIEEA 70 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE-SSHHHH
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE-eCHHHh
Confidence 379999999999999999999999971 2331 11 1133458877755 455443
No 311
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=20.99 E-value=53 Score=22.67 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=9.1
Q ss_pred CCCCCCCCCCccCC
Q 009957 81 PFNAGPDSPEFYSL 94 (521)
Q Consensus 81 ~~~~~~~cg~~~~~ 94 (521)
|+++|..||..|++
T Consensus 20 ~~isC~~CGPr~~i 33 (35)
T PF07503_consen 20 QFISCTNCGPRYSI 33 (35)
T ss_dssp TT--BTTCC-SCCC
T ss_pred cCccCCCCCCCEEE
Confidence 56699999998875
No 312
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=20.96 E-value=6.8e+02 Score=25.76 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=36.4
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhH-Hh-HHhCCCEEEEECCCHH
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQL-VQ-PIANGAFVLSIDTDFD 278 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~-~q-~~~~GA~Vi~v~g~~d 278 (521)
+..+++-.+|+..|++..+++.|+++++..|++-..+... .+ ....|.++... .+.+
T Consensus 154 ~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~-~d~~ 212 (304)
T PRK00779 154 KVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVT-HDPK 212 (304)
T ss_pred EEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEE-cCHH
Confidence 3333333578899999999999999999999872222222 22 34568777533 3444
No 313
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.94 E-value=1e+03 Score=25.42 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCEEEEccCCcCCHHhHHhHHhCCCEEEEECCCHHHHHHHHHHHHhcCCccccCCCChHhHhhHHHHHH
Q 009957 233 AALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSIDTDFDGCMKLIREVTSELPIYLANSLNSLRLEGQKTAAV 312 (521)
Q Consensus 233 ~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~~~GA~Vi~v~g~~dd~~~~~~~~~~~~~~~~~ns~Np~~i~G~~T~a~ 312 (521)
..+.-+=...|+++.+++|.+ .+..++..+.....+++... +.....++.+.++.+.-++.. +|+.+++....-.
T Consensus 182 ~ei~~lL~~~Gl~v~~~~~~~-~~~~~i~~~~~A~lniv~~~---~~~~~~a~~L~~~~GiP~~~~-~p~G~~~t~~~l~ 256 (430)
T cd01981 182 RELKRLLHTLGIEVNVVIPEG-ASVDDLNELPKAWFNIVPYR---EYGLSAALYLEEEFGMPSVKI-TPIGVVATARFLR 256 (430)
T ss_pred HHHHHHHHHcCCeEEEEEcCC-CCHHHHHhhhhCeEEEEecH---HHHHHHHHHHHHHhCCCeEec-cCCChHHHHHHHH
Confidence 455566677899998888886 46556555543333443221 123445555555655433333 6666666666656
Q ss_pred HHHHhcC
Q 009957 313 EILQQFD 319 (521)
Q Consensus 313 EI~eQl~ 319 (521)
+|.+.++
T Consensus 257 ~i~~~~g 263 (430)
T cd01981 257 EIQELLG 263 (430)
T ss_pred HHHHHhC
Confidence 6655554
No 314
>PRK05599 hypothetical protein; Provisional
Probab=20.88 E-value=3.9e+02 Score=25.81 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=19.1
Q ss_pred EEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 222 GVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 222 ~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
.+++..++.-|.++|..-.+ |.++++..
T Consensus 3 vlItGas~GIG~aia~~l~~-g~~Vil~~ 30 (246)
T PRK05599 3 ILILGGTSDIAGEIATLLCH-GEDVVLAA 30 (246)
T ss_pred EEEEeCccHHHHHHHHHHhC-CCEEEEEe
Confidence 46677777889999855444 87666653
No 315
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.87 E-value=59 Score=20.16 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=14.0
Q ss_pred CCCCCCCccCCCCceeec-CCCCc
Q 009957 84 AGPDSPEFYSLDEIVYRS-RSGGL 106 (521)
Q Consensus 84 ~~~~cg~~~~~~~~~~~c-~cGGl 106 (521)
.|+.||.+++-+ .. .| .||-.
T Consensus 1 ~Cp~CG~~~~~~-~~-fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDD-AK-FCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCc-Cc-chhhhCCc
Confidence 388999999743 33 47 48754
No 316
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=20.70 E-value=4.6e+02 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.034 Sum_probs=25.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEccC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFLPA 252 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~vP~ 252 (521)
..+|+..++.-|.++|..-.+.|.++++....
T Consensus 10 ~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 10 TLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 56788888888999998778889987766543
No 317
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=20.58 E-value=2.6e+02 Score=28.50 Aligned_cols=62 Identities=10% Similarity=-0.032 Sum_probs=41.4
Q ss_pred HhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCC
Q 009957 304 LEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAAN 365 (521)
Q Consensus 304 i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~ 365 (521)
..+|..++-+|++.+..+..-.+-.|+|+|=+++.+.-++..+...+-..+..+++-+..+.
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~ 71 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTV 71 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccH
Confidence 56789999999988875444556679999999988877666655544210123666655544
No 318
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=20.58 E-value=2.6e+02 Score=28.50 Aligned_cols=62 Identities=10% Similarity=-0.032 Sum_probs=41.4
Q ss_pred HhhHHHHHHHHHHhcCCCCCcEEEEcCCchhHHHHHHHHHHHHHHcCCCCCCCeEEEeccCC
Q 009957 304 LEGQKTAAVEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCHELGLVDRMPRLVCTQAAN 365 (521)
Q Consensus 304 i~G~~T~a~EI~eQl~~~~pD~VvVP~G~Gg~l~G~~kgf~~l~~~Gl~~~~prli~Vq~~~ 365 (521)
..+|..++-+|++.+..+..-.+-.|+|+|=+++.+.-++..+...+-..+..+++-+..+.
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~ 71 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTV 71 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccH
Confidence 56789999999988875444556679999999988877666655544210123666655544
No 319
>PRK12827 short chain dehydrogenase; Provisional
Probab=20.47 E-value=7.2e+02 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=24.7
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+|+..+|-.|.++|......|.+++++.
T Consensus 8 ~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 8 RVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 567888889999999987778899877765
No 320
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.42 E-value=5.1e+02 Score=25.31 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=37.3
Q ss_pred eEEEEe--CCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHhHH-hCC-CEEEEEC-CCHHHHHHHHHHHHhc
Q 009957 221 VGVGCA--STGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPI-ANG-AFVLSID-TDFDGCMKLIREVTSE 290 (521)
Q Consensus 221 ~~Vv~a--SSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q~~-~~G-A~Vi~v~-g~~dd~~~~~~~~~~~ 290 (521)
..+|+. +++--|.++|-...+.|.++++..-..+ ....+..+. ..| +..+.+| .+.+++.+.+.++.++
T Consensus 8 ~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (261)
T PRK08690 8 KILITGMISERSIAYGIAKACREQGAELAFTYVVDK-LEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH 81 (261)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHH-HHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH
Confidence 456665 3556799999877889998877542221 222333332 223 2333444 3455555555555443
No 321
>PRK07774 short chain dehydrogenase; Provisional
Probab=20.38 E-value=4.8e+02 Score=24.86 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=24.8
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL 250 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v 250 (521)
+.+++..+|--|.+++......|.+++++.
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~ 37 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVAD 37 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578888889999999988788898877764
No 322
>PLN02342 ornithine carbamoyltransferase
Probab=20.36 E-value=6.2e+02 Score=26.70 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHhcCCCEEEEccCCc-CCHHhHHhHHhCCC-EEEEECCCHH
Q 009957 229 GDTSAALSAYCASAGIPSIVFLPANK-ISIAQLVQPIANGA-FVLSIDTDFD 278 (521)
Q Consensus 229 GN~g~AlAa~aa~~Gi~~~V~vP~~~-~s~~k~~q~~~~GA-~Vi~v~g~~d 278 (521)
.|+..|+...+++.|+++++..|++- ++..-+.+....|. .+. +..+.+
T Consensus 204 ~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~-~~~d~~ 254 (348)
T PLN02342 204 NNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIE-ITNDPA 254 (348)
T ss_pred chhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEE-EEcCHH
Confidence 46799999999999999999999872 22222333444564 443 333444
No 323
>PRK06354 pyruvate kinase; Provisional
Probab=20.35 E-value=7.6e+02 Score=28.08 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=12.7
Q ss_pred CchHHHHHHHHHHhcCCCEEEEccC
Q 009957 228 TGDTSAALSAYCASAGIPSIVFLPA 252 (521)
Q Consensus 228 SGN~g~AlAa~aa~~Gi~~~V~vP~ 252 (521)
||+++..++.| +..++++.+.|.
T Consensus 387 sG~ta~~vsk~--Rp~~pI~a~t~~ 409 (590)
T PRK06354 387 SGATARNVSKY--RPKTPILAVTPN 409 (590)
T ss_pred ChHHHHHHHhh--CCCCCEEEECCC
Confidence 56666666544 344555555554
No 324
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=20.34 E-value=6.2e+02 Score=27.25 Aligned_cols=94 Identities=27% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCchHHHHHHHHHHhcCCCEEEEccCCcCCHHhHHh-----------------------HHhCCCEEEEECCCHHHHHHH
Q 009957 227 STGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQ-----------------------PIANGAFVLSIDTDFDGCMKL 283 (521)
Q Consensus 227 SSGN~g~AlAa~aa~~Gi~~~V~vP~~~~s~~k~~q-----------------------~~~~GA~Vi~v~g~~dd~~~~ 283 (521)
.-|+...+|+.+-++.|.+|.|++|.-..-..+... ....|++++.++...
T Consensus 18 Gl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~------ 91 (473)
T TIGR02095 18 GLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVEGVPVYFIDNPS------ 91 (473)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEECCceEEEEECHH------
Confidence 345777788877788899999999975211111110 112356666666532
Q ss_pred HHHHHhcCC-ccccC-CCChHhHhhHHHHHHHHHHhcCCCCCcEEEEcC
Q 009957 284 IREVTSELP-IYLAN-SLNSLRLEGQKTAAVEILQQFDWEVPDWVIVPG 330 (521)
Q Consensus 284 ~~~~~~~~~-~~~~n-s~Np~~i~G~~T~a~EI~eQl~~~~pD~VvVP~ 330 (521)
...+.+ .|..+ ..|..+..-....+.|++.++++ .||.|-+=-
T Consensus 92 ---~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~-~~DiiH~hd 136 (473)
T TIGR02095 92 ---LFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGW-QPDVVHAHD 136 (473)
T ss_pred ---HcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCEEEECC
Confidence 122212 33211 12444544455667787777664 688655443
No 325
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.22 E-value=4.8e+02 Score=24.79 Aligned_cols=56 Identities=20% Similarity=0.064 Sum_probs=34.3
Q ss_pred eEEEEeCCchHHHHHHHHHHhcCCCEEEEc-cCCcCCHHhHHhHHhCCCEEEEECCC
Q 009957 221 VGVGCASTGDTSAALSAYCASAGIPSIVFL-PANKISIAQLVQPIANGAFVLSIDTD 276 (521)
Q Consensus 221 ~~Vv~aSSGN~g~AlAa~aa~~Gi~~~V~v-P~~~~s~~k~~q~~~~GA~Vi~v~g~ 276 (521)
+.+++..+|--|.+++......|.++++.. +...........+...|.++..+..|
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLAD 64 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEec
Confidence 567888888889999987778898876644 22110112223445566665544443
No 326
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=1.7e+02 Score=28.43 Aligned_cols=40 Identities=30% Similarity=0.325 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeCCCCCCchHHHHhhhcchh
Q 009957 445 LTALIKLRNSGVIGPLDRTVVVSTAHGLKFTQSKIDYHSKEI 486 (521)
Q Consensus 445 lAa~~~l~~~g~i~~~~~vV~v~TG~g~K~~~~~~~~~~~~~ 486 (521)
++.++|+.-=+ .+|++|+++.|++++-..+++...+...+
T Consensus 28 istfkKl~~~~--~pGdRvlvl~taGNLA~tQaV~~ll~e~~ 67 (255)
T COG3484 28 ISTFKKLFVFE--LPGDRVLVLCTAGNLAITQAVLHLLDERI 67 (255)
T ss_pred HHHHHHHhhcc--CCCceEEEEEecCccHHHHHHHHHHHHHh
Confidence 45666765322 37899999999999999999887665443
Done!