BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009961
(521 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91ZH7|ABHD3_MOUSE Abhydrolase domain-containing protein 3 OS=Mus musculus GN=Abhd3
PE=2 SV=1
Length = 411
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 322 AITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNV 370
+TA G H G LE IWP Y+ + FK+FV + EH +L+N+
Sbjct: 368 VLTAYG---GHIGFLEGIWPRQCTYM--DRVFKQFVQAMVEHGHELSNM 411
>sp|O12971|LFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Gallus
gallus GN=LFNG PE=2 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 28/164 (17%)
Query: 212 LHFYYDIWSDSKSTQPFFYWLDVGDGKEVNLEKCPRNVLQRQCI-----KYLGPKEREEF 266
L D W F + DG++ L+K RNV+ C + L K E+
Sbjct: 114 LELLLDTWISRNRDMTFIF----TDGEDEELKKQARNVINTNCSAAHSRQALSCKMAVEY 169
Query: 267 EVVVESGK--LVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQ--------------KKKG 310
+ +ESG+ + +VN K + ++ +Y+G+ + K
Sbjct: 170 DKFIESGRKWFCHVDDDNYVNVRTLVKLLSSYPHTQDIYIGKPSLDRPIQATERISENKM 229
Query: 311 VFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFK 354
H F +GGA R +A + + W GH++ T E +
Sbjct: 230 HPVHFWFATGGAGFCISRGLA---LKMSPWASGGHFMSTAEKIR 270
>sp|Q75I94|BGL08_ORYSJ Beta-glucosidase 8 OS=Oryza sativa subsp. japonica GN=BGLU8 PE=1
SV=1
Length = 568
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 68 NWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFHSPRPVSELDAAATKLQKVYKSYRT- 126
NW VP K+K N PTI++ E + S E T+ + YK+Y T
Sbjct: 392 NWLYIVPTGMYGAVNYIKEKYNNPTIIISENGMDQSGNLTREEFLHDTERIEFYKNYLTE 451
Query: 127 -RRNLADCAVVVEELWWKALD-FAALKRSSVSFFNIEKPETALSRWAR 172
++ + D A VV W LD F L + F + T L R+ +
Sbjct: 452 LKKAIDDGANVVAYFAWSLLDNFEWLSGYTSKFGIVYVDFTTLKRYPK 499
>sp|Q9PR83|SYK_UREPA Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=lysS PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|B1AI47|SYK_UREP2 Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=lysS PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|B5ZAP2|SYK_UREU1 Lysine--tRNA ligase OS=Ureaplasma urealyticum serovar 10 (strain
ATCC 33699 / Western) GN=lysS PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQALELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLIEPTFVY 378
>sp|Q0VC00|ABHD3_BOVIN Abhydrolase domain-containing protein 3 OS=Bos taurus GN=ABHD3 PE=2
SV=1
Length = 411
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 331 AHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTNV 370
H G LE IWP Y+ + FK+FV + EH +L+++
Sbjct: 374 GHIGFLEGIWPRQSTYM--DRVFKQFVQAMIEHGHELSSM 411
>sp|Q54T46|XPP3_DICDI Probable Xaa-Pro aminopeptidase 3 OS=Dictyostelium discoideum
GN=xpnpep3 PE=2 SV=1
Length = 518
Score = 32.3 bits (72), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 57 IMIMERSLSFKNWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFH-SPRPVSELDAAAT 115
I+ +E + +DSNVPEK + SI +D + P + V+ H +P+ +SE+++ +
Sbjct: 457 IITIEPGIYISKYDSNVPEKYRGISIRVEDDVVIPNLNNSPLVLTHLAPKEISEIESIMS 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,407,160
Number of Sequences: 539616
Number of extensions: 8189719
Number of successful extensions: 23186
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 23154
Number of HSP's gapped (non-prelim): 48
length of query: 521
length of database: 191,569,459
effective HSP length: 122
effective length of query: 399
effective length of database: 125,736,307
effective search space: 50168786493
effective search space used: 50168786493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)