Query 009958
Match_columns 521
No_of_seqs 217 out of 947
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuj_A Transcriptional adaptor 99.9 1.1E-26 3.6E-31 201.7 12.4 86 436-521 22-107 (108)
2 2aqe_A Transcriptional adaptor 99.9 3.5E-26 1.2E-30 192.9 10.3 83 439-521 7-89 (90)
3 2elj_A Transcriptional adapter 99.9 8.8E-26 3E-30 189.7 10.1 82 438-519 5-88 (88)
4 2elk_A SPCC24B10.08C protein; 99.6 2.4E-15 8.4E-20 116.6 7.5 55 98-152 3-58 (58)
5 2yus_A SWI/SNF-related matrix- 99.5 1.4E-13 4.9E-18 113.1 8.3 55 102-157 16-70 (79)
6 1x41_A Transcriptional adaptor 99.4 2.4E-13 8.2E-18 106.0 7.2 56 99-154 3-58 (60)
7 2e5r_A Dystrobrevin alpha; ZZ 99.3 1.1E-12 3.9E-17 103.2 6.0 58 39-97 4-62 (63)
8 2fc7_A ZZZ3 protein; structure 99.1 5.3E-11 1.8E-15 98.4 6.0 64 37-101 11-79 (82)
9 1guu_A C-MYB, MYB proto-oncoge 99.1 8.6E-11 3E-15 88.6 5.8 46 104-149 3-48 (52)
10 1gvd_A MYB proto-oncogene prot 99.1 1E-10 3.5E-15 88.3 5.7 46 104-149 3-48 (52)
11 1w0t_A Telomeric repeat bindin 99.1 2E-10 6.7E-15 87.1 6.1 46 104-149 2-49 (53)
12 2d9a_A B-MYB, MYB-related prot 99.0 2.8E-10 9.7E-15 88.3 6.8 48 102-149 6-53 (60)
13 2yum_A ZZZ3 protein, zinc fing 99.0 2.6E-10 8.8E-15 92.5 6.1 52 102-153 6-62 (75)
14 2dim_A Cell division cycle 5-l 99.0 7.2E-10 2.5E-14 88.7 7.2 48 102-149 7-54 (70)
15 3sjm_A Telomeric repeat-bindin 99.0 7.9E-10 2.7E-14 87.2 6.1 46 104-149 11-58 (64)
16 2dip_A Zinc finger SWIM domain 98.9 2.6E-10 8.8E-15 97.3 3.3 57 45-112 30-87 (98)
17 1ity_A TRF1; helix-turn-helix, 98.9 9.8E-10 3.4E-14 87.7 6.0 48 103-150 9-58 (69)
18 2cu7_A KIAA1915 protein; nucle 98.9 1.5E-09 5E-14 87.5 7.0 49 101-150 6-54 (72)
19 2cjj_A Radialis; plant develop 98.8 2E-09 6.7E-14 91.0 4.7 59 104-162 8-74 (93)
20 2cqr_A RSGI RUH-043, DNAJ homo 98.8 1.6E-09 5.6E-14 87.5 3.8 51 102-153 16-69 (73)
21 1wgx_A KIAA1903 protein; MYB D 98.8 6E-09 2E-13 84.0 5.2 46 104-149 8-56 (73)
22 1tot_A CREB-binding protein; z 98.8 3.1E-09 1.1E-13 80.3 2.9 46 43-96 3-48 (52)
23 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.6E-08 5.6E-13 87.3 6.0 46 105-150 2-47 (107)
24 2din_A Cell division cycle 5-l 98.7 2.1E-08 7.2E-13 79.2 6.0 47 101-149 6-52 (66)
25 2ltp_A Nuclear receptor corepr 98.1 2.2E-09 7.5E-14 90.1 0.0 50 99-149 11-60 (89)
26 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.8E-08 6.3E-13 86.5 5.7 47 103-149 3-49 (105)
27 2ckx_A NGTRF1, telomere bindin 98.7 2.2E-08 7.6E-13 82.8 5.8 46 105-150 1-50 (83)
28 3zqc_A MYB3; transcription-DNA 98.6 2.5E-08 8.6E-13 89.2 4.3 47 104-150 2-48 (131)
29 1h8a_C AMV V-MYB, MYB transfor 98.6 6.2E-08 2.1E-12 86.2 6.8 49 102-150 25-73 (128)
30 2llk_A Cyclin-D-binding MYB-li 98.6 8.7E-08 3E-12 77.4 6.3 48 99-148 18-65 (73)
31 2eqr_A N-COR1, N-COR, nuclear 98.5 1.2E-07 4.2E-12 73.8 5.8 44 104-148 12-55 (61)
32 3osg_A MYB21; transcription-DN 98.5 1.2E-07 4.2E-12 84.2 6.3 48 102-150 9-56 (126)
33 2k9n_A MYB24; R2R3 domain, DNA 98.4 3E-07 1E-11 79.4 6.8 47 102-149 51-97 (107)
34 1gv2_A C-MYB, MYB proto-oncoge 98.4 2.4E-07 8.2E-12 79.5 6.1 47 102-149 54-100 (105)
35 2roh_A RTBP1, telomere binding 98.4 3.7E-07 1.3E-11 80.6 6.2 47 104-150 31-81 (122)
36 3osg_A MYB21; transcription-DN 98.4 3.7E-07 1.3E-11 81.1 6.0 47 102-149 60-106 (126)
37 2aje_A Telomere repeat-binding 98.4 3.1E-07 1.1E-11 79.1 5.1 50 103-152 12-65 (105)
38 2iw5_B Protein corest, REST co 98.3 5.7E-07 1.9E-11 86.6 6.9 50 100-150 129-178 (235)
39 3zqc_A MYB3; transcription-DNA 98.3 4.7E-07 1.6E-11 80.9 5.8 48 102-150 52-99 (131)
40 1h8a_C AMV V-MYB, MYB transfor 98.3 7.6E-07 2.6E-11 79.1 6.3 47 102-149 77-123 (128)
41 2juh_A Telomere binding protei 98.3 4.9E-07 1.7E-11 79.7 4.9 48 103-150 16-67 (121)
42 1h89_C C-MYB, MYB proto-oncoge 98.3 7.9E-07 2.7E-11 81.9 6.5 48 102-149 56-103 (159)
43 2cqq_A RSGI RUH-037, DNAJ homo 98.3 1.2E-06 4.1E-11 70.5 6.6 45 104-149 8-55 (72)
44 1h89_C C-MYB, MYB proto-oncoge 98.2 1.5E-07 5.1E-12 86.8 0.5 47 104-150 6-52 (159)
45 2yqk_A Arginine-glutamic acid 98.0 9.7E-06 3.3E-10 63.5 6.0 45 102-147 7-52 (63)
46 2xag_B REST corepressor 1; ami 97.9 8.9E-06 3E-10 86.8 6.2 47 103-150 379-425 (482)
47 4eef_G F-HB80.4, designed hema 97.9 2E-06 6.7E-11 68.9 0.8 44 104-147 20-66 (74)
48 1x58_A Hypothetical protein 49 97.8 3.1E-05 1.1E-09 60.2 5.5 46 103-149 7-55 (62)
49 2crg_A Metastasis associated p 97.7 3.3E-05 1.1E-09 61.7 5.3 44 104-148 8-52 (70)
50 4a69_C Nuclear receptor corepr 97.6 5.9E-05 2E-09 63.7 5.4 44 104-148 43-86 (94)
51 1ign_A Protein (RAP1); RAP1,ye 97.6 3.9E-05 1.3E-09 74.6 4.1 48 103-150 7-59 (246)
52 1fex_A TRF2-interacting telome 96.2 0.0034 1.2E-07 48.3 3.7 46 104-149 2-56 (59)
53 3hm5_A DNA methyltransferase 1 96.2 0.007 2.4E-07 50.8 5.7 45 104-149 30-79 (93)
54 2xb0_X Chromo domain-containin 96.1 0.0041 1.4E-07 62.0 4.4 32 101-132 165-196 (270)
55 1ug2_A 2610100B20RIK gene prod 95.9 0.012 4E-07 48.8 5.6 44 106-149 35-80 (95)
56 2fq3_A Transcription regulator 95.7 0.029 9.8E-07 48.0 7.7 69 452-520 22-98 (104)
57 4b4c_A Chromodomain-helicase-D 95.6 0.0088 3E-07 56.9 4.6 31 103-133 133-163 (211)
58 1ofc_X ISWI protein; nuclear p 95.3 0.013 4.4E-07 59.2 4.6 48 105-153 111-158 (304)
59 2ebi_A DNA binding protein GT- 95.1 0.011 3.7E-07 48.6 2.9 45 105-149 5-62 (86)
60 1irz_A ARR10-B; helix-turn-hel 94.4 0.064 2.2E-06 41.8 5.5 48 104-151 7-58 (64)
61 2dce_A KIAA1915 protein; swirm 94.0 0.066 2.3E-06 46.3 5.3 69 452-520 24-101 (111)
62 4iej_A DNA methyltransferase 1 93.8 0.093 3.2E-06 43.9 5.7 45 104-149 30-79 (93)
63 2lr8_A CAsp8-associated protei 92.7 0.012 4.2E-07 46.2 0.0 44 105-149 15-60 (70)
64 2xag_B REST corepressor 1; ami 92.6 0.022 7.4E-07 60.9 0.0 45 103-148 188-232 (482)
65 1ofc_X ISWI protein; nuclear p 90.9 0.17 5.9E-06 51.0 4.4 46 104-149 212-272 (304)
66 3ny3_A E3 ubiquitin-protein li 90.5 0.19 6.4E-06 40.4 3.4 42 51-97 6-51 (75)
67 2y9y_A Imitation switch protei 88.6 0.33 1.1E-05 50.2 4.4 59 105-165 124-183 (374)
68 1v5n_A PDI-like hypothetical p 87.3 0.31 1.1E-05 40.3 2.7 32 46-79 47-78 (89)
69 4b4c_A Chromodomain-helicase-D 86.8 0.55 1.9E-05 44.3 4.5 43 105-147 8-54 (211)
70 3nis_A E3 ubiquitin-protein li 86.2 0.81 2.8E-05 37.3 4.5 43 50-97 9-55 (82)
71 2y9y_A Imitation switch protei 80.2 1.7 5.9E-05 44.9 5.2 45 104-148 228-287 (374)
72 1weo_A Cellulose synthase, cat 72.1 1.7 5.8E-05 35.9 2.0 35 45-80 15-53 (93)
73 2d8v_A Zinc finger FYVE domain 64.6 4.8 0.00016 31.4 3.1 33 45-81 7-39 (67)
74 1z60_A TFIIH basal transcripti 63.8 3.2 0.00011 31.7 1.9 30 48-78 17-46 (59)
75 4fx0_A Probable transcriptiona 56.6 13 0.00044 32.5 5.0 58 463-520 26-83 (148)
76 3kp7_A Transcriptional regulat 52.4 21 0.00073 30.5 5.7 56 459-520 27-82 (151)
77 2ve8_A FTSK, DNA translocase F 52.4 21 0.0007 28.4 4.9 45 473-521 12-56 (73)
78 2bv6_A MGRA, HTH-type transcri 50.7 22 0.00076 29.9 5.4 56 460-520 27-82 (142)
79 1ign_A Protein (RAP1); RAP1,ye 50.3 20 0.00069 34.8 5.4 25 126-150 173-197 (246)
80 2d1h_A ST1889, 109AA long hypo 48.9 36 0.0012 26.9 6.2 58 459-520 10-67 (109)
81 2fa5_A Transcriptional regulat 48.3 39 0.0013 29.0 6.8 57 459-520 38-94 (162)
82 3k0l_A Repressor protein; heli 47.0 39 0.0013 29.3 6.6 60 456-520 32-91 (162)
83 3g3z_A NMB1585, transcriptiona 46.9 28 0.00095 29.5 5.5 56 460-520 21-76 (145)
84 2htj_A P fimbrial regulatory p 46.8 18 0.0006 28.2 3.8 43 478-520 3-45 (81)
85 2cs3_A Protein C14ORF4, MY039 46.1 21 0.00073 28.9 4.1 36 44-79 13-48 (93)
86 3ech_A MEXR, multidrug resista 44.8 41 0.0014 28.3 6.2 56 460-520 25-82 (142)
87 2frh_A SARA, staphylococcal ac 44.2 30 0.001 29.1 5.2 58 460-520 27-84 (127)
88 2fbi_A Probable transcriptiona 44.1 31 0.0011 28.8 5.3 55 461-520 27-81 (142)
89 3bro_A Transcriptional regulat 42.3 46 0.0016 27.7 6.1 57 460-520 24-81 (141)
90 1lj9_A Transcriptional regulat 41.8 30 0.001 29.1 4.8 56 460-520 19-74 (144)
91 4hbl_A Transcriptional regulat 41.8 34 0.0012 29.2 5.3 56 460-520 31-86 (149)
92 3boq_A Transcriptional regulat 41.3 38 0.0013 29.1 5.5 58 459-520 36-93 (160)
93 1wg2_A Zinc finger (AN1-like) 40.7 66 0.0023 24.8 6.0 50 40-96 9-58 (64)
94 2fbh_A Transcriptional regulat 40.7 38 0.0013 28.3 5.3 57 460-520 27-83 (146)
95 1sfx_A Conserved hypothetical 40.7 46 0.0016 26.2 5.6 55 461-520 11-65 (109)
96 3fm5_A Transcriptional regulat 40.6 38 0.0013 28.8 5.4 60 457-520 26-85 (150)
97 3jw4_A Transcriptional regulat 40.4 42 0.0014 28.5 5.6 64 454-520 25-88 (148)
98 3bpv_A Transcriptional regulat 40.1 38 0.0013 28.1 5.2 55 461-520 20-74 (138)
99 3bja_A Transcriptional regulat 40.0 36 0.0012 28.2 5.1 53 463-520 26-78 (139)
100 3oop_A LIN2960 protein; protei 39.8 31 0.001 29.1 4.6 53 463-520 30-82 (143)
101 2dk5_A DNA-directed RNA polyme 39.7 40 0.0014 27.5 5.0 52 466-520 16-67 (91)
102 3bj6_A Transcriptional regulat 38.8 50 0.0017 27.9 5.9 56 460-520 30-85 (152)
103 2x4h_A Hypothetical protein SS 38.6 49 0.0017 27.9 5.7 54 466-520 9-62 (139)
104 2qww_A Transcriptional regulat 38.4 51 0.0017 28.0 5.9 56 460-520 31-86 (154)
105 3s2w_A Transcriptional regulat 37.9 39 0.0013 29.1 5.1 59 457-520 37-95 (159)
106 2gxg_A 146AA long hypothetical 37.6 50 0.0017 27.6 5.6 56 459-520 26-81 (146)
107 1bja_A Transcription regulator 36.9 40 0.0014 28.0 4.5 53 462-519 8-61 (95)
108 3hsr_A HTH-type transcriptiona 35.7 29 0.00099 29.3 3.7 56 460-520 26-81 (140)
109 3e7l_A Transcriptional regulat 35.3 32 0.0011 25.6 3.5 26 110-136 19-44 (63)
110 3e6m_A MARR family transcripti 34.7 61 0.0021 27.9 5.8 61 455-520 38-98 (161)
111 2rdp_A Putative transcriptiona 34.6 44 0.0015 28.2 4.8 56 460-520 32-87 (150)
112 3cdh_A Transcriptional regulat 34.6 61 0.0021 27.6 5.8 56 460-520 33-88 (155)
113 1tbx_A ORF F-93, hypothetical 34.1 49 0.0017 26.2 4.7 51 465-520 3-57 (99)
114 2pex_A Transcriptional regulat 34.0 42 0.0014 28.6 4.6 57 459-520 36-92 (153)
115 3cjn_A Transcriptional regulat 33.8 56 0.0019 28.1 5.4 56 460-520 42-97 (162)
116 1wfh_A Zinc finger (AN1-like) 33.8 94 0.0032 23.9 5.8 47 43-96 12-58 (64)
117 4b8x_A SCO5413, possible MARR- 33.8 33 0.0011 29.6 3.9 56 462-520 27-82 (147)
118 1jgs_A Multiple antibiotic res 33.1 50 0.0017 27.4 4.8 55 461-520 25-79 (138)
119 1wfl_A Zinc finger protein 216 32.6 91 0.0031 24.7 5.7 47 43-96 22-68 (74)
120 2k02_A Ferrous iron transport 32.6 52 0.0018 26.8 4.5 39 482-520 8-47 (87)
121 3nrv_A Putative transcriptiona 32.4 64 0.0022 27.1 5.5 51 465-520 35-85 (148)
122 2vn2_A DNAD, chromosome replic 32.1 81 0.0028 26.8 6.1 57 463-520 25-82 (128)
123 2li6_A SWI/SNF chromatin-remod 32.1 43 0.0015 28.4 4.2 37 113-149 52-95 (116)
124 2a61_A Transcriptional regulat 31.8 54 0.0019 27.4 4.9 54 462-520 25-78 (145)
125 3dpt_A ROCO, RAB family protei 31.8 44 0.0015 33.7 4.9 54 466-519 11-68 (332)
126 2zc2_A DNAD-like replication p 31.7 18 0.0006 28.3 1.5 18 364-381 60-77 (78)
127 3u2r_A Regulatory protein MARR 31.7 62 0.0021 28.1 5.4 62 455-520 31-93 (168)
128 1s3j_A YUSO protein; structura 31.0 56 0.0019 27.7 4.9 56 460-520 27-82 (155)
129 1ku9_A Hypothetical protein MJ 30.9 80 0.0027 26.3 5.8 57 460-520 16-72 (152)
130 2xvc_A ESCRT-III, SSO0910; cel 30.9 56 0.0019 24.7 4.0 41 480-520 15-56 (59)
131 1xn7_A Hypothetical protein YH 30.0 56 0.0019 25.8 4.2 38 482-519 8-46 (78)
132 3eco_A MEPR; mutlidrug efflux 29.9 75 0.0026 26.4 5.4 57 460-520 21-78 (139)
133 4aik_A Transcriptional regulat 29.6 82 0.0028 27.2 5.8 53 464-520 25-77 (151)
134 1z91_A Organic hydroperoxide r 29.6 39 0.0013 28.5 3.5 55 461-520 31-85 (147)
135 3r0a_A Putative transcriptiona 29.3 1.1E+02 0.0036 25.8 6.2 58 459-520 15-73 (123)
136 1wfp_A Zinc finger (AN1-like) 28.5 1.1E+02 0.0036 24.3 5.5 49 41-96 20-68 (74)
137 2obp_A Putative DNA-binding pr 28.4 71 0.0024 26.4 4.7 55 466-520 12-67 (96)
138 3f3x_A Transcriptional regulat 28.2 93 0.0032 26.0 5.8 54 461-520 27-81 (144)
139 2eth_A Transcriptional regulat 28.1 54 0.0019 28.0 4.3 53 463-520 37-89 (154)
140 1p4x_A Staphylococcal accessor 27.8 56 0.0019 31.4 4.7 57 460-520 24-81 (250)
141 3bdd_A Regulatory protein MARR 27.7 1E+02 0.0035 25.4 5.9 52 464-520 25-76 (142)
142 3deu_A Transcriptional regulat 26.7 68 0.0023 28.1 4.7 59 458-520 41-99 (166)
143 2k4b_A Transcriptional regulat 25.0 48 0.0017 27.3 3.1 51 465-520 30-84 (99)
144 2nnn_A Probable transcriptiona 24.5 86 0.003 25.8 4.8 49 467-520 35-83 (140)
145 2yqq_A Zinc finger HIT domain- 24.5 65 0.0022 24.1 3.4 36 42-81 8-43 (56)
146 2jne_A Hypothetical protein YF 24.4 28 0.00096 29.1 1.5 32 46-78 32-69 (101)
147 2k6x_A Sigma-A, RNA polymerase 24.3 1.3E+02 0.0043 23.2 5.3 42 477-518 11-57 (72)
148 2pjp_A Selenocysteine-specific 24.2 58 0.002 27.4 3.6 52 468-519 59-110 (121)
149 2elr_A Zinc finger protein 406 24.1 45 0.0015 20.4 2.2 16 42-57 5-20 (36)
150 3tgn_A ADC operon repressor AD 24.1 90 0.0031 26.0 4.9 49 466-520 34-82 (146)
151 1p4x_A Staphylococcal accessor 23.5 1E+02 0.0034 29.6 5.6 57 460-520 148-205 (250)
152 2i5u_A DNAD domain protein; st 23.2 30 0.001 27.5 1.5 18 364-381 65-82 (83)
153 2jrz_A Histone demethylase jar 23.0 1.2E+02 0.004 25.7 5.3 37 113-149 43-90 (117)
154 2fxa_A Protease production reg 23.0 59 0.002 29.9 3.7 55 461-520 39-93 (207)
155 2els_A Zinc finger protein 406 23.0 36 0.0012 21.0 1.6 15 43-57 6-20 (36)
156 1p6r_A Penicillinase repressor 22.8 1E+02 0.0035 23.5 4.6 49 467-520 6-58 (82)
157 2xb0_X Chromo domain-containin 22.7 1.2E+02 0.0041 29.7 6.0 46 104-149 3-52 (270)
158 2jxj_A Histone demethylase jar 22.5 88 0.003 25.3 4.2 37 113-149 39-86 (96)
159 1vz0_A PARB, chromosome partit 22.4 1.9E+02 0.0064 27.3 7.2 59 460-518 138-201 (230)
160 1twf_L ABC10-alpha, DNA-direct 22.2 28 0.00095 27.3 1.0 14 43-56 25-38 (70)
161 2lm1_A Lysine-specific demethy 21.8 1.2E+02 0.0041 25.0 5.1 37 113-149 47-94 (107)
162 2nyx_A Probable transcriptiona 21.7 1.1E+02 0.0039 26.4 5.2 50 466-520 41-90 (168)
163 1sd4_A Penicillinase repressor 21.5 97 0.0033 25.4 4.5 50 466-520 6-59 (126)
164 1r7j_A Conserved hypothetical 21.3 95 0.0032 25.1 4.2 36 484-520 16-51 (95)
165 2qvo_A Uncharacterized protein 21.2 50 0.0017 26.3 2.4 56 463-519 5-60 (95)
166 2cxy_A BAF250B subunit, HBAF25 20.9 1.3E+02 0.0043 25.8 5.1 37 113-149 54-101 (125)
167 2fu4_A Ferric uptake regulatio 20.2 1.2E+02 0.0039 23.2 4.4 33 488-520 32-69 (83)
No 1
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=99.94 E-value=1.1e-26 Score=201.75 Aligned_cols=86 Identities=29% Similarity=0.478 Sum_probs=82.3
Q ss_pred CCCCCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHH
Q 009958 436 ASSSHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVK 515 (521)
Q Consensus 436 ~~~~~~~~l~i~~~pg~~lLs~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~ 515 (521)
..++.+.+|||.++||++|||++|++||+++||+|.+||.+|++||+|+.++|.++++||+.+|+||++|+++|||||++
T Consensus 22 ~~r~~~~~ldi~~~pg~~LLs~~E~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kID~~K~~rIydff~~ 101 (108)
T 2cuj_A 22 SGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIR 101 (108)
T ss_dssp CCCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCccCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 009958 516 KGLAPP 521 (521)
Q Consensus 516 ~Gwi~~ 521 (521)
+|||+.
T Consensus 102 ~GWi~~ 107 (108)
T 2cuj_A 102 EGYITK 107 (108)
T ss_dssp TTSSCC
T ss_pred cCCCCC
Confidence 999974
No 2
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=99.93 E-value=3.5e-26 Score=192.94 Aligned_cols=83 Identities=30% Similarity=0.490 Sum_probs=79.5
Q ss_pred CCCCcccccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCC
Q 009958 439 SHVNDLYIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGL 518 (521)
Q Consensus 439 ~~~~~l~i~~~pg~~lLs~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gw 518 (521)
....+|||+++||++|||++|++||+++||+|.+||.+|++||+|+.++|.+++++|+.+|+||++|+++|||||+++||
T Consensus 7 ~~~~~ldi~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~li~E~~~~g~l~k~da~~~~kiD~~K~~~iydf~~~~Gw 86 (90)
T 2aqe_A 7 RSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGY 86 (90)
T ss_dssp CSSCCSSSSSSSSTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSSSSSHHHHHHHHHHHHTTS
T ss_pred CCCCCCCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence 44578999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CCC
Q 009958 519 APP 521 (521)
Q Consensus 519 i~~ 521 (521)
|+.
T Consensus 87 i~~ 89 (90)
T 2aqe_A 87 ITK 89 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 974
No 3
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.8e-26 Score=189.72 Aligned_cols=82 Identities=32% Similarity=0.545 Sum_probs=77.8
Q ss_pred CCCCCcc-cccCCCccCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCchhHHHHHHHHHH
Q 009958 438 SSHVNDL-YIMGFNETQLLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVK 515 (521)
Q Consensus 438 ~~~~~~l-~i~~~pg~~lLs~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~-~G~lkk~~a~~l~kiD~~k~~~Iydfl~~ 515 (521)
++.+.|+ ||+++||++|||++|++||+++||+|.+||.+|++||+|+++ +|.++++||+.+|+||++|+++|||||++
T Consensus 5 ~~~~~~l~di~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~Li~E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~~ 84 (88)
T 2elj_A 5 SSGNMTISDIQHAPDYALLSNDEQQLCIQLKILPKPYLVLKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQS 84 (88)
T ss_dssp CCSCCCSHHHHTSTTCSSSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCccccccCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3456889 999999999999999999999999999999999999999997 56699999999999999999999999999
Q ss_pred CCCC
Q 009958 516 KGLA 519 (521)
Q Consensus 516 ~Gwi 519 (521)
+|||
T Consensus 85 ~Gwi 88 (88)
T 2elj_A 85 QNWM 88 (88)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9997
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=2.4e-15 Score=116.57 Aligned_cols=55 Identities=44% Similarity=0.854 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhC-CCCHHHHHHHHHhhccC
Q 009958 98 LSFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMN 152 (521)
Q Consensus 98 ~~~~~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg-tkt~~ec~~hy~~~yi~ 152 (521)
.+||++...||++||.+|+++|+.||.+||..||.+|+ +||+.||+.||.++||+
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 47899999999999999999999999999999999999 99999999999999984
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=113.13 Aligned_cols=55 Identities=33% Similarity=0.850 Sum_probs=51.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCCCCCC
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSPFFP 157 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~~~~p 157 (521)
.....||++|+.+||+||++|| +||..||++|++||+.||+.||.++|+++++..
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~ 70 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLE 70 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhcccccccc
Confidence 3467899999999999999999 999999999999999999999999999997654
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=2.4e-13 Score=105.98 Aligned_cols=56 Identities=38% Similarity=0.678 Sum_probs=51.7
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCCC
Q 009958 99 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNSP 154 (521)
Q Consensus 99 ~~~~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~~ 154 (521)
+.++....||++||.+|+++|+.||.+||..||.+|++||+.||+.||.++++.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 34577889999999999999999999999999999999999999999999988764
No 7
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=103.18 Aligned_cols=58 Identities=26% Similarity=0.712 Sum_probs=51.3
Q ss_pred CCCCCcCCccccccccc-CCCCeeEEcCCCCCcccchhhhhccccccCCCCCCCeeeccC
Q 009958 39 AGEGKRALYHCNYCNKD-ITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDN 97 (521)
Q Consensus 39 ~~~~~~~~~~Cd~C~~~-i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~~ 97 (521)
++++....+.||+|+.. |.+ .||+|++|+|||||..||..|.+.+.|+++|+|+.+..
T Consensus 4 ~~~~v~H~~~Cd~C~~~pi~G-~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 4 GSSGVFHPVECSYCHSESMMG-FRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp CSSSCCSCSCCSSSCCCSSCS-CEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred CcCCceeCCCCcCCCCcceec-ceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence 34555566899999986 887 99999999999999999999999999999999998753
No 8
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.12 E-value=5.3e-11 Score=98.44 Aligned_cols=64 Identities=28% Similarity=0.540 Sum_probs=53.9
Q ss_pred CCCCCCCc-CCcccccccc-cCCCCeeEEcCCCCC---cccchhhhhccccccCCCCCCCeeeccCCCCC
Q 009958 37 QGAGEGKR-ALYHCNYCNK-DITGKIRIKCAVCPD---FDLCIECFSVGVEVHPHKSNHPYRVMDNLSFP 101 (521)
Q Consensus 37 ~~~~~~~~-~~~~Cd~C~~-~i~~~~ri~C~~C~d---~dLC~~CF~~G~e~~~H~~~H~y~vi~~~~~~ 101 (521)
..+++... ..+.||+|+. +|.+ +||+|++|++ ||||..||..|.+...|+++|+|++|.....|
T Consensus 11 ~~~~~~~~H~~~~Cd~C~~~pI~G-~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p 79 (82)
T 2fc7_A 11 QAESGFVQHVGFKCDNCGIEPIQG-VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP 79 (82)
T ss_dssp CSSTTSCEESSCCCSSSCCSSEES-CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred hccccCCeeCcCCCCCCCCCccee-ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence 44444444 4789999997 6887 9999999999 99999999999999999999999999875544
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.10 E-value=8.6e-11 Score=88.59 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=43.7
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
...||.+||.+|+++|+.||.++|..||.+|++||+.||+.||.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4689999999999999999988999999999999999999999875
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.09 E-value=1e-10 Score=88.25 Aligned_cols=46 Identities=24% Similarity=0.563 Sum_probs=43.6
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
...||.+||.+|+++|..||.+||..||.+|++||+.||+.||.++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5689999999999999999988999999999999999999999865
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.06 E-value=2e-10 Score=87.11 Aligned_cols=46 Identities=24% Similarity=0.532 Sum_probs=43.5
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 149 (521)
...||++||..|+++|+.||.++|..||.+++ +||+.||+.+|.++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999999999999 99999999999875
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.05 E-value=2.8e-10 Score=88.34 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=45.0
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
+....||.+||.+|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 456789999999999999999988999999999999999999999865
No 13
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.6e-10 Score=92.53 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=47.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhCC-----CChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 009958 102 LICPDWNADDEILLLEGIEMYGL-----GNWAEIAEHVGTKTKELCIEHYTNVYMNS 153 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~-----gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~ 153 (521)
+....||.+|+.+|+++|..||. ++|..||.+|++||..||+.||.+++...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999996 78999999999999999999999887543
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=7.2e-10 Score=88.73 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=45.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
+-...||.+||.+|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999875
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.96 E-value=7.9e-10 Score=87.19 Aligned_cols=46 Identities=22% Similarity=0.580 Sum_probs=43.2
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 149 (521)
...||.+||.+|+++|+.||.++|..||++++ +||+.||+++|.++
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999999999977 89999999999875
No 16
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=98.95 E-value=2.6e-10 Score=97.32 Aligned_cols=57 Identities=28% Similarity=0.680 Sum_probs=48.3
Q ss_pred CCcccccccc-cCCCCeeEEcCCCCCcccchhhhhccccccCCCCCCCeeeccCCCCCCCCCCCCchhH
Q 009958 45 ALYHCNYCNK-DITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMDNLSFPLICPDWNADDE 112 (521)
Q Consensus 45 ~~~~Cd~C~~-~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~~~~~~~~~~~Wta~Ee 112 (521)
..+.||+|+. .|.+ .||+|++|+|||||..||..+. | ..|.|+.|... ...|++.|.
T Consensus 30 ~gv~Cd~C~~~pI~G-~RykC~~C~d~DLC~~C~~~~~----H-~~H~f~~i~~~-----~~~w~~~e~ 87 (98)
T 2dip_A 30 LGIPCNNCKQFPIEG-KCYKCTECIEYHLCQECFDSYC----H-LSHTFTFREKR-----NQKWRSLEK 87 (98)
T ss_dssp CCCCCSSSCCSSCCS-CEEEESSSSSCEEEHHHHHTTS----G-GGSCEEECCSS-----SCCCEECCC
T ss_pred CCCCCcCCCCCCccc-CeEECCCCCCccHHHHHHccCC----C-CCCCeeEecCC-----CCCCccccc
Confidence 4489999997 5887 9999999999999999999984 8 79999998763 346988764
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.94 E-value=9.8e-10 Score=87.74 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=45.0
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhC--CCCHHHHHHHHHhhc
Q 009958 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVG--TKTKELCIEHYTNVY 150 (521)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg--tkt~~ec~~hy~~~y 150 (521)
-...||.+||.+|+++|+.||.++|..||.+++ +||..||+.||.++.
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999999999999 999999999999763
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=1.5e-09 Score=87.49 Aligned_cols=49 Identities=16% Similarity=0.433 Sum_probs=45.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 101 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 101 ~~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
.+....||.+||.+|+++++.||- +|..||.+|++||..||+.||..++
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYF 54 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 355789999999999999999995 9999999999999999999999775
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.84 E-value=2e-09 Score=91.02 Aligned_cols=59 Identities=25% Similarity=0.534 Sum_probs=49.1
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh-----ccCCCCCCCCCcc
Q 009958 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV-----YMNSPFFPLPDMS 162 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~-----yi~~~~~plp~~~ 162 (521)
...||.+|+.+|++|+..||. ..|+.||.+|++||..||+.||..+ .|.+...|+|...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~ 74 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR 74 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 568999999999999999984 4599999999999999999999987 5666677777653
No 20
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.83 E-value=1.6e-09 Score=87.52 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=45.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 009958 102 LICPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNVYMNS 153 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~ 153 (521)
+....||.+|+.+|++||.+||. .+|..||.+|++||..||+.||..+ +.+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHc
Confidence 45678999999999999999984 4799999999999999999999865 444
No 21
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.77 E-value=6e-09 Score=83.98 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=42.9
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
...||++|+.+|.+|+..|+. ++|+.||.+||+||++||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999986 5799999999999999999999977
No 22
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=98.75 E-value=3.1e-09 Score=80.35 Aligned_cols=46 Identities=37% Similarity=0.921 Sum_probs=39.8
Q ss_pred CcCCcccccccccCCCCeeEEcCCCCCcccchhhhhccccccCCCCCCCeeecc
Q 009958 43 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (521)
Q Consensus 43 ~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (521)
+...+.|++|+++| + .||+|++|+|||||..||..+. | .|++..|.
T Consensus 3 ~~~~~~Cd~C~~~i-g-~R~~C~~C~dyDLC~~C~~~~~----H--~H~m~~~~ 48 (52)
T 1tot_A 3 DRFVYTCNECKHHV-E-TRWHCTVCEDYDLCINCYNTKS----H--THKMVKWG 48 (52)
T ss_dssp CSSCEEETTTTEEE-S-SEEEESSSSSCEECHHHHHHHC----C--CSSEEEEC
T ss_pred CcCEEECCCCCCCC-c-ceEEcCCCCCchhHHHHHhCCC----C--CCceEEec
Confidence 34678999999996 4 8999999999999999999975 6 69888874
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.69 E-value=1.6e-08 Score=87.34 Aligned_cols=46 Identities=20% Similarity=0.469 Sum_probs=43.4
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 105 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
..||.+||.+|+++|+.||.++|..||.+|++||+.||+.||.++.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 5799999999999999999889999999999999999999998753
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.1e-08 Score=79.22 Aligned_cols=47 Identities=26% Similarity=0.498 Sum_probs=42.2
Q ss_pred CCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 101 PLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 101 ~~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
.+....||.+||.+|+++++.||. +|..||..+ +||+.||+.||..+
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~~~-gRt~~qcr~Rw~~~ 52 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPII-GRTAAQCLEHYEFL 52 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHHHH-SSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhccc-CcCHHHHHHHHHHH
Confidence 455789999999999999999995 999999955 59999999999976
No 25
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.13 E-value=2.2e-09 Score=90.07 Aligned_cols=50 Identities=30% Similarity=0.478 Sum_probs=45.8
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 99 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 99 ~~~~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
+.++....||.+||.+|++++..||- +|..||.+|++||..||+.||..+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 45567889999999999999999995 899999999999999999999854
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.67 E-value=1.8e-08 Score=86.52 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=44.4
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
....||.+||.+|+++|+.||.++|..||.+|++||+.||+.||.++
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 35789999999999999999988999999999999999999999976
No 27
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.67 E-value=2.2e-08 Score=82.85 Aligned_cols=46 Identities=15% Similarity=0.341 Sum_probs=42.9
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHH----hCCCCHHHHHHHHHhhc
Q 009958 105 PDWNADDEILLLEGIEMYGLGNWAEIAEH----VGTKTKELCIEHYTNVY 150 (521)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~gnW~~Ia~~----vgtkt~~ec~~hy~~~y 150 (521)
..||.+||..|+++|+.||.|+|..|+.. +.+||..+|+++|.++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 36999999999999999999999999996 78999999999999864
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.59 E-value=2.5e-08 Score=89.24 Aligned_cols=47 Identities=19% Similarity=0.377 Sum_probs=44.2
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
.+.||.+||.+|+++|+.||.+||..||.+|++||+.||+.||.++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 46799999999999999999999999999999999999999999764
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.59 E-value=6.2e-08 Score=86.25 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=45.4
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
+....||.+||.+|+++|+.||.++|..||.+|++||+.||+.||.++.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 4568899999999999999999889999999999999999999999753
No 30
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.56 E-value=8.7e-08 Score=77.37 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=42.9
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 009958 99 SFPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148 (521)
Q Consensus 99 ~~~~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 148 (521)
+..+....||.+||.+|++++..|| .+|..||.++ +||..+|+.+|..
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH
Confidence 3345678999999999999999999 5699999999 9999999999974
No 31
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.2e-07 Score=73.80 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=41.4
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 148 (521)
...||.+|..+|++++..|| .+|..||.+|++||..||+.||..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999 799999999999999999999964
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.50 E-value=1.2e-07 Score=84.18 Aligned_cols=48 Identities=15% Similarity=0.376 Sum_probs=44.4
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
.-...||.+||.+|+++|+.||. ||..||.+|++||+.||+.||.++.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 44678999999999999999995 9999999999999999999999764
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.43 E-value=3e-07 Score=79.38 Aligned_cols=47 Identities=17% Similarity=0.488 Sum_probs=43.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
+....||.+||.+|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999 6999999999999999999999864
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.43 E-value=2.4e-07 Score=79.49 Aligned_cols=47 Identities=19% Similarity=0.497 Sum_probs=43.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
+....||.+||..|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4567899999999999999999 7999999999999999999999854
No 35
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.39 E-value=3.7e-07 Score=80.65 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=44.1
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 150 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~y 150 (521)
...||.+||..|+++|+.||.|+|..|+.+. .+||..+|+++|.++.
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999999986 6899999999999875
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.37 E-value=3.7e-07 Score=81.11 Aligned_cols=47 Identities=26% Similarity=0.551 Sum_probs=43.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
+....||.+||.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4467899999999999999999 7999999999999999999999864
No 37
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.36 E-value=3.1e-07 Score=79.12 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=45.3
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhccC
Q 009958 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVYMN 152 (521)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~yi~ 152 (521)
-...||.+||..|+++|+.||.|+|..|+... .+||..+|+++|.++.-.
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999976 689999999999987543
No 38
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.34 E-value=5.7e-07 Score=86.65 Aligned_cols=50 Identities=18% Similarity=0.468 Sum_probs=44.9
Q ss_pred CCCCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 100 FPLICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 100 ~~~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
.+-....||.+|..++++|+..|| .+|..||++|||||..||+.||.++-
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 334567899999999999999999 79999999999999999999998653
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.33 E-value=4.7e-07 Score=80.91 Aligned_cols=48 Identities=13% Similarity=0.385 Sum_probs=44.3
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
+..+.||.+||.+|++++..|| ++|..||.+|++||..+|+.||..+.
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSI 99 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4467899999999999999999 89999999999999999999998763
No 40
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.30 E-value=7.6e-07 Score=79.12 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=43.6
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
+-...||.+||..|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999 7999999999999999999999854
No 41
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.30 E-value=4.9e-07 Score=79.72 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=44.5
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHh----CCCCHHHHHHHHHhhc
Q 009958 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHV----GTKTKELCIEHYTNVY 150 (521)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~v----gtkt~~ec~~hy~~~y 150 (521)
-...||.+||..|+++|+.||.|+|..|+.+. .+||..+|+++|.++-
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999996 6899999999999864
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.29 E-value=7.9e-07 Score=81.88 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=44.7
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
+....||.+||..|+++|..||.++|..||.+|++||+.||+.||.++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 446789999999999999999988999999999999999999999875
No 43
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.29 E-value=1.2e-06 Score=70.49 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=40.7
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
...||.+|+.+|..|+.+|+- +.|+.||.++ +||.+||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 568999999999999999984 4599999999 59999999999875
No 44
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.25 E-value=1.5e-07 Score=86.79 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=8.6
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
...||.+||.+|+++|+.||.++|..||.+|++||+.||+.||.++.
T Consensus 6 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 52 (159)
T 1h89_C 6 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 52 (159)
T ss_dssp -------------------------------------CHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHcc
Confidence 56899999999999999999999999999999999999999999764
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=9.7e-06 Score=63.45 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=41.2
Q ss_pred CCCCCCCchhHHHHHHHHHHhCCCChHHHHHH-hCCCCHHHHHHHHH
Q 009958 102 LICPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYT 147 (521)
Q Consensus 102 ~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~-vgtkt~~ec~~hy~ 147 (521)
+....||++|-.++++|+.+|| -||..|+.+ |++||..||..+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3457899999999999999999 699999996 99999999999886
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.92 E-value=8.9e-06 Score=86.77 Aligned_cols=47 Identities=19% Similarity=0.507 Sum_probs=43.5
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
....||.+|-.++++||..|| .||..||++|||||..||+.||.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457899999999999999999 79999999999999999999998653
No 47
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.91 E-value=2e-06 Score=68.88 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=39.6
Q ss_pred CCCCCchhHHHHHHHHHHhCCC---ChHHHHHHhCCCCHHHHHHHHH
Q 009958 104 CPDWNADDEILLLEGIEMYGLG---NWAEIAEHVGTKTKELCIEHYT 147 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~g---nW~~Ia~~vgtkt~~ec~~hy~ 147 (521)
...||.+|..+|-.||.+|+.+ .|+.||..||+||++||+.||.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4679999999999999999865 6999999999999999999985
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.78 E-value=3.1e-05 Score=60.16 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=41.5
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHH---HhCCCCHHHHHHHHHhh
Q 009958 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAE---HVGTKTKELCIEHYTNV 149 (521)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~---~vgtkt~~ec~~hy~~~ 149 (521)
....||.+|+..|+++|+.||. +|..|+. ++..||.-..+++|.++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence 3578999999999999999996 9999994 66789999999999875
No 49
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.74 E-value=3.3e-05 Score=61.68 Aligned_cols=44 Identities=27% Similarity=0.496 Sum_probs=40.6
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHH-hCCCCHHHHHHHHHh
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEH-VGTKTKELCIEHYTN 148 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~-vgtkt~~ec~~hy~~ 148 (521)
...||++|-.++.+|+..|| -||..|+.+ |++||..||..+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45799999999999999999 599999995 999999999999973
No 50
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.62 E-value=5.9e-05 Score=63.70 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=41.2
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 148 (521)
...||.+|..++.+++..|| .+|..||++|++||..||..+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999 799999999999999999999963
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.57 E-value=3.9e-05 Score=74.59 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=42.5
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCC-----hHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 103 ICPDWNADDEILLLEGIEMYGLGN-----WAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gn-----W~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
-...||.+||..||+++.++|-.+ |..||.+|.+||..+|+.||..+-
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYL 59 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356899999999999999998532 999999999999999999998653
No 52
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.23 E-value=0.0034 Score=48.31 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=40.4
Q ss_pred CCCCCchhHHHHHHHHHHh--------CCCChHHHHH-HhCCCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMY--------GLGNWAEIAE-HVGTKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~--------G~gnW~~Ia~-~vgtkt~~ec~~hy~~~ 149 (521)
+..||++||..|++.|..| |---|+++|+ .+..+|-..|++||.+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 3579999999999999999 3334999999 89999999999999974
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.19 E-value=0.007 Score=50.78 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHh-----CCCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHV-----GTKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~v-----gtkt~~ec~~hy~~~ 149 (521)
..+||.+|+..|++.++.|| ..|--|++.. ++||.++.+.+|..+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 37999999999999999999 5899999999 479999999999864
No 54
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.07 E-value=0.0041 Score=61.97 Aligned_cols=32 Identities=28% Similarity=0.724 Sum_probs=28.7
Q ss_pred CCCCCCCCchhHHHHHHHHHHhCCCChHHHHH
Q 009958 101 PLICPDWNADDEILLLEGIEMYGLGNWAEIAE 132 (521)
Q Consensus 101 ~~~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~ 132 (521)
+-+.-.|+++||..||-||..||||+|+.|-.
T Consensus 165 ~~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 165 QNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp TTSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 34567899999999999999999999999955
No 55
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.89 E-value=0.012 Score=48.84 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=40.8
Q ss_pred CCCchhHHHHHHHHHHhCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 106 DWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 106 ~Wta~Eel~LLeai~~~G~--gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
-||.++|..+|.+.++-|. .-|..||..+|+|+++|+..||.++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5999999999999999985 3699999999999999999999876
No 56
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=95.75 E-value=0.029 Score=48.02 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=60.0
Q ss_pred cCCCCHHHHHHHHHh------CCCchHHHHHHHHHHHHHHhC--CCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 452 TQLLSEAEKRLCCEI------RLAPPLYLRMQEVMSREIFSG--NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 452 ~~lLs~~Ek~LC~~l------rL~P~~YL~iK~~LirE~~~~--G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+..++-|++.+-.+ .=.|..||.|...||.-+..+ -.|+.++++..+.-|++-+.||+.||..-|+|-
T Consensus 22 ~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 22 LEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp TTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSS
T ss_pred cccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHHHHcCeec
Confidence 467888898888875 346999999999999988843 479999999999999999999999999999983
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.64 E-value=0.0088 Score=56.93 Aligned_cols=31 Identities=39% Similarity=0.717 Sum_probs=27.7
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHH
Q 009958 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEH 133 (521)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~ 133 (521)
+...||.+||..||-||..||+|+|+.|-.-
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3567999999999999999999999999663
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.30 E-value=0.013 Score=59.23 Aligned_cols=48 Identities=29% Similarity=0.455 Sum_probs=42.5
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHhhccCC
Q 009958 105 PDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTNVYMNS 153 (521)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~~yi~~ 153 (521)
.+||..+-..++.|++.||-++|+.||..|++||++|++ +|.+.|+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~-~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVI-EYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHH-HHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHH-HHHHHHHHh
Confidence 489999999999999999999999999999999999995 555566544
No 59
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.14 E-value=0.011 Score=48.57 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=37.5
Q ss_pred CCCCchhHHHHHHHHHHhCC---------CChHHHHHHhC----CCCHHHHHHHHHhh
Q 009958 105 PDWNADDEILLLEGIEMYGL---------GNWAEIAEHVG----TKTKELCIEHYTNV 149 (521)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~---------gnW~~Ia~~vg----tkt~~ec~~hy~~~ 149 (521)
..||.+|.++||++...... .-|+.||+.|. .+|+.||+..|.++
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 57999999999998865321 15999999986 69999999999875
No 60
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.41 E-value=0.064 Score=41.84 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=41.6
Q ss_pred CCCCCchhHHHHHHHHHHhCCCC--hHHHHHHhC--CCCHHHHHHHHHhhcc
Q 009958 104 CPDWNADDEILLLEGIEMYGLGN--WAEIAEHVG--TKTKELCIEHYTNVYM 151 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gn--W~~Ia~~vg--tkt~~ec~~hy~~~yi 151 (521)
.-.||.+....+++||+.+|... |..|.+.|+ +-|..++..|..+|.+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999433 789999998 5799999999988754
No 61
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.02 E-value=0.066 Score=46.29 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=58.9
Q ss_pred cCCCCHHHHHHHHHh-----CCCchHHHHHHHHHHHHHH--hCCCCCHHHhhhhhc--cCchhHHHHHHHHHHCCCCC
Q 009958 452 TQLLSEAEKRLCCEI-----RLAPPLYLRMQEVMSREIF--SGNVNNKADAHHLFK--IEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 452 ~~lLs~~Ek~LC~~l-----rL~P~~YL~iK~~LirE~~--~~G~lkk~~a~~l~k--iD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+..++-|++.+-.+ .=.|..||.|...||.-+. ..-.|+.+++++.++ -|++-+.||+.||...|+|-
T Consensus 24 ~~~ih~iEk~~lPefF~g~~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~RVh~FLe~wGLIN 101 (111)
T 2dce_A 24 RNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAIN 101 (111)
T ss_dssp SSCCCHHHHTTSGGGGSCCSSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHHHHHHHHHHSSSS
T ss_pred cccCCHHHHHhChHHhcCCcccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHHHHHHHHHcCeee
Confidence 567888888888665 4589999999999998887 345799999998884 79999999999999999983
No 62
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.84 E-value=0.093 Score=43.86 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=40.9
Q ss_pred CCCCCchhHHHHHHHHHHhCCCChHHHHHHhC-----CCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYGLGNWAEIAEHVG-----TKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg-----tkt~~ec~~hy~~~ 149 (521)
..+||.+|+-.|++.++.|++ .|--|++... .||.++.+.||..+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 468999999999999999994 8999999874 69999999999865
No 63
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=92.71 E-value=0.012 Score=46.19 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=39.3
Q ss_pred CCCCchhHHHHHHHHHHhCC--CChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 105 PDWNADDEILLLEGIEMYGL--GNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~--gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
--||.+||..+|..+++-|. .-|..||..+ +||++|+..+|.++
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 35999999999999999985 2599999999 79999999999875
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=92.61 E-value=0.022 Score=60.89 Aligned_cols=45 Identities=16% Similarity=0.416 Sum_probs=0.0
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCChHHHHHHhCCCCHHHHHHHHHh
Q 009958 103 ICPDWNADDEILLLEGIEMYGLGNWAEIAEHVGTKTKELCIEHYTN 148 (521)
Q Consensus 103 ~~~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vgtkt~~ec~~hy~~ 148 (521)
+...||.+|..++.+++..|| .||..|+.+|++||..+|..+|..
T Consensus 188 ~~d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHG-KTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp ----------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcC-ccHHHHHHHcCCCCHHHHHHHhcc
Confidence 456899999999999999999 799999999999999999998864
No 65
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.89 E-value=0.17 Score=51.01 Aligned_cols=46 Identities=9% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHH------------HhCCCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAE------------HVGTKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~------------~vgtkt~~ec~~hy~~~ 149 (521)
...||.+||..||-++..||+ |+|+.|-. ++-+||+.|+..|-..+
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 578999999999999999999 99999974 44589999988776644
No 66
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=90.47 E-value=0.19 Score=40.42 Aligned_cols=42 Identities=31% Similarity=0.808 Sum_probs=32.4
Q ss_pred cccccCC-CCeeEEcCCCC---CcccchhhhhccccccCCCCCCCeeeccC
Q 009958 51 YCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMDN 97 (521)
Q Consensus 51 ~C~~~i~-~~~ri~C~~C~---d~dLC~~CF~~G~e~~~H~~~H~y~vi~~ 97 (521)
.|++.+. +.+.|+|.+|. ...||..||..+. |. .|.|.+...
T Consensus 6 ~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~----H~-gH~~~~~~s 51 (75)
T 3ny3_A 6 LCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSI----HR-DHRYRMTTS 51 (75)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSG----GG-GSCEEEEEC
T ss_pred ccCCcccCCCEEEECccCCCCCCeeEChHHCCCCC----cC-CceEEEEEc
Confidence 4777763 66999999995 3569999999864 74 688988754
No 67
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=88.62 E-value=0.33 Score=50.23 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=49.5
Q ss_pred CCCCchhHHHHHHHHHHhCCCChHHHHHHhC-CCCHHHHHHHHHhhccCCCCCCCCCccccc
Q 009958 105 PDWNADDEILLLEGIEMYGLGNWAEIAEHVG-TKTKELCIEHYTNVYMNSPFFPLPDMSHVV 165 (521)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G~gnW~~Ia~~vg-tkt~~ec~~hy~~~yi~~~~~plp~~~~~~ 165 (521)
.+||..+=..++.|++.||-++-+.||..|+ +||++|++ .|.+.|.... -.+.+....|
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry-~Ei~d~erii 183 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNI-ERIEDYEKYL 183 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTC-SSCSCCTTTH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhh-hhhccHHHHH
Confidence 4899999999999999999999999999998 99999999 7888887764 3344444443
No 68
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=87.30 E-value=0.31 Score=40.28 Aligned_cols=32 Identities=31% Similarity=0.713 Sum_probs=28.0
Q ss_pred CcccccccccCCCCeeEEcCCCCCcccchhhhhc
Q 009958 46 LYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 79 (521)
Q Consensus 46 ~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~~ 79 (521)
.+.|+.|+..+.+ .+|+|..|. |+|-+.|...
T Consensus 47 ~~~C~~C~~~~~~-~~Y~C~~C~-f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTI-WSYHCDECD-FDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCS-CEEECTTTC-CCCCHHHHHC
T ss_pred CeEeCCCCCcCCC-cEEEcCCCC-CeEcHHhcCC
Confidence 4799999999876 899999995 9999999864
No 69
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=86.76 E-value=0.55 Score=44.31 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=37.4
Q ss_pred CCCCchhHHHHHHHHHHhC--CCChHHHHHHhC--CCCHHHHHHHHH
Q 009958 105 PDWNADDEILLLEGIEMYG--LGNWAEIAEHVG--TKTKELCIEHYT 147 (521)
Q Consensus 105 ~~Wta~Eel~LLeai~~~G--~gnW~~Ia~~vg--tkt~~ec~~hy~ 147 (521)
.+||..|-..|+.|+..|| .+.|++|+.... .||.++++..+.
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~ 54 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGE 54 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHH
Confidence 5899999999999999999 688999998754 899999986443
No 70
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=86.16 E-value=0.81 Score=37.31 Aligned_cols=43 Identities=28% Similarity=0.541 Sum_probs=32.7
Q ss_pred ccccccCC-CCeeEEcCCCC---CcccchhhhhccccccCCCCCCCeeeccC
Q 009958 50 NYCNKDIT-GKIRIKCAVCP---DFDLCIECFSVGVEVHPHKSNHPYRVMDN 97 (521)
Q Consensus 50 d~C~~~i~-~~~ri~C~~C~---d~dLC~~CF~~G~e~~~H~~~H~y~vi~~ 97 (521)
..|+..+. +.+.|+|..|. ...||..||-.+. |. +|.|.+...
T Consensus 9 ~~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~----H~-gH~~~~~~s 55 (82)
T 3nis_A 9 RNCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKD----HV-NHHVCTDIC 55 (82)
T ss_dssp SCCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGG----GT-TSCEEEEEC
T ss_pred CCCCCcccCCCEEEEeeccCCCCCceEchhhCCCCC----cC-CceEEEEEe
Confidence 45888763 56999999994 3569999999864 85 789987643
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=80.21 E-value=1.7 Score=44.88 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=38.1
Q ss_pred CCCCCchhHHHHHHHHHHhCC---CChHHHHHHh------------CCCCHHHHHHHHHh
Q 009958 104 CPDWNADDEILLLEGIEMYGL---GNWAEIAEHV------------GTKTKELCIEHYTN 148 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G~---gnW~~Ia~~v------------gtkt~~ec~~hy~~ 148 (521)
...||.+||..||-++..||+ |+|+.|-..| -+||+.|+..|-..
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t 287 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT 287 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 568999999999999999999 9999996654 37999998765543
No 72
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.07 E-value=1.7 Score=35.89 Aligned_cols=35 Identities=26% Similarity=0.758 Sum_probs=28.7
Q ss_pred CCcccccccccC----CCCeeEEcCCCCCcccchhhhhcc
Q 009958 45 ALYHCNYCNKDI----TGKIRIKCAVCPDFDLCIECFSVG 80 (521)
Q Consensus 45 ~~~~Cd~C~~~i----~~~~ri~C~~C~d~dLC~~CF~~G 80 (521)
....|.+|+-++ .+.+++-|.+|. |-+|-.||-.-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~-FPvCrpCyEYE 53 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG-FPACRPCYEYE 53 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC-CCCCHHHHHHH
T ss_pred CCCccccccCccccCCCCCEEEeeeccC-ChhhHHHHHHH
Confidence 335899999875 456999999997 99999999763
No 73
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=64.60 E-value=4.8 Score=31.35 Aligned_cols=33 Identities=39% Similarity=0.839 Sum_probs=26.8
Q ss_pred CCcccccccccCCCCeeEEcCCCCCcccchhhhhccc
Q 009958 45 ALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGV 81 (521)
Q Consensus 45 ~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~ 81 (521)
....|.+|..+-+ ++|..|.+-..|..||..+-
T Consensus 7 e~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT----LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC----EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe----EEecCCCCceehHHHHHHHc
Confidence 4567999998844 79999986667999999864
No 74
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=63.84 E-value=3.2 Score=31.69 Aligned_cols=30 Identities=27% Similarity=0.729 Sum_probs=24.9
Q ss_pred ccccccccCCCCeeEEcCCCCCcccchhhhh
Q 009958 48 HCNYCNKDITGKIRIKCAVCPDFDLCIECFS 78 (521)
Q Consensus 48 ~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~ 78 (521)
.|.+|++.+....+|+|..|. ..+|.+|=.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~-~~FC~dCD~ 46 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQ-NVFCVDCDV 46 (59)
T ss_dssp EETTTTEECTTSEEECCTTTT-CCBCHHHHH
T ss_pred cccccCcccCCCccEECCccC-cCcccchhH
Confidence 599999998765679999997 668999854
No 75
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=56.61 E-value=13 Score=32.45 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=42.2
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 463 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 463 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...++|.|.+|..+--+...+-..+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 26 l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 26 LRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp HGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 4568999999987766655444456778888888888999999999999999999983
No 76
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=52.42 E-value=21 Score=30.50 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=46.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 459 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 459 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
-...+..++|.|..|..+..+ .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~~lt~~q~~iL~~l------~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 27 LKDLQTEYGISAEQSHVLNML------SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH------HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCCHHHHHHHHHH------HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345567789999999888655 34667877877788999999999999999999984
No 77
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=52.36 E-value=21 Score=28.38 Aligned_cols=45 Identities=13% Similarity=0.256 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCCC
Q 009958 473 YLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAPP 521 (521)
Q Consensus 473 YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~~ 521 (521)
|-..++.++ ..+.-+.+-.+.-|+|..|++.+|.|-|...|+|.+
T Consensus 12 y~~A~~~V~----~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 12 YDEAVRFVT----ESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTP 56 (73)
T ss_dssp HHHHHHHHH----HHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHH----hcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCc
Confidence 455555554 346666777888899999999999999999999975
No 78
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=50.66 E-value=22 Score=29.90 Aligned_cols=56 Identities=9% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 82 (142)
T 2bv6_A 27 NKVFKKYNLTYPQFLVLTILW-----DESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIK 82 (142)
T ss_dssp HHTHHHHTCCHHHHHHHHHHH-----HSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEE
T ss_pred HHHhhhcCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 455678899999887665432 45678888888888999999999999999999984
No 79
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=50.26 E-value=20 Score=34.76 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=22.8
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHhhc
Q 009958 126 NWAEIAEHVGTKTKELCIEHYTNVY 150 (521)
Q Consensus 126 nW~~Ia~~vgtkt~~ec~~hy~~~y 150 (521)
-|..||++..++|....+.+|.++-
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl 197 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFL 197 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHH
Confidence 5999999999999999999998653
No 80
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=48.95 E-value=36 Score=26.93 Aligned_cols=58 Identities=10% Similarity=0.261 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 459 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 459 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+..+....+|.|..+..|..++- .+|.++..+.-..+.+...-+.++.+-|.+.|||.
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~l~~----~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 10 KDEIRCCYKITDTDVAVLLKMVE----IEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH----HCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCHHHHHHHHHHHH----cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 34455567899988777655441 36778888888889999999999999999999984
No 81
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=48.33 E-value=39 Score=29.03 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 459 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 459 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...|...++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 38 ~~~l~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 38 AKVYGDRYGMAIPEWRVITILA-----LYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH-----HSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 4455577899999988765442 36778888888888999999999999999999984
No 82
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=47.02 E-value=39 Score=29.28 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 456 SEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 456 s~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...=......++|.|..|..+..+- .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 32 ~~~~~~~l~~~glt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 32 SKYLTEHLSALEISLPQFTALSVLA-----AKPNLSNAKLAERSFIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHH-----HCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeE
Confidence 3333445567899999998776442 45678888888888999999999999999999984
No 83
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=46.92 E-value=28 Score=29.47 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+.+..++|.|.+|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 21 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 21 DKWIGQQDLNYNLFAVLYTLA-----TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 456778999999998876553 33457888878888999999999999999999984
No 84
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=46.77 E-value=18 Score=28.23 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 478 EVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 478 ~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
..++.-...+|.++..+....+.+....+.+..+.|.+.|+|.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444444466889998988889999999999999999999984
No 85
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=46.08 E-value=21 Score=28.87 Aligned_cols=36 Identities=17% Similarity=0.589 Sum_probs=30.1
Q ss_pred cCCcccccccccCCCCeeEEcCCCCCcccchhhhhc
Q 009958 44 RALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSV 79 (521)
Q Consensus 44 ~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~~ 79 (521)
.....|..|..-+.++-+++|..-+.-.+|-.|-..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 467899999999999899999887777788888654
No 86
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=44.84 E-value=41 Score=28.29 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=42.8
Q ss_pred HHHHHH--hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCE--IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~--lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+.+.. ++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~l~~~~~~lt~~~~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 25 QSELDCQRLDLTPPDVHVLKLID-----EQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHH-----HTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEE
T ss_pred HHHHhhccCCCCHHHHHHHHHHH-----hCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 445666 899999998776442 45678888888888999999999999999999984
No 87
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=44.16 E-value=30 Score=29.09 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=46.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
......++|.|..|..+.-+.- ..++.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~lt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 27 SLIKKEFSISFEEFAVLTYISE---NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHH---TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHcCCCHHHHHHHHHHHh---ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4556788999999987765431 122678888888888999999999999999999995
No 88
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.10 E-value=31 Score=28.77 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=44.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 461 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 461 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 27 PSLNQHGLTEQQWRVIRILR-----QQGEMESYQLANQACILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHTCCHHHHHHHHHHH-----HHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34557899999888776443 34567888888888999999999999999999984
No 89
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=42.30 E-value=46 Score=27.67 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=44.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGN-VNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G-~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...+..++|.|..|..+.-+.- .+| .++..+....+.++..-+.++.+-|++.|||.
T Consensus 24 ~~~~~~~~lt~~~~~iL~~l~~----~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 24 DIFAKKYDLTGTQMTIIDYLSR----NKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHH----TTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHH----CCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 4455678999998887764431 232 68888888889999999999999999999984
No 90
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=41.83 E-value=30 Score=29.08 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 19 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 19 NIEFKELSLTRGQYLYLVRVC-----ENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHTGGGTCTTTHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 345567889999988765442 45678888888889999999999999999999984
No 91
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=41.77 E-value=34 Score=29.18 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=45.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
......++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 31 EKKLKQFGITYSQYLVMLTLW-----EENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 344567899999988776542 35778888888888999999999999999999984
No 92
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=41.26 E-value=38 Score=29.07 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 459 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 459 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
++.|...++|.|..|..+.-+- ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 36 ~~~l~~~~~l~~~~~~iL~~L~----~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 36 NRQLLDETGLSLAKFDAMAQLA----RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHH----HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 3445557899999998775441 245678888888888999999999999999999984
No 93
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.72 E-value=66 Score=24.80 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=32.6
Q ss_pred CCCCcCCcccccccccCCCCeeEEcCCCCCcccchhhhhccccccCCCCCCCeeecc
Q 009958 40 GEGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (521)
Q Consensus 40 ~~~~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (521)
.+.+....+|..|.+.+.- +-++| .|. ..+|.. ..++..|.=..+|+-+.
T Consensus 9 ~~~~~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 9 SRPVRPNNRCFSCNKKVGV-MGFKC-KCG-STFCGS----HRYPEKHECSFDFKEVG 58 (64)
T ss_dssp SCCSCCSCSCTTTCCCCTT-SCEEC-TTS-CEECSS----SCSSTTTTCCCCCSCSC
T ss_pred CCCCCcCCcChhhCCcccc-cCeEe-ecC-CEeccc----CCCccccCCCcchhHHh
Confidence 3344456799999998653 56999 787 446643 34455676666676554
No 94
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=40.70 E-value=38 Score=28.35 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=46.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+.+..++|.|..|..+..+. ..+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~----~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 27 DRRLSHLGLSQARWLVLLHLA----RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHTGGGCCTTTHHHHHHHHH----HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCCCCHHHHHHHHHHH----HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 344567889999987775542 256778888888889999999999999999999984
No 95
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=40.68 E-value=46 Score=26.20 Aligned_cols=55 Identities=7% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 461 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 461 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.....++|.|..+..+.-+ ..+|.++..+....+.++...+.++.+-|.+.|||.
T Consensus 11 ~~l~~~~l~~~~~~il~~l-----~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 11 KALEKLSFKPSDVRIYSLL-----LERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHTCCCHHHHHHHHHH-----HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHH-----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4566888988877666433 234668888888888999999999999999999984
No 96
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=40.55 E-value=38 Score=28.81 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 457 EAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 457 ~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
..=.+....++|.|.+|..+.-+. ..++.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~l~~~glt~~q~~vL~~l~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 26 GAVNKALVPTGLRVRSYSVLVLAC----EQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHH----HSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH----hCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 333455567899999998776332 244467777777788899999999999999999984
No 97
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=40.42 E-value=42 Score=28.45 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 454 LLSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 454 lLs~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+...=......++|.|.+|..+.-+.- ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 25 KLKTSADARLAELGLNSQQGRMIGYIYE---NQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HTTHHHHHHHHHTTCCHHHHHHHHHHHH---HTTTCCCHHHHHHC------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHh---CCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 3455556667789999999987765432 122678888888888999999999999999999985
No 98
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=40.07 E-value=38 Score=28.07 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=43.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 461 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 461 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 20 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 20 RELGHLNLTDAQVACLLRIH-----REPGIKQDELATFFHVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHSGGGTCCHHHHHHHHHHH-----HSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456788888887665432 45778888888888999999999999999999984
No 99
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=40.01 E-value=36 Score=28.20 Aligned_cols=53 Identities=8% Similarity=0.044 Sum_probs=42.9
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 463 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 463 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+..++|.|..|..+..+ ..+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 26 IEQYDISYVQFGVIQVL-----AKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp TGGGTCCHHHHHHHHHH-----HHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCee
Confidence 45577888888766543 246778888888889999999999999999999984
No 100
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=39.85 E-value=31 Score=29.10 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=42.3
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 463 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 463 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 30 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 30 IASYDVTPEQWSVLEGIE-----ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp TTTSSSCHHHHHHHHHHH-----HHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhhCCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCee
Confidence 345688888887776443 23777777877888999999999999999999984
No 101
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=39.68 E-value=40 Score=27.46 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=37.8
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 466 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 466 lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+|.|.+++.++.+. ++-..|+. ..+...-+.++...+.+|.+-|.+.|||.
T Consensus 16 ~~Lt~~q~~Vl~~I~--~~g~~gi~-qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIE--DAGNKGIW-SRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CCSCSSHHHHHHHHH--HHCTTCEE-HHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHHH--HcCCCCcC-HHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 356777888777544 33244544 44555667899999999999999999985
No 102
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=38.76 E-value=50 Score=27.89 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=45.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 30 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 30 ERGTLREGVTVGQRAILEGLS-----LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 345567899999888775442 45678888888888999999999999999999984
No 103
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=38.62 E-value=49 Score=27.88 Aligned_cols=54 Identities=22% Similarity=0.179 Sum_probs=40.6
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 466 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 466 lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
++|.+..+-.++. |+.-...++.++..+.-..+.++..-+.++.+-|.+.|||.
T Consensus 9 ~~lt~~~~~~L~~-l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 9 SNLSRREFSYLLT-IKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp --CCHHHHHHHHH-HHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhcCHHHHHHHHH-HHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 4677777777763 32222256788888888888999999999999999999984
No 104
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=38.37 E-value=51 Score=27.99 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=45.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 86 (154)
T 2qww_A 31 DQNAASLGLTIQQLAMINVIY-----STPGISVADLTKRLIITGSSAAANVDGLISLGLVV 86 (154)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH-----HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345567889998887765432 45668888888888999999999999999999984
No 105
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=37.93 E-value=39 Score=29.12 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 457 EAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 457 ~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
..=.+.+..++|.|.+|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 37 ~~~~~~l~~~~lt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 37 IYIGKKIEPYGIGSGQFPFLMRLY-----REDGINQESLSDYLKIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHHGGGTCCTTTHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 333455667899999998776542 35677888888888999999999999999999984
No 106
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=37.55 E-value=50 Score=27.64 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 459 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 459 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
-...+...+|.|..|..+..+ . +|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~~~l~~~~~~iL~~l-----~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 26 LNRRLGELNLSYLDFLVLRAT-----S-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH-----T-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHH-----h-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 345667788988888776543 2 6778888888888999999999999999999984
No 107
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=36.85 E-value=40 Score=27.98 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhh-hhccCchhHHHHHHHHHHCCCC
Q 009958 462 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHH-LFKIEPSKIDRVYDMLVKKGLA 519 (521)
Q Consensus 462 LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~-l~kiD~~k~~~Iydfl~~~Gwi 519 (521)
=|+..+|.+.+|-.+.. ..++|..+..+... ...+|.+-+++=...|.+.|||
T Consensus 8 ~~~~~~L~~~QfsiL~~-----L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlV 61 (95)
T 1bja_A 8 KASNDVLNEKTATILIT-----IAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLV 61 (95)
T ss_dssp HHTTTSSCHHHHHHHHH-----HHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSE
T ss_pred hHHhcCCCHHHHHHHHH-----HHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCe
Confidence 37788899988865433 34777888888888 7789999999999999999998
No 108
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=35.66 E-value=29 Score=29.33 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...+..++|.|.+|..+..+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~glt~~q~~vL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 26 TNYLKEYDLTYTGYIVLMAI-----ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHGGGTCCHHHHHHHHHS-----CTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeE
Confidence 34456788999888766433 246778888888888999999999999999999984
No 109
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.31 E-value=32 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhCCCChHHHHHHhCC
Q 009958 110 DDEILLLEGIEMYGLGNWAEIAEHVGT 136 (521)
Q Consensus 110 ~Eel~LLeai~~~G~gnW~~Ia~~vgt 136 (521)
-|...+..+++.+| ||+..+|+.+|-
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGi 44 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCc
Confidence 46677889999999 999999999983
No 110
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=34.73 E-value=61 Score=27.94 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 455 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 455 Ls~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+...-.+.+..++|.|.+|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 38 ~~~~~~~~~~~~glt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 38 WSSELNQALASEKLPTPKLRLLSSLS-----AYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHH-----HHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 44444556678999999998776543 23567777888888999999999999999999984
No 111
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=34.61 E-value=44 Score=28.19 Aligned_cols=56 Identities=13% Similarity=0.273 Sum_probs=44.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 32 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 32 REILTNYPITPPQFVALQWLL-----EEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHTTSSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 344567788888887775432 34667888888888999999999999999999984
No 112
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=34.58 E-value=61 Score=27.56 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=45.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+.....+|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 33 ~~~l~~~~lt~~~~~iL~~l-----~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 33 HDHIRAQGLRVPEWRVLACL-----VDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHH-----SSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34456789999988765432 256778888888889999999999999999999984
No 113
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=34.12 E-value=49 Score=26.24 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=38.4
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHh----hhhhccCchhHHHHHHHHHHCCCCC
Q 009958 465 EIRLAPPLYLRMQEVMSREIFSGNVNNKADA----HHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 465 ~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a----~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.++|.|.+|..+..+ ..+|.++..+. ...+.++..-+.++.+-|++.|||.
T Consensus 3 ~~~lt~~q~~iL~~l-----~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 3 STPFFYPEAIVLAYL-----YDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp CCSSBCHHHHHHHHH-----TTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 356777777655433 34567777666 5667899999999999999999984
No 114
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=34.02 E-value=42 Score=28.57 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 459 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 459 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
-.+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 36 ~~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 36 YRGLLKALDLTYPQYLVMLVLW-----ETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHTTTTTCCHHHHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHH-----hCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 3445567889998887765332 35678888888888999999999999999999984
No 115
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=33.85 E-value=56 Score=28.06 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 42 ~~~l~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 42 RKEMTALGLSTAKMRALAILS-----AKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HTTHHHHTCCHHHHHHHHHHH-----HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 344567899999888775432 45778888888889999999999999999999984
No 116
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.79 E-value=94 Score=23.95 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=31.7
Q ss_pred CcCCcccccccccCCCCeeEEcCCCCCcccchhhhhccccccCCCCCCCeeecc
Q 009958 43 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (521)
Q Consensus 43 ~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (521)
+....+|..|.+.+.- +-++| .|. ..+|.. -.++..|.=..+|+-+.
T Consensus 12 k~~~~rC~~C~kkvgl-~~f~C-rCg-~~FC~~----HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGL-TGFMC-RCG-TTFCGS----HRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp CSSCCCCTTTCCCCCT-TCEEC-SSS-CEECTT----TCSTTTTTCCCCCSCCC
T ss_pred CCcCCcChhhCCccCc-cCEEe-ecC-CEeccc----cCCcccCCCCchhhHHH
Confidence 4466799999997653 56999 687 446653 34455677667776554
No 117
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=33.78 E-value=33 Score=29.60 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=44.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 462 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 462 LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
....++|.+.+|-.+--+.. ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~l~~~gLt~~q~~vL~~L~~---~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 27 VVKPYGLTFARYEALVLLTF---SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp HHGGGTCCHHHHHHHHHHHT---SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHHH---CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEE
Confidence 34678999999877643321 245678888888888999999999999999999984
No 118
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=33.05 E-value=50 Score=27.40 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=42.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 461 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 461 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
..+..++|.|..|..+..+. .+|.++..+....+.++...+.++.+-|++.|||.
T Consensus 25 ~~~~~~~lt~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 25 EYLSPLDITAAQFKVLCSIR-----CAACITPVELKKVLSVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHTTTTSCHHHHHHHHHHH-----HHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHhhhcCCCHHHHHHHHHHH-----hcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 34556788888887765442 34556777777788999999999999999999984
No 119
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=32.63 E-value=91 Score=24.71 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=31.1
Q ss_pred CcCCcccccccccCCCCeeEEcCCCCCcccchhhhhccccccCCCCCCCeeecc
Q 009958 43 KRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (521)
Q Consensus 43 ~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (521)
+....+|..|.+.+.- .-++|- |. ..+|.. ..++..|.-..+|+-+.
T Consensus 22 k~~~nRC~~CrKkvgL-~gf~Cr-Cg-~~FCs~----HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGL-TGFDCR-CG-NLFCGL----HRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp CSCTTBCSSSCCBCGG-GCEECT-TS-CEECSS----SCSTTTTTCCCCGGGTS
T ss_pred CCcCCcChhhCCcccc-cCeecC-CC-CEechh----cCCCccCCCcchhhhhc
Confidence 3355689999997653 458999 87 445643 44556677777776554
No 120
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=32.59 E-value=52 Score=26.75 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=34.4
Q ss_pred HHHH-hCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 482 REIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 482 rE~~-~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+.+ .+|.++.++.-..|.+...-+++..+.|.++|+|.
T Consensus 8 l~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444 78999999999999999999999999999999873
No 121
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=32.37 E-value=64 Score=27.11 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=41.0
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 465 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 465 ~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.++|.|..|..+..+ ...|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 35 ~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 35 KFGIGMTEWRIISVL-----SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp GGTCCHHHHHHHHHH-----HHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hcCCCHHHHHHHHHH-----HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 467888888665543 256678888888888999999999999999999984
No 122
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=32.14 E-value=81 Score=26.82 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=40.1
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 463 CCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 463 C~~lrL~P~~YL~iK~~LirE~~~~-G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...++|.+..|+.+=-++- -.-.+ ..++.++.-+.+.+++..+.++.+.|+++|||.
T Consensus 25 y~~lgLt~~e~~vll~L~~-~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 25 YKQLGLGEGELVLLLHMQS-FFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp TTTTTCCHHHHHHHHHHHH-HHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHcCCCHHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3466777777775433332 11122 237777777778999999999999999999983
No 123
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.11 E-value=43 Score=28.42 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHHHHHHHHhC-------CCChHHHHHHhCCCCHHHHHHHHHhh
Q 009958 113 ILLLEGIEMYG-------LGNWAEIAEHVGTKTKELCIEHYTNV 149 (521)
Q Consensus 113 l~LLeai~~~G-------~gnW~~Ia~~vgtkt~~ec~~hy~~~ 149 (521)
..|..+|...| -..|.+||..+|-......+.||.++
T Consensus 52 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~ 95 (116)
T 2li6_A 52 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRI 95 (116)
T ss_dssp THHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHH
Confidence 34556666666 13799999999966677888888876
No 124
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=31.85 E-value=54 Score=27.36 Aligned_cols=54 Identities=11% Similarity=0.206 Sum_probs=43.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 462 LCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 462 LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+...+|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 25 VLRDFGITPAQFDILQKIY-----FEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp THHHHTCCHHHHHHHHHHH-----HHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 3456788888887775432 24668888888888999999999999999999984
No 125
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=31.82 E-value=44 Score=33.69 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=40.2
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc---cCc-hhHHHHHHHHHHCCCC
Q 009958 466 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK---IEP-SKIDRVYDMLVKKGLA 519 (521)
Q Consensus 466 lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~k---iD~-~k~~~Iydfl~~~Gwi 519 (521)
=+.+|..|+.+++.|..+......++.++...+++ |.. ..+..+..||-..|.|
T Consensus 11 g~~iP~sW~~l~~~L~~~~~~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~i 68 (332)
T 3dpt_A 11 GTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIV 68 (332)
T ss_dssp ------CHHHHHHHHHHHHHHSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSS
T ss_pred CCccCHHHHHHHHHHHhhhcCCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEE
Confidence 35789999999999999877677899998877764 554 3588999999999986
No 126
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=31.71 E-value=18 Score=28.33 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.2
Q ss_pred HHHHHHHHhCccchHHHH
Q 009958 364 QDLKEARAAGCRTSAEAD 381 (521)
Q Consensus 364 ~~L~~yR~~Gi~tl~e~~ 381 (521)
.-|..|++.||+|+++++
T Consensus 60 ~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 60 AILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 347899999999999874
No 127
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=31.69 E-value=62 Score=28.12 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 455 LSEAEKRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 455 Ls~~Ek~LC~~lrL~P~~YL~iK~~LirE~~~-~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+...=.+.+..++|.|.+|..+.-+.- . ++.++..+....+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~----~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRS----VHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH----HTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEe
Confidence 344445556888999999988753321 2 3577888888888999999999999999999984
No 128
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.02 E-value=56 Score=27.69 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
...+...+|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 27 LESMEKQGVTPAQLFVLASLK-----KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH-----HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 445566899999987775432 34567888888888999999999999999999984
No 129
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=30.92 E-value=80 Score=26.25 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=45.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.++...++|.|..+-.+.-+.+ .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 16 ~~~~~~~gl~~~~~~il~~L~~----~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 16 SELAKIHGLNKSVGAVYAILYL----SDKPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH----CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCChhHHHHHHHHHH----cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4566778999988766554422 34678888888888999999999999999999984
No 130
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=30.89 E-value=56 Score=24.73 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=34.5
Q ss_pred HHHHHH-hCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 480 MSREIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 480 LirE~~-~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
|+.+.. ++|++..+.+-+-+.++...+-.+..=|.++|.|.
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 344444 78899999999999999999999999999999874
No 131
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=29.99 E-value=56 Score=25.82 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHH-hCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCC
Q 009958 482 REIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 519 (521)
Q Consensus 482 rE~~-~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi 519 (521)
.+.+ .+|..+.++.-..|.+...-+++..+.|.++|.|
T Consensus 8 l~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 8 RDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3444 7899999999999999999999999999999987
No 132
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=29.90 E-value=75 Score=26.36 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSG-NVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~-G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
......++|.|..|..+..+.- .+ +.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 21 ~~~~~~~~lt~~~~~vL~~l~~----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 21 DQKLEQFDITNEQGHTLGYLYA----HQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHGGGTCCHHHHHHHHHHHH----STTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 3445678899998877765432 22 478888888888999999999999999999984
No 133
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=29.62 E-value=82 Score=27.23 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=39.8
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 464 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 464 ~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
..++|.|.+|..+-.+- ..++..+..+.-..+.++..-+.++.+=|++.|||.
T Consensus 25 ~~~gLt~~q~~vL~~L~----~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 25 KPLELTQTHWVTLYNIN----RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp GGGCCCHHHHHHHHHHH----HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHHH----HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 45689999987654321 134556656666677899999999999999999983
No 134
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=29.57 E-value=39 Score=28.47 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 461 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 461 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~ 85 (147)
T 1z91_A 31 PLLDKLNITYPQYLALLLLW-----EHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLIT 85 (147)
T ss_dssp HHHTTTCCCHHHHHHHHHHH-----HHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEE
Confidence 34567788888887665443 34567777888888999999999999999999984
No 135
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=29.25 E-value=1.1e+02 Score=25.77 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCC-CCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 459 EKRLCCEIRLAPPLYLRMQEVMSREIFSGNV-NNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 459 Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~-lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
|..|-..++|.|..+-.+..++ ..+|. ++..+.-..+.++...+.+..+-|.+.|+|.
T Consensus 15 ~~~l~~~~gLt~~e~~il~~L~----~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 15 EDVIKCALNLTKADLNVMKSFL----NEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH----HSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHH----HCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4555567899988766555433 13444 8888888888999999999999999999983
No 136
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.47 E-value=1.1e+02 Score=24.31 Aligned_cols=49 Identities=20% Similarity=0.391 Sum_probs=32.8
Q ss_pred CCCcCCcccccccccCCCCeeEEcCCCCCcccchhhhhccccccCCCCCCCeeecc
Q 009958 41 EGKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGVEVHPHKSNHPYRVMD 96 (521)
Q Consensus 41 ~~~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~e~~~H~~~H~y~vi~ 96 (521)
..+....+|..|.+.+.- +-++| .|. ..+|.. ..++..|.-..+|+-+.
T Consensus 20 ~~k~~~~RC~~C~kkvgL-~~f~C-rCg-~~FCs~----HRy~e~H~C~fDyk~~g 68 (74)
T 1wfp_A 20 PPKSTATRCLSCNKKVGV-TGFKC-RCG-STFCGT----HRYPESHECQFDFKGVA 68 (74)
T ss_dssp CTTCCCCBCSSSCCBCTT-TCEEC-TTS-CEECTT----TCSTTTSCCCSCTTSCC
T ss_pred cCcccCccchhhcCcccc-cceEe-ccC-CEeccc----cCCCcCCCCcCchhHHh
Confidence 345566799999998764 57999 787 446754 33445677666776543
No 137
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=28.38 E-value=71 Score=26.39 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=44.8
Q ss_pred hCCCchHHHHHHHHHHHHHH-hCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 466 IRLAPPLYLRMQEVMSREIF-SGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 466 lrL~P~~YL~iK~~LirE~~-~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+|.|..|-.+..+...+.. -+|.++..+..+.+-++...++++.+-|.+.|||.
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~ 67 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 67 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEE
Confidence 57899999888776654333 45678988888889999999999999999999984
No 138
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=28.20 E-value=93 Score=25.98 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=42.6
Q ss_pred HHHHHh-CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 461 RLCCEI-RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 461 ~LC~~l-rL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
..+... +|.|..|..+..+. .+|. +..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~l~~~~~lt~~~~~iL~~l~-----~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 27 NRLGKLMNLSYLDFSILKATS-----EEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHHSCCHHHHHHHHHHH-----HSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHHH-----HCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 334555 99999987775542 3444 778888888999999999999999999984
No 139
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=28.13 E-value=54 Score=27.99 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=42.0
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 463 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 463 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+...+|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 37 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 37 EEISDMKTTELYAFLYVA-----LFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHSBHHHHHHHHHHH-----HHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345678888887765432 34568888888888999999999999999999984
No 140
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=27.76 E-value=56 Score=31.39 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=44.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFS-GNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~-~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+.+...++|.|.+|+.+..+-- . .+.++..+.-..+.+|...+.++.+-|.++|||.
T Consensus 24 ~~~l~~~~lt~~q~~vL~~L~~----~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~ 81 (250)
T 1p4x_A 24 KKVKPEVDMTIKEFILLTYLFH----QQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYIS 81 (250)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHS----CSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCE
T ss_pred HHHhhhcCCCHHHHHHHHHHHh----cCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 4455678899999988764431 2 2467777777778899999999999999999984
No 141
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=27.72 E-value=1e+02 Score=25.43 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=41.3
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 464 CEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 464 ~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
..++|.|..|..+..+. .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~~l~~~~~~iL~~l~-----~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 25 KQLGISLTRYSILQTLL-----KDAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 33588888887665432 34668888888888999999999999999999983
No 142
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=26.71 E-value=68 Score=28.06 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 458 AEKRLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 458 ~Ek~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.-.+....++|.|..|..+..+. ..++.++..+....+.++..-+.++.+-|++.|||.
T Consensus 41 ~~~~~l~~~glt~~q~~vL~~L~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 41 LIDHRLKPLELTQTHWVTLHNIH----QLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHHTTTTTCCHHHHHHHHHHH----HSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 33444567789999887665432 135668888888888999999999999999999984
No 143
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=24.98 E-value=48 Score=27.30 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=36.9
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----cCchhHHHHHHHHHHCCCCC
Q 009958 465 EIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 465 ~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~k----iD~~k~~~Iydfl~~~Gwi~ 520 (521)
..+|.|..+..|+-+. ..|.++..+....+. +...-+.++.+-|+++|||.
T Consensus 30 ~~~LT~~e~~VL~~L~-----~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~ 84 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIW-----SLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLS 84 (99)
T ss_dssp -CCCCCSCSHHHHHHH-----HHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCE
T ss_pred CCCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEE
Confidence 3578888888887443 244566666665554 35788999999999999984
No 144
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=24.46 E-value=86 Score=25.80 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=39.1
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 467 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 467 rL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 35 ~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 35 GLTPTQWAALVRLG-----ETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp CCCHHHHHHHHHHH-----HHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67777776664332 34578888888888999999999999999999984
No 145
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.46 E-value=65 Score=24.12 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=25.4
Q ss_pred CCcCCcccccccccCCCCeeEEcCCCCCcccchhhhhccc
Q 009958 42 GKRALYHCNYCNKDITGKIRIKCAVCPDFDLCIECFSVGV 81 (521)
Q Consensus 42 ~~~~~~~Cd~C~~~i~~~~ri~C~~C~d~dLC~~CF~~G~ 81 (521)
-+.....|.+|+. . ..|+|..|.-.-=.+.||-...
T Consensus 8 ~~~~~~~C~vC~~-~---~kY~CPrC~~~yCSl~C~k~Hk 43 (56)
T 2yqq_A 8 LKCSTVVCVICLE-K---PKYRCPACRVPYCSVVCFRKHK 43 (56)
T ss_dssp CCCCCCCCTTTCS-C---CSEECTTTCCEESSHHHHHHHH
T ss_pred cCCCCCccCcCcC-C---CeeeCCCCCCCeeCHHHHHHHH
Confidence 3345557999998 2 4689999984444589998643
No 146
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.41 E-value=28 Score=29.14 Aligned_cols=32 Identities=25% Similarity=0.798 Sum_probs=20.8
Q ss_pred CcccccccccC--CCCeeEEcCCCCC-cc---cchhhhh
Q 009958 46 LYHCNYCNKDI--TGKIRIKCAVCPD-FD---LCIECFS 78 (521)
Q Consensus 46 ~~~Cd~C~~~i--~~~~ri~C~~C~d-~d---LC~~CF~ 78 (521)
...|-.|+..+ .+ .+++|..|.. |. +|++|-.
T Consensus 32 ~~~CP~Cq~eL~~~g-~~~hC~~C~~~f~~~a~CPdC~q 69 (101)
T 2jne_A 32 ELHCPQCQHVLDQDN-GHARCRSCGEFIEMKALCPDCHQ 69 (101)
T ss_dssp CCBCSSSCSBEEEET-TEEEETTTCCEEEEEEECTTTCS
T ss_pred cccCccCCCcceecC-CEEECccccchhhccccCcchhh
Confidence 36788888776 34 4667888863 32 5777754
No 147
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=24.32 E-value=1.3e+02 Score=23.16 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCCCHHHhhhhhc-----cCchhHHHHHHHHHHCCC
Q 009958 477 QEVMSREIFSGNVNNKADAHHLFK-----IEPSKIDRVYDMLVKKGL 518 (521)
Q Consensus 477 K~~LirE~~~~G~lkk~~a~~l~k-----iD~~k~~~Iydfl~~~Gw 518 (521)
...||....+.|.++-.+....++ ++++.+..||++|...|.
T Consensus 11 ~k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 11 IKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 344666666778899877777664 788999999999999984
No 148
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=24.18 E-value=58 Score=27.44 Aligned_cols=52 Identities=6% Similarity=0.035 Sum_probs=40.6
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCC
Q 009958 468 LAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 519 (521)
Q Consensus 468 L~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi 519 (521)
+.|..|-.+++.|..=+..+|.++..+++.++.+----+-.|.+||-..||.
T Consensus 59 ~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred ECHHHHHHHHHHHHHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 4456677777777555557899999999999976666666899999999874
No 149
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.14 E-value=45 Score=20.40 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=10.6
Q ss_pred CCcCCcccccccccCC
Q 009958 42 GKRALYHCNYCNKDIT 57 (521)
Q Consensus 42 ~~~~~~~Cd~C~~~i~ 57 (521)
.....+.|+.|++...
T Consensus 5 ~~~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 5 SSGKTHLCDMCGKKFK 20 (36)
T ss_dssp CCCSSCBCTTTCCBCS
T ss_pred CCCCCeecCcCCCCcC
Confidence 3345678888887654
No 150
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=24.09 E-value=90 Score=26.01 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=36.3
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 466 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 466 lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
++|.|..|..+.-+ ..+| ++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 34 ~~lt~~~~~iL~~l-----~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 34 VALTNTQEHILMLL-----SEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp SCCCHHHHHHHHHH-----TTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHH-----HhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 45666666544322 2456 8888877888899999999999999999984
No 151
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=23.53 E-value=1e+02 Score=29.56 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=46.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEVMSREIFSGN-VNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~LirE~~~~G-~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
..+...++|.|.+|..+-.+. ..+| .++..+.-..+.++...+.++.+=|.+.|||.
T Consensus 148 ~~~~~~~gLt~~q~~vL~~L~----~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~ 205 (250)
T 1p4x_A 148 NIIKKHLTLSFVEFTILAIIT----SQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLI 205 (250)
T ss_dssp HHHHHHCSSCHHHHHHHHHHH----TTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHhhCCCCHHHHHHHHHHH----hCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 556779999999998876542 2333 58888888888999999999999999999984
No 152
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=23.21 E-value=30 Score=27.49 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=11.4
Q ss_pred HHHHHHHHhCccchHHHH
Q 009958 364 QDLKEARAAGCRTSAEAD 381 (521)
Q Consensus 364 ~~L~~yR~~Gi~tl~e~~ 381 (521)
.-|..|++.||+|+++++
T Consensus 65 ~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 65 AILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHTCCC-----
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 458899999999999874
No 153
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=23.00 E-value=1.2e+02 Score=25.74 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCC-------CChHHHHHHhCCCC----HHHHHHHHHhh
Q 009958 113 ILLLEGIEMYGL-------GNWAEIAEHVGTKT----KELCIEHYTNV 149 (521)
Q Consensus 113 l~LLeai~~~G~-------gnW~~Ia~~vgtkt----~~ec~~hy~~~ 149 (521)
..|..+|...|- ..|.+||..+|-.+ ....+.||.++
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 456677777761 37999999998432 45677888765
No 154
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=23.00 E-value=59 Score=29.90 Aligned_cols=55 Identities=9% Similarity=-0.106 Sum_probs=43.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 461 RLCCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 461 ~LC~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
..+..++|.|.+|..+.-+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 39 ~~l~~~gLt~~q~~iL~~L~-----~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~ 93 (207)
T 2fxa_A 39 QWLKPYDLNINEHHILWIAY-----QLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLR 93 (207)
T ss_dssp HHTGGGTCCHHHHHHHHHHH-----HHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34466789999998775432 23567777888888999999999999999999984
No 155
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.99 E-value=36 Score=21.01 Aligned_cols=15 Identities=33% Similarity=0.959 Sum_probs=9.6
Q ss_pred CcCCcccccccccCC
Q 009958 43 KRALYHCNYCNKDIT 57 (521)
Q Consensus 43 ~~~~~~Cd~C~~~i~ 57 (521)
....+.|+.|++...
T Consensus 6 ~~k~~~C~~C~k~f~ 20 (36)
T 2els_A 6 SGKIFTCEYCNKVFK 20 (36)
T ss_dssp CCCCEECTTTCCEES
T ss_pred CCCCEECCCCCceeC
Confidence 345677888876543
No 156
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=22.82 E-value=1e+02 Score=23.54 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----cCchhHHHHHHHHHHCCCCC
Q 009958 467 RLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 467 rL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~k----iD~~k~~~Iydfl~~~Gwi~ 520 (521)
+|.|..+..++-+. .+|.++..+....+. +....+.++.+-|+++|||.
T Consensus 6 ~lt~~e~~vL~~L~-----~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 6 QISDAELEVMKVIW-----KHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp CCCHHHHHHHHHHH-----TSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHH-----cCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 45566655554221 356777766666654 56789999999999999984
No 157
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=22.70 E-value=1.2e+02 Score=29.75 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=37.4
Q ss_pred CCCCCchhHHHHHHHHHHhC--CCChHHHHHHhC--CCCHHHHHHHHHhh
Q 009958 104 CPDWNADDEILLLEGIEMYG--LGNWAEIAEHVG--TKTKELCIEHYTNV 149 (521)
Q Consensus 104 ~~~Wta~Eel~LLeai~~~G--~gnW~~Ia~~vg--tkt~~ec~~hy~~~ 149 (521)
..+||..|-..|+.++..|| .+.|++|+.--. .|+.+.++.-|..+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 46799999999999999999 578999987533 68888877666554
No 158
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=22.47 E-value=88 Score=25.33 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=24.4
Q ss_pred HHHHHHHHHhC-C------CChHHHHHHhCCC---C-HHHHHHHHHhh
Q 009958 113 ILLLEGIEMYG-L------GNWAEIAEHVGTK---T-KELCIEHYTNV 149 (521)
Q Consensus 113 l~LLeai~~~G-~------gnW~~Ia~~vgtk---t-~~ec~~hy~~~ 149 (521)
..|-.+|...| + ..|.+||..+|-. + ..+.+.||.++
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 44555665554 1 3799999999832 2 45677777765
No 159
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=22.39 E-value=1.9e+02 Score=27.30 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHHHHHhCCCchHHHHHHHH-----HHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCC
Q 009958 460 KRLCCEIRLAPPLYLRMQEV-----MSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGL 518 (521)
Q Consensus 460 k~LC~~lrL~P~~YL~iK~~-----LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gw 518 (521)
.+++..+++.+..--.+-.+ =+.+.+..|.++...|+.|..++......+++.++..||
T Consensus 138 ~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~g~is~~~A~~L~~l~~~~q~~l~~~i~~~~l 201 (230)
T 1vz0_A 138 EEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGL 201 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 35667777766432222211 144566789999999999999998877779999998887
No 160
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.25 E-value=28 Score=27.31 Aligned_cols=14 Identities=21% Similarity=0.619 Sum_probs=11.3
Q ss_pred CcCCcccccccccC
Q 009958 43 KRALYHCNYCNKDI 56 (521)
Q Consensus 43 ~~~~~~Cd~C~~~i 56 (521)
....|.|..|+..+
T Consensus 25 ~~v~Y~C~~CG~~~ 38 (70)
T 1twf_L 25 ATLKYICAECSSKL 38 (70)
T ss_dssp CCCCEECSSSCCEE
T ss_pred ceEEEECCCCCCcc
Confidence 45788999999883
No 161
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.85 E-value=1.2e+02 Score=24.98 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCC-------CChHHHHHHhCCCC----HHHHHHHHHhh
Q 009958 113 ILLLEGIEMYGL-------GNWAEIAEHVGTKT----KELCIEHYTNV 149 (521)
Q Consensus 113 l~LLeai~~~G~-------gnW~~Ia~~vgtkt----~~ec~~hy~~~ 149 (521)
..|-.+|...|- ..|.+||..+|--+ ....+.||.++
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 455567766661 37999999998433 45677778765
No 162
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=21.74 E-value=1.1e+02 Score=26.43 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=40.8
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 466 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 466 lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+|.|..|..+..+- .+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 41 ~~lt~~~~~iL~~L~-----~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 41 ENITIPQFRTLVILS-----NHGPINLATLATLLGVQPSATGRMVDRLVGAELID 90 (168)
T ss_dssp SSCCHHHHHHHHHHH-----HHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHH-----HcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 488888887775432 34567888888888999999999999999999984
No 163
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=21.53 E-value=97 Score=25.41 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=36.4
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----cCchhHHHHHHHHHHCCCCC
Q 009958 466 IRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFK----IEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 466 lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~k----iD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+|.|.+|..+.-+- .+|.++..+....+. ++..-+.++.+=|.++|||.
T Consensus 6 ~~Lt~~q~~vL~~L~-----~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (126)
T 1sd4_A 6 VEISMAEWDVMNIIW-----DKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIK 59 (126)
T ss_dssp CCCCHHHHHHHHHHH-----HSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHH-----hcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceE
Confidence 467888887776432 345566655555554 57999999999999999984
No 164
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=21.31 E-value=95 Score=25.14 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=30.1
Q ss_pred HHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCCC
Q 009958 484 IFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 484 ~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
.+..| ..+.+.-..+.+....++++.++|.++|+|.
T Consensus 16 ~i~~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 16 ACKSG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HHTTC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 33456 7777777778899999999999999999984
No 165
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=21.18 E-value=50 Score=26.27 Aligned_cols=56 Identities=7% Similarity=-0.046 Sum_probs=39.6
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCchhHHHHHHHHHHCCCC
Q 009958 463 CCEIRLAPPLYLRMQEVMSREIFSGNVNNKADAHHLFKIEPSKIDRVYDMLVKKGLA 519 (521)
Q Consensus 463 C~~lrL~P~~YL~iK~~LirE~~~~G~lkk~~a~~l~kiD~~k~~~Iydfl~~~Gwi 519 (521)
+..+.|....|..+..++- ..-.++.++..+.-..+.++..-+.++.+-|.+.|||
T Consensus 5 ~~k~~l~~~~~~iL~~l~~-~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 5 RIKLLFKEKALEILMTIYY-ESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CHHHHSCHHHHHHHHHHHH-HHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCchhHHHHHHHHHH-ccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 3455666666666654432 1112224777788888899999999999999999998
No 166
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=20.89 E-value=1.3e+02 Score=25.79 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCC-------CChHHHHHHhCCCC----HHHHHHHHHhh
Q 009958 113 ILLLEGIEMYGL-------GNWAEIAEHVGTKT----KELCIEHYTNV 149 (521)
Q Consensus 113 l~LLeai~~~G~-------gnW~~Ia~~vgtkt----~~ec~~hy~~~ 149 (521)
..|..+|...|- ..|.+||..+|--+ ....+.||.++
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 456667777661 37999999999433 35667778765
No 167
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.21 E-value=1.2e+02 Score=23.24 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCCCHHHhhhhh-----ccCchhHHHHHHHHHHCCCCC
Q 009958 488 NVNNKADAHHLF-----KIEPSKIDRVYDMLVKKGLAP 520 (521)
Q Consensus 488 G~lkk~~a~~l~-----kiD~~k~~~Iydfl~~~Gwi~ 520 (521)
+.++..+....+ .+...-+.+..+.|++.|+|.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 688888887777 789999999999999999974
Done!