Query 009960
Match_columns 521
No_of_seqs 231 out of 1834
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 19:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 1E-103 3E-108 833.6 54.0 481 1-498 56-536 (539)
2 PLN02991 oxidoreductase 100.0 2E-103 4E-108 827.8 52.9 481 1-498 55-535 (543)
3 PLN02792 oxidoreductase 100.0 7E-103 1E-107 824.9 53.3 485 1-498 43-528 (536)
4 PLN00044 multi-copper oxidase- 100.0 1E-102 3E-107 825.6 53.1 494 1-498 56-559 (596)
5 PLN02354 copper ion binding / 100.0 3E-102 6E-107 824.4 52.5 488 1-499 54-544 (552)
6 PLN02168 copper ion binding / 100.0 5E-102 1E-106 818.6 52.8 480 1-494 53-542 (545)
7 KOG1263 Multicopper oxidases [ 100.0 1.3E-95 3E-100 763.7 52.7 496 1-500 55-562 (563)
8 TIGR03389 laccase laccase, pla 100.0 3E-95 7E-100 776.4 54.6 481 1-493 30-539 (539)
9 PLN02191 L-ascorbate oxidase 100.0 7.3E-93 1.6E-97 757.6 52.5 476 1-498 50-566 (574)
10 TIGR03388 ascorbase L-ascorbat 100.0 3.1E-92 6.7E-97 752.7 52.8 472 1-494 28-539 (541)
11 PLN02604 oxidoreductase 100.0 1.2E-91 2.5E-96 750.2 53.6 476 1-497 51-565 (566)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2E-90 4.3E-95 736.6 50.5 460 1-477 35-535 (538)
13 PRK10965 multicopper oxidase; 100.0 1.6E-75 3.6E-80 617.0 41.3 414 1-474 73-523 (523)
14 TIGR01480 copper_res_A copper- 100.0 1.3E-74 2.7E-79 614.4 43.7 405 1-474 72-587 (587)
15 PRK10883 FtsI repressor; Provi 100.0 4.4E-73 9.5E-78 593.7 40.6 378 1-475 73-469 (471)
16 COG2132 SufI Putative multicop 100.0 7.9E-59 1.7E-63 488.6 39.0 386 1-474 60-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 7.9E-44 1.7E-48 354.2 20.4 235 1-258 55-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 6.5E-32 1.4E-36 229.8 7.7 94 1-94 22-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 1.8E-30 3.9E-35 229.8 11.3 108 368-475 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 100.0 1.1E-27 2.5E-32 216.6 15.8 151 106-256 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.7 4.6E-18 9.9E-23 150.1 9.3 90 2-92 49-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 4E-15 8.6E-20 148.5 24.3 245 138-475 47-297 (311)
23 TIGR01480 copper_res_A copper- 99.5 5.2E-13 1.1E-17 143.2 19.0 218 5-236 260-573 (587)
24 TIGR03389 laccase laccase, pla 99.2 1E-09 2.2E-14 118.3 20.3 239 139-459 23-264 (539)
25 PLN02835 oxidoreductase 99.2 2.2E-09 4.7E-14 115.0 21.6 225 139-456 49-276 (539)
26 PRK10965 multicopper oxidase; 99.1 4.3E-09 9.4E-14 112.3 20.6 224 4-236 222-509 (523)
27 PLN02354 copper ion binding / 99.1 5.7E-09 1.2E-13 111.9 20.7 234 139-458 47-283 (552)
28 PLN02991 oxidoreductase 99.1 6.6E-09 1.4E-13 110.9 20.5 223 139-453 48-273 (543)
29 PLN02168 copper ion binding / 99.1 9E-09 1.9E-13 110.0 21.2 220 139-449 46-267 (545)
30 PLN02792 oxidoreductase 99.0 1.4E-08 3E-13 108.5 20.4 227 139-456 36-267 (536)
31 TIGR03388 ascorbase L-ascorbat 99.0 2.2E-08 4.7E-13 108.0 19.7 229 6-236 204-510 (541)
32 PRK10883 FtsI repressor; Provi 99.0 6.1E-08 1.3E-12 102.5 21.7 227 139-457 66-295 (471)
33 PLN02604 oxidoreductase 98.9 4.1E-09 8.9E-14 113.9 11.1 90 374-477 56-146 (566)
34 COG2132 SufI Putative multicop 98.9 2.1E-08 4.4E-13 106.2 16.0 217 7-236 201-435 (451)
35 PF07731 Cu-oxidase_2: Multico 98.9 2.3E-09 4.9E-14 94.6 5.8 88 4-93 33-136 (138)
36 PLN00044 multi-copper oxidase- 98.9 1.4E-07 3E-12 101.6 19.9 237 139-454 49-291 (596)
37 TIGR03390 ascorbOXfungal L-asc 98.8 2.3E-07 4.9E-12 99.9 20.6 242 139-457 28-281 (538)
38 TIGR03096 nitroso_cyanin nitro 98.7 2.6E-08 5.7E-13 85.2 7.4 63 2-79 58-122 (135)
39 PF07732 Cu-oxidase_3: Multico 98.7 5.2E-08 1.1E-12 83.0 8.0 90 373-476 26-116 (117)
40 PLN02191 L-ascorbate oxidase 98.7 1.3E-06 2.8E-11 94.6 20.0 253 139-456 43-301 (574)
41 KOG1263 Multicopper oxidases [ 98.5 7.9E-06 1.7E-10 87.3 20.6 227 139-458 48-286 (563)
42 TIGR02656 cyanin_plasto plasto 98.3 2.2E-06 4.8E-11 70.8 8.3 82 4-92 16-99 (99)
43 PF00394 Cu-oxidase: Multicopp 98.2 5.2E-06 1.1E-10 75.0 8.7 92 372-474 59-156 (159)
44 PRK02710 plastocyanin; Provisi 98.1 1.5E-05 3.3E-10 68.1 8.9 74 4-92 46-119 (119)
45 PF00127 Copper-bind: Copper b 98.1 7.9E-06 1.7E-10 67.5 6.1 77 4-92 16-99 (99)
46 PF13473 Cupredoxin_1: Cupredo 98.0 1.2E-05 2.7E-10 67.0 6.6 70 5-91 35-104 (104)
47 TIGR02657 amicyanin amicyanin. 98.0 3.9E-05 8.4E-10 61.1 8.2 74 4-92 10-83 (83)
48 TIGR03095 rusti_cyanin rusticy 97.9 8.8E-05 1.9E-09 65.7 9.8 89 373-474 52-148 (148)
49 PRK02888 nitrous-oxide reducta 97.6 0.00015 3.2E-09 77.5 8.2 80 5-94 555-635 (635)
50 TIGR02656 cyanin_plasto plasto 97.5 0.00035 7.6E-09 57.6 7.7 82 374-474 18-99 (99)
51 TIGR02375 pseudoazurin pseudoa 97.5 0.00056 1.2E-08 57.8 8.8 75 4-94 14-89 (116)
52 COG3794 PetE Plastocyanin [Ene 97.5 0.00062 1.4E-08 58.1 8.5 75 5-93 54-128 (128)
53 TIGR03096 nitroso_cyanin nitro 97.4 0.00075 1.6E-08 58.1 7.9 59 374-459 62-120 (135)
54 TIGR03094 sulfo_cyanin sulfocy 97.2 0.0026 5.6E-08 56.8 9.6 86 5-94 85-187 (195)
55 PF06525 SoxE: Sulfocyanin (So 97.1 0.0021 4.5E-08 58.6 8.5 90 4-94 85-188 (196)
56 TIGR03102 halo_cynanin halocya 97.0 0.0042 9.1E-08 52.4 8.3 72 5-92 42-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 97.0 0.0036 7.8E-08 52.0 7.8 62 374-464 36-97 (104)
58 PF00127 Copper-bind: Copper b 96.4 0.024 5.3E-07 46.6 8.9 82 374-474 18-99 (99)
59 TIGR02375 pseudoazurin pseudoa 96.1 0.069 1.5E-06 45.2 10.0 61 437-511 54-114 (116)
60 PRK02710 plastocyanin; Provisi 96.0 0.031 6.7E-07 47.7 7.8 71 375-474 49-119 (119)
61 PRK02888 nitrous-oxide reducta 95.6 0.048 1E-06 58.7 8.8 74 375-475 557-634 (635)
62 COG4454 Uncharacterized copper 94.7 0.11 2.4E-06 45.5 6.9 93 375-474 65-157 (158)
63 TIGR02657 amicyanin amicyanin. 94.1 0.25 5.5E-06 39.0 7.2 72 374-474 12-83 (83)
64 TIGR03102 halo_cynanin halocya 93.8 0.43 9.4E-06 40.3 8.5 72 375-474 44-115 (115)
65 PF00116 COX2: Cytochrome C ox 93.6 0.35 7.6E-06 41.2 7.8 74 4-91 45-119 (120)
66 TIGR02695 azurin azurin. Azuri 92.8 0.46 1E-05 40.3 6.9 85 5-90 16-124 (125)
67 PF00116 COX2: Cytochrome C ox 91.6 2.4 5.2E-05 36.1 10.2 74 372-473 45-119 (120)
68 TIGR02866 CoxB cytochrome c ox 90.9 0.82 1.8E-05 42.8 7.3 77 373-477 117-194 (201)
69 COG4454 Uncharacterized copper 90.7 0.71 1.5E-05 40.6 6.1 88 2-93 60-158 (158)
70 COG3794 PetE Plastocyanin [Ene 90.4 1.6 3.4E-05 37.5 7.8 73 375-475 56-128 (128)
71 PRK10378 inactive ferrous ion 88.0 2.6 5.5E-05 43.2 8.7 74 5-95 44-119 (375)
72 PF06525 SoxE: Sulfocyanin (So 86.7 14 0.0003 34.1 11.8 95 374-475 87-187 (196)
73 COG1622 CyoA Heme/copper-type 85.8 3.1 6.6E-05 40.2 7.5 77 5-95 137-214 (247)
74 COG4263 NosZ Nitrous oxide red 85.1 1.3 2.8E-05 45.5 4.8 43 50-93 594-637 (637)
75 PF12690 BsuPI: Intracellular 84.4 8.2 0.00018 30.4 8.2 66 167-233 3-82 (82)
76 COG1622 CyoA Heme/copper-type 84.1 3.4 7.4E-05 39.9 7.0 79 372-478 136-215 (247)
77 TIGR02866 CoxB cytochrome c ox 81.4 5 0.00011 37.6 6.9 76 5-94 117-193 (201)
78 TIGR02695 azurin azurin. Azuri 81.3 12 0.00026 31.9 8.3 78 157-234 15-111 (125)
79 TIGR01433 CyoA cytochrome o ub 79.6 4 8.7E-05 38.9 5.7 76 374-477 140-216 (226)
80 PF12690 BsuPI: Intracellular 77.3 6.9 0.00015 30.8 5.5 60 14-73 3-80 (82)
81 MTH00140 COX2 cytochrome c oxi 77.0 6.1 0.00013 37.8 6.1 78 372-477 139-217 (228)
82 MTH00129 COX2 cytochrome c oxi 72.9 11 0.00024 36.1 6.7 78 372-477 139-217 (230)
83 PTZ00047 cytochrome c oxidase 72.3 14 0.0003 33.0 6.6 76 374-477 74-150 (162)
84 MTH00098 COX2 cytochrome c oxi 71.3 12 0.00026 35.7 6.5 77 373-477 140-217 (227)
85 TIGR03094 sulfo_cyanin sulfocy 71.0 32 0.00069 31.3 8.6 96 373-475 85-186 (195)
86 PF07705 CARDB: CARDB; InterP 70.7 45 0.00098 26.4 9.2 66 161-235 14-83 (101)
87 TIGR01432 QOXA cytochrome aa3 70.4 8.9 0.00019 36.3 5.5 76 374-477 131-207 (217)
88 MTH00047 COX2 cytochrome c oxi 68.8 28 0.00061 32.3 8.2 76 374-477 117-193 (194)
89 PF01835 A2M_N: MG2 domain; I 66.6 19 0.00041 29.0 6.0 68 162-235 11-85 (99)
90 PF10633 NPCBM_assoc: NPCBM-as 65.9 42 0.00092 25.8 7.6 64 162-234 1-74 (78)
91 MTH00185 COX2 cytochrome c oxi 64.6 24 0.00052 33.8 7.1 77 372-476 139-216 (230)
92 COG2967 ApaG Uncharacterized p 64.6 7.7 0.00017 32.5 3.2 55 16-70 33-95 (126)
93 PF04151 PPC: Bacterial pre-pe 63.8 40 0.00088 25.2 7.0 65 158-234 5-69 (70)
94 MTH00117 COX2 cytochrome c oxi 63.4 21 0.00045 34.1 6.5 78 372-477 139-217 (227)
95 MTH00008 COX2 cytochrome c oxi 62.7 25 0.00054 33.6 6.9 77 373-477 140-217 (228)
96 PRK10378 inactive ferrous ion 61.4 56 0.0012 33.6 9.4 72 140-234 33-104 (375)
97 MTH00023 COX2 cytochrome c oxi 59.7 28 0.0006 33.5 6.6 77 373-477 151-228 (240)
98 MTH00051 COX2 cytochrome c oxi 59.4 27 0.00059 33.5 6.5 78 372-477 143-221 (234)
99 PRK05461 apaG CO2+/MG2+ efflux 59.3 13 0.00029 31.9 3.9 47 15-61 33-85 (127)
100 PF05506 DUF756: Domain of unk 58.1 70 0.0015 25.3 7.8 64 3-74 7-73 (89)
101 MTH00076 COX2 cytochrome c oxi 57.7 27 0.00058 33.4 6.1 77 373-477 140-217 (228)
102 PF05938 Self-incomp_S1: Plant 56.6 31 0.00066 28.6 5.7 69 16-93 2-70 (110)
103 PF07691 PA14: PA14 domain; I 54.6 93 0.002 26.6 8.8 62 159-225 53-121 (145)
104 MTH00139 COX2 cytochrome c oxi 52.1 41 0.00089 32.1 6.4 78 372-477 139-217 (226)
105 MTH00154 COX2 cytochrome c oxi 51.6 47 0.001 31.7 6.7 77 373-477 140-217 (227)
106 PF14874 PapD-like: Flagellar- 49.3 1.4E+02 0.003 24.0 8.9 58 161-230 15-81 (102)
107 PF04379 DUF525: Protein of un 48.2 12 0.00027 30.0 1.8 56 15-70 16-79 (90)
108 PF14344 DUF4397: Domain of un 48.1 1.6E+02 0.0035 24.5 10.5 21 169-189 3-24 (122)
109 MTH00038 COX2 cytochrome c oxi 47.4 53 0.0012 31.4 6.4 77 373-477 140-217 (229)
110 MTH00027 COX2 cytochrome c oxi 45.7 55 0.0012 31.9 6.2 77 373-477 174-251 (262)
111 MTH00080 COX2 cytochrome c oxi 45.2 70 0.0015 30.6 6.7 78 372-477 142-220 (231)
112 smart00758 PA14 domain in bact 43.9 1.4E+02 0.0031 25.3 8.1 63 160-227 52-115 (136)
113 MTH00168 COX2 cytochrome c oxi 43.2 61 0.0013 30.9 6.0 78 372-477 139-217 (225)
114 PRK10525 cytochrome o ubiquino 42.1 65 0.0014 32.3 6.2 73 374-474 152-225 (315)
115 PF11614 FixG_C: IG-like fold 40.5 94 0.002 26.0 6.3 49 167-223 34-83 (118)
116 COG3354 FlaG Putative archaeal 39.2 2.7E+02 0.0058 24.4 9.1 83 139-235 51-142 (154)
117 PF04379 DUF525: Protein of un 38.4 74 0.0016 25.5 4.9 50 167-219 15-68 (90)
118 PRK05659 sulfur carrier protei 35.6 17 0.00037 27.0 0.8 29 192-220 33-61 (66)
119 PF14524 Wzt_C: Wzt C-terminal 35.4 1.2E+02 0.0026 25.7 6.3 72 161-235 30-107 (142)
120 cd00918 Der-p2_like Several gr 35.0 1.8E+02 0.0038 24.7 7.0 58 8-65 23-88 (120)
121 PF10989 DUF2808: Protein of u 33.7 47 0.001 29.2 3.4 26 435-460 99-128 (146)
122 cd00916 Npc2_like Niemann-Pick 33.2 1.6E+02 0.0035 25.0 6.5 58 8-65 25-92 (123)
123 PF14392 zf-CCHC_4: Zinc knuck 32.7 74 0.0016 22.1 3.6 41 425-465 4-45 (49)
124 PF11142 DUF2917: Protein of u 31.7 1.3E+02 0.0029 22.2 5.0 32 160-197 2-33 (63)
125 COG1470 Predicted membrane pro 30.6 2.4E+02 0.0053 29.8 8.2 73 158-237 389-469 (513)
126 PF14326 DUF4384: Domain of un 30.4 2.6E+02 0.0056 21.7 8.1 17 162-178 3-19 (83)
127 TIGR03079 CH4_NH3mon_ox_B meth 30.3 1.8E+02 0.0039 29.7 7.0 77 14-90 285-396 (399)
128 PRK05461 apaG CO2+/MG2+ efflux 29.9 1.5E+02 0.0032 25.5 5.6 50 167-219 32-85 (127)
129 PF04744 Monooxygenase_B: Mono 29.9 1.1E+02 0.0025 31.1 5.6 77 14-90 266-377 (381)
130 MTH00047 COX2 cytochrome c oxi 29.7 3.2E+02 0.007 25.3 8.4 74 7-94 118-192 (194)
131 PF14016 DUF4232: Protein of u 27.9 3.8E+02 0.0082 22.8 8.2 54 167-223 21-81 (131)
132 MTH00140 COX2 cytochrome c oxi 27.0 2.6E+02 0.0055 26.7 7.4 76 5-94 140-216 (228)
133 KOG1554 COP9 signalosome, subu 25.5 45 0.00098 32.4 1.9 25 70-94 134-173 (347)
134 PF05506 DUF756: Domain of unk 22.9 3.8E+02 0.0081 21.0 8.6 58 166-234 20-77 (89)
135 KOG4063 Major epididymal secre 21.2 77 0.0017 27.9 2.3 18 48-65 106-123 (158)
136 TIGR02745 ccoG_rdxA_fixG cytoc 20.3 2.9E+02 0.0062 29.2 6.8 49 167-223 349-398 (434)
137 TIGR01433 CyoA cytochrome o ub 20.1 2.8E+02 0.006 26.4 6.2 60 158-236 139-198 (226)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.2e-103 Score=833.64 Aligned_cols=481 Identities=50% Similarity=0.863 Sum_probs=387.8
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQ 80 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q 80 (521)
|+|||+||+++||+|+|+|+|+|+++++|||||++|..+++|||++++||||+||++|+|+|++++++||||||||.+.|
T Consensus 56 ~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q 135 (539)
T PLN02835 56 QFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFH 135 (539)
T ss_pred cCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccch
Confidence 68999999999999999999999999999999999999999999999999999999999999987789999999999999
Q ss_pred hcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCCCCCceE
Q 009960 81 KAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMTREPESF 160 (521)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~~ 160 (521)
+++||+|+|||++++..+.+++.+|+|++|+++||+++...++...+..+. ..++++.+||||+.. +.+
T Consensus 136 ~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~--~~~~~d~~liNG~~~---------~~~ 204 (539)
T PLN02835 136 KAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLDSGK--VLPFPDGVLINGQTQ---------STF 204 (539)
T ss_pred hcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHhhcCC--CCCCCceEEEccccC---------ceE
Confidence 999999999998765555566678999999999999998766655554443 456889999999988 789
Q ss_pred EEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEeccccccC
Q 009960 161 TVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPKLIST 240 (521)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~ 240 (521)
+|++|++|||||||+|....+.|+|+||+|+||++||.+++|..+++|.|++||||||+|++++.+|+|||++.....+.
T Consensus 205 ~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~ 284 (539)
T PLN02835 205 SGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQ 284 (539)
T ss_pred EECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999986533222
Q ss_pred CCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccccccCcceEEEEeccccc
Q 009960 241 NDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSNVTLSQTFILQGSKAE 320 (521)
Q Consensus 241 ~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~ 320 (521)
.....|+|+|+++..+.+.++|..|.. +...+...+....+.+.+....|.+...........++++.+......
T Consensus 285 ----~~~~~ail~Y~~~~~~~~~~~p~~p~~-~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (539)
T PLN02835 285 ----ILTATAVLHYSNSRTPASGPLPALPSG-ELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL 359 (539)
T ss_pred ----CcceEEEEEECCCCCCCCCCCCCCCcc-ccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccc
Confidence 356789999988643222223332211 111122222222223333333333322222222234555555432222
Q ss_pred cCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEecCCCcEEEEEEEcCCCCccceeec
Q 009960 321 ISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTGNHKGWIELVFNNNLDVIDSWHLD 400 (521)
Q Consensus 321 ~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~HP~HlH 400 (521)
.++...|+|||.+|..|++|+|++.++ +.+++++.+.+...+.+...+.++.++.++.|++|||+|+|.+...||||||
T Consensus 360 ~~g~~~w~iN~~s~~~p~~P~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLH 438 (539)
T PLN02835 360 INGKQRYAVNGVSYVNSDTPLKLADYF-GIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLD 438 (539)
T ss_pred cCCeEEEEECCcccCCCCCChhhhhhh-cCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCC
Confidence 245678999999999999998877665 5566666443322222222445688899999999999999999889999999
Q ss_pred CcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeEEeecchhhhhccceEEEEEeCCCCCC
Q 009960 401 GFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHNSDPNP 480 (521)
Q Consensus 401 G~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~ 480 (521)
||+||||++|.|.|++.....+|+.||++||||.|+++||++|||+|||||+|+|||||++|+..||++++.|+++.+..
T Consensus 439 Gh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~ 518 (539)
T PLN02835 439 GYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSL 518 (539)
T ss_pred CccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCcc
Confidence 99999999999999866555689999999999999999999999999999999999999999999999999999887666
Q ss_pred CCCCCCCCChhccccccc
Q 009960 481 AKERPPPENLLLCGQCKF 498 (521)
Q Consensus 481 ~~~~~~p~~~~~c~~~~~ 498 (521)
.+..++|++++.||..++
T Consensus 519 ~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 519 ANEYDIPDNALLCGKAIG 536 (539)
T ss_pred ccccCCCccccccccCcc
Confidence 678889999999985544
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.9e-103 Score=827.81 Aligned_cols=481 Identities=51% Similarity=0.882 Sum_probs=392.1
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQ 80 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q 80 (521)
|+|||+||+++||+|+|+|+|+|+++++|||||++|..+++|||++++||||+||++|+|+|++++++||||||||.+.|
T Consensus 55 ~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q 134 (543)
T PLN02991 55 KFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFH 134 (543)
T ss_pred CCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchh
Confidence 69999999999999999999999999999999999999999999998899999999999999987789999999999999
Q ss_pred hcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCCCCCceE
Q 009960 81 KAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMTREPESF 160 (521)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~~ 160 (521)
+.+||+|+|||++++.++.++..+++|++|+|+||+++...++...+..+ +..+++|.+||||+... +.+
T Consensus 135 ~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~~~~--~~~~~~d~~liNG~~~~--------~~~ 204 (543)
T PLN02991 135 KAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQLDNG--GKLPLPDGILINGRGSG--------ATL 204 (543)
T ss_pred hhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHhhcC--CCCCCCCEEEEccCCCC--------ceE
Confidence 99999999999987666666667789999999999999876655444333 25568999999999763 689
Q ss_pred EEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEeccccccC
Q 009960 161 TVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPKLIST 240 (521)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~ 240 (521)
+|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++++|+||||+...+...
T Consensus 205 ~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~ 284 (543)
T PLN02991 205 NIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSK 284 (543)
T ss_pred EECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998643322
Q ss_pred CCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccccccCcceEEEEeccccc
Q 009960 241 NDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSNVTLSQTFILQGSKAE 320 (521)
Q Consensus 241 ~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~ 320 (521)
.....|||+|+++..+...+.|..|. +..++.+.....+..+.+....+.|...+.......++++.+......
T Consensus 285 ----~~~~~AIl~Y~g~~~~~~~~~p~~p~--~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 358 (543)
T PLN02991 285 ----ILITTGVLHYSNSAGPVSGPIPDGPI--QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAGN 358 (543)
T ss_pred ----CcceEEEEEeCCCCCCCCCCCCCCCc--cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeecccc
Confidence 35678999999864322112332221 222222222222334443333333433222222334444444332211
Q ss_pred cCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEecCCCcEEEEEEEcCCCCccceeec
Q 009960 321 ISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTGNHKGWIELVFNNNLDVIDSWHLD 400 (521)
Q Consensus 321 ~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~HP~HlH 400 (521)
.++...|+|||.+|..|++|+|++.++ +++|+|+.+..+..+.+......+.++.++.|++|||+|+|.+...||||||
T Consensus 359 ~~g~~~~~iN~~s~~~p~~p~L~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLH 437 (543)
T PLN02991 359 IEGKQRYAVNSASFYPADTPLKLADYF-KIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLD 437 (543)
T ss_pred cCceEEEEECCCccCCCCCChhhhhhh-cccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeC
Confidence 245678999999999999998877666 6778887664444443333445677889999999999999998889999999
Q ss_pred CcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeEEeecchhhhhccceEEEEEeCCCCCC
Q 009960 401 GFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHNSDPNP 480 (521)
Q Consensus 401 G~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~ 480 (521)
||+||||++|.|.|++.....||+.||++|||+.||++||++|||++||||+|+|||||..|+..||.+++.|.++.+..
T Consensus 438 Gh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~ 517 (543)
T PLN02991 438 GYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSL 517 (543)
T ss_pred CcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCcc
Confidence 99999999999999876666899999999999999999999999999999999999999999999999999999888777
Q ss_pred CCCCCCCCChhccccccc
Q 009960 481 AKERPPPENLLLCGQCKF 498 (521)
Q Consensus 481 ~~~~~~p~~~~~c~~~~~ 498 (521)
+++.++|++++.||..++
T Consensus 518 ~~~~~~P~~~~~Cg~~~~ 535 (543)
T PLN02991 518 RDEYLIPKNALLCGRATG 535 (543)
T ss_pred ccccCCCcccCccccCCC
Confidence 778899999999975444
No 3
>PLN02792 oxidoreductase
Probab=100.00 E-value=6.8e-103 Score=824.95 Aligned_cols=485 Identities=47% Similarity=0.804 Sum_probs=395.4
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQ 80 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q 80 (521)
|+|||+||+++||+|+|+|+|+|+++++|||||++|..++|+||++++||||+||++|+|+|++++|+||||||||.+.|
T Consensus 43 q~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q 122 (536)
T PLN02792 43 QFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQ 122 (536)
T ss_pred CCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchh
Confidence 69999999999999999999999999999999999999999999998899999999999999987789999999999999
Q ss_pred hcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCCCCCceE
Q 009960 81 KAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMTREPESF 160 (521)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~~ 160 (521)
+++||+|+|||++++..+.+++..++|++++|+||+++....+...+..+. ....++|.+||||++... .+.+
T Consensus 123 ~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~~g~-~~~~~~d~~liNG~~~~~------~~~~ 195 (536)
T PLN02792 123 KAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILDGGR-KLPLMPDGVMINGQGVSY------VYSI 195 (536)
T ss_pred hhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhhccC-cCCCCCCEEEEeccCCCC------cceE
Confidence 999999999999866555666667899999999999988766655554442 112378999999998642 2689
Q ss_pred EEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEeccccccC
Q 009960 161 TVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPKLIST 240 (521)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~ 240 (521)
+|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++++|+|||++...+.+.
T Consensus 196 ~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~ 275 (536)
T PLN02792 196 TVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAA 275 (536)
T ss_pred EECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999998654332
Q ss_pred CCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccccccCcceEEEEeccccc
Q 009960 241 NDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSNVTLSQTFILQGSKAE 320 (521)
Q Consensus 241 ~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~ 320 (521)
...+.|||+|+++.... ...|..|...+..++.+....++..+.+..+.+.|...+.+....+++++.+......
T Consensus 276 ----~~~~~ail~Y~g~~~~~-~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 350 (536)
T PLN02792 276 ----KVLVSSTLHYSNSKGHK-IIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAAL 350 (536)
T ss_pred ----CCceEEEEEECCCCCCC-CCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccc
Confidence 35678999998864321 1122223233344433333333444443333444444333333334555554432222
Q ss_pred cCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCC-CCcccceeEEecCCCcEEEEEEEcCCCCccceee
Q 009960 321 ISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVN-DEATRGVSVVTGNHKGWIELVFNNNLDVIDSWHL 399 (521)
Q Consensus 321 ~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~g~~v~~vi~N~~~~~HP~Hl 399 (521)
.++...|+|||.+|..|++|+|++.++ +++|+++.+.++..|.. +....++.++.++.|++|||+|+|.....|||||
T Consensus 351 ~~~~~~~~iN~~s~~~p~~p~L~a~~~-~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HL 429 (536)
T PLN02792 351 VKRKQRYAINGVSFVPSDTPLKLADHF-KIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHL 429 (536)
T ss_pred cCceeEEEECCcccCCCCCchhhhhhh-ccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeee
Confidence 235678999999999999999887766 66777766544443322 2223467888999999999999998888999999
Q ss_pred cCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeEEeecchhhhhccceEEEEEeCCCCC
Q 009960 400 DGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHNSDPN 479 (521)
Q Consensus 400 HG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~ 479 (521)
|||+||||++|.|.|++.....||+.||++||||.|+++||++|||++||||+|+||||+..|+..||.++|.|.++.+.
T Consensus 430 HGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~ 509 (536)
T PLN02792 430 DGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHS 509 (536)
T ss_pred CCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCc
Confidence 99999999999999988766789999999999999999999999999999999999999999999999999999988777
Q ss_pred CCCCCCCCCChhccccccc
Q 009960 480 PAKERPPPENLLLCGQCKF 498 (521)
Q Consensus 480 ~~~~~~~p~~~~~c~~~~~ 498 (521)
.+++.++|++++.||..++
T Consensus 510 ~~~~~~pP~~~~~Cg~~~~ 528 (536)
T PLN02792 510 LKDEYPLPKNALLCGRASN 528 (536)
T ss_pred cccccCCCcccCccccccC
Confidence 6678899999999985554
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.3e-102 Score=825.64 Aligned_cols=494 Identities=49% Similarity=0.879 Sum_probs=392.3
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQ 80 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q 80 (521)
|+|||+||+++||+|+|+|+|+|+++++|||||++|..++|+||+++.||||+||++|+|+|++++++||||||||.+.|
T Consensus 56 q~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q 135 (596)
T PLN00044 56 QFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALH 135 (596)
T ss_pred cCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhh
Confidence 69999999999999999999999999999999999999999999988899999999999999987789999999999999
Q ss_pred hcCCceecEEEeCCCCCCCCCCCCC-cceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCC-----
Q 009960 81 KAGGGFGPIRVNNRIVISVPFPKPE-AEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMT----- 154 (521)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~----- 154 (521)
+++||+|+|||++++..+.|+...+ +|++|+|+||++....++...+..+. ....++.+||||++...+++.
T Consensus 136 ~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~g~--~~~~~d~~lING~g~~~~n~~~~~~~ 213 (596)
T PLN00044 136 RAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALRRALDAGD--LLGAPDGVLINAFGPYQYNDSLVPPG 213 (596)
T ss_pred hhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHHHHHhcCC--CCCCCCceEEcccCccccCCccccCC
Confidence 9999999999999876666665434 79999999999988776655555443 345689999999987543332
Q ss_pred CCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCc-ceEEEe
Q 009960 155 REPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEA-DYYIVA 233 (521)
Q Consensus 155 ~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g-~~~i~~ 233 (521)
...+.++|++|++|||||||++....+.|+|+||+|+||++||.+++|..+++|.|++||||||+|+++++++ +|||++
T Consensus 214 ~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a 293 (596)
T PLN00044 214 ITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVA 293 (596)
T ss_pred CccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEE
Confidence 2446899999999999999999999999999999999999999999999999999999999999999998765 899998
Q ss_pred ccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCC-CCCcccccccccccccccccCCCCCCCCccccccccCcceEE
Q 009960 234 SPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPD-PFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSNVTLSQTF 312 (521)
Q Consensus 234 ~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~ 312 (521)
..............+.|||+|.++......++|..+. ..+..++.++...++.+..+....|.|.....+......+.+
T Consensus 294 ~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 373 (596)
T PLN00044 294 SARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVY 373 (596)
T ss_pred ecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeee
Confidence 6532111112356778999998864322222343332 334433333344444333333333434332222222222222
Q ss_pred EEecc-ccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEecCCCcEEEEEEEcCC
Q 009960 313 ILQGS-KAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTGNHKGWIELVFNNNL 391 (521)
Q Consensus 313 ~l~~~-~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~vi~N~~ 391 (521)
.+... .....+...|+|||.+|..|++|+|++.++ +++++|+.++...+| .......+.++.++.|++|||+|+|..
T Consensus 374 ~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~-~~~gv~~~~fp~~pp-~~~~~~~t~v~~~~~n~~VeiV~qn~~ 451 (596)
T PLN00044 374 LLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIF-NVPGVFKLDFPNHPM-NRLPKLDTSIINGTYKGFMEIIFQNNA 451 (596)
T ss_pred eeccccccccCCeEEEEECcccCCCCCCcchhhhhc-cCCCcccCCCCCCCC-ccccccCceEEEcCCCCEEEEEEeCCC
Confidence 22210 001124678999999999999999877776 777888766433333 222334788889999999999999987
Q ss_pred CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeEEeecchhhhhccceEEE
Q 009960 392 DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWNLRSQLLQNWFLGQELYI 471 (521)
Q Consensus 392 ~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~ 471 (521)
...||||||||+|+||++|.|.|+++.+..||+.||++||||.|+++||++|||++||||+|+|||||+.|++.||++.|
T Consensus 452 ~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~ 531 (596)
T PLN00044 452 TNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYI 531 (596)
T ss_pred CCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEE
Confidence 78999999999999999999999987777899999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCC-CCCCCCCCCChhccccccc
Q 009960 472 RVHNSDPN-PAKERPPPENLLLCGQCKF 498 (521)
Q Consensus 472 ~V~~~~~~-~~~~~~~p~~~~~c~~~~~ 498 (521)
.|.++.+. .+++.++|++++.||..++
T Consensus 532 ~v~~~~~~~~~~~~~pP~~~~~Cg~~~~ 559 (596)
T PLN00044 532 NVVNPEDNSNKTVLPIPDNAIFCGALSS 559 (596)
T ss_pred EEecCCCCccccccCCCcccCccccccc
Confidence 99987754 5568899999999985544
No 5
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.6e-102 Score=824.44 Aligned_cols=488 Identities=47% Similarity=0.828 Sum_probs=387.2
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQ 80 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q 80 (521)
|+|||+||+++||+|+|+|+|+|+++++|||||++|..++++||+|+.||||+||++|+|+|++.+++||||||||.+.|
T Consensus 54 q~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q 133 (552)
T PLN02354 54 QFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMH 133 (552)
T ss_pred CCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccce
Confidence 69999999999999999999999999999999999999999999998999999999999999976789999999999999
Q ss_pred hcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCCCCCceE
Q 009960 81 KAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMTREPESF 160 (521)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~~ 160 (521)
+++||+|+|||+++...+.+|+..++|++|+++||+++...++...+..+. ..+.++.+||||+....+ ....+.+
T Consensus 134 ~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~--~~~~~d~~liNG~~~~~~--~~~~~~~ 209 (552)
T PLN02354 134 RAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFLDSGR--TLGRPDGVLINGKSGKGD--GKDEPLF 209 (552)
T ss_pred ecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHHhcCC--CCCCCCeEEEeCCcCCCC--CCCceEE
Confidence 999999999999977666677677899999999999998776665555543 345689999999975322 1234789
Q ss_pred EEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEeccccccC
Q 009960 161 TVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPKLIST 240 (521)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~ 240 (521)
+|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++.+|+|||++...+...
T Consensus 210 ~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~ 289 (552)
T PLN02354 210 TMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKK 289 (552)
T ss_pred EECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999998543322
Q ss_pred CCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccccccCcceEEEEeccccc
Q 009960 241 NDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSNVTLSQTFILQGSKAE 320 (521)
Q Consensus 241 ~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~ 320 (521)
.....|||+|+++..+.+.+.|..+ .+..++.+.+.+++.++.+....|.|...........++++.+......
T Consensus 290 ----~~~~~ail~Y~g~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (552)
T PLN02354 290 ----VLTTTGIIRYEGGKGPASPELPEAP--VGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK 363 (552)
T ss_pred ----CccEEEEEEECCCCCCCCCCCCCCC--cccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEeccccc
Confidence 4667899999886542212222211 1111122223333333433322333322211122334555555443222
Q ss_pred cCCceEEEEccEEeecCCCchhhhhhhccC-CccccCCCCCCC-CC-CCCcccceeEEecCCCcEEEEEEEcCCCCccce
Q 009960 321 ISGWPRYVINNVSYLTLETPLKLADYFVNG-SGVYQLDWFPTN-SV-NDEATRGVSVVTGNHKGWIELVFNNNLDVIDSW 397 (521)
Q Consensus 321 ~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~-~~~~~~~~~~~~-p~-~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~HP~ 397 (521)
.++...|+|||.+|..|++|+|++.++ ++ .|.++.+..+.. |. ......++.++.++.|++|||+|+|.+...|||
T Consensus 364 ~~g~~~~~iNn~s~~~p~~P~L~~~~~-~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~ 442 (552)
T PLN02354 364 VDGKLRYALNGVSHVDPETPLKLAEYF-GVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSW 442 (552)
T ss_pred CCceEEEEECCccCCCCCCChHHhhhh-cccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCC
Confidence 245678999999999999998877554 22 344443311111 11 112344667889999999999999998889999
Q ss_pred eecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeEEeecchhhhhccceEEEEEeCCC
Q 009960 398 HLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHNSD 477 (521)
Q Consensus 398 HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 477 (521)
|||||+||||++|.|.|+++....+|+.||++|||+.||++||++|||++||||+|+|||||..|++.||++.+.|.++.
T Consensus 443 HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~ 522 (552)
T PLN02354 443 HLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPE 522 (552)
T ss_pred cCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCc
Confidence 99999999999999999876666899999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCChhcccccccC
Q 009960 478 PNPAKERPPPENLLLCGQCKFL 499 (521)
Q Consensus 478 ~~~~~~~~~p~~~~~c~~~~~~ 499 (521)
+..++..++|++.+.|+..++.
T Consensus 523 ~~~~~~~~~P~~~~~C~~~~~~ 544 (552)
T PLN02354 523 RSLRDEYNMPENALLCGKVKGL 544 (552)
T ss_pred cccCcCCCCCccccccccccCC
Confidence 6655667799999999866654
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=5.1e-102 Score=818.57 Aligned_cols=480 Identities=51% Similarity=0.894 Sum_probs=376.3
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQ 80 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q 80 (521)
|+|||+||+++||+|+|+|+|+|+++|+|||||++|..+++|||+|++||||+||++|+|+|++++++||||||||.+.|
T Consensus 53 ~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q 132 (545)
T PLN02168 53 MFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQ 132 (545)
T ss_pred cCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999986689999999999999
Q ss_pred hcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCCCCCceE
Q 009960 81 KAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMTREPESF 160 (521)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~~ 160 (521)
+++||+|+|||++++..+.+++..++|++|+|+||++.....+...+..+. ..++++.+||||+.... +.+
T Consensus 133 ~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~--~~~~~d~~liNG~~~~~-------~~~ 203 (545)
T PLN02168 133 KAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNGH--SLPNPDGILFNGRGPEE-------TFF 203 (545)
T ss_pred hhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcCC--CCCCCCEEEEeccCCCc-------ceE
Confidence 999999999999977666666677899999999999987655544343332 34578999999998532 789
Q ss_pred EEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCC-c---ceEEEeccc
Q 009960 161 TVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNE-A---DYYIVASPK 236 (521)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~-g---~~~i~~~~~ 236 (521)
+|++|++|||||||+|....+.|+|+||+|+||++||.+++|..+++|.|++||||||+|++++.+ | +|||++...
T Consensus 204 ~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~ 283 (545)
T PLN02168 204 AFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATAR 283 (545)
T ss_pred EeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999998654 4 799999874
Q ss_pred cccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccccccCcceEEEEec
Q 009960 237 LISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSNVTLSQTFILQG 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~ 316 (521)
..+. ...+.|||+|+++......+++..|...+...+.+...+++..+.+..+.+.|...+.+....+++++.+..
T Consensus 284 ~~~~----~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~ 359 (545)
T PLN02168 284 FTDA----YLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHN 359 (545)
T ss_pred ccCC----CcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecc
Confidence 4332 466789999987643222233332322222222222222222333322333333222222233445554433
Q ss_pred cccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEecCCCcEEEEEEEcCCCCccc
Q 009960 317 SKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTGNHKGWIELVFNNNLDVIDS 396 (521)
Q Consensus 317 ~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~HP 396 (521)
+....++...|+|||.+|..|++|+|++.++ .+++.+..+..+..|.+.....++.++.++.|++|||+|+|.....||
T Consensus 360 ~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP 438 (545)
T PLN02168 360 DVMLSSGKLRYTINGVSFVYPGTPLKLVDHF-QLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLES 438 (545)
T ss_pred cccccCceEEEEECCCccCCCCCchhhhhhc-ccccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCCCCCCCC
Confidence 2111245678999999999999998876554 333333333222222221122347788999999999999999888999
Q ss_pred eeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeEEeecchhhhhccceEEEEEeC-
Q 009960 397 WHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHN- 475 (521)
Q Consensus 397 ~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~- 475 (521)
||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||+|||||+|+|||||+.|++.||++.++|.+
T Consensus 439 ~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~ 518 (545)
T PLN02168 439 YHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGE 518 (545)
T ss_pred eeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcc
Confidence 9999999999999999998766667999999999999999999999999999999999999999999999999999853
Q ss_pred ----CCCC-CCCCCCCCCChhccc
Q 009960 476 ----SDPN-PAKERPPPENLLLCG 494 (521)
Q Consensus 476 ----~~~~-~~~~~~~p~~~~~c~ 494 (521)
|++. .+++.++|++++.||
T Consensus 519 ~~e~p~~~~~~~~~~~P~~~~~cg 542 (545)
T PLN02168 519 GEEDPSTIPVRDENPIPGNVIRCG 542 (545)
T ss_pred cccCccccccccccCCChhhcccc
Confidence 3333 234567999999996
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-95 Score=763.70 Aligned_cols=496 Identities=42% Similarity=0.729 Sum_probs=426.6
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQ 80 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q 80 (521)
+||||+|+|++||+|.|+|.|+++++++|||||++|..++|+||+.+.||||+||++|+|+|++++|.||||||+|.+.|
T Consensus 55 ~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~ 134 (563)
T KOG1263|consen 55 QFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQ 134 (563)
T ss_pred CCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccc
Confidence 69999999999999999999999999999999999999999999444499999999999999998899999999999999
Q ss_pred hcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccC-CHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCCCCCce
Q 009960 81 KAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYD-DYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMTREPES 159 (521)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~ 159 (521)
+++|++|+|||.++...+.|++++++|++|+++||+.+ ....+...+..+.. ....+|..+|||+..+.++| .+.
T Consensus 135 Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~-~p~~~D~~~iNg~~g~~~~~---~~~ 210 (563)
T KOG1263|consen 135 RATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTGA-LPNPSDGVLINGRSGFLYNC---TPT 210 (563)
T ss_pred cccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHhhccCCC-CCCCCCceEECCCCCcccCc---eeE
Confidence 99999999999999887888888999999999999996 77777777666542 22238999999999766655 589
Q ss_pred EEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEecccccc
Q 009960 160 FTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPKLIS 239 (521)
Q Consensus 160 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~ 239 (521)
++|++|++|||||+|+|....+.|+|+||+|+||++||.+++|..+++|.|.||||++|+|++++.+++|+|++.+.+.+
T Consensus 211 l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~ 290 (563)
T KOG1263|consen 211 LTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDA 290 (563)
T ss_pred EEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCceeEEEEEeCCCCCCCCCC---CCCCCCCCCcccccccccccccccccCCCCCCCCccccccccCcceEEEEec
Q 009960 240 TNDSSNLVGLGVLHYSNSKSQVTGP---LPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSNVTLSQTFILQG 316 (521)
Q Consensus 240 ~~~~~~~~~~ail~y~~~~~~~~~~---~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~ 316 (521)
..........++++|.++..+.+.. .+..+...+..++..+.+.++..+....+.|+|++.+........+.+.+..
T Consensus 291 ~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~ 370 (563)
T KOG1263|consen 291 SNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCN 370 (563)
T ss_pred CCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEecc
Confidence 4322267888999999854433222 2233434566778888888888888888888888766555555666666655
Q ss_pred cccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCC--C-CCcccceeEEecCCCcEEEEEEEcCC--
Q 009960 317 SKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSV--N-DEATRGVSVVTGNHKGWIELVFNNNL-- 391 (521)
Q Consensus 317 ~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~--~-~~~~~~~~~~~~~~g~~v~~vi~N~~-- 391 (521)
+....+++..++||+.+|..|++|+++++++..+++.+..++.+.++. . ...+.++.++.++.++.|||+|+|.+
T Consensus 371 ~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~ 450 (563)
T KOG1263|consen 371 SDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTG 450 (563)
T ss_pred CCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccc
Confidence 433446788999999999999999999998866665555544333322 1 12378899999999999999999988
Q ss_pred -CCccceeecCcceEEEeeccccCCC--CCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeEEeecchhhhhccce
Q 009960 392 -DVIDSWHLDGFGFHVVGFGIGEWAP--ESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWNLRSQLLQNWFLGQE 468 (521)
Q Consensus 392 -~~~HP~HlHG~~F~Vl~~g~g~~~~--~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GMm 468 (521)
...||||||||.||||++|.|.|++ +....||+.+|+.||||.|+||||++|||.|||||+|+||||+++|+..||+
T Consensus 451 ~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~ 530 (563)
T KOG1263|consen 451 TQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGME 530 (563)
T ss_pred cCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCe
Confidence 5669999999999999999999998 4446799999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCCCCCCCChhcccccccCc
Q 009960 469 LYIRVHNSDPNPAKERPPPENLLLCGQCKFLH 500 (521)
Q Consensus 469 ~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 500 (521)
++|.|.++++..+++.++|.+.+.||.-++..
T Consensus 531 ~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 531 TVFIVGNGEESLSSEYPPPKNLPKCGRASGIP 562 (563)
T ss_pred EEEEEeCCCccCCcCCCCCCCcccccccCCcC
Confidence 99999999888888899999999999887653
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=3e-95 Score=776.38 Aligned_cols=481 Identities=29% Similarity=0.491 Sum_probs=361.3
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCccc-CcccCCCCceEEEEEEcceeeeEEEecCchh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGT-NCPILPRKNWTYVFQVKDQIGSFFYFPSINF 79 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 79 (521)
|+|||+||+++||+|+|+|+|+|+++++|||||++|.+++++||+|++ ||||+||++|+|+|++++++||||||||...
T Consensus 30 ~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~ 109 (539)
T TIGR03389 30 KFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW 109 (539)
T ss_pred cccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh
Confidence 689999999999999999999999999999999999999999999998 9999999999999998668999999999986
Q ss_pred hhcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHH-HhccCCCCCCCCCCeEEEcCcCCCCCCCC-CCC
Q 009960 80 QKAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRS-MANTSLTAYNAIPDVILMNGKGPFGYQMT-REP 157 (521)
Q Consensus 80 q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~liNG~~~~~~~~~-~~~ 157 (521)
|. +||+|+|||+++...+.+++..|+|++|+|+||+++...++.. ....+. ...++|.+||||+......|. ...
T Consensus 110 ~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~--~~~~~d~~liNG~~~~~~~~~~~~~ 186 (539)
T TIGR03389 110 LR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGG--APNVSDAYTINGHPGPLYNCSSKDT 186 (539)
T ss_pred hh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCC--CCCccceEEECCCcCCCCCCCCCCc
Confidence 65 5899999999876655666677999999999999987655432 233332 344779999999975432222 244
Q ss_pred ceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEecccc
Q 009960 158 ESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPKL 237 (521)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~~ 237 (521)
+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|++||||||+|++++.+|+||||+....
T Consensus 187 ~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~ 266 (539)
T TIGR03389 187 FKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYM 266 (539)
T ss_pred eEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999988999999998654
Q ss_pred ccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccccccCcceEEEEecc
Q 009960 238 ISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSNVTLSQTFILQGS 317 (521)
Q Consensus 238 ~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~~ 317 (521)
.+..........|||+|++......+..+..+...+...+......+.....+..+...| ..+++++.+...
T Consensus 267 ~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p--------~~~~~~~~~~~~ 338 (539)
T TIGR03389 267 DAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANVP--------VTIDRRLFFTIG 338 (539)
T ss_pred cCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCCC--------CCCCeEEEEEee
Confidence 332212245678999998864321111121111111100000000111000010000011 113333322221
Q ss_pred c-----------cccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCC-----------CCCCcccceeEE
Q 009960 318 K-----------AEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNS-----------VNDEATRGVSVV 375 (521)
Q Consensus 318 ~-----------~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p-----------~~~~~~~~~~~~ 375 (521)
. ...+....|+|||++|..|.+|+|.+.+. ++++.+..+.....| .+-..+.+++++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~ 417 (539)
T TIGR03389 339 LGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYF-GISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVV 417 (539)
T ss_pred cccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhc-ccCCccccCCccCCCccccCCCCCcccccccccCceEE
Confidence 0 00122467999999999899998755433 333332221100001 000122366788
Q ss_pred ecCCCcEEEEEEEcCC---CCccceeecCcceEEEeeccccCCCCC-CCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 376 TGNHKGWIELVFNNNL---DVIDSWHLDGFGFHVVGFGIGEWAPES-RSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 376 ~~~~g~~v~~vi~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...+|+.||++|||+.|+++||++|||++||||
T Consensus 418 ~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG 497 (539)
T TIGR03389 418 RLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPG 497 (539)
T ss_pred EecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCe
Confidence 9999999999999975 448999999999999999999887542 236899999999999999999999999999999
Q ss_pred eeEEeecchhhhhccceEEEEEeCCCCCCCCCCCCCCChhcc
Q 009960 452 MWNLRSQLLQNWFLGQELYIRVHNSDPNPAKERPPPENLLLC 493 (521)
Q Consensus 452 ~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 493 (521)
+|+|||||++|+..||+++|.+...++...++.++|++++.|
T Consensus 498 ~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 498 VWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred EEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 999999999999999999998876654445678899999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=7.3e-93 Score=757.62 Aligned_cols=476 Identities=29% Similarity=0.534 Sum_probs=354.8
Q ss_pred CCCCCeEEEecCCEEEEEEEECCC-CCeeEEecCcCCCCCCCCCCCccc-CcccCCCCceEEEEEEcceeeeEEEecCch
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLD-EPLLFTWNGIQQRLNSWQDGVSGT-NCPILPRKNWTYVFQVKDQIGSFFYFPSIN 78 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~ 78 (521)
|+|||+||+++||+|+|+|+|+|+ ++++|||||+++.+++++||+|++ ||||+||++|+|+|++ .++||||||||.+
T Consensus 50 ~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~ 128 (574)
T PLN02191 50 QFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYG 128 (574)
T ss_pred cCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcH
Confidence 689999999999999999999997 789999999999999999999998 9999999999999997 6899999999999
Q ss_pred hhhcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCC----
Q 009960 79 FQKAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMT---- 154 (521)
Q Consensus 79 ~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~---- 154 (521)
.|+++||+|+|||+++...+.++ .+|+|++|+|+||++....+....+.........+++.+||||++...|...
T Consensus 129 ~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~ 207 (574)
T PLN02191 129 MQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFS 207 (574)
T ss_pred HHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCccccccc
Confidence 99999999999999754333233 4599999999999998644322222211111235789999999987765311
Q ss_pred ---------------CCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEE
Q 009960 155 ---------------REPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVL 219 (521)
Q Consensus 155 ---------------~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~ 219 (521)
+....++|++|++|||||||+|+...+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+
T Consensus 208 ~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVl 287 (574)
T PLN02191 208 NGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVL 287 (574)
T ss_pred CCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEE
Confidence 12236999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC-cceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCC--CCCCCCCCCcccccccccccccccccCCCCCC
Q 009960 220 VTADQNE-ADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGP--LPIGPDPFDLDFSMNQAKSVRWNLTAGAARPN 296 (521)
Q Consensus 220 v~~~~~~-g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~--~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~ 296 (521)
|++++.+ ++||||+.....+. ......|||+|.+......+. .+..|...+.... .+....+......+.
T Consensus 288 V~a~~~~~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~ 360 (574)
T PLN02191 288 LTTDQDPSQNYYISVGVRGRKP---NTTQALTILNYVTAPASKLPSSPPPVTPRWDDFERS----KNFSKKIFSAMGSPS 360 (574)
T ss_pred EECCCCCCCCEEEEEEccccCC---CCCCceEEEEECCCCCCCCCCCCCCCCCcccccchh----hcccccccccccCCC
Confidence 9999876 58999997543221 123346999998764321111 1111111111100 111111110000011
Q ss_pred CCccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCC---------CCC-CC
Q 009960 297 PQGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPT---------NSV-ND 366 (521)
Q Consensus 297 p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~---------~p~-~~ 366 (521)
+.. ...++++.+.... ...+...|+|||.+|..|..|+|++.+. +.+++++.+.... .+. ..
T Consensus 361 ~p~------~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~P~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (574)
T PLN02191 361 PPK------KYRKRLILLNTQN-LIDGYTKWAINNVSLVTPATPYLGSVKY-NLKLGFNRKSPPRSYRMDYDIMNPPPFP 432 (574)
T ss_pred CCC------cccceEEEecccc-eeCCeEEEEECcccCcCCCcchHHHHhh-ccCcccccCCCcccccccccccCCCccc
Confidence 110 1123444443211 1234568999999999899998877554 3444443321110 000 01
Q ss_pred CcccceeEEecCCCcEEEEEEEcCC------CCccceeecCcceEEEeeccccCCCCC-CCCCCCCCCCcceEEEeCCCC
Q 009960 367 EATRGVSVVTGNHKGWIELVFNNNL------DVIDSWHLDGFGFHVVGFGIGEWAPES-RSTYNLFDPVVRSTVQVYPGG 439 (521)
Q Consensus 367 ~~~~~~~~~~~~~g~~v~~vi~N~~------~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~n~~~p~~rDTv~vp~~g 439 (521)
..+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+++. ...+|+.||++|||+.|+++|
T Consensus 433 ~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~G 512 (574)
T PLN02191 433 NTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYG 512 (574)
T ss_pred cccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCC
Confidence 1234667889999999999999985 678999999999999999999998632 246899999999999999999
Q ss_pred EEEEEEEecCCeeeEEeecchhhhhccceEEEEEeCCCCCCCCCCCCCCChhccccccc
Q 009960 440 WTAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHNSDPNPAKERPPPENLLLCGQCKF 498 (521)
Q Consensus 440 ~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~ 498 (521)
|++|||++||||+|+|||||++|+..||+++| ++.+++ ...+|++.+.|+.++.
T Consensus 513 w~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~-~e~~~~----~~~~p~~~~~C~~~~~ 566 (574)
T PLN02191 513 WTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVF-AEGLNR----IGKIPDEALGCGLTKQ 566 (574)
T ss_pred EEEEEEECCCCEEEEEecCchhhhhcCCEEEE-ecChhh----ccCCCcchhhhhcccc
Confidence 99999999999999999999999999999999 444443 3347888999985543
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=3.1e-92 Score=752.65 Aligned_cols=472 Identities=30% Similarity=0.577 Sum_probs=355.4
Q ss_pred CCCCCeEEEecCCEEEEEEEECCC-CCeeEEecCcCCCCCCCCCCCccc-CcccCCCCceEEEEEEcceeeeEEEecCch
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLD-EPLLFTWNGIQQRLNSWQDGVSGT-NCPILPRKNWTYVFQVKDQIGSFFYFPSIN 78 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~ 78 (521)
++|||+||+++||+|+|+|+|+|. ++++|||||+++.++++|||++++ ||+|+||++|+|+|++ +++||||||||.+
T Consensus 28 ~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~-~~~Gt~wyH~H~~ 106 (541)
T TIGR03388 28 QFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVV-DRPGTYFYHGHYG 106 (541)
T ss_pred cCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEc-CCCEEEEEEecch
Confidence 689999999999999999999994 899999999999999999999998 9999999999999997 6899999999999
Q ss_pred hhhcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCC----
Q 009960 79 FQKAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMT---- 154 (521)
Q Consensus 79 ~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~---- 154 (521)
.|+++||+|+|||+++...+.++ .+|+|++|+|+||+++...+....+.........+++.+||||+++..|...
T Consensus 107 ~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~ 185 (541)
T TIGR03388 107 MQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFS 185 (541)
T ss_pred HHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccC
Confidence 99999999999999876544455 4589999999999998765433322221111224679999999987655321
Q ss_pred --------------CCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEE
Q 009960 155 --------------REPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLV 220 (521)
Q Consensus 155 --------------~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v 220 (521)
..+..++|++|++|||||||+|+.+.+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv 265 (541)
T TIGR03388 186 STNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLL 265 (541)
T ss_pred ccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEE
Confidence 123458999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC-cceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCC--CCCCCCCCCCcccccccccccccccccCCCCCCC
Q 009960 221 TADQNE-ADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTG--PLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNP 297 (521)
Q Consensus 221 ~~~~~~-g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~--~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p 297 (521)
++++.+ |+||||+....... ....+.|||+|.+......+ +.+..|...+.... ......+......+.|
T Consensus 266 ~~~~~~~~~y~ira~~~~~~~---~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~ 338 (541)
T TIGR03388 266 TTDQDPSRNYWISVGVRGRKP---NTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRS----KAFSLAIKAAMGSPKP 338 (541)
T ss_pred eCCCCCCCcEEEEEecccCCC---CCccEEEEEEECCCCCCCCCCCCCCCCCCccccchh----hccchhhhccccCCCC
Confidence 998766 48999997643211 23457899999875432111 11111211111100 0000001000001111
Q ss_pred CccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCC----------CCCCCCC
Q 009960 298 QGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFP----------TNSVNDE 367 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~----------~~p~~~~ 367 (521)
. ...++++.+.......++...|++||.+|..|..|+|.+..+ +..++++.+..+ ..+....
T Consensus 339 ~-------~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (541)
T TIGR03388 339 P-------ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKY-NLLNAFDQKPPPENYPRDYDIFKPPPNPN 410 (541)
T ss_pred C-------CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhh-cCCccccCCCCcccccccccccCCCcccc
Confidence 1 123455443332211234567999999999888998876544 333333322110 0011112
Q ss_pred cccceeEEecCCCcEEEEEEEcCC------CCccceeecCcceEEEeeccccCCCCC-CCCCCCCCCCcceEEEeCCCCE
Q 009960 368 ATRGVSVVTGNHKGWIELVFNNNL------DVIDSWHLDGFGFHVVGFGIGEWAPES-RSTYNLFDPVVRSTVQVYPGGW 440 (521)
Q Consensus 368 ~~~~~~~~~~~~g~~v~~vi~N~~------~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~n~~~p~~rDTv~vp~~g~ 440 (521)
.+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+.+. ...+|+.||++|||+.|+++||
T Consensus 411 ~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gw 490 (541)
T TIGR03388 411 TTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGW 490 (541)
T ss_pred cccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCce
Confidence 345677889999999999999974 467999999999999999999887542 3468999999999999999999
Q ss_pred EEEEEEecCCeeeEEeecchhhhhccceEEEEEeCCCCCCCCCCCCCCChhccc
Q 009960 441 TAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHNSDPNPAKERPPPENLLLCG 494 (521)
Q Consensus 441 v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~ 494 (521)
++|||++||||.|+|||||++|+..||+++|... ++ +...+|++++.|+
T Consensus 491 vvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~----~~~~~P~~~~~C~ 539 (541)
T TIGR03388 491 TALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VE----KVGKLPKEALGCG 539 (541)
T ss_pred EEEEEECCCCeEeeeeccchhhhhcccEEEEecc-cc----ccCCCCccccCCC
Confidence 9999999999999999999999999999999553 33 2445899999997
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.2e-91 Score=750.17 Aligned_cols=476 Identities=30% Similarity=0.558 Sum_probs=359.7
Q ss_pred CCCCCeEEEecCCEEEEEEEECC-CCCeeEEecCcCCCCCCCCCCCccc-CcccCCCCceEEEEEEcceeeeEEEecCch
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNL-DEPLLFTWNGIQQRLNSWQDGVSGT-NCPILPRKNWTYVFQVKDQIGSFFYFPSIN 78 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~ 78 (521)
++|||+||+++||+|+|+|+|++ .++++|||||+++.+++++||++++ ||+|+||++|+|+|++ +++||||||||..
T Consensus 51 ~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~ 129 (566)
T PLN02604 51 RSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYG 129 (566)
T ss_pred ccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcH
Confidence 58999999999999999999998 6899999999999888999999998 9999999999999997 6899999999999
Q ss_pred hhhcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCC----
Q 009960 79 FQKAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMT---- 154 (521)
Q Consensus 79 ~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~---- 154 (521)
.|+.+||+|+|||+++...+.++ .+++|++|+|+||+++...+....+.........+++..+|||++...|...
T Consensus 130 ~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~ 208 (566)
T PLN02604 130 MQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPY 208 (566)
T ss_pred HHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCcc
Confidence 99999999999999876545555 4588999999999998875543332221111234679999999988765311
Q ss_pred ------------CCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEe
Q 009960 155 ------------REPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTA 222 (521)
Q Consensus 155 ------------~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~ 222 (521)
...+.++|++|++|||||||+|+.+.+.|+|+||+|+|||+||.+++|.+++.|.|++||||||+|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~ 288 (566)
T PLN02604 209 LKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKA 288 (566)
T ss_pred ccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEEC
Confidence 13457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc-ceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCC-C-CCCCCCCCcccccccccccccccccCCCCCCCCc
Q 009960 223 DQNEA-DYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGP-L-PIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQG 299 (521)
Q Consensus 223 ~~~~g-~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~-~-p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~ 299 (521)
++.+| +||||+.....+ .....+.|||+|.+.......+ . +..+...+....+.....++. +... ..+
T Consensus 289 ~~~~~~~y~ira~~~~~~---~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~---- 359 (566)
T PLN02604 289 DQDPSRNYWVTTSVVSRN---NTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKA-RHGY-IHP---- 359 (566)
T ss_pred CCCCCCCEEEEEecccCC---CCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccc-cccC-cCC----
Confidence 98775 899998754322 1235678999998643211110 0 111111111101000000000 0000 000
Q ss_pred cccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCC-----------CCCCc
Q 009960 300 TFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNS-----------VNDEA 368 (521)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p-----------~~~~~ 368 (521)
.....++++.+.......++...|+||+.+|..+..|+|++.+. ..+++++.+..+..+ .....
T Consensus 360 ----~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (566)
T PLN02604 360 ----PPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKE-NLTGAFDQTPPPEGYDFANYDIYAKPNNSNA 434 (566)
T ss_pred ----CCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhh-cCCCcccCCCCCcccccccccccCCcccccc
Confidence 01124555554332212234578999999999888998766544 445555432111100 00122
Q ss_pred ccceeEEecCCCcEEEEEEEcCC------CCccceeecCcceEEEeeccccCCCCC-CCCCCCCCCCcceEEEeCCCCEE
Q 009960 369 TRGVSVVTGNHKGWIELVFNNNL------DVIDSWHLDGFGFHVVGFGIGEWAPES-RSTYNLFDPVVRSTVQVYPGGWT 441 (521)
Q Consensus 369 ~~~~~~~~~~~g~~v~~vi~N~~------~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~n~~~p~~rDTv~vp~~g~v 441 (521)
+.+..++.++.|++||++|+|.. ...||||||||+||||++|.|.|++.. ...+|+.||++|||+.|+++||+
T Consensus 435 ~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwv 514 (566)
T PLN02604 435 TSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWT 514 (566)
T ss_pred ccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceE
Confidence 34567889999999999999985 467999999999999999999997643 34789999999999999999999
Q ss_pred EEEEEecCCeeeEEeecchhhhhccceEEEEEeCCCCCCCCCCCCCCChhcccccc
Q 009960 442 AVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHNSDPNPAKERPPPENLLLCGQCK 497 (521)
Q Consensus 442 ~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~ 497 (521)
+|||++||||.|+|||||++|+..||+++|.+. ++ ....+|.+++.|+..+
T Consensus 515 vIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~----~~~~~p~~~~~C~~~~ 565 (566)
T PLN02604 515 ALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IE----RVGKLPSSIMGCGESK 565 (566)
T ss_pred EEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hh----hccCCCCCcCccccCC
Confidence 999999999999999999999999999999654 33 2557888999997543
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2e-90 Score=736.57 Aligned_cols=460 Identities=23% Similarity=0.392 Sum_probs=344.3
Q ss_pred CCCCCeEEEecCCEEEEEEEECCC-CCeeEEecCcCCCCCCCCCCCccc-CcccCCCCceEEEEEEc-ceeeeEEEecCc
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLD-EPLLFTWNGIQQRLNSWQDGVSGT-NCPILPRKNWTYVFQVK-DQIGSFFYFPSI 77 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~-~~~Gt~wYH~H~ 77 (521)
|+|||+||+++||+|+|+|+|+|+ ++++|||||++|..++++||+|++ ||||+||++|+|+|+++ +++||||||||.
T Consensus 35 ~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~ 114 (538)
T TIGR03390 35 TSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHV 114 (538)
T ss_pred cCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCC
Confidence 689999999999999999999996 899999999999999999999998 99999999999999975 589999999999
Q ss_pred hhhhcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCC-----
Q 009960 78 NFQKAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQ----- 152 (521)
Q Consensus 78 ~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~----- 152 (521)
+.|+. ||+|+|||+++... ++ .+|+|++|+|+||+++...++...+..+......+++.+||||+....+.
T Consensus 115 ~~Q~~-~l~G~lIV~~~~~~--~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~ 190 (538)
T TIGR03390 115 GFQAV-TAFGPLIVEDCEPP--PY-KYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQIN 190 (538)
T ss_pred chhhh-cceeEEEEccCCcc--CC-CccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCcccccccccccc
Confidence 99986 59999999986533 33 35899999999999998776544333222122346789999999754331
Q ss_pred --CCCCCceEEEecCcEEEEEEEecCccceeeEEEcCce-eEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCC----
Q 009960 153 --MTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHK-MVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQN---- 225 (521)
Q Consensus 153 --~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~-~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~---- 225 (521)
..+..+.++|++|++|||||||+|+...+.|+|+||+ |+|||+||.+++|..+++|.|++||||||+|++++.
T Consensus 191 ~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~ 270 (538)
T TIGR03390 191 PSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELC 270 (538)
T ss_pred CCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccc
Confidence 1234578999999999999999999999999999999 999999999999999999999999999999999865
Q ss_pred ---CcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCcccc
Q 009960 226 ---EADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFN 302 (521)
Q Consensus 226 ---~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~ 302 (521)
+|+||||+.....++ ...+.|||+|++...+..+..|..+...... ....+.+ ..+.+......+. ++
T Consensus 271 ~~~~~~Y~ir~~~~~~~~----~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~-~~~~~~~--~~l~pl~~~~~~~--~~ 341 (538)
T TIGR03390 271 GGDKRQYFIQFETRDRPK----VYRGYAVLRYRSDKASKLPSVPETPPLPLPN-STYDWLE--YELEPLSEENNQD--FP 341 (538)
T ss_pred cCCCCcEEEEEeecCCCC----cceEEEEEEeCCCCCCCCCCCCCCCCCCccC-cchhhhh--eeeEecCccccCC--CC
Confidence 489999997643322 3567899999865432211112211100000 0000111 1122111100000 00
Q ss_pred ccccCcceEEEEeccccc--cCCceEEEEccEEeec--CCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEecC
Q 009960 303 VSNVTLSQTFILQGSKAE--ISGWPRYVINNVSYLT--LETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTGN 378 (521)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~--~~g~~~~~iNg~~f~~--~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 378 (521)
....+++++.+...... .++...|+|||.+|.. ++.|+|.+.+..........+ + .........++.++.++
T Consensus 342 -~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~ 417 (538)
T TIGR03390 342 -TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYT--A-ALANYGFDPETRAFPAK 417 (538)
T ss_pred -CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcc--c-ccccCCcCcCceEEEcC
Confidence 01235667666554321 2456789999999985 788987654431110000000 0 00000123356678899
Q ss_pred CCcEEEEEEEcCC--------CCccceeecCcceEEEeeccccCCCCC-CCCCCCCCCCcceEEEeC----------CCC
Q 009960 379 HKGWIELVFNNNL--------DVIDSWHLDGFGFHVVGFGIGEWAPES-RSTYNLFDPVVRSTVQVY----------PGG 439 (521)
Q Consensus 379 ~g~~v~~vi~N~~--------~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~n~~~p~~rDTv~vp----------~~g 439 (521)
.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+|+.||++|||+.|+ +++
T Consensus 418 ~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~ 497 (538)
T TIGR03390 418 VGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAG 497 (538)
T ss_pred CCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCc
Confidence 9999999999974 578999999999999999999998643 235788999999999996 789
Q ss_pred EEEEEEEecCCeeeEEeecchhhhhccceEEEEEeCCC
Q 009960 440 WTAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHNSD 477 (521)
Q Consensus 440 ~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 477 (521)
|++|||++||||+|+|||||++|+..||+++|.|.+.+
T Consensus 498 ~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 498 WRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred eEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 99999999999999999999999999999999987654
No 13
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.6e-75 Score=617.00 Aligned_cols=414 Identities=17% Similarity=0.202 Sum_probs=282.5
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCc---
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSI--- 77 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~--- 77 (521)
++||||||+++||+|+|+++|+|+++|+|||||+++. +.+||+| ||+|.||++|+|+|++++++||||||||.
T Consensus 73 ~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~--~~~DG~p--q~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~ 148 (523)
T PRK10965 73 NLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVP--GEVDGGP--QGIIAPGGKRTVTFTVDQPAATCWFHPHQHGK 148 (523)
T ss_pred CCCCceEEEECCCEEEEEEEECCCCCccEEcccccCC--CccCCCC--CCCCCCCCEEEEEeccCCCCceEEEecCCCCC
Confidence 5899999999999999999999999999999999885 4599988 89999999999999986668999999996
Q ss_pred -hhhhcCCceecEEEeCCCCCCCCCC--CCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCC
Q 009960 78 -NFQKAGGGFGPIRVNNRIVISVPFP--KPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMT 154 (521)
Q Consensus 78 -~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~ 154 (521)
+.|+++||+|+|||+++...+.+++ ...+|++|+++||+++.++.+..............++.+||||+.+
T Consensus 149 t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~------ 222 (523)
T PRK10965 149 TGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIY------ 222 (523)
T ss_pred cHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCccc------
Confidence 6999999999999999765433332 2456999999999997765543222111111123678999999988
Q ss_pred CCCceEEEecCcEEEEEEEecCccceeeEEE-cCceeEEEEecCCcc-cceeeeeEEecCCcEEEEEEEeCCCCcceEEE
Q 009960 155 REPESFTVTKGMTYRFRISNVGSVFSFNFRI-QNHKMVLVETEGSYT-NQITLRSLDVHVGQSYSVLVTADQNEADYYIV 232 (521)
Q Consensus 155 ~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~ 232 (521)
|.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||+||+++ +|..++.|.|+|||||||+|++++ .++|.++
T Consensus 223 ---p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~-~~~~~l~ 297 (523)
T PRK10965 223 ---PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD-GKAFDLV 297 (523)
T ss_pred ---ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC-CceEEEE
Confidence 777775 579999999999999999998 899999999999987 899999999999999999999984 6789988
Q ss_pred eccccccCC-CCCCceeEEEEEeCCCCCCCCCCCCCCCCC-CCccc-ccccccccccccccCCC--------CCCCCccc
Q 009960 233 ASPKLISTN-DSSNLVGLGVLHYSNSKSQVTGPLPIGPDP-FDLDF-SMNQAKSVRWNLTAGAA--------RPNPQGTF 301 (521)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~ail~y~~~~~~~~~~~p~~p~~-~~~~~-~~~~~~~~~~~l~~~~~--------~p~p~~~~ 301 (521)
+........ .........++++.........++|..... ..... .....+.+.+.+..... .......
T Consensus 298 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~- 376 (523)
T PRK10965 298 TLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQA- 376 (523)
T ss_pred EecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhhccccccccc-
Confidence 764322110 000111235555543321111112211000 00000 00000000000000000 0000000
Q ss_pred cccccCcceEE-EEec-----cccc--cCCc-----eEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCc
Q 009960 302 NVSNVTLSQTF-ILQG-----SKAE--ISGW-----PRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEA 368 (521)
Q Consensus 302 ~~~~~~~~~~~-~l~~-----~~~~--~~g~-----~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~ 368 (521)
.+....+... .+.. .... ..+. ..|+|||++|... .|
T Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~-~~---------------------------- 426 (523)
T PRK10965 377 -MAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMN-KP---------------------------- 426 (523)
T ss_pred -cccccccccccccccccccccccccccccccccccccccCCCeECCCC-Cc----------------------------
Confidence 0000000000 0000 0000 0000 1258999988522 11
Q ss_pred ccceeEEecCCCcEEEEEEEcCCC-CccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEe
Q 009960 369 TRGVSVVTGNHKGWIELVFNNNLD-VIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFL 447 (521)
Q Consensus 369 ~~~~~~~~~~~g~~v~~vi~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~a 447 (521)
.+.++.|++++|.|.|.+. +.|||||||++||||++++.+.. ...+.|||||.|++ +.+.|++++
T Consensus 427 -----~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~--------~~~~~wkDTv~v~~-~~~~i~~~f 492 (523)
T PRK10965 427 -----MFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPA--------AHRAGWKDTVRVEG-GRSEVLVKF 492 (523)
T ss_pred -----ceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCC--------ccccccccEEEECC-cEEEEEEEe
Confidence 2467899999999999984 78999999999999999764321 12357999999988 677777666
Q ss_pred c----CCeeeEEeecchhhhhccceEEEEEe
Q 009960 448 D----NPGMWNLRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 448 d----npG~w~~HCHil~H~d~GMm~~~~V~ 474 (521)
+ ++|.||||||||+|||.|||..|.|.
T Consensus 493 ~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 493 DHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred cCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 5 56799999999999999999999883
No 14
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.3e-74 Score=614.37 Aligned_cols=405 Identities=21% Similarity=0.284 Sum_probs=297.6
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCccc-CcccCCCCceEEEEEEcceeeeEEEecCchh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGT-NCPILPRKNWTYVFQVKDQIGSFFYFPSINF 79 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 79 (521)
++|||+||+++||+|+|+|+|+|+++++|||||+++ .+.+||+|++ ||+|+||++|+|+|++ .++||||||||...
T Consensus 72 ~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~--~~~~DGvP~vt~~~I~PG~s~~Y~f~~-~~~GTyWYHsH~~~ 148 (587)
T TIGR01480 72 SIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILL--PFQMDGVPGVSFAGIAPGETFTYRFPV-RQSGTYWYHSHSGF 148 (587)
T ss_pred ccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcC--CccccCCCcccccccCCCCeEEEEEEC-CCCeeEEEecCchh
Confidence 589999999999999999999999999999999976 4679999998 9999999999999997 67999999999999
Q ss_pred hhcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhc----------------------cCC------
Q 009960 80 QKAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMAN----------------------TSL------ 131 (521)
Q Consensus 80 q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~----------------------~~~------ 131 (521)
|+++||+|+|||+++...+.. +|+|++|+|+||++.....+...+. .|.
T Consensus 149 q~~~GL~G~lIV~~~~~~p~~---~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 225 (587)
T TIGR01480 149 QEQAGLYGPLIIDPAEPDPVR---ADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLAD 225 (587)
T ss_pred HhhccceEEEEECCCccccCC---CCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccc
Confidence 999999999999986544333 4899999999999876544322110 010
Q ss_pred ---CCC----------C-CCCCeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecC
Q 009960 132 ---TAY----------N-AIPDVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEG 197 (521)
Q Consensus 132 ---~~~----------~-~~~~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG 197 (521)
.+. . .....+||||+... ..+++.+++|++|||||||+|+.+.+.|+|+||+|+||++||
T Consensus 226 ~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~------~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG 299 (587)
T TIGR01480 226 RKMWGQMRMTPTDLADVNGSTYTYLMNGTTPA------GNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDG 299 (587)
T ss_pred cccccccccCCcccccccCccceEEEcCccCC------CCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCC
Confidence 000 0 01124889999753 235789999999999999999999999999999999999999
Q ss_pred CcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCC--CCCcc
Q 009960 198 SYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPD--PFDLD 275 (521)
Q Consensus 198 ~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~--~~~~~ 275 (521)
.+++|+.++.+.|++||||||+|+++ ..|.|+|++..... ...+.++|++.+......++++..|. ..+..
T Consensus 300 ~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~------~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~ 372 (587)
T TIGR01480 300 QYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR------TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMG 372 (587)
T ss_pred cCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC------CceEEEEEecCCCCCCCCCCCCCccccChhhcc
Confidence 99999999999999999999999987 46899999976422 34677888886542111111111110 00110
Q ss_pred c-cc---------cc--ccccc---------------cccccC--------------CCCCCCCcc--------------
Q 009960 276 F-SM---------NQ--AKSVR---------------WNLTAG--------------AARPNPQGT-------------- 300 (521)
Q Consensus 276 ~-~~---------~~--~~~~~---------------~~l~~~--------------~~~p~p~~~-------------- 300 (521)
. .. .. ..... .+.... ...+.|...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (587)
T TIGR01480 373 MGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRR 452 (587)
T ss_pred cccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcc
Confidence 0 00 00 00000 000000 000000000
Q ss_pred -cc----------ccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcc
Q 009960 301 -FN----------VSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEAT 369 (521)
Q Consensus 301 -~~----------~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~ 369 (521)
.. .....++|++.+.... ......|+|||+.|...
T Consensus 453 ~~~y~~l~~~~~~~~~~~p~r~~~~~L~g--~m~~~~wtiNG~~~~~~-------------------------------- 498 (587)
T TIGR01480 453 VLTYADLHSLFPPPDGRAPGREIELHLTG--NMERFAWSFDGEAFGLK-------------------------------- 498 (587)
T ss_pred eeehhhccccccccCcCCCCceEEEEEcC--CCceeEEEECCccCCCC--------------------------------
Confidence 00 0011345555554421 12345799999876410
Q ss_pred cceeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC
Q 009960 370 RGVSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN 449 (521)
Q Consensus 370 ~~~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 449 (521)
..+.++.|++|+|+|.|...+.|||||||+.|+++..++ .+ +++|||+.|+|++++.++|.+||
T Consensus 499 ---~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G-~~------------~~~~dTv~V~Pg~t~~~~f~ad~ 562 (587)
T TIGR01480 499 ---TPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQG-EF------------QVRKHTVDVPPGGKRSFRVTADA 562 (587)
T ss_pred ---CceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCC-cc------------cccCCceeeCCCCEEEEEEECCC
Confidence 124688999999999999999999999999999987543 22 34789999999999999999999
Q ss_pred CeeeEEeecchhhhhccceEEEEEe
Q 009960 450 PGMWNLRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 450 pG~w~~HCHil~H~d~GMm~~~~V~ 474 (521)
||.|+||||++.|++.|||..++|.
T Consensus 563 pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 563 LGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 9999999999999999999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=4.4e-73 Score=593.70 Aligned_cols=378 Identities=18% Similarity=0.216 Sum_probs=274.7
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCch--
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSIN-- 78 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-- 78 (521)
++||||||+++||+|+|+|+|+|+++|++||||+++... .+||++ ++|.||++|+|+|++.+++||||||||.+
T Consensus 73 ~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~ 148 (471)
T PRK10883 73 RYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSPNADWAPVLPIRQNAATCWYHANTPNR 148 (471)
T ss_pred cccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCCCCeEEEEEecCCCceeeEEccCCCCc
Confidence 589999999999999999999999999999999998754 466654 88999999999999866799999999954
Q ss_pred --hhhcCCceecEEEeCCCCCCCCCC--CCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCC
Q 009960 79 --FQKAGGGFGPIRVNNRIVISVPFP--KPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMT 154 (521)
Q Consensus 79 --~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~ 154 (521)
.|+++||+|+|||+++.+.+.+++ ....|++|+|+||+++..+..... .... ....++.+||||+..
T Consensus 149 t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~-~~~~--~g~~gd~~lvNG~~~------ 219 (471)
T PRK10883 149 MAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN-EPGS--GGFVGDTLLVNGVQS------ 219 (471)
T ss_pred hhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-cccc--CCccCCeeEECCccC------
Confidence 599999999999998765433332 234599999999998765432111 1111 123678999999988
Q ss_pred CCCceEEEecCcEEEEEEEecCccceeeEEE-cCceeEEEEecCCcc-cceeeeeEEecCCcEEEEEEEeCCCCcceEEE
Q 009960 155 REPESFTVTKGMTYRFRISNVGSVFSFNFRI-QNHKMVLVETEGSYT-NQITLRSLDVHVGQSYSVLVTADQNEADYYIV 232 (521)
Q Consensus 155 ~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~ 232 (521)
|.++|++| +|||||||+|+.+.+.|+| ++|+|+|||+||+++ +|..++++.|+|||||||+|++++ .+.+.++
T Consensus 220 ---p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~-~~~~~l~ 294 (471)
T PRK10883 220 ---PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN-GDEVSIT 294 (471)
T ss_pred ---CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC-CceEEEE
Confidence 79999875 8999999999999999999 899999999998776 899999999999999999999974 4567666
Q ss_pred eccccccCC-C-C-CCc----eeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccccc
Q 009960 233 ASPKLISTN-D-S-SNL----VGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSN 305 (521)
Q Consensus 233 ~~~~~~~~~-~-~-~~~----~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~ 305 (521)
+........ . . ... ....+++....... ...+. + ++..+.... +.+ ..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~--------------~p~~l~~~~--~~~------~~ 349 (471)
T PRK10883 295 AGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLL--PLVTD-N--------------LPMRLLPDE--IME------GS 349 (471)
T ss_pred CCCccccccccccccCCccccccceeEEEEccccc--cCCCC-c--------------CChhhcCCC--CCC------CC
Confidence 632110000 0 0 000 01122332221100 00000 0 000011000 000 01
Q ss_pred cCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEecCCCcEEEE
Q 009960 306 VTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTGNHKGWIEL 385 (521)
Q Consensus 306 ~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 385 (521)
....+++.+.. ..|.|||+.|.....+ +.++.|++++|
T Consensus 350 ~~~~~~~~l~~--------~~~~INg~~~~~~~~~----------------------------------~~~~~g~~e~W 387 (471)
T PRK10883 350 PIRSREISLGD--------DLPGINGALWDMNRID----------------------------------VTAQQGTWERW 387 (471)
T ss_pred CcceEEEEecC--------CcCccCCcccCCCcce----------------------------------eecCCCCEEEE
Confidence 11223444422 1378999998532111 35789999999
Q ss_pred EEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe----eeEEeecchh
Q 009960 386 VFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG----MWNLRSQLLQ 461 (521)
Q Consensus 386 vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG----~w~~HCHil~ 461 (521)
.|.|. +.|||||||+.||||++++.+.. ..+..|||||.|+ +.+.|+++++++| .||||||||+
T Consensus 388 ~~~n~--~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLe 455 (471)
T PRK10883 388 TVRAD--MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLE 455 (471)
T ss_pred EEECC--CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeeccccc
Confidence 99886 68999999999999999764221 1123699999996 4699999999887 8999999999
Q ss_pred hhhccceEEEEEeC
Q 009960 462 NWFLGQELYIRVHN 475 (521)
Q Consensus 462 H~d~GMm~~~~V~~ 475 (521)
|||.|||..|+|..
T Consensus 456 HeD~GMM~~~~V~~ 469 (471)
T PRK10883 456 MADRGSIGQLLVNP 469 (471)
T ss_pred ccccCCccCeEEec
Confidence 99999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.9e-59 Score=488.59 Aligned_cols=386 Identities=20% Similarity=0.235 Sum_probs=277.7
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCccc-CcccCCCCceEEEEEEcceeeeEEEecCchh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGT-NCPILPRKNWTYVFQVKDQIGSFFYFPSINF 79 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 79 (521)
++|||+||+++||+|+|+++|+|.+.|++||||+.++ +.+||++.. ++++.||++++|.|+. +++||||||+|.+.
T Consensus 60 ~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~-~~~gT~wyh~H~~~ 136 (451)
T COG2132 60 ALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQ-DVPGTYWYHPHTHG 136 (451)
T ss_pred cccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecC-CCCcceEeccCCCc
Confidence 5899999999999999999999988799999998664 679999877 9999999999999996 55779999999999
Q ss_pred hhcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhccCCCCCCCCCCeEEEcCcCCCCCCCCCCCce
Q 009960 80 QKAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMANTSLTAYNAIPDVILMNGKGPFGYQMTREPES 159 (521)
Q Consensus 80 q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~ 159 (521)
|+++||+|++||++....+. .+|.+..++..+|........... .... .....+..+|||+.. |.
T Consensus 137 Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~-~~~~--~~~~g~~~~vnG~~~---------p~ 201 (451)
T COG2132 137 QVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE-GPAM--GGFPGDTLLVNGAIL---------PF 201 (451)
T ss_pred hhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC-Cccc--cCCCCCeEEECCCcc---------ce
Confidence 99999999999999755444 347777788888876544332211 0111 223568899999776 55
Q ss_pred EEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEecccccc
Q 009960 160 FTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPKLIS 239 (521)
Q Consensus 160 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~ 239 (521)
+.+.. .+|||||+|+++.+.+.+++.+++|+||++||.+++|..+|.+.|+|||||||++++++ .+.+.+.+... .
T Consensus 202 ~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~~~~l~~~~~--~ 277 (451)
T COG2132 202 KAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GGAVTLTALGE--D 277 (451)
T ss_pred eecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CCeEEEEeccc--c
Confidence 55555 56999999999888889999999999999999999888899999999999999999984 67787877651 1
Q ss_pred CCCCCCceeEEEEEeCCCCCCCC---CCCCCCCCCCCcccccccccccccccccCCCCCCCCccccccccCcceEEEEec
Q 009960 240 TNDSSNLVGLGVLHYSNSKSQVT---GPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNPQGTFNVSNVTLSQTFILQG 316 (521)
Q Consensus 240 ~~~~~~~~~~ail~y~~~~~~~~---~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p~~~~~~~~~~~~~~~~l~~ 316 (521)
. .....+............ ......+ ..+. . .. .....+......+. ...+..+.+..
T Consensus 278 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~--~-~~--~~~~~~~~~~~~~~---------~~~~~~~~l~~ 338 (451)
T COG2132 278 M----PDTLKGFRAPNPILTPSYPVLNGRVGAP-TGDM--A-DH--APVGLLVTILVEPG---------PNRDTDFHLIG 338 (451)
T ss_pred C----CceeeeeeccccccccccccccccccCC-Ccch--h-hc--cccccchhhcCCCc---------ccccccchhhc
Confidence 1 111122222111100000 0000000 0000 0 00 00000000000000 00111111111
Q ss_pred cccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEecCCCcEEEEEEEcCCCCccc
Q 009960 317 SKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTGNHKGWIELVFNNNLDVIDS 396 (521)
Q Consensus 317 ~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~vi~N~~~~~HP 396 (521)
..+...|.+|++.|... ...+.++.|++++|+|+|.+.+.||
T Consensus 339 ----~~~~~~~~~n~~~~~~~----------------------------------~~~~~~~~G~~~~~~i~n~~~~~HP 380 (451)
T COG2132 339 ----GIGGYVWAINGKAFDDN----------------------------------RVTLIAKAGTRERWVLTNDTPMPHP 380 (451)
T ss_pred ----ccccccccccCccCCCC----------------------------------cCceeecCCCEEEEEEECCCCCccC
Confidence 12334688888877531 1124678999999999999999999
Q ss_pred eeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeEEeecchhhhhccceEEEEEe
Q 009960 397 WHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 397 ~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 474 (521)
|||||+.|+|++.+ .. .-...+.||||+.+.+++.++|+|.+++||.|+||||+++|++.|||..+.|.
T Consensus 381 ~HlHg~~F~v~~~~-~~--------~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 381 FHLHGHFFQVLSGD-AP--------APGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred eEEcCceEEEEecC-CC--------cccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 99999999999997 11 12234679999999999999999999999999999999999999999999885
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=7.9e-44 Score=354.23 Aligned_cols=235 Identities=17% Similarity=0.172 Sum_probs=189.3
Q ss_pred CCCCCeEEEecCCEEEEEEEECCC--CCeeEEecCcCCCCCCCCCCCccc-CcccCCCCceEEEEEEcceeeeEEEecCc
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLD--EPLLFTWNGIQQRLNSWQDGVSGT-NCPILPRKNWTYVFQVKDQIGSFFYFPSI 77 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~--~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~ 77 (521)
++|||+||+++||+|+|+|+|.+. .++++||||.. .+||++++ | |.||++++|+|++ +++||||||||.
T Consensus 55 ~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~ 126 (311)
T TIGR02376 55 SVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKA-TRPGAFVYHCAP 126 (311)
T ss_pred cccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEc-CCCEEEEEEcCC
Confidence 579999999999999999999985 58999999962 47888766 5 9999999999996 679999999994
Q ss_pred ----hhhhcCCceecEEEeCCCCCCCCCCCCCcceeEEeeeeccCCHHHHHHHhc-cCCCCCCCCCCeEEEcCcCCCCCC
Q 009960 78 ----NFQKAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDWFYDDYKKTRSMAN-TSLTAYNAIPDVILMNGKGPFGYQ 152 (521)
Q Consensus 78 ----~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~liNG~~~~~~~ 152 (521)
..|+.+||+|+|||++++.. +..|+|++|+++||+++.......... .........++.++|||+....
T Consensus 127 ~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-- 200 (311)
T TIGR02376 127 PGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-- 200 (311)
T ss_pred CCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCC--
Confidence 57999999999999986432 245899999999999875432111000 0000012356899999996521
Q ss_pred CCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCccccee--eeeEEecCCcEEEEEEEeCCCCcceE
Q 009960 153 MTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQIT--LRSLDVHVGQSYSVLVTADQNEADYY 230 (521)
Q Consensus 153 ~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~--~d~v~l~pGeR~dv~v~~~~~~g~~~ 230 (521)
.+.+++++|+++||||+|++..+.+.|+++|+.+++|+.||.++.+.. ++++.|+||||+||+|++++ +|.|+
T Consensus 201 ----~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~ 275 (311)
T TIGR02376 201 ----TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYA 275 (311)
T ss_pred ----CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEE
Confidence 146789999999999999999898899999999999999999997644 89999999999999999994 89999
Q ss_pred EEeccccccCCCCCCceeEEEEEeCCCC
Q 009960 231 IVASPKLISTNDSSNLVGLGVLHYSNSK 258 (521)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~ail~y~~~~ 258 (521)
++++...... .....++|+|++..
T Consensus 276 ~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 276 YVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred EECcHHHHHH----hCCCEEEEEECCCC
Confidence 9998653321 23467999998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.97 E-value=6.5e-32 Score=229.77 Aligned_cols=94 Identities=39% Similarity=0.796 Sum_probs=88.4
Q ss_pred CCCCCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCccc-CcccCCCCceEEEEEEcceeeeEEEecCchh
Q 009960 1 MFPGPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGT-NCPILPRKNWTYVFQVKDQIGSFFYFPSINF 79 (521)
Q Consensus 1 ~~PGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 79 (521)
++|||+|||++||+|+|+|+|+++++++|||||+++...+++||++++ ||+|.||++|+|+|++++++||||||||...
T Consensus 22 ~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~ 101 (117)
T PF07732_consen 22 QFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHG 101 (117)
T ss_dssp BSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTT
T ss_pred CCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCc
Confidence 589999999999999999999999999999999999888889999997 9999999999999998666999999999988
Q ss_pred hhcCCceecEEEeCC
Q 009960 80 QKAGGGFGPIRVNNR 94 (521)
Q Consensus 80 q~~~Gl~G~liV~~~ 94 (521)
|..+||+|+|||+++
T Consensus 102 ~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 102 QQVMGLYGAIIVEPP 116 (117)
T ss_dssp HHHTTEEEEEEEE-T
T ss_pred hhcCcCEEEEEEcCC
Confidence 878999999999985
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=1.8e-30 Score=229.76 Aligned_cols=108 Identities=31% Similarity=0.530 Sum_probs=98.2
Q ss_pred cccceeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEe
Q 009960 368 ATRGVSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFL 447 (521)
Q Consensus 368 ~~~~~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~a 447 (521)
.+.+...+.++.|++|+|+|+|.+...|||||||++|+|++++.+.++......++..+|.||||+.|+++++++|||++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~ 108 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA 108 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe
Confidence 34567789999999999999999999999999999999999998877655555788899999999999999999999999
Q ss_pred cCCeeeEEeecchhhhhccceEEEEEeC
Q 009960 448 DNPGMWNLRSQLLQNWFLGQELYIRVHN 475 (521)
Q Consensus 448 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 475 (521)
+|||.|+|||||++|++.|||+.+.|.+
T Consensus 109 ~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 109 DNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.95 E-value=1.1e-27 Score=216.56 Aligned_cols=151 Identities=36% Similarity=0.584 Sum_probs=122.2
Q ss_pred cceeEEeeeeccCCHHHHHH-HhccC--CCCCCCCCCeEEEcCcCCCCCCCC----CCCceEEEecCcEEEEEEEecCcc
Q 009960 106 AEFDLLIGDWFYDDYKKTRS-MANTS--LTAYNAIPDVILMNGKGPFGYQMT----REPESFTVTKGMTYRFRISNVGSV 178 (521)
Q Consensus 106 ~e~~l~l~d~~~~~~~~~~~-~~~~~--~~~~~~~~~~~liNG~~~~~~~~~----~~~p~~~v~~G~~~rlRliNa~~~ 178 (521)
.|++|+++||+++....+.. .+..+ ..+..+++++++|||++...|... ...+.+++++|++|||||||+|+.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 48899999999987665533 32221 123467899999999998877643 467899999999999999999999
Q ss_pred ceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCC
Q 009960 179 FSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSN 256 (521)
Q Consensus 179 ~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~ 256 (521)
..+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++++|.|+|++..............+.|+|+|++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999779999999952212111223567899999986
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.74 E-value=4.6e-18 Score=150.15 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=72.7
Q ss_pred CCCCeEEEecCCEEEEEEEECCC---CCeeEEecCcCCCCCCCCCCCccc-CcccCCC---C-c--eEEEEEEcceeeeE
Q 009960 2 FPGPLINSTTNDFVHVNVFNNLD---EPLLFTWNGIQQRLNSWQDGVSGT-NCPILPR---K-N--WTYVFQVKDQIGSF 71 (521)
Q Consensus 2 ~PGP~i~v~~Gd~v~v~~~N~l~---~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG---~-~--~~y~f~~~~~~Gt~ 71 (521)
.+||+|++++||+|+|+|+|.+. -...||+||......+.+||++.. ||+|.|+ + . .+++|++ .++|||
T Consensus 49 ~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f-~~aGty 127 (148)
T TIGR03095 49 LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHF-STAGTY 127 (148)
T ss_pred CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEEC-CCCeEE
Confidence 57999999999999999999964 346777777765555669999887 8988884 1 1 2445554 379999
Q ss_pred EEecCchhhhcCCceecEEEe
Q 009960 72 FYFPSINFQKAGGGFGPIRVN 92 (521)
Q Consensus 72 wYH~H~~~q~~~Gl~G~liV~ 92 (521)
|||||...|+.+||+|.|||+
T Consensus 128 wyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 128 WYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEcCChhHHHCCCEEEEEEC
Confidence 999999999999999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.70 E-value=4e-15 Score=148.54 Aligned_cols=245 Identities=13% Similarity=0.039 Sum_probs=156.9
Q ss_pred CCeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCcc-ceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEE
Q 009960 138 PDVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSV-FSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSY 216 (521)
Q Consensus 138 ~~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~ 216 (521)
.+.|++||+... |.+++++|++++++|.|.... ..+.+++|++. +.||... ...|.||+++
T Consensus 47 ~~~~~~nG~~pG--------P~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ 108 (311)
T TIGR02376 47 YQAMTFDGSVPG--------PLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETA 108 (311)
T ss_pred EEEEEECCcccC--------ceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeE
Confidence 357999999753 899999999999999998642 35588898874 4576531 2348999999
Q ss_pred EEEEEeCCCCcceEEEecccc--ccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCC
Q 009960 217 SVLVTADQNEADYYIVASPKL--ISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAAR 294 (521)
Q Consensus 217 dv~v~~~~~~g~~~i~~~~~~--~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (521)
.+.++++ .+|.||++++... ..+ ......+.|.+.... ..+. .+.+..+ ...+ |.+......
T Consensus 109 ty~F~~~-~~Gty~YH~H~~~~~~~q---~~~Gl~G~liV~~~~-----~~~~----~d~e~~l-~l~d--~~~~~~~~~ 172 (311)
T TIGR02376 109 TLRFKAT-RPGAFVYHCAPPGMVPWH---VVSGMNGAIMVLPRE-----GLPE----YDKEYYI-GESD--LYTPKDEGE 172 (311)
T ss_pred EEEEEcC-CCEEEEEEcCCCCchhHH---hhcCcceEEEeeccC-----CCcC----cceeEEE-eeee--Eeccccccc
Confidence 9999987 6999999998431 011 011223444444321 1111 0111000 0001 111000000
Q ss_pred CCCCccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeE
Q 009960 295 PNPQGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSV 374 (521)
Q Consensus 295 p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 374 (521)
. ..+..............++|||+.+... | .
T Consensus 173 ---~-----------~~~~~~~~~~~~~~~~~~~iNG~~~~~~--~---------------------------------~ 203 (311)
T TIGR02376 173 ---G-----------GAYEDDVAAMRTLTPTHVVFNGAVGALT--G---------------------------------D 203 (311)
T ss_pred ---c-----------ccccchHHHHhcCCCCEEEECCccCCCC--C---------------------------------C
Confidence 0 0000000000001123578999854210 0 1
Q ss_pred EecCCCcEEEEEEEcCCC-CccceeecCcceEEEeeccccCCCCCCCCCCCCCCC-cceEEEeCCCCEEEEEEEecCCee
Q 009960 375 VTGNHKGWIELVFNNNLD-VIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPV-VRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 375 ~~~~~g~~v~~vi~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~-~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
+.++.|++++|.|.|.+. ..+.||++|++|.+|..++....+ +. ..|++.|.||+.+.|.++++.||.
T Consensus 204 ~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~~~pG~ 273 (311)
T TIGR02376 204 NALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTFEQPGV 273 (311)
T ss_pred cccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEeCCCeE
Confidence 256789999999999984 679999999999999996554321 12 269999999999999999999999
Q ss_pred eEEeecchhhh-hccceEEEEEeC
Q 009960 453 WNLRSQLLQNW-FLGQELYIRVHN 475 (521)
Q Consensus 453 w~~HCHil~H~-d~GMm~~~~V~~ 475 (521)
|++|||...+. ..||++.++|..
T Consensus 274 y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 274 YAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred EEEECcHHHHHHhCCCEEEEEECC
Confidence 99999998887 679999998853
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.51 E-value=5.2e-13 Score=143.24 Aligned_cols=218 Identities=14% Similarity=0.082 Sum_probs=138.4
Q ss_pred CeEEEecCCEEEEEEEECCC-CCeeEEecCcCCCCCCCCCCCcc----c-CcccCCCCceEEEEEEcceeeeEEEecCch
Q 009960 5 PLINSTTNDFVHVNVFNNLD-EPLLFTWNGIQQRLNSWQDGVSG----T-NCPILPRKNWTYVFQVKDQIGSFFYFPSIN 78 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~ 78 (521)
+++.+++|+++++|+.|... ....+++.|..+.. ...||.+. + ...|.|||+|+..+++ .+.|.|+..+...
T Consensus 260 ~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~V-Ia~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~~g~~~i~a~~~ 337 (587)
T TIGR01480 260 WTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTV-VAVDGQYVHPVSVDEFRIAPAETFDVIVEP-TGDDAFTIFAQDS 337 (587)
T ss_pred ceEEECCCCEEEEEEEecCCCceEEEEECCCEEEE-EEcCCcCcCceEeCeEEEcCcceeEEEEec-CCCceEEEEEEec
Confidence 57899999999999999884 55788998887653 46899864 2 4569999999999996 3578999887543
Q ss_pred hhhcCCceecEEEeCCC-CCCCC-CCC----CCcceeE------------Eee-----ee----------ccC-------
Q 009960 79 FQKAGGGFGPIRVNNRI-VISVP-FPK----PEAEFDL------------LIG-----DW----------FYD------- 118 (521)
Q Consensus 79 ~q~~~Gl~G~liV~~~~-~~~~~-~~~----~~~e~~l------------~l~-----d~----------~~~------- 118 (521)
.. .|...+.+..... ..+.| .+. ...+.-+ .+. +. .+.
T Consensus 338 ~~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (587)
T TIGR01480 338 DR--TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDAS 415 (587)
T ss_pred CC--CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCcccccccccc
Confidence 21 1233322222111 11111 000 0000000 000 00 000
Q ss_pred ---------------------------------CHHH-HH-HHhcc-------CCCC--------CCCCCCeEEEcCcCC
Q 009960 119 ---------------------------------DYKK-TR-SMANT-------SLTA--------YNAIPDVILMNGKGP 148 (521)
Q Consensus 119 ---------------------------------~~~~-~~-~~~~~-------~~~~--------~~~~~~~~liNG~~~ 148 (521)
.... +. ..+.+ ...+ .......|+|||+.+
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~~~wtiNG~~~ 495 (587)
T TIGR01480 416 PKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMERFAWSFDGEAF 495 (587)
T ss_pred ccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCceeEEEECCccC
Confidence 0000 00 00000 0000 000122499999988
Q ss_pred CCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcc
Q 009960 149 FGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEAD 228 (521)
Q Consensus 149 ~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~ 228 (521)
. ..+.++++.|++|||||+|.+.. .+++|+|||.|.++..||.+ +...+++.|.|||++++.|+++ .+|.
T Consensus 496 ~------~~~pl~v~~Gervri~l~N~t~~-~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~~~f~ad-~pG~ 565 (587)
T TIGR01480 496 G------LKTPLRFNYGERLRVVLVNDTMM-AHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRSFRVTAD-ALGR 565 (587)
T ss_pred C------CCCceEecCCCEEEEEEECCCCC-CcceeEcCceeeeecCCCcc--cccCCceeeCCCCEEEEEEECC-CCeE
Confidence 4 12468999999999999998865 45999999999999888864 3345889999999999999999 7999
Q ss_pred eEEEeccc
Q 009960 229 YYIVASPK 236 (521)
Q Consensus 229 ~~i~~~~~ 236 (521)
|+++++..
T Consensus 566 w~~HCH~l 573 (587)
T TIGR01480 566 WAYHCHML 573 (587)
T ss_pred EEEcCCCH
Confidence 99999853
No 24
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.20 E-value=1e-09 Score=118.30 Aligned_cols=239 Identities=15% Similarity=0.102 Sum_probs=144.5
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEE-EecCCcccceeeeeEEecCCcEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLV-ETEGSYTNQITLRSLDVHVGQSYS 217 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~l~pGeR~d 217 (521)
..+++||+... |.|+++.|+++++++.|--...+ .+|.||....-- ..||.+ .+..-.|.||+.+.
T Consensus 23 ~~~~~NG~~PG--------P~i~~~~GD~v~v~v~N~l~~~t-siHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~~ 89 (539)
T TIGR03389 23 SILTVNGKFPG--------PTLYAREGDTVIVNVTNNVQYNV-TIHWHGVRQLRNGWADGPA----YITQCPIQPGQSYV 89 (539)
T ss_pred EEEEECCcccC--------CEEEEEcCCEEEEEEEeCCCCCe-eEecCCCCCCCCCCCCCCc----ccccCCcCCCCeEE
Confidence 47999999864 99999999999999999877544 666666532111 258864 12233589999999
Q ss_pred EEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCC
Q 009960 218 VLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNP 297 (521)
Q Consensus 218 v~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p 297 (521)
..+++.+.+|.||.+.+..... ....|-|...+... .+.|......+.. ..+.......
T Consensus 90 Y~f~~~~~~GT~WYHsH~~~~~------~Gl~G~lIV~~~~~---~~~~~~~~d~e~~----------l~l~Dw~~~~-- 148 (539)
T TIGR03389 90 YNFTITGQRGTLWWHAHISWLR------ATVYGAIVILPKPG---VPYPFPKPDREVP----------IILGEWWNAD-- 148 (539)
T ss_pred EEEEecCCCeeEEEecCchhhh------ccceEEEEEcCCCC---CCCCCCCCCceEE----------EEecccccCC--
Confidence 9999865799999999863211 12233333333211 0111100000110 0010000000
Q ss_pred CccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEec
Q 009960 298 QGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTG 377 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 377 (521)
... .... . +.... ...-...+.|||+....... .......+++
T Consensus 149 ~~~------~~~~-~-~~~~~-~~~~~d~~liNG~~~~~~~~----------------------------~~~~~~~i~v 191 (539)
T TIGR03389 149 VEA------VINQ-A-NQTGG-APNVSDAYTINGHPGPLYNC----------------------------SSKDTFKLTV 191 (539)
T ss_pred HHH------HHHH-H-HhcCC-CCCccceEEECCCcCCCCCC----------------------------CCCCceEEEE
Confidence 000 0000 0 00000 00011247889875321000 0012346789
Q ss_pred CCCcEEEEEEEcCC-CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-CeeeEE
Q 009960 378 NHKGWIELVFNNNL-DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN-PGMWNL 455 (521)
Q Consensus 378 ~~g~~v~~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn-pG~w~~ 455 (521)
+.|++++|+|.|.+ ...+-|||+||+|.||+.++.. ..|...|++.|.+|+.+.|.++++. +|.|.+
T Consensus 192 ~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~-----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i 260 (539)
T TIGR03389 192 EPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATY-----------TKPFKTKTIVIGPGQTTNVLLTADQSPGRYFM 260 (539)
T ss_pred CCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcc-----------cCceEeCeEEecCCCEEEEEEECCCCCceEEE
Confidence 99999999999998 5668999999999999997532 2456789999999999999999986 899988
Q ss_pred eecc
Q 009960 456 RSQL 459 (521)
Q Consensus 456 HCHi 459 (521)
+-+.
T Consensus 261 ~~~~ 264 (539)
T TIGR03389 261 AARP 264 (539)
T ss_pred EEec
Confidence 7654
No 25
>PLN02835 oxidoreductase
Probab=99.18 E-value=2.2e-09 Score=114.97 Aligned_cols=225 Identities=16% Similarity=0.167 Sum_probs=137.2
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEE-EEecCCcccceeeeeEEecCCcEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVL-VETEGSYTNQITLRSLDVHVGQSYS 217 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~l~pGeR~d 217 (521)
..++|||+... |.|++++|+++++++.|-....+ .+|.||..+.- -..||.+. ..-.|.||+.+.
T Consensus 49 ~~~~~NG~~PG--------P~I~~~~GD~v~v~v~N~L~~~t-tiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~ 114 (539)
T PLN02835 49 QVILINGQFPG--------PRLDVVTNDNIILNLINKLDQPF-LLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYT 114 (539)
T ss_pred EEEEECCcCCC--------CCEEEECCCEEEEEEEeCCCCCC-cEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEE
Confidence 47999999764 99999999999999999976544 66666655432 24699643 134799999999
Q ss_pred EEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCC
Q 009960 218 VLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNP 297 (521)
Q Consensus 218 v~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p 297 (521)
..+++.+.+|+||.+++...... ....+. ++....... +.|......+....+.+ |... .
T Consensus 115 Y~F~~~~q~GT~WYHsH~~~q~~---~Gl~G~-lIV~~~~~~----~~p~~~~d~e~~l~l~D-----w~~~-----~-- 174 (539)
T PLN02835 115 YKFQTKDQIGTFTYFPSTLFHKA---AGGFGA-INVYERPRI----PIPFPLPDGDFTLLVGD-----WYKT-----S-- 174 (539)
T ss_pred EEEEECCCCEeEEEEeCccchhc---Ccccce-eEEeCCCCC----CcCCCCCCceEEEEeec-----cccC-----C--
Confidence 99987657999999998532110 012222 222221111 11110000011000000 0000 0
Q ss_pred CccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEec
Q 009960 298 QGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTG 377 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 377 (521)
.. ..... +.... ...-.....|||+.. ..+.+
T Consensus 175 ~~-------~~~~~--~~~g~-~~~~~d~~liNG~~~--------------------------------------~~~~v 206 (539)
T PLN02835 175 HK-------TLQQR--LDSGK-VLPFPDGVLINGQTQ--------------------------------------STFSG 206 (539)
T ss_pred HH-------HHHHH--hhcCC-CCCCCceEEEccccC--------------------------------------ceEEE
Confidence 00 00000 00000 000012356777531 12567
Q ss_pred CCCcEEEEEEEcCC-CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-CeeeEE
Q 009960 378 NHKGWIELVFNNNL-DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN-PGMWNL 455 (521)
Q Consensus 378 ~~g~~v~~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn-pG~w~~ 455 (521)
+.|++++|+|.|.+ ....-||+.||+|.||+.++... .|...|++.|.+|+...|.++++. +|.|-+
T Consensus 207 ~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v-----------~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i 275 (539)
T PLN02835 207 DQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVAVLVTLNQSPKDYYI 275 (539)
T ss_pred CCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccC-----------CCceeeEEEECcCceEEEEEEcCCCCCcEEE
Confidence 89999999999998 45799999999999999976532 244679999999999999999975 687766
Q ss_pred e
Q 009960 456 R 456 (521)
Q Consensus 456 H 456 (521)
+
T Consensus 276 ~ 276 (539)
T PLN02835 276 V 276 (539)
T ss_pred E
Confidence 6
No 26
>PRK10965 multicopper oxidase; Provisional
Probab=99.13 E-value=4.3e-09 Score=112.27 Aligned_cols=224 Identities=17% Similarity=0.152 Sum_probs=133.1
Q ss_pred CCeEEEecCCEEEEEEEECCC-CCeeEEe-cCcCCCCCCCCCCCcc-----c-CcccCCCCceEEEEEEcceeeeEEEec
Q 009960 4 GPLINSTTNDFVHVNVFNNLD-EPLLFTW-NGIQQRLNSWQDGVSG-----T-NCPILPRKNWTYVFQVKDQIGSFFYFP 75 (521)
Q Consensus 4 GP~i~v~~Gd~v~v~~~N~l~-~~~~iH~-HG~~~~~~~~~DG~~~-----~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~ 75 (521)
.|.+.++ |.++++|+.|... ....+.+ .|..+. ....||.+. + ...|.|||+++..+++. +.|.++...
T Consensus 222 ~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~-vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~-~~~~~~l~~ 298 (523)
T PRK10965 222 YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLY-VIASDGGLLAEPVKVSELPILMGERFEVLVDTS-DGKAFDLVT 298 (523)
T ss_pred cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEE-EEEeCCCcccCccEeCeEEECccceEEEEEEcC-CCceEEEEE
Confidence 4777775 6699999999974 4556766 454332 256899642 1 45699999999999974 467776654
Q ss_pred CchhhhcCC------ceecEEEeCCC--C-CCCC--------CCC----CCcceeEEeeeecc---------CCH-HHHH
Q 009960 76 SINFQKAGG------GFGPIRVNNRI--V-ISVP--------FPK----PEAEFDLLIGDWFY---------DDY-KKTR 124 (521)
Q Consensus 76 H~~~q~~~G------l~G~liV~~~~--~-~~~~--------~~~----~~~e~~l~l~d~~~---------~~~-~~~~ 124 (521)
-...+...+ -+-.+.|.... . ...| .+. ..+.+.+.+..+.- ... ....
T Consensus 299 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~ 378 (523)
T PRK10965 299 LPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMA 378 (523)
T ss_pred ecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhhccccccccccc
Confidence 321111100 11123333211 0 0000 000 01223333321100 000 0000
Q ss_pred H--------Hh--------ccC--CCCC-CCCCCeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEE
Q 009960 125 S--------MA--------NTS--LTAY-NAIPDVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRI 185 (521)
Q Consensus 125 ~--------~~--------~~~--~~~~-~~~~~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i 185 (521)
. .+ ..+ ..+. ......++|||+.+.. ..+.++++.|++.+|+|+|.+....++|||
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~-----~~~~~~~~~G~~e~w~i~N~~~~~~Hp~Hl 453 (523)
T PRK10965 379 GMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM-----NKPMFAAKKGQYERWVISGVGDMMLHPFHI 453 (523)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCeECCC-----CCcceecCCCCEEEEEEEeCCCCCccCeEE
Confidence 0 00 000 0000 0011225899998731 235678999999999999998755679999
Q ss_pred cCceeEEEEecCCccc---ceeeeeEEecCCcEEEEEEEeCC---CCcceEEEeccc
Q 009960 186 QNHKMVLVETEGSYTN---QITLRSLDVHVGQSYSVLVTADQ---NEADYYIVASPK 236 (521)
Q Consensus 186 ~gh~~~via~DG~~~~---p~~~d~v~l~pGeR~dv~v~~~~---~~g~~~i~~~~~ 236 (521)
||+.|+|++.||.+.. +...|||.+.+ ++++++++++. .+|.|.++++..
T Consensus 454 Hg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 454 HGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred eCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCch
Confidence 9999999999999875 34689999976 88999999973 457999998864
No 27
>PLN02354 copper ion binding / oxidoreductase
Probab=99.11 E-value=5.7e-09 Score=111.95 Aligned_cols=234 Identities=13% Similarity=0.075 Sum_probs=142.0
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEE-EEecCCcccceeeeeEEecCCcEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVL-VETEGSYTNQITLRSLDVHVGQSYS 217 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~l~pGeR~d 217 (521)
..++|||+... |.|++++|+++++++.|...... .+|.||....- -..||.+. ..-.|.||+.+.
T Consensus 47 ~~~~iNGq~PG--------P~I~~~~GD~v~V~v~N~l~~~t-tiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~ 112 (552)
T PLN02354 47 QVILINGQFPG--------PNINSTSNNNIVINVFNNLDEPF-LLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFT 112 (552)
T ss_pred EEEEECCCCcC--------CcEEEeCCCEEEEEEEECCCCCc-ccccccccCCCCcccCCCcC-----CcCCCCCCCcEE
Confidence 47999999764 99999999999999999976433 55555544322 24799652 234799999999
Q ss_pred EEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCC
Q 009960 218 VLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNP 297 (521)
Q Consensus 218 v~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p 297 (521)
..+++.+.+|+||.+++..... .....+-|...+... .+.|......+.... +.......
T Consensus 113 Y~F~~~~q~GT~WYHsH~~~Q~-----~~Gl~G~lII~~~~~---~~~p~~~~d~e~~l~----------l~Dw~~~~-- 172 (552)
T PLN02354 113 YHFQPKDQIGSYFYYPSTGMHR-----AAGGFGGLRVNSRLL---IPVPYADPEDDYTVL----------IGDWYTKS-- 172 (552)
T ss_pred EEEEeCCCCcceEEecCcccee-----cCCccceEEEcCCcC---CCCCCCCcCceEEEE----------eeeeccCC--
Confidence 9999865689999998753111 111222222222211 011110000011000 00000000
Q ss_pred CccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEec
Q 009960 298 QGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTG 377 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 377 (521)
... .... +.. ...........|||+..... ......+++
T Consensus 173 ~~~-------~~~~--~~~-g~~~~~~d~~liNG~~~~~~-------------------------------~~~~~~~~v 211 (552)
T PLN02354 173 HTA-------LKKF--LDS-GRTLGRPDGVLINGKSGKGD-------------------------------GKDEPLFTM 211 (552)
T ss_pred HHH-------HHHH--Hhc-CCCCCCCCeEEEeCCcCCCC-------------------------------CCCceEEEE
Confidence 000 0000 000 00001123467888642100 012345789
Q ss_pred CCCcEEEEEEEcCC-CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-CeeeEE
Q 009960 378 NHKGWIELVFNNNL-DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN-PGMWNL 455 (521)
Q Consensus 378 ~~g~~v~~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn-pG~w~~ 455 (521)
+.|++++|+|.|.+ ....-||+.||+|.||+.++... .|...|++.|.+|+...|.++++. +|.|.+
T Consensus 212 ~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i 280 (552)
T PLN02354 212 KPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHV-----------LQNDYDSLDVHVGQCFSVLVTANQAPKDYYM 280 (552)
T ss_pred CCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCccc-----------CCcceeEEEEccCceEEEEEECCCCCCcEEE
Confidence 99999999999998 56699999999999999976532 244579999999999999999985 788777
Q ss_pred eec
Q 009960 456 RSQ 458 (521)
Q Consensus 456 HCH 458 (521)
.-.
T Consensus 281 ~a~ 283 (552)
T PLN02354 281 VAS 283 (552)
T ss_pred EEe
Confidence 655
No 28
>PLN02991 oxidoreductase
Probab=99.10 E-value=6.6e-09 Score=110.89 Aligned_cols=223 Identities=15% Similarity=0.107 Sum_probs=135.8
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeE-EEEecCCcccceeeeeEEecCCcEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMV-LVETEGSYTNQITLRSLDVHVGQSYS 217 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~-via~DG~~~~p~~~d~v~l~pGeR~d 217 (521)
..++|||+... |.|+++.|+++++++.|...... .+|.||.... --..||.+. + .-.|.||+++.
T Consensus 48 ~~~~vNG~~PG--------P~I~~~~GD~v~V~V~N~L~~~t-tiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~sft 113 (543)
T PLN02991 48 QGILINGKFPG--------PDIISVTNDNLIINVFNHLDEPF-LISWSGIRNWRNSYQDGVYG----T-TCPIPPGKNYT 113 (543)
T ss_pred EEEEEcCCCCC--------CcEEEECCCEEEEEecCCCCCCc-cEEECCcccCCCccccCCCC----C-CCccCCCCcEE
Confidence 47999999874 99999999999999999976433 6666665532 234799643 1 34799999999
Q ss_pred EEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCC
Q 009960 218 VLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNP 297 (521)
Q Consensus 218 v~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p 297 (521)
..+++++.+|+||.+++..... .....+-|...+... .+.|......+....+.+ |... .
T Consensus 114 Y~F~~~~q~GT~WYHsH~~~q~-----~~Gl~G~lIV~~~~~---~~~p~~~~d~d~~i~l~D-----W~~~-----~-- 173 (543)
T PLN02991 114 YALQVKDQIGSFYYFPSLGFHK-----AAGGFGAIRISSRPL---IPVPFPAPADDYTVLIGD-----WYKT-----N-- 173 (543)
T ss_pred EEEEeCCCCcceEEecCcchhh-----hCCCeeeEEEeCCcc---cCcccccccceeEEEecc-----eecC-----C--
Confidence 9999965799999999853211 111223232222211 111110000011000000 0000 0
Q ss_pred CccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEec
Q 009960 298 QGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTG 377 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 377 (521)
.. ..... +... ..........|||+.. ...+.+
T Consensus 174 ~~-------~~~~~--~~~~-~~~~~~d~~liNG~~~-------------------------------------~~~~~v 206 (543)
T PLN02991 174 HK-------DLRAQ--LDNG-GKLPLPDGILINGRGS-------------------------------------GATLNI 206 (543)
T ss_pred HH-------HHHHH--hhcC-CCCCCCCEEEEccCCC-------------------------------------CceEEE
Confidence 00 00000 0000 0000112456777631 113678
Q ss_pred CCCcEEEEEEEcCCC-CccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-Ceee
Q 009960 378 NHKGWIELVFNNNLD-VIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN-PGMW 453 (521)
Q Consensus 378 ~~g~~v~~vi~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn-pG~w 453 (521)
+.|++++|+|+|.+. ..+-|+|.||+|+||+.++.. ..|...|++.|.+|+...|.+++++ +|.|
T Consensus 207 ~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~-----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y 273 (543)
T PLN02991 207 EPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTH-----------TIQTPFSSLDVHVGQSYSVLITADQPAKDY 273 (543)
T ss_pred CCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCcc-----------ccceeeeEEEEcCCcEEEEEEECCCCCCcE
Confidence 899999999999984 458999999999999987542 1245679999999999999999987 4643
No 29
>PLN02168 copper ion binding / pectinesterase
Probab=99.09 E-value=9e-09 Score=110.04 Aligned_cols=220 Identities=13% Similarity=0.087 Sum_probs=133.9
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEE-EecCCcccceeeeeEEecCCcEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLV-ETEGSYTNQITLRSLDVHVGQSYS 217 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~l~pGeR~d 217 (521)
..++|||+... |.|+++.|+++++++.|-....+ .+|.||....-- ..||.+- ..-.|.||+++.
T Consensus 46 ~~~~vNG~~PG--------P~I~~~~GD~v~V~v~N~L~~~t-tiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sft 111 (545)
T PLN02168 46 QVIVINDMFPG--------PLLNATANDVINVNIFNNLTEPF-LMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWT 111 (545)
T ss_pred EEEEECCcCCC--------CcEEEECCCEEEEEEEeCCCCCc-cEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEE
Confidence 47899999774 99999999999999999987544 666666543221 2599653 124799999999
Q ss_pred EEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCC
Q 009960 218 VLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNP 297 (521)
Q Consensus 218 v~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p 297 (521)
..+++++.+|+||.+++..... .....+-|...+... .+.|......+.+..+.. |....
T Consensus 112 Y~F~~~~q~GT~WYHsH~~~Q~-----~~GL~G~lII~~~~~---~~~p~~~~d~e~~l~l~D-----w~~~~------- 171 (545)
T PLN02168 112 YRFQVKDQIGSYFYFPSLLLQK-----AAGGYGAIRIYNPEL---VPVPFPKPDEEYDILIGD-----WFYAD------- 171 (545)
T ss_pred EEEEeCCCCceEEEecChhhhh-----hCcceeEEEEcCCcc---cCcCcCcccceeeEEEEe-----cCCCC-------
Confidence 9999965699999999853111 112223333333211 111110000111100000 00000
Q ss_pred CccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEec
Q 009960 298 QGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTG 377 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 377 (521)
.. .... .+.... .........|||+.-. ...+.+
T Consensus 172 ~~-------~~~~--~~~~g~-~~~~~d~~liNG~~~~------------------------------------~~~~~v 205 (545)
T PLN02168 172 HT-------VMRA--SLDNGH-SLPNPDGILFNGRGPE------------------------------------ETFFAF 205 (545)
T ss_pred HH-------HHHh--hhhcCC-CCCCCCEEEEeccCCC------------------------------------cceEEe
Confidence 00 0000 000000 0001123667775310 124678
Q ss_pred CCCcEEEEEEEcCC-CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC
Q 009960 378 NHKGWIELVFNNNL-DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN 449 (521)
Q Consensus 378 ~~g~~v~~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn 449 (521)
+.|++++|+|.|.+ ...+-|++.||+|+||+.++... .|...|++.|.+|+...+.+++++
T Consensus 206 ~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 206 EPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYV-----------QKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred CCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeEC-----------CCceeeEEEEcCCceEEEEEEcCC
Confidence 89999999999988 45699999999999999876432 245679999999999999999974
No 30
>PLN02792 oxidoreductase
Probab=99.05 E-value=1.4e-08 Score=108.47 Aligned_cols=227 Identities=15% Similarity=0.150 Sum_probs=137.5
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEE---ecCCcccceeeeeEEecCCcE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVE---TEGSYTNQITLRSLDVHVGQS 215 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via---~DG~~~~p~~~d~v~l~pGeR 215 (521)
..++|||+... |.|++++|+++++++.|-..... .+|.|| +.+.. .||.+. + +-.|.||+.
T Consensus 36 ~~~~vNGq~PG--------P~I~~~~GD~v~V~v~N~L~~~t-tiHWHG--l~q~~~~~~DGv~~----t-qcPI~PG~s 99 (536)
T PLN02792 36 RGILINGQFPG--------PEIRSLTNDNLVINVHNDLDEPF-LLSWNG--VHMRKNSYQDGVYG----T-TCPIPPGKN 99 (536)
T ss_pred EEEEECCCCCC--------CcEEEECCCEEEEEEEeCCCCCc-CEeCCC--cccCCCCccCCCCC----C-cCccCCCCc
Confidence 47999999774 99999999999999999876433 444444 44443 799643 1 247899999
Q ss_pred EEEEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCC
Q 009960 216 YSVLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARP 295 (521)
Q Consensus 216 ~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p 295 (521)
+...+++++.+|+||.+++...... ....+ +++.+.....+ .+.+. + ..+... .+.......
T Consensus 100 ftY~F~~~~q~GT~WYHsH~~~q~~---~Gl~G-~liI~~~~~~~--~p~~~-~-d~e~~i----------~l~Dw~~~~ 161 (536)
T PLN02792 100 YTYDFQVKDQVGSYFYFPSLAVQKA---AGGYG-SLRIYSLPRIP--VPFPE-P-AGDFTF----------LIGDWYRRN 161 (536)
T ss_pred EEEEEEeCCCccceEEecCcchhhh---ccccc-ceEEeCCcccC--cCCCc-c-cceeEE----------EecccccCC
Confidence 9999998656999999998531110 01222 23233221110 01110 0 001100 000000000
Q ss_pred CCCccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEE
Q 009960 296 NPQGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVV 375 (521)
Q Consensus 296 ~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 375 (521)
.. ..... +..............|||+... ....+
T Consensus 162 --~~-------~~~~~--~~~g~~~~~~~d~~liNG~~~~-----------------------------------~~~~~ 195 (536)
T PLN02792 162 --HT-------TLKKI--LDGGRKLPLMPDGVMINGQGVS-----------------------------------YVYSI 195 (536)
T ss_pred --HH-------HHHHH--hhccCcCCCCCCEEEEeccCCC-----------------------------------CcceE
Confidence 00 00000 0000000001124677876321 01246
Q ss_pred ecCCCcEEEEEEEcCC-CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-Ceee
Q 009960 376 TGNHKGWIELVFNNNL-DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN-PGMW 453 (521)
Q Consensus 376 ~~~~g~~v~~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn-pG~w 453 (521)
.++.|++++|+|.|.+ ....-|++.||+|.||+.++... .|...|++.|.+|+...|.++++. +|.|
T Consensus 196 ~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydVlV~a~~~~g~Y 264 (536)
T PLN02792 196 TVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSVLVTMDQPPQNY 264 (536)
T ss_pred EECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEEEEEcCCCCceE
Confidence 7889999999999998 45689999999999999976532 244569999999999999999976 5776
Q ss_pred EEe
Q 009960 454 NLR 456 (521)
Q Consensus 454 ~~H 456 (521)
.+.
T Consensus 265 ~i~ 267 (536)
T PLN02792 265 SIV 267 (536)
T ss_pred EEE
Confidence 655
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.00 E-value=2.2e-08 Score=108.00 Aligned_cols=229 Identities=10% Similarity=0.031 Sum_probs=135.5
Q ss_pred eEEEecCCEEEEEEEECC-CCCeeEEecCcCCCCCCCCCCCccc-----CcccCCCCceEEEEEEccee-eeEEEecCch
Q 009960 6 LINSTTNDFVHVNVFNNL-DEPLLFTWNGIQQRLNSWQDGVSGT-----NCPILPRKNWTYVFQVKDQI-GSFFYFPSIN 78 (521)
Q Consensus 6 ~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~~~-----q~~i~pG~~~~y~f~~~~~~-Gt~wYH~H~~ 78 (521)
+|.|++|+++++|+.|.. .....+++.|..+.. .+.||.+.. ...|.|||+++..+++.+.+ |.||-..-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 489999999999999987 567788888887643 578998542 45699999999999974334 5899986543
Q ss_pred hhhc-CCceecEEEeC-CCCCCCC-C-----CCCCc-----ceeEE-eeee-ccCCHHHHHHHhccCCCCC-CCCCCeEE
Q 009960 79 FQKA-GGGFGPIRVNN-RIVISVP-F-----PKPEA-----EFDLL-IGDW-FYDDYKKTRSMANTSLTAY-NAIPDVIL 142 (521)
Q Consensus 79 ~q~~-~Gl~G~liV~~-~~~~~~~-~-----~~~~~-----e~~l~-l~d~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l 142 (521)
.+.. .....+++... ......+ . +..+. +..+. +... ..............-..+. ......|.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 3211 11112333322 1111100 0 00000 00000 0000 0000000000000000000 00112367
Q ss_pred EcCcCCCCCC-------------------C-------------------CCCCceEEEecCcEEEEEEEecCc-----cc
Q 009960 143 MNGKGPFGYQ-------------------M-------------------TREPESFTVTKGMTYRFRISNVGS-----VF 179 (521)
Q Consensus 143 iNG~~~~~~~-------------------~-------------------~~~~p~~~v~~G~~~rlRliNa~~-----~~ 179 (521)
+||..+.... . ....-++.++.|++|.+.|.|.+. ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 8877653000 0 001134788899999999999752 34
Q ss_pred eeeEEEcCceeEEEEec-CCc-----------ccceeeeeEEecCCcEEEEEEEeCCCCcceEEEeccc
Q 009960 180 SFNFRIQNHKMVLVETE-GSY-----------TNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPK 236 (521)
Q Consensus 180 ~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 236 (521)
.++||||||+|+|++.+ |.+ ..|...||+.+.++.-+-|-++++ +||.|.++++..
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~ 510 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIE 510 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccch
Confidence 57999999999999987 432 137789999999999999999998 799999999864
No 32
>PRK10883 FtsI repressor; Provisional
Probab=98.98 E-value=6.1e-08 Score=102.50 Aligned_cols=227 Identities=17% Similarity=0.157 Sum_probs=133.8
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSV 218 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv 218 (521)
..+.+||+... |+|++++|+++++++.|.-...+ .+|.||....-- .||+.- ..|.||++++.
T Consensus 66 ~v~~~ng~~pG--------Ptir~~~Gd~v~v~v~N~L~~~t-tiHwHGl~~~~~-~~~g~~-------~~I~PG~~~~y 128 (471)
T PRK10883 66 SVWGINGRYLG--------PTIRVWKGDDVKLIYSNRLTEPV-SMTVSGLQVPGP-LMGGPA-------RMMSPNADWAP 128 (471)
T ss_pred eEEEECCcccC--------CeEEEECCCEEEEEEEeCCCCCC-ceeECCccCCCC-CCCCcc-------ccCCCCCeEEE
Confidence 47999998663 99999999999999999877544 777777653211 134321 13889999999
Q ss_pred EEEeCCCCcceEEEeccccccCCC-CCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCC
Q 009960 219 LVTADQNEADYYIVASPKLISTND-SSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNP 297 (521)
Q Consensus 219 ~v~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p 297 (521)
.+..++.+|+||.+.+........ .....+. ++..+.... ..++|..-...+....+. + +.+...
T Consensus 129 ~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~-lII~d~~~~--~~~~p~~~~~~d~~l~l~---D--~~~~~~------ 194 (471)
T PRK10883 129 VLPIRQNAATCWYHANTPNRMAQHVYNGLAGM-WLVEDEVSK--SLPIPNHYGVDDFPVIIQ---D--KRLDNF------ 194 (471)
T ss_pred EEecCCCceeeEEccCCCCchhhhHhcCCeEE-EEEeCCccc--ccCCcccCCCcceeEEee---e--eeeccC------
Confidence 998887899999998853211000 0112222 222222111 011111000001100000 0 000000
Q ss_pred CccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEec
Q 009960 298 QGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVTG 377 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 377 (521)
+ ...... ....+ .......|||+.. +.+.+
T Consensus 195 -g-----~~~~~~----~~~~g--~~gd~~lvNG~~~--------------------------------------p~~~v 224 (471)
T PRK10883 195 -G-----TPEYNE----PGSGG--FVGDTLLVNGVQS--------------------------------------PYVEV 224 (471)
T ss_pred -C-----Cccccc----cccCC--ccCCeeEECCccC--------------------------------------CeEEe
Confidence 0 000000 00000 0012366777632 12455
Q ss_pred CCCcEEEEEEEcCCC-Cccceee-cCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeEE
Q 009960 378 NHKGWIELVFNNNLD-VIDSWHL-DGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWNL 455 (521)
Q Consensus 378 ~~g~~v~~vi~N~~~-~~HP~Hl-HG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~~ 455 (521)
+.+ +++|+|.|.+. ...-+++ +||.|+||+.++|.+. .|...|.+.+.||+.+.|.+++++.+.|.+
T Consensus 225 ~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~----------~P~~~~~l~l~pGeR~dvlVd~~~~~~~~l 293 (471)
T PRK10883 225 SRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLP----------APVSVKQLSLAPGERREILVDMSNGDEVSI 293 (471)
T ss_pred cCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCccc----------CCcEeCeEEECCCCeEEEEEECCCCceEEE
Confidence 544 68999999984 5578888 8999999999877543 355679999999999999999988788888
Q ss_pred ee
Q 009960 456 RS 457 (521)
Q Consensus 456 HC 457 (521)
++
T Consensus 294 ~~ 295 (471)
T PRK10883 294 TA 295 (471)
T ss_pred EC
Confidence 77
No 33
>PLN02604 oxidoreductase
Probab=98.93 E-value=4.1e-09 Score=113.94 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=71.4
Q ss_pred EEecCCCcEEEEEEEcCC-CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCee
Q 009960 374 VVTGNHKGWIELVFNNNL-DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
.++++.|++|++.+.|.. ...|+||+||... .+. .|.. ..+......|+||++.+++|+++++|.
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~---~~~D---------G~~~~tq~~i~pg~s~~y~f~~~~~Gt 121 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGT---PWFD---------GTEGVTQCPILPGETFTYEFVVDRPGT 121 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCC---cccc---------CCCccccCccCCCCeEEEEEEcCCCEE
Confidence 367889999999999996 5789999999942 111 1100 001124557899999999999999999
Q ss_pred eEEeecchhhhhccceEEEEEeCCC
Q 009960 453 WNLRSQLLQNWFLGQELYIRVHNSD 477 (521)
Q Consensus 453 w~~HCHil~H~d~GMm~~~~V~~~~ 477 (521)
|.||||...|...||+..+.|.+++
T Consensus 122 ~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 122 YLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEEeeCcHHHHhCCCeEEEEEEecC
Confidence 9999999999999999999998764
No 34
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.93 E-value=2.1e-08 Score=106.22 Aligned_cols=217 Identities=12% Similarity=0.071 Sum_probs=136.6
Q ss_pred EEEecCCEEEEEEEECC-CCCeeEEecCcCCCCCCCCCCCc----cc-CcccCCCCceEEEEEEcceeeeEEEecCchhh
Q 009960 7 INSTTNDFVHVNVFNNL-DEPLLFTWNGIQQRLNSWQDGVS----GT-NCPILPRKNWTYVFQVKDQIGSFFYFPSINFQ 80 (521)
Q Consensus 7 i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q 80 (521)
+.+.++..+++|+.|.. .....+++.|..... ...||.+ .+ +..+.|||+++...+.+ ..|++-+.|.. .+
T Consensus 201 ~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~~~-~~~~~~l~~~~-~~ 277 (451)
T COG2132 201 FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVDMN-DGGAVTLTALG-ED 277 (451)
T ss_pred eeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEEcC-CCCeEEEEecc-cc
Confidence 45556667999999998 666777777666543 4578875 34 67899999999998864 37888888876 22
Q ss_pred hcCCceecEEEeCCCCCCCCCCCCCcceeEEeeee-ccCCHHHHHHHh-ccCC-------CCCCCCCCeEEEcCcCCCCC
Q 009960 81 KAGGGFGPIRVNNRIVISVPFPKPEAEFDLLIGDW-FYDDYKKTRSMA-NTSL-------TAYNAIPDVILMNGKGPFGY 151 (521)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~-~~~~~~~~~~~~-~~~~-------~~~~~~~~~~liNG~~~~~~ 151 (521)
..+-+.+..-..... ..++...+........|- ............ +.+. .........|.+||+.+..
T Consensus 278 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~- 354 (451)
T COG2132 278 MPDTLKGFRAPNPIL--TPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIGGIGGYVWAINGKAFDD- 354 (451)
T ss_pred CCceeeeeecccccc--ccccccccccccCCCcchhhccccccchhhcCCCcccccccchhhcccccccccccCccCCC-
Confidence 222222222111100 001101111111111110 000000000000 0000 0011123468899998842
Q ss_pred CCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcc---cceeeeeEEecCCcEEEEEEEeCCCCcc
Q 009960 152 QMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYT---NQITLRSLDVHVGQSYSVLVTADQNEAD 228 (521)
Q Consensus 152 ~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~---~p~~~d~v~l~pGeR~dv~v~~~~~~g~ 228 (521)
....+.++.|+++||++.|-+. -.++||+||+.|+|++.| ... .+...|++.+.+++|..+.++++ .+|.
T Consensus 355 ----~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~v~~~a~-~~g~ 427 (451)
T COG2132 355 ----NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLLVRFDAD-YPGP 427 (451)
T ss_pred ----CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEEEEEeCC-CCCc
Confidence 2367889999999999999998 556999999999999999 332 35678999999999999999998 6789
Q ss_pred eEEEeccc
Q 009960 229 YYIVASPK 236 (521)
Q Consensus 229 ~~i~~~~~ 236 (521)
|.++++..
T Consensus 428 ~~~HCH~l 435 (451)
T COG2132 428 WMFHCHIL 435 (451)
T ss_pred eEEeccch
Confidence 99998864
No 35
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.89 E-value=2.3e-09 Score=94.57 Aligned_cols=88 Identities=20% Similarity=0.273 Sum_probs=72.7
Q ss_pred CCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCc--------------cc--CcccCCCCceEEEEEEcce
Q 009960 4 GPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVS--------------GT--NCPILPRKNWTYVFQVKDQ 67 (521)
Q Consensus 4 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~--------------~~--q~~i~pG~~~~y~f~~~~~ 67 (521)
.+.++++.|+.|++.+.|....++.+|+||....... .++.. +. ...|.||++.+.+|++ +.
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~-~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLG-RGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DN 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEE-ETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TS
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeee-cCCcccccccccccccccCcccccccccceeEEEEEEEe-ec
Confidence 5789999999999999999999999999999764322 22222 11 3358999999999997 68
Q ss_pred eeeEEEecCchhhhcCCceecEEEeC
Q 009960 68 IGSFFYFPSINFQKAGGGFGPIRVNN 93 (521)
Q Consensus 68 ~Gt~wYH~H~~~q~~~Gl~G~liV~~ 93 (521)
+|.|.||||...+...||.+.+.|.+
T Consensus 111 ~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 111 PGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999986
No 36
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.87 E-value=1.4e-07 Score=101.57 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=139.2
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEE-EEecCCcccceeeeeEEecCCcEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVL-VETEGSYTNQITLRSLDVHVGQSYS 217 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~l~pGeR~d 217 (521)
..++|||+... |.|+++.|+++++++.|-....+ .+|.||..+.- -..||.+. ..-.|.||+++.
T Consensus 49 ~vi~vNGq~PG--------PtI~~~~GD~v~V~V~N~L~~~t-tIHWHGl~q~~t~w~DGv~~-----TQcPI~PG~sft 114 (596)
T PLN00044 49 EAIGINGQFPG--------PALNVTTNWNLVVNVRNALDEPL-LLTWHGVQQRKSAWQDGVGG-----TNCAIPAGWNWT 114 (596)
T ss_pred EEEEEcCcCCC--------CcEEEECCCEEEEEEEeCCCCCc-cEEECCccCCCCccccCCCC-----CcCCcCCCCcEE
Confidence 47999999774 99999999999999999976543 77777765433 24799642 235899999999
Q ss_pred EEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCC-CCCCCcccccccccccccccccCCCCCC
Q 009960 218 VLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIG-PDPFDLDFSMNQAKSVRWNLTAGAARPN 296 (521)
Q Consensus 218 v~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~~~~~~l~~~~~~p~ 296 (521)
..+++++.+|+||.+++..... .....+-|...+... .+.|.. +...+.... +.......
T Consensus 115 Y~F~~~dq~GT~WYHsH~~~Q~-----~~Gl~GalII~~~~~---~~~P~~~~~~~e~~i~----------l~DW~~~~- 175 (596)
T PLN00044 115 YQFQVKDQVGSFFYAPSTALHR-----AAGGYGAITINNRDV---IPIPFGFPDGGDITLF----------IADWYARD- 175 (596)
T ss_pred EEEEeCCCCceeEeeccchhhh-----hCcCeeEEEEcCccc---ccccccCCcccceEEE----------ecccccCC-
Confidence 9999976799999999753211 111223232223211 011110 100011000 00000000
Q ss_pred CCccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEe
Q 009960 297 PQGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVT 376 (521)
Q Consensus 297 p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 376 (521)
.. ...+.+.... .........|||+.-....... .+ ......++.
T Consensus 176 -~~-------~~~~~l~~g~---~~~~~d~~lING~g~~~~n~~~-----------------~~-------~~~~~~~i~ 220 (596)
T PLN00044 176 -HR-------ALRRALDAGD---LLGAPDGVLINAFGPYQYNDSL-----------------VP-------PGITYERIN 220 (596)
T ss_pred -HH-------HHHHHHhcCC---CCCCCCceEEcccCccccCCcc-----------------cc-------CCCccceEE
Confidence 00 0000000000 0000112456664211000000 00 001123678
Q ss_pred cCCCcEEEEEEEcCC-CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCC-e--e
Q 009960 377 GNHKGWIELVFNNNL-DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNP-G--M 452 (521)
Q Consensus 377 ~~~g~~v~~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnp-G--~ 452 (521)
++.|++++|+|.|.+ ...--|+|-||+|.||+.++.. ..|...|++.|.+|+...+.++++.+ | -
T Consensus 221 V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~-----------v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y 289 (596)
T PLN00044 221 VDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSY-----------TSQQNYTNLDIHVGQSYSFLLTMDQNASTDY 289 (596)
T ss_pred ECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcc-----------cCceeeeeEEEcCCceEEEEEECCCCCCCce
Confidence 999999999999988 6678899999999999997532 24667899999999999999999875 5 3
Q ss_pred eE
Q 009960 453 WN 454 (521)
Q Consensus 453 w~ 454 (521)
|+
T Consensus 290 ~i 291 (596)
T PLN00044 290 YV 291 (596)
T ss_pred EE
Confidence 65
No 37
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.85 E-value=2.3e-07 Score=99.94 Aligned_cols=242 Identities=11% Similarity=0.072 Sum_probs=142.6
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEE-EEecCCcccceeeeeEEecCCcEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVL-VETEGSYTNQITLRSLDVHVGQSYS 217 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~l~pGeR~d 217 (521)
..++|||+... |.|+++.|+++++++.|.-......+|.||..+.- -..||.+.. ..-.|.||+.+.
T Consensus 28 ~~~~~NG~~PG--------P~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG~sf~ 95 (538)
T TIGR03390 28 YSVVVNGTSPG--------PEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPGHFFD 95 (538)
T ss_pred EEEEECCcCCC--------CeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCCCcEE
Confidence 47999999764 99999999999999999865344467777765322 237997631 112578999999
Q ss_pred EEEEeC-CCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCC
Q 009960 218 VLVTAD-QNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPN 296 (521)
Q Consensus 218 v~v~~~-~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~ 296 (521)
..++++ ..+|.||.+.+... +.. . ..+.|...+... .+.. .+.+ ....+......+
T Consensus 96 Y~f~~~~~q~GT~WYHsH~~~--Q~~--~--l~G~lIV~~~~~---~~~~-----~d~e--------~~l~l~Dw~~~~- 152 (538)
T TIGR03390 96 YEIKPEPGDAGSYFYHSHVGF--QAV--T--AFGPLIVEDCEP---PPYK-----YDDE--------RILLVSDFFSAT- 152 (538)
T ss_pred EEEEecCCCCeeeEEecCCch--hhh--c--ceeEEEEccCCc---cCCC-----ccCc--------EEEEEeCCCCCC-
Confidence 999875 36899999998532 211 1 334343333211 0110 0100 000011000000
Q ss_pred CCccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccceeEEe
Q 009960 297 PQGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGVSVVT 376 (521)
Q Consensus 297 p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 376 (521)
... ....+ +..............|||+......... . .. ...| ....+.
T Consensus 153 -~~~-------~~~~~-~~~~~~~~~~~d~~liNG~~~~~~~~~~--------~----~~---------~~~~-~~~~~~ 201 (538)
T TIGR03390 153 -DEE-------IEQGL-LSTPFTWSGETEAVLLNGKSGNKSFYAQ--------I----NP---------SGSC-MLPVID 201 (538)
T ss_pred -HHH-------HHhhh-hccCCccCCCCceEEECCcccccccccc--------c----cC---------CCCC-cceEEE
Confidence 000 00000 0000000011234678887432110000 0 00 0011 134678
Q ss_pred cCCCcEEEEEEEcCCC-CccceeecCcc-eEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCC----
Q 009960 377 GNHKGWIELVFNNNLD-VIDSWHLDGFG-FHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNP---- 450 (521)
Q Consensus 377 ~~~g~~v~~vi~N~~~-~~HP~HlHG~~-F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnp---- 450 (521)
++.|++++|+|.|.+. ...-|+|.||+ |+||+.++. + ..|...|++.|.+|+...|.++++.+
T Consensus 202 v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~-~----------~~P~~v~~l~l~~GqRydVlv~~~~~~~~~ 270 (538)
T TIGR03390 202 VEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGS-Y----------TKPAKIDHLQLGGGQRYSVLFKAKTEDELC 270 (538)
T ss_pred ECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCC-C----------CCceEeCeEEEccCCEEEEEEECCCccccc
Confidence 9999999999999984 55899999999 999999765 2 34667899999999999999999864
Q ss_pred ----eeeEEee
Q 009960 451 ----GMWNLRS 457 (521)
Q Consensus 451 ----G~w~~HC 457 (521)
|.|.+.-
T Consensus 271 ~~~~~~Y~ir~ 281 (538)
T TIGR03390 271 GGDKRQYFIQF 281 (538)
T ss_pred cCCCCcEEEEE
Confidence 6765553
No 38
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=98.74 E-value=2.6e-08 Score=85.21 Aligned_cols=63 Identities=19% Similarity=0.114 Sum_probs=51.1
Q ss_pred CCCCeEEEecCCEEEEEEEECCCCCe--eEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchh
Q 009960 2 FPGPLINSTTNDFVHVNVFNNLDEPL--LFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINF 79 (521)
Q Consensus 2 ~PGP~i~v~~Gd~v~v~~~N~l~~~~--~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 79 (521)
|..+.|+|++||+|+++++|..+.++ +++++|+ +..|+||++.+|+|++ +++|+|||||-.+.
T Consensus 58 ~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi--------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP 122 (135)
T TIGR03096 58 NEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI--------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHP 122 (135)
T ss_pred EcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc--------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCC
Confidence 56789999999999999999876544 4444432 2558999999999995 88999999998764
No 39
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.70 E-value=5.2e-08 Score=82.97 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=68.5
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-Ce
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN-PG 451 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn-pG 451 (521)
++++++.|+.|++.+.|.....+.+|+||... ....+....+ .. -.-.|.||+..+.+|+++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~-----~~~~~~DG~~--~~-------~~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQ-----PPSPWMDGVP--GV-------TQCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBS-----TTGGGGSGGT--TT-------SGSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeee-----eeeeecCCcc--cc-------cceeEEeecceeeeEeeecccc
Confidence 46788999999999999999999999999654 1111111000 00 0124788999999999988 99
Q ss_pred eeEEeecchhhhhccceEEEEEeCC
Q 009960 452 MWNLRSQLLQNWFLGQELYIRVHNS 476 (521)
Q Consensus 452 ~w~~HCHil~H~d~GMm~~~~V~~~ 476 (521)
.|.||||...+...||...+.|++.
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999988878999999988764
No 40
>PLN02191 L-ascorbate oxidase
Probab=98.68 E-value=1.3e-06 Score=94.61 Aligned_cols=253 Identities=13% Similarity=0.078 Sum_probs=140.3
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEE-EEecCCcccceeeeeEEecCCcEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVL-VETEGSYTNQITLRSLDVHVGQSYS 217 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~l~pGeR~d 217 (521)
..++|||+... |.|+++.|+++++++.|........+|.||....- -..||.+-- ..-.|.||+++.
T Consensus 43 ~v~~vNg~~pG--------P~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gv----tq~pI~PG~s~~ 110 (574)
T PLN02191 43 AVMTVNGQFPG--------PTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGV----TQCAINPGETFT 110 (574)
T ss_pred eEEEECCcCCC--------CeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcc----ccCCcCCCCeEE
Confidence 58999999764 99999999999999999865444577777765321 125776521 124689999999
Q ss_pred EEEEeCCCCcceEEEeccccccCCCCCCceeEEEEEeCCCCCCCCCCCCCCCCCCCcccccccccccccccccCCCCCCC
Q 009960 218 VLVTADQNEADYYIVASPKLISTNDSSNLVGLGVLHYSNSKSQVTGPLPIGPDPFDLDFSMNQAKSVRWNLTAGAARPNP 297 (521)
Q Consensus 218 v~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~p 297 (521)
..++++ .+|.||.+.+..... .....+.|.......+. . +. ....+... .+........+
T Consensus 111 Y~f~~~-~~GT~wYHsH~~~q~-----~~Gl~G~liV~~~~~~~-~--~~-~~d~e~~l----------~l~Dw~~~~~~ 170 (574)
T PLN02191 111 YKFTVE-KPGTHFYHGHYGMQR-----SAGLYGSLIVDVAKGPK-E--RL-RYDGEFNL----------LLSDWWHESIP 170 (574)
T ss_pred EEEECC-CCeEEEEeeCcHHHH-----hCCCEEEEEEccCCCCC-C--CC-CCCeeEEE----------eeeccccCChH
Confidence 999997 699999999853111 11223333333221110 0 11 00011100 00000000000
Q ss_pred CccccccccCcceEEEEeccc-cccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCcccce-eEE
Q 009960 298 QGTFNVSNVTLSQTFILQGSK-AEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATRGV-SVV 375 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~-~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~ 375 (521)
.. ...+.... ..........|||+.-....... . ..+....+ .+....++ .+. .++
T Consensus 171 ~~-----------~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~----~---~~~~~~~~-~~~~~~n~---~~~p~~~ 228 (574)
T PLN02191 171 SQ-----------ELGLSSKPMRWIGEAQSILINGRGQFNCSLAA----Q---FSNGTELP-MCTFKEGD---QCAPQTL 228 (574)
T ss_pred HH-----------HHhhccCCCCcCCCCCceEECCCCCCCCcccc----c---ccCCcccc-cceeccCC---CCCceEE
Confidence 00 00000000 00011123566765321110000 0 00000000 00000000 112 258
Q ss_pred ecCCCcEEEEEEEcCC-CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-Ce-e
Q 009960 376 TGNHKGWIELVFNNNL-DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN-PG-M 452 (521)
Q Consensus 376 ~~~~g~~v~~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn-pG-~ 452 (521)
+++.|++++|+|.|.+ ...+-|++.||+|.||+.++... .|...|++.|.+|+...|.++++. +| .
T Consensus 229 ~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v-----------~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 229 RVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYI-----------TPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred EEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeec-----------cceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 8999999999999987 67799999999999999976432 356789999999999999999986 44 4
Q ss_pred eEEe
Q 009960 453 WNLR 456 (521)
Q Consensus 453 w~~H 456 (521)
|-++
T Consensus 298 y~ir 301 (574)
T PLN02191 298 YYIS 301 (574)
T ss_pred EEEE
Confidence 4444
No 41
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=7.9e-06 Score=87.26 Aligned_cols=227 Identities=18% Similarity=0.201 Sum_probs=140.5
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCcee-EEEEecCCcccceeeeeEEecCCcEEE
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKM-VLVETEGSYTNQITLRSLDVHVGQSYS 217 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~-~via~DG~~~~p~~~d~v~l~pGeR~d 217 (521)
..++|||+... |.|.++.|+++.++++|-.. ..+.+|.||-.. .--..||.++. .=.|.|||.|-
T Consensus 48 ~vi~iNG~fPG--------P~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~T-----qCPI~Pg~~~t 113 (563)
T KOG1263|consen 48 QVITINGQFPG--------PTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYIT-----QCPIQPGENFT 113 (563)
T ss_pred eeEeecCCCCC--------CeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCccc-----cCCcCCCCeEE
Confidence 47999999774 99999999999999999854 555667676532 23345995442 22578999999
Q ss_pred EEEEeCCCCcceEEEeccccccCCCCCCceeEE-EEEeCCCCCCCCCCCCCCCCCCCc-----ccccc-ccccccccccc
Q 009960 218 VLVTADQNEADYYIVASPKLISTNDSSNLVGLG-VLHYSNSKSQVTGPLPIGPDPFDL-----DFSMN-QAKSVRWNLTA 290 (521)
Q Consensus 218 v~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~a-il~y~~~~~~~~~~~p~~p~~~~~-----~~~~~-~~~~~~~~l~~ 290 (521)
..+++++..|+||..++..+... ....+ ++.+.....+ -+.+. |+ .+. +|-.+ ..+.++..+..
T Consensus 114 Y~F~v~~q~GT~~yh~h~~~~Ra-----~G~~G~liI~~~~~~p--~pf~~-pd-~E~~ill~dW~~~~~~~~l~~~~~~ 184 (563)
T KOG1263|consen 114 YRFTVKDQIGTLWYHSHVSWQRA-----TGVFGALIINPRPGLP--VPFPK-PD-KEFTILLGDWYKNLNHKNLKNFLDR 184 (563)
T ss_pred EEEEeCCcceeEEEeeccccccc-----cCceeEEEEcCCccCC--CCCCC-CC-ceeEEEeEeeccccCHHHHHHhhcc
Confidence 99999988999999998653321 11233 3333322111 11110 11 111 11110 00111100000
Q ss_pred CCCCCCCCccccccccCcceEEEEeccccccCCceEEEEccEEeecCCCchhhhhhhccCCccccCCCCCCCCCCCCccc
Q 009960 291 GAARPNPQGTFNVSNVTLSQTFILQGSKAEISGWPRYVINNVSYLTLETPLKLADYFVNGSGVYQLDWFPTNSVNDEATR 370 (521)
Q Consensus 291 ~~~~p~p~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 370 (521)
....| .......|||+... ...
T Consensus 185 ~~~~p--------------------------~~~D~~~iNg~~g~--------------------------------~~~ 206 (563)
T KOG1263|consen 185 TGALP--------------------------NPSDGVLINGRSGF--------------------------------LYN 206 (563)
T ss_pred CCCCC--------------------------CCCCceEECCCCCc--------------------------------ccC
Confidence 00000 00123567776410 112
Q ss_pred ceeEEecCCCcEEEEEEEcCC--CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEec
Q 009960 371 GVSVVTGNHKGWIELVFNNNL--DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLD 448 (521)
Q Consensus 371 ~~~~~~~~~g~~v~~vi~N~~--~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~ad 448 (521)
|...+++..|++..|+|.|.+ ...+ |.+-||.+.||..++-. ..|..-|++.|-+|+...+..++|
T Consensus 207 ~~~~l~v~pGktY~lRiiN~g~~~~l~-F~I~~H~ltvVe~Dg~y-----------~~p~~~~~l~i~~GQ~~~vLvtad 274 (563)
T KOG1263|consen 207 CTPTLTVEPGKTYRLRIINAGLNTSLN-FSIANHQLTVVEVDGAY-----------TKPFTTDSLDIHPGQTYSVLLTAD 274 (563)
T ss_pred ceeEEEEcCCCEEEEEEEccccccceE-EEECCeEEEEEEecceE-----------EeeeeeceEEEcCCcEEEEEEeCC
Confidence 466788999999999999988 4445 99999999999986531 124457999999999999999998
Q ss_pred C-Cee-eEEeec
Q 009960 449 N-PGM-WNLRSQ 458 (521)
Q Consensus 449 n-pG~-w~~HCH 458 (521)
. ++. |+-=|=
T Consensus 275 q~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 275 QSPGDYYIAASP 286 (563)
T ss_pred CCCCcEEEEEEe
Confidence 6 453 554444
No 42
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.34 E-value=2.2e-06 Score=70.80 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=56.8
Q ss_pred CCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCC-CCCCCcc-cCcccCCCCceEEEEEEcceeeeEEEecCchhhh
Q 009960 4 GPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNS-WQDGVSG-TNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQK 81 (521)
Q Consensus 4 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~-~~DG~~~-~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~ 81 (521)
-..|+|++||+| +++|....++++.++........ ...+... ....+.||+++++.|.. +|+|+|+|- .+.
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H~ 88 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PHR 88 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--Ccc
Confidence 467999999986 56688777788877643211000 0000000 02346899999999873 999999998 678
Q ss_pred cCCceecEEEe
Q 009960 82 AGGGFGPIRVN 92 (521)
Q Consensus 82 ~~Gl~G~liV~ 92 (521)
..||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 88999999985
No 43
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.22 E-value=5.2e-06 Score=74.98 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=77.0
Q ss_pred eeEEecCCCcEEEEEEEcCC-CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-
Q 009960 372 VSVVTGNHKGWIELVFNNNL-DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDN- 449 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adn- 449 (521)
...+.++.|++++|.|.|.+ ...+.|++.||+|+||+.++... .|...|++.|.+|+.+.|.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v-----------~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPV-----------EPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEE-----------EEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccc-----------cccccceEEeeCCeEEEEEEEeCCC
Confidence 45688999999999999988 45799999999999999976532 256789999999999999999987
Q ss_pred CeeeEEee----cchhhhhccceEEEEEe
Q 009960 450 PGMWNLRS----QLLQNWFLGQELYIRVH 474 (521)
Q Consensus 450 pG~w~~HC----Hil~H~d~GMm~~~~V~ 474 (521)
+|.|.++| +...+...++...+.+-
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999 55677888888877653
No 44
>PRK02710 plastocyanin; Provisional
Probab=98.11 E-value=1.5e-05 Score=68.09 Aligned_cols=74 Identities=22% Similarity=0.387 Sum_probs=55.6
Q ss_pred CCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhhhcC
Q 009960 4 GPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQKAG 83 (521)
Q Consensus 4 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 83 (521)
-+.|++++||+| +++|....++++.+.|... .... ...+.||++++|.|.. +|+|-|+|- .+...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~--~~~~------~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAKE--LSHK------DLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCcc--cccc------ccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 378999999985 5678877788887765311 0011 2347899999999973 899999997 56668
Q ss_pred CceecEEEe
Q 009960 84 GGFGPIRVN 92 (521)
Q Consensus 84 Gl~G~liV~ 92 (521)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.07 E-value=7.9e-06 Score=67.49 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=54.5
Q ss_pred CCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCC------cc-cCcccCCCCceEEEEEEcceeeeEEEecC
Q 009960 4 GPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGV------SG-TNCPILPRKNWTYVFQVKDQIGSFFYFPS 76 (521)
Q Consensus 4 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~------~~-~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H 76 (521)
-+.|++++||+| ++.|....++++.+=-- ....|. +. ....+.||++++++|+ .+|+|.|+|-
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~ 85 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVAD-----GMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT 85 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETT-----SSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEecc-----cccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC
Confidence 378999999985 56676666777766221 000111 00 0124789999999998 5999999998
Q ss_pred chhhhcCCceecEEEe
Q 009960 77 INFQKAGGGFGPIRVN 92 (521)
Q Consensus 77 ~~~q~~~Gl~G~liV~ 92 (521)
- +...||.|.|+|+
T Consensus 86 -P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 86 -P-HYEAGMVGTIIVE 99 (99)
T ss_dssp -T-TGGTTSEEEEEEE
T ss_pred -C-CcccCCEEEEEEC
Confidence 3 8888999999995
No 46
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.03 E-value=1.2e-05 Score=66.99 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=46.6
Q ss_pred CeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhhhcCC
Q 009960 5 PLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQKAGG 84 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~G 84 (521)
.+|++++|+.|+|+++|.....+.+...++.. ...|.||++.+++|+ +.++|+|=|+|-.+. .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~-~~~~G~y~~~C~~~~---~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFT-PLKPGEYEFYCTMHP---N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEE-E-S-EEEEEB-SSS----T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEc-CCCCEEEEEEcCCCC---c-
Confidence 48999999999999999988877777666422 256899999999998 578999999999766 2
Q ss_pred ceecEEE
Q 009960 85 GFGPIRV 91 (521)
Q Consensus 85 l~G~liV 91 (521)
|.|.|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 7787775
No 47
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.97 E-value=3.9e-05 Score=61.12 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=52.8
Q ss_pred CCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhhhcC
Q 009960 4 GPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQKAG 83 (521)
Q Consensus 4 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 83 (521)
-+.|++++||+|. ++|....++++++...... ..+-. ...+.||++|++.|+ ++|+|-|||-.+.
T Consensus 10 P~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~~~---~~~~~---~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTVT--WINREAMPHNVHFVAGVLG---EAALK---GPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEEE--EEECCCCCccEEecCCCCc---ccccc---ccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 4789999999975 6788778888887643110 01100 123578888888775 5999999998765
Q ss_pred CceecEEEe
Q 009960 84 GGFGPIRVN 92 (521)
Q Consensus 84 Gl~G~liV~ 92 (521)
+|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 399999985
No 48
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.89 E-value=8.8e-05 Score=65.74 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=58.4
Q ss_pred eEEecCCCcEEEEEEEcCCC-CccceeecCcceEEEeeccccCC--CCCCCCCCCCCCCcceEEEeCC---C--CEEEEE
Q 009960 373 SVVTGNHKGWIELVFNNNLD-VIDSWHLDGFGFHVVGFGIGEWA--PESRSTYNLFDPVVRSTVQVYP---G--GWTAVY 444 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~--~~~~~~~n~~~p~~rDTv~vp~---~--g~v~ir 444 (521)
+.+.++.|+.|++++.|.+. ..|.|-||.+.- ++. +... . .|..-..-.+|+ | ++..++
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~--------~~~~~p~md-G----~~~~~~~~i~p~~~~g~~~~~~~t 118 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGP--------PYPYMPGMD-G----LGFVAGTGFLPPPKSGKFGYTDFT 118 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCC--------ccccccccC-C----CCccccCcccCCCCCCccceeEEE
Confidence 35788999999999999874 667666663221 110 0000 0 011111112222 2 246889
Q ss_pred EEecCCeeeEEeecchhhhhccceEEEEEe
Q 009960 445 AFLDNPGMWNLRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 445 f~adnpG~w~~HCHil~H~d~GMm~~~~V~ 474 (521)
|+|+.+|.+.||||+..|...||-..+.|+
T Consensus 119 f~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 119 YHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 999999999999999999999999998773
No 49
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.63 E-value=0.00015 Score=77.49 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=56.2
Q ss_pred CeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCch-hhhcC
Q 009960 5 PLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSIN-FQKAG 83 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~~ 83 (521)
+.|+|++||.|.++++|.-...-.+ ||...... ++..-+.||++.+..|++ +++|+|||||..- ...-.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~-------nI~~dv~PG~t~svtF~a-dkPGvy~~~CtefCGa~H~ 624 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY-------GVNMEVAPQATASVTFTA-DKPGVYWYYCTWFCHALHM 624 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccc--cceeeccc-------CccEEEcCCceEEEEEEc-CCCEEEEEECCcccccCcc
Confidence 5699999999999999953211111 55533211 112447799999999995 8899999999952 11223
Q ss_pred CceecEEEeCC
Q 009960 84 GGFGPIRVNNR 94 (521)
Q Consensus 84 Gl~G~liV~~~ 94 (521)
+|.|.|+|+++
T Consensus 625 ~M~G~~iVep~ 635 (635)
T PRK02888 625 EMRGRMLVEPK 635 (635)
T ss_pred cceEEEEEEeC
Confidence 79999999873
No 50
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.54 E-value=0.00035 Score=57.62 Aligned_cols=82 Identities=17% Similarity=0.043 Sum_probs=58.3
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.+.++.|++|+|+ |.+...|-+.++...+..-.. .+ ......+++.+.||+...+.|.. ||.|
T Consensus 18 ~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~pG~t~~~tF~~--~G~y 80 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVK---EL----------AKSLSHKDLLNSPGESYEVTFST--PGTY 80 (99)
T ss_pred EEEECCCCEEEEE--ECCCCCceEEECCCCCccchh---hh----------cccccccccccCCCCEEEEEeCC--CEEE
Confidence 4688999998885 777788888876432211100 00 00123467888999998887765 9999
Q ss_pred EEeecchhhhhccceEEEEEe
Q 009960 454 NLRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 454 ~~HCHil~H~d~GMm~~~~V~ 474 (521)
.|+|- .|...||...+.|.
T Consensus 81 ~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 81 TFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEcC--CccccCCEEEEEEC
Confidence 99998 59999999999873
No 51
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.53 E-value=0.00056 Score=57.80 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=51.3
Q ss_pred CCeEEEecCCEEEEEEEECCCCCeeEEe-cCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhhhc
Q 009960 4 GPLINSTTNDFVHVNVFNNLDEPLLFTW-NGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQKA 82 (521)
Q Consensus 4 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~-HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~ 82 (521)
...|+|++||+|+....|. ++++.+ .+. ..+|... ..-.+|++++++|. .+|+|=|+|- .+..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 4689999999987776664 455554 221 1122211 11245777777774 5999999998 5788
Q ss_pred CCceecEEEeCC
Q 009960 83 GGGFGPIRVNNR 94 (521)
Q Consensus 83 ~Gl~G~liV~~~ 94 (521)
.||.|.++|.++
T Consensus 78 ~GM~G~V~Vg~~ 89 (116)
T TIGR02375 78 MGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEECCC
Confidence 999999999874
No 52
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.48 E-value=0.00062 Score=58.13 Aligned_cols=75 Identities=19% Similarity=0.167 Sum_probs=55.3
Q ss_pred CeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhhhcCC
Q 009960 5 PLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQKAGG 84 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~G 84 (521)
-+|+|++||+ |+++|.....++++.-+.. . .+|.- .....+|++|++.|. .+|+|-|.|-. +..+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~--~~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---D--PEGSG--TLKAGINESFTHTFE---TPGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---C--ccccc--ccccCCCcceEEEec---ccceEEEEecc--CCCCC
Confidence 4789999999 6788888778888876542 1 12221 233455688888886 39999999976 56789
Q ss_pred ceecEEEeC
Q 009960 85 GFGPIRVNN 93 (521)
Q Consensus 85 l~G~liV~~ 93 (521)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 53
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.39 E-value=0.00075 Score=58.10 Aligned_cols=59 Identities=14% Similarity=0.273 Sum_probs=49.8
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.+.++.|+.|+|++.|.+..+|.+-++++. -...++||+..+|+|.++.||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---------------------------is~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYG---------------------------ISEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCC---------------------------cceEECCCCeEEEEEECCCCEEE
Confidence 467999999999999999888877776541 13457889999999999999999
Q ss_pred EEeecc
Q 009960 454 NLRSQL 459 (521)
Q Consensus 454 ~~HCHi 459 (521)
.|||-+
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999987
No 54
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.22 E-value=0.0026 Score=56.77 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=64.0
Q ss_pred CeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCC-------CCCCCC----cccC------cccCCCCceEEEEEEcce
Q 009960 5 PLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLN-------SWQDGV----SGTN------CPILPRKNWTYVFQVKDQ 67 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~-------~~~DG~----~~~q------~~i~pG~~~~y~f~~~~~ 67 (521)
++|.+-.|-+|.|+|.|.-.-++++-. + +..+ ...||. +|.. ..|.+|++..=.|. +-+
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHnl~i--v-~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~-~~~ 160 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHNLKL--L-PNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN-DTS 160 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCccEEE--e-cCCCCCCCccccccCceeEeecccccCccccccccccceeEEEec-cCC
Confidence 799999999999999999766666554 1 1111 235665 2222 23567888555555 578
Q ss_pred eeeEEEecCchhhhcCCceecEEEeCC
Q 009960 68 IGSFFYFPSINFQKAGGGFGPIRVNNR 94 (521)
Q Consensus 68 ~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 94 (521)
+|+|||-|-.-.|..+||+|-+||...
T Consensus 161 ~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 161 AGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred CeeEEEEcccCChhhcCcEEEEEEecC
Confidence 999999999999999999999999874
No 55
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.15 E-value=0.0021 Score=58.60 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=64.9
Q ss_pred CCeEEEecCCEEEEEEEECCCCCeeEEe--cCcC--CCCCCCCCCC----ccc------CcccCCCCceEEEEEEcceee
Q 009960 4 GPLINSTTNDFVHVNVFNNLDEPLLFTW--NGIQ--QRLNSWQDGV----SGT------NCPILPRKNWTYVFQVKDQIG 69 (521)
Q Consensus 4 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~--HG~~--~~~~~~~DG~----~~~------q~~i~pG~~~~y~f~~~~~~G 69 (521)
-++|.+-.|-+|.|+|+|...-++++=. -+.. .......||. +|. ...|.+|++..-.|. +-++|
T Consensus 85 ~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~-~l~aG 163 (196)
T PF06525_consen 85 QMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYN-DLPAG 163 (196)
T ss_pred cEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEc-cCCCc
Confidence 3789999999999999998655544322 1111 0112335553 121 235889999987775 35799
Q ss_pred eEEEecCchhhhcCCceecEEEeCC
Q 009960 70 SFFYFPSINFQKAGGGFGPIRVNNR 94 (521)
Q Consensus 70 t~wYH~H~~~q~~~Gl~G~liV~~~ 94 (521)
.|||=|-.-.|...||++-|+|...
T Consensus 164 ~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 164 YYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eEEEEccCCChhhcCCEEEEEEecC
Confidence 9999999999999999999999974
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.98 E-value=0.0042 Score=52.42 Aligned_cols=72 Identities=17% Similarity=0.072 Sum_probs=50.4
Q ss_pred CeEEEecCCEEEEEEEECC-CCCeeEEecCcCCCCCCCCC-CCcccCcccCCCCceEEEEEEcceeeeEEEecCchhhhc
Q 009960 5 PLINSTTNDFVHVNVFNNL-DEPLLFTWNGIQQRLNSWQD-GVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQKA 82 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~D-G~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~ 82 (521)
..|+|++||+|+ ++|+. ..++++..-+ . ...| + .....+|++|+|.|. ++|+|=|+|=. +..
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~-~~f~s~----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~p--H~~ 105 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----D-GDLDES----ERVSEEGTTYEHTFE---EPGIYLYVCVP--HEA 105 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----C-CCcccc----ccccCCCCEEEEEec---CCcEEEEEccC--CCC
Confidence 578999999966 66543 4667665421 0 1112 1 123578999999996 49999999984 466
Q ss_pred CCceecEEEe
Q 009960 83 GGGFGPIRVN 92 (521)
Q Consensus 83 ~Gl~G~liV~ 92 (521)
.||.|.|+|+
T Consensus 106 ~gM~G~I~V~ 115 (115)
T TIGR03102 106 LGMKGAVVVE 115 (115)
T ss_pred CCCEEEEEEC
Confidence 7899999984
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.96 E-value=0.0036 Score=52.04 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=43.8
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.++++.|+.+.++|.|.+...|-|.+-+. +.+ ..+++|+..++.|.++.||.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~~--------------------------~~~-~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPDL--------------------------GIS-KVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGGG--------------------------TEE-EEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECCC--------------------------ceE-EEECCCCEEEEEEcCCCCEEE
Confidence 46889999999999999888776666551 123 778899999999999999999
Q ss_pred EEeecchhhhh
Q 009960 454 NLRSQLLQNWF 464 (521)
Q Consensus 454 ~~HCHil~H~d 464 (521)
-|+|-+ |..
T Consensus 89 ~~~C~~--~~~ 97 (104)
T PF13473_consen 89 EFYCTM--HPN 97 (104)
T ss_dssp EEB-SS--S-T
T ss_pred EEEcCC--CCc
Confidence 999997 554
No 58
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.42 E-value=0.024 Score=46.59 Aligned_cols=82 Identities=16% Similarity=0.055 Sum_probs=54.7
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.+.++.|++|.|+.. +...|.+.+=- +. +..... ... .+..-.+..+.+|....++|. .+|.|
T Consensus 18 ~i~V~~G~tV~~~n~--~~~~Hnv~~~~--------~~--~~~~~~-~~~--~~~~~~~~~~~~G~~~~~tF~--~~G~y 80 (99)
T PF00127_consen 18 EITVKAGDTVTFVNN--DSMPHNVVFVA--------DG--MPAGAD-SDY--VPPGDSSPLLAPGETYSVTFT--KPGTY 80 (99)
T ss_dssp EEEEETTEEEEEEEE--SSSSBEEEEET--------TS--SHTTGG-HCH--HSTTCEEEEBSTTEEEEEEEE--SSEEE
T ss_pred EEEECCCCEEEEEEC--CCCCceEEEec--------cc--cccccc-ccc--cCccccceecCCCCEEEEEeC--CCeEE
Confidence 478899999888554 56777665432 11 100000 000 001116777889998888777 99999
Q ss_pred EEeecchhhhhccceEEEEEe
Q 009960 454 NLRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 454 ~~HCHil~H~d~GMm~~~~V~ 474 (521)
.|+|- - |...||-..+.|+
T Consensus 81 ~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 81 EYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEET-T-TGGTTSEEEEEEE
T ss_pred EEEcC-C-CcccCCEEEEEEC
Confidence 99999 4 9999999999884
No 59
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=96.08 E-value=0.069 Score=45.18 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=42.3
Q ss_pred CCCEEEEEEEecCCeeeEEeecchhhhhccceEEEEEeCCCCCCCCCCCCCCChhcccccccCccchHHHHHHHH
Q 009960 437 PGGWTAVYAFLDNPGMWNLRSQLLQNWFLGQELYIRVHNSDPNPAKERPPPENLLLCGQCKFLHLKLEFLMVLIE 511 (521)
Q Consensus 437 ~~g~v~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~~~~~~~~~ 511 (521)
++.... ++++.+|.+-|+|=. |...||-..+.|.++ |.|+......+-...-.+-|-++|+
T Consensus 54 ~g~~~~--~tF~~~G~Y~Y~C~p--H~~~GM~G~V~Vg~~----------~~n~~~~~~~~~~~~~~~~~~~~~~ 114 (116)
T TIGR02375 54 INEEYT--VTVTEEGVYGVKCTP--HYGMGMVALIQVGDP----------PANLDAAKSAKHPKKAQERLDKLFA 114 (116)
T ss_pred CCCEEE--EEeCCCEEEEEEcCC--CccCCCEEEEEECCC----------CcCHHHHhhccCcHHHHHHHHHHHH
Confidence 455544 555789999999995 999999999999765 3444444444555555666655554
No 60
>PRK02710 plastocyanin; Provisional
Probab=96.02 E-value=0.031 Score=47.68 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=50.8
Q ss_pred EecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeE
Q 009960 375 VTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWN 454 (521)
Q Consensus 375 ~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 454 (521)
+.++.|++|+| .|.+...|.+.+.+. +.+. .+| ..+.+|+...+.|.. ||.|.
T Consensus 49 i~v~~Gd~V~~--~N~~~~~H~v~~~~~---------~~~~-------------~~~-~~~~pg~t~~~tF~~--~G~y~ 101 (119)
T PRK02710 49 LTIKAGDTVKW--VNNKLAPHNAVFDGA---------KELS-------------HKD-LAFAPGESWEETFSE--AGTYT 101 (119)
T ss_pred EEEcCCCEEEE--EECCCCCceEEecCC---------cccc-------------ccc-cccCCCCEEEEEecC--CEEEE
Confidence 67889999887 477778888765421 1110 112 346778887777665 99999
Q ss_pred EeecchhhhhccceEEEEEe
Q 009960 455 LRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 455 ~HCHil~H~d~GMm~~~~V~ 474 (521)
|+|= .|...||-..+.|+
T Consensus 102 y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 102 YYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEcC--CCccCCcEEEEEEC
Confidence 9997 59899999999873
No 61
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.60 E-value=0.048 Score=58.73 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=54.9
Q ss_pred EecCCCcEEEEEEEcCC---CCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 375 VTGNHKGWIELVFNNNL---DVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 375 ~~~~~g~~v~~vi~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
+.++.|+.|.+++.|.+ +..|-|-+-++. --+.+.||....+.|+++.||
T Consensus 557 i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~n---------------------------I~~dv~PG~t~svtF~adkPG 609 (635)
T PRK02888 557 FTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYG---------------------------VNMEVAPQATASVTFTADKPG 609 (635)
T ss_pred EEecCCCEEEEEEEeCCcccccccceeecccC---------------------------ccEEEcCCceEEEEEEcCCCE
Confidence 56789999999999964 566666663321 113566899999999999999
Q ss_pred eeEEeecchhh-hhccceEEEEEeC
Q 009960 452 MWNLRSQLLQN-WFLGQELYIRVHN 475 (521)
Q Consensus 452 ~w~~HCHil~H-~d~GMm~~~~V~~ 475 (521)
.|.+||...-| .|.+|...+.|++
T Consensus 610 vy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 610 VYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEEEECCcccccCcccceEEEEEEe
Confidence 99999987432 3458888887753
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.74 E-value=0.11 Score=45.51 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=66.7
Q ss_pred EecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeE
Q 009960 375 VTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWN 454 (521)
Q Consensus 375 ~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 454 (521)
..++.|++++.++.|....-|=|=+= ++....+. +..... ..-..---..++.|.||.+..|-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~~--~~~~~~--~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLEH--VTHMIL--ADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccchh--HHHhhh--CCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 45788999999999999877766554 22111110 100000 000001235799999999999999999999999
Q ss_pred EeecchhhhhccceEEEEEe
Q 009960 455 LRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 455 ~HCHil~H~d~GMm~~~~V~ 474 (521)
|-|=|-.|-+.||-..+.|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999874
No 63
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=94.05 E-value=0.25 Score=39.05 Aligned_cols=72 Identities=10% Similarity=-0.046 Sum_probs=46.5
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.+.+..|++|.| .|.+...|-.++....+ +..+ ++ ...+.++.... ++++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~~-~~~~~~g~~~~--~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------LK-GPMMKKEQAYS--LTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------cc-ccccCCCCEEE--EECCCCEEE
Confidence 367889999887 67777888888653221 0000 11 11234555554 566789999
Q ss_pred EEeecchhhhhccceEEEEEe
Q 009960 454 NLRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 454 ~~HCHil~H~d~GMm~~~~V~ 474 (521)
.|||=+ |- .|-..+.|+
T Consensus 67 ~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred EEEcCC--CC--CCeEEEEEC
Confidence 999997 55 587777663
No 64
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.85 E-value=0.43 Score=40.27 Aligned_cols=72 Identities=13% Similarity=-0.004 Sum_probs=47.1
Q ss_pred EecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeE
Q 009960 375 VTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWN 454 (521)
Q Consensus 375 ~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 454 (521)
+.++.|++|.|+-+ .+...|-.. +.+.+.|+. ......+|+...+.| +.||.|.
T Consensus 44 ltV~~GdTVtw~~~-~d~~~HnV~---------s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~Y~ 97 (115)
T TIGR03102 44 IRVDPGTTVVWEWT-GEGGGHNVV---------SDGDGDLDE--------------SERVSEEGTTYEHTF--EEPGIYL 97 (115)
T ss_pred EEECCCCEEEEEEC-CCCCCEEEE---------ECCCCCccc--------------cccccCCCCEEEEEe--cCCcEEE
Confidence 67889999998433 334555542 222233321 111234566666666 7899999
Q ss_pred EeecchhhhhccceEEEEEe
Q 009960 455 LRSQLLQNWFLGQELYIRVH 474 (521)
Q Consensus 455 ~HCHil~H~d~GMm~~~~V~ 474 (521)
|+|=. |...||-..+.|+
T Consensus 98 Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 98 YVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEccC--CCCCCCEEEEEEC
Confidence 99996 9999999999873
No 65
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.65 E-value=0.35 Score=41.25 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=49.4
Q ss_pred CCeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCch-hhhc
Q 009960 4 GPLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSIN-FQKA 82 (521)
Q Consensus 4 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~ 82 (521)
.+.|.+..|+.|++.+++. +.-+++...++.. +.-+-||+.-...|++ +++|+|++.|..- +.--
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc------------ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 3689999999999999995 4445555444321 2345789999999996 7899999999841 1111
Q ss_pred CCceecEEE
Q 009960 83 GGGFGPIRV 91 (521)
Q Consensus 83 ~Gl~G~liV 91 (521)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 226666654
No 66
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=92.76 E-value=0.46 Score=40.29 Aligned_cols=85 Identities=15% Similarity=0.040 Sum_probs=53.4
Q ss_pred CeEEEec-CCEEEEEEEECCCCCeeEEecCcCCCC--------------CCCCCCCc----cc---CcccCCCCceEEEE
Q 009960 5 PLINSTT-NDFVHVNVFNNLDEPLLFTWNGIQQRL--------------NSWQDGVS----GT---NCPILPRKNWTYVF 62 (521)
Q Consensus 5 P~i~v~~-Gd~v~v~~~N~l~~~~~iH~HG~~~~~--------------~~~~DG~~----~~---q~~i~pG~~~~y~f 62 (521)
..|.|++ |..|.|+|+|....+-..=-|.+-... ....|=+| -+ ..-|.|||+.+.+|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 4789998 489999999985433222112110000 00111122 11 33489999999999
Q ss_pred EEcc-eeee-EEEecCchhhhcCCceecEE
Q 009960 63 QVKD-QIGS-FFYFPSINFQKAGGGFGPIR 90 (521)
Q Consensus 63 ~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~li 90 (521)
+++. ++|+ |-|-|-.-.+.+ .|.|.|.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 9753 5786 999999877776 4888875
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.62 E-value=2.4 Score=36.12 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=52.9
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.++.|+.|++.+++. +..|-|.+-.... -+.+.||....+.|.++.||
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~---------------------------k~d~~PG~~~~~~~~~~~~G 96 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI---------------------------KMDAIPGRTNSVTFTPDKPG 96 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE---------------------------EEEEBTTCEEEEEEEESSSE
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc---------------------------ccccccccceeeeeeeccCC
Confidence 3457899999999999986 4557776653322 13456789999999999999
Q ss_pred eeEEeecch-hhhhccceEEEEE
Q 009960 452 MWNLRSQLL-QNWFLGQELYIRV 473 (521)
Q Consensus 452 ~w~~HCHil-~H~d~GMm~~~~V 473 (521)
.+-..|..+ ..-|..|...+.|
T Consensus 97 ~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 97 TYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp EEEEEE-SSSSTTGGG-EEEEEE
T ss_pred cEEEcCccccCcCcCCCeEEEEE
Confidence 999999976 3445566666665
No 68
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.93 E-value=0.82 Score=42.83 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=56.6
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCee
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
+.+.++.|+.|++.+++.+-. | .|+|-+.+. ..| +.||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV~-H-------sf~ip~~~~-----------------k~d---a~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDVI-H-------SFWVPELGG-----------------KID---AIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCchh-h-------cccccccCc-----------------eEE---ecCCcEEEEEEEeCCCEE
Confidence 357889999999999986533 4 454433321 234 557899999999999999
Q ss_pred eEEeecchh-hhhccceEEEEEeCCC
Q 009960 453 WNLRSQLLQ-NWFLGQELYIRVHNSD 477 (521)
Q Consensus 453 w~~HCHil~-H~d~GMm~~~~V~~~~ 477 (521)
+...|--.- ..|..|...+.|.+++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHH
Confidence 999998742 3457888888887654
No 69
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=90.69 E-value=0.71 Score=40.56 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=63.7
Q ss_pred CCCCeEEEecCCEEEEEEEECCCC--CeeEE---------ecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeee
Q 009960 2 FPGPLINSTTNDFVHVNVFNNLDE--PLLFT---------WNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGS 70 (521)
Q Consensus 2 ~PGP~i~v~~Gd~v~v~~~N~l~~--~~~iH---------~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt 70 (521)
|++-.+.++.|++++..+.|...- ..++- .|.... +.+.+--.-...+.||++-...|.. .++|.
T Consensus 60 f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~f-t~~g~ 135 (158)
T COG4454 60 FKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVF-TGAGK 135 (158)
T ss_pred cCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEe-cCCcc
Confidence 567788999999999999997521 11111 122221 2333321114569999999999997 56999
Q ss_pred EEEecCchhhhcCCceecEEEeC
Q 009960 71 FFYFPSINFQKAGGGFGPIRVNN 93 (521)
Q Consensus 71 ~wYH~H~~~q~~~Gl~G~liV~~ 93 (521)
|=+-|-.-.++..||.|-|.|.+
T Consensus 136 ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 136 YEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred EEEEecCCCcccCCcEEEEEeCC
Confidence 99999999999999999998864
No 70
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=90.40 E-value=1.6 Score=37.51 Aligned_cols=73 Identities=16% Similarity=-0.045 Sum_probs=48.5
Q ss_pred EecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeeeE
Q 009960 375 VTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMWN 454 (521)
Q Consensus 375 ~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w~ 454 (521)
++++.|++|+| .|.+...|-.+.=+-. . |..-+++....+.+...-|.. ||.|.
T Consensus 56 v~v~pGDTVtw--~~~d~~~Hnv~~~~~~---------~-------------~~g~~~~~~~~~~s~~~Tfe~--~G~Y~ 109 (128)
T COG3794 56 VTVKPGDTVTW--VNTDSVGHNVTAVGGM---------D-------------PEGSGTLKAGINESFTHTFET--PGEYT 109 (128)
T ss_pred EEECCCCEEEE--EECCCCCceEEEeCCC---------C-------------cccccccccCCCcceEEEecc--cceEE
Confidence 67889999998 6766667765433221 1 111233333344555555544 99999
Q ss_pred EeecchhhhhccceEEEEEeC
Q 009960 455 LRSQLLQNWFLGQELYIRVHN 475 (521)
Q Consensus 455 ~HCHil~H~d~GMm~~~~V~~ 475 (521)
|.|=. |.-+||-..+.|.+
T Consensus 110 Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 110 YYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEecc--CCCCCcEEEEEeCC
Confidence 99998 99999999998853
No 71
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=87.96 E-value=2.6 Score=43.20 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=49.4
Q ss_pred CeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCccc--CcccCCCCceEEEEEEcceeeeEEEecCchhhhc
Q 009960 5 PLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGT--NCPILPRKNWTYVFQVKDQIGSFFYFPSINFQKA 82 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~--q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~ 82 (521)
..+.|..|+ +.+.++|....++.+-. .+|+..+ ...|.||.+.++.+++ .+|+|-|+|-. +
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~--~-- 106 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEWEI----------LKGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGL--L-- 106 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceEEe----------eccccccccccccCCCCceEEEEec--CCceEEeecCc--C--
Confidence 467788885 78888888655533211 1222111 3569999999988776 59999999933 2
Q ss_pred CCceecEEEeCCC
Q 009960 83 GGGFGPIRVNNRI 95 (521)
Q Consensus 83 ~Gl~G~liV~~~~ 95 (521)
..+.|.++|.+..
T Consensus 107 ~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 TNPKGKLIVKGEA 119 (375)
T ss_pred CCCCceEEEeCCC
Confidence 3358999998743
No 72
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=86.69 E-value=14 Score=34.13 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=59.1
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCC-----CCCCC-CCCCCCCCcceEEEeCCCCEEEEEEEe
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWA-----PESRS-TYNLFDPVVRSTVQVYPGGWTAVYAFL 447 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~-----~~~~~-~~n~~~p~~rDTv~vp~~g~v~irf~a 447 (521)
.+.++.|-.|.++|.|.+.+.| .|-|+..+..... .+... .+-...+.--..--+.+|.....-|..
T Consensus 87 ~i~VPAGw~V~i~f~N~~~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~ 159 (196)
T PF06525_consen 87 TIYVPAGWNVQITFTNQESLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYND 159 (196)
T ss_pred EEEEcCCCEEEEEEEcCCCCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEcc
Confidence 4678999999999999987766 4556644322110 00000 000000000001123356666666666
Q ss_pred cCCeeeEEeecchhhhhccceEEEEEeC
Q 009960 448 DNPGMWNLRSQLLQNWFLGQELYIRVHN 475 (521)
Q Consensus 448 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 475 (521)
-.||.|.+=|=|..|...||=..+.|-+
T Consensus 160 l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 160 LPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred CCCceEEEEccCCChhhcCCEEEEEEec
Confidence 6799999999999999999999998854
No 73
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=85.79 E-value=3.1 Score=40.20 Aligned_cols=77 Identities=8% Similarity=-0.108 Sum_probs=58.2
Q ss_pred CeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCc-hhhhcC
Q 009960 5 PLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSI-NFQKAG 83 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~q~~~ 83 (521)
..|.+..|.+|+++++-. +.-+++...++.. +.-.-||...+..+++ +++|+|.-.|+. .+..-.
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~------------k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH~ 202 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG------------KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGHS 202 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCc------------eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCcc
Confidence 789999999999999876 4555555555422 2335678888888884 889999999994 355556
Q ss_pred CceecEEEeCCC
Q 009960 84 GGFGPIRVNNRI 95 (521)
Q Consensus 84 Gl~G~liV~~~~ 95 (521)
.|.|.++|.+++
T Consensus 203 ~M~~~v~vvs~~ 214 (247)
T COG1622 203 FMRFKVIVVSQE 214 (247)
T ss_pred cceEEEEEEcHH
Confidence 699999999854
No 74
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=85.09 E-value=1.3 Score=45.48 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=31.6
Q ss_pred cccCCCCceEEEEEEcceeeeEEEecCch-hhhcCCceecEEEeC
Q 009960 50 CPILPRKNWTYVFQVKDQIGSFFYFPSIN-FQKAGGGFGPIRVNN 93 (521)
Q Consensus 50 ~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~~Gl~G~liV~~ 93 (521)
..+.|-++-.|.|.+ +.+|.+||.|--. .-+-+-|.|-++|+.
T Consensus 594 ~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~em~~rmlve~ 637 (637)
T COG4263 594 MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHMEMAGRMLVEA 637 (637)
T ss_pred EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHHhhccceeecC
Confidence 457888999999996 7799999997643 223333788888873
No 75
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=84.42 E-value=8.2 Score=30.40 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=38.1
Q ss_pred EEEEEEEecCccceeeEEEc-Cce--eEEEEecCCcccc--------eeeeeEEecCCcEEEEEEEeCCC---CcceEEE
Q 009960 167 TYRFRISNVGSVFSFNFRIQ-NHK--MVLVETEGSYTNQ--------ITLRSLDVHVGQSYSVLVTADQN---EADYYIV 232 (521)
Q Consensus 167 ~~rlRliNa~~~~~~~~~i~-gh~--~~via~DG~~~~p--------~~~d~v~l~pGeR~dv~v~~~~~---~g~~~i~ 232 (521)
...|++.|.+... +.|... |+. |.|...+|..+-- .......|.|||...+-.+.+.. +|.|.+.
T Consensus 3 ~~~l~v~N~s~~~-v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSDEP-VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCCCe-EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 3578888887653 366654 554 4555557766521 23468899999999999998764 6999886
Q ss_pred e
Q 009960 233 A 233 (521)
Q Consensus 233 ~ 233 (521)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 76
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.07 E-value=3.4 Score=39.87 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=56.4
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.++.|+.|++.++..+ ..| .|+|-+-+ --+.+.||-...+.+.++.||
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D-ViH-------sF~IP~l~--------------------~k~d~iPG~~~~~~~~~~~~G 187 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD-VIH-------SFWIPQLG--------------------GKIDAIPGMTTELWLTANKPG 187 (247)
T ss_pred cceEEEeCCCeEEEEEEech-hce-------eEEecCCC--------------------ceeeecCCceEEEEEecCCCe
Confidence 34578899999999988774 334 45555543 223445678889999999999
Q ss_pred eeEEeecchhh-hhccceEEEEEeCCCC
Q 009960 452 MWNLRSQLLQN-WFLGQELYIRVHNSDP 478 (521)
Q Consensus 452 ~w~~HCHil~H-~d~GMm~~~~V~~~~~ 478 (521)
.|-..|+.+-- -|..|-..+.|+.+++
T Consensus 188 ~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 188 TYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 99999998754 4455556777766654
No 77
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=81.37 E-value=5 Score=37.55 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=52.9
Q ss_pred CeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCc-hhhhcC
Q 009960 5 PLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSI-NFQKAG 83 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~-~~q~~~ 83 (521)
..|.+..|+.|++++++.. .+ ||..... . +++.-+-||..-+..|++ +++|+|...|.. -+.--.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~---~----~~k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h~ 182 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPE---L----GGKIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGHS 182 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hcccccc---c----CceEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCcc
Confidence 4789999999999999852 22 5543311 1 113445689988888985 789999999984 122224
Q ss_pred CceecEEEeCC
Q 009960 84 GGFGPIRVNNR 94 (521)
Q Consensus 84 Gl~G~liV~~~ 94 (521)
.|.+-++|.++
T Consensus 183 ~M~~~v~v~~~ 193 (201)
T TIGR02866 183 LMLFKVVVVER 193 (201)
T ss_pred CCeEEEEEECH
Confidence 58899988864
No 78
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=81.26 E-value=12 Score=31.86 Aligned_cols=78 Identities=18% Similarity=0.331 Sum_probs=50.4
Q ss_pred CceEEEecC-cEEEEEEEecCccce----eeEEEc-CceeEEE-------EecCCcccc----eeeeeEEecCCcEEEEE
Q 009960 157 PESFTVTKG-MTYRFRISNVGSVFS----FNFRIQ-NHKMVLV-------ETEGSYTNQ----ITLRSLDVHVGQSYSVL 219 (521)
Q Consensus 157 ~p~~~v~~G-~~~rlRliNa~~~~~----~~~~i~-gh~~~vi-------a~DG~~~~p----~~~d~v~l~pGeR~dv~ 219 (521)
...|+|.++ +.+.+.|-|.|...- +++-|- .-.++-| +.|-.|+.+ +...+=.|++||..+|-
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 368999984 889999999986432 222221 1112212 234556643 23457789999999999
Q ss_pred EEeCC-CCc-ceEEEec
Q 009960 220 VTADQ-NEA-DYYIVAS 234 (521)
Q Consensus 220 v~~~~-~~g-~~~i~~~ 234 (521)
|+++. .+| +|.+..+
T Consensus 95 F~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EECCCCCCCCcceEEEc
Confidence 99874 356 6988876
No 79
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=79.61 E-value=4 Score=38.90 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=56.2
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.+.++.|+.|++.++..+-. | +|+|-+.+. .+|.+ ||....+.|+++.||.|
T Consensus 140 el~lP~g~pV~~~ltS~DVi-H-------SF~VP~l~~-----------------K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVM-N-------SFFIPQLGS-----------------QIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECchh-h-------hhhhhhcCC-----------------eeecC---CCceEEEEEEeCCCEEE
Confidence 46789999999999877532 3 566655432 45665 68888999999999999
Q ss_pred EEeecchh-hhhccceEEEEEeCCC
Q 009960 454 NLRSQLLQ-NWFLGQELYIRVHNSD 477 (521)
Q Consensus 454 ~~HCHil~-H~d~GMm~~~~V~~~~ 477 (521)
.-.|--.- -.|..|...+.|++++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~ 216 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRA 216 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHH
Confidence 99998653 3356777777777654
No 80
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=77.27 E-value=6.9 Score=30.84 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=34.0
Q ss_pred EEEEEEEECCCCCeeEEecCcC-CC----------CCCCCCCCccc----CcccCCCCceEEEEEEcce---eeeEEE
Q 009960 14 FVHVNVFNNLDEPLLFTWNGIQ-QR----------LNSWQDGVSGT----NCPILPRKNWTYVFQVKDQ---IGSFFY 73 (521)
Q Consensus 14 ~v~v~~~N~l~~~~~iH~HG~~-~~----------~~~~~DG~~~~----q~~i~pG~~~~y~f~~~~~---~Gt~wY 73 (521)
.+.++++|..+.+.+|.+.--. .. .=-|++|-.-. ...|.||++.+|++.++.. +|+|..
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 4678888888877777764321 00 01246665433 4569999999999999744 688854
No 81
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=77.03 E-value=6.1 Score=37.78 Aligned_cols=78 Identities=8% Similarity=0.024 Sum_probs=56.0
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.++.|+.|++.+++.+-. |.|+|-+-|. ..| +-||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~ts~DVi--------Hsf~ip~~~~-----------------k~d---~~Pg~~~~~~~~~~~~g 190 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSADVI--------HSWTVPSLGV-----------------KVD---AIPGRLNQLSFEPKRPG 190 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCccc--------cceeccccCc-----------------eeE---CCCCcceeEEEEeCCCE
Confidence 3457889999999999987533 3555544321 223 34788889999999999
Q ss_pred eeEEeecchhhh-hccceEEEEEeCCC
Q 009960 452 MWNLRSQLLQNW-FLGQELYIRVHNSD 477 (521)
Q Consensus 452 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 477 (521)
.+...|.-+-.. |..|-..++|..++
T Consensus 191 ~y~~~C~e~CG~~H~~M~~~v~v~~~~ 217 (228)
T MTH00140 191 VFYGQCSEICGANHSFMPIVVEAVPLE 217 (228)
T ss_pred EEEEECccccCcCcCCCeEEEEEECHH
Confidence 999999976444 56677777776554
No 82
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=72.85 E-value=11 Score=36.07 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=57.5
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.+|.|+.|++.++..+-. |.|+|-+.|. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~~-----------------k~da~---PG~~~~~~~~~~~~G 190 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAEDVL--------HSWAVPALGV-----------------KMDAV---PGRLNQTAFIASRPG 190 (230)
T ss_pred cceEEEecCcEEEEEEEeCccc--------cceeccccCC-----------------ccccC---CCceEEEEEEeCCce
Confidence 3456789999999999887643 5677766542 23443 688888999999999
Q ss_pred eeEEeecchh-hhhccceEEEEEeCCC
Q 009960 452 MWNLRSQLLQ-NWFLGQELYIRVHNSD 477 (521)
Q Consensus 452 ~w~~HCHil~-H~d~GMm~~~~V~~~~ 477 (521)
.+...|.-+- -.|..|-..++|.+++
T Consensus 191 ~~~g~C~e~CG~~H~~M~~~v~vv~~~ 217 (230)
T MTH00129 191 VFYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEEChhhccccccCCcEEEEEECHH
Confidence 9999998753 3466777777776543
No 83
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=72.32 E-value=14 Score=33.04 Aligned_cols=76 Identities=13% Similarity=0.248 Sum_probs=51.7
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.+.++.|+.|++.++..+-. |.|.+ -+.+. ..|.+ ||....+.|.++.||.+
T Consensus 74 ~LvLP~g~~Vr~~lTS~DVI-HSF~V-------P~lgv-----------------K~Dav---PGr~n~l~~~~~~~G~y 125 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDVI-HSWSV-------PSLGI-----------------KADAI---PGRLHKINTFILREGVF 125 (162)
T ss_pred CEEEeCCCEEEEEEEeCccc-eeeec-------cccCc-----------------eeecc---CCceEEEEEecCCCeEE
Confidence 46789999999988876543 55444 33321 24444 67778889999999999
Q ss_pred EEeecchh-hhhccceEEEEEeCCC
Q 009960 454 NLRSQLLQ-NWFLGQELYIRVHNSD 477 (521)
Q Consensus 454 ~~HCHil~-H~d~GMm~~~~V~~~~ 477 (521)
...|.-+- --|..|-..+.|..++
T Consensus 126 ~gqCsElCG~gHs~M~~~V~vvs~~ 150 (162)
T PTZ00047 126 YGQCSEMCGTLHGFMPIVVEAVSPE 150 (162)
T ss_pred EEEcchhcCcCccCceEEEEEeCHH
Confidence 99999763 2334566666665543
No 84
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=71.30 E-value=12 Score=35.74 Aligned_cols=77 Identities=10% Similarity=0.129 Sum_probs=55.8
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCee
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
+.+.++.|+.|++.++..+-. |.|+|-+.|. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDVL--------HSWAVPSLGL-----------------KTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECccc--------cccccccccc-----------------ceecC---CCceEEEEEecCCcEE
Confidence 457789999999999887643 4666655432 34544 6888889999999999
Q ss_pred eEEeecchhhh-hccceEEEEEeCCC
Q 009960 453 WNLRSQLLQNW-FLGQELYIRVHNSD 477 (521)
Q Consensus 453 w~~HCHil~H~-d~GMm~~~~V~~~~ 477 (521)
+..-|.-+-.. |.-|...++|..++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHH
Confidence 99999876433 55666677766543
No 85
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=70.99 E-value=32 Score=31.33 Aligned_cols=96 Identities=9% Similarity=-0.053 Sum_probs=59.3
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccc-cCCCCC--C-CCCC--CCCCCcceEEEeCCCCEEEEEEE
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIG-EWAPES--R-STYN--LFDPVVRSTVQVYPGGWTAVYAF 446 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g-~~~~~~--~-~~~n--~~~p~~rDTv~vp~~g~v~irf~ 446 (521)
..+-++.|-.|.++|.|....+|- +-|+..+.. +..+.- + ...+ -..+.--..=-+.+|.....-|.
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHn-------l~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~ 157 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHN-------LKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN 157 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCcc-------EEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEec
Confidence 346789999999999999877754 444443321 111100 0 0000 00111111122335666666677
Q ss_pred ecCCeeeEEeecchhhhhccceEEEEEeC
Q 009960 447 LDNPGMWNLRSQLLQNWFLGQELYIRVHN 475 (521)
Q Consensus 447 adnpG~w~~HCHil~H~d~GMm~~~~V~~ 475 (521)
.-.||.+.+=|=+.-|...||=..+.|-.
T Consensus 158 ~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 158 DTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred cCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 77899999999999999999999887753
No 86
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=70.73 E-value=45 Score=26.45 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=40.7
Q ss_pred EEecCcEE--EEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeE-EecCCcEEEEEEEeCC-CCcceEEEecc
Q 009960 161 TVTKGMTY--RFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSL-DVHVGQSYSVLVTADQ-NEADYYIVASP 235 (521)
Q Consensus 161 ~v~~G~~~--rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v-~l~pGeR~dv~v~~~~-~~g~~~i~~~~ 235 (521)
.+..|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+.... .+|.|.|++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 45677765 678889887654343333 34566554 33445 7899999999888763 57888887754
No 87
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=70.39 E-value=8.9 Score=36.33 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=56.2
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.+.++.|+.|++.+++.+- .| +|+|-+.+. .+|.+ ||....+.|.++.||.|
T Consensus 131 ~l~iP~g~~v~~~ltS~DV-iH-------sf~vP~l~~-----------------k~dai---PG~~~~~~~~~~~~G~y 182 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADT-MT-------SFWIPQLGG-----------------QKYAM---TGMTMNWYLQADQVGTY 182 (217)
T ss_pred cEEEECCCEEEEEEECCch-hh-------hhhchhhCc-----------------eeecC---CCceEEEEEEeCCCEEE
Confidence 4678999999999987753 23 566655432 45665 78889999999999999
Q ss_pred EEeecchh-hhhccceEEEEEeCCC
Q 009960 454 NLRSQLLQ-NWFLGQELYIRVHNSD 477 (521)
Q Consensus 454 ~~HCHil~-H~d~GMm~~~~V~~~~ 477 (521)
--.|=-+- --|.-|...+.|.+++
T Consensus 183 ~g~Cae~CG~~Hs~M~~~v~v~~~~ 207 (217)
T TIGR01432 183 RGRNANFNGEGFADQTFDVNAVSEK 207 (217)
T ss_pred EEEehhhcCccccCCeEEEEEeCHH
Confidence 99997542 3356777788777654
No 88
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=68.78 E-value=28 Score=32.32 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=54.5
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.+.++.|+.+++.+...+ ..|-| +|-+.+ ..+|.+ ||....+.|.++.||.+
T Consensus 117 ~l~lp~g~~v~~~ltS~D-ViHsf-------~vp~l~-----------------~k~d~~---PG~~~~~~~~~~~~G~y 168 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-VIHSF-------SVPDLN-----------------LKMDAI---PGRINHLFFCPDRHGVF 168 (194)
T ss_pred eEEEeCCCEEEeeeecCc-cccce-------eccccC-----------------ceeecC---CCceEEEEEEcCCCEEE
Confidence 467899999999888764 34544 443322 134444 78889999999999999
Q ss_pred EEeecchh-hhhccceEEEEEeCCC
Q 009960 454 NLRSQLLQ-NWFLGQELYIRVHNSD 477 (521)
Q Consensus 454 ~~HCHil~-H~d~GMm~~~~V~~~~ 477 (521)
-.-|.-+- -.|..|-..++|.+++
T Consensus 169 ~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 169 VGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEeehhhCcCcccCcEEEEEEcCC
Confidence 99999763 3366777778777654
No 89
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=66.59 E-value=19 Score=29.05 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=41.0
Q ss_pred EecCcEEEEEEE--ecCccceeeEEEcCc--eeEEEEecCCcccceeeeeE-EecCCcEEEEEEEeCCC--CcceEEEec
Q 009960 162 VTKGMTYRFRIS--NVGSVFSFNFRIQNH--KMVLVETEGSYTNQITLRSL-DVHVGQSYSVLVTADQN--EADYYIVAS 234 (521)
Q Consensus 162 v~~G~~~rlRli--Na~~~~~~~~~i~gh--~~~via~DG~~~~p~~~d~v-~l~pGeR~dv~v~~~~~--~g~~~i~~~ 234 (521)
-+|||++.||.+ +... .. -...+. .++|..-+|..+. ...+ .......++.-+.++.. .|.|.|++.
T Consensus 11 YrPGetV~~~~~~~~~~~-~~--~~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DF--KPPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TC--SCESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-cc--ccccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 489999999999 6652 11 112223 3556666665442 2223 45678888888888764 599999987
Q ss_pred c
Q 009960 235 P 235 (521)
Q Consensus 235 ~ 235 (521)
.
T Consensus 85 ~ 85 (99)
T PF01835_consen 85 T 85 (99)
T ss_dssp E
T ss_pred E
Confidence 5
No 90
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=65.85 E-value=42 Score=25.75 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=30.6
Q ss_pred EecCcE--EEEEEEecCccc--eeeEEEcCceeEEEEecCCcc--cceeeeeEEecCCcEEEEEEEeC----CCCcceEE
Q 009960 162 VTKGMT--YRFRISNVGSVF--SFNFRIQNHKMVLVETEGSYT--NQITLRSLDVHVGQSYSVLVTAD----QNEADYYI 231 (521)
Q Consensus 162 v~~G~~--~rlRliNa~~~~--~~~~~i~gh~~~via~DG~~~--~p~~~d~v~l~pGeR~dv~v~~~----~~~g~~~i 231 (521)
|++|+. +++.+-|.+... ...+.+. .-+|=.+ .|..+. .|.||+...+-++.. ..+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 356765 478888987543 2333332 2233222 233333 789998777766653 24789988
Q ss_pred Eec
Q 009960 232 VAS 234 (521)
Q Consensus 232 ~~~ 234 (521)
.+.
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 91
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=64.64 E-value=24 Score=33.76 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=55.2
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.++.|+.+++.++..+-. |.|+|-+-|. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G 190 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAEDVL--------HSWTVPALGV-----------------KMDAV---PGRLNQATFIISRPG 190 (230)
T ss_pred CCeEEEecCCEEEEEEEcCccc--------ccccccccCc-----------------eeEec---CCceEEEEEEeCCcE
Confidence 3456789999999999987644 4666665532 34444 688888899999999
Q ss_pred eeEEeecchhhh-hccceEEEEEeCC
Q 009960 452 MWNLRSQLLQNW-FLGQELYIRVHNS 476 (521)
Q Consensus 452 ~w~~HCHil~H~-d~GMm~~~~V~~~ 476 (521)
.+.--|.-+-.. |.-|-..++|..+
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (230)
T MTH00185 191 LYYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEEEchhhcCcCcCCCeEEEEEECH
Confidence 999999876433 4556666666554
No 92
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=64.60 E-value=7.7 Score=32.47 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=34.0
Q ss_pred EEEEEECCCCCe---eEEecCcCCCC---CCCCCCCcccCcccCCCCceEEEEEEc--ceeee
Q 009960 16 HVNVFNNLDEPL---LFTWNGIQQRL---NSWQDGVSGTNCPILPRKNWTYVFQVK--DQIGS 70 (521)
Q Consensus 16 ~v~~~N~l~~~~---~iH~HG~~~~~---~~~~DG~~~~q~~i~pG~~~~y~f~~~--~~~Gt 70 (521)
.|++.|....+. +=|||=-...+ .-.-.||-|-|.-|+||++|+|.=-++ .+.|+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce
Confidence 588889886654 66897332111 011234444499999999999975432 45666
No 93
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=63.84 E-value=40 Score=25.20 Aligned_cols=65 Identities=26% Similarity=0.302 Sum_probs=37.1
Q ss_pred ceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEec
Q 009960 158 ESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVAS 234 (521)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~ 234 (521)
-.++++.|+++++.+-+.+. +..+.|...+|..+....-.. -..+..-.+.+.+. .+|+|.|++.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 36889999999888876654 223566676765432211111 11122333344554 6899999874
No 94
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=63.44 E-value=21 Score=34.07 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=56.0
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.++.|+.|++.++..+-. |.|+|-+.|. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~lg~-----------------K~Dav---PG~~n~~~~~~~~~G 190 (227)
T MTH00117 139 DHRMVIPMESPIRILITAEDVL--------HSWAVPSLGV-----------------KTDAV---PGRLNQTSFITTRPG 190 (227)
T ss_pred cceEEEecCceEEEEEEecchh--------hcccccccCc-----------------eeEec---CCceEEEEEEEcccc
Confidence 3457789999999999887643 5676665532 34554 688888999999999
Q ss_pred eeEEeecchhhh-hccceEEEEEeCCC
Q 009960 452 MWNLRSQLLQNW-FLGQELYIRVHNSD 477 (521)
Q Consensus 452 ~w~~HCHil~H~-d~GMm~~~~V~~~~ 477 (521)
.+.--|--+=.. |.-|-..++|.+++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 191 VFYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred eEEEEeccccccCccCCeEEEEEcCHH
Confidence 999999876433 45566666665543
No 95
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=62.69 E-value=25 Score=33.57 Aligned_cols=77 Identities=10% Similarity=0.129 Sum_probs=54.9
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCee
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
+.+.+|.|+.|++.+++.+-. |.|+|-+.|. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~~~~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADVI--------HSWTVPSLGV-----------------KVDAV---PGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCCcc--------ccccccccCc-----------------ceecC---CCceEEEEEEeCCCEE
Confidence 456789999999999987533 4555555432 23443 7888889999999999
Q ss_pred eEEeecchhhh-hccceEEEEEeCCC
Q 009960 453 WNLRSQLLQNW-FLGQELYIRVHNSD 477 (521)
Q Consensus 453 w~~HCHil~H~-d~GMm~~~~V~~~~ 477 (521)
+..-|--+-.. |.-|-..++|..++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTK 217 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHH
Confidence 99999876433 56666677766543
No 96
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=61.41 E-value=56 Score=33.61 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=48.4
Q ss_pred eEEEcCcCCCCCCCCCCCceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEE
Q 009960 140 VILMNGKGPFGYQMTREPESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVL 219 (521)
Q Consensus 140 ~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~ 219 (521)
.++|+...+ .+..++|+.|+ ++|.+.|.+.... .|+++ +|+.+-. ..=.|+||.+..+.
T Consensus 33 ~Vti~d~~c-------~p~~~tVpAG~-~~f~V~N~~~~~~--------Efe~~--~~~~vv~---e~EnIaPG~s~~l~ 91 (375)
T PRK10378 33 KVTVNDKQC-------EPMTLTVNAGK-TQFIIQNHSQKAL--------EWEIL--KGVMVVE---ERENIAPGFSQKMT 91 (375)
T ss_pred EEEEECCcc-------ccCceeeCCCC-EEEEEEeCCCCcc--------eEEee--ccccccc---cccccCCCCceEEE
Confidence 356665443 23689999996 9999999987543 34444 2322100 12379999988888
Q ss_pred EEeCCCCcceEEEec
Q 009960 220 VTADQNEADYYIVAS 234 (521)
Q Consensus 220 v~~~~~~g~~~i~~~ 234 (521)
+++ .||+|.+.+.
T Consensus 92 ~~L--~pGtY~~~C~ 104 (375)
T PRK10378 92 ANL--QPGEYDMTCG 104 (375)
T ss_pred Eec--CCceEEeecC
Confidence 777 4899999884
No 97
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=59.71 E-value=28 Score=33.55 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=54.8
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCee
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
+.+.+|.|+.|++.++..+ ..|- |+|-+.|. .+|.+ ||....+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~D-ViHs-------f~iP~lgv-----------------K~Dai---PG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD-VLHS-------FAVPSLGL-----------------KIDAV---PGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcCC-cccc-------eeecccCc-----------------eeecC---CCcceeEEEEcCCCEE
Confidence 4577899999999888764 3344 44444332 35554 6777888999999999
Q ss_pred eEEeecchhhh-hccceEEEEEeCCC
Q 009960 453 WNLRSQLLQNW-FLGQELYIRVHNSD 477 (521)
Q Consensus 453 w~~HCHil~H~-d~GMm~~~~V~~~~ 477 (521)
+.-.|.-+--. |.-|-..++|.+++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~ 228 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLD 228 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHH
Confidence 99999976433 56666677776654
No 98
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=59.45 E-value=27 Score=33.48 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=54.6
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.++.|+.|++.+++.+-. |.|+|-+-|. ..|.+ ||....+.|.++.||
T Consensus 143 dn~lvlP~~~~v~~~itS~DVi--------Hsf~vp~lg~-----------------k~dai---PG~~~~~~~~~~~~G 194 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAADVL--------HSFAVPSLSV-----------------KIDAV---PGRLNQTSFFIKRPG 194 (234)
T ss_pred ceEEEEecCcEEEEEEEeCchh--------ccccccccCc-----------------eeEcc---CCceEeEEEEeCCCE
Confidence 3457889999999999987533 3555554432 34444 678888899999999
Q ss_pred eeEEeecchhh-hhccceEEEEEeCCC
Q 009960 452 MWNLRSQLLQN-WFLGQELYIRVHNSD 477 (521)
Q Consensus 452 ~w~~HCHil~H-~d~GMm~~~~V~~~~ 477 (521)
.+---|.-+=- .|.-|-..++|..++
T Consensus 195 ~y~g~Cse~CG~~Hs~M~i~v~vv~~~ 221 (234)
T MTH00051 195 VFYGQCSEICGANHSFMPIVIEGVSLD 221 (234)
T ss_pred EEEEEChhhcCcccccCeeEEEEECHH
Confidence 99999986533 355666677666543
No 99
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=59.31 E-value=13 Score=31.93 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=26.9
Q ss_pred EEEEEEECCCCCe---eEEecCcCCC---CCCCCCCCcccCcccCCCCceEEE
Q 009960 15 VHVNVFNNLDEPL---LFTWNGIQQR---LNSWQDGVSGTNCPILPRKNWTYV 61 (521)
Q Consensus 15 v~v~~~N~l~~~~---~iH~HG~~~~---~~~~~DG~~~~q~~i~pG~~~~y~ 61 (521)
-.|++.|..+++. +=||-=.... ..-.-+||-|-|.-|.||++|.|.
T Consensus 33 Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 33 YTITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 4688899876654 4466211000 011134444447889999988875
No 100
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=58.09 E-value=70 Score=25.30 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=41.5
Q ss_pred CCCeEEEe---cCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEe
Q 009960 3 PGPLINST---TNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYF 74 (521)
Q Consensus 3 PGP~i~v~---~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH 74 (521)
+.|.+.++ ....|.|+|.|....+..+....... ..+.+ .+..|+||++.+..|.+. ..--||.
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 34566665 23589999999988887777665211 11111 156799999999999872 3334664
No 101
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.68 E-value=27 Score=33.39 Aligned_cols=77 Identities=10% Similarity=0.142 Sum_probs=55.3
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCee
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
+.+.++.|+.+++.++..+-. |.|+|-+-|. ..|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~lg~-----------------k~da~---PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAEDVL--------HSWAVPSLGI-----------------KTDAI---PGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecccc--------ccccccccCc-----------------eEEcc---CCcceeEEEEeCCcEE
Confidence 457889999999999887643 4566655432 34544 6788888999999999
Q ss_pred eEEeecchhh-hhccceEEEEEeCCC
Q 009960 453 WNLRSQLLQN-WFLGQELYIRVHNSD 477 (521)
Q Consensus 453 w~~HCHil~H-~d~GMm~~~~V~~~~ 477 (521)
+-.-|.-+-. -|..|-..++|.+++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHH
Confidence 9999987543 356676677666543
No 102
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=56.57 E-value=31 Score=28.62 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=43.3
Q ss_pred EEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCchhhhcCCceecEEEeC
Q 009960 16 HVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSINFQKAGGGFGPIRVNN 93 (521)
Q Consensus 16 ~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 93 (521)
.|+++|.|.....|..|=- +..-| .| ...+.||+++..+|.. +-.|+--|.|+... ....-...+.|-.
T Consensus 2 ~V~I~N~L~~~~~L~vhC~----S~d~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCK----SKDDD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCCCCCeEEEEee----CCCcc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEe
Confidence 5899999966666666654 11122 22 2458999999999984 44577777788765 1111355555544
No 103
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=54.61 E-value=93 Score=26.63 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=42.6
Q ss_pred eEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcc-------cceeeeeEEecCCcEEEEEEEeCCC
Q 009960 159 SFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYT-------NQITLRSLDVHVGQSYSVLVTADQN 225 (521)
Q Consensus 159 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~d~v~l~pGeR~dv~v~~~~~ 225 (521)
.+++..-..|+|++-..+ ...|.|+|.. ||..++..- .+....++.+..|++|+|.|...+.
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 356666667999998433 4577899887 466666442 3456678899999999999986543
No 104
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=52.05 E-value=41 Score=32.07 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=55.4
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.++.|+.|++.++..+ ..| .|+|-+.+. ++|.+ ||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~D-ViH-------sf~vP~l~~-----------------K~Dai---PG~~n~~~~~~~~~G 190 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAAD-VLH-------SWTVPSLGV-----------------KIDAV---PGRLNQVGFFINRPG 190 (226)
T ss_pred CceEEEecCCEEEEEEecCc-ccc-------ceeccccCc-----------------cccCC---CCcEEEEEEEcCCCE
Confidence 34578899999999888765 334 455555432 45665 678888999999999
Q ss_pred eeEEeecchhh-hhccceEEEEEeCCC
Q 009960 452 MWNLRSQLLQN-WFLGQELYIRVHNSD 477 (521)
Q Consensus 452 ~w~~HCHil~H-~d~GMm~~~~V~~~~ 477 (521)
.+.--|--+-- -|.-|-..++|.+++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (226)
T MTH00139 191 VFYGQCSEICGANHSFMPIVVEAISPK 217 (226)
T ss_pred EEEEEChhhcCcCcCCCeEEEEEeCHH
Confidence 99999986533 355666677666543
No 105
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.57 E-value=47 Score=31.72 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=54.3
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCee
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
+.+.++.|+.|++.++..+- .| .|+|-+.|. .+|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DV-iH-------sf~vp~l~~-----------------k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV-IH-------SWTVPSLGV-----------------KVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCch-hh-------heeccccCC-----------------eeecC---CCceEEEEEEEcCceE
Confidence 45678999999998887653 34 455544432 35655 6888889999999999
Q ss_pred eEEeecchh-hhhccceEEEEEeCCC
Q 009960 453 WNLRSQLLQ-NWFLGQELYIRVHNSD 477 (521)
Q Consensus 453 w~~HCHil~-H~d~GMm~~~~V~~~~ 477 (521)
+.--|--+- .-|.-|-..++|.+++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~ 217 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVN 217 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHH
Confidence 999998763 3355666677666543
No 106
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=49.34 E-value=1.4e+02 Score=24.00 Aligned_cols=58 Identities=26% Similarity=0.296 Sum_probs=36.1
Q ss_pred EEecCcEE--EEEEEecCccceeeEEEc--C---ceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeC-C-CCcceE
Q 009960 161 TVTKGMTY--RFRISNVGSVFSFNFRIQ--N---HKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTAD-Q-NEADYY 230 (521)
Q Consensus 161 ~v~~G~~~--rlRliNa~~~~~~~~~i~--g---h~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~-~-~~g~~~ 230 (521)
.+..|++| .+.|.|.|... ..|++. . ..|.+ +| ..-.|+||+..++.|.+. . ..|.|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 45667776 79999998764 344443 2 11221 22 123699999999999887 2 356654
No 107
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=48.21 E-value=12 Score=30.00 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=26.9
Q ss_pred EEEEEEECCCCCe---eEEecCcCCCC---CCCCCCCcccCcccCCCCceEEEEEE--cceeee
Q 009960 15 VHVNVFNNLDEPL---LFTWNGIQQRL---NSWQDGVSGTNCPILPRKNWTYVFQV--KDQIGS 70 (521)
Q Consensus 15 v~v~~~N~l~~~~---~iH~HG~~~~~---~~~~DG~~~~q~~i~pG~~~~y~f~~--~~~~Gt 70 (521)
-.|++.|..+.+. +=||-=....+ .-.-+||-|-|+-|.||++|.|.=-. ..+.|+
T Consensus 16 Y~I~I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~S~~~l~t~~G~ 79 (90)
T PF04379_consen 16 YRIRIENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYTSGCPLSTPSGS 79 (90)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEEEEESSSEEE
T ss_pred EEEEEEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEcCCCCcCCCCEE
Confidence 4688889887654 44663111000 11134443337779999988886433 234454
No 108
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=48.14 E-value=1.6e+02 Score=24.51 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=13.2
Q ss_pred EEEEEecCcc-ceeeEEEcCce
Q 009960 169 RFRISNVGSV-FSFNFRIQNHK 189 (521)
Q Consensus 169 rlRliNa~~~-~~~~~~i~gh~ 189 (521)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 6788887775 35555555444
No 109
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.41 E-value=53 Score=31.35 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=53.4
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCee
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
+.+.+|.|+.+++.++..+ ..| .|+|-+.|. +.|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLH-------SWAVPSLGV-----------------KMDAV---PGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECC-ccc-------cccccccCc-----------------eeecC---CCceEEEEEEcCCCEE
Confidence 4578899999999888765 334 344444321 35555 6888889999999999
Q ss_pred eEEeecchhhh-hccceEEEEEeCCC
Q 009960 453 WNLRSQLLQNW-FLGQELYIRVHNSD 477 (521)
Q Consensus 453 w~~HCHil~H~-d~GMm~~~~V~~~~ 477 (521)
+..-|--+--. |.-|-..++|.+++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFN 217 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHH
Confidence 99999876444 44555566665543
No 110
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.69 E-value=55 Score=31.95 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=55.2
Q ss_pred eEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCee
Q 009960 373 SVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGM 452 (521)
Q Consensus 373 ~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~ 452 (521)
+.+.++.|+.+++.++..+ ..| .|+|-+.|. .+|.+ ||....+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~D-ViH-------Sf~vP~lgv-----------------K~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAAD-VLH-------SWTVPSLAV-----------------KMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCc-ccc-------ceecccccC-----------------cccCC---CCceeeEEEEcCCcEE
Confidence 4578899999999888765 323 565555432 34554 5777788999999999
Q ss_pred eEEeecchh-hhhccceEEEEEeCCC
Q 009960 453 WNLRSQLLQ-NWFLGQELYIRVHNSD 477 (521)
Q Consensus 453 w~~HCHil~-H~d~GMm~~~~V~~~~ 477 (521)
+.-.|.-+- .-|..|-..++|.+++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~ 251 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLS 251 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHH
Confidence 999999763 3456777777776554
No 111
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.16 E-value=70 Score=30.62 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=55.7
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.+|.|+.|++.++..+- .| .|+|-+.|. ..|.+ ||....+.|.++.||
T Consensus 142 dn~l~lP~~~~v~~~itS~DV-iH-------Sf~vP~lg~-----------------K~Dav---PGr~n~~~~~~~~~G 193 (231)
T MTH00080 142 DNRCVLPCDTNIRFCITSSDV-IH-------SWALPSLSI-----------------KMDAM---SGILSTLCYSFPMPG 193 (231)
T ss_pred eCceEeecCcEEEEEEEeCcc-cc-------cccccccCc-----------------eeecc---CCceEEEEEEEcCce
Confidence 345678999999999987753 34 455544432 45665 578888899999999
Q ss_pred eeEEeecch-hhhhccceEEEEEeCCC
Q 009960 452 MWNLRSQLL-QNWFLGQELYIRVHNSD 477 (521)
Q Consensus 452 ~w~~HCHil-~H~d~GMm~~~~V~~~~ 477 (521)
.+.--|--+ .--|..|-..++|.+++
T Consensus 194 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 220 (231)
T MTH00080 194 VFYGQCSEICGANHSFMPIAVEVTLLD 220 (231)
T ss_pred EEEEEehhhcCcCccCCEEEEEEECHH
Confidence 999999865 33456777787776554
No 112
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=43.90 E-value=1.4e+02 Score=25.33 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=38.7
Q ss_pred EEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcc-cceeeeeEEecCCcEEEEEEEeCCCCc
Q 009960 160 FTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYT-NQITLRSLDVHVGQSYSVLVTADQNEA 227 (521)
Q Consensus 160 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~v~l~pGeR~dv~v~~~~~~g 227 (521)
+++.....|+|.+...+ ...|.|+|.. |++.++..- .+.....+.|..|++|.|.|...+..+
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 44544456899885433 3477888864 454443321 223445788888999998887754333
No 113
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.17 E-value=61 Score=30.85 Aligned_cols=78 Identities=9% Similarity=0.090 Sum_probs=54.5
Q ss_pred eeEEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCe
Q 009960 372 VSVVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPG 451 (521)
Q Consensus 372 ~~~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG 451 (521)
.+.+.++.|+.+++.++..+- .| .|+|-+.|. +.|.+ ||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DV-iH-------sf~vP~lg~-----------------k~dai---PG~~n~~~~~~~~~G 190 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSADV-LH-------SWTLPSLGL-----------------KMDAV---PGRLNQLAFLSSRPG 190 (225)
T ss_pred cceEEEecCCEEEEEEEeCCh-hh-------ccccccccc-----------------cccCC---CCeEEEEEEEcCCCE
Confidence 345778999999999887753 34 444444332 34554 678888999999999
Q ss_pred eeEEeecchh-hhhccceEEEEEeCCC
Q 009960 452 MWNLRSQLLQ-NWFLGQELYIRVHNSD 477 (521)
Q Consensus 452 ~w~~HCHil~-H~d~GMm~~~~V~~~~ 477 (521)
.+---|.-+- --|.-|-..++|.+++
T Consensus 191 ~~~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (225)
T MTH00168 191 SFYGQCSEICGANHSFMPIVVEFVPWE 217 (225)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCHH
Confidence 9999999763 3355666677766543
No 114
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=42.06 E-value=65 Score=32.34 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=53.2
Q ss_pred EEecCCCcEEEEEEEcCCCCccceeecCcceEEEeeccccCCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCCeee
Q 009960 374 VVTGNHKGWIELVFNNNLDVIDSWHLDGFGFHVVGFGIGEWAPESRSTYNLFDPVVRSTVQVYPGGWTAVYAFLDNPGMW 453 (521)
Q Consensus 374 ~~~~~~g~~v~~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~n~~~p~~rDTv~vp~~g~v~irf~adnpG~w 453 (521)
.+.++.|+.|++.++..+-+ | .|+|-+.+. ..|.+ ||-...+.|.+|.||.|
T Consensus 152 eL~iP~g~pV~f~lTS~DVi-H-------SF~IP~Lg~-----------------K~dam---PG~~n~l~~~a~~~G~Y 203 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM-N-------SFFIPRLGS-----------------QIYAM---AGMQTRLHLIANEPGTY 203 (315)
T ss_pred cEEEecCCEEEEEEEEchhh-h-------hhhhhhhCC-----------------eeecC---CCceeEEEEEcCCCEEE
Confidence 46789999999999977543 3 566655432 24444 68888999999999999
Q ss_pred EEeecchh-hhhccceEEEEEe
Q 009960 454 NLRSQLLQ-NWFLGQELYIRVH 474 (521)
Q Consensus 454 ~~HCHil~-H~d~GMm~~~~V~ 474 (521)
.-.|--.- .-+..|...+.+.
T Consensus 204 ~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 204 DGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEChhhcCccccCCeEEEEEE
Confidence 99998753 3345666666665
No 115
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=40.45 E-value=94 Score=25.95 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=27.5
Q ss_pred EEEEEEEecCccc-eeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeC
Q 009960 167 TYRFRISNVGSVF-SFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTAD 223 (521)
Q Consensus 167 ~~rlRliNa~~~~-~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~ 223 (521)
.|+++|+|-+... .+.+.+.|.+ |.-+. ...+.+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~-------~~~l~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP-------GAELQ-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S-------S-EE--ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CeEEE-CCCcceEECCCCEEEEEEEEE
Confidence 5899999988765 6666666532 11111 134678899999888877654
No 116
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=39.18 E-value=2.7e+02 Score=24.44 Aligned_cols=83 Identities=27% Similarity=0.367 Sum_probs=54.2
Q ss_pred CeEEEcCcCCCCCCCCCCCceEEEecC-cEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceee-------eeEEe
Q 009960 139 DVILMNGKGPFGYQMTREPESFTVTKG-MTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITL-------RSLDV 210 (521)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G-~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~-------d~v~l 210 (521)
|.-.||.-+.. ...-..| .+|-|.+-|.|... +.++.-.++|+ +||..+.|..+ +.+.|
T Consensus 51 dFaIIndPg~i---------~~~~~~g~~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l 117 (154)
T COG3354 51 DFAIINDPGQI---------PYVGTDGPYTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRL 117 (154)
T ss_pred cEEEecCCCCC---------ccccCCCceEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEe
Confidence 56677766552 2222212 47899999999763 46778888875 69988866432 46779
Q ss_pred cCCcEE-EEEEEeCCCCcceEEEecc
Q 009960 211 HVGQSY-SVLVTADQNEADYYIVASP 235 (521)
Q Consensus 211 ~pGeR~-dv~v~~~~~~g~~~i~~~~ 235 (521)
.|||-- ++.+.-. ..|.-.|....
T Consensus 118 ~PG~Vg~ev~vn~~-lSGyhri~V~~ 142 (154)
T COG3354 118 SPGQVGREVTVNEA-LSGYHRIVVSL 142 (154)
T ss_pred cCCceeeEEEeccC-CCcceEEEEEc
Confidence 999987 6666544 34665666543
No 117
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=38.42 E-value=74 Score=25.51 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=27.3
Q ss_pred EEEEEEEecCccceeeEEEcCceeEEEEecCCcc--c--ceeeeeEEecCCcEEEEE
Q 009960 167 TYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYT--N--QITLRSLDVHVGQSYSVL 219 (521)
Q Consensus 167 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~--~--p~~~d~v~l~pGeR~dv~ 219 (521)
.|++||-|.+.. .+.|-...+.|...||..- + .+.-..=.|.|||.+..-
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 479999998876 3566666666666666331 1 111233478888866554
No 118
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=35.62 E-value=17 Score=26.95 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=23.0
Q ss_pred EEEecCCcccceeeeeEEecCCcEEEEEE
Q 009960 192 LVETEGSYTNQITLRSLDVHVGQSYSVLV 220 (521)
Q Consensus 192 via~DG~~~~p~~~d~v~l~pGeR~dv~v 220 (521)
.++.||..+....-.+..|..|.|++++-
T Consensus 33 av~vNg~iv~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 33 AVEVNGEIVPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred EEEECCeEeCHHHcCcccCCCCCEEEEEE
Confidence 57788888876666777899999998874
No 119
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=35.40 E-value=1.2e+02 Score=25.73 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=41.2
Q ss_pred EEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccce----eeeeEEecCCcEEEEEEEeCC--CCcceEEEec
Q 009960 161 TVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQI----TLRSLDVHVGQSYSVLVTADQ--NEADYYIVAS 234 (521)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~----~~d~v~l~pGeR~dv~v~~~~--~~g~~~i~~~ 234 (521)
.+..|+.+++|+-=......-.+. -.|.+...+|..+--. ....+....++++.+.++++. .+|+|.|.+.
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 477889888877655433322222 2356677777665321 123455555999999998876 4899999876
Q ss_pred c
Q 009960 235 P 235 (521)
Q Consensus 235 ~ 235 (521)
-
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 4
No 120
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=34.95 E-value=1.8e+02 Score=24.68 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=32.7
Q ss_pred EEecCCEEEEEEEECCCC---CeeEEecC----cCCC-CCCCCCCCcccCcccCCCCceEEEEEEc
Q 009960 8 NSTTNDFVHVNVFNNLDE---PLLFTWNG----IQQR-LNSWQDGVSGTNCPILPRKNWTYVFQVK 65 (521)
Q Consensus 8 ~v~~Gd~v~v~~~N~l~~---~~~iH~HG----~~~~-~~~~~DG~~~~q~~i~pG~~~~y~f~~~ 65 (521)
.+++|..+.+.+.=..++ ..+...|| +... ..+..||=-.+.|||.+|+.++|.+.++
T Consensus 23 ~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 23 VIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred EEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 467788777666532222 22333343 3222 1122444211379999999999999764
No 121
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.65 E-value=47 Score=29.21 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=20.9
Q ss_pred eCCCCEEEEEEEe-cCC---eeeEEeecch
Q 009960 435 VYPGGWTAVYAFL-DNP---GMWNLRSQLL 460 (521)
Q Consensus 435 vp~~g~v~irf~a-dnp---G~w~~HCHil 460 (521)
|+||..+.|.++. .|| |+|.|+|=..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 5789999999944 576 9999999763
No 122
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=33.16 E-value=1.6e+02 Score=24.97 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=32.1
Q ss_pred EEecCCEEEEEEEECCCC-----CeeEEe--cCcCCCCC-CCCCCCc--ccCcccCCCCceEEEEEEc
Q 009960 8 NSTTNDFVHVNVFNNLDE-----PLLFTW--NGIQQRLN-SWQDGVS--GTNCPILPRKNWTYVFQVK 65 (521)
Q Consensus 8 ~v~~Gd~v~v~~~N~l~~-----~~~iH~--HG~~~~~~-~~~DG~~--~~q~~i~pG~~~~y~f~~~ 65 (521)
.+++|+.+.+.+.=..++ .+.+|+ -|+..... +..|+=- +..|||.+|+.++|.+.++
T Consensus 25 ~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 25 KLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred EEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 467788777766533222 122232 34433211 1233311 2479999999999999763
No 123
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=32.72 E-value=74 Score=22.12 Aligned_cols=41 Identities=12% Similarity=-0.019 Sum_probs=30.5
Q ss_pred CCCCcceE-EEeCCCCEEEEEEEecCCeeeEEeecchhhhhc
Q 009960 425 FDPVVRST-VQVYPGGWTAVYAFLDNPGMWNLRSQLLQNWFL 465 (521)
Q Consensus 425 ~~p~~rDT-v~vp~~g~v~irf~adnpG~w~~HCHil~H~d~ 465 (521)
..|..+-+ |..+.|..+.++++...-..+=+||..+.|...
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 34544443 335568888889999988899999999988753
No 124
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=31.73 E-value=1.3e+02 Score=22.24 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=19.9
Q ss_pred EEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecC
Q 009960 160 FTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEG 197 (521)
Q Consensus 160 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG 197 (521)
+++.+|+..+||.-... .+.+.+-..+|.. +|
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g 33 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EG 33 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CC
Confidence 56778888888844322 3566666676644 44
No 125
>COG1470 Predicted membrane protein [Function unknown]
Probab=30.59 E-value=2.4e+02 Score=29.77 Aligned_cols=73 Identities=25% Similarity=0.330 Sum_probs=46.6
Q ss_pred ceEEEecCc--EEEEEEEecCccc--eeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEE--EeCC--CCcce
Q 009960 158 ESFTVTKGM--TYRFRISNVGSVF--SFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLV--TADQ--NEADY 229 (521)
Q Consensus 158 p~~~v~~G~--~~rlRliNa~~~~--~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v--~~~~--~~g~~ 229 (521)
-.+++++|+ ..++++-|.|+.. -+.+.+.+-.=|=+.+|+..+ + .|.||+|-.|-+ +++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 467788886 4589999988654 456666655556667776532 2 355666555444 4443 46899
Q ss_pred EEEecccc
Q 009960 230 YIVASPKL 237 (521)
Q Consensus 230 ~i~~~~~~ 237 (521)
.+......
T Consensus 462 ~i~i~~ks 469 (513)
T COG1470 462 RITITAKS 469 (513)
T ss_pred EEEEEEee
Confidence 98876543
No 126
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=30.39 E-value=2.6e+02 Score=21.68 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=12.2
Q ss_pred EecCcEEEEEEEecCcc
Q 009960 162 VTKGMTYRFRISNVGSV 178 (521)
Q Consensus 162 v~~G~~~rlRliNa~~~ 178 (521)
.+.||+++|++-..-..
T Consensus 3 ~~~Ge~v~~~~~~~~~~ 19 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDG 19 (83)
T ss_pred ccCCCEEEEEEEeCCCe
Confidence 56789888888774443
No 127
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=30.26 E-value=1.8e+02 Score=29.66 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred EEEEEEEECCCCCe--------eEEec---CcCCCCCCCCC-----CCccc-CcccCCCCceEEEEEEcc----------
Q 009960 14 FVHVNVFNNLDEPL--------LFTWN---GIQQRLNSWQD-----GVSGT-NCPILPRKNWTYVFQVKD---------- 66 (521)
Q Consensus 14 ~v~v~~~N~l~~~~--------~iH~H---G~~~~~~~~~D-----G~~~~-q~~i~pG~~~~y~f~~~~---------- 66 (521)
++.+.++|+.+++. +++|= ++....+.+-| |.... +.||+|||+.+.+.++.+
T Consensus 285 ~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA~WEveRL~~ 364 (399)
T TIGR03079 285 RVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDALWEVQRLMA 364 (399)
T ss_pred EEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehhhhHHHHHHH
Q ss_pred --------eeeeEEEecCchhhhcCCceecEE
Q 009960 67 --------QIGSFFYFPSINFQKAGGGFGPIR 90 (521)
Q Consensus 67 --------~~Gt~wYH~H~~~q~~~Gl~G~li 90 (521)
-.|..++-+-.+..+..-+.|++|
T Consensus 365 L~~DpdSrfgGLLff~d~~G~R~~~~I~gpvI 396 (399)
T TIGR03079 365 LLGDPESRFGGLLMFWDPEGNRIINSIAGPVI 396 (399)
T ss_pred HhcCcccccceEEEEEcCCCCEEehhccCccc
No 128
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=29.94 E-value=1.5e+02 Score=25.54 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=31.5
Q ss_pred EEEEEEEecCccceeeEEEcCceeEEEEecCCcc--c--ceeeeeEEecCCcEEEEE
Q 009960 167 TYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYT--N--QITLRSLDVHVGQSYSVL 219 (521)
Q Consensus 167 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~--~--p~~~d~v~l~pGeR~dv~ 219 (521)
.|++||.|.+.. ...|-...+.+...||... + .+.-..=.|.|||.++.-
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 479999997754 4577777777777777532 1 122233467777765543
No 129
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=29.90 E-value=1.1e+02 Score=31.09 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=0.0
Q ss_pred EEEEEEEECCCCCe--------eEEecCcCCCCCC--------CCCCCccc-CcccCCCCceEEEEEEcc----------
Q 009960 14 FVHVNVFNNLDEPL--------LFTWNGIQQRLNS--------WQDGVSGT-NCPILPRKNWTYVFQVKD---------- 66 (521)
Q Consensus 14 ~v~v~~~N~l~~~~--------~iH~HG~~~~~~~--------~~DG~~~~-q~~i~pG~~~~y~f~~~~---------- 66 (521)
++.++++|+.+++. +++|-.-.+.... +.+|.-.. ..||+|||+.+.+..+.+
T Consensus 266 ~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~dA~WeveRL~~ 345 (381)
T PF04744_consen 266 TMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQDAAWEVERLSD 345 (381)
T ss_dssp EEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE-HHHHHTTGGG
T ss_pred EEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEeehhHHHHhhhhh
Q ss_pred --------eeeeEEEecCchhhhcCCceecEE
Q 009960 67 --------QIGSFFYFPSINFQKAGGGFGPIR 90 (521)
Q Consensus 67 --------~~Gt~wYH~H~~~q~~~Gl~G~li 90 (521)
-.|..++.+-.+..+..=+.|++|
T Consensus 346 l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvI 377 (381)
T PF04744_consen 346 LIYDPDSRFGGLLFFFDASGNRYISEIAGPVI 377 (381)
T ss_dssp GGGSSS-EEEEEEEEEETTS-EEEEEEEEE-E
T ss_pred hhcCcccceeEEEEEEcCCCCEEEEeccCccc
No 130
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.71 E-value=3.2e+02 Score=25.31 Aligned_cols=74 Identities=18% Similarity=0.013 Sum_probs=44.3
Q ss_pred EEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCch-hhhcCCc
Q 009960 7 INSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSIN-FQKAGGG 85 (521)
Q Consensus 7 i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~~Gl 85 (521)
+.+..|..|+++++-. +.-+++...++. ..+| .-||..-...|+ ++++|+|.--|..- +.--..|
T Consensus 118 l~lp~g~~v~~~ltS~-DViHsf~vp~l~----~k~d--------~~PG~~~~~~~~-~~~~G~y~g~C~e~CG~~H~~M 183 (194)
T MTH00047 118 LRLVYGVPYHLLVTSS-DVIHSFSVPDLN----LKMD--------AIPGRINHLFFC-PDRHGVFVGYCSELCGVGHSYM 183 (194)
T ss_pred EEEeCCCEEEeeeecC-ccccceeccccC----ceee--------cCCCceEEEEEE-cCCCEEEEEEeehhhCcCcccC
Confidence 5666677777766654 223333332221 1123 347888888888 58899999888842 2223347
Q ss_pred eecEEEeCC
Q 009960 86 FGPIRVNNR 94 (521)
Q Consensus 86 ~G~liV~~~ 94 (521)
.+.+.|.++
T Consensus 184 ~~~v~v~~~ 192 (194)
T MTH00047 184 PIVIEVVDV 192 (194)
T ss_pred cEEEEEEcC
Confidence 777777764
No 131
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=27.93 E-value=3.8e+02 Score=22.76 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=37.9
Q ss_pred EEEEEEEecCccceeeEEEcCce-eEEEEecCCcccc------eeeeeEEecCCcEEEEEEEeC
Q 009960 167 TYRFRISNVGSVFSFNFRIQNHK-MVLVETEGSYTNQ------ITLRSLDVHVGQSYSVLVTAD 223 (521)
Q Consensus 167 ~~rlRliNa~~~~~~~~~i~gh~-~~via~DG~~~~p------~~~d~v~l~pGeR~dv~v~~~ 223 (521)
.++|.|-|.|...- .|.|.+ +..+..||..+.. .....+.|.||++.-+.|...
T Consensus 21 ~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~ 81 (131)
T PF14016_consen 21 HATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWS 81 (131)
T ss_pred EEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEe
Confidence 45999999988644 455553 4555777774421 134579999999999999876
No 132
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.98 E-value=2.6e+02 Score=26.66 Aligned_cols=76 Identities=13% Similarity=-0.051 Sum_probs=46.6
Q ss_pred CeEEEecCCEEEEEEEECCCCCeeEEecCcCCCCCCCCCCCcccCcccCCCCceEEEEEEcceeeeEEEecCch-hhhcC
Q 009960 5 PLINSTTNDFVHVNVFNNLDEPLLFTWNGIQQRLNSWQDGVSGTNCPILPRKNWTYVFQVKDQIGSFFYFPSIN-FQKAG 83 (521)
Q Consensus 5 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~~ 83 (521)
..+.+-.|..|++.+++. +.-++...-++ +++.-.-||..-...|++ +++|+|+-.|..- +.--.
T Consensus 140 n~l~lP~~~~v~~~~ts~-DViHsf~ip~~------------~~k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H~ 205 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSA-DVIHSWTVPSL------------GVKVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANHS 205 (228)
T ss_pred CeEEEeeCcEEEEEEEcC-ccccceecccc------------CceeECCCCcceeEEEEe-CCCEEEEEECccccCcCcC
Confidence 467888888888888885 22222222222 112224578888888885 7899999888831 22223
Q ss_pred CceecEEEeCC
Q 009960 84 GGFGPIRVNNR 94 (521)
Q Consensus 84 Gl~G~liV~~~ 94 (521)
.|.+.++|.++
T Consensus 206 ~M~~~v~v~~~ 216 (228)
T MTH00140 206 FMPIVVEAVPL 216 (228)
T ss_pred CCeEEEEEECH
Confidence 36677777653
No 133
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.47 E-value=45 Score=32.44 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=16.4
Q ss_pred eEEEecCch---------------hhhcCCceecEEEeCC
Q 009960 70 SFFYFPSIN---------------FQKAGGGFGPIRVNNR 94 (521)
Q Consensus 70 t~wYH~H~~---------------~q~~~Gl~G~liV~~~ 94 (521)
.=|||+|.+ -|...-.+-+++|+|.
T Consensus 134 VGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~ 173 (347)
T KOG1554|consen 134 VGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPT 173 (347)
T ss_pred eeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCc
Confidence 469999953 2344456777777764
No 134
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=22.93 E-value=3.8e+02 Score=21.02 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=36.5
Q ss_pred cEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEec
Q 009960 166 MTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVAS 234 (521)
Q Consensus 166 ~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~ 234 (521)
..++|.|.|.|.... .|.+ .... + ......++.|.+|++.++.+.+....|-|-+.+.
T Consensus 20 g~l~l~l~N~g~~~~-~~~v-------~~~~--y-~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAV-TFTV-------YDNA--Y-GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCCcE-EEEE-------EeCC--c-CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 378999999876443 3333 2211 1 1122356788888888888887555676766665
No 135
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=21.19 E-value=77 Score=27.93 Aligned_cols=18 Identities=22% Similarity=0.659 Sum_probs=16.1
Q ss_pred cCcccCCCCceEEEEEEc
Q 009960 48 TNCPILPRKNWTYVFQVK 65 (521)
Q Consensus 48 ~q~~i~pG~~~~y~f~~~ 65 (521)
+-||+.+||.++|.+.+|
T Consensus 106 v~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 106 VYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ccCcccCCCceEEEEEee
Confidence 479999999999999885
No 136
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=20.28 E-value=2.9e+02 Score=29.24 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=32.0
Q ss_pred EEEEEEEecCccc-eeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeC
Q 009960 167 TYRFRISNVGSVF-SFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTAD 223 (521)
Q Consensus 167 ~~rlRliNa~~~~-~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~ 223 (521)
.|++++.|.+... .+.+.+.|. +|..++- ..+.+.+.|||+.++.|...
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~-------~~~~~~~-~~~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGL-------PGIKIEG-PGAPIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecC-------CCcEEEc-CCceEEECCCCEEEEEEEEE
Confidence 5899999988654 666666553 2222211 01278999999998877654
No 137
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=20.09 E-value=2.8e+02 Score=26.42 Aligned_cols=60 Identities=8% Similarity=0.110 Sum_probs=40.1
Q ss_pred ceEEEecCcEEEEEEEecCccceeeEEEcCceeEEEEecCCcccceeeeeEEecCCcEEEEEEEeCCCCcceEEEeccc
Q 009960 158 ESFTVTKGMTYRFRISNVGSVFSFNFRIQNHKMVLVETEGSYTNQITLRSLDVHVGQSYSVLVTADQNEADYYIVASPK 236 (521)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~~i~~~~~ 236 (521)
..+.+..|+.+||++-...... . |+| |.-.-....-||..-.+-++++ .+|.|..+++.+
T Consensus 139 nel~lP~g~pV~~~ltS~DViH--S-------F~V---------P~l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~ 198 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVMN--S-------FFI---------PQLGSQIYAMAGMQTKLHLIAN-EPGVYDGISANY 198 (226)
T ss_pred ceEEEECCCEEEEEEEECchhh--h-------hhh---------hhcCCeeecCCCceEEEEEEeC-CCEEEEEEchhh
Confidence 4677888888888776655432 2 333 2222233455888888888888 799999988754
Done!