BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009958
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 106 DWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYM 151
+W AD+E+LL++ E GLGNWA+IA++VG +TKE C +HY Y+
Sbjct: 11 NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 105 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSP 154
P W A +E+ LLE + G GNW ++A + TKTKE C +HY Y + P
Sbjct: 9 PSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK-YFSGP 57
>pdb|2ELJ|A Chain A, Solution Structure Of The Swirm Domain Of Baker's Yeast
Transcriptional Adapter 2
Length = 88
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 433 SGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVN-N 491
SG + + ++D I + LLS E++LC ++++ P YL ++EVM RE+ N +
Sbjct: 3 SGSSGNMTISD--IQHAPDYALLSNDEQQLCIQLKILPKPYLVLKEVMFRELLKTGGNLS 60
Query: 492 KADAHHLFKIEPSKIDRVYDML 513
K+ L I+P K +R+YD
Sbjct: 61 KSACRELLNIDPIKANRIYDFF 82
>pdb|2CUJ|A Chain A, Solution Structure Of Swirm Domain Of Mouse
Transcriptional Adaptor 2-Like
Length = 108
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 433 SGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNK 492
SG+ S+ +N + G T+ L+E EK LC +RL P YL + + E
Sbjct: 22 SGRRSAPPLN---LTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRL 78
Query: 493 ADAHHLFKIEPSKIDRVYDMLVKKG 517
A A L KI+ +K ++YD L+++G
Sbjct: 79 AQARALIKIDVNKTRKIYDFLIREG 103
>pdb|2AQE|A Chain A, Structural And Functional Analysis Of Ada2 Alpha Swirm
Domain
pdb|2AQF|A Chain A, Structural And Functional Analysis Of Ada2 Alpha Swirm
Domain
Length = 90
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 433 SGQASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNK 492
SG+ S+ +N + G T+ L+E EK LC +RL P YL + + E
Sbjct: 4 SGRRSAPPLN---LTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRL 60
Query: 493 ADAHHLFKIEPSKIDRVYDMLVKKG 517
A A L KI+ +K ++YD L+++G
Sbjct: 61 AQARALIKIDVNKTRKIYDFLIREG 85
>pdb|1TOT|A Chain A, Zz Domain Of Cbp- A Novel Fold For A Protein Interaction
Module
Length = 52
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 44 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHK 87
R +Y CN C + + R C VC D+DLCI C++ + H HK
Sbjct: 4 RFVYTCNECKHHV--ETRWHCTVCEDYDLCINCYN--TKSHTHK 43
>pdb|2E5R|A Chain A, Solution Structure Of The Zz Domain Of Dystrobrevin
Alpha (Dystrobrevin-Alpha)
Length = 63
Score = 35.4 bits (80), Expect = 0.069, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 42 GKRALYH---CNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNH 90
G ++H C+YC+ + R +C C ++ LC +CF G H + H
Sbjct: 4 GSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQH 55
>pdb|2YUS|A Chain A, Solution Structure Of The Sant Domain Of Human SwiSNF-
Related Matrix-Associated Actin-Dependent Regulator Of
Chromatin Subfamily C Member 1
Length = 79
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 126 NWAEIAEHVGTKTKELCIEHYTNVYMNSPFF 156
+W +++EHVG++T++ CI H+ + + P+
Sbjct: 39 DWNKVSEHVGSRTQDECILHFLRLPIEDPYL 69
>pdb|1IWH|A Chain A, Crystal Structure Of Horse
Carbonmonoxyhemoglobin-Bezafibrate Complex At 1.55a
Resolution: A Novel Allosteric Binding Site In R-State
Hemoglobin
pdb|2D5X|A Chain A, Crystal Structure Of Carbonmonoxy Horse Hemoglobin
Complexed With L35
Length = 141
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH------VVGKNRKELLAMAKGHI 180
W+++ H G E + +FP D+SH GK + L +A GH+
Sbjct: 14 WSKVGGHAGEYGAEALERMFLGFPTTKTYFPHFDLSHGSAQVKAHGKKVGDALTLAVGHL 73
Query: 181 DDKKG 185
DD G
Sbjct: 74 DDLPG 78
>pdb|2MHB|A Chain A, The Structure Of Horse Methaemoglobin At 2.0 Angstroms
Resolution
pdb|1G0B|A Chain A, Carbonmonoxy Liganded Equine Hemoglobin Ph 8.5
pdb|1NS6|A Chain A, The 2.1a Structure Of Horse (Alpha HemichromeBETA MET)
Hemoglobin At Ph 5.4
pdb|1NS9|A Chain A, The 1.6a Structure Of Horse Methemoglobin At Ph 7.1
pdb|1Y8H|A Chain A, Horse Methemoglobin Low Salt, Ph 7.0
pdb|1Y8H|C Chain C, Horse Methemoglobin Low Salt, Ph 7.0
pdb|1Y8I|A Chain A, Horse Methemoglobin Low Salt, Ph 7.0 (98% Relative
Humidity)
pdb|1Y8I|C Chain C, Horse Methemoglobin Low Salt, Ph 7.0 (98% Relative
Humidity)
pdb|1Y8K|A Chain A, Horse Methemoglobin Low Salt, Ph 7.0 (88% Relative
Humidity)
pdb|1Y8K|C Chain C, Horse Methemoglobin Low Salt, Ph 7.0 (88% Relative
Humidity)
pdb|2ZLT|A Chain A, Horse Methemoglobin High Salt, Ph 7.0
pdb|2ZLU|A Chain A, Horse Methemoglobin High Salt, Ph 7.0 (88% Relative
Humidity)
pdb|2ZLV|A Chain A, Horse Methemoglobin High Salt, Ph 7.0 (79% Relative
Humidity)
pdb|2ZLW|A Chain A, Horse Methemoglobin High Salt, Ph 7.0 (75% Relative
Humidity)
pdb|2ZLW|C Chain C, Horse Methemoglobin High Salt, Ph 7.0 (75% Relative
Humidity)
pdb|2ZLX|A Chain A, Horse Methemoglobin High Salt, Ph 7.0 (66% Relative
Humidity)
pdb|2ZLX|C Chain C, Horse Methemoglobin High Salt, Ph 7.0 (66% Relative
Humidity)
Length = 141
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH------VVGKNRKELLAMAKGHI 180
W+++ H G E + +FP D+SH GK + L +A GH+
Sbjct: 14 WSKVGGHAGEYGAEALERMFLGFPTTKTYFPHFDLSHGSAQVKAHGKKVGDALTLAVGHL 73
Query: 181 DDKKG 185
DD G
Sbjct: 74 DDLPG 78
>pdb|2L26|A Chain A, Rv0899 From Mycobacterium Tuberculosis Contains Two
Separated Domains
Length = 284
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 222 ADPQTERSSKGKKPVTSGNDGPSLVELSGYNSKRQEFDPEYDNDAEQLLAEMEFKDADSE 281
AD Q+ ++ P+ GNDG SL+ R + DA + + D
Sbjct: 159 ADLQSAINAVTGGPIAFGNDGASLIPADYEILNRVADKLKACPDARVTI--NGYTDNTGS 216
Query: 282 EERDIKLRVLR--IYSKRLDERKRRKDFILERNLLYPNPFEKDLSPEERELCRRYDVFMR 339
E +I L R I + L R D I L NP + +PE R RR ++ +
Sbjct: 217 EGINIPLSAQRAKIVADYLVARGVAGDHIATVGLGSVNPIASNATPEGRAKNRRVEIVVN 276
Query: 340 F 340
Sbjct: 277 L 277
>pdb|1IBE|A Chain A, Deoxy-Haemoglobin Trapped In The High-Affinity (R) State
Length = 141
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH------VVGKNRKELLAMAKGHI 180
W+++ H G E + +FP D+SH GK + L +A GH+
Sbjct: 14 WSKVGGHAGEFGAEALERMFLGFPTTKTYFPHFDLSHGSAQVKAHGKKVGDALTLAVGHL 73
Query: 181 DDKKG 185
DD G
Sbjct: 74 DDLPG 78
>pdb|2DHB|A Chain A, Three Dimensional Fourier Synthesis Of Horse
Deoxyhaemoglobin At 2.8 Angstroms Resolution
Length = 141
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH------VVGKNRKELLAMAKGHI 180
W+++ H G E + +FP D+SH GK + L +A GH+
Sbjct: 14 WSKVGGHAGEYGAEALERMFLGFPTTKTYFPHFDLSHGSAQVKAHGKKVADGLTLAVGHL 73
Query: 181 DDKKG 185
DD G
Sbjct: 74 DDLPG 78
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 107 WNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148
W +++ ++E ++ YG W++IA+H+ + + C E + N
Sbjct: 30 WTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71
>pdb|3VRE|A Chain A, The Crystal Structure Of Hemoglobin From Woolly Mammoth In
The Deoxy Form
pdb|3VRE|C Chain C, The Crystal Structure Of Hemoglobin From Woolly Mammoth In
The Deoxy Form
pdb|3VRF|A Chain A, The Crystal Structure Of Hemoglobin From Woolly Mammoth In
The Carbonmonoxy Forms
pdb|3VRG|A Chain A, The Crystal Structure Of Hemoglobin From Woolly Mammoth In
The Met Form
Length = 141
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 125 GNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH----VVGKNRK--ELLAMAKG 178
W+++ +H E + + +FP D+SH V G +K E L A G
Sbjct: 12 ATWSKVGDHASDYVAEALERMFFSFPTTKTYFPHFDLSHGSGQVKGHGKKVGEALTQAVG 71
Query: 179 HIDD 182
H+DD
Sbjct: 72 HLDD 75
>pdb|2W72|A Chain A, Deoxygenated Structure Of A Distal Site Hemoglobin Mutant
Plus Xe
Length = 141
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSP----FFPLPDMSH----VVGKNRK--ELLAMA 176
W ++ H G E E Y ++++ P +FP D+SH V G+ +K + L A
Sbjct: 14 WGKVGAHAG----EYGAEAYERMFLSFPTTKTYFPHFDLSHGSAQVKGQGKKVADALTNA 69
Query: 177 KGHIDD 182
H+DD
Sbjct: 70 VAHVDD 75
>pdb|1QI8|A Chain A, Deoxygenated Structure Of A Distal Pocket Hemoglobin
Mutant
pdb|1QI8|C Chain C, Deoxygenated Structure Of A Distal Pocket Hemoglobin
Mutant
pdb|1J7S|A Chain A, Crystal Structure Of Deoxy Hbalphayq, A Mutant Of Hba
pdb|1J7S|C Chain C, Crystal Structure Of Deoxy Hbalphayq, A Mutant Of Hba
pdb|1J7Y|A Chain A, Crystal Structure Of Partially Ligated Mutant Of Hba
pdb|1J7Y|C Chain C, Crystal Structure Of Partially Ligated Mutant Of Hba
pdb|2W72|C Chain C, Deoxygenated Structure Of A Distal Site Hemoglobin Mutant
Plus Xe
Length = 141
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 14/66 (21%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSP----FFPLPDMSH----VVGKNRK--ELLAMA 176
W ++ H G E E Y ++++ P +FP D+SH V G+ +K + L A
Sbjct: 14 WGKVGAHAG----EYGAEAYERMFLSFPTTKTYFPHFDLSHGSAQVKGQGKKVADALTNA 69
Query: 177 KGHIDD 182
H+DD
Sbjct: 70 VAHVDD 75
>pdb|2RAO|A Chain A, X Ray Crystal Structure Of Rabbit Hemoglobin (oxy Form) At
2.0 Angstrom Resolution
pdb|2RAO|C Chain C, X Ray Crystal Structure Of Rabbit Hemoglobin (oxy Form) At
2.0 Angstrom Resolution
Length = 141
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH------VVGKNRKELLAMAKGHI 180
W +I H G E + +FP D +H GK E L A GH+
Sbjct: 14 WEKIGSHGGEYGAEAVERMFLGFPTTKTYFPHFDFTHGSEQIKAHGKKVSEALTKAVGHL 73
Query: 181 DDKKG 185
DD G
Sbjct: 74 DDLPG 78
>pdb|3LQD|A Chain A, Crystal Structure Determination Of Lepus Europaeus 2.8 A
Resolution
pdb|3LQD|C Chain C, Crystal Structure Determination Of Lepus Europaeus 2.8 A
Resolution
Length = 141
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH------VVGKNRKELLAMAKGHI 180
W +I H G E + +FP D +H GK E L A GH+
Sbjct: 14 WEKIGSHGGEYGAEAVERMFLGFPTTKTYFPHFDFTHGSEQIKAHGKKVSEALTKAVGHL 73
Query: 181 DDKKG 185
DD G
Sbjct: 74 DDLPG 78
>pdb|3MT5|A Chain A, Crystal Structure Of The Human Bk Gating Apparatus
Length = 726
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 39 AGEGKRALYHCNYCNKDITGKIRIKCAVC 67
A E KRA ++C C+ DIT RIK C
Sbjct: 263 AKEVKRAFFYCKACHDDITDPKRIKKCGC 291
>pdb|3HRW|A Chain A, Crystal Structure Of Hemoglobin From Mouse (Mus
Musculus)at 2.8
pdb|3HRW|C Chain C, Crystal Structure Of Hemoglobin From Mouse (Mus
Musculus)at 2.8
Length = 141
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH----VVGKNRK--ELLAMAKGHI 180
W +I H E + + +FP D+SH V G +K + LA A GH+
Sbjct: 14 WGKIGGHGAEYGAEALERMFASFPTTKTYFPHFDVSHGSAQVKGHGKKVADALASAAGHL 73
Query: 181 DDKKG 185
DD G
Sbjct: 74 DDLPG 78
>pdb|3U6N|A Chain A, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|B Chain B, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|C Chain C, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|D Chain D, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|E Chain E, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|F Chain F, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|G Chain G, Open Structure Of The Bk Channel Gating Ring
pdb|3U6N|H Chain H, Open Structure Of The Bk Channel Gating Ring
Length = 696
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 39 AGEGKRALYHCNYCNKDITGKIRIKCAVC 67
A E KRA ++C C+ DIT RIK C
Sbjct: 267 AKEVKRAFFYCKACHDDITDPKRIKKCGC 295
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148
LI W +++ ++E ++ YG W+ IA+H+ + + C E + N
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|1JIG|A Chain A, Dlp-2 From Bacillus Anthracis
pdb|1JIG|B Chain B, Dlp-2 From Bacillus Anthracis
pdb|1JIG|C Chain C, Dlp-2 From Bacillus Anthracis
pdb|1JIG|D Chain D, Dlp-2 From Bacillus Anthracis
Length = 146
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 6/42 (14%)
Query: 342 SKEDHEDLLQTVISEHRTLKRIQDLKE----ARAAGCRTSAE 379
SKE E+++QT+++++ L IQ+LKE A AG TSA+
Sbjct: 86 SKESAEEMVQTLVNDYSAL--IQELKEGMEVAGEAGDATSAD 125
>pdb|4B4C|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Chd1
Length = 211
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 106 DWNADDEILLLEGIEMYGLGNWAEI 130
DW +D+ LL GI YG G+W I
Sbjct: 136 DWGKEDDSNLLIGIYEYGYGSWEMI 160
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148
LI W +++ L++ ++ YG W+ IA+H+ + + C E + N
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47
>pdb|3QJB|A Chain A, Human Hemoglobin A Mutant Alpha H58l Carbonmonoxy-Form
pdb|3QJD|A Chain A, Human Hemoglobin A Mutant Alpha H58l Deoxy-Form
pdb|3QJD|C Chain C, Human Hemoglobin A Mutant Alpha H58l Deoxy-Form
Length = 141
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH------VVGKNRKELLAMAKGHI 180
W ++ H G E + + +FP D+SH +GK + L A H+
Sbjct: 14 WGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGLGKKVADALTNAVAHV 73
Query: 181 DD 182
DD
Sbjct: 74 DD 75
>pdb|1S0H|A Chain A, Structure Determination Of Haemoglobin From Donkey(equus
Asinus) At 3.0 Angstrom Resolution
Length = 141
Score = 28.5 bits (62), Expect = 8.9, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 127 WAEIAEHVGTKTKELCIEHYTNVYMNSPFFPLPDMSH------VVGKNRKELLAMAKGHI 180
W+++ + G E + +FP D+SH GK + L +A GH+
Sbjct: 14 WSKVGGNAGEFGAEALERMFLGFPTTKTYFPHFDLSHGSAQVKAHGKKVGDALTLAVGHL 73
Query: 181 DDKKG 185
DD G
Sbjct: 74 DDLPG 78
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 107 WNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148
W +++ ++E ++ YG W IA+H+ + + C E + N
Sbjct: 10 WTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHN 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,320,180
Number of Sequences: 62578
Number of extensions: 644104
Number of successful extensions: 1456
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1424
Number of HSP's gapped (non-prelim): 47
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)