Query 009963
Match_columns 521
No_of_seqs 603 out of 4257
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 19:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 8.4E-98 2E-102 823.5 53.1 502 1-519 174-702 (737)
2 TIGR02437 FadB fatty oxidation 100.0 3.2E-96 7E-101 809.4 53.5 502 1-519 166-681 (714)
3 PRK11730 fadB multifunctional 100.0 4.7E-93 1E-97 786.4 53.1 502 1-519 166-681 (715)
4 TIGR02440 FadJ fatty oxidation 100.0 1.1E-92 2.4E-97 781.7 53.1 495 1-519 162-665 (699)
5 PRK11154 fadJ multifunctional 100.0 2.1E-92 4.6E-97 781.3 51.2 495 1-519 167-672 (708)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.8E-74 3.9E-79 612.8 36.7 369 146-518 4-466 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 1.6E-72 3.4E-77 599.9 38.0 373 145-519 5-468 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 3.5E-72 7.6E-77 551.0 30.8 280 146-425 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 3.8E-71 8.1E-76 502.1 19.2 281 144-424 8-298 (298)
10 PRK07819 3-hydroxybutyryl-CoA 100.0 1.1E-64 2.4E-69 504.5 32.1 278 146-423 4-286 (286)
11 PRK08293 3-hydroxybutyryl-CoA 100.0 4.4E-60 9.6E-65 473.6 32.3 279 146-424 2-287 (287)
12 PRK09260 3-hydroxybutyryl-CoA 100.0 1.4E-59 3E-64 470.4 33.3 281 147-427 1-284 (288)
13 PRK05808 3-hydroxybutyryl-CoA 100.0 5.1E-59 1.1E-63 465.1 31.8 277 147-423 3-282 (282)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 7.5E-59 1.6E-63 465.8 32.3 278 146-423 2-290 (291)
15 PLN02545 3-hydroxybutyryl-CoA 100.0 2.5E-58 5.4E-63 463.1 33.7 282 146-427 3-287 (295)
16 PRK07530 3-hydroxybutyryl-CoA 100.0 4E-58 8.7E-63 460.9 33.2 281 146-426 3-286 (292)
17 PRK08269 3-hydroxybutyryl-CoA 100.0 2.1E-57 4.6E-62 456.6 31.1 268 158-425 1-284 (314)
18 PRK07066 3-hydroxybutyryl-CoA 100.0 5.3E-57 1.2E-61 451.7 26.7 277 145-425 5-298 (321)
19 KOG1683 Hydroxyacyl-CoA dehydr 100.0 1.4E-57 3.1E-62 444.1 17.0 344 158-519 1-350 (380)
20 PRK06130 3-hydroxybutyryl-CoA 100.0 5.9E-49 1.3E-53 398.2 31.8 277 146-427 3-286 (311)
21 PRK06129 3-hydroxyacyl-CoA deh 100.0 9.6E-42 2.1E-46 344.5 30.4 263 146-408 1-274 (308)
22 PF02737 3HCDH_N: 3-hydroxyacy 100.0 3.3E-41 7.2E-46 313.0 21.5 180 149-328 1-180 (180)
23 PRK07531 bifunctional 3-hydrox 100.0 8.8E-38 1.9E-42 333.9 27.7 242 146-391 3-252 (495)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 4.4E-35 9.6E-40 266.9 15.3 230 147-379 3-243 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 100.0 1.9E-29 4.1E-34 269.3 17.7 165 251-422 337-504 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 99.9 7.2E-27 1.6E-31 195.1 7.7 94 330-423 1-97 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 9.1E-23 2E-27 217.4 27.3 118 293-410 378-498 (503)
28 COG2084 MmsB 3-hydroxyisobutyr 99.8 3.1E-17 6.6E-22 160.6 18.9 186 148-362 1-207 (286)
29 TIGR01505 tartro_sem_red 2-hyd 99.7 7.8E-17 1.7E-21 161.8 17.4 187 149-365 1-209 (291)
30 PRK07417 arogenate dehydrogena 99.7 8.7E-16 1.9E-20 153.1 19.4 155 148-327 1-167 (279)
31 PRK11559 garR tartronate semia 99.7 9E-16 2E-20 154.5 19.3 188 147-365 2-212 (296)
32 PRK11199 tyrA bifunctional cho 99.6 5.8E-15 1.3E-19 152.7 17.9 171 146-357 97-277 (374)
33 KOG0409 Predicted dehydrogenas 99.6 1.6E-14 3.5E-19 138.9 18.9 191 146-365 34-246 (327)
34 PLN02688 pyrroline-5-carboxyla 99.6 8.8E-14 1.9E-18 137.8 20.6 186 148-362 1-202 (266)
35 PF03446 NAD_binding_2: NAD bi 99.6 2.8E-14 6E-19 130.7 12.6 146 147-325 1-160 (163)
36 PRK15461 NADH-dependent gamma- 99.5 2.4E-13 5.1E-18 136.7 19.0 183 148-362 2-207 (296)
37 PRK06545 prephenate dehydrogen 99.5 1.2E-13 2.7E-18 142.4 16.7 176 148-345 1-195 (359)
38 PRK12491 pyrroline-5-carboxyla 99.5 6.1E-13 1.3E-17 131.7 20.3 189 148-362 3-205 (272)
39 TIGR02441 fa_ox_alpha_mit fatt 99.5 2E-14 4.2E-19 160.3 9.8 101 310-410 626-733 (737)
40 PRK11880 pyrroline-5-carboxyla 99.5 8.4E-13 1.8E-17 130.9 20.1 188 147-362 2-203 (267)
41 TIGR01692 HIBADH 3-hydroxyisob 99.5 5.1E-13 1.1E-17 133.9 17.4 182 152-365 1-206 (288)
42 PRK07679 pyrroline-5-carboxyla 99.5 7.4E-13 1.6E-17 132.1 18.5 189 147-362 3-207 (279)
43 PRK08507 prephenate dehydrogen 99.5 1.2E-12 2.5E-17 130.4 18.9 152 148-327 1-168 (275)
44 PRK15059 tartronate semialdehy 99.5 1.1E-12 2.3E-17 131.5 18.3 185 149-362 2-205 (292)
45 PRK08655 prephenate dehydrogen 99.5 1.7E-12 3.7E-17 136.9 19.2 162 148-334 1-171 (437)
46 PLN02350 phosphogluconate dehy 99.5 3.5E-12 7.7E-17 135.1 20.4 190 146-362 5-225 (493)
47 COG0287 TyrA Prephenate dehydr 99.5 3.2E-12 6.9E-17 126.2 18.3 167 147-337 3-182 (279)
48 PTZ00142 6-phosphogluconate de 99.5 2.6E-12 5.6E-17 135.9 18.6 189 148-363 2-220 (470)
49 PRK07502 cyclohexadienyl dehyd 99.4 2.9E-12 6.3E-17 129.6 17.2 157 146-326 5-178 (307)
50 cd05297 GH4_alpha_glucosidase_ 99.4 3.1E-14 6.8E-19 149.6 1.7 158 148-321 1-184 (423)
51 TIGR00872 gnd_rel 6-phosphoglu 99.4 1.3E-11 2.8E-16 124.3 20.1 189 148-362 1-209 (298)
52 PRK09599 6-phosphogluconate de 99.4 1.9E-11 4E-16 123.4 20.2 183 148-362 1-211 (301)
53 PLN02256 arogenate dehydrogena 99.4 7.1E-12 1.5E-16 125.8 16.7 153 147-326 36-203 (304)
54 TIGR03026 NDP-sugDHase nucleot 99.4 9.3E-12 2E-16 131.0 18.3 204 148-362 1-244 (411)
55 PRK11154 fadJ multifunctional 99.4 5.4E-13 1.2E-17 148.8 8.8 88 327-421 613-706 (708)
56 TIGR02440 FadJ fatty oxidation 99.4 7.1E-13 1.5E-17 147.5 8.9 88 327-421 606-699 (699)
57 PRK12490 6-phosphogluconate de 99.4 3.1E-11 6.7E-16 121.6 19.1 182 148-362 1-210 (299)
58 COG0345 ProC Pyrroline-5-carbo 99.4 1.5E-11 3.3E-16 119.7 15.5 151 148-325 2-158 (266)
59 PLN02858 fructose-bisphosphate 99.4 2E-11 4.3E-16 144.0 19.5 186 148-365 5-217 (1378)
60 PRK15057 UDP-glucose 6-dehydro 99.4 5.5E-12 1.2E-16 130.9 13.1 199 148-362 1-233 (388)
61 PRK11064 wecC UDP-N-acetyl-D-m 99.4 4E-11 8.7E-16 125.9 19.4 198 147-362 3-248 (415)
62 PLN02858 fructose-bisphosphate 99.3 2.8E-11 6E-16 142.7 18.7 190 146-365 323-537 (1378)
63 PRK12557 H(2)-dependent methyl 99.3 1.2E-10 2.6E-15 118.6 20.7 205 159-386 32-260 (342)
64 PRK00094 gpsA NAD(P)H-dependen 99.3 9.9E-11 2.1E-15 119.4 19.2 194 147-360 1-238 (325)
65 PRK05479 ketol-acid reductoiso 99.3 7.3E-11 1.6E-15 118.7 17.3 184 148-357 18-224 (330)
66 PRK06928 pyrroline-5-carboxyla 99.3 5E-11 1.1E-15 118.7 15.9 153 147-324 1-160 (277)
67 TIGR00873 gnd 6-phosphoglucona 99.3 6E-11 1.3E-15 125.6 17.4 187 149-363 1-217 (467)
68 PRK08818 prephenate dehydrogen 99.3 2.5E-11 5.5E-16 124.3 14.0 147 148-336 5-165 (370)
69 PRK07680 late competence prote 99.3 1.7E-10 3.7E-15 114.7 19.6 152 148-326 1-158 (273)
70 PRK06476 pyrroline-5-carboxyla 99.3 2.4E-10 5.3E-15 112.7 18.9 181 148-362 1-194 (258)
71 PRK07634 pyrroline-5-carboxyla 99.3 3.1E-10 6.7E-15 111.0 18.5 189 147-362 4-207 (245)
72 PTZ00082 L-lactate dehydrogena 99.2 1.8E-11 3.9E-16 123.9 9.2 126 147-284 6-153 (321)
73 TIGR00465 ilvC ketol-acid redu 99.2 1.2E-10 2.7E-15 117.1 14.6 204 148-380 4-231 (314)
74 PRK08229 2-dehydropantoate 2-r 99.2 5.8E-10 1.2E-14 114.6 19.4 167 147-330 2-180 (341)
75 PRK14806 bifunctional cyclohex 99.2 3.4E-10 7.3E-15 128.0 18.8 156 147-326 3-176 (735)
76 PLN02600 enoyl-CoA hydratase 99.2 4.6E-11 9.9E-16 117.2 10.3 96 1-132 152-247 (251)
77 PRK08150 enoyl-CoA hydratase; 99.2 4.8E-11 1E-15 117.3 10.4 97 1-133 156-252 (255)
78 PRK11730 fadB multifunctional 99.2 2.7E-11 5.8E-16 135.3 8.9 85 329-421 624-714 (715)
79 KOG1680 Enoyl-CoA hydratase [L 99.2 3.4E-11 7.3E-16 114.6 8.2 97 1-133 191-287 (290)
80 PLN02888 enoyl-CoA hydratase 99.2 6.5E-11 1.4E-15 117.0 10.5 99 1-135 163-263 (265)
81 PRK05862 enoyl-CoA hydratase; 99.2 4.6E-11 1E-15 117.7 9.4 96 1-132 158-253 (257)
82 PRK12478 enoyl-CoA hydratase; 99.2 4.1E-11 8.9E-16 120.3 9.2 97 1-133 173-278 (298)
83 cd01339 LDH-like_MDH L-lactate 99.2 3.6E-11 7.7E-16 121.2 8.7 122 150-283 1-139 (300)
84 PRK08138 enoyl-CoA hydratase; 99.2 6.3E-11 1.4E-15 116.9 10.1 96 1-132 162-257 (261)
85 TIGR02280 PaaB1 phenylacetate 99.2 6.1E-11 1.3E-15 116.8 9.7 96 1-132 157-252 (256)
86 PRK05980 enoyl-CoA hydratase; 99.2 6.1E-11 1.3E-15 117.1 9.5 95 1-131 164-258 (260)
87 PRK07658 enoyl-CoA hydratase; 99.2 8.6E-11 1.9E-15 115.8 10.5 96 1-132 158-253 (257)
88 PTZ00431 pyrroline carboxylate 99.2 6.3E-10 1.4E-14 109.8 16.5 145 148-324 4-153 (260)
89 PRK15182 Vi polysaccharide bio 99.2 9.9E-10 2.1E-14 115.5 18.8 197 148-362 7-244 (425)
90 TIGR02437 FadB fatty oxidation 99.2 4.6E-11 1E-15 133.1 8.9 85 329-421 624-714 (714)
91 PRK08139 enoyl-CoA hydratase; 99.2 9.4E-11 2E-15 116.0 10.0 96 1-132 167-262 (266)
92 PRK07938 enoyl-CoA hydratase; 99.2 6.6E-11 1.4E-15 115.9 8.8 94 1-130 155-248 (249)
93 PRK08258 enoyl-CoA hydratase; 99.2 1E-10 2.2E-15 116.5 10.1 96 1-132 178-273 (277)
94 PRK06143 enoyl-CoA hydratase; 99.2 1.1E-10 2.4E-15 114.9 9.7 94 1-130 163-256 (256)
95 PRK14618 NAD(P)H-dependent gly 99.2 5.8E-10 1.3E-14 113.9 15.1 162 147-327 4-178 (328)
96 PRK08140 enoyl-CoA hydratase; 99.2 1.4E-10 3.1E-15 114.6 10.2 96 1-132 163-258 (262)
97 PRK07799 enoyl-CoA hydratase; 99.2 1.4E-10 3.1E-15 114.6 10.2 96 1-132 164-259 (263)
98 TIGR01915 npdG NADPH-dependent 99.2 8.1E-10 1.7E-14 106.2 15.0 163 148-327 1-189 (219)
99 PRK05809 3-hydroxybutyryl-CoA 99.2 1.4E-10 3.1E-15 114.4 10.1 96 1-132 161-256 (260)
100 PTZ00117 malate dehydrogenase; 99.2 1.1E-10 2.4E-15 118.3 9.4 125 148-284 6-147 (319)
101 PLN02712 arogenate dehydrogena 99.1 6.3E-10 1.4E-14 122.8 16.0 153 147-326 369-536 (667)
102 PLN03214 probable enoyl-CoA hy 99.1 1.3E-10 2.7E-15 115.7 9.4 99 1-135 172-270 (278)
103 PRK06495 enoyl-CoA hydratase; 99.1 1.4E-10 3E-15 114.3 9.6 96 1-132 158-253 (257)
104 PRK09076 enoyl-CoA hydratase; 99.1 1.6E-10 3.4E-15 114.0 9.9 96 1-132 159-254 (258)
105 PRK09674 enoyl-CoA hydratase-i 99.1 2E-10 4.3E-15 113.0 10.4 96 1-132 156-251 (255)
106 PRK06127 enoyl-CoA hydratase; 99.1 1.9E-10 4.1E-15 114.0 10.3 96 1-132 170-265 (269)
107 PRK05981 enoyl-CoA hydratase; 99.1 1.6E-10 3.5E-15 114.5 9.7 96 1-132 167-262 (266)
108 PRK06563 enoyl-CoA hydratase; 99.1 1.8E-10 3.8E-15 113.4 9.9 96 1-132 156-251 (255)
109 PRK06223 malate dehydrogenase; 99.1 1.6E-10 3.5E-15 116.9 9.9 125 147-283 2-143 (307)
110 PRK08252 enoyl-CoA hydratase; 99.1 1.8E-10 3.8E-15 113.3 9.7 96 1-132 155-250 (254)
111 PRK07511 enoyl-CoA hydratase; 99.1 2.1E-10 4.5E-15 113.2 9.7 96 1-132 162-257 (260)
112 COG1004 Ugd Predicted UDP-gluc 99.1 2.9E-09 6.3E-14 107.2 17.6 202 148-361 1-241 (414)
113 PRK09245 enoyl-CoA hydratase; 99.1 2.3E-10 5E-15 113.3 9.8 96 1-132 167-262 (266)
114 PRK07468 enoyl-CoA hydratase; 99.1 2.6E-10 5.6E-15 112.7 10.1 96 1-132 163-258 (262)
115 PRK06210 enoyl-CoA hydratase; 99.1 1.9E-10 4E-15 114.4 9.0 97 1-132 172-268 (272)
116 PRK07657 enoyl-CoA hydratase; 99.1 2.4E-10 5.3E-15 112.7 9.8 96 1-132 161-256 (260)
117 PF02153 PDH: Prephenate dehyd 99.1 1.3E-09 2.9E-14 107.3 14.7 141 162-326 1-157 (258)
118 PRK05995 enoyl-CoA hydratase; 99.1 3E-10 6.6E-15 112.2 10.1 96 1-132 162-258 (262)
119 PRK14619 NAD(P)H-dependent gly 99.1 2.4E-09 5.1E-14 108.4 16.5 140 148-330 5-158 (308)
120 PLN02664 enoyl-CoA hydratase/d 99.1 3E-10 6.5E-15 113.0 9.8 96 1-132 175-271 (275)
121 PRK06494 enoyl-CoA hydratase; 99.1 2.6E-10 5.7E-15 112.4 9.2 96 1-132 158-255 (259)
122 PRK06142 enoyl-CoA hydratase; 99.1 2.8E-10 6.1E-15 113.0 9.4 96 1-132 173-269 (272)
123 PRK06688 enoyl-CoA hydratase; 99.1 3.2E-10 7E-15 111.9 9.7 96 1-132 160-255 (259)
124 PRK08184 benzoyl-CoA-dihydrodi 99.1 1.8E-10 3.9E-15 123.9 7.6 96 2-133 446-545 (550)
125 TIGR03222 benzo_boxC benzoyl-C 99.1 1.8E-10 3.9E-15 123.5 7.1 96 1-132 441-540 (546)
126 PRK03580 carnitinyl-CoA dehydr 99.1 4E-10 8.7E-15 111.3 9.1 96 1-132 158-257 (261)
127 PRK08259 enoyl-CoA hydratase; 99.1 5.1E-10 1.1E-14 110.0 9.6 93 1-130 157-249 (254)
128 TIGR01724 hmd_rel H2-forming N 99.1 3.2E-09 7E-14 104.5 14.8 147 159-326 32-193 (341)
129 PRK07659 enoyl-CoA hydratase; 99.1 4.6E-10 1E-14 110.7 9.1 95 1-132 162-256 (260)
130 COG0240 GpsA Glycerol-3-phosph 99.1 7.1E-10 1.5E-14 110.1 10.3 166 148-330 2-181 (329)
131 PRK07260 enoyl-CoA hydratase; 99.1 6.1E-10 1.3E-14 109.6 9.7 94 1-130 162-255 (255)
132 PRK05674 gamma-carboxygeranoyl 99.0 5.7E-10 1.2E-14 110.4 9.1 96 1-132 164-260 (265)
133 TIGR01929 menB naphthoate synt 99.0 5.6E-10 1.2E-14 110.0 8.0 95 1-132 161-255 (259)
134 COG0677 WecC UDP-N-acetyl-D-ma 99.0 3.8E-08 8.1E-13 98.9 20.8 201 148-362 10-252 (436)
135 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 5.7E-10 1.2E-14 101.5 7.2 105 149-265 1-106 (157)
136 PRK07396 dihydroxynaphthoic ac 99.0 8.9E-10 1.9E-14 109.5 9.2 95 1-132 171-265 (273)
137 PLN02712 arogenate dehydrogena 99.0 7.8E-09 1.7E-13 114.3 17.3 153 147-326 52-219 (667)
138 PRK11423 methylmalonyl-CoA dec 99.0 1.1E-09 2.3E-14 108.2 9.0 96 1-132 160-257 (261)
139 PRK05864 enoyl-CoA hydratase; 99.0 1.2E-09 2.7E-14 108.6 9.5 96 1-132 174-271 (276)
140 PRK09120 p-hydroxycinnamoyl Co 99.0 1.5E-09 3.1E-14 108.0 9.8 94 1-130 168-264 (275)
141 COG2085 Predicted dinucleotide 99.0 2E-08 4.4E-13 93.4 16.1 153 147-327 1-180 (211)
142 PLN02921 naphthoate synthase 99.0 1.5E-09 3.3E-14 110.0 9.4 96 1-133 225-320 (327)
143 PRK09287 6-phosphogluconate de 99.0 1.4E-08 3.1E-13 107.2 16.6 177 158-362 1-208 (459)
144 PF03721 UDPG_MGDP_dh_N: UDP-g 99.0 3.5E-09 7.6E-14 98.7 10.2 108 148-268 1-125 (185)
145 PRK08321 naphthoate synthase; 99.0 2E-09 4.3E-14 108.4 9.1 95 1-132 200-294 (302)
146 TIGR03210 badI 2-ketocyclohexa 99.0 2.2E-09 4.9E-14 105.6 9.1 95 1-132 158-252 (256)
147 PRK06144 enoyl-CoA hydratase; 98.9 3E-09 6.5E-14 105.1 9.2 92 1-132 167-258 (262)
148 KOG2304 3-hydroxyacyl-CoA dehy 98.9 4.8E-10 1E-14 103.6 3.2 51 466-518 201-251 (298)
149 PRK06023 enoyl-CoA hydratase; 98.9 3.1E-09 6.8E-14 104.3 8.9 91 1-128 161-251 (251)
150 PF03807 F420_oxidored: NADP o 98.9 3.6E-09 7.7E-14 87.7 7.8 91 149-263 1-95 (96)
151 PLN02353 probable UDP-glucose 98.9 6E-08 1.3E-12 103.0 18.6 204 147-362 1-252 (473)
152 PF00378 ECH: Enoyl-CoA hydrat 98.9 2.6E-09 5.6E-14 104.5 7.8 92 1-128 154-245 (245)
153 PRK12439 NAD(P)H-dependent gly 98.9 3.1E-08 6.7E-13 101.7 16.0 173 145-332 5-189 (341)
154 PRK08260 enoyl-CoA hydratase; 98.9 4.5E-09 9.8E-14 105.7 9.6 98 1-133 177-275 (296)
155 PRK05870 enoyl-CoA hydratase; 98.9 2.8E-09 6.1E-14 104.5 7.6 90 1-128 159-249 (249)
156 PRK07509 enoyl-CoA hydratase; 98.9 5.2E-09 1.1E-13 103.5 9.1 94 1-132 166-259 (262)
157 PF10727 Rossmann-like: Rossma 98.9 9.8E-09 2.1E-13 89.2 9.5 115 147-285 10-127 (127)
158 PRK06072 enoyl-CoA hydratase; 98.9 7.9E-09 1.7E-13 101.2 9.9 93 1-132 152-244 (248)
159 PRK07327 enoyl-CoA hydratase; 98.9 8.1E-09 1.8E-13 102.3 9.0 92 1-132 170-264 (268)
160 TIGR03189 dienoyl_CoA_hyt cycl 98.8 1.5E-08 3.3E-13 99.3 10.2 94 1-132 152-247 (251)
161 PRK07112 polyketide biosynthes 98.8 1.1E-08 2.4E-13 100.6 9.1 93 1-132 159-251 (255)
162 PRK07827 enoyl-CoA hydratase; 98.8 1.4E-08 3.1E-13 100.2 9.1 93 1-131 164-256 (260)
163 TIGR01763 MalateDH_bact malate 98.8 1.3E-08 2.8E-13 102.6 8.8 102 148-262 2-118 (305)
164 PRK05617 3-hydroxyisobutyryl-C 98.8 7.5E-09 1.6E-13 105.9 6.9 130 1-131 163-321 (342)
165 PRK12921 2-dehydropantoate 2-r 98.8 1.4E-07 3.1E-12 95.3 15.7 167 148-330 1-180 (305)
166 PRK07854 enoyl-CoA hydratase; 98.8 2.3E-08 4.9E-13 97.7 9.5 90 1-132 150-239 (243)
167 PRK07110 polyketide biosynthes 98.8 2.3E-08 5.1E-13 98.0 9.4 89 1-125 158-246 (249)
168 PRK06249 2-dehydropantoate 2-r 98.8 3.4E-07 7.4E-12 92.9 18.0 171 147-333 5-192 (313)
169 PRK06444 prephenate dehydrogen 98.8 1.3E-07 2.7E-12 88.8 13.6 114 148-326 1-120 (197)
170 cd00650 LDH_MDH_like NAD-depen 98.7 3.2E-08 6.8E-13 97.9 9.3 98 150-261 1-118 (263)
171 PRK14620 NAD(P)H-dependent gly 98.7 1.2E-07 2.6E-12 96.8 13.6 167 148-333 1-185 (326)
172 PRK06190 enoyl-CoA hydratase; 98.7 4.3E-08 9.4E-13 96.5 9.5 92 1-128 158-252 (258)
173 PRK06522 2-dehydropantoate 2-r 98.7 1.9E-07 4.1E-12 94.2 13.9 113 148-275 1-114 (304)
174 COG0362 Gnd 6-phosphogluconate 98.7 1.3E-06 2.8E-11 87.6 19.0 228 148-409 4-257 (473)
175 TIGR03376 glycerol3P_DH glycer 98.7 2.1E-07 4.6E-12 94.9 13.7 165 149-330 1-197 (342)
176 PF00725 3HCDH: 3-hydroxyacyl- 98.7 7.3E-09 1.6E-13 86.2 2.2 51 467-519 3-53 (97)
177 COG0447 MenB Dihydroxynaphthoi 98.7 1.7E-08 3.7E-13 92.5 4.3 91 2-132 181-274 (282)
178 COG1023 Gnd Predicted 6-phosph 98.7 2.4E-06 5.1E-11 80.2 18.4 187 148-362 1-210 (300)
179 COG1024 CaiD Enoyl-CoA hydrata 98.7 8.9E-08 1.9E-12 94.4 9.6 92 1-130 162-254 (257)
180 TIGR02354 thiF_fam2 thiamine b 98.6 6.8E-08 1.5E-12 91.2 7.8 104 148-259 22-142 (200)
181 PTZ00345 glycerol-3-phosphate 98.6 3.8E-07 8.2E-12 93.7 13.0 171 148-330 12-206 (365)
182 PLN02874 3-hydroxyisobutyryl-C 98.6 5.3E-08 1.1E-12 101.0 6.7 127 1-128 168-330 (379)
183 PRK12480 D-lactate dehydrogena 98.5 3.4E-07 7.5E-12 93.2 9.8 100 148-275 147-249 (330)
184 PF00056 Ldh_1_N: lactate/mala 98.5 6E-07 1.3E-11 80.0 10.0 103 148-264 1-120 (141)
185 TIGR00112 proC pyrroline-5-car 98.5 6.6E-06 1.4E-10 80.4 16.5 168 170-362 9-185 (245)
186 COG1893 ApbA Ketopantoate redu 98.4 1.3E-05 2.8E-10 80.9 17.6 166 148-327 1-176 (307)
187 KOG1679 Enoyl-CoA hydratase [L 98.4 3.5E-07 7.7E-12 83.8 5.1 97 1-133 188-288 (291)
188 KOG1682 Enoyl-CoA isomerase [L 98.4 8.3E-07 1.8E-11 80.7 7.4 96 1-132 188-283 (287)
189 cd05291 HicDH_like L-2-hydroxy 98.4 9.8E-07 2.1E-11 89.2 8.8 101 148-262 1-117 (306)
190 PRK08290 enoyl-CoA hydratase; 98.4 7.1E-07 1.5E-11 89.3 7.3 81 1-117 180-262 (288)
191 COG4007 Predicted dehydrogenas 98.4 3.9E-05 8.4E-10 72.8 18.1 147 159-326 33-194 (340)
192 PRK15076 alpha-galactosidase; 98.3 2.8E-06 6E-11 89.6 10.6 76 148-235 2-84 (431)
193 PRK08788 enoyl-CoA hydratase; 98.3 2.4E-06 5.2E-11 85.2 9.4 90 1-127 185-275 (287)
194 cd05293 LDH_1 A subgroup of L- 98.3 2.2E-06 4.8E-11 86.5 9.1 98 148-259 4-117 (312)
195 PRK05708 2-dehydropantoate 2-r 98.3 6.8E-06 1.5E-10 83.1 12.5 175 148-337 3-186 (305)
196 PRK13243 glyoxylate reductase; 98.3 5.5E-06 1.2E-10 84.6 11.8 101 148-275 151-255 (333)
197 cd01065 NAD_bind_Shikimate_DH 98.3 1.8E-06 3.9E-11 78.0 7.3 119 148-286 20-141 (155)
198 PRK06213 enoyl-CoA hydratase; 98.3 7.2E-07 1.6E-11 86.3 4.9 73 1-109 156-228 (229)
199 PRK05808 3-hydroxybutyryl-CoA 98.3 4.5E-07 9.7E-12 90.7 3.5 55 463-519 184-238 (282)
200 KOG1683 Hydroxyacyl-CoA dehydr 98.3 3.5E-07 7.5E-12 91.1 2.3 76 330-410 294-375 (380)
201 PRK13403 ketol-acid reductoiso 98.2 4.3E-06 9.3E-11 83.3 9.2 144 148-322 17-174 (335)
202 cd05292 LDH_2 A subgroup of L- 98.2 5E-06 1.1E-10 84.1 9.4 97 148-258 1-113 (308)
203 PLN02602 lactate dehydrogenase 98.2 4.3E-06 9.3E-11 85.6 8.9 96 148-259 38-151 (350)
204 PLN02157 3-hydroxyisobutyryl-C 98.2 2.5E-06 5.3E-11 88.7 6.9 88 1-126 196-283 (401)
205 PRK15469 ghrA bifunctional gly 98.2 1.3E-05 2.8E-10 81.0 11.5 101 148-275 137-241 (312)
206 PRK00066 ldh L-lactate dehydro 98.2 5.2E-06 1.1E-10 84.1 8.2 97 148-259 7-119 (315)
207 PRK07819 3-hydroxybutyryl-CoA 98.2 1.1E-06 2.3E-11 88.0 3.1 52 466-519 191-242 (286)
208 PF07991 IlvN: Acetohydroxy ac 98.2 6.3E-06 1.4E-10 73.7 7.5 87 148-260 5-93 (165)
209 PRK07574 formate dehydrogenase 98.2 2.8E-05 6.1E-10 80.5 13.5 103 148-275 193-299 (385)
210 PRK09260 3-hydroxybutyryl-CoA 98.2 1.3E-06 2.8E-11 87.6 3.5 52 466-519 186-237 (288)
211 cd00300 LDH_like L-lactate deh 98.1 7.5E-06 1.6E-10 82.5 8.7 99 150-262 1-115 (300)
212 PRK08272 enoyl-CoA hydratase; 98.1 4.6E-06 9.9E-11 84.2 7.1 42 1-42 188-229 (302)
213 PRK08293 3-hydroxybutyryl-CoA 98.1 1.3E-06 2.8E-11 87.6 3.0 54 464-519 188-241 (287)
214 COG1250 FadB 3-hydroxyacyl-CoA 98.1 1.2E-06 2.6E-11 87.2 2.7 51 466-518 187-237 (307)
215 KOG3124 Pyrroline-5-carboxylat 98.1 1.9E-05 4.1E-10 75.3 10.3 151 148-322 1-156 (267)
216 PLN03139 formate dehydrogenase 98.1 4E-05 8.6E-10 79.4 13.6 103 148-275 200-306 (386)
217 PRK08605 D-lactate dehydrogena 98.1 7E-06 1.5E-10 83.9 7.9 100 148-275 147-251 (332)
218 PRK06035 3-hydroxyacyl-CoA deh 98.1 2E-06 4.3E-11 86.4 3.1 52 466-519 190-241 (291)
219 PRK06436 glycerate dehydrogena 98.1 2.7E-05 5.8E-10 78.3 11.1 123 148-300 123-255 (303)
220 cd05294 LDH-like_MDH_nadp A la 98.1 1.5E-05 3.2E-10 80.7 9.2 123 148-283 1-145 (309)
221 COG0111 SerA Phosphoglycerate 98.0 4.1E-05 8.9E-10 77.6 11.7 112 148-286 143-260 (324)
222 COG0039 Mdh Malate/lactate deh 98.0 1.4E-05 3E-10 79.8 7.7 103 148-263 1-119 (313)
223 PLN02545 3-hydroxybutyryl-CoA 98.0 3.4E-06 7.4E-11 84.9 3.3 54 464-519 186-239 (295)
224 PF02558 ApbA: Ketopantoate re 98.0 5.2E-05 1.1E-09 68.1 10.3 113 150-276 1-116 (151)
225 KOG2380 Prephenate dehydrogena 98.0 0.00017 3.7E-09 71.2 14.0 153 147-326 52-219 (480)
226 PRK07530 3-hydroxybutyryl-CoA 98.0 4.7E-06 1E-10 83.7 3.5 52 466-519 188-239 (292)
227 TIGR01327 PGDH D-3-phosphoglyc 98.0 6.6E-05 1.4E-09 81.5 12.4 129 148-302 139-279 (525)
228 cd05290 LDH_3 A subgroup of L- 98.0 2.5E-05 5.5E-10 78.7 8.4 74 149-234 1-76 (307)
229 PRK05442 malate dehydrogenase; 97.9 2.4E-05 5.2E-10 79.5 7.7 104 147-265 4-133 (326)
230 PLN02928 oxidoreductase family 97.9 8.5E-05 1.8E-09 76.3 11.8 126 148-286 160-289 (347)
231 PLN00112 malate dehydrogenase 97.9 9.5E-05 2.1E-09 77.6 11.7 103 147-263 100-227 (444)
232 cd01487 E1_ThiF_like E1_ThiF_l 97.9 5E-05 1.1E-09 70.2 8.4 95 149-251 1-112 (174)
233 PF00670 AdoHcyase_NAD: S-aden 97.9 6.5E-05 1.4E-09 67.6 8.7 97 148-272 24-123 (162)
234 PF02826 2-Hacid_dh_C: D-isome 97.9 1.9E-05 4.1E-10 73.3 5.4 104 148-276 37-143 (178)
235 PRK13581 D-3-phosphoglycerate 97.9 0.0001 2.2E-09 80.1 11.8 128 148-302 141-280 (526)
236 TIGR01759 MalateDH-SF1 malate 97.9 3.9E-05 8.5E-10 77.8 7.9 103 148-265 4-132 (323)
237 PRK05869 enoyl-CoA hydratase; 97.8 2.5E-05 5.4E-10 75.2 5.3 42 1-42 163-204 (222)
238 TIGR02853 spore_dpaA dipicolin 97.8 5.9E-05 1.3E-09 75.4 7.9 89 148-263 152-241 (287)
239 cd01338 MDH_choloroplast_like 97.8 3.2E-05 7E-10 78.5 6.1 100 148-262 3-128 (322)
240 cd01337 MDH_glyoxysomal_mitoch 97.8 8.2E-05 1.8E-09 74.9 8.8 99 148-265 1-120 (310)
241 TIGR01757 Malate-DH_plant mala 97.8 0.00021 4.5E-09 73.9 11.7 102 148-263 45-171 (387)
242 PRK05225 ketol-acid reductoiso 97.8 0.00029 6.2E-09 73.2 12.5 184 148-358 37-250 (487)
243 KOG2711 Glycerol-3-phosphate d 97.8 0.00013 2.7E-09 72.4 9.5 181 145-330 19-219 (372)
244 TIGR01772 MDH_euk_gproteo mala 97.8 6.3E-05 1.4E-09 75.9 7.3 98 149-265 1-119 (312)
245 PRK08410 2-hydroxyacid dehydro 97.7 0.00017 3.6E-09 73.1 10.3 108 148-286 146-258 (311)
246 PRK15409 bifunctional glyoxyla 97.7 0.00042 9.2E-09 70.4 12.6 101 148-275 146-251 (323)
247 PRK14194 bifunctional 5,10-met 97.7 6.2E-05 1.3E-09 74.8 6.3 71 148-262 160-231 (301)
248 PLN00106 malate dehydrogenase 97.7 0.00017 3.6E-09 73.2 9.3 97 148-263 19-136 (323)
249 PRK07066 3-hydroxybutyryl-CoA 97.7 2.3E-05 4.9E-10 79.3 2.8 52 465-518 188-242 (321)
250 KOG1681 Enoyl-CoA isomerase [L 97.6 0.00011 2.3E-09 68.5 6.4 93 2-130 192-285 (292)
251 PRK06487 glycerate dehydrogena 97.6 0.00032 6.9E-09 71.2 10.5 96 148-275 149-248 (317)
252 PRK13302 putative L-aspartate 97.6 0.00044 9.6E-09 68.6 10.9 70 147-238 6-79 (271)
253 PRK08644 thiamine biosynthesis 97.6 0.00019 4.1E-09 68.5 7.7 104 148-259 29-149 (212)
254 PRK08306 dipicolinate synthase 97.6 0.0003 6.6E-09 70.7 9.5 90 148-264 153-243 (296)
255 cd00704 MDH Malate dehydrogena 97.6 8.3E-05 1.8E-09 75.5 5.3 98 149-262 2-126 (323)
256 PTZ00325 malate dehydrogenase; 97.6 0.00025 5.3E-09 71.9 8.6 35 145-179 6-43 (321)
257 TIGR01771 L-LDH-NAD L-lactate 97.6 0.00012 2.6E-09 73.7 6.3 97 152-262 1-113 (299)
258 KOG2653 6-phosphogluconate deh 97.5 0.0036 7.9E-08 62.3 15.6 195 146-364 5-226 (487)
259 TIGR01758 MDH_euk_cyt malate d 97.5 0.00023 5E-09 72.4 7.7 100 149-263 1-126 (324)
260 PRK00257 erythronate-4-phospha 97.5 0.00012 2.7E-09 75.7 5.8 98 148-275 117-222 (381)
261 KOG0016 Enoyl-CoA hydratase/is 97.5 0.00025 5.4E-09 67.6 7.2 93 1-129 171-263 (266)
262 PF01488 Shikimate_DH: Shikima 97.5 0.00019 4.2E-09 63.4 6.1 75 147-239 12-88 (135)
263 PLN02988 3-hydroxyisobutyryl-C 97.5 0.00053 1.2E-08 71.1 10.0 124 1-127 168-328 (381)
264 PRK13304 L-aspartate dehydroge 97.5 0.00062 1.4E-08 67.3 10.1 86 148-259 2-91 (265)
265 PRK15438 erythronate-4-phospha 97.5 0.00013 2.8E-09 75.3 5.3 98 148-275 117-222 (378)
266 PLN02267 enoyl-CoA hydratase/i 97.4 0.00016 3.5E-09 70.4 5.2 42 1-42 160-202 (239)
267 PRK06932 glycerate dehydrogena 97.4 0.00089 1.9E-08 67.9 10.7 97 148-275 148-248 (314)
268 PRK11790 D-3-phosphoglycerate 97.4 0.00026 5.6E-09 74.4 6.7 99 148-275 152-254 (409)
269 PRK14188 bifunctional 5,10-met 97.4 0.00034 7.3E-09 69.7 7.1 71 148-263 159-231 (296)
270 cd00401 AdoHcyase S-adenosyl-L 97.4 0.00094 2E-08 69.8 10.7 86 148-262 203-289 (413)
271 TIGR00745 apbA_panE 2-dehydrop 97.4 0.0046 9.9E-08 61.8 15.5 157 158-330 2-170 (293)
272 cd01075 NAD_bind_Leu_Phe_Val_D 97.4 0.0012 2.7E-08 62.3 10.6 39 148-186 29-67 (200)
273 PRK06141 ornithine cyclodeamin 97.4 0.00057 1.2E-08 69.4 8.8 93 147-263 125-220 (314)
274 PF02056 Glyco_hydro_4: Family 97.4 0.0014 3.1E-08 60.5 9.9 74 149-234 1-81 (183)
275 cd05197 GH4_glycoside_hydrolas 97.3 0.0018 3.8E-08 68.3 11.9 75 148-234 1-82 (425)
276 TIGR00936 ahcY adenosylhomocys 97.3 0.0012 2.6E-08 68.8 10.4 97 148-273 196-296 (406)
277 KOG1495 Lactate dehydrogenase 97.3 0.0014 3E-08 63.0 9.8 76 146-234 19-96 (332)
278 cd05296 GH4_P_beta_glucosidase 97.3 0.0012 2.7E-08 69.4 10.3 75 148-234 1-83 (419)
279 COG1748 LYS9 Saccharopine dehy 97.3 0.00036 7.8E-09 71.8 6.1 80 147-240 1-82 (389)
280 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.001 2.2E-08 67.5 9.2 94 147-262 178-273 (311)
281 TIGR00507 aroE shikimate 5-deh 97.3 0.00046 1E-08 68.5 6.7 72 148-237 118-189 (270)
282 cd05298 GH4_GlvA_pagL_like Gly 97.3 0.0024 5.2E-08 67.5 12.1 75 148-234 1-82 (437)
283 COG1052 LdhA Lactate dehydroge 97.3 0.00056 1.2E-08 69.4 7.0 102 148-275 147-251 (324)
284 PLN02306 hydroxypyruvate reduc 97.3 0.00069 1.5E-08 70.4 7.8 116 148-275 166-287 (386)
285 TIGR01470 cysG_Nterm siroheme 97.3 0.0025 5.4E-08 60.5 10.9 132 148-318 10-143 (205)
286 COG0569 TrkA K+ transport syst 97.2 0.0023 5E-08 61.7 10.5 94 148-262 1-101 (225)
287 PRK05476 S-adenosyl-L-homocyst 97.2 0.0012 2.6E-08 69.2 9.1 86 148-263 213-300 (425)
288 TIGR02371 ala_DH_arch alanine 97.2 0.0014 3.1E-08 66.8 9.0 94 147-264 128-224 (325)
289 cd01080 NAD_bind_m-THF_DH_Cycl 97.2 0.0015 3.2E-08 59.9 8.0 77 148-268 45-122 (168)
290 PTZ00075 Adenosylhomocysteinas 97.1 0.0018 3.8E-08 68.4 9.1 88 148-266 255-344 (476)
291 PRK12549 shikimate 5-dehydroge 97.1 0.0013 2.7E-08 65.8 7.6 74 148-237 128-203 (284)
292 cd01336 MDH_cytoplasmic_cytoso 97.1 0.0012 2.7E-08 67.2 7.3 101 148-263 3-129 (325)
293 PRK14179 bifunctional 5,10-met 97.1 0.001 2.2E-08 65.8 6.2 70 148-262 159-230 (284)
294 PRK07340 ornithine cyclodeamin 97.0 0.0024 5.2E-08 64.5 8.8 91 148-264 126-219 (304)
295 COG4091 Predicted homoserine d 97.0 0.0089 1.9E-07 59.7 12.3 162 148-327 18-185 (438)
296 PRK06718 precorrin-2 dehydroge 97.0 0.0091 2E-07 56.5 12.0 129 148-317 11-142 (202)
297 PRK04148 hypothetical protein; 97.0 0.0019 4.2E-08 56.4 6.7 95 148-263 18-112 (134)
298 smart00859 Semialdhyde_dh Semi 97.0 0.0043 9.3E-08 53.6 8.6 99 149-267 1-104 (122)
299 PRK00258 aroE shikimate 5-dehy 97.0 0.0017 3.7E-08 64.7 6.9 72 148-238 124-197 (278)
300 cd01078 NAD_bind_H4MPT_DH NADP 97.0 0.0012 2.7E-08 62.0 5.5 40 148-187 29-69 (194)
301 PRK05086 malate dehydrogenase; 97.0 0.0035 7.5E-08 63.5 9.1 95 148-260 1-116 (312)
302 TIGR03222 benzo_boxC benzoyl-C 96.9 0.00068 1.5E-08 73.4 3.8 42 1-42 188-229 (546)
303 PRK08618 ornithine cyclodeamin 96.9 0.0043 9.3E-08 63.3 9.3 94 147-264 127-223 (325)
304 PLN02494 adenosylhomocysteinas 96.9 0.0079 1.7E-07 63.4 11.3 97 148-273 255-355 (477)
305 PLN02851 3-hydroxyisobutyryl-C 96.9 0.0044 9.6E-08 64.7 9.3 124 1-127 201-361 (407)
306 PRK11861 bifunctional prephena 96.9 0.0051 1.1E-07 69.0 10.5 103 230-334 1-119 (673)
307 PF01113 DapB_N: Dihydrodipico 96.9 0.0046 9.9E-08 53.7 7.9 103 148-271 1-107 (124)
308 PRK08184 benzoyl-CoA-dihydrodi 96.9 0.00069 1.5E-08 73.5 3.3 42 1-42 192-233 (550)
309 COG0059 IlvC Ketol-acid reduct 96.9 0.013 2.9E-07 57.5 11.7 179 148-356 19-224 (338)
310 TIGR01035 hemA glutamyl-tRNA r 96.8 0.0023 5E-08 67.6 6.9 38 148-185 181-219 (417)
311 KOG0069 Glyoxylate/hydroxypyru 96.8 0.0041 8.8E-08 62.7 8.1 104 147-274 162-267 (336)
312 COG1712 Predicted dinucleotide 96.8 0.0075 1.6E-07 56.7 9.0 92 148-266 1-96 (255)
313 TIGR00518 alaDH alanine dehydr 96.8 0.0036 7.8E-08 65.0 7.7 39 148-186 168-206 (370)
314 TIGR02992 ectoine_eutC ectoine 96.8 0.0061 1.3E-07 62.2 9.2 91 148-261 130-223 (326)
315 PRK00045 hemA glutamyl-tRNA re 96.8 0.0047 1E-07 65.4 8.6 38 148-185 183-221 (423)
316 PRK09310 aroDE bifunctional 3- 96.7 0.004 8.7E-08 66.8 7.7 70 148-238 333-402 (477)
317 COG2910 Putative NADH-flavin r 96.7 0.0029 6.3E-08 57.7 5.4 38 148-185 1-39 (211)
318 TIGR01809 Shik-DH-AROM shikima 96.6 0.006 1.3E-07 60.9 8.0 40 148-187 126-166 (282)
319 PRK06130 3-hydroxybutyryl-CoA 96.6 0.0012 2.7E-08 66.8 3.0 51 467-519 186-239 (311)
320 PF01118 Semialdhyde_dh: Semia 96.6 0.0029 6.4E-08 54.6 4.9 99 149-268 1-103 (121)
321 PRK13301 putative L-aspartate 96.6 0.011 2.4E-07 57.6 9.3 65 148-237 3-73 (267)
322 COG1064 AdhP Zn-dependent alco 96.6 0.12 2.6E-06 52.5 16.9 40 148-187 168-207 (339)
323 PRK08269 3-hydroxybutyryl-CoA 96.6 0.0013 2.8E-08 66.7 2.9 52 466-519 184-238 (314)
324 PLN00203 glutamyl-tRNA reducta 96.6 0.0038 8.1E-08 67.4 6.1 40 147-186 266-306 (519)
325 PRK12475 thiamine/molybdopteri 96.5 0.0062 1.3E-07 62.4 7.3 33 148-180 25-58 (338)
326 TIGR03200 dearomat_oah 6-oxocy 96.5 0.0081 1.7E-07 61.2 8.0 42 1-42 188-241 (360)
327 TIGR02356 adenyl_thiF thiazole 96.5 0.0046 1E-07 58.6 5.9 32 148-179 22-54 (202)
328 PF03059 NAS: Nicotianamine sy 96.5 0.0066 1.4E-07 59.8 7.1 99 148-261 122-229 (276)
329 PRK08291 ectoine utilization p 96.5 0.013 2.8E-07 60.0 9.6 73 148-237 133-208 (330)
330 KOG2666 UDP-glucose/GDP-mannos 96.5 0.044 9.4E-07 54.0 12.3 203 147-361 1-251 (481)
331 PRK00048 dihydrodipicolinate r 96.5 0.0078 1.7E-07 59.3 7.4 94 148-270 2-99 (257)
332 PRK05562 precorrin-2 dehydroge 96.5 0.023 5.1E-07 54.3 10.3 129 148-317 26-158 (223)
333 PF01408 GFO_IDH_MocA: Oxidore 96.5 0.047 1E-06 46.6 11.5 69 148-239 1-75 (120)
334 PRK06046 alanine dehydrogenase 96.5 0.012 2.7E-07 60.0 9.0 94 147-264 129-225 (326)
335 COG2423 Predicted ornithine cy 96.4 0.015 3.3E-07 58.9 9.2 95 146-263 129-226 (330)
336 PRK00683 murD UDP-N-acetylmura 96.3 0.034 7.3E-07 58.8 11.6 37 147-183 3-39 (418)
337 PRK06153 hypothetical protein; 96.3 0.011 2.5E-07 60.6 7.7 32 148-179 177-209 (393)
338 PRK00961 H(2)-dependent methyl 96.3 0.027 5.8E-07 54.5 9.4 106 218-326 133-242 (342)
339 PRK13303 L-aspartate dehydroge 96.3 0.007 1.5E-07 59.9 5.7 69 148-238 2-73 (265)
340 cd05191 NAD_bind_amino_acid_DH 96.2 0.022 4.7E-07 46.0 7.5 31 148-178 24-55 (86)
341 COG0686 Ald Alanine dehydrogen 96.2 0.0064 1.4E-07 59.9 4.9 96 148-261 169-267 (371)
342 PRK06270 homoserine dehydrogen 96.2 0.051 1.1E-06 55.8 11.9 22 148-169 3-24 (341)
343 PRK06823 ornithine cyclodeamin 96.2 0.026 5.5E-07 57.3 9.5 94 147-264 128-224 (315)
344 PRK14175 bifunctional 5,10-met 96.2 0.016 3.5E-07 57.5 7.8 73 148-264 159-232 (286)
345 COG0169 AroE Shikimate 5-dehyd 96.2 0.014 3E-07 58.0 7.3 75 148-238 127-202 (283)
346 PRK06407 ornithine cyclodeamin 96.2 0.025 5.5E-07 57.0 9.3 95 147-264 117-214 (301)
347 COG1648 CysG Siroheme synthase 96.2 0.079 1.7E-06 50.3 12.1 130 148-317 13-145 (210)
348 PRK13940 glutamyl-tRNA reducta 96.2 0.008 1.7E-07 63.2 5.8 39 148-186 182-221 (414)
349 COG0373 HemA Glutamyl-tRNA red 96.1 0.011 2.5E-07 61.3 6.7 40 148-187 179-219 (414)
350 PF13460 NAD_binding_10: NADH( 96.1 0.011 2.4E-07 54.5 6.0 36 150-185 1-37 (183)
351 PLN02819 lysine-ketoglutarate 96.1 0.059 1.3E-06 62.6 12.9 77 144-239 566-661 (1042)
352 PF02423 OCD_Mu_crystall: Orni 96.1 0.014 3E-07 59.2 7.0 93 148-264 129-226 (313)
353 PRK06719 precorrin-2 dehydroge 96.1 0.064 1.4E-06 48.6 10.5 127 148-317 14-142 (157)
354 PF03435 Saccharop_dh: Sacchar 96.1 0.0088 1.9E-07 62.6 5.5 38 150-187 1-40 (386)
355 TIGR01723 hmd_TIGR 5,10-methen 96.0 0.046 1E-06 53.0 9.7 106 218-326 131-240 (340)
356 PRK09424 pntA NAD(P) transhydr 96.0 0.035 7.5E-07 59.8 10.0 40 148-187 166-205 (509)
357 PF02254 TrkA_N: TrkA-N domain 96.0 0.085 1.8E-06 44.7 10.6 91 150-262 1-97 (116)
358 TIGR01921 DAP-DH diaminopimela 96.0 0.077 1.7E-06 53.6 11.7 33 148-180 4-38 (324)
359 PRK07688 thiamine/molybdopteri 95.9 0.017 3.6E-07 59.3 6.8 33 148-180 25-58 (339)
360 PRK14192 bifunctional 5,10-met 95.9 0.026 5.6E-07 56.2 7.8 71 148-262 160-231 (283)
361 cd05311 NAD_bind_2_malic_enz N 95.9 0.019 4E-07 55.4 6.4 32 148-179 26-60 (226)
362 PRK06199 ornithine cyclodeamin 95.8 0.024 5.3E-07 58.9 7.6 75 147-236 155-233 (379)
363 PRK10669 putative cation:proto 95.8 0.024 5.2E-07 62.3 7.9 97 148-260 418-514 (558)
364 PRK07589 ornithine cyclodeamin 95.8 0.057 1.2E-06 55.4 10.0 96 147-264 129-227 (346)
365 PF00070 Pyr_redox: Pyridine n 95.8 0.018 4E-07 45.6 5.0 35 149-183 1-35 (80)
366 PRK03659 glutathione-regulated 95.8 0.025 5.4E-07 62.7 7.8 97 148-262 401-499 (601)
367 TIGR00036 dapB dihydrodipicoli 95.8 0.036 7.8E-07 54.9 8.1 32 148-179 2-36 (266)
368 TIGR00561 pntA NAD(P) transhyd 95.7 0.048 1E-06 58.6 9.4 40 148-187 165-204 (511)
369 PRK14027 quinate/shikimate deh 95.7 0.022 4.8E-07 56.8 6.5 41 148-188 128-169 (283)
370 PRK09496 trkA potassium transp 95.7 0.085 1.8E-06 56.3 11.2 39 148-186 1-39 (453)
371 PRK00141 murD UDP-N-acetylmura 95.6 0.11 2.4E-06 55.9 12.0 37 146-182 14-50 (473)
372 PRK08374 homoserine dehydrogen 95.6 0.09 2E-06 53.9 10.6 21 148-168 3-23 (336)
373 cd01483 E1_enzyme_family Super 95.6 0.058 1.3E-06 47.9 8.0 32 149-180 1-33 (143)
374 PRK01438 murD UDP-N-acetylmura 95.5 0.29 6.2E-06 52.8 14.6 35 147-181 16-50 (480)
375 PRK12409 D-amino acid dehydrog 95.5 0.016 3.4E-07 61.0 4.7 33 148-180 2-34 (410)
376 cd01484 E1-2_like Ubiquitin ac 95.4 0.039 8.4E-07 53.4 6.9 160 149-316 1-177 (234)
377 PRK14106 murD UDP-N-acetylmura 95.4 0.26 5.6E-06 52.6 13.6 33 148-180 6-38 (450)
378 PRK10637 cysG siroheme synthas 95.3 0.13 2.8E-06 55.1 11.0 130 148-318 13-146 (457)
379 PRK12548 shikimate 5-dehydroge 95.3 0.036 7.9E-07 55.5 6.4 34 148-181 127-161 (289)
380 PRK02318 mannitol-1-phosphate 95.3 0.031 6.7E-07 58.3 6.0 40 148-187 1-41 (381)
381 PRK12550 shikimate 5-dehydroge 95.3 0.065 1.4E-06 53.2 7.9 39 148-186 123-162 (272)
382 PRK06349 homoserine dehydrogen 95.2 0.12 2.7E-06 54.7 10.4 35 148-182 4-49 (426)
383 PF13241 NAD_binding_7: Putati 95.2 0.053 1.2E-06 45.3 6.2 74 148-249 8-82 (103)
384 cd00755 YgdL_like Family of ac 95.2 0.076 1.7E-06 51.3 8.0 33 148-180 12-45 (231)
385 PRK05600 thiamine biosynthesis 95.1 0.059 1.3E-06 55.9 7.5 32 148-179 42-74 (370)
386 PRK12749 quinate/shikimate deh 95.1 0.062 1.4E-06 53.8 7.5 34 148-181 125-159 (288)
387 PRK03562 glutathione-regulated 95.1 0.064 1.4E-06 59.7 8.2 92 148-259 401-496 (621)
388 KOG0023 Alcohol dehydrogenase, 95.1 1.1 2.4E-05 44.8 15.6 38 148-186 183-221 (360)
389 COG0460 ThrA Homoserine dehydr 95.1 0.1 2.3E-06 52.7 8.8 198 147-386 3-216 (333)
390 PRK15116 sulfur acceptor prote 95.1 0.06 1.3E-06 53.1 7.0 33 148-180 31-64 (268)
391 COG1486 CelF Alpha-galactosida 95.1 0.076 1.7E-06 55.4 8.0 75 148-234 4-85 (442)
392 PRK03369 murD UDP-N-acetylmura 95.1 0.2 4.4E-06 54.1 11.7 35 148-182 13-47 (488)
393 PRK05597 molybdopterin biosynt 95.0 0.021 4.6E-07 59.0 3.9 33 148-180 29-62 (355)
394 PRK09496 trkA potassium transp 95.0 0.24 5.3E-06 52.8 12.2 41 147-187 231-271 (453)
395 cd00757 ThiF_MoeB_HesA_family 95.0 0.043 9.3E-07 53.0 5.8 33 148-180 22-55 (228)
396 TIGR02355 moeB molybdopterin s 95.0 0.053 1.1E-06 52.8 6.4 34 148-181 25-59 (240)
397 cd01486 Apg7 Apg7 is an E1-lik 95.0 0.013 2.7E-07 58.4 2.1 31 149-179 1-32 (307)
398 PRK00436 argC N-acetyl-gamma-g 94.9 0.067 1.5E-06 55.0 7.2 100 147-268 2-105 (343)
399 PRK14189 bifunctional 5,10-met 94.9 0.06 1.3E-06 53.4 6.5 71 148-263 159-231 (285)
400 PRK07877 hypothetical protein; 94.9 0.045 9.7E-07 61.3 6.1 32 148-180 108-141 (722)
401 PRK04207 glyceraldehyde-3-phos 94.8 0.14 3E-06 52.6 9.2 106 148-264 2-111 (341)
402 PRK05690 molybdopterin biosynt 94.8 0.065 1.4E-06 52.3 6.5 33 148-180 33-66 (245)
403 CHL00194 ycf39 Ycf39; Provisio 94.8 0.07 1.5E-06 54.1 6.8 36 148-183 1-37 (317)
404 PRK08762 molybdopterin biosynt 94.8 0.023 5.1E-07 59.2 3.4 32 148-179 136-168 (376)
405 PRK08328 hypothetical protein; 94.7 0.037 8.1E-07 53.5 4.4 35 148-182 28-63 (231)
406 PF02882 THF_DHG_CYH_C: Tetrah 94.6 0.072 1.6E-06 48.3 5.8 74 148-265 37-111 (160)
407 PRK14191 bifunctional 5,10-met 94.5 0.099 2.2E-06 51.8 7.0 71 148-262 158-229 (285)
408 cd01076 NAD_bind_1_Glu_DH NAD( 94.5 0.12 2.5E-06 49.9 7.4 31 148-178 32-63 (227)
409 PLN03075 nicotianamine synthas 94.5 0.17 3.7E-06 50.5 8.6 102 147-263 124-234 (296)
410 cd05212 NAD_bind_m-THF_DH_Cycl 94.5 0.12 2.7E-06 45.7 6.8 73 148-264 29-102 (140)
411 TIGR03736 PRTRC_ThiF PRTRC sys 94.5 0.084 1.8E-06 51.3 6.2 33 148-180 12-55 (244)
412 PRK00711 D-amino acid dehydrog 94.5 0.042 9.1E-07 57.9 4.5 34 148-181 1-34 (416)
413 cd01492 Aos1_SUMO Ubiquitin ac 94.4 0.16 3.5E-06 47.9 7.8 33 148-180 22-55 (197)
414 PRK02472 murD UDP-N-acetylmura 94.4 0.41 8.8E-06 51.0 11.9 34 148-181 6-39 (447)
415 PRK06129 3-hydroxyacyl-CoA deh 94.4 0.03 6.5E-07 56.7 3.0 49 466-516 188-239 (308)
416 TIGR01381 E1_like_apg7 E1-like 94.4 0.034 7.4E-07 60.6 3.6 32 148-179 339-371 (664)
417 PRK08223 hypothetical protein; 94.3 0.046 9.9E-07 54.3 4.1 33 148-180 28-61 (287)
418 PRK12828 short chain dehydroge 94.3 0.082 1.8E-06 50.6 5.8 38 148-185 8-46 (239)
419 PF13380 CoA_binding_2: CoA bi 94.3 0.12 2.6E-06 44.3 6.1 79 148-258 1-84 (116)
420 PRK06392 homoserine dehydrogen 94.2 0.13 2.9E-06 52.3 7.2 21 149-169 2-22 (326)
421 COG1063 Tdh Threonine dehydrog 94.2 0.18 4E-06 51.9 8.4 40 149-188 171-211 (350)
422 PRK14178 bifunctional 5,10-met 94.1 0.15 3.3E-06 50.4 7.2 73 148-264 153-226 (279)
423 PRK08300 acetaldehyde dehydrog 94.1 0.3 6.5E-06 49.0 9.3 97 148-265 5-104 (302)
424 cd01490 Ube1_repeat2 Ubiquitin 94.1 0.12 2.6E-06 54.5 6.7 162 149-318 1-186 (435)
425 PLN00016 RNA-binding protein; 94.0 0.11 2.4E-06 54.1 6.5 37 146-182 51-92 (378)
426 COG0771 MurD UDP-N-acetylmuram 94.0 0.3 6.4E-06 51.7 9.5 36 147-182 7-42 (448)
427 cd05211 NAD_bind_Glu_Leu_Phe_V 93.9 0.17 3.7E-06 48.4 7.1 33 148-180 24-57 (217)
428 PF13450 NAD_binding_8: NAD(P) 93.9 0.077 1.7E-06 40.7 3.8 30 152-181 1-30 (68)
429 PF01266 DAO: FAD dependent ox 93.9 0.069 1.5E-06 54.3 4.7 31 149-179 1-31 (358)
430 COG0499 SAM1 S-adenosylhomocys 93.9 0.17 3.8E-06 51.0 7.1 87 148-263 210-296 (420)
431 KOG1200 Mitochondrial/plastidi 93.8 0.61 1.3E-05 43.3 10.0 40 148-187 14-55 (256)
432 PRK12829 short chain dehydroge 93.8 0.28 6.1E-06 47.8 8.7 39 148-186 12-51 (264)
433 COG1179 Dinucleotide-utilizing 93.8 0.38 8.3E-06 46.1 9.0 36 148-183 31-67 (263)
434 PRK05868 hypothetical protein; 93.8 0.058 1.3E-06 56.1 4.0 36 147-182 1-36 (372)
435 cd01489 Uba2_SUMO Ubiquitin ac 93.8 0.11 2.5E-06 52.3 5.9 32 149-180 1-33 (312)
436 KOG2018 Predicted dinucleotide 93.8 0.27 5.9E-06 48.5 8.1 110 123-247 61-185 (430)
437 PF00899 ThiF: ThiF family; I 93.8 0.072 1.6E-06 46.8 4.0 33 148-180 3-36 (135)
438 PLN02968 Probable N-acetyl-gam 93.7 0.18 3.9E-06 52.5 7.3 101 146-267 37-139 (381)
439 PRK14852 hypothetical protein; 93.6 0.082 1.8E-06 60.5 5.0 33 148-180 333-366 (989)
440 PF01494 FAD_binding_3: FAD bi 93.6 0.062 1.3E-06 54.6 3.8 33 149-181 3-35 (356)
441 TIGR01850 argC N-acetyl-gamma- 93.6 0.17 3.8E-06 52.0 7.0 100 148-268 1-105 (346)
442 COG0673 MviM Predicted dehydro 93.6 0.39 8.5E-06 48.9 9.6 72 147-240 3-81 (342)
443 PRK01710 murD UDP-N-acetylmura 93.6 0.7 1.5E-05 49.5 11.8 34 148-181 15-48 (458)
444 COG0300 DltE Short-chain dehyd 93.5 0.21 4.5E-06 49.1 7.0 47 146-192 5-52 (265)
445 KOG0022 Alcohol dehydrogenase, 93.5 2 4.3E-05 42.9 13.4 40 148-187 194-234 (375)
446 PRK11259 solA N-methyltryptoph 93.5 0.079 1.7E-06 54.8 4.2 32 149-180 5-36 (376)
447 PRK08163 salicylate hydroxylas 93.4 0.075 1.6E-06 55.5 4.1 34 148-181 5-38 (396)
448 PRK06753 hypothetical protein; 93.4 0.079 1.7E-06 54.9 4.1 34 148-181 1-34 (373)
449 cd01079 NAD_bind_m-THF_DH NAD 93.4 0.33 7.1E-06 45.3 7.6 89 148-266 63-160 (197)
450 TIGR01377 soxA_mon sarcosine o 93.4 0.083 1.8E-06 54.8 4.3 32 149-180 2-33 (380)
451 PRK10792 bifunctional 5,10-met 93.3 0.21 4.6E-06 49.5 6.7 71 148-262 160-231 (285)
452 COG0136 Asd Aspartate-semialde 93.3 0.3 6.4E-06 49.3 7.7 97 148-267 2-102 (334)
453 PRK07832 short chain dehydroge 93.3 0.24 5.2E-06 48.8 7.1 38 149-186 2-40 (272)
454 PRK06847 hypothetical protein; 93.2 0.092 2E-06 54.4 4.3 35 147-181 4-38 (375)
455 cd05295 MDH_like Malate dehydr 93.2 0.41 8.9E-06 50.7 9.1 101 148-262 124-250 (452)
456 PRK14176 bifunctional 5,10-met 93.2 0.21 4.6E-06 49.6 6.5 73 148-264 165-238 (287)
457 PRK14982 acyl-ACP reductase; P 93.2 0.16 3.6E-06 51.7 5.9 39 148-186 156-197 (340)
458 PRK01747 mnmC bifunctional tRN 93.2 0.081 1.8E-06 59.5 4.1 33 148-180 261-293 (662)
459 PRK07236 hypothetical protein; 93.2 0.11 2.4E-06 54.2 4.8 35 147-181 6-40 (386)
460 PRK05866 short chain dehydroge 93.1 0.22 4.7E-06 50.0 6.5 40 148-187 41-81 (293)
461 PRK07062 short chain dehydroge 93.0 0.21 4.5E-06 48.9 6.3 40 148-187 9-49 (265)
462 COG0665 DadA Glycine/D-amino a 93.0 0.11 2.4E-06 54.0 4.5 35 147-181 4-38 (387)
463 TIGR03215 ac_ald_DH_ac acetald 93.0 0.45 9.7E-06 47.4 8.5 91 148-264 2-97 (285)
464 PLN03209 translocon at the inn 92.9 0.51 1.1E-05 51.4 9.5 41 148-188 81-122 (576)
465 PRK06194 hypothetical protein; 92.9 0.21 4.6E-06 49.5 6.3 40 148-187 7-47 (287)
466 PRK06196 oxidoreductase; Provi 92.9 0.26 5.7E-06 49.8 6.9 41 148-188 27-68 (315)
467 PRK06057 short chain dehydroge 92.9 0.2 4.2E-06 48.8 5.8 38 148-185 8-46 (255)
468 KOG0068 D-3-phosphoglycerate d 92.7 0.27 5.8E-06 49.2 6.4 108 148-283 147-258 (406)
469 PRK07588 hypothetical protein; 92.7 0.11 2.4E-06 54.3 4.0 34 148-181 1-34 (391)
470 PRK11728 hydroxyglutarate oxid 92.7 0.11 2.5E-06 54.3 4.1 33 148-180 3-37 (393)
471 TIGR03364 HpnW_proposed FAD de 92.6 0.13 2.8E-06 53.1 4.4 32 149-180 2-33 (365)
472 TIGR00137 gid_trmFO tRNA:m(5)U 92.6 0.12 2.6E-06 54.5 4.0 33 149-181 2-34 (433)
473 PRK05335 tRNA (uracil-5-)-meth 92.6 0.13 2.8E-06 54.0 4.2 35 147-181 2-36 (436)
474 PRK06475 salicylate hydroxylas 92.5 0.11 2.4E-06 54.4 3.7 34 148-181 3-36 (400)
475 PRK02705 murD UDP-N-acetylmura 92.5 1.5 3.3E-05 46.8 12.5 33 149-181 2-34 (459)
476 PRK07825 short chain dehydroge 92.4 0.3 6.5E-06 48.1 6.5 39 148-186 6-45 (273)
477 PRK07538 hypothetical protein; 92.4 0.13 2.8E-06 54.3 4.0 34 148-181 1-34 (413)
478 TIGR01082 murC UDP-N-acetylmur 92.3 1.4 3.1E-05 47.0 12.0 33 149-181 1-34 (448)
479 TIGR03840 TMPT_Se_Te thiopurin 92.3 1.4 3.1E-05 42.0 10.6 98 148-257 36-147 (213)
480 PRK08340 glucose-1-dehydrogena 92.2 0.32 7E-06 47.5 6.4 40 148-187 1-41 (259)
481 PRK14874 aspartate-semialdehyd 92.2 0.18 3.9E-06 51.7 4.7 93 148-267 2-99 (334)
482 PRK07878 molybdopterin biosynt 92.2 0.11 2.3E-06 54.6 3.1 33 148-180 43-76 (392)
483 PRK14851 hypothetical protein; 92.2 0.18 3.8E-06 56.4 4.9 33 148-180 44-77 (679)
484 TIGR03366 HpnZ_proposed putati 92.2 1.3 2.8E-05 43.9 10.7 39 148-186 122-161 (280)
485 PRK11101 glpA sn-glycerol-3-ph 92.1 0.15 3.3E-06 55.9 4.3 33 148-180 7-39 (546)
486 PRK14183 bifunctional 5,10-met 92.1 0.34 7.3E-06 48.0 6.2 71 148-262 158-229 (281)
487 PRK07074 short chain dehydroge 92.1 0.24 5.2E-06 48.2 5.2 39 148-186 3-42 (257)
488 PRK08773 2-octaprenyl-3-methyl 92.0 0.15 3.2E-06 53.3 3.9 33 148-180 7-39 (392)
489 cd01491 Ube1_repeat1 Ubiquitin 92.0 1.6 3.4E-05 43.6 10.9 33 148-180 20-53 (286)
490 PF12847 Methyltransf_18: Meth 92.0 0.84 1.8E-05 38.0 7.9 96 148-261 3-110 (112)
491 PRK08277 D-mannonate oxidoredu 92.0 0.34 7.5E-06 47.8 6.3 39 148-186 11-50 (278)
492 TIGR02360 pbenz_hydroxyl 4-hyd 91.9 0.17 3.7E-06 53.0 4.2 34 148-181 3-36 (390)
493 PRK07102 short chain dehydroge 91.9 0.41 8.9E-06 46.1 6.6 39 148-186 2-41 (243)
494 PRK06079 enoyl-(acyl carrier p 91.8 0.27 5.8E-06 48.0 5.3 33 148-180 8-43 (252)
495 TIGR01988 Ubi-OHases Ubiquinon 91.8 0.14 3.1E-06 53.0 3.6 32 150-181 2-33 (385)
496 cd05312 NAD_bind_1_malic_enz N 91.8 0.79 1.7E-05 45.3 8.4 124 148-290 26-173 (279)
497 TIGR03466 HpnA hopanoid-associ 91.8 0.19 4.2E-06 50.6 4.4 35 148-182 1-36 (328)
498 COG0654 UbiH 2-polyprenyl-6-me 91.8 0.18 3.8E-06 52.7 4.2 32 148-179 3-34 (387)
499 PRK14190 bifunctional 5,10-met 91.8 0.55 1.2E-05 46.7 7.3 72 148-263 159-231 (284)
500 TIGR01202 bchC 2-desacetyl-2-h 91.8 0.91 2E-05 45.7 9.3 39 148-186 146-185 (308)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=8.4e-98 Score=823.50 Aligned_cols=502 Identities=28% Similarity=0.418 Sum_probs=449.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-------------chHHHHHHHHHHhhhccCCCcchhhcccCCCC-----CchHH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIE-----PLGEA 62 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-------------~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~-----~~~~~ 62 (521)
|++||++++|+||+++||||+|||+ +++++.|.+|++.++..+.+..+.....++.. .....
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR 253 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence 5799999999999999999999987 55888999999887654212211111111110 00123
Q ss_pred HHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCC
Q 009963 63 REIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG 141 (521)
Q Consensus 63 ~~~~~~a~~~~~~~~~~-~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~ 141 (521)
...+..+++++.+++++ ||||.+++++|+.+...+++++++.|+++|.+|+.|+++++++|+||.++.+++.+..
T Consensus 254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~---- 329 (737)
T TIGR02441 254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFG---- 329 (737)
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCC----
Confidence 45678888999888775 9999999999999999999999999999999999999999999999999999886431
Q ss_pred CCcccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 142 ~~~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
..+++|++|+|||+|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|++++++
T Consensus 330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 13578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~ 301 (521)
+++++||+|||||||++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.|+|||||+++
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchH
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~ 381 (521)
.|++++++.+.++++.+||+||+++|+||||+||++.+|++||++|+++|++|++||.++++||||||||+++|++|||+
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHhhHHHhhCCCCCc--cccHHHHHHHCCCCCccCCceeeeccCCC--CCCCChHHHHHHHHHhhccCccCChhhhhh
Q 009963 382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKVLQS 457 (521)
Q Consensus 382 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~G~~G~k~g~GfY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (521)
++++++.+++.+++++. |++++++|+++|++|+|||+|||+|++++ ++..++++.+++...+. .|. .
T Consensus 570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~----~- 640 (737)
T TIGR02441 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK----A- 640 (737)
T ss_pred HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc----c-
Confidence 99999999998887653 57899999999999999999999998654 47789999888765432 111 0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 458 RQLTLTLRLLWAWVFHLTGEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 458 ~~~~~~~~~i~~rll~~~vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
...+.++|++|++++|+|||++||++|+ +++.||| .+|.+|.|||+ |||.|+|.+|-+
T Consensus 641 --~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID--~a~~~G~GfP~~~gGP~~~aD~~Gld 702 (737)
T TIGR02441 641 --EVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGD--IGAVFGLGFPPFLGGPFRFVDLYGAD 702 (737)
T ss_pred --ccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHH--HHHHhCCCCCCccCCHHHHHHHhCHH
Confidence 0256889999999999999999999999 8999999 99999999997 999999999854
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=3.2e-96 Score=809.44 Aligned_cols=502 Identities=29% Similarity=0.465 Sum_probs=445.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCC-C-CCchHHHHHHHHHHHHHHH-hC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDK-I-EPLGEAREIFKFARAQARK-QA 77 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~-~-~~~~~~~~~~~~a~~~~~~-~~ 77 (521)
|++||++++|++|+++||||+++|++++.+.|.++++++.....++.+....... . .+.......+..+++++.+ +.
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVAG 245 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHHHhhc
Confidence 5799999999999999999999999999999999998866532222221110000 0 0111112235556664444 45
Q ss_pred CCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh
Q 009963 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~ 157 (521)
++||||..++++++.+...+++++++.|+++|.+|+.|+++++++++||.+|++++.+.. .+..+++|++|+|||+|+
T Consensus 246 ~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGaG~ 323 (714)
T TIGR02437 246 PHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGAGI 323 (714)
T ss_pred CCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECCch
Confidence 689999999999999999999999999999999999999999999999999999886422 123567899999999999
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (521)
||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|++++++.+..+++|+++++++++++||+|||||||+
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~ 403 (714)
T TIGR02437 324 MGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVEN 403 (714)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (521)
+++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.|||||||+++.|++++++.+.++++.
T Consensus 404 l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~ 483 (714)
T TIGR02437 404 PKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASK 483 (714)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 318 lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
+||+||+++|+||||+||++.+|++||++|+++|++|++||++|+ +||||||||+++|++|||+++++++.++..++++
T Consensus 484 lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~~~ 563 (714)
T TIGR02437 484 MGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDR 563 (714)
T ss_pred cCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999998 7999999999999999999999999999888775
Q ss_pred Cc--cccHHHHHHHCCCCCccCCceeeeccCC----CCCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHH
Q 009963 397 TY--KSMIIPIMQEDKRAGETTRKGFYLYDER----RKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAW 470 (521)
Q Consensus 397 ~~--~~~~l~~~~~~G~~G~k~g~GfY~y~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r 470 (521)
+. +++++++|+++|++|+|||+|||+|+++ .++..|+++..++...+. ++ +.++.+||++|
T Consensus 564 ~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~~i~~R 630 (714)
T TIGR02437 564 MGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY-----EQ--------RDFDDEEIIAR 630 (714)
T ss_pred cccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc-----cc--------CCCCHHHHHHH
Confidence 42 4589999999999999999999999633 245688998887754432 01 13788999999
Q ss_pred HHHHHHHHHHHHhhcc-ccCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 471 VFHLTGEESCSGLTLL-DRSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 471 ll~~~vnea~~~l~~~-~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
++++|+|||++||++| ++++.||| .++.+|.|||. |||+++|.+|-+
T Consensus 631 ll~~~~nEa~~ll~eGiva~~~dID--~~~~~G~Gfp~~~gGP~~~~D~~Gl~ 681 (714)
T TIGR02437 631 MMIPMINETVRCLEEGIVATAAEAD--MGLVYGLGFPPFRGGAFRYLDSIGVA 681 (714)
T ss_pred HHHHHHHHHHHHHhCCCcCCHHHHH--HHHHhCCCCCCccCCHHHHHHHhCHH
Confidence 9999999999999998 89999999 89999999998 999999999854
No 3
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=4.7e-93 Score=786.38 Aligned_cols=502 Identities=31% Similarity=0.483 Sum_probs=445.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhccc-CCC-CCchHHHHHHHHHHHHHHH-hC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKT-DKI-EPLGEAREIFKFARAQARK-QA 77 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~-~~~-~~~~~~~~~~~~a~~~~~~-~~ 77 (521)
|++||++++|+||+++||||+|||+++++++|.++|++++..+.+|.+..... .+. .+......+++.+++.+.+ +.
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~ 245 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAG 245 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999987532332221100 000 0001122345566655544 45
Q ss_pred CCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh
Q 009963 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~ 157 (521)
++||++..++++++.+...+++++++.|.+.|..++.|+++++++++|+++|..++.+... ...+++|+||+|||+|+
T Consensus 246 ~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~v~ViGaG~ 323 (715)
T PRK11730 246 KHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQAAVLGAGI 323 (715)
T ss_pred cCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccceEEEECCch
Confidence 6899999999999999888999999999999999999999999999999999998765321 12456799999999999
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (521)
||++||..++.+|++|+++|++++.++++.+++.+.+++++++|.+++.+.+..+++|+++++++++++||+|||||||+
T Consensus 324 mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E~ 403 (715)
T PRK11730 324 MGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVEN 403 (715)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEecccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (521)
+++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.|+|||||+++.|++++++.+.++++.
T Consensus 404 l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~ 483 (715)
T PRK11730 404 PKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASK 483 (715)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 318 lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
+||+||+++|+||||+||++.++++||++++++|++++|||.+|+ ++|||||||+++|.+|||+++++.+.++..++++
T Consensus 484 lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~~~ 563 (715)
T PRK11730 484 MGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPDR 563 (715)
T ss_pred hCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999 7999999999999999999999999999888875
Q ss_pred Cc--cccHHHHHHHCCCCCccCCceeeeccCCC----CCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHH
Q 009963 397 TY--KSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAW 470 (521)
Q Consensus 397 ~~--~~~~l~~~~~~G~~G~k~g~GfY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r 470 (521)
.. +++++++|+++|++|+|||+|||+|+++. +...|+.+.+++...+. .+ +.++.+||.+|
T Consensus 564 ~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~---------~~~~~~~i~nR 630 (715)
T PRK11730 564 MKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----PK---------REFSDEEIIAR 630 (715)
T ss_pred cccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----cc---------CCCCHHHHHHH
Confidence 32 46899999999999999999999996431 35578888777765321 00 23788999999
Q ss_pred HHHHHHHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 471 VFHLTGEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 471 ll~~~vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
++.+++|||++||++|+ +++.||| .+|.+|.|||+ |||+++|.+|-+
T Consensus 631 ll~~~~~Ea~~ll~eGvva~~~dID--~a~~~g~G~p~~~gGPf~~~D~~Gld 681 (715)
T PRK11730 631 MMIPMINEVVRCLEEGIVASPAEAD--MALVYGLGFPPFRGGAFRYLDTLGVA 681 (715)
T ss_pred HHHHHHHHHHHHHhcCCcCCHHHHH--HHHHhCCCCCCCcCCHHHHHHHhCHH
Confidence 99999999999999996 9999999 89999999987 999999999854
No 4
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.1e-92 Score=781.68 Aligned_cols=495 Identities=33% Similarity=0.500 Sum_probs=442.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCC--CCchHHHHHHHHHHHHHHHhCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQAP 78 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~ 78 (521)
|++||++++|++|+++||||+|||+++++++|.+||++. . +.++........ .++......+..+.+++.++++
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--K--PIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--C--CCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999751 1 111100000000 0111223345566777777655
Q ss_pred -CCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh
Q 009963 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~ 157 (521)
+||||.++|++++++...+++++++.|++.|..++.|+++++++++|+.+++.++.++. . ..+++++||+|||+|+
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcH
Confidence 79999999999999999999999999999999999999999999999999998876552 1 2346799999999999
Q ss_pred hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccc
Q 009963 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (521)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (521)
||++||..++ ++|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 009963 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (521)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (521)
++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.||+||||+++.|++++++.+.++++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 317 ~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
.+||+||+++|+|||++||++.++++||++++++|++++|||.+|+++|||||||+++|.+|+|+++++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccHHHHHHHCCCCCccCCceeeeccCC-CCCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHHHHHHH
Q 009963 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDER-RKASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLT 475 (521)
Q Consensus 397 ~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~~~ 475 (521)
+.+++++++|+++|++|+|||+|||+|+++ +++..|+.+..++.. .+. .+++..+|.+|++.++
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~-------~~~--------~~~~~g~v~~Rll~~~ 619 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI-------KPG--------VDKEASAVAERCVMLM 619 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc-------CCC--------CCCCHHHHHHHHHHHH
Confidence 888899999999999999999999999854 356778888766521 111 1367899999999999
Q ss_pred HHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 476 GEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 476 vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
+|||++||++|+ ++++||| .++.+|.|||. |||+++|.+|-+
T Consensus 620 ~~Ea~~ll~eGvva~~~dID--~~~~~g~G~p~~~~Gpf~~~D~~Gld 665 (699)
T TIGR02440 620 LNEAVRCLDEGVIRSPRDGD--IGAIFGIGFPPFLGGPFRYIDTLGAD 665 (699)
T ss_pred HHHHHHHHHCCCcCCHHHHH--HHHHhcCCCCCCcCCHHHHHHHhCHH
Confidence 999999999997 9999999 99999999996 999999999854
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.1e-92 Score=781.29 Aligned_cols=495 Identities=32% Similarity=0.484 Sum_probs=444.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCC--CchHHHHHHHHHHHHHHHhCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE--PLGEAREIFKFARAQARKQAP 78 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~ 78 (521)
|++||++++|+||+++||||+|||+++++++|.+||+++.... ++........ ++......+..+++++.++.+
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPAR----RPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCcc----CcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999998842110 0000000000 111223467778888888766
Q ss_pred -CCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCCCCCCCCCcccceEEEEEeCCh
Q 009963 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (521)
Q Consensus 79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~ 157 (521)
+|||+..+|++++.+...++++++..|++.|..++.|+++++++++|+.++..++.+.. . ..+++++||+|||+|+
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 79999999999999999999999999999999999999999999999999998876553 1 2356899999999999
Q ss_pred hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccc
Q 009963 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (521)
Q Consensus 158 mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (521)
||++||..++ .+|++|+++|++++.++++..++.+.+++++++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 009963 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (521)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~ 316 (521)
++++|+++|++++++++|++||+||||++++++|++.+.+|+||+|+|||||++.||+||||++++|++++++.+.++++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 317 ~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
.+||.|++++|+||||+||++.++++||++++++|++++|||.+++++|||+|||+++|.+|+|+++++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CccccHHHHHHHCCCCCccCCceeeeccCCC---CCCCChHHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHHHHH
Q 009963 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFH 473 (521)
Q Consensus 397 ~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~ 473 (521)
+.+++++++|+++|++|+|||+|||+|++++ ++..++++...+.. .+. ++++..+|.+|++.
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~-------~~~--------~~~~~g~i~~Rll~ 624 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI-------TPQ--------SRLSANEIAERCVM 624 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhcc-------CCC--------CCCCHHHHHHHHHH
Confidence 7788999999999999999999999997532 35677877665521 111 13789999999999
Q ss_pred HHHHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 474 LTGEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 474 ~~vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
+|+|||++||++|+ ++++||| .+|.+|.|||+ |||+++|.+|-+
T Consensus 625 ~~~nEa~~ll~eGvva~~~dID--~~~~~G~G~p~~~gGp~~~~D~~Gld 672 (708)
T PRK11154 625 LMLNEAVRCLDEGIIRSARDGD--IGAVFGIGFPPFLGGPFRYMDSLGAG 672 (708)
T ss_pred HHHHHHHHHHHCCCcCCHHHHH--HHHHhcCCCCCccCCHHHHHHHhCHH
Confidence 99999999999997 9999999 99999999998 999999999854
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1.8e-74 Score=612.76 Aligned_cols=369 Identities=30% Similarity=0.456 Sum_probs=325.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+++||+|||+|+||++||.+++++|++|++||++++.++++.+++++.+++++++|.+++++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+|||||||++++|+.+|+++++.+++++||+||||+++++++++.+.+|.|++|+|||+|++.|+|+||++++.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. +|++||.+|+ ++|||||||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999985 9999999999 899999999999999999999
Q ss_pred HHhhHHHhhC-CCC-CccccHHHHHHHCCCCCccCCceeeeccCCCCC-CC-----------------------------
Q 009963 384 ATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKA-SP----------------------------- 431 (521)
Q Consensus 384 ~~~~~~~~~~-~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~~~-~~----------------------------- 431 (521)
++++.+++.+ ++. +.|++++++|+++|++|+|||+|||+|+++++. .+
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988764 554 446788999999999999999999999864321 11
Q ss_pred ----------------------------------------ChHHHHHHHHHhhccCc--cCCh-----------------
Q 009963 432 ----------------------------------------DPEVKKFIEKARSMSGV--AIDP----------------- 452 (521)
Q Consensus 432 ----------------------------------------~~~~~~~~~~~~~~~~~--~~~~----------------- 452 (521)
|+.+..++...+....+ .+.+
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 12222222222211111 1110
Q ss_pred -hhhhhhccCCCHHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHh
Q 009963 453 -KVLQSRQLTLTLRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 518 (521)
Q Consensus 453 -~~~~~~~~~~~~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
+.+. .. .-+...|++|++.+++|||++++++|+++++||| .+|.+|.|||+|||+|+|.+|-
T Consensus 404 Gk~pi-~v-~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID--~a~~~g~G~P~GP~~~~D~~Gl 466 (503)
T TIGR02279 404 GKKVL-QI-ADYPGLLILRTVAMLANEAADAVLQGVASAQDID--TAMRLGVNYPYGPLAWAAQLGW 466 (503)
T ss_pred CCeEE-Ee-CCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhCCCCCcCHHHHHHHhCH
Confidence 0000 00 0112579999999999999999999999999999 9988999999999999999984
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.6e-72 Score=599.87 Aligned_cols=373 Identities=29% Similarity=0.434 Sum_probs=326.0
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
+++++|+|||+|+||++||.+++++|++|++||++++.++++.+++++.+++++++|++++++.+..+++++++++++++
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
++||+|||||||++++|+.+|++++..+++++|++|||||+++++++..+.+|+|++|+|||+|++.|+|+||++++.|+
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts 164 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD 164 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHH
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA 382 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~ 382 (521)
+++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. ++++||++++ ++|||||||+++|++|+|+.
T Consensus 165 ~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv~ 244 (507)
T PRK08268 165 PAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVN 244 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999985 9999999998 79999999999999999999
Q ss_pred HHHhhHHHhhC-CC-CCccccHHHHHHHCCCCCccCCceeeeccCCCC-CCCChH--------------------HHHHH
Q 009963 383 IATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPE--------------------VKKFI 439 (521)
Q Consensus 383 ~~~~~~~~~~~-~~-~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~~-~~~~~~--------------------~~~~~ 439 (521)
+++.+.+++.+ ++ ++.+++++++|+++|++|+|||+|||+|+++++ +.++++ +.+++
T Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (507)
T PRK08268 245 HAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARLL 324 (507)
T ss_pred HHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHHH
Confidence 99999888764 34 455778999999999999999999999975432 222222 22222
Q ss_pred HHH----------------------------hhccCccCChh-------hh-hhhccC----------------------
Q 009963 440 EKA----------------------------RSMSGVAIDPK-------VL-QSRQLT---------------------- 461 (521)
Q Consensus 440 ~~~----------------------------~~~~~~~~~~~-------~~-~~~~~~---------------------- 461 (521)
... +......|..- +. ..+-..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~ 404 (507)
T PRK08268 325 ERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQD 404 (507)
T ss_pred HhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 100 00000000000 00 000000
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 462 --------LTLRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 462 --------~~~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
-+...|.+|++.+++|||++|+++|+++++||| .+|..|.|||+|||+|+|.+|-.
T Consensus 405 gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGvas~~dID--~a~~~g~G~p~GP~~~~D~~Gld 468 (507)
T PRK08268 405 GKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIASPADID--LAMRLGLNYPLGPLAWGDRLGAA 468 (507)
T ss_pred CCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhcCCCCcCHHHHHHHhCHH
Confidence 046689999999999999999999999999999 99899999999999999999843
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=3.5e-72 Score=550.99 Aligned_cols=280 Identities=38% Similarity=0.679 Sum_probs=270.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.|+||+|||+|+||++||..++.+|++|+++|++++.++++...+.+.+++++++|++++++.+..++++++++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+|||||||++++|+++|++++++++|++||+||||++|++++++.+.+|+||+|+|||||++.|+||||+++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++++.++.+.+||+|++++|+||||+||++.++++||++++.+|+ +|++||.+|+ ++|||||||+++|++|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999996 9999999999 899999999999999999999
Q ss_pred HHhhHHHhhCCCC-Cc-cccHHHHHHHCCCCCccCCceeeeccC
Q 009963 384 ATGMQFIENFPER-TY-KSMIIPIMQEDKRAGETTRKGFYLYDE 425 (521)
Q Consensus 384 ~~~~~~~~~~~~~-~~-~~~~l~~~~~~G~~G~k~g~GfY~y~~ 425 (521)
++++.+++.++++ ++ +++++++|++.|++|+|||+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888733 33 678999999999999999999999975
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-71 Score=502.12 Aligned_cols=281 Identities=36% Similarity=0.566 Sum_probs=266.9
Q ss_pred cccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH-----Hhhhcccccc
Q 009963 144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF-----EKTISLLTGV 218 (521)
Q Consensus 144 ~~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~-----~~~~~~i~~~ 218 (521)
..+++.|+|||+|.||++||+..+.+|++|+++|.|++++.++.+.|.+.+.+..+++..+.... +..+++|+.+
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 35688999999999999999999999999999999999999999999999999998887665443 6678999999
Q ss_pred cCcc-cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEE
Q 009963 219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297 (521)
Q Consensus 219 ~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lvei 297 (521)
++.+ .++++|+||||+.|++++|+++|++|+..+++++|++||||++.+++++..+++|.||.|+|||||+++|+|||+
T Consensus 88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEV 167 (298)
T KOG2304|consen 88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEV 167 (298)
T ss_pred CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhh
Confidence 9875 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhh
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLAD 375 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D 375 (521)
+.++.|+++++..+..+.+.+||++|.++|.||||+||++.||++||+++++.|. +-+|||.+|+ |.|+||||||++|
T Consensus 168 ir~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~D 247 (298)
T KOG2304|consen 168 IRTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELAD 247 (298)
T ss_pred hcCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 9999999999 9999999999999
Q ss_pred hcCchHHHHHhhHHHhhCCCC--CccccHHHHHHHCCCCCccCCceeeecc
Q 009963 376 LVGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (521)
Q Consensus 376 ~~Gld~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~G~~G~k~g~GfY~y~ 424 (521)
.+|||++..+++.|++.+++. +.|+|+++++|++|++|+|+|.|||+|.
T Consensus 248 yvGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 248 YVGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred HhhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 999999999999999999763 4589999999999999999999999994
No 10
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-64 Score=504.50 Aligned_cols=278 Identities=33% Similarity=0.550 Sum_probs=269.3
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.+++++++|.+++.+.+..+++++.++++++++
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 83 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFA 83 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhC-CCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
+||+|||||||++++|+++|+++++.+ ++++|++||||++++++++..+.+|+|++|+|||+|++.++++||+++..|+
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~ 163 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTS 163 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCC
Confidence 999999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchH
Q 009963 305 PQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGV 381 (521)
Q Consensus 305 ~e~~~~~~~l~~-~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~ 381 (521)
+++++.+.+++. .+||+|++++|.|||++||++.++++||++++++|+ +|+|||.+++ ++|||+|||+++|.+|+|+
T Consensus 164 ~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld~ 243 (286)
T PRK07819 164 EATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLDT 243 (286)
T ss_pred HHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccHH
Confidence 999999999988 599999999999999999999999999999999997 9999999998 8999999999999999999
Q ss_pred HHHHhhHHHhhCCCCC-ccccHHHHHHHCCCCCccCCceeeec
Q 009963 382 AIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLY 423 (521)
Q Consensus 382 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~G~~G~k~g~GfY~y 423 (521)
+.++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus 244 ~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 244 VKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999998744 58899999999999999999999998
No 11
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.4e-60 Score=473.58 Aligned_cols=279 Identities=27% Similarity=0.445 Sum_probs=264.4
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcccccccCcc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 223 (521)
+++||+|||+|.||++||..++.+|++|++||++++.++++.+++.+.++...+.+.++.++ .+....+++.+++++ .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 36899999999999999999999999999999999999999999989889888888888776 666778998888886 5
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (521)
+++||+||||+||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCch
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld 380 (521)
++++++.+.++++.+|+.|+++. |.|||++||++.++++||++++++|+ +|+|||.+|+ ++|||||||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 99999999999999999999995 99999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHhhHHHhhCCCCCc--cccHHHHHHHCCCCCccCCceeeecc
Q 009963 381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD 424 (521)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~G~~G~k~g~GfY~y~ 424 (521)
++.++++.+++.++++++ +++++++|+++|++|+|||+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 78999999999999999999999994
No 12
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.4e-59 Score=470.42 Aligned_cols=281 Identities=29% Similarity=0.517 Sum_probs=268.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++||+|||+|.||.+||..|+++|++|++||++++.++.+.+++...++..++.|.++..+.+....+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999998888888888889999988888888899888888 4689
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+||+|||++.++|+.+|+++.+.+++++|++|||||++++++++.+.+|.|++|+|||+|++.++|+|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++.+.++++.+|+.|++++|+|||++||++.++++||++++++|+ +|+|||.+++ ++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHhhHHHhhCCCCCccccHHHHHHHCCCCCccCCceeeeccCCC
Q 009963 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (521)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~ 427 (521)
++.+.+++.+++++.|++++.+|+++|++|+|||+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999898887888999999999999999999999998654
No 13
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.1e-59 Score=465.07 Aligned_cols=277 Identities=35% Similarity=0.610 Sum_probs=267.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++||+|||+|.||.+||..++++|++|+++|++++.++++.+++.+.++...+.|.++..+......+++.+++++.+++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD 82 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 67999999999999999999999999999999999999999999999999999999998888888889988888888999
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ 306 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e 306 (521)
||+|||||||++++|+++|+++.+.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|+++++.|+++
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e 162 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA 162 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHHH
Q 009963 307 VIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA 384 (521)
Q Consensus 307 ~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~ 384 (521)
+++.+.++++.+|+.|++++|+|||++||++.++++||++++++|+ +|+|||.+++ ++|||+|||+++|.+|+|++.+
T Consensus 163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~ 242 (282)
T PRK05808 163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA 242 (282)
T ss_pred HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999997 9999999999 9999999999999999999999
Q ss_pred HhhHHHhhCCCC-CccccHHHHHHHCCCCCccCCceeeec
Q 009963 385 TGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY 423 (521)
Q Consensus 385 ~~~~~~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y 423 (521)
+++.+++.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 999999999874 457889999999999999999999998
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.5e-59 Score=465.78 Aligned_cols=278 Identities=32% Similarity=0.553 Sum_probs=263.5
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+ .++..++.|.+++.+.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 46899999999999999999999999999999999999988887766 366778889888888888888998888887
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ 302 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~ 302 (521)
.+++||+||||+|++.++|+.+|+++++.+++++|++||||+++++++++.+.+|.|++|+|||+|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCch
Q 009963 303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (521)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld 380 (521)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|||||||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHhhHHHhhCCCCC-ccccHHHHHHHCCCCCccC-----Cceeeec
Q 009963 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLY 423 (521)
Q Consensus 381 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~G~~G~k~-----g~GfY~y 423 (521)
++.++++.+++.+++++ .|++++++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999999999998755 4778999999999999999 9999998
No 15
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=2.5e-58 Score=463.09 Aligned_cols=282 Identities=31% Similarity=0.554 Sum_probs=269.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+++||+|||+|.||.+||..|+++|++|++||++++.++.+.+++++.++++++.|.++.++.+..++++.++++++.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999988888888888888888899
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+|||||+|++++|+.+|+++.+.+++++||+||||+++++++++.+.++.+++|+|||+|++.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++.+.++++.+|+.+++++|.+||++||++.++++||++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHhhHHHhhCCCC-CccccHHHHHHHCCCCCccCCceeeeccCCC
Q 009963 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (521)
Q Consensus 384 ~~~~~~~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~ 427 (521)
++++.+++.++++ +.|++++++|+++|++|+|||+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 9999999998874 4578899999999999999999999997654
No 16
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4e-58 Score=460.89 Aligned_cols=281 Identities=32% Similarity=0.528 Sum_probs=267.9
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+++||+|||+|.||.+||..++++|++|++||++++.++++.+++.+.++..++.|.++..+.+..+.+++.++++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 47899999999999999999999999999999999999999999999999889899998888888888999888888899
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcH
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~ 305 (521)
+||+||+||||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHH
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~ 383 (521)
++++.+.++++.+|+.|++++|.|||++||++.++++|+++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 9999999999 999999999999999999999
Q ss_pred HHhhHHHhhCCCC-CccccHHHHHHHCCCCCccCCceeeeccCC
Q 009963 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (521)
Q Consensus 384 ~~~~~~~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~ 426 (521)
++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999988874 457789999999999999999999999653
No 17
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.1e-57 Score=456.59 Aligned_cols=268 Identities=26% Similarity=0.393 Sum_probs=255.4
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--c-ccccCC
Q 009963 158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV 227 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a 227 (521)
||++||..++.+|++|+++|++++ .++++.+++.+.++.++++|.+++++.+..+++|+++++ . +.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 477899999999999999999999999999999998764 2 568999
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV 307 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~ 307 (521)
|+|||||||++++|+.+|+++++.+++++||+||||++++++|++.+.+|+|++|+|||+|++.||+|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhcCchHH
Q 009963 308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA 382 (521)
Q Consensus 308 ~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~Gld~~ 382 (521)
++.+.++++.+||.|++++|.+||++||++.++++|++.++++|+ ++++||.+++ ++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999986 9999999999 99999 699999999999999
Q ss_pred HHHhhHHHhhCCC-CCccccHHHHHHHCCCCCccCCceeeeccC
Q 009963 383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (521)
Q Consensus 383 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~ 425 (521)
.++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998887 556889999999999999999999999964
No 18
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.3e-57 Score=451.74 Aligned_cols=277 Identities=22% Similarity=0.294 Sum_probs=247.5
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.+++||+|||+|+||++||.+|+.+|++|++||++++.++++..++.+.++.+.+.| ++.. ...++++.++++ +.
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence 458899999999999999999999999999999999999999999999998888877 4432 344688888888 45
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (521)
+++||+|||||||++++|+++|+++++.+++++||+||||+++++++++.+.+|+||+|+|||||++.+||||||+++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCeEEEe-cCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhc
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv-~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~ 377 (521)
++++++.+.+|++.+||+||++ +|.||||+|||+.++++||++++++|+ |++|||.+|+ |+|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 599999999999999999999999997 9999999999 99997 9999999999
Q ss_pred CchH-HHHHhhHHHhhCCCC---CccccHHHHHHH------CCCCCccCCceeeeccC
Q 009963 378 GFGV-AIATGMQFIENFPER---TYKSMIIPIMQE------DKRAGETTRKGFYLYDE 425 (521)
Q Consensus 378 Gld~-~~~~~~~~~~~~~~~---~~~~~~l~~~~~------~G~~G~k~g~GfY~y~~ 425 (521)
|+|. ..+.++++.+.+.+. +..+++...|++ ++.+|.++..+||.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9998 344445554443221 223456667776 68999999999999965
No 19
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-57 Score=444.12 Aligned_cols=344 Identities=36% Similarity=0.506 Sum_probs=311.6
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (521)
||++||.++..+|++|++.|.|...++.+..++...+.+.+++++++..+.+....++..+.|+..+++||+|||+|+||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~ 317 (521)
+++|+++|.+|++++++++|++||||++++..+++.+.+|++++|+|||+|++.|+|+||+.+..||..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCcccchhhchHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCC
Q 009963 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (521)
Q Consensus 318 lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~-G~~~~~ID~a~~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~ 396 (521)
.||.|++|++|+||.+||++.+|++++.+++.+ |++|.+||.....|||||||+.+.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999999887 9999999999999999999999999999999888877766555543
Q ss_pred CccccHHHHHHHCCCCCccCCceeeeccCCCCCCCCh-HHHHHHHHHhhccCccCChhhhhhhccCCCHHHHHHHHHHHH
Q 009963 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDP-EVKKFIEKARSMSGVAIDPKVLQSRQLTLTLRLLWAWVFHLT 475 (521)
Q Consensus 397 ~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rll~~~ 475 (521)
+.++|++.|+.|+|||+|||.|+++.++..++ +..+.+.+.. +.+++ +..+++|+++|+++++
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~-----r~~~~ed~v~~~~~p~ 304 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNP-----RVADDEDFVEFLLSPF 304 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCc-----ccCCHHHHHHHHhhHH
Confidence 68899999999999999999999875444444 4444444332 11111 2378999999999999
Q ss_pred HHHHHHHhhccc-cCccccccccccccccCcch---hHHHHHHHHHhh
Q 009963 476 GEESCSGLTLLD-RSTFTHDWRNGQACTGNFLS---HVLSWLKELARE 519 (521)
Q Consensus 476 vnea~~~l~~~~-~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 519 (521)
||||++|++|++ +++.++| .+-.+|.|||. ||+.|.|..|.+
T Consensus 305 VnEal~~l~EGi~~~~~~~D--i~~v~G~gfp~~~GGp~~~~d~~G~~ 350 (380)
T KOG1683|consen 305 VNEALRCLLEGLKASPSDGD--IASVFGLGFPPFRGGPMRFVDLYGAD 350 (380)
T ss_pred HHHHHHHHHHHHhcCccccc--eeeeeccCCCCcCCCceeeeeccChH
Confidence 999999999977 7788999 66678999988 999999887754
No 20
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.9e-49 Score=398.23 Aligned_cols=277 Identities=31% Similarity=0.535 Sum_probs=247.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
+++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+.+......+. ......+++.+++++ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 578999999999999999999999999999999999988877665544333222211 012234566666775 48
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
++||+||+|||++.++|+.+++++.+.+++++|++|+||+++++++++.+.++.+++|+||++|++.++++++++++.++
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhcC
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~G 378 (521)
+++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|. +|++||.+++ ++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999996 78999999999999999999999985 9999999998 99999 79999999999
Q ss_pred chHHHHHhhHHHhhCCCCCccccHHHHHHHCCCCCccCCceeeeccCCC
Q 009963 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (521)
Q Consensus 379 ld~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GfY~y~~~~ 427 (521)
+|++.+++..+++.+++++.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence 9999999999999998887788999999999999999999999997643
No 21
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=9.6e-42 Score=344.45 Aligned_cols=263 Identities=24% Similarity=0.337 Sum_probs=244.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
+|++|+|||+|.||++||..|+++|++|++||++++.++.+..+++..++.+.+.|.++..+....+.++..+++++ .+
T Consensus 1 ~~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred CCcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 36789999999999999999999999999999999999999999999999999999998888888888888888885 57
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
++||+||+|+|++.++|+.+|+++.+.+++++|++||||+++++++++.+.++.++++.|||+|++.++++|++++..|+
T Consensus 81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~ 160 (308)
T PRK06129 81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTA 160 (308)
T ss_pred CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhc-
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV- 377 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~- 377 (521)
+++++.+.++++.+|+++++++ +.+||++||++.++++||+.++++|. |+++||.+++ ++|++ +|||++.|..
T Consensus 161 ~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~ 240 (308)
T PRK06129 161 PATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNA 240 (308)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccc
Confidence 9999999999999999999996 78999999999999999999999885 9999999999 89998 8999999987
Q ss_pred --CchHHHHHhhHHHhhCCCCC-ccccHHHHHHH
Q 009963 378 --GFGVAIATGMQFIENFPERT-YKSMIIPIMQE 408 (521)
Q Consensus 378 --Gld~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 408 (521)
|++........++..+++.. .|+|++++|++
T Consensus 241 ~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~ 274 (308)
T PRK06129 241 PGGVADYAQRYGPMYRRMAAERGQPVPWDGELVA 274 (308)
T ss_pred cccHHHHHHHHHHHHHhhccccCCCchhhHHHHH
Confidence 89999998888888887754 47788888887
No 22
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=3.3e-41 Score=313.00 Aligned_cols=180 Identities=38% Similarity=0.648 Sum_probs=162.0
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
||+|||+|.||++||..++.+|++|++||++++.++.+.+++.+.++..+++|.+++++.+..+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHH
Q 009963 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI 308 (521)
Q Consensus 229 lVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~ 308 (521)
+||||+||++++|+++|++|++.+++++||+||||++++++|++.+.+|+|++|+|||+|++.+|++||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEecCc
Q 009963 309 VDLLDIGKKIKKTPIVVGNC 328 (521)
Q Consensus 309 ~~~~~l~~~lGk~~vvv~d~ 328 (521)
+.+.++++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999874
No 23
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=8.8e-38 Score=333.90 Aligned_cols=242 Identities=23% Similarity=0.323 Sum_probs=204.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
+++||+|||+|+||++||..|+++|++|++||+++++++...+.+....... +.+.... ....++++++++++ .+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY---AMLTDAP-LPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH---hhhccch-hhhhhceEeeCCHHHHh
Confidence 3679999999999999999999999999999999998876443222211111 1111111 11224566777774 68
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~ 304 (521)
++||+|||||||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.++++.|||||++.++|+|+++++.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhhhcC
Q 009963 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (521)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D~~G 378 (521)
+++++.+.++++.+|+.+++++ +.+||++||++.++++||+.|+++|. |+++||++++ ++|++ ||||++.|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 9999999999999999999996 89999999999999999999999875 9999999999 77764 89999999999
Q ss_pred chH-HHHHhhHHHh
Q 009963 379 FGV-AIATGMQFIE 391 (521)
Q Consensus 379 ld~-~~~~~~~~~~ 391 (521)
++. +.+.++++..
T Consensus 239 ~~~g~~~~~~~~~~ 252 (495)
T PRK07531 239 GEAGMRHFLAQFGP 252 (495)
T ss_pred cHHHHHHHHHHhch
Confidence 654 4445555443
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.4e-35 Score=266.92 Aligned_cols=230 Identities=27% Similarity=0.454 Sum_probs=212.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHhhhcccccccCcc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK----GKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
..||+|+|.|..|+++|..|+..||+|.+||+.+++++.+.+.+++.+.++-+. |.++. +..+..|+.+++++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccHH
Confidence 579999999999999999999999999999999999999999999988877664 55664 45678899999985
Q ss_pred -cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCC
Q 009963 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (521)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~ 301 (521)
.++++=.|-|||||++++|+++|+++++.+.|.+|++|+||++.++...+.+.+.++++-.||.||+...||+|+||.+
T Consensus 80 E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaP 159 (313)
T KOG2305|consen 80 ELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAP 159 (313)
T ss_pred HHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEec-CcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHhh
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLAD 375 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p---~GPf~~~D 375 (521)
-|+++++++..++.+.+|..||... +.-||.+||+..+++||..+++..|+ +..|+|.+|. |+|+. .||+|.+.
T Consensus 160 wTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 160 WTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred CCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhh
Confidence 9999999999999999999999886 68899999999999999999999998 9999999999 99976 49999887
Q ss_pred hcCc
Q 009963 376 LVGF 379 (521)
Q Consensus 376 ~~Gl 379 (521)
+.--
T Consensus 240 LNA~ 243 (313)
T KOG2305|consen 240 LNAE 243 (313)
T ss_pred cCcH
Confidence 6543
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.96 E-value=1.9e-29 Score=269.34 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=153.2
Q ss_pred hCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 251 ~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
.+.+++++++.+++.+.+..+....+|+|++|+|||+|++.|+++||+++..|++++++.+.++++.+||.|++++|++|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 45678888888888777787777778999999999999999999999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCC-CCccccHHHHHH
Q 009963 331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ 407 (521)
Q Consensus 331 fi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 407 (521)
||+||++.+++|||++++++|+ +|+|||.+|+ ++|||+|||+|+|.+|+|.++++++.+++.+++ ++.|++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999998 9999999999 999999999999999999999999999999996 556889999999
Q ss_pred HCCCCCccCCceeee
Q 009963 408 EDKRAGETTRKGFYL 422 (521)
Q Consensus 408 ~~G~~G~k~g~GfY~ 422 (521)
++| ..||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 985 66765
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.94 E-value=7.2e-27 Score=195.08 Aligned_cols=94 Identities=40% Similarity=0.635 Sum_probs=87.4
Q ss_pred cchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCCCc-cccHHHHH
Q 009963 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIM 406 (521)
Q Consensus 330 Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~-~~~~l~~~ 406 (521)
|||+||++.++++||++++++|+ +|++||.+++ ++|||+|||+++|.+|+|++.++++.+++.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 9999999999 799999999999999999999999999999998844 68999999
Q ss_pred HHCCCCCccCCceeeec
Q 009963 407 QEDKRAGETTRKGFYLY 423 (521)
Q Consensus 407 ~~~G~~G~k~g~GfY~y 423 (521)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.91 E-value=9.1e-23 Score=217.39 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=112.9
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccH
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP 370 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~-~~~~ID~a~~-~~g~p~GP 370 (521)
..+||+++..|++++++.+.++++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+|+ ++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578999999999999999999999999999999999999999999999999999999998 8999999999 99999999
Q ss_pred HHHhhhcCchHHHHHhhHHHhhCCC-CCccccHHHHHHHCC
Q 009963 371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK 410 (521)
Q Consensus 371 f~~~D~~Gld~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~G 410 (521)
|+|+|.+|+|+++++++.+++.+++ ++.|+++|++|+..|
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g 498 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG 498 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence 9999999999999999999999985 556889999999986
No 28
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.76 E-value=3.1e-17 Score=160.64 Aligned_cols=186 Identities=20% Similarity=0.252 Sum_probs=141.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||.+||.+|.++||+|++||+++++.... ..+.|... ..+..+.+++|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~----------~~~~Ga~~------------a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAEL----------LAAAGATV------------AASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHH----------HHHcCCcc------------cCCHHHHHHhC
Confidence 489999999999999999999999999999999984321 12334321 12234678999
Q ss_pred CEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccCCC------CeE
Q 009963 228 DMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHVM------PLL 295 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~~~------~lv 295 (521)
|+||.|||.+.++...+|. .+.+.+++++++++. ||++++ ++++.+. -.|.+|+ .|+... .-+
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDm-STisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDM-STISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEEC-CCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 9999999999999888884 577788999998754 455554 4555442 2477887 576542 234
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc-ccc---hhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~Gf---i~nRil~~~----~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
.|+.| .+++.++.++++++.+|+.++++++. .|. ++|+++... +.||+.+.+ .|++++.+..+++
T Consensus 134 timvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~ 207 (286)
T COG2084 134 TIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVIS 207 (286)
T ss_pred EEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 44444 38999999999999999999999864 443 678877643 579998886 6999999999998
No 29
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.73 E-value=7.8e-17 Score=161.77 Aligned_cols=187 Identities=17% Similarity=0.296 Sum_probs=137.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
||+|||+|.||.+||..|+++|++|++||+++++++... +.|.. ..++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence 599999999999999999999999999999998876532 23321 1122235678999
Q ss_pred EEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeeccccc-ccC------CCCeEE
Q 009963 229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------VMPLLE 296 (521)
Q Consensus 229 lVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~~-P~~------~~~lve 296 (521)
+||+|+|++..++..++. .+...+++++++++ +|+.++. ++.+.+... |+||+. |+. ....+.
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 999999998888777654 35666788888874 5555543 565555332 566654 322 123345
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-ccc---chhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009963 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (521)
Q Consensus 297 iv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~G---fi~nRil~~~----~~ea~~l~~-~G~~~~~ID~a~~-~~g 365 (521)
++.+ .++++++.+.++++.+|+.++++++ .+| +++|+++... ++|++.+.+ .|++++++.+++. +.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5555 3688999999999999999999975 556 4788888765 789998885 6899999999998 444
No 30
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.70 E-value=8.7e-16 Score=153.11 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=120.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||++||..|.++|++|++||++++.++.+. +.|.++ ..+++.+.+++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence 3799999999999999999999999999999998877643 233322 123344567899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC------------CCCeE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~------------~~~lv 295 (521)
|+||+|+|++.. .++++++.+.+++++++++ +++++...+......+.+|+|+||+.+.. ..+.+
T Consensus 59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIGLL--LPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 999999997754 4678889888888888854 55566665555544556799999986432 24556
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
.+++++.++++.++.+.++++.+|..++.++.
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 68899999999999999999999999998873
No 31
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.70 E-value=9e-16 Score=154.47 Aligned_cols=188 Identities=18% Similarity=0.279 Sum_probs=137.9
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
+++|+|||+|.||..+|..+++.|++|++||++++.++... +.|. ..+.++ +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAGA-------------ETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------eecCCHHHHHh
Confidence 36899999999999999999999999999999998766532 1221 123344 3468
Q ss_pred CCCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeeccccc-ccCC------CC
Q 009963 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MP 293 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~~-P~~~------~~ 293 (521)
+||+||+|+|+...++..++. .+.+.++++++++ ++|+.++. ++++.+... |.||+. |+.. ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence 999999999998887766653 4667788899887 45555543 555554322 667764 3322 13
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccch---hhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K 363 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gfi---~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~~-~ 363 (521)
.++++.+ ++++.++.+.++++.+|+.++++++ .+|+. +|+++.. .++|++.+.+ .|+++++++++++ +
T Consensus 133 ~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3455555 3688999999999999999999975 56764 7776654 4799999886 6889999999997 4
Q ss_pred cC
Q 009963 364 FG 365 (521)
Q Consensus 364 ~g 365 (521)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 43
No 32
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.64 E-value=5.8e-15 Score=152.73 Aligned_cols=171 Identities=21% Similarity=0.228 Sum_probs=124.4
Q ss_pred cceEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 146 ~~~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
.+++|+||| +|.||++||..|..+|++|++||+++.. +. .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~---------------------~~---------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD---------------------RA---------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch---------------------hH---------------HHHH
Confidence 468999999 8999999999999999999999986310 00 1235
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccCCCCeEE--EEeC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve--iv~~ 300 (521)
++||+||+|+|++. ...++.++.+ +++++||++++|+. ++..+..... .+|+|.||++++....+.. ++..
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 68999999999885 4688888888 89999999998863 4566665543 4699999998776543322 4445
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEecC-cccchhhchHH-HH---HHHHHHHHHcCCCHHHH
Q 009963 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRMFF-PY---TQAAFLLVERGTDLYLI 357 (521)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gfi~nRil~-~~---~~ea~~l~~~G~~~~~I 357 (521)
+.++++.++.+.++++.+|..++.++. .++.++..+.. +. +.++..+.+.+.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 567888899999999999999999873 44444333221 22 23444555556665553
No 33
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.63 E-value=1.6e-14 Score=138.94 Aligned_cols=191 Identities=19% Similarity=0.209 Sum_probs=138.6
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
..++||+||.|.||++|+.+|.++||+|++||++.++.+... +.|.-. ..+..+..+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga~v------------~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGARV------------ANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhchhh------------hCCHHHHHh
Confidence 468999999999999999999999999999999999887643 344211 123346689
Q ss_pred CCCEEEEecccchhhHHHHHHH--HHhhCCCCceEEecCCcCcH---HHHHHhhcCCCceeecccc-cccCC------CC
Q 009963 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHV------MP 293 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i---~~ia~~~~~~~r~ig~hf~-~P~~~------~~ 293 (521)
+||+||.+||...+++..++.. +.+.++++......+||+++ .+|+..+.+ .+..|. .|++. ..
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~----~~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN----KGGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh----CCCeEEeccccCCchhhhcC
Confidence 9999999999999998888764 33333444433223455554 377766532 244444 56653 23
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc-cc---chhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-h
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-K 363 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~G---fi~nRil~~~----~~ea~~l~~-~G~~~~~ID~a~~-~ 363 (521)
.+.|+.+ .+++.++.+..+++.+||+.+.++.+ .| -+.|+++.+. +.|++.+.+ .|+++..+-.++. +
T Consensus 167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G 244 (327)
T KOG0409|consen 167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG 244 (327)
T ss_pred eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 4556555 58999999999999999999999852 34 4778877653 578888875 6999999988887 4
Q ss_pred cC
Q 009963 364 FG 365 (521)
Q Consensus 364 ~g 365 (521)
-.
T Consensus 245 ~~ 246 (327)
T KOG0409|consen 245 RC 246 (327)
T ss_pred Cc
Confidence 33
No 34
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.60 E-value=8.8e-14 Score=137.84 Aligned_cols=186 Identities=18% Similarity=0.132 Sum_probs=134.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (521)
+||+|||+|.||.+|+..|.++|+ +|+++ |+++++.+... +.|. ..+.+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g~-------------~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLGV-------------KTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcCC-------------EEeCChH
Confidence 479999999999999999999998 89999 99988765421 1221 122333
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEE-EEeC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT 300 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve-iv~~ 300 (521)
+.+++||+||.|++ +....+++.++.+.++++++++|.+++++++.+....+.. ++++.+|+.|......+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 44679999999996 3346778888887788889888999999999998776543 788888888876554444 5567
Q ss_pred CCCcHHHHHHHHHHHHhcCCeEEEecCc-----ccchh--hchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009963 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (521)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~vvv~d~-----~Gfi~--nRil~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (521)
..++++..+.+++++..+|+ ++++++. -|... ..++ .++.+++. ....|+++++.-.++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~-~~~~~a~~ea~~~~Gl~~~~a~~~~~ 202 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYI-FLAIEALADGGVAAGLPRDVALSLAA 202 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77899999999999999999 7776431 01111 1112 22223221 4457999999888876
No 35
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.56 E-value=2.8e-14 Score=130.69 Aligned_cols=146 Identities=20% Similarity=0.234 Sum_probs=101.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
|+||+|||.|.||+.||.+|+++|++|++||++++++++.. +.| .....+. +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhh-------------hhhhhhhhhHhh
Confidence 57999999999999999999999999999999999887643 222 2234444 4578
Q ss_pred CCCEEEEecccchhhHHHHHHH--HHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccC-------CC
Q 009963 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH-------VM 292 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~-------~~ 292 (521)
+||+||.|+|.+.+++ +++.. +.+.+.++.+++ ++||.+++ ++++.+.. .|.||. .|+. ..
T Consensus 57 ~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g 130 (163)
T PF03446_consen 57 QADVVILCVPDDDAVE-AVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG 130 (163)
T ss_dssp HBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred cccceEeecccchhhh-hhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence 8999999999887764 55555 778888998886 45566554 44444421 245555 3432 35
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEe
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv 325 (521)
.+.-++.| ++++++.++++++.+|+..+++
T Consensus 131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp TEEEEEES----HHHHHHHHHHHHHHEEEEEEE
T ss_pred ceEEEccC---CHHHHHHHHHHHHHHhCCceee
Confidence 66777777 6889999999999999988743
No 36
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.55 E-value=2.4e-13 Score=136.70 Aligned_cols=183 Identities=18% Similarity=0.212 Sum_probs=128.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||.+||..|+++|++|++||+++++++... +.|. ..+.+. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence 5899999999999999999999999999999998876532 2221 122333 45789
Q ss_pred CCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccCC-------CC
Q 009963 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~~-------~~ 293 (521)
||+||.|+|++..++..++. .+.+.++++++++ ++||.++. +++..+.. .|.+|. .|+.. ..
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~----~g~~~ldapV~g~~~~a~~g~ 132 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQA----KGFSMMDVPVGRTSDNAITGT 132 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEccCCCCHHHHHhCc
Confidence 99999999998777655543 3555677888775 56666654 44444422 133333 34322 33
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc-cc---chhhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~G---fi~nRil~----~~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++.++.+ +++.++.++++++.+|+..+++++. .| .++|.++. ..+.|++.+.+ .|++++.+-.++.
T Consensus 133 l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 133 LLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred EEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 4444444 7889999999999999999998852 23 24555443 34689988875 6999999877776
No 37
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.54 E-value=1.2e-13 Score=142.43 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=125.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||++||..|.++|++|.+|+++++..+... ....|..+ ..++++ +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~---------a~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR---------ALGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---------HhcCCCCc-----------ccccCHHHHhcC
Confidence 4799999999999999999999999999999877544321 01122211 112333 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHh-hCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccC------------C
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V 291 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~------------~ 291 (521)
||+||.|||.+ ....++.++.+ .+++++|+++.+|+. .++.+...+.+..+|+|.||+...+ .
T Consensus 61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 99999999986 45788899887 478888887766653 2345555445677899999975321 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec-CcccchhhchHH--HHHHHHH
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFF--PYTQAAF 345 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil~--~~~~ea~ 345 (521)
.....+++++.++++.++.+.++++.+|..++.+. +.+..++..+.. .++.+++
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH
Confidence 33456788888999999999999999999999886 345555554432 3445444
No 38
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.54 E-value=6.1e-13 Score=131.73 Aligned_cols=189 Identities=16% Similarity=0.173 Sum_probs=137.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
+||+|||+|.||.+|+..|.++|+ +|+++|+++++++...+. .| +..+.+. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 479999999999999999999885 699999999887653210 12 1122333 4
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEE-eCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTN 301 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv-~~~ 301 (521)
.+.+||+||.||+. ..-.++++++.+.++++++++|...+++++.|...++.+.+++...|+.|+.....+..+ +++
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 46899999999985 355788888888888899999999999999999988666689999999998877666654 677
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecCc--ccc-hhhc---hHHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-AVNR---MFFPYTQAAF--LLVERGTDLYLIDRAIT 362 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d~--~Gf-i~nR---il~~~~~ea~--~l~~~G~~~~~ID~a~~ 362 (521)
..+++..+.+.++|..+|+.. ++.+. ..+ .+.- -+..++.|++ ..++.|++.++-.....
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~-~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTE-VVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAA 205 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEE-EEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 788888999999999999974 44421 000 0000 0112233443 23456777777666554
No 39
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.53 E-value=2e-14 Score=160.30 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHH
Q 009963 310 DLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAI 383 (521)
Q Consensus 310 ~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~ 383 (521)
.+.+++..+|+.++.+.+.+|||+||++.+++|||++++++|+ +|+|||.+|+ |+|||+ |||+++|.+|+|.++
T Consensus 626 ~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~ 705 (737)
T TIGR02441 626 DADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV 705 (737)
T ss_pred HHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence 3455667778877766778999999999999999999999997 9999999999 999996 999999999999999
Q ss_pred HHhhHHHhhCCCCCccccHHHHHHHC-C
Q 009963 384 ATGMQFIENFPERTYKSMIIPIMQED-K 410 (521)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~-G 410 (521)
++++.+++.+++++.|++++.+|+++ |
T Consensus 706 ~~~~~l~~~~g~~~~p~~lL~~~~~~~g 733 (737)
T TIGR02441 706 DKMEKYAAAYGVQFTPCQLLLDHAKSPG 733 (737)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHhcC
Confidence 99999999999888899999999987 5
No 40
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.52 E-value=8.4e-13 Score=130.87 Aligned_cols=188 Identities=18% Similarity=0.172 Sum_probs=133.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
+++|+|||+|.||..|+..+.++| ++|.++|++++..+...+. .| +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YG-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cC-------------CeecCChHH
Confidence 468999999999999999999999 7899999999876653221 01 1122333 3
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEE-EEeCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN 301 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve-iv~~~ 301 (521)
.+.+||+||.|+|.. .-.++++++.+.+ +++|+|.+++++.+.+...+++..+++.+||+.|......+. ++++.
T Consensus 59 ~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 467899999999754 3457777777665 467888999999999988776667899999998876655454 56777
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecC-cc-cch-hh----chHHHHHHHHH-HH-HHcCCCHHHHHHHHH
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGN-CT-GFA-VN----RMFFPYTQAAF-LL-VERGTDLYLIDRAIT 362 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d-~~-Gfi-~n----Ril~~~~~ea~-~l-~~~G~~~~~ID~a~~ 362 (521)
.++++..+.+..+++.+|..+++..+ .. ... .. -++.. +.+++ .. ...|+++++-...+.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~-~~~~~~~~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFL-FIEALADAGVKLGLPREQARKLAA 203 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88999999999999999975544322 11 111 11 12222 33333 33 357888888766665
No 41
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.51 E-value=5.1e-13 Score=133.89 Aligned_cols=182 Identities=20% Similarity=0.216 Sum_probs=129.6
Q ss_pred EEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEE
Q 009963 152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV 230 (521)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 230 (521)
|||+|.||.+||..|+++|++|++||+++++.+... +.|. ..+.+. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998876532 2221 123333 457899999
Q ss_pred EEecccchhhHHHHH--HHHHhhCCCCceEEecCCcCcHHH---HHHhhcCCCceeecccc-cccCC-------CCeEEE
Q 009963 231 IEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFF-SPAHV-------MPLLEI 297 (521)
Q Consensus 231 Ieav~e~~~~k~~v~--~~l~~~~~~~~il~sntS~l~i~~---ia~~~~~~~r~ig~hf~-~P~~~-------~~lvei 297 (521)
|.|||.+..++..++ ..+.+.+++++++++ +||++++. +++.+.. .|.+|. .|+.. ..+..+
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~ 131 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFM 131 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEE
Confidence 999998766644433 567777788888764 45776653 3333321 255554 34432 345555
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gf---i~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~~-~~g 365 (521)
+.| +++.++.+.+++..+|+.++++++ ..|. ++|+++.. .++|++.+.+ .|++++++..++. +.|
T Consensus 132 ~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 132 VGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred ECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 555 578899999999999999999986 4454 56665543 3689998875 6899999999998 544
No 42
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.51 E-value=7.4e-13 Score=132.09 Aligned_cols=189 Identities=15% Similarity=0.171 Sum_probs=133.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.+||+|||+|.||.+|+..|.++| ++|+++|++++ .++.... ..| +..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence 469999999999999999999998 78999999764 4333211 012 1123333
Q ss_pred -ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCC-CeEEEEe
Q 009963 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-PLLEIVR 299 (521)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~-~lveiv~ 299 (521)
+.+.+||+||.||+.+. -.+++.++.+.+.++++|+|..++++++.+...+.+..++++.||+.|.... .+.-+++
T Consensus 60 ~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 44689999999998654 3466688887788889999988999999998877655679999998776553 3444557
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecCc--c---cchh--hchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d~--~---Gfi~--nRil~~~~~ea~~--l~~~G~~~~~ID~a~~ 362 (521)
++..+++..+.+++++..+|+.. ++.+. . |... ..+ ..++.|++. ....|+++++.-.++.
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~~ 207 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLIL 207 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77788999999999999999854 43321 1 1110 011 223344433 3467899888888776
No 43
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.50 E-value=1.2e-12 Score=130.44 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=111.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.||+++|..|.++|+ +|++||++++.++.+. +.|..+ ...+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~ 57 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELK 57 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHh
Confidence 379999999999999999999996 7899999998776532 233221 122333455
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhc--CCCceeeccccc------ccC------C
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY--SKDRIVGAHFFS------PAH------V 291 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~--~~~r~ig~hf~~------P~~------~ 291 (521)
+||+||.|+|.+. ..+++.++.+ ++++++|++.+|+. ..+...+. .+.+|++.||+. |.. .
T Consensus 58 ~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k--~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~ 132 (275)
T PRK08507 58 KCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTK--AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYE 132 (275)
T ss_pred cCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccch--HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhC
Confidence 6999999999764 3467788888 88899888765543 22222221 235799999985 322 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
...+.+++.+.++++.++.+.++++.+|..++.++.
T Consensus 133 g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 133 GKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 346677788888899999999999999999999873
No 44
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.49 E-value=1.1e-12 Score=131.51 Aligned_cols=185 Identities=15% Similarity=0.179 Sum_probs=125.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
||+|||+|.||.+||..|.++|++|++||+++. .+.. .+.|.. ...+..+.+++||
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~~------------~~~s~~~~~~~ad 57 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGAV------------SVETARQVTEASD 57 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCCe------------ecCCHHHHHhcCC
Confidence 799999999999999999999999999999874 2321 122321 1122234568999
Q ss_pred EEEEecccchhhHHHHHHH--HHhhCCCCceEEecCCcCcHH---HHHHhh-cCCCceeecccccc----cCCCCeEEEE
Q 009963 229 MVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERT-YSKDRIVGAHFFSP----AHVMPLLEIV 298 (521)
Q Consensus 229 lVIeav~e~~~~k~~v~~~--l~~~~~~~~il~sntS~l~i~---~ia~~~-~~~~r~ig~hf~~P----~~~~~lveiv 298 (521)
+||.|||.+..++..++.. +.+.+.++.+++. +||+++. ++++.+ .+..+|+. +|+.. +....|.-++
T Consensus 58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~ 135 (292)
T PRK15059 58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV 135 (292)
T ss_pred EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence 9999999987776665542 4555677887764 5566654 444444 23334444 23321 1223445455
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCeEEEecCc-ccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~Gf---i~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
.| +++.++.++++++.+|+..+++++. .|. ++|+++.. .+.|++.+.+ .|++++.+-.++.
T Consensus 136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~ 205 (292)
T PRK15059 136 GG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALM 205 (292)
T ss_pred cC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44 7889999999999999999999863 332 45555543 3688888875 6899998777776
No 45
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.48 E-value=1.7e-12 Score=136.94 Aligned_cols=162 Identities=19% Similarity=0.148 Sum_probs=122.2
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
+||+||| +|.||.++|..|..+|++|+++|++++....... +.|. ..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~gv-------------~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELGV-------------EYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcCC-------------eeccCHHHHhc
Confidence 4899998 7999999999999999999999999876533211 1121 123333 4578
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhcCCCceeecccccc----cCCCCeEEEEe
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSP----AHVMPLLEIVR 299 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~~~~r~ig~hf~~P----~~~~~lveiv~ 299 (521)
+||+||.|+|.+. ...++.++.+.+++++++++.+|+ .+++.+...++...+|++.||+.. ......+.+++
T Consensus 58 ~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 9999999999753 357889998889999999988874 345566666555568999998743 23456777888
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecC-cccchhh
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVN 334 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d-~~Gfi~n 334 (521)
++.++++.++.+.+++..+|..++.+.. .+..++.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~a 171 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMS 171 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHH
Confidence 8888899999999999999999988763 3444433
No 46
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.46 E-value=3.5e-12 Score=135.08 Aligned_cols=190 Identities=15% Similarity=0.223 Sum_probs=129.2
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (521)
.+++|||||+|.||.+||.+|+++|++|++||+++++.+...+.. ...|.. .+....+.++
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence 356899999999999999999999999999999999887643210 001210 1112233332
Q ss_pred --ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccC-------
Q 009963 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH------- 290 (521)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~------- 290 (521)
++.||+||.|||.+..+. +++..+.+.+.++.|+++. |+.+.. ++++.+.. .|.||+ .|+.
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~-~Vi~gl~~~l~~G~iiID~-sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~ 141 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVD-QTIKALSEYMEPGDCIIDG-GNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGAR 141 (493)
T ss_pred hcCCCCCEEEEECCCcHHHH-HHHHHHHhhcCCCCEEEEC-CCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhc
Confidence 345999999999888765 4557788888888888754 344332 44444421 256665 3443
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCC------eEEEecC-cccc---hhhc-hHHH---HHHHHHHHHHc--CCCH
Q 009963 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKK------TPIVVGN-CTGF---AVNR-MFFP---YTQAAFLLVER--GTDL 354 (521)
Q Consensus 291 ~~~lveiv~~~~t~~e~~~~~~~l~~~lGk------~~vvv~d-~~Gf---i~nR-il~~---~~~ea~~l~~~--G~~~ 354 (521)
..+ .+++| .++++++.++++++.++. ..+++++ ..|. ++|+ +... .+.|++.+.+. |+++
T Consensus 142 ~G~--~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~ 217 (493)
T PLN02350 142 NGP--SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN 217 (493)
T ss_pred CCC--eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 234 34555 378899999999999985 4778885 3343 3444 4443 36899988864 8899
Q ss_pred HHHHHHHH
Q 009963 355 YLIDRAIT 362 (521)
Q Consensus 355 ~~ID~a~~ 362 (521)
+++-.++.
T Consensus 218 ~~l~~vf~ 225 (493)
T PLN02350 218 EELAEVFA 225 (493)
T ss_pred HHHHHHHH
Confidence 99998865
No 47
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.46 E-value=3.2e-12 Score=126.16 Aligned_cols=167 Identities=17% Similarity=0.192 Sum_probs=122.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 222 (521)
.++|+|+|+|.||++||..+..+|+.|.+++++... ++.+ .+.|..+. .+.+ .+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d~-----------~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVIDE-----------LTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCcccc-----------cccchhhh
Confidence 468999999999999999999999988777666543 3332 12343321 1122 35
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccC------CCCe
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------VMPL 294 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~------~~~l 294 (521)
.+.++|+||.|||-.. -..+++++.+.+++++||++.+|+. +++.+....+...+|+|.||+..++ ....
T Consensus 61 ~~~~aD~VivavPi~~--~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVPIEA--TEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEeccHHH--HHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 6788999999999664 4588899999999999999999976 3445555443222899999997662 2345
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec-CcccchhhchH
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMF 337 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRil 337 (521)
+.+++++.++.+.+..+.++++.+|..++.+. +.+..+...+.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vs 182 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVS 182 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHH
Confidence 66788888899999999999999998888886 34444444333
No 48
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.45 E-value=2.6e-12 Score=135.92 Aligned_cols=189 Identities=15% Similarity=0.159 Sum_probs=131.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (521)
.+|+|||+|.||.+||..|+++|++|++||+++++.+...+.. ...|. .+..+.++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 4799999999999999999999999999999999987654210 00121 1223444433
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhcCCCceeecccc-cccCC-------CC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~~~~r~ig~hf~-~P~~~-------~~ 293 (521)
+.++|+||.+|+....+ ..++.++.+.+.++.||++.+++.+.+ .....+. --|.||+ .|+.. .+
T Consensus 64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence 23699999999887665 456688888899999988766655443 2333331 1266666 35432 34
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCe------EEEecC-cccc----hhhchHHH---HHHHHHHHHH--cCCCHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF----AVNRMFFP---YTQAAFLLVE--RGTDLYLI 357 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~------~vvv~d-~~Gf----i~nRil~~---~~~ea~~l~~--~G~~~~~I 357 (521)
. +++| .++++++.++++++.++.. ..++++ ..|. +.|-+... .+.|++.+++ .|++++++
T Consensus 139 -~-lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l 214 (470)
T PTZ00142 139 -S-LMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEEL 214 (470)
T ss_pred -E-EEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 3 4444 3788999999999999977 577775 3443 33445444 3689999985 68899999
Q ss_pred HHHHHh
Q 009963 358 DRAITK 363 (521)
Q Consensus 358 D~a~~~ 363 (521)
-.++..
T Consensus 215 ~~v~~~ 220 (470)
T PTZ00142 215 SEVFNK 220 (470)
T ss_pred HHHHHH
Confidence 888863
No 49
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.44 E-value=2.9e-12 Score=129.63 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=114.8
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
.+++|+|||+|.||.++|..|.++|+ +|++||++++.++.+. +.|... ..+.+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHH
Confidence 35799999999999999999999995 8999999998766542 223211 112233 4
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccCC---------
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHV--------- 291 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~~--------- 291 (521)
.+++||+||.|+|... ...++.++.+.+++++++++.+|.- .+..+........+|++.||+.+.+.
T Consensus 63 ~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 5789999999999753 4677888888888898886655432 12334444444458999999975331
Q ss_pred ---CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 292 ---~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
...+.+++...++++.++.+.++++.+|..++++.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345777777889999999999999999999886
No 50
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.43 E-value=3.1e-14 Score=149.56 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=118.7
Q ss_pred eEEEEEeCChhhHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~--~l----a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.||+|||+|.||.+.+. .+ +.+|++|++||++++.++.....+.+.+. ... ...++..++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~--------~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELG--------APLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcC--------CCeEEEEeCCH
Confidence 37999999999998665 23 45688999999999998876655533322 111 11467778885
Q ss_pred -ccccCCCEEEEecc----------cchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcC--CCceeecccccc
Q 009963 222 -ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSP 288 (521)
Q Consensus 222 -~~~~~aDlVIeav~----------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~--~~r~ig~hf~~P 288 (521)
+++++||+||++++ |+..+|..+++++.+.+++++++.+++|...+.+++..+.+ | +.+.+||+||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 67899999999998 45889999999999999999999999999999999988764 7 8999999999
Q ss_pred cCCC-----CeEE--EEeCCCCcHHHHHHHHHHHHhcCCe
Q 009963 289 AHVM-----PLLE--IVRTNQTSPQVIVDLLDIGKKIKKT 321 (521)
Q Consensus 289 ~~~~-----~lve--iv~~~~t~~e~~~~~~~l~~~lGk~ 321 (521)
+..+ +... ++... .........+.+.+|..
T Consensus 148 v~i~t~~~~k~~~~rviG~c---~~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 148 MAELTWALNRYTPIKTVGLC---HGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHHhCCCCEEEEC---CcHHHHHHHHHHHhCCC
Confidence 8754 2222 33222 22455566666777763
No 51
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.42 E-value=1.3e-11 Score=124.28 Aligned_cols=189 Identities=9% Similarity=0.063 Sum_probs=124.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||.+||..|+++|++|.+||+++++++... +.|..... ...+. +.+.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~-----------~~g~~~~~----------s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMK-----------EDRTTGVA----------NLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCcccC----------CHHHHHhhcCC
Confidence 3799999999999999999999999999999999876643 12211100 00011 23567
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH--HHHHHhh-cCCCceeecccccccC--CCCeEEEEeCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT-YSKDRIVGAHFFSPAH--VMPLLEIVRTN 301 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i--~~ia~~~-~~~~r~ig~hf~~P~~--~~~lveiv~~~ 301 (521)
+|+||.|||.+ . -+.++.++.+.++++.++++.+++.+. .++...+ .+..+|+..+...++. ...+.-++.|
T Consensus 60 ~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG- 136 (298)
T TIGR00872 60 PRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG- 136 (298)
T ss_pred CCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC-
Confidence 99999999987 4 467778888888888888765554433 2333333 2223344443322111 1123334444
Q ss_pred CCcHHHHHHHHHHHHhcCC---eEEEecCc-ccc----hhhchHHH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 009963 302 QTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF----AVNRMFFP---YTQAAFLLVER-G--TDLYLIDRAIT 362 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk---~~vvv~d~-~Gf----i~nRil~~---~~~ea~~l~~~-G--~~~~~ID~a~~ 362 (521)
+++.++.+.++++.++. ..+++++. .|. +.|-+... .+.|++.+++. | ++++++-.+|+
T Consensus 137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 78899999999999986 46778752 332 23444443 35789998875 4 59999999987
No 52
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.41 E-value=1.9e-11 Score=123.35 Aligned_cols=183 Identities=18% Similarity=0.167 Sum_probs=124.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (521)
++|+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ....+.++ ++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~ 56 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAK 56 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhh
Confidence 3799999999999999999999999999999998876532 2221 11223322 22
Q ss_pred --CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcCCCceeecccc-cccCC------CCe
Q 009963 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFF-SPAHV------MPL 294 (521)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~-~P~~~------~~l 294 (521)
++|+||.++|.+..+ ..++..+...++++.++++.+++.+ ..+++..+.. .|.+|. .|+.. ..+
T Consensus 57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~ 131 (301)
T PRK09599 57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY 131 (301)
T ss_pred cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC
Confidence 479999999987554 4556777777888887765433332 2234444322 255554 34332 123
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCC----eEEEecCc-ccc---hhhc-hHHHH---HHHHHHHHH---cCCCHHHHHH
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGNC-TGF---AVNR-MFFPY---TQAAFLLVE---RGTDLYLIDR 359 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk----~~vvv~d~-~Gf---i~nR-il~~~---~~ea~~l~~---~G~~~~~ID~ 359 (521)
.++.+ .++++++.++++++.+++ ..+++++. .|. ++|+ +.... +.|++.+.+ .|++++++-.
T Consensus 132 -~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~ 208 (301)
T PRK09599 132 -CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAE 208 (301)
T ss_pred -eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34444 378899999999999998 78888862 332 3444 33332 578998886 5789999999
Q ss_pred HHH
Q 009963 360 AIT 362 (521)
Q Consensus 360 a~~ 362 (521)
+++
T Consensus 209 ~~~ 211 (301)
T PRK09599 209 VWR 211 (301)
T ss_pred HHh
Confidence 988
No 53
>PLN02256 arogenate dehydrogenase
Probab=99.40 E-value=7.1e-12 Score=125.83 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=111.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (521)
.++|+|||+|.||+++|..|.+.|++|+++|+++.. +.+. +.|. ....+.++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence 368999999999999999999999999999998632 2111 1121 11233333 3
Q ss_pred cCCCEEEEecccchhhHHHHHHHH-HhhCCCCceEEecCCc--CcHHHHHHhhcCCCceeecccccccCCC------CeE
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL 295 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l-~~~~~~~~il~sntS~--l~i~~ia~~~~~~~r~ig~hf~~P~~~~------~lv 295 (521)
.+||+||.|+|.. .-.+++.++ ...+++++++++.+|+ .+++.+...++...+|+|.||+.+++.. .-+
T Consensus 91 ~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 4699999999865 346777777 5667899999998884 5567777766555579999999877542 111
Q ss_pred EEEeC----CCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 296 eiv~~----~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
.+.+. +.++++.++.+.++++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 12221 56788899999999999999999886
No 54
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.40 E-value=9.3e-12 Score=130.99 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=130.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR----ANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (521)
+||+|||+|.||..+|..|+++|++|++||++++.++...+... ..++..+.+. ...++++.+++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYED 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHH
Confidence 47999999999999999999999999999999998876432100 0000000000 0013355666664
Q ss_pred cccCCCEEEEecccchh--------hHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHH-hhcC--CCc-eeecc-cc
Q 009963 223 SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGE-RTYS--KDR-IVGAH-FF 286 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~-~~~~--~~r-~ig~h-f~ 286 (521)
.+++||+||.|||.... ....+.+.+.+.++++++++. +||+++. ++.. .+.+ ..+ ....+ -+
T Consensus 73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~ 151 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAY 151 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEE
Confidence 48899999999997642 234556778888888887764 5666543 3432 2211 000 11111 11
Q ss_pred cccCCCC--e-------EEEEeCCCCcHHHHHHHHHHHHhcC-CeEEEecCc-cc---chhhchH----HHHHHHHHHHH
Q 009963 287 SPAHVMP--L-------LEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQAAFLLV 348 (521)
Q Consensus 287 ~P~~~~~--l-------veiv~~~~t~~e~~~~~~~l~~~lG-k~~vvv~d~-~G---fi~nRil----~~~~~ea~~l~ 348 (521)
+|....+ + -.++.| .+++..+.+.+++..++ +.++++++. .+ -++++++ .+++||+..+.
T Consensus 152 ~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 152 NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3432211 1 134555 47889999999999998 577777652 22 2344444 35689999888
Q ss_pred H-cCCCHHHHHHHHH
Q 009963 349 E-RGTDLYLIDRAIT 362 (521)
Q Consensus 349 ~-~G~~~~~ID~a~~ 362 (521)
+ .|++++++-.++.
T Consensus 230 ~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 230 EALGIDVYEVIEAAG 244 (411)
T ss_pred HHhCCCHHHHHHHhC
Confidence 6 6999999988886
No 55
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.39 E-value=5.4e-13 Score=148.81 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=82.7
Q ss_pred CcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccc
Q 009963 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (521)
Q Consensus 327 d~~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 400 (521)
..+|||+||++.+++|||++++++|+ +++|||.+|+ |+|||+ |||+++|.+|+|.++++++.++..+++++.|+
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~ 692 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPC 692 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCC
Confidence 36899999999999999999999996 9999999999 999997 99999999999999999999999999988899
Q ss_pred cHHHHHHHCCCCCccCCceee
Q 009963 401 MIIPIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 401 ~~l~~~~~~G~~G~k~g~GfY 421 (521)
+++.+|+++| ++||
T Consensus 693 ~~l~~~~~~~-------~~f~ 706 (708)
T PRK11154 693 ERLVEMAERG-------ESFY 706 (708)
T ss_pred HHHHHHHHcC-------CCCC
Confidence 9999999985 6786
No 56
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.38 E-value=7.1e-13 Score=147.53 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=82.1
Q ss_pred CcccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccc
Q 009963 327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS 400 (521)
Q Consensus 327 d~~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~ 400 (521)
..+||++||++.+++|||++++++|+ +|+|||.+|+ ++|||+ |||+++|.+|+|.++++++.++..+++++.|+
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~ 685 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPC 685 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCC
Confidence 36899999999999999999999996 9999999999 999995 99999999999999999999999999988899
Q ss_pred cHHHHHHHCCCCCccCCceee
Q 009963 401 MIIPIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 401 ~~l~~~~~~G~~G~k~g~GfY 421 (521)
+++.+|+++| +.||
T Consensus 686 ~~L~~~~~~~-------~~f~ 699 (699)
T TIGR02440 686 QRLVAMAAEK-------QSFY 699 (699)
T ss_pred HHHHHHHHcC-------CCcC
Confidence 9999999985 6676
No 57
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.37 E-value=3.1e-11 Score=121.62 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=122.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK- 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 225 (521)
++|+|||+|.||..||..|+++|++|++||+++++.+... +.|. ..+.+.++ ++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 56 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSK 56 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHh
Confidence 3799999999999999999999999999999998766532 1221 12233333 33
Q ss_pred --CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH---HHHHHhhcCCCceeecccc-cccCC------CC
Q 009963 226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHV------MP 293 (521)
Q Consensus 226 --~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i---~~ia~~~~~~~r~ig~hf~-~P~~~------~~ 293 (521)
++|+||.|+|.+..+ +.++..+.+.++++.+++.. |+.++ .++++.+.. .|.+|. .|+.. ..
T Consensus 57 ~~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~-st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g 130 (299)
T PRK12490 57 LEAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDG-GNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNG 130 (299)
T ss_pred CCCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEEC-CCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcC
Confidence 379999999987555 45567777778888877644 33333 344444422 144554 23322 12
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCC---eEEEecCc-ccc---hhhchHH-H---HHHHHHHHHH-cC--CCHHHHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMFF-P---YTQAAFLLVE-RG--TDLYLIDR 359 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk---~~vvv~d~-~Gf---i~nRil~-~---~~~ea~~l~~-~G--~~~~~ID~ 359 (521)
..-++.| ++++++.++++++.+|. ..+++++. .|. ++|+++. . .+.|++.+.+ .| ++++++-+
T Consensus 131 ~~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~ 207 (299)
T PRK12490 131 YCLMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVAR 207 (299)
T ss_pred CeEEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence 2333444 68899999999999997 67888752 232 4454443 2 3689999886 56 78888888
Q ss_pred HHH
Q 009963 360 AIT 362 (521)
Q Consensus 360 a~~ 362 (521)
++.
T Consensus 208 ~~~ 210 (299)
T PRK12490 208 LWR 210 (299)
T ss_pred HHc
Confidence 887
No 58
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.36 E-value=1.5e-11 Score=119.65 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=122.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YE 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~ 222 (521)
+||+|||+|+||.+|+..|.++| .+|++.|++++..+...++ -|. .. +++ .+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------~g~------------~~-~~~~~~ 58 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------YGV------------VT-TTDNQE 58 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------cCC------------cc-cCcHHH
Confidence 68999999999999999999999 5899999999987632211 111 11 333 35
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEE-eCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTN 301 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv-~~~ 301 (521)
.+.++|+||.||.. ..-.+++.++.. ..++.+++|...+++++.+...++ ..+++...|+.|+.+...+..+ .+.
T Consensus 59 ~~~~advv~LavKP--q~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVKP--QDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeCh--HhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 67889999999953 455688888887 778999999999999999999987 6789999999998877666655 567
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEe
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVV 325 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv 325 (521)
..+++..+.+.+++..+|+...+-
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEec
Confidence 889999999999999999876654
No 59
>PLN02858 fructose-bisphosphate aldolase
Probab=99.36 E-value=2e-11 Score=143.96 Aligned_cols=186 Identities=16% Similarity=0.130 Sum_probs=134.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||+|.||.+||.+|+++|++|++||+++++.+... +.|.. ...+. +.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGGH-------------RCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCCe-------------ecCCHHHHHhc
Confidence 5899999999999999999999999999999998877643 23321 12333 45678
Q ss_pred CCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceee--cccc-cccC-------C
Q 009963 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG--AHFF-SPAH-------V 291 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig--~hf~-~P~~-------~ 291 (521)
||+||.|+|.+..++..++. .+.+.+.++.+++ ++||++++ ++++.+.. .| .+|. .|+. .
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~ 135 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLN 135 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhc
Confidence 99999999999888766653 4666677888776 45666665 44444422 24 4554 3443 3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEe-cC-cccc---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHH
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI 361 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv-~d-~~Gf---i~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~ 361 (521)
..|.-++.| +++.++.++++++.+|+..+++ ++ ..|. ++|+++.. .+.||+.+.+ .|++++.+-.++
T Consensus 136 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl 212 (1378)
T PLN02858 136 GKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDII 212 (1378)
T ss_pred CCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 456666666 6888999999999999988765 54 3343 55665543 3689998875 799999999998
Q ss_pred H-hcC
Q 009963 362 T-KFG 365 (521)
Q Consensus 362 ~-~~g 365 (521)
. +.|
T Consensus 213 ~~s~g 217 (1378)
T PLN02858 213 SNAAG 217 (1378)
T ss_pred hcCCc
Confidence 8 554
No 60
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.36 E-value=5.5e-12 Score=130.91 Aligned_cols=199 Identities=17% Similarity=0.225 Sum_probs=119.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||+|||+|.||.++|..++. |++|++||+++++++...+.+...++..++. .......+++.+++. +.+++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~ 73 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRD 73 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcC
Confidence 379999999999999988875 9999999999999888664322111111110 000112244445554 45789
Q ss_pred CCEEEEecccchhhH---------HHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccccccCCCC-
Q 009963 227 VDMVIEAIIENVSLK---------QQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHVMP- 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k---------~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~~P~~~~~- 293 (521)
||+||+|||++.+.| .++.+.+.+ ++++.+++ ..||+++. ++...+. + .++.| +|....+
T Consensus 74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~--~--~~v~~-~PE~l~~G 146 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYR--T--ENIIF-SPEFLREG 146 (388)
T ss_pred CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhh--c--CcEEE-CcccccCC
Confidence 999999999885433 344566766 57777765 45666654 4443321 1 13333 5543221
Q ss_pred -e-------EEEEeCCCCcHHHHHHHHHHHHh--cCC-eEEEecCc-ccc---hhhchHH----HHHHHHHHHHH-cCCC
Q 009963 294 -L-------LEIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGTD 353 (521)
Q Consensus 294 -l-------veiv~~~~t~~e~~~~~~~l~~~--lGk-~~vvv~d~-~Gf---i~nRil~----~~~~ea~~l~~-~G~~ 353 (521)
+ -.++.|. +++..+.+.+++.. ++. .++++.+. .+. ++++.+. +++||...+.+ .|++
T Consensus 147 ~a~~d~~~p~rvv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD 224 (388)
T PRK15057 147 KALYDNLHPSRIVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLN 224 (388)
T ss_pred cccccccCCCEEEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 1 0233332 34556677777744 454 34345542 222 3444433 56899998875 6999
Q ss_pred HHHHHHHHH
Q 009963 354 LYLIDRAIT 362 (521)
Q Consensus 354 ~~~ID~a~~ 362 (521)
+.++-.++.
T Consensus 225 ~~eV~~a~~ 233 (388)
T PRK15057 225 TRQIIEGVC 233 (388)
T ss_pred HHHHHHHhc
Confidence 999888884
No 61
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.35 E-value=4e-11 Score=125.92 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=126.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (521)
++||+|||+|.||.++|..|+++|++|++||+++++++..... +...+.+.++.| ++..+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g------------~l~~~ 70 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG------------YLRAT 70 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC------------ceeee
Confidence 5799999999999999999999999999999999988763211 111111111222 33334
Q ss_pred cCcccccCCCEEEEecccc--------hhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcC--CC-ce----
Q 009963 219 LDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KD-RI---- 280 (521)
Q Consensus 219 ~~~~~~~~aDlVIeav~e~--------~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~--~~-r~---- 280 (521)
++ +++||+||.|||.. ...-..+.+.+.+.++++++++ ..||+++. ++...+.. +. ++
T Consensus 71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI-~~STv~pgtt~~~~~~l~~~~~~~~~~~~~ 146 (415)
T PRK11064 71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVI-LESTSPVGATEQMAEWLAEARPDLTFPQQA 146 (415)
T ss_pred cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEE-EeCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence 33 45899999999975 2334456678888899998875 34555443 33332211 00 00
Q ss_pred -eecc---cccccC--CCC-------eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCc-cc---chhhchHH----H
Q 009963 281 -VGAH---FFSPAH--VMP-------LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF----P 339 (521)
Q Consensus 281 -ig~h---f~~P~~--~~~-------lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~-~G---fi~nRil~----~ 339 (521)
.+.. -++|-. ... +.-++.+ .+++..+.+.++++.+++.++++++. .+ -++++.+. +
T Consensus 147 g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia 224 (415)
T PRK11064 147 GEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIA 224 (415)
T ss_pred cCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 0101 125521 111 1235544 37888999999999999877777642 22 23444443 5
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 340 ~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++||+..+.+ .|+++.++-+++.
T Consensus 225 ~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 225 FANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhc
Confidence 6899998875 6999999877765
No 62
>PLN02858 fructose-bisphosphate aldolase
Probab=99.34 E-value=2.8e-11 Score=142.73 Aligned_cols=190 Identities=19% Similarity=0.213 Sum_probs=133.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
..++|+|||+|.||.+||..|+++|++|++||+++++++... +.|.. ...+. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGGL-------------AGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCCe-------------ecCCHHHHH
Confidence 358999999999999999999999999999999998876532 22321 12233 457
Q ss_pred cCCCEEEEecccchhhHHHHHH--HHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeecccc-cccC-------C
Q 009963 225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH-------V 291 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~--~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~hf~-~P~~-------~ 291 (521)
++||+||.|||...+++..++. .+.+.+.++.+++ ++||+++. +++..+.. .-.|.+|. .|+. .
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~ 455 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAM 455 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhc
Confidence 8999999999988777666653 3555677888776 45666665 34444321 01366665 3543 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc--c---hhhchHHH----HHHHHHHHHH-cCCCHHHHHHHH
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI 361 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G--f---i~nRil~~----~~~ea~~l~~-~G~~~~~ID~a~ 361 (521)
..|.-++.| +++.++.++++++.+|+..+++...+| . ++|+++.. .++|++.+.+ .|++++.+-+++
T Consensus 456 G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 456 GTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred CCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345556666 678899999999999998777543233 2 55665543 3689988875 799999988888
Q ss_pred H-hcC
Q 009963 362 T-KFG 365 (521)
Q Consensus 362 ~-~~g 365 (521)
. +.|
T Consensus 533 ~~s~g 537 (1378)
T PLN02858 533 SNAGG 537 (1378)
T ss_pred Hhhcc
Confidence 7 544
No 63
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.33 E-value=1.2e-10 Score=118.63 Aligned_cols=205 Identities=16% Similarity=0.110 Sum_probs=134.3
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEecccc
Q 009963 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 237 (521)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~ 237 (521)
|.+||..|+++|++|++||++++.++... .+...+.| +..+++. +.+++||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 88999999999999999999998654311 11112223 2233343 5578999999999976
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHH----HHHhhcCCCceeecccccccCC----CCeEEEEeCC------CC
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT 303 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~----ia~~~~~~~r~ig~hf~~P~~~----~~lveiv~~~------~t 303 (521)
. ..+.++..+.+.++++++++ ++|+.+... +...+..+.+.+|.||+.|... ..-++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 5 35677888988899998887 455655543 3345544456778888876542 1224455443 34
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecCcccc---hhhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcCCCccHHHHh
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFGMPMGPFRLA 374 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~d~~Gf---i~nRil~~~----~~ea~~l~~-~G~~~~~ID~a~~-~~g~p~GPf~~~ 374 (521)
+++.++.++++++.+|+.+++++...|. ..|.++.+. ..|++.+.+ .|.+|.+.-.-+- . --.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~--~~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILM--TLQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHHHHHHH
Confidence 8899999999999999988888743333 345555443 567777775 4556655433332 1 113556777
Q ss_pred hhcCchHHHHHh
Q 009963 375 DLVGFGVAIATG 386 (521)
Q Consensus 375 D~~Gld~~~~~~ 386 (521)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 777877766654
No 64
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.31 E-value=9.9e-11 Score=119.36 Aligned_cols=194 Identities=14% Similarity=0.127 Sum_probs=120.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHhhhcccccccCcc-c
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ--EKFEKTISLLTGVLDYE-S 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~~-~ 223 (521)
|+||+|||+|.||+.+|..|+++|++|++||++++.++...+. +.... .+. .....+..+.+.+ .
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~~ 68 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD-----------RENPRYLPGI-KLPDNLRATTDLAEA 68 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-----------CcccccCCCC-cCCCCeEEeCCHHHH
Confidence 3689999999999999999999999999999999887654321 10000 000 0001233344553 5
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-------HHHHhhcCCCceeecccc-cccC-----
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-------LIGERTYSKDRIVGAHFF-SPAH----- 290 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-------~ia~~~~~~~r~ig~hf~-~P~~----- 290 (521)
+++||+||.|+|.. ....++.++.+.+++++++++.+++++.+ .+...... . ....++ .|..
T Consensus 69 ~~~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~--~-~~~~~~~~P~~~~~~~ 143 (325)
T PRK00094 69 LADADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPD--L-APIAVLSGPSFAKEVA 143 (325)
T ss_pred HhCCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCC--C-CceEEEECccHHHHHH
Confidence 68999999999974 45778888888888899888777666542 22222211 0 011111 2332
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccc---------------------hhhchHH----HHHHH
Q 009963 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF---------------------AVNRMFF----PYTQA 343 (521)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gf---------------------i~nRil~----~~~~e 343 (521)
...++.+ .+ .+.+.++.+.++++..|..+....|..|. +.|..+. ..++|
T Consensus 144 ~g~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E 220 (325)
T PRK00094 144 RGLPTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAE 220 (325)
T ss_pred cCCCcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 1123333 32 36788999999999999877776554331 1222222 33577
Q ss_pred HHHHHH-cCCCHHHHHHH
Q 009963 344 AFLLVE-RGTDLYLIDRA 360 (521)
Q Consensus 344 a~~l~~-~G~~~~~ID~a 360 (521)
++.+.+ .|++++.+...
T Consensus 221 ~~~la~~~G~d~~~~~~~ 238 (325)
T PRK00094 221 ITRLGVALGANPETFLGL 238 (325)
T ss_pred HHHHHHHhCCChhhhhcc
Confidence 777764 57777776543
No 65
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.31 E-value=7.3e-11 Score=118.68 Aligned_cols=184 Identities=17% Similarity=0.109 Sum_probs=126.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+|||.|.||.++|..|..+|++|++++++.++..... .+.|. ...+..+.+++|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G~-------------~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADGF-------------EVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCCC-------------eeCCHHHHHhcC
Confidence 6899999999999999999999999999888754332210 11121 112223557899
Q ss_pred CEEEEecccchhhHHHHH-HHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC-------CCCeEE-EE
Q 009963 228 DMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMPLLE-IV 298 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~-------~~~lve-iv 298 (521)
|+||.+||.... ..++ .++.+.++++++| +.++++++..+....+...+++-.+|..|.+ .+..+. ++
T Consensus 75 DVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 999999996643 5777 7788889999988 8888999988766554456788889998887 333222 23
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCeEE-----EecC-c-ccchhhc-hH----HHHHHHHHHH-HHcCCCHHHH
Q 009963 299 -RTNQTSPQVIVDLLDIGKKIKKTPI-----VVGN-C-TGFAVNR-MF----FPYTQAAFLL-VERGTDLYLI 357 (521)
Q Consensus 299 -~~~~t~~e~~~~~~~l~~~lGk~~v-----vv~d-~-~Gfi~nR-il----~~~~~ea~~l-~~~G~~~~~I 357 (521)
.+...+.+..+.+..++..+|.++. .+.+ . ...+..+ ++ ..++..++.. ++.|.+|+.-
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3455668889999999999998875 3332 1 2222222 22 2345556554 4668777653
No 66
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.31 E-value=5e-11 Score=118.68 Aligned_cols=153 Identities=15% Similarity=0.073 Sum_probs=117.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
|++|+|||+|.||.+|+..|.++| ++|++|+++.+. ++... ... .....+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~~-----------~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DKY-----------PTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HHc-----------CCeEEeCCH
Confidence 468999999999999999999998 789999987532 22211 000 011123333
Q ss_pred -ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEE-e
Q 009963 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-R 299 (521)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv-~ 299 (521)
+.+.+||+||.|+|.. .-.+++.++.+.++++++|+|.+.++++++|...++. .+++.+.|+.|+.....+..+ .
T Consensus 59 ~e~~~~aDvVilavpp~--~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVPPL--AVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 3478999999999854 3457888888888888889999999999999997753 489999999998876666655 5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEE
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vv 324 (521)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6678888999999999999987755
No 67
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.30 E-value=6e-11 Score=125.65 Aligned_cols=187 Identities=16% Similarity=0.163 Sum_probs=126.2
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc----cc
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE----SF 224 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~~ 224 (521)
+|+|||+|.||.+||..|+++|++|++||+++++.+...+. ...|. .+....+.+ .+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999988764321 00010 011122222 34
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhcCCCceeecccc-cccCC-------CCe
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MPL 294 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~~~~r~ig~hf~-~P~~~-------~~l 294 (521)
+++|+||.|||....+ .+++.++.+.+.++.||++.+++.+.+ .....+.. .|.||+ .|+.. .+
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~----~gi~fvdapVsGG~~gA~~G~- 135 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA----KGILFVGSGVSGGEEGARKGP- 135 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh----cCCEEEcCCCCCCHHHHhcCC-
Confidence 5799999999987655 457788888888999887766554433 23333311 255555 34332 23
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeE------EEecC-cccc----hhhchHHHH---HHHHHHHHH--cCCCHHHHH
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP------IVVGN-CTGF----AVNRMFFPY---TQAAFLLVE--RGTDLYLID 358 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~------vvv~d-~~Gf----i~nRil~~~---~~ea~~l~~--~G~~~~~ID 358 (521)
.++.| .++++++.++++++.++..+ .++++ ..|. +.|-+...+ +.|++.++. .|++++++-
T Consensus 136 -~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~ 212 (467)
T TIGR00873 136 -SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIA 212 (467)
T ss_pred -cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444 47899999999999998763 67774 3343 334455443 689999873 688999998
Q ss_pred HHHHh
Q 009963 359 RAITK 363 (521)
Q Consensus 359 ~a~~~ 363 (521)
.++..
T Consensus 213 ~v~~~ 217 (467)
T TIGR00873 213 EVFTE 217 (467)
T ss_pred HHHHH
Confidence 88863
No 68
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.30 E-value=2.5e-11 Score=124.26 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=106.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccc
Q 009963 148 KKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF 224 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 224 (521)
++|+|||. |.||+++|..|.+. |++|+.+|++.+. ..+ .+.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 58999999 99999999999864 8999999985210 111 2357
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhh---CCCCceEEecCCcCc--HHHHHHhhcCCCceeecccccccCCC-----Ce
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHVM-----PL 294 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~---~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~~~-----~l 294 (521)
++||+||.|+|... -.++++++.+. ++++++|++.+|+.. ++.+ .....+|||.||+..++.. ..
T Consensus 50 ~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999764 45788888775 689999999988762 2333 2233479999999866532 33
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec-Ccccchhhch
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRM 336 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~nRi 336 (521)
+.+++. ...+.++.+.++++.+|..++.+. +.+..++..+
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYATPEHHDRVMALV 165 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence 345554 344557889999999999998886 3344444433
No 69
>PRK07680 late competence protein ComER; Validated
Probab=99.30 E-value=1.7e-10 Score=114.70 Aligned_cols=152 Identities=13% Similarity=0.062 Sum_probs=109.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
++|+|||+|.||..|+..|.++|+ +|.++|++++..+...++ . ..+..+.+. +
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~ 58 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEE 58 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHH
Confidence 379999999999999999999984 799999999876543210 0 012223333 4
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCe-EEEEeCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTN 301 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~l-veiv~~~ 301 (521)
.+.+||+||.|++.. .-.++++++.+.++++++++|.+++++++.+...+. .+++..+|..|...... .-++.++
T Consensus 59 ~~~~aDiVilav~p~--~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~ 134 (273)
T PRK07680 59 VISQSDLIFICVKPL--DIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGS 134 (273)
T ss_pred HHHhCCEEEEecCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCC
Confidence 478999999999744 346778888888888889999999899999988764 34566666544322222 2334566
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
..+++..+.+.+++..+|. ++.+.
T Consensus 135 ~~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 135 RCSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCCHHHHHHHHHHHHcCCC-EEEEC
Confidence 6778888999999999995 44554
No 70
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.28 E-value=2.4e-10 Score=112.67 Aligned_cols=181 Identities=13% Similarity=0.063 Sum_probs=121.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
+||+|||+|.||.+|+..|.++|++ +.++|++++..+...+. .+ ....+.+. +.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------~~------------~~~~~~~~~~~ 58 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------FP------------KVRIAKDNQAV 58 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------cC------------CceEeCCHHHH
Confidence 3799999999999999999999864 58899998876553211 00 11123333 34
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~~t 303 (521)
+.+||+||.|+|.+ ....++.++. +.++.+++|..++++++.+...+....+++..||+.|.....-+..+...
T Consensus 59 ~~~aDvVilav~p~--~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~-- 132 (258)
T PRK06476 59 VDRSDVVFLAVRPQ--IAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP-- 132 (258)
T ss_pred HHhCCEEEEEeCHH--HHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC--
Confidence 67899999999843 3456666662 46778888888999999999888655677888888776544333433321
Q ss_pred cHHHHHHHHHHHHhcCCeEEEecC--ccc------chhhchHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVGN--CTG------FAVNRMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~d--~~G------fi~nRil~~~~~ea~~l-~~~G~~~~~ID~a~~ 362 (521)
.+.+.++++.+|..+++..+ ..- +..| + ..++.++..+ ...|+++++...++.
T Consensus 133 ----~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~-~-~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 133 ----DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT-Y-FGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred ----HHHHHHHHHhcCCcEEECChHhccceeehhccHHH-H-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 14788999999988775432 111 1111 1 1244555544 457888888776664
No 71
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.26 E-value=3.1e-10 Score=111.00 Aligned_cols=189 Identities=14% Similarity=0.171 Sum_probs=127.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.+||+|||+|.||.+++..++++|. + |+++++ +++.++...+. .+ +..+.+.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 3589999999999999999998873 3 777887 46655442211 01 1123344
Q ss_pred -ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEE-EEe
Q 009963 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVR 299 (521)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve-iv~ 299 (521)
+.+.++|+||.|+|... -+++++++.+.++ +.+|+|.+.+++++.|...++...+++..||+.|......+. ++.
T Consensus 61 ~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 34689999999999763 3677888877665 568889999999999998886556788899987766543332 334
Q ss_pred CCCCcHHHHHHHHHHHHhcCCeEEEecCcccchh---hch---HHHHHHHHH-H-HHHcCCCHHHHHHHHH
Q 009963 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV---NRM---FFPYTQAAF-L-LVERGTDLYLIDRAIT 362 (521)
Q Consensus 300 ~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~---nRi---l~~~~~ea~-~-l~~~G~~~~~ID~a~~ 362 (521)
....+++..+.+++++..+|..+++ .+..-... .-. +..++.+++ . .+..|+++++-.+++.
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~-~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC-TEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE-CHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5667889999999999999998864 32111111 111 111223332 2 3467888877666654
No 72
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.25 E-value=1.8e-11 Score=123.95 Aligned_cols=126 Identities=21% Similarity=0.399 Sum_probs=95.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.+||+|||+|.||+++|..++..|+ +|+++|++++.+.. . .++..... .......++..++++++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-----~ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-----ALDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-----HHHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 99999999987532 1 11111110 0111223677778899999
Q ss_pred CCCEEEEec-------------------ccchhhHHHHHHHHHhhCCCC-ceEEecCCcCcHHHHHHhhcCC-Cceeecc
Q 009963 226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (521)
Q Consensus 226 ~aDlVIeav-------------------~e~~~~k~~v~~~l~~~~~~~-~il~sntS~l~i~~ia~~~~~~-~r~ig~h 284 (521)
+||+||+++ .++..++++++.++.+.+++. .|++||.+.+....+......| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 667888999999999999774 5668999888877777776665 8899986
No 73
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.24 E-value=1.2e-10 Score=117.12 Aligned_cols=204 Identities=16% Similarity=0.091 Sum_probs=136.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||+|.||.++|..|..+|++|+++++. .+..+.+. +.|. ..++..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~Gv-------------~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDGF-------------KVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCCC-------------EECCHHHHHhc
Confidence 58999999999999999999999998876554 33333321 1221 12222345789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCC-------CCeE-EEE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLL-EIV 298 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~-------~~lv-eiv 298 (521)
||+||.+||.... ...+.+++.+.++++. ++|...+++++.+...++...+++...|+.|.+. ...+ -++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 9999999996633 4466677888888776 5688889999988877755567999999999973 4444 343
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCe-------EE--Eec-Ccccc--hhhchHHHHHHHHH-HHHHcCCCHHHHHHHHH-h
Q 009963 299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPYTQAAF-LLVERGTDLYLIDRAIT-K 363 (521)
Q Consensus 299 -~~~~t~~e~~~~~~~l~~~lGk~-------~v--vv~-d~~Gf--i~nRil~~~~~ea~-~l~~~G~~~~~ID~a~~-~ 363 (521)
.++..+.+..+.+..++..+|.+ .. .+. |--+- ...-..-+|+...+ .|++.|.+|+.--.... .
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHE 217 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66667888899999999999988 21 221 11111 11112223332222 23788998876555443 2
Q ss_pred cCCCccHHHHhhhcCch
Q 009963 364 FGMPMGPFRLADLVGFG 380 (521)
Q Consensus 364 ~g~p~GPf~~~D~~Gld 380 (521)
+ .|--+++-..|+.
T Consensus 218 ~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 218 L---KLIVDLIYEGGIT 231 (314)
T ss_pred H---HHHHHHHHHhcHH
Confidence 2 5777777777774
No 74
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.23 E-value=5.8e-10 Score=114.60 Aligned_cols=167 Identities=12% Similarity=0.115 Sum_probs=106.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---HHHHHhhhcccccccCcc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MT---QEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~ 222 (521)
++||+|||+|.||+.+|..|+++|++|+++|+++. .+... +.|. ++ ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999999653 22211 1121 00 000001112344455666
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhcCCCceeeccccc-----ccCC--CCe
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFS-----PAHV--MPL 294 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~~~~r~ig~hf~~-----P~~~--~~l 294 (521)
.+.++|+||.||+... ..++++++.+.+++++++++.++++.. +.+...+.....+.|.++++ |... ...
T Consensus 70 ~~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 7889999999998653 467888999989999998888888764 45666554333344545532 2110 000
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
-.+.-+. .+.+..+.++++..|....+.+|..+
T Consensus 148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred CceEecC---CchHHHHHHHHHhcCCCceecchhHH
Confidence 0111121 23467888999999988888877543
No 75
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.22 E-value=3.4e-10 Score=128.04 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=117.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
++||+|||+|.||.+++..+.++| ++|++||++++.++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 579999999999999999999999 47999999998766532 223211 012233 34
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhc-CCCceeecccccccC----------
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH---------- 290 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~-~~~r~ig~hf~~P~~---------- 290 (521)
+++||+||.|+|.+ ....+++++.+.+++++++++.+|+. .++.+...+. .+.||++.||+....
T Consensus 61 ~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 78999999999965 46788899988888888876555432 2556665543 356899999985222
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 291 --~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
..+.+.+++...++++..+.+.++++.+|..++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234567788888899999999999999999888886
No 76
>PLN02600 enoyl-CoA hydratase
Probab=99.22 E-value=4.6e-11 Score=117.23 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=85.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++++.++|++++.. |+
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~--~p---------------------------------- 195 (251)
T PLN02600 152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQK--GP---------------------------------- 195 (251)
T ss_pred HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.|..++.++++++++.+|++||+++
T Consensus 196 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 247 (251)
T PLN02600 196 LAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV 247 (251)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 1445788999888778899999999999999999999999999999988654
No 77
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=4.8e-11 Score=117.34 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=85.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-P----------------------------------- 199 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|+.++.....++++++..|.+.+..++.|+++++++.+|+++|+++.
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~ 252 (255)
T PRK08150 200 LTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKV 252 (255)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 14446788888877788999999999999999999999999999999887654
No 78
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.21 E-value=2.7e-11 Score=135.29 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=76.6
Q ss_pred ccchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccccH
Q 009963 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (521)
Q Consensus 329 ~Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 402 (521)
+..|+||++.++++||++++++|+ +|+|||.+|+ ++|||+ |||+++|.+|+|+++++++.+. .+++++.|+++
T Consensus 624 ~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~ 702 (715)
T PRK11730 624 DEEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEG 702 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHH
Confidence 356999999999999999999994 9999999999 999986 9999999999999999999764 57777788999
Q ss_pred HHHHHHCCCCCccCCceee
Q 009963 403 IPIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 403 l~~~~~~G~~G~k~g~GfY 421 (521)
+++|+++| ++||
T Consensus 703 L~~~v~~~-------~~f~ 714 (715)
T PRK11730 703 LREMAANG-------ESYY 714 (715)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999875 6786
No 79
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.21 E-value=3.4e-11 Score=114.64 Aligned_cols=97 Identities=24% Similarity=0.269 Sum_probs=87.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||.++++.+|..|+++++..+ |
T Consensus 191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~-~----------------------------------- 234 (290)
T KOG1680|consen 191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS-P----------------------------------- 234 (290)
T ss_pred HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999863 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
..+.+.|+.++.+...+..+++..|+..|...+.+++.++++.+|.++|+.+.
T Consensus 235 ~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~ 287 (290)
T KOG1680|consen 235 LVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKF 287 (290)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccc
Confidence 14457889999999999999999999999999999999999999988776653
No 80
>PLN02888 enoyl-CoA hydratase
Probab=99.20 E-value=6.5e-11 Score=117.04 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=86.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN-Q----------------------------------- 206 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhhccCCCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVP 135 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~--~s~~a~~~~~aF~~kr~~~k~~ 135 (521)
.+...+|++++.....++++++..|.+.+..++ .++++++++.+|++||+.+|.|
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 207 GMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 245578899988878889999999999888885 5999999999999999888754
No 81
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.6e-11 Score=117.68 Aligned_cols=96 Identities=24% Similarity=0.284 Sum_probs=85.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|+|+++++++|.+++++++.. |+
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 201 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASF--SL---------------------------------- 201 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998774 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
+++..+|++++.....++++++..|.+.|..++.|+++++++++|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~ 253 (257)
T PRK05862 202 PAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPV 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 2556789999988888999999999999999999999999999999987654
No 82
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.1e-11 Score=120.31 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=85.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.+||++++.. |+
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~--~p---------------------------------- 216 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARI--PL---------------------------------- 216 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 22
Q ss_pred chHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHhCCHHHH--------HHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~a~--------~~~~aF~~kr~~~k 133 (521)
.+...+|++++.+.. .++++++..|...+..++.|++++ +++.+|++||++.-
T Consensus 217 ~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f 278 (298)
T PRK12478 217 SQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPF 278 (298)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 144578888888766 468999999999999999999997 49999999998754
No 83
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.20 E-value=3.6e-11 Score=121.21 Aligned_cols=122 Identities=22% Similarity=0.358 Sum_probs=90.5
Q ss_pred EEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009963 150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (521)
|+|||+|.||.++|..++..|+ +|+++|++++.+ ++... ...+ . ........++..+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~-~g~~~--dl~~-~--------~~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLP-QGKAL--DISQ-A--------APILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHH-HHHHH--HHHH-h--------hhhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 999999998754 32211 1110 0 00111124666677888999999
Q ss_pred EEEEec--------------ccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHHHHHhhcC-CCceeec
Q 009963 229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (521)
Q Consensus 229 lVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~ia~~~~~-~~r~ig~ 283 (521)
+||+++ +++..+++++++++.+.++++. |++||.+.+....+...... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 7889999999999999998777 46788877766666666554 5678876
No 84
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=6.3e-11 Score=116.94 Aligned_cols=96 Identities=32% Similarity=0.315 Sum_probs=85.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||+++++++|.++|++++.. |+
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 205 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARM--PP---------------------------------- 205 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998764 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.++..+|++++.....++++++..|.+.|..++.|+++++++++|+++|+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~ 257 (261)
T PRK08138 206 LALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPA 257 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 2555788999888788899999999999999999999999999999987654
No 85
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.19 E-value=6.1e-11 Score=116.77 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-T----------------------------------- 200 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.+..++.|+++++++.+|+++|+++
T Consensus 201 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 252 (256)
T TIGR02280 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQ 252 (256)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCC
Confidence 1445788999888778899999999999999999999999999999987654
No 86
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=6.1e-11 Score=117.06 Aligned_cols=95 Identities=27% Similarity=0.423 Sum_probs=85.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||+++++++|.+++++++..+ |
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS-P----------------------------------- 207 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~ 131 (521)
.++..+|++++.....++++++..|.+.+..++.++++++++.+|++||++
T Consensus 208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p 258 (260)
T PRK05980 208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRP 258 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCC
Confidence 245578889988878889999999999999999999999999999998864
No 87
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=8.6e-11 Score=115.81 Aligned_cols=96 Identities=31% Similarity=0.484 Sum_probs=85.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS-P----------------------------------- 201 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.++..+|++++.....+++++++.|.+.|..++.|+++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 253 (257)
T PRK07658 202 ATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPS 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 2455788888888777899999999999999999999999999999987654
No 88
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.19 E-value=6.3e-10 Score=109.77 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=109.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+||+|||+|+||++|+..+.++|. +++++|++++.. +. ....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~------------~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PF------------VYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------Ce------------EEeCChHHH
Confidence 489999999999999999998873 499999887532 00 001122234
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCe-EEEEeCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTNQ 302 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~l-veiv~~~~ 302 (521)
+.+||+||.|++.. .-..++.++.+.++++ +++|..++++++.+...++...+++...|..|.....- .-+++.+.
T Consensus 55 ~~~~D~Vilavkp~--~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVKPD--LAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeCHH--HHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 67899999999754 4568888888777654 56788999999999887765556777777777665444 34557777
Q ss_pred CcHHHHHHHHHHHHhcCCeEEE
Q 009963 303 TSPQVIVDLLDIGKKIKKTPIV 324 (521)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~vv 324 (521)
.+++..+.+.+++..+|...++
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 8888899999999999987655
No 89
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.18 E-value=9.9e-10 Score=115.48 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=124.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHhhhcccccccCcc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-----TQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~~~~~ 222 (521)
+||+|||.|.||..+|.+|+. |++|++||+++++++... .|.. ..++... ..++.++++.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~-~g~l~~t~~~~ 72 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELRE-ARYLKFTSEIE 72 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHh-hCCeeEEeCHH
Confidence 689999999999999999877 699999999999988753 2221 0111111 23566777777
Q ss_pred cccCCCEEEEecccch------hhHHH--HHHHHHhhCCCCceEEecCCcCcHH---HHH-HhhcC--CCceeeccc---
Q 009963 223 SFKDVDMVIEAIIENV------SLKQQ--IFADLEKYCPPHCILASNTSTIDLN---LIG-ERTYS--KDRIVGAHF--- 285 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~------~~k~~--v~~~l~~~~~~~~il~sntS~l~i~---~ia-~~~~~--~~r~ig~hf--- 285 (521)
.+++||+||.|||... ++... ..+.+.+.++++.+++ ..||+++. ++. ..+.. ..++ +-.|
T Consensus 73 ~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI-~~STv~pgtt~~~~~~~l~~~~g~~~-~~~~~~~ 150 (425)
T PRK15182 73 KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV-YESTVYPGCTEEECVPILARMSGMTF-NQDFYVG 150 (425)
T ss_pred HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE-EecCCCCcchHHHHHHHHHhccCCCc-CCCeeEe
Confidence 8899999999999662 22222 2356778888888775 45566553 221 22211 0011 1111
Q ss_pred ccccCCC---------CeEEEEeCCCCcHHHHHHHHHHHHhcC-CeEEEecC-cccc---hhhchHH----HHHHHHHHH
Q 009963 286 FSPAHVM---------PLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGN-CTGF---AVNRMFF----PYTQAAFLL 347 (521)
Q Consensus 286 ~~P~~~~---------~lveiv~~~~t~~e~~~~~~~l~~~lG-k~~vvv~d-~~Gf---i~nRil~----~~~~ea~~l 347 (521)
|+|.... .+--++.|. +++..+.+..+++.+. ..++++.+ ..+. ++|+++. +++||++.+
T Consensus 151 ~~PE~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 151 YSPERINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred eCCCcCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2443221 122255553 4677888899998875 34566654 2232 4455443 568999988
Q ss_pred HH-cCCCHHHHHHHHH
Q 009963 348 VE-RGTDLYLIDRAIT 362 (521)
Q Consensus 348 ~~-~G~~~~~ID~a~~ 362 (521)
.+ .|+++.++=.++.
T Consensus 229 ae~~GiD~~~v~~a~~ 244 (425)
T PRK15182 229 FNRLNIDTEAVLRAAG 244 (425)
T ss_pred HHHhCcCHHHHHHHhc
Confidence 75 6999999877765
No 90
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.18 E-value=4.6e-11 Score=133.15 Aligned_cols=85 Identities=21% Similarity=0.349 Sum_probs=76.9
Q ss_pred ccchhhchHHHHHHHHHHHHHcC-C-CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccccH
Q 009963 329 TGFAVNRMFFPYTQAAFLLVERG-T-DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (521)
Q Consensus 329 ~Gfi~nRil~~~~~ea~~l~~~G-~-~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 402 (521)
...|+||++.+++||+++++++| + +++|||.++. |+|||+ |||+++|.+|+|.+.++++.+. .+++++.|+++
T Consensus 624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~ 702 (714)
T TIGR02437 624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAK 702 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHH
Confidence 35699999999999999999999 4 9999999999 999997 9999999999999999999654 78888888999
Q ss_pred HHHHHHCCCCCccCCceee
Q 009963 403 IPIMQEDKRAGETTRKGFY 421 (521)
Q Consensus 403 l~~~~~~G~~G~k~g~GfY 421 (521)
+.+|+++| +.||
T Consensus 703 l~~~~~~g-------~~f~ 714 (714)
T TIGR02437 703 LREMAKNG-------QSFY 714 (714)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999985 5676
No 91
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.17 E-value=9.4e-11 Score=115.99 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=85.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.+.+++++++.. |+
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 210 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAK--SP---------------------------------- 210 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++++..|.+.+..++.++++++++.+|++||+++
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK08139 211 AAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPE 262 (266)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1445788999888888899999999999999999999999999999887654
No 92
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=6.6e-11 Score=115.95 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=83.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++.. |+
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 198 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAK--DT---------------------------------- 198 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|+.++.....++++++..|.+.+..++.++++++++.+|++||+
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~ 248 (249)
T PRK07938 199 RVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRK 248 (249)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCC
Confidence 14446888888877778899999999999999999999999999999875
No 93
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=1e-10 Score=116.47 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=85.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 221 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP-T----------------------------------- 221 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.+..++.|+++++++.+|++||+++
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 273 (277)
T PRK08258 222 FAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPV 273 (277)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1444688899888788899999999999999999999999999999988765
No 94
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=1.1e-10 Score=114.85 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=84.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+.+.+++++++.. |+
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 206 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGC--GP---------------------------------- 206 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|+.++.....++++++..|.+.+..++.++++++++++|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 207 QALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 14456888888887788999999999999999999999999999999874
No 95
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.15 E-value=5.8e-10 Score=113.92 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=98.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
.+||+|||+|.||.+||..|+++|++|++|+++++..+.....- ..+..-+. .....++..+++. +.++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~--------~~~~~~~g--~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAER--------ENREYLPG--VALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhC--------cccccCCC--CcCCCCeEEeCCHHHHHc
Confidence 35899999999999999999999999999999988766543210 00100000 0011123345555 4478
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc-----HHHHHHhhcC----CCceeecccccccC---CCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS----KDRIVGAHFFSPAH---VMP 293 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~-----i~~ia~~~~~----~~r~ig~hf~~P~~---~~~ 293 (521)
+||+||.|+|+.. + ++++ +.+++++++++.+.++. ...+++.+.. ...+++ -|..+.+ ..+
T Consensus 74 ~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~ 146 (328)
T PRK14618 74 GADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLP 146 (328)
T ss_pred CCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCC
Confidence 9999999999873 2 3333 45667777776666554 3355554421 111121 1111111 113
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
.+.++.+ .+++.++.+++++...|..+.+..|
T Consensus 147 ~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~d 178 (328)
T PRK14618 147 AATVVAS--PEPGLARRVQAAFSGPSFRVYTSRD 178 (328)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCC
Confidence 3344444 3688899999999999987775444
No 96
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.15 E-value=1.4e-10 Score=114.56 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=85.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 206 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP-T----------------------------------- 206 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.+..++.++++++++.+|+++|++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK08140 207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR 258 (262)
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 1445688888888778899999999999999999999999999999987654
No 97
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.15 E-value=1.4e-10 Score=114.63 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=85.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.+++++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~-~----------------------------------- 207 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG-P----------------------------------- 207 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC-h-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.+..++.++++++++++|+++|+++
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 259 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPN 259 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 1455788899888778899999999999999999999999999999887654
No 98
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.15 E-value=8.1e-10 Score=106.21 Aligned_cols=163 Identities=18% Similarity=0.163 Sum_probs=107.4
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+||| +|.||++++..|+++|++|+++++++++++......... ....| +. ..+..+++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccC-CC--------ceEEEeChHHHHhc
Confidence 4799997 899999999999999999999999998876543221110 00011 00 01222333466889
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-----------------HHHHHhhcCCCceeeccccccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA 289 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-----------------~~ia~~~~~~~r~ig~hf~~P~ 289 (521)
+|+||.|||... -.+++.++...++. ++++|.+.++++ +.+++.++...+++....+.|.
T Consensus 69 aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998653 35666777666654 778777777665 3455555432677777544332
Q ss_pred CC-------CCeEEEEeCCCCcHHHHHHHHHHHHhc-CCeEEEecC
Q 009963 290 HV-------MPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (521)
Q Consensus 290 ~~-------~~lveiv~~~~t~~e~~~~~~~l~~~l-Gk~~vvv~d 327 (521)
.. .+.-..+.|+ +++..+.+.++.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 21 1222345664 566788899999999 999998874
No 99
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.15 E-value=1.4e-10 Score=114.42 Aligned_cols=96 Identities=27% Similarity=0.440 Sum_probs=85.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|+|++++++.|.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (260)
T PRK05809 161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA-P----------------------------------- 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.+...+++++++.|.+.+..++.|+++++++++|+++|+++
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 256 (260)
T PRK05809 205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN 256 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 2455788999888888899999999999999999999999999999988654
No 100
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.15 E-value=1.1e-10 Score=118.34 Aligned_cols=125 Identities=23% Similarity=0.390 Sum_probs=93.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||.++|..++..| .+|.++|++++.++ +.. ++..... .......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-----lDl~~~~------~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-----LDLKHFS------TLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-----HHHhhhc------cccCCCeEEEeCCCHHHhCC
Confidence 59999999999999999999999 69999999987754 221 1110000 00111135666678899999
Q ss_pred CCEEEEec--ccch------------hhHHHHHHHHHhhCCCC-ceEEecCCcCcHHHHHHhhcCC-Cceeecc
Q 009963 227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (521)
Q Consensus 227 aDlVIeav--~e~~------------~~k~~v~~~l~~~~~~~-~il~sntS~l~i~~ia~~~~~~-~r~ig~h 284 (521)
||+||+++ |+++ .+++++.+.+.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999998 7766 78999999999998777 5667888877766666666555 7888876
No 101
>PLN02712 arogenate dehydrogenase
Probab=99.15 E-value=6.3e-10 Score=122.85 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=108.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 225 (521)
.++|+|||+|.||.++|..|.+.|++|++||++.+. +.+. +.|. ....+.++ +.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~Gv-------------~~~~~~~el~~ 423 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLGV-------------SYFSDADDLCE 423 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcCC-------------eEeCCHHHHHh
Confidence 478999999999999999999999999999998642 2211 1221 12234433 43
Q ss_pred -CCCEEEEecccchhhHHHHHHHHHh-hCCCCceEEecCCc--CcHHHHHHhhcCCCceeecccccccCCCC--------
Q 009963 226 -DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMP-------- 293 (521)
Q Consensus 226 -~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~--l~i~~ia~~~~~~~r~ig~hf~~P~~~~~-------- 293 (521)
+||+||.|||.. .-..++.++.. .+++++|+++.+|+ .+++.+...++...+|++.||+.+.....
T Consensus 424 ~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~ 501 (667)
T PLN02712 424 EHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAF 501 (667)
T ss_pred cCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhh
Confidence 589999999954 34566777654 57889999988887 45566666655555799999998766431
Q ss_pred eE--EEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 294 LL--EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 294 lv--eiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
++ .++.++....+.++.+.+++..+|..++.+.
T Consensus 502 lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 502 VFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 11 1233444556667778899999999888886
No 102
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.15 E-value=1.3e-10 Score=115.71 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=87.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++.. |+
T Consensus 172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 215 (278)
T PLN03214 172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKL--PS---------------------------------- 215 (278)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k~~ 135 (521)
.+...+|++++.....++++++..|.+.+..++.|+++++++.+|++|.+.||..
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 216 AARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 1444688888888777899999999999999999999999999999988777643
No 103
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.4e-10 Score=114.30 Aligned_cols=96 Identities=24% Similarity=0.282 Sum_probs=85.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|++|+++||||+|||++++++.|.+++++++.. |+
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~--~~---------------------------------- 201 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASK--SP---------------------------------- 201 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++.++++.|.+.+..++.|++.++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~ 253 (257)
T PRK06495 202 LATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPV 253 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCC
Confidence 1444678888888778899999999999999999999999999999988754
No 104
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.6e-10 Score=113.95 Aligned_cols=96 Identities=25% Similarity=0.359 Sum_probs=84.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 202 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS-P----------------------------------- 202 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++.+..|.+.|..++.++++++++.+|++||+++
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 254 (258)
T PRK09076 203 SAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQ 254 (258)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 2455788888887777899999999999999999999999999999987654
No 105
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.14 E-value=2e-10 Score=113.04 Aligned_cols=96 Identities=25% Similarity=0.340 Sum_probs=85.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 199 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS-P----------------------------------- 199 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.|..++.+++.++++.+|++||+++
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~ 251 (255)
T PRK09674 200 LALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPD 251 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 1445688888888788899999999999999999999999999999987654
No 106
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.9e-10 Score=114.02 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=85.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++++.++|++++.. |+
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 213 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGN--AP---------------------------------- 213 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++.++.|.+.+..++.|+++++++.+|++||+++
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 265 (269)
T PRK06127 214 LTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPV 265 (269)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 1445688888888778899999999999999999999999999999988654
No 107
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.6e-10 Score=114.47 Aligned_cols=96 Identities=21% Similarity=0.182 Sum_probs=84.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.+++++++.. |+
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~--~~---------------------------------- 210 (266)
T PRK05981 167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANG--PT---------------------------------- 210 (266)
T ss_pred HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||+++
T Consensus 211 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 262 (266)
T PRK05981 211 VALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQ 262 (266)
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999988654
No 108
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=1.8e-10 Score=113.41 Aligned_cols=96 Identities=26% Similarity=0.313 Sum_probs=84.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.+++++++.. |+
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 199 (255)
T PRK06563 156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARA--AP---------------------------------- 199 (255)
T ss_pred HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhc--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++.++++.|.+.+..++.++++++++.+|++||+++
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 251 (255)
T PRK06563 200 LGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR 251 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999988654
No 109
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.14 E-value=1.6e-10 Score=116.91 Aligned_cols=125 Identities=23% Similarity=0.332 Sum_probs=84.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+... .. ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~---~~---------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA---AP---------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh---hh---------hcCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 9999999988754321111111 00 011123566677888899
Q ss_pred CCCEEEEec--------------ccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHHHHHhhcC-CCceeec
Q 009963 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (521)
Q Consensus 226 ~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~ia~~~~~-~~r~ig~ 283 (521)
+||+||+++ .++..+++++++++.+.+++.. |++||.+.+-...+...... |.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 3566889999999999986653 34565544333333333222 3566665
No 110
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=1.8e-10 Score=113.34 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=84.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++.. |+
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 198 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAAN--GP---------------------------------- 198 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.+...++++.++.|.+.+..++.++++++++.+|++||+++
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 250 (254)
T PRK08252 199 LAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPV 250 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 1445678888887777899999999999999999999999999999876543
No 111
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=2.1e-10 Score=113.23 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=84.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++++++|.+++++++..+ |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 205 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-P----------------------------------- 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999987752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.+...++++++..|.+.|..++.++++++++++|+++|+++
T Consensus 206 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 206 NALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 1444678888888788899999999999999999999999999999987643
No 112
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=2.9e-09 Score=107.16 Aligned_cols=202 Identities=18% Similarity=0.242 Sum_probs=129.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (521)
|||+|||.|-.|...+.+|+..||+|+.+|+++++++...+.. +..++.+++++.. -+|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~--------~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA--------SGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccc--------cCcEEEEcCHHH
Confidence 5899999999999999999999999999999999998765443 2233444443322 14688999986
Q ss_pred cccCCCEEEEecccchh--------hHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhc--CCCceeeccccccc
Q 009963 223 SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHFFSPA 289 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~--------~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~--~~~r~ig~hf~~P~ 289 (521)
+++++|++|.||+.+.. ....+.+++.++++..++++ +-||+|+. .+...+. .+.+-.++- +||-
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPE 150 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVA-SNPE 150 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEe-cChH
Confidence 58999999999965433 44566778888888766664 56788763 3333221 111111111 2332
Q ss_pred C----------CCCeEEEEeCCCCcHHHHHHHHHHHHhc--CCeEEEecCcc-c----chhhchHH---HHHHHHHHHHH
Q 009963 290 H----------VMPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNCT-G----FAVNRMFF---PYTQAAFLLVE 349 (521)
Q Consensus 290 ~----------~~~lveiv~~~~t~~e~~~~~~~l~~~l--Gk~~vvv~d~~-G----fi~nRil~---~~~~ea~~l~~ 349 (521)
- ..|-- ||-|.. ++.+.+.+.+++..+ ...|+++.+.. . +..|-+|+ +++||-..+.+
T Consensus 151 FLREG~Av~D~~~PdR-IViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 151 FLREGSAVYDFLYPDR-IVIGVR-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HhcCcchhhhccCCCe-EEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01111 333332 222455555565543 55677665422 1 34566665 57899988876
Q ss_pred -cCCCHHHHHHHH
Q 009963 350 -RGTDLYLIDRAI 361 (521)
Q Consensus 350 -~G~~~~~ID~a~ 361 (521)
-|++.++|-.++
T Consensus 229 ~~g~D~~~V~~gI 241 (414)
T COG1004 229 KVGADVKQVAEGI 241 (414)
T ss_pred HhCCCHHHHHHHc
Confidence 588888887765
No 113
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=2.3e-10 Score=113.31 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=84.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 210 (266)
T PRK09245 167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP-P----------------------------------- 210 (266)
T ss_pred HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++.+..|.+.+..++.++++++++.+|++||++.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 262 (266)
T PRK09245 211 HALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPV 262 (266)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCC
Confidence 1445688888888778899999999999999999999999999999987654
No 114
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.12 E-value=2.6e-10 Score=112.67 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=83.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~-~----------------------------------- 206 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA-P----------------------------------- 206 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.......++.++.|.+.+..++.|+++++++.+|+++|+++
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~ 258 (262)
T PRK07468 207 GAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPA 258 (262)
T ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCC
Confidence 1444678888776555678889999999999999999999999999988754
No 115
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=1.9e-10 Score=114.37 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=84.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++++|+||+++||||+|||+++++++|.++|++++....|
T Consensus 172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p----------------------------------- 216 (272)
T PRK06210 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP----------------------------------- 216 (272)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCH-----------------------------------
Confidence 578999999999999999999999999999999999998863112
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|.+.+..++.++++++++.+|++||++.
T Consensus 217 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 268 (272)
T PRK06210 217 ASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPR 268 (272)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 1445688888888778899999999999999999999999999999987654
No 116
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=2.4e-10 Score=112.74 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=85.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 204 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG-P----------------------------------- 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.+..++.|+++++++.+|+++|+++
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~ 256 (260)
T PRK07657 205 IAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPM 256 (260)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 2455788899888778899999999999999999999999999999987654
No 117
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.11 E-value=1.3e-09 Score=107.30 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=102.0
Q ss_pred HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccchh
Q 009963 162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (521)
Q Consensus 162 iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~ 239 (521)
||..|.++| ++|+.+|++++.++.+. +.|.++. ...+.+.+++||+||.|+|.+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP~~~- 57 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVPVSA- 57 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S-HHH-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCCHHH-
Confidence 678888998 79999999999887753 3454431 1222567899999999998664
Q ss_pred hHHHHHHHHHhhCCCCceEEecCCcC--cHHHHHHhhcCCCceeecccccccC------------CCCeEEEEeCCCCcH
Q 009963 240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP 305 (521)
Q Consensus 240 ~k~~v~~~l~~~~~~~~il~sntS~l--~i~~ia~~~~~~~r~ig~hf~~P~~------------~~~lveiv~~~~t~~ 305 (521)
-..+++++.+.+++++++++.+|.. ++..+...+....+|+|.||+..++ ....+.+++++.+++
T Consensus 58 -~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 58 -IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp -HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred -HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 5688999999999999999988875 3455556555567999999996551 245677889999999
Q ss_pred HHHHHHHHHHHhcCCeEEEec
Q 009963 306 QVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+.++.+.++++.+|..++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999888875
No 118
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.11 E-value=3e-10 Score=112.23 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=84.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+++.++|++++.. |+
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 205 (262)
T PRK05995 162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVAN--SP---------------------------------- 205 (262)
T ss_pred HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++.+. ++.|.+.+..++.|+++++++.+|+++|+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~ 258 (262)
T PRK05995 206 QAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPA 258 (262)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 144568888888777788888 8899999999999999999999999988654
No 119
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.10 E-value=2.4e-09 Score=108.42 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=93.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||.+||..|+.+|++|++||+++.. + ..+.+++|
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~---------------------~---------------~~~~~~~a 48 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL---------------------S---------------LAAVLADA 48 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC---------------------C---------------HHHHHhcC
Confidence 58999999999999999999999999999998530 0 01235689
Q ss_pred CEEEEecccchhhHHHHHHHHHhh-CCCCceEEecCCcCcHH------HHHH-hhcCCCceeecccccccC------CCC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLN------LIGE-RTYSKDRIVGAHFFSPAH------VMP 293 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~l~i~------~ia~-~~~~~~r~ig~hf~~P~~------~~~ 293 (521)
|+||.|+|.. ..+.++.++... +++++++++.|+++++. ++.. .+.. .+++. +..|.. ..+
T Consensus 49 dvvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~~~ 123 (308)
T PRK14619 49 DVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQGLP 123 (308)
T ss_pred CEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcCCC
Confidence 9999999974 456777888764 67888888876655433 2211 1111 12210 112211 112
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
...++.+ .+.+..+.+.+++...|..++..+|..|
T Consensus 124 ~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 124 AATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred eEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 2333333 3678889999999999988886666333
No 120
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.10 E-value=3e-10 Score=112.99 Aligned_cols=96 Identities=24% Similarity=0.208 Sum_probs=83.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|+|||++++|+||+++||||+|||+ +++.+++.++|++++..+ |
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~-p---------------------------------- 219 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS-P---------------------------------- 219 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 5789999999999999999999985 889999999999998852 2
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||++.
T Consensus 220 -~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 271 (275)
T PLN02664 220 -LAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV 271 (275)
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 1444678888887778899999999999999999999999999999987654
No 121
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.10 E-value=2.6e-10 Score=112.45 Aligned_cols=96 Identities=24% Similarity=0.322 Sum_probs=83.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS-P----------------------------------- 201 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHH--HHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E--~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..| ...+..++.++++++++.+|+++|+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~ 255 (259)
T PRK06494 202 LSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR 255 (259)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 1445678888887778899999998 557889999999999999999876543
No 122
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.09 E-value=2.8e-10 Score=113.05 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=84.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|+++|++++|+||+++||||+|||+ +++++.+.+++++++.. |+
T Consensus 173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~--~~--------------------------------- 217 (272)
T PRK06142 173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAK--SP--------------------------------- 217 (272)
T ss_pred HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhC--CH---------------------------------
Confidence 5789999999999999999999986 88999999999999875 22
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|...+..++.|+++++++.+|+++|+++
T Consensus 218 -~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~ 269 (272)
T PRK06142 218 -LAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE 269 (272)
T ss_pred -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 1445688888887777899999999999999999999999999999988644
No 123
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.09 E-value=3.2e-10 Score=111.86 Aligned_cols=96 Identities=26% Similarity=0.379 Sum_probs=84.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|+|++++++.|.++|++++.. |+
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~--~~---------------------------------- 203 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAG--PA---------------------------------- 203 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999998775 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.|..++.++++++++++|+++++++
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~ 255 (259)
T PRK06688 204 SALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD 255 (259)
T ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence 1334678888888778899999999999999999999999999999987543
No 124
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.08 E-value=1.8e-10 Score=123.88 Aligned_cols=96 Identities=9% Similarity=0.020 Sum_probs=87.2
Q ss_pred cccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCCc
Q 009963 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (521)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (521)
++||++++|+||+++||||+|||++++++++.++|++++..+ | .
T Consensus 446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p-----------------------------------~ 489 (550)
T PRK08184 446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS-P-----------------------------------D 489 (550)
T ss_pred HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC-H-----------------------------------H
Confidence 589999999999999999999999999999999999998862 2 2
Q ss_pred hHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhhccCCC
Q 009963 82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSK 133 (521)
Q Consensus 82 A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~a~~---~~~aF~~kr~~~k 133 (521)
|...+|++++.+...+++++ +..|.+.|..++.|+++++ ++.+|++||+++-
T Consensus 490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f 545 (550)
T PRK08184 490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQF 545 (550)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCC
Confidence 45578999999999999999 9999999999999999999 9999999998753
No 125
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.07 E-value=1.8e-10 Score=123.47 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=86.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++|||++|||++++++++.++|++++..+ |
T Consensus 441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 484 (546)
T TIGR03222 441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-P----------------------------------- 484 (546)
T ss_pred HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 4689999999999999999999999999999999999998862 2
Q ss_pred chHHHHHHHHHHhhhCChHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~a~~---~~~aF~~kr~~~ 132 (521)
.|...+|++++.+...+++++ +..|+++|..++.|+++++ ++.+|++||++.
T Consensus 485 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~ 540 (546)
T TIGR03222 485 DALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQ 540 (546)
T ss_pred HHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCC
Confidence 145578899999888999999 9999999999999999999 999999998864
No 126
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.07 E-value=4e-10 Score=111.26 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=82.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+.|.+|+++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA-P----------------------------------- 201 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHH----HHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEA----EDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~----~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....+++++++.|. +.|..++.++++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~ 257 (261)
T PRK03580 202 LAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPV 257 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 14446788888877788999998886 48888999999999999999987654
No 127
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=5.1e-10 Score=110.01 Aligned_cols=93 Identities=24% Similarity=0.199 Sum_probs=81.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.++|+++++. |+
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 200 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAF--PQ---------------------------------- 200 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|++++.....++++++..|...+..++. +++++++.+|+++++
T Consensus 201 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 201 TCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 1444678888887777899999999998888887 999999999998765
No 128
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.06 E-value=3.2e-09 Score=104.51 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=97.9
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccccCCCEEEEecccc
Q 009963 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKDVDMVIEAIIEN 237 (521)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~aDlVIeav~e~ 237 (521)
|.+||.+|+++||+|++||+++++++... .+.+.+.|.. .+++ .+.+++||+||.|+|..
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA~-------------~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGVK-------------VVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCCe-------------ecCCHHHHHhCCCEEEEecCCH
Confidence 88999999999999999999987654211 1112233421 2233 46688999999999977
Q ss_pred hhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhc----CCCceeecccccccC--CCCeE--E------EEeCCCC
Q 009963 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY----SKDRIVGAHFFSPAH--VMPLL--E------IVRTNQT 303 (521)
Q Consensus 238 ~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~----~~~r~ig~hf~~P~~--~~~lv--e------iv~~~~t 303 (521)
..++ +++..+.+.++++++++ ++||+++..+...+. ...+-+|+..|.|.. .++.= - .......
T Consensus 93 aaV~-eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGTF-SIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHHH-HHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 6554 45577888889999886 577888775544332 122334544444432 22211 1 1222346
Q ss_pred cHHHHHHHHHHHHhcCCeEEEec
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+++.++++.++.+..|+.+.++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 78999999999999999999885
No 129
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=4.6e-10 Score=110.74 Aligned_cols=95 Identities=21% Similarity=0.218 Sum_probs=83.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|| ++++.+++.+++++++.. |+
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~--~~---------------------------------- 204 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQK--PL---------------------------------- 204 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 57899999999999999999999 788999999999999875 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++.+..|.+.+..++.|+++++++.+|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~ 256 (260)
T PRK07659 205 KAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPV 256 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCC
Confidence 1445688888887778899999999999999999999999999999988654
No 130
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.06 E-value=7.1e-10 Score=110.08 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=110.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (521)
+||+|||+|.||.++|..|+++|++|++|.++++..++.... +.+- ++.. |.. ....+..++|++ .+++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~-~yLp-~i~-------lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENP-KYLP-GIL-------LPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCc-cccC-Ccc-------CCcccccccCHHHHHhc
Confidence 689999999999999999999999999999999988774432 1110 0111 111 224567788875 4677
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc------HHHHHHhhcCCCceeecccccccC-------CCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID------LNLIGERTYSKDRIVGAHFFSPAH-------VMP 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~------i~~ia~~~~~~~r~ig~hf~~P~~-------~~~ 293 (521)
||+|+.+||.. .-+.+++++...+++++++++.+-++. ++++....- |...++ +.+.|+ ..|
T Consensus 72 ad~iv~avPs~--~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l-~~~~~~--vLSGPs~A~EVa~g~p 146 (329)
T COG0240 72 ADIIVIAVPSQ--ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEEL-PDNPIA--VLSGPSFAKEVAQGLP 146 (329)
T ss_pred CCEEEEECChH--HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHc-CCCeEE--EEECccHHHHHhcCCC
Confidence 99999999976 467888888888899999988876543 345444321 211122 223332 244
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
...++.+ .+++..+.++.+|..--..+....|..|
T Consensus 147 ta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 147 TAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred cEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 4444555 4677777788887774455555556544
No 131
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.06 E-value=6.1e-10 Score=109.61 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=83.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 205 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS-S----------------------------------- 205 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
.+...+|+.++.....++++.+..|.+.+..++.|+++++++.+|.+||+
T Consensus 206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 14457889998887888999999999999999999999999999998764
No 132
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.05 E-value=5.7e-10 Score=110.37 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=81.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (265)
T PRK05674 164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS-P----------------------------------- 207 (265)
T ss_pred HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~-E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++.. |.+.+..++.|+++++++.+|+++|+++
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~ 260 (265)
T PRK05674 208 QALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPA 260 (265)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCC
Confidence 144467888888877888888765 5568888999999999999999987643
No 133
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.02 E-value=5.6e-10 Score=110.04 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=78.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+++.++|++++.. |+
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 204 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQK--SP---------------------------------- 204 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++..... .+..+..|.+.+..++.|+++++++.+|++||+++
T Consensus 205 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 255 (259)
T TIGR01929 205 MAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD 255 (259)
T ss_pred HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 1344677777765432 35556678889999999999999999999988654
No 134
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.02 E-value=3.8e-08 Score=98.86 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=129.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH---H-----HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR---V-----RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~---i-----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
.+|+|||+|-+|-.+|..++++|++|+.+|+|+.+.+..... | ...+...++. ++++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~------------g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVES------------GKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhc------------CCceEec
Confidence 799999999999999999999999999999999988765321 1 1112223333 4577899
Q ss_pred CcccccCCCEEEEecccch--------hhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcC--CCceeecccc-
Q 009963 220 DYESFKDVDMVIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS--KDRIVGAHFF- 286 (521)
Q Consensus 220 ~~~~~~~aDlVIeav~e~~--------~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~--~~r~ig~hf~- 286 (521)
+.+.++.||++|.|||... ..-.+..+.+.+.+.++.+++--+++.| .+++..-+-. +.=..+--|+
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 9999999999999998543 3344556678999999987764333322 2344332211 1111222222
Q ss_pred --cccCCCC---eEE------EEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcc-cc---hhh----chHHHHHHHHHHH
Q 009963 287 --SPAHVMP---LLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT-GF---AVN----RMFFPYTQAAFLL 347 (521)
Q Consensus 287 --~P~~~~~---lve------iv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~-Gf---i~n----Ril~~~~~ea~~l 347 (521)
+|-..+| +.| |+.| .+++..+.+..+.+.+=+..+.+.+.. .. +.. -+-.++.||-..+
T Consensus 158 aysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 158 AYSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred eeCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 5554432 222 4444 578888888888888766666665421 21 222 2445788997776
Q ss_pred H-HcCCCHHH-HHHHHH
Q 009963 348 V-ERGTDLYL-IDRAIT 362 (521)
Q Consensus 348 ~-~~G~~~~~-ID~a~~ 362 (521)
. +.|++..+ |+.|-+
T Consensus 236 ~~~~GIdvwevIeaAnt 252 (436)
T COG0677 236 CNAMGIDVWEVIEAANT 252 (436)
T ss_pred HHHhCCcHHHHHHHhcc
Confidence 6 57997655 555544
No 135
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.02 E-value=5.7e-10 Score=101.48 Aligned_cols=105 Identities=23% Similarity=0.292 Sum_probs=75.9
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDV 227 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 227 (521)
||+|||+|.||.++|..|+++|++|++|.++++.++...+. .......+. ......+..++|+ +.++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~--------~~n~~~~~~--~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET--------RQNPKYLPG--IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH--------TSETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh--------CCCCCCCCC--cccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999877664321 000000000 1122356677887 468999
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
|+||.+||..- -+.+++++.+++++++++++.+-++
T Consensus 71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999774 4789999999999999998887665
No 136
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.02 E-value=8.9e-10 Score=109.47 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=78.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.+.++|++++.. |+
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 214 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQN--SP---------------------------------- 214 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.... ..+.....|.+.+..++.|+++++++.+|++||+++
T Consensus 215 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 265 (273)
T PRK07396 215 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPD 265 (273)
T ss_pred HHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCC
Confidence 134467777776543 345555678889999999999999999999988764
No 137
>PLN02712 arogenate dehydrogenase
Probab=99.01 E-value=7.8e-09 Score=114.30 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=104.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (521)
-++|+|||+|.||..+|..|.++|++|++||++... +.+. +.|. ....+.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~Gv-------------~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLGV-------------SFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcCC-------------EEeCCHHHHhh
Confidence 358999999999999999999999999999998543 2211 1121 12334433 3
Q ss_pred cCCCEEEEecccchhhHHHHHHHHH-hhCCCCceEEecCCcCc--HHHHHHhhcCCCceeecccccccCC-----CCeEE
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLLE 296 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~-~~~~~~~il~sntS~l~--i~~ia~~~~~~~r~ig~hf~~P~~~-----~~lve 296 (521)
.+||+||.|+|.. .-..++.++. +.++++++|++.+|... +..+...++...+|+|.||+..++. .....
T Consensus 107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 4699999999964 3467777775 56788999988776542 3445555544457999999865541 11112
Q ss_pred EEe-----CCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 297 IVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 297 iv~-----~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+.. .+....+.++.+.++++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 223334567788899999999999886
No 138
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.00 E-value=1.1e-09 Score=108.18 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=80.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 203 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhh-CCh-HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~-~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.... .+. +..++.|.+.+..++.|+++++++.+|++||+++
T Consensus 204 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~ 257 (261)
T PRK11423 204 LAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPV 257 (261)
T ss_pred HHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCC
Confidence 144467888876543 333 5778889999999999999999999999988654
No 139
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.00 E-value=1.2e-09 Score=108.65 Aligned_cols=96 Identities=23% Similarity=0.196 Sum_probs=78.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||+++++++|.++|++++..+ |
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 217 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS-R----------------------------------- 217 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhC-ChHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~-~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++..... ++++.+..|..... .++.|+++++++.+|++||+++
T Consensus 218 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~ 271 (276)
T PRK05864 218 PGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPV 271 (276)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 1444678888776554 68888887875432 3578999999999999987654
No 140
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.00 E-value=1.5e-09 Score=108.02 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=80.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||+++|++.|.+++++++..+ |
T Consensus 168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 211 (275)
T PRK09120 168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN-P----------------------------------- 211 (275)
T ss_pred HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~--~f~~l~~s~-~a~~~~~aF~~kr~ 130 (521)
.+...+|+.++.....++++++..|.+ .+..++.++ ++++++.+|+++|.
T Consensus 212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 144578899998888889999888764 455678898 89999999999887
No 141
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.98 E-value=2e-08 Score=93.38 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=103.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
|++++|+|+|.||+++|..|+++||+|++-.++.+ +++.+.+. ....++.....++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~---------------------l~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA---------------------LGPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh---------------------hccccccCChHHHHh
Confidence 57899999999999999999999999999966544 44433211 112344555667789
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC----------------cHH-HHHHhhcCCCceeeccccc-
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLN-LIGERTYSKDRIVGAHFFS- 287 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l----------------~i~-~ia~~~~~~~r~ig~hf~~- 287 (521)
.||+||.+||-. --..+.+++...+. +.|+++.|-.+ +.+ .++..+++. +++.. |.+
T Consensus 60 ~aDVVvLAVP~~--a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkA-Fn~i 134 (211)
T COG2085 60 LADVVVLAVPFE--AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKA-FNTI 134 (211)
T ss_pred cCCEEEEeccHH--HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhh-hccc
Confidence 999999999854 34577788877665 77777665432 122 334444433 44432 321
Q ss_pred --------ccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 288 --------PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 288 --------P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
+.......-.+++ -+.++.+.+.++.+.+|..|+.++.
T Consensus 135 ~a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 135 PAAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred CHHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence 1111334445566 3778889999999999999999874
No 142
>PLN02921 naphthoate synthase
Probab=98.98 E-value=1.5e-09 Score=110.03 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=77.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++++.+||++++..+ |
T Consensus 225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 268 (327)
T PLN02921 225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS-P----------------------------------- 268 (327)
T ss_pred HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++..... .+.....|.+.+..++.|+++++++.+|++||+++.
T Consensus 269 ~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 269 TAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 1444678888766443 333334455888899999999999999999887653
No 143
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.97 E-value=1.4e-08 Score=107.22 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=120.3
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----ccCCCEEEEe
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 233 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlVIea 233 (521)
||..||.+|+++|++|.+||+++++.+...+. .|. . ..+....++++ ++.+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999988764320 110 0 01223344433 3358999999
Q ss_pred cccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--HHHHhhcCCCceeecccc-cccCC-------CCeEEEEeCCCC
Q 009963 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT 303 (521)
Q Consensus 234 v~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--~ia~~~~~~~r~ig~hf~-~P~~~-------~~lveiv~~~~t 303 (521)
||....+. +++..+.+.+.++.|+++.+++.+-+ +.++.+.. .|.||+ .|+.. .+ .+++| .
T Consensus 62 v~~g~~v~-~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~G--G 132 (459)
T PRK09287 62 VKAGAPVD-AVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPG--G 132 (459)
T ss_pred CCCchHHH-HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEe--C
Confidence 99887664 55678888888888887654333322 33333321 366665 35443 34 34444 3
Q ss_pred cHHHHHHHHHHHHhcCCeE-------EEecC-cccc----hhhchHHHH---HHHHHHHHH--cCCCHHHHHHHHH
Q 009963 304 SPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF----AVNRMFFPY---TQAAFLLVE--RGTDLYLIDRAIT 362 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~-------vvv~d-~~Gf----i~nRil~~~---~~ea~~l~~--~G~~~~~ID~a~~ 362 (521)
++++++.++++++.++..+ .++++ ..|. +.|-|...+ +.|++.+++ .|++++++-+++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7899999999999999776 77875 3343 334455443 689999887 4889999988886
No 144
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.96 E-value=3.5e-09 Score=98.73 Aligned_cols=108 Identities=24% Similarity=0.270 Sum_probs=72.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV--------RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (521)
|||+|||+|.+|..+|.+|+.+|++|+.+|+|++.++...+.. ...+.+..+ -.++.+++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence 6999999999999999999999999999999999887754211 111111111 24677888
Q ss_pred Cccc-ccCCCEEEEecccc--------hhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 220 DYES-FKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 220 ~~~~-~~~aDlVIeav~e~--------~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
+.+. +.+||++|.|||.. +..-.++...|.+.++++.+++ .-||+++.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppG 125 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPG 125 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTT
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEe
Confidence 8765 89999999999743 3345667788889999988775 56677664
No 145
>PRK08321 naphthoate synthase; Validated
Probab=98.96 E-value=2e-09 Score=108.40 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=79.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 243 (302)
T PRK08321 200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS-P----------------------------------- 243 (302)
T ss_pred HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++..... ..+....|.+.+..++.++++++++.+|+++|++.
T Consensus 244 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~ 294 (302)
T PRK08321 244 TAMRMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPD 294 (302)
T ss_pred HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCC
Confidence 1444677888765443 34445568999999999999999999999988755
No 146
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.95 E-value=2.2e-09 Score=105.60 Aligned_cols=95 Identities=19% Similarity=0.275 Sum_probs=75.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 201 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS-P----------------------------------- 201 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....+... ...|.+.+..++.|+++++++.+|++||+++
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~ 252 (256)
T TIGR03210 202 TAIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPE 252 (256)
T ss_pred HHHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence 13446777777654332111 1235678888999999999999999988654
No 147
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.93 E-value=3e-09 Score=105.06 Aligned_cols=92 Identities=23% Similarity=0.226 Sum_probs=75.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~--~~---------------------------------- 210 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAH--AP---------------------------------- 210 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++..... .+..+.+.+..++.++++++++.+|+++|+++
T Consensus 211 ~a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~ 258 (262)
T PRK06144 211 LTLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPK 258 (262)
T ss_pred HHHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Confidence 1344567777765433 34556678889999999999999999987654
No 148
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.93 E-value=4.8e-10 Score=103.56 Aligned_cols=51 Identities=8% Similarity=-0.103 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 518 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
=|++|||.|+++||+|+++.|+||-+||| .+|.+|+|||||||++.|.+|=
T Consensus 201 FIVNRlLiPyl~ea~r~yerGdAskeDID--taMklGagyPMGPfEL~DyvGL 251 (298)
T KOG2304|consen 201 FIVNRLLIPYLMEAIRMYERGDASKEDID--TAMKLGAGYPMGPFELADYVGL 251 (298)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCcHhhHH--HHHhccCCCCCChHHHHHHhhH
Confidence 49999999999999999999999999999 9999999999999999999983
No 149
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.92 E-value=3.1e-09 Score=104.29 Aligned_cols=91 Identities=16% Similarity=0.240 Sum_probs=77.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++.+++.+++++++.. |+
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 204 (251)
T PRK06023 161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAK--PP---------------------------------- 204 (251)
T ss_pred HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 478999999999999999999999999999999999999875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~k 128 (521)
.+...+|++++... .++.+.+..|.+.+..++.++++++++++|+++
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 205 QALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 13446778887653 468888999999999999999999999999863
No 150
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.92 E-value=3.6e-09 Score=87.74 Aligned_cols=91 Identities=22% Similarity=0.248 Sum_probs=67.4
Q ss_pred EEEEEeCChhhHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
||+|||+|.||.+|+..|.++| ++|.++ +++++++++..++ .+ ..+...+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence 7999999999999999999999 899966 9999988764321 11 111111334667
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+++|+||.|||.. .-.+++.++ ....++.+++|.++
T Consensus 60 ~~advvilav~p~--~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVKPQ--QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S-GG--GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEECHH--HHHHHHHHH-hhccCCCEEEEeCC
Confidence 8999999999765 346788888 66678888888764
No 151
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.91 E-value=6e-08 Score=103.02 Aligned_cols=204 Identities=17% Similarity=0.215 Sum_probs=126.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
++||+|||+|.+|..+|..|+++| ++|+++|+++++++...+.. +..++.+++++ .-.++.++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 368999999999999999999985 78999999999988754221 11111111110 1124778888
Q ss_pred cc-cccCCCEEEEecccch-------------hhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeec
Q 009963 221 YE-SFKDVDMVIEAIIENV-------------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (521)
Q Consensus 221 ~~-~~~~aDlVIeav~e~~-------------~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~ 283 (521)
++ .+++||++|.|||... .--..+.++|.++++++.+++ ..||+++. .+...+....+ |.
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~--g~ 148 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI 148 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCC--CC
Confidence 75 5899999999996332 244567788889999888765 45565553 33332211100 22
Q ss_pred cc---ccccCCC---------CeEEEE-eCC--CCcHHHHHHHHHHHHhcCC-eEEEecCc--c---cchhhchH---HH
Q 009963 284 HF---FSPAHVM---------PLLEIV-RTN--QTSPQVIVDLLDIGKKIKK-TPIVVGNC--T---GFAVNRMF---FP 339 (521)
Q Consensus 284 hf---~~P~~~~---------~lveiv-~~~--~t~~e~~~~~~~l~~~lGk-~~vvv~d~--~---Gfi~nRil---~~ 339 (521)
.| ++|-... ..--|| .+. ...+++.+.+.++...+-+ .++.+.+. . -++.|-.. .+
T Consensus 149 ~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia 228 (473)
T PLN02353 149 NFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS 228 (473)
T ss_pred CeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 22 2443221 112243 443 1225577888888887742 45555431 1 12344332 36
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 009963 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (521)
Q Consensus 340 ~~~ea~~l~~-~G~~~~~ID~a~~ 362 (521)
++||-..+.+ .|+++.+|-.++.
T Consensus 229 f~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 229 SVNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhC
Confidence 7899888775 5999999888886
No 152
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.91 E-value=2.6e-09 Score=104.54 Aligned_cols=92 Identities=25% Similarity=0.355 Sum_probs=82.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|++|+++||||+|+|++++.+.+.+++++++.. |.
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~--~~---------------------------------- 197 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAK--PP---------------------------------- 197 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTS--CH----------------------------------
T ss_pred cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcC--CH----------------------------------
Confidence 468999999999999999999999999999999999999886 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~k 128 (521)
.+...+|+.++........+.+..|.+.|..++.++++++++++|++|
T Consensus 198 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 198 SALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 134468888888888889999999999999999999999999999986
No 153
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.91 E-value=3.1e-08 Score=101.65 Aligned_cols=173 Identities=14% Similarity=0.147 Sum_probs=108.8
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-c
Q 009963 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (521)
+.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+.-. . .. .+. .. .....++..+++.+ .
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~-~-----~~-~l~-~~-~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHR-N-----SR-YLG-ND-VVLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCC-C-----cc-cCC-CC-cccCCCeEEECCHHHH
Confidence 34579999999999999999999999 79999999987765432100 0 00 000 00 01112455566664 5
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH------H-HHHHhhcCCCce-eecccccccC---CC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------N-LIGERTYSKDRI-VGAHFFSPAH---VM 292 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i------~-~ia~~~~~~~r~-ig~hf~~P~~---~~ 292 (521)
+.++|+||.|||.. .-+.+++++.+.++++++++|.+.++.. + .+.+.++. .++ +-..|..+.+ ..
T Consensus 75 ~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 75 ANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGY 151 (341)
T ss_pred HhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCC
Confidence 78999999999854 3567889999989888877777767764 2 34444432 121 1111211111 22
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccch
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFA 332 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi 332 (521)
+...++... +++..+.+.+++..-+..+....|..|..
T Consensus 152 ~t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve 189 (341)
T PRK12439 152 AAAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVE 189 (341)
T ss_pred CeEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHH
Confidence 322333332 56778888888888887777777765543
No 154
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.91 E-value=4.5e-09 Score=105.66 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=78.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||++++++.|.+++++++....|
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~----------------------------------- 221 (296)
T PRK08260 177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSP----------------------------------- 221 (296)
T ss_pred HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence 578999999999999999999999999999999999998873112
Q ss_pred chHHHHHHHHHHhhhCC-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 81 THPIVCIDVVEAGVVSG-PRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~-~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
.+...+|++++...... ..+....|.+.+..++.++++++++.+|+++|++..
T Consensus 222 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f 275 (296)
T PRK08260 222 VSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVF 275 (296)
T ss_pred HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCC
Confidence 14446788887764221 223446688899999999999999999999887654
No 155
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.90 E-value=2.8e-09 Score=104.49 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=79.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|| ++++++|.++|++++..+ |
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP-R----------------------------------- 200 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 57899999999999999999999 679999999999998852 2
Q ss_pred chHHHHHHHHHHhhh-CChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 009963 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~k 128 (521)
.+...+|+.++.... .++++++..|.+.+..++.|+++++++++|+++
T Consensus 201 ~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 201 ELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 245578889988777 789999999999999999999999999999863
No 156
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.89 E-value=5.2e-09 Score=103.46 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=80.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+||+ ++.+.+.+++++++..+ |
T Consensus 166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~-~----------------------------------- 207 (262)
T PRK07509 166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS-P----------------------------------- 207 (262)
T ss_pred HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 578999999999999999999995 37889999999988752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.....++++++..|.+.+..++.++++++++.+|+++|++.
T Consensus 208 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 259 (262)
T PRK07509 208 DAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK 259 (262)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 1445678888888778899999999999999999999999999999987643
No 157
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.88 E-value=9.8e-09 Score=89.20 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=72.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
-.||+|||+|.+|..++..|.++|++|..+ .++++..+++...+ ......+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------ccccccccccccc
Confidence 469999999999999999999999998665 67776666543211 1111122235578
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhh--CCCCceEEecCCcCcHHHHHHhhcCCCceeeccc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 285 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~--~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf 285 (521)
++|+||.+||++ .-..+.++|... ..++.|++=.+-+++.+-+.....+......+||
T Consensus 68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999988 346888888876 6788888754445666666655555556677775
No 158
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.88 E-value=7.9e-09 Score=101.22 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=79.4
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||.+ +++++.|.++|++++.. |+
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~--~~---------------------------------- 192 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNG--PF---------------------------------- 192 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 4789999999999999999963 35788999999999875 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+++
T Consensus 193 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 244 (248)
T PRK06072 193 QSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK 244 (248)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence 1444678888887778899999999999999999999999999999988654
No 159
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.85 E-value=8.1e-09 Score=102.34 Aligned_cols=92 Identities=20% Similarity=0.166 Sum_probs=71.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.++|++++.. |+
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 213 (268)
T PRK07327 170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAG--SQ---------------------------------- 213 (268)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcC--CH----------------------------------
Confidence 578999999999999999999999999999999999999885 21
Q ss_pred chHHHHHHHHHHhhh---CChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.... .+++..+..|. .++.|+++++++.+|++||+++
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~~d~~eg~~af~ekr~p~ 264 (268)
T PRK07327 214 TAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFSGPDVREGLASLREKRAPD 264 (268)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHccChhHHHHHHHHHhcCCCC
Confidence 133456777765421 23555555443 4678999999999999988654
No 160
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.84 E-value=1.5e-08 Score=99.34 Aligned_cols=94 Identities=16% Similarity=0.294 Sum_probs=75.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHH-HHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~-a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|+|||++++|+||+++||||+|+++. .+.+.++ +++++..+ |
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~--~~~a~~~~a~~la~~~-p---------------------------------- 194 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDP--ENAALAWFDEHPAKLS-A---------------------------------- 194 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcH--HHHHHHHHHHHHHhCC-H----------------------------------
Confidence 57899999999999999999999754 3566676 57777642 2
Q ss_pred CchHHHHHHHHHHhhhCChHHHH-HHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGL-QKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l-~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.....++++++ ..|.+.+..++.|+++++++.+|++||++.
T Consensus 195 -~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~ 247 (251)
T TIGR03189 195 -SSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPAL 247 (251)
T ss_pred -HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCC
Confidence 1444678888877777777776 478889999999999999999999988754
No 161
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.83 E-value=1.1e-08 Score=100.58 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=75.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|||+++. .+.+++++++..+ |
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~-p----------------------------------- 200 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN-K----------------------------------- 200 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999987653 5777888887752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|++++.. ..++++++..|.+.+..++.|+++++++.+|+++|++.
T Consensus 201 ~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~ 251 (255)
T PRK07112 201 AAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFP 251 (255)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCC
Confidence 1444677887764 44688899999999999999999999999999987643
No 162
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.81 E-value=1.4e-08 Score=100.18 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=81.0
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||++++ ++.+.+.+++++++.. |+
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~--~~---------------------------------- 205 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRG--SP---------------------------------- 205 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999974 5899999999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~ 131 (521)
.+...+|+.++.....++++.++.|.+.+..++.++++++++.+|.++|++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p 256 (260)
T PRK07827 206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPP 256 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence 245578899988888889999999999999999999999999999988754
No 163
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.81 E-value=1.3e-08 Score=102.62 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=69.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||.++|..++..|+ +|+++|++++. .++.. .+.++ .+ .......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a--~d~~~----~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI-PQGKA--LDMYE----AS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHH--Hhhhh----hh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 89999998663 33321 11111 11 01112347777888988999
Q ss_pred CCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.++. .|..+-+++.+++.++. ++++++..|
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~t 118 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVS 118 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 999999986 23345556667777775 455544333
No 164
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.80 E-value=7.5e-09 Score=105.90 Aligned_cols=130 Identities=17% Similarity=0.108 Sum_probs=82.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHH-----------hhhccCCCcchhhc-------ccCCCCCchHH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL-----------DILEHRRPWVATLY-------KTDKIEPLGEA 62 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~-----------~l~~~~~p~~~~~~-------~~~~~~~~~~~ 62 (521)
|+|||++++|++|+++||||+|||++++.+...+++. .+...-....+... ....+... ..
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 241 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD-TV 241 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC-CH
Confidence 5789999999999999999999999888776443331 01000000000000 00000000 00
Q ss_pred HHHHH--------HHHHHHHHh-CCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHH-hh-ccC
Q 009963 63 REIFK--------FARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ-RGT 131 (521)
Q Consensus 63 ~~~~~--------~a~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~-~k-r~~ 131 (521)
..++. .+.+.+.+- .+++.+...+|++++.+...+++++++.|.+.+..++.++++++++++|+ +| |.+
T Consensus 242 ~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p 321 (342)
T PRK05617 242 EDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP 321 (342)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence 00111 122233332 23566889999999998888999999999999999999999999999997 55 443
No 165
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.78 E-value=1.4e-07 Score=95.26 Aligned_cols=167 Identities=15% Similarity=0.132 Sum_probs=98.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccc-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES-FK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~-~~ 225 (521)
+||+|||+|.||..+|..|+++|++|+++++ ++.++... +.|. +.....+.. -....+++.+. ..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDAV-VPGPVITDPEELTG 67 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeEE-ecceeecCHHHccC
Confidence 4899999999999999999999999999999 66655432 1121 000000000 01112334433 48
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhcCCCcee-ecccc-----cccCC----CCe
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFF-----SPAHV----MPL 294 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~~~~r~i-g~hf~-----~P~~~----~~l 294 (521)
++|+||.|++... -..+++++.+.++++++|++...++.. +.+...++. .+++ |+.++ .|-.. ...
T Consensus 68 ~~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~ 144 (305)
T PRK12921 68 PFDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR 144 (305)
T ss_pred CCCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence 8999999998653 356778888888888877766667654 445554432 2444 33333 22111 011
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
+.+-..+....+..+.+.+++...|.......|...
T Consensus 145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 180 (305)
T PRK12921 145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQ 180 (305)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHH
Confidence 112111223345666777888888866566556433
No 166
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.78 E-value=2.3e-08 Score=97.65 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=75.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|++ + +.+.+++++++.. |+
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~--~~---------------------------------- 189 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGL--AP---------------------------------- 189 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999975 2 3789999998875 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.+...+|+.++.. .++++++..|.+.+..++.++++++++.+|+++|++.
T Consensus 190 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 239 (243)
T PRK07854 190 LALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPK 239 (243)
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCC
Confidence 1444678888765 5688999999999999999999999999999987654
No 167
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.78 E-value=2.3e-08 Score=97.95 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=79.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|++|+++||||+|||++++++.|.++|+++++. |+
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~---------------------------------- 201 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEK--PR---------------------------------- 201 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhC--CH----------------------------------
Confidence 578999999999999999999999999999999999999875 22
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF 125 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF 125 (521)
.+...+|+.++.....+++++++.|.+.|..++.|+++++++...
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~ 246 (249)
T PRK07110 202 HSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL 246 (249)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence 144478899998888899999999999999999999999998764
No 168
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.77 E-value=3.4e-07 Score=92.92 Aligned_cols=171 Identities=10% Similarity=0.111 Sum_probs=102.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.+||+|||+|.||+.+|..|+++|++|+++.++.. +... +.|. +....-+.....+...++.+...
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDMP 71 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhcC
Confidence 46899999999999999999999999999999853 2211 1121 00000000001122233444567
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcCCCceee-cccc-----cccC---C-CCe
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG-AHFF-----SPAH---V-MPL 294 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~~~r~ig-~hf~-----~P~~---~-~~l 294 (521)
.+|+||.||+... + .+++..+.+.+.+++++++...++... .+...++ +.++++ ..++ .|.. . ..-
T Consensus 72 ~~D~vilavK~~~-~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g~ 148 (313)
T PRK06249 72 PCDWVLVGLKTTA-N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYGR 148 (313)
T ss_pred CCCEEEEEecCCC-h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCCc
Confidence 8999999998653 2 467888888888888887777777664 4554543 334443 3332 2321 1 111
Q ss_pred EEEEeCCCCc-----HHHHHHHHHHHHhcCCeEEEecCcccchh
Q 009963 295 LEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTGFAV 333 (521)
Q Consensus 295 veiv~~~~t~-----~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~ 333 (521)
+.+-.....+ .+.++.+.++++..|....+..|....+.
T Consensus 149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W 192 (313)
T PRK06249 149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARW 192 (313)
T ss_pred EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHH
Confidence 2222111222 45667788888988887777676555433
No 169
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.77 E-value=1.3e-07 Score=88.80 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=82.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+ |.||.-++..|.++|++|+ +.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECC
Confidence 48999999 9999999999999999985 136
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCC-----CeEEEEeCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-----PLLEIVRTN 301 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~-----~lveiv~~~ 301 (521)
||+||.|+|.+.. .++++++. .++++.+|+.. .+.+. ..+|+|.||+..+... ..+ ++..+
T Consensus 32 ~DlVilavPv~~~--~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~-iv~~~ 97 (197)
T PRK06444 32 ADHAFLSVPIDAA--LNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTV-IFIND 97 (197)
T ss_pred CCEEEEeCCHHHH--HHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceE-EEECC
Confidence 8999999997642 35555543 36778887764 23332 3479999998653321 222 33466
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
.++++.++.+.++++ |..++.+.
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEeC
Confidence 788888889999988 77777765
No 170
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.75 E-value=3.2e-08 Score=97.91 Aligned_cols=98 Identities=26% Similarity=0.406 Sum_probs=75.7
Q ss_pred EEEEeC-ChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccc
Q 009963 150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES 223 (521)
Q Consensus 150 I~VIG~-G~mG~~iA~~la~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 223 (521)
|+|||+ |.||.+++..++..| .+|+++|+++++++.....+++..... ...++..++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988776554443322110 1235666677 688
Q ss_pred ccCCCEEEE--------------ecccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 224 ~~~aDlVIe--------------av~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
+++||+||+ .+.++..+++++++++.+++ |++++...
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~ 118 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV 118 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 999999999 66788889999999999998 55555433
No 171
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.74 E-value=1.2e-07 Score=96.84 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=99.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhcccccccCcc-cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
+||+|||+|.||+.+|..|+++|++|++|+++++.++...+. ..+. +.. ......+..+++++ .+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~---~~~~~~i~~~~~~~~~~ 68 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPT---CHLPDNISVKSAIDEVL 68 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCC---CcCCCCeEEeCCHHHHH
Confidence 379999999999999999999999999999998876653321 0010 000 00112344455554 34
Q ss_pred -cCCCEEEEecccchhhHHHHHHHHHh-hCCCCceEEecCCcCcH-------HHHHHhhcCCCceeeccccccc------
Q 009963 225 -KDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTIDL-------NLIGERTYSKDRIVGAHFFSPA------ 289 (521)
Q Consensus 225 -~~aDlVIeav~e~~~~k~~v~~~l~~-~~~~~~il~sntS~l~i-------~~ia~~~~~~~r~ig~hf~~P~------ 289 (521)
.++|+||.|||... -.++++++.+ .+++++++++.++++.. +.+...+++. ++.. +..|.
T Consensus 69 ~~~~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~--~~Gp~~a~~~~ 143 (326)
T PRK14620 69 SDNATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAI--LSGPSFAKEIA 143 (326)
T ss_pred hCCCCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEe--ecCCcHHHHHH
Confidence 58999999998653 4578888887 77888766666666633 2344444321 2110 00121
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchh
Q 009963 290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV 333 (521)
Q Consensus 290 ~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~ 333 (521)
...+..-.+.+ .+.+....+.+++..-+.......|.-|...
T Consensus 144 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~ 185 (326)
T PRK14620 144 EKLPCSIVLAG--QNETLGSSLISKLSNENLKIIYSQDIIGVQI 185 (326)
T ss_pred cCCCcEEEEec--CCHHHHHHHHHHHCCCCeEEEecCcchhhhh
Confidence 11221112233 3445566666777666666666667666543
No 172
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.73 E-value=4.3e-08 Score=96.47 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=79.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++++.|.+|+++++..+ |
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN-P----------------------------------- 201 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQ 128 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s---~~a~~~~~aF~~k 128 (521)
.+...+|++++.....+++++++.|...+..++.| +........|..+
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~ 252 (258)
T PRK06190 202 AAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMAR 252 (258)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence 14457889998888888999999999999999998 6777777777664
No 173
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.71 E-value=1.9e-07 Score=94.22 Aligned_cols=113 Identities=19% Similarity=0.137 Sum_probs=77.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|||+|.||+.+|..|+++|++|++++++++.++...+ .|. .-.+- .....+..+++.+.+.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~-~~~~~-~~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGL-RLEDG-EITVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCC-cccCC-ceeecccCCCChhHcCCC
Confidence 47999999999999999999999999999998877655321 121 00000 001112233444445899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH-HHHHHhhc
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTY 275 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i-~~ia~~~~ 275 (521)
|+||.|++... -..+++.+.+.+.+++++++...++.. +.+...+.
T Consensus 68 d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~ 114 (304)
T PRK06522 68 DLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIG 114 (304)
T ss_pred CEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcC
Confidence 99999998653 367888898888888877777777764 44555443
No 174
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=1.3e-06 Score=87.56 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=141.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (521)
..|||||+|+||+.+|..++++|+.|.+|+|+.++.+...+. .+. ..+|.++.++++
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHHH
Confidence 579999999999999999999999999999999998876532 110 113444444443
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH---HHhhcCCCceeecccccc---cCCCCeEEE
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI---GERTYSKDRIVGAHFFSP---AHVMPLLEI 297 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i---a~~~~~~~r~ig~hf~~P---~~~~~lvei 297 (521)
++.---|+.+|-.- .....++++|.+++.++.|+++...+.-.+.+ .+.....-.|||+----. +...| .|
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP--Si 141 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP--SI 141 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC--Cc
Confidence 45566777777544 22357789999999999999876555433322 222233345666543211 11111 24
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCC----e--EEEec-Ccccchh----hchHH---HHHHHHHHHHHcC--CCHHHHHHHH
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKK----T--PIVVG-NCTGFAV----NRMFF---PYTQAAFLLVERG--TDLYLIDRAI 361 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk----~--~vvv~-d~~Gfi~----nRil~---~~~~ea~~l~~~G--~~~~~ID~a~ 361 (521)
+|| .++++.+.+.+++..+.. . ..+++ +..|.++ |-|=. .++.|+..++.++ .|.++|-.++
T Consensus 142 MpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF 219 (473)
T COG0362 142 MPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVF 219 (473)
T ss_pred CCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 455 478888999998887631 2 23444 5667544 55543 4689999999875 4999999988
Q ss_pred HhcCCCccHHHHhhhcCchHHHHHhhHHHhhCCCCCccccHHHHHHHC
Q 009963 362 TKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQED 409 (521)
Q Consensus 362 ~~~g~p~GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (521)
..++- |.+ |..=+++..+++..-.+. .-.|+++..++.
T Consensus 220 ~~WN~--geL---~SYLIeIT~~IL~~kD~~-----~~kplvd~ILD~ 257 (473)
T COG0362 220 EEWNK--GEL---DSYLIEITADILRKKDEE-----GGKPLVDKILDK 257 (473)
T ss_pred HHhcc--Ccc---hHHHHHHHHHHHhhcCcc-----cCCchHHHHHHH
Confidence 75432 322 222344444554432111 112567766654
No 175
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.70 E-value=2.1e-07 Score=94.92 Aligned_cols=165 Identities=18% Similarity=0.093 Sum_probs=100.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 009963 149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (521)
||+|||+|.||.++|..++.+| ++|.+|.+ +++..+... .. .+....-+. -....++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in----~~----~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIIN----TT----HENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHH----hc----CCCccccCC--CcCCCCe
Confidence 6899999999999999999999 99999998 443322211 10 000000000 0123456
Q ss_pred ccccCcc-cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH--------HH-HHhhcCCCceeeccc
Q 009963 216 TGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--------LI-GERTYSKDRIVGAHF 285 (521)
Q Consensus 216 ~~~~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~--------~i-a~~~~~~~r~ig~hf 285 (521)
..++|++ .+++||+||.|||.. .-+.++.++.++++++.+++|.+-++..+ ++ .+.+..+ +. .
T Consensus 71 ~at~dl~eal~~ADiIIlAVPs~--~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~--~~---~ 143 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIPHQ--FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIP--CG---V 143 (342)
T ss_pred EEECCHHHHHhcCCEEEEECChH--HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCC--eE---E
Confidence 6778874 579999999999976 45688899999888888888887665443 22 2233222 11 1
Q ss_pred ccccC-------CCCeEEEEeCCCCc--HHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 286 FSPAH-------VMPLLEIVRTNQTS--PQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 286 ~~P~~-------~~~lveiv~~~~t~--~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
.+.|+ ..|...++.+...+ .+....+++++..--..+....|..|
T Consensus 144 lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 144 LSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred eeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 12221 22333344443222 67778888887764445555556444
No 176
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=98.69 E-value=7.3e-09 Score=86.17 Aligned_cols=51 Identities=8% Similarity=-0.113 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 467 LWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 467 i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
|++|++.+++|||++++++++++++||| .+++.+.|+|+|||+++|.+|-.
T Consensus 3 i~nRl~~~~~~ea~~l~~egvas~~~ID--~~~~~~~G~p~Gpf~l~D~~Gl~ 53 (97)
T PF00725_consen 3 IVNRLLAALLNEAARLVEEGVASPEDID--RAMRYGLGFPMGPFELADLVGLD 53 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTSSSHHHHH--HHHHHHHTHSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHH--HHHHHhCCCCCccchHHHHhCch
Confidence 5799999999999999999999999999 98999999999999999999853
No 177
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.67 E-value=1.7e-08 Score=92.52 Aligned_cols=91 Identities=23% Similarity=0.345 Sum_probs=65.5
Q ss_pred cccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCCc
Q 009963 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (521)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (521)
.+.+|.++|+||++|||||.|||.++|++++.+||+++.+++ |.
T Consensus 181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS-P~----------------------------------- 224 (282)
T COG0447 181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS-PT----------------------------------- 224 (282)
T ss_pred hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC-hH-----------------------------------
Confidence 467899999999999999999999999999999999998863 31
Q ss_pred hHHHHHHHHHHhhhCCh--HHHHH-HHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 82 HPIVCIDVVEAGVVSGP--RAGLQ-KEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 82 A~~~~~~~i~~~~~~~~--~~~l~-~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
++++++.+.+.+- -.++. ..-++-.-..+++|+++++.+|.+||.+.
T Consensus 225 ----AlR~LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pd 274 (282)
T COG0447 225 ----ALRMLKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPD 274 (282)
T ss_pred ----HHHHHHHHhcCCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCC
Confidence 2333333333221 12222 11222223467999999999999999874
No 178
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2.4e-06 Score=80.25 Aligned_cols=187 Identities=14% Similarity=0.180 Sum_probs=124.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+.||+|.||..|+..|.+.|++|+.||+|+++.+.+. +.|.......+.. ...+...
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga~~a~sl~el---------~~~L~~p 60 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGATGAASLDEL---------VAKLSAP 60 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCCccccCHHHH---------HHhcCCC
Confidence 4799999999999999999999999999999999988754 2331111111111 1234555
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHH--HhhcCCCceeeccccc-ccCC------CCeEEEE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG--ERTYSKDRIVGAHFFS-PAHV------MPLLEIV 298 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia--~~~~~~~r~ig~hf~~-P~~~------~~lveiv 298 (521)
-.|-.+||-. ++-.+++.++.+.+.++.++++...+.--+.+. ..+ .-.|+||+. ..+. ....-+|
T Consensus 61 r~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l----~~kgi~flD~GTSGG~~G~~~G~~lMi 135 (300)
T COG1023 61 RIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL----AEKGIHFLDVGTSGGVWGAERGYCLMI 135 (300)
T ss_pred cEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH----HhcCCeEEeccCCCCchhhhcCceEEe
Confidence 7788888865 356789999999999999888765544333222 222 124889983 1111 1233355
Q ss_pred eCCCCcHHHHHHHHHHHHhcCC---eEEEecC-cccch----hhchHHHH---HHHHHHHHHcC---CCHHHHHHHHH
Q 009963 299 RTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGFA----VNRMFFPY---TQAAFLLVERG---TDLYLIDRAIT 362 (521)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk---~~vvv~d-~~Gfi----~nRil~~~---~~ea~~l~~~G---~~~~~ID~a~~ 362 (521)
.| +.++++.+..+|+.+-- --.+++. ..|.+ -|-|=..+ +.|.+.++++. .+.++|-++++
T Consensus 136 GG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~ 210 (300)
T COG1023 136 GG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN 210 (300)
T ss_pred cC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 55 78999999999998753 2345554 34543 46555544 47888888765 36777777776
No 179
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.66 E-value=8.9e-08 Score=94.35 Aligned_cols=92 Identities=30% Similarity=0.431 Sum_probs=79.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (521)
|++||+.++|+||+++||||++|++ +++++.|.+++++++.. |.
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~~--~~--------------------------------- 206 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAAP--PL--------------------------------- 206 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHccC--HH---------------------------------
Confidence 5799999999999999999999985 69999999999998761 21
Q ss_pred CchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
+...+|..++.+...++++.+..|...+...+.++++++++.+|.+ |+
T Consensus 207 --a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~ 254 (257)
T COG1024 207 --ALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RK 254 (257)
T ss_pred --HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cC
Confidence 3446788888887667899999999999998899999999999998 44
No 180
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.64 E-value=6.8e-08 Score=91.21 Aligned_cols=104 Identities=26% Similarity=0.333 Sum_probs=73.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (521)
.||+|||+|.||+.||..|++.|+ +++++|.+ ++.+.+-... . ...|.-..+.+...+.++.+..+.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-----~--~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYK-----A--SQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCC-----h--hhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 589999999999999999999999 69999999 6665541100 0 1123322333344444444333222
Q ss_pred ------------cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 223 ------------SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 223 ------------~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
.++++|+||+| .++.+.|..++.++....+...+++
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 36789999999 7999999999999988877776665
No 181
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.62 E-value=3.8e-07 Score=93.72 Aligned_cols=171 Identities=15% Similarity=0.051 Sum_probs=102.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhcccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKF-LEAGIGRVRANLQSRVKK-GKMTQEKFEKTISLLTGV 218 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-------~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i~~~ 218 (521)
+||+|||+|.||.+||..++++| ++|.+|.++++. -.+..+.++.. ... ..+.. -....++..+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp~---~~Lp~ni~~t 84 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLPG---IKLPDNIVAV 84 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCCC---CcCCCceEEe
Confidence 68999999999999999999998 799999999862 01111111110 000 00100 0123567777
Q ss_pred cCcc-cccCCCEEEEecccchhhHHHHHHHHHh--hCCCCceEEecCCcCc--------HHHHH-HhhcCCCceeecccc
Q 009963 219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTID--------LNLIG-ERTYSKDRIVGAHFF 286 (521)
Q Consensus 219 ~~~~-~~~~aDlVIeav~e~~~~k~~v~~~l~~--~~~~~~il~sntS~l~--------i~~ia-~~~~~~~r~ig~hf~ 286 (521)
+|++ .+++||+||.|||.. .-+++++++.+ .++++++++|.+-++. ++++. +.+..+--++.. |.
T Consensus 85 sdl~eav~~aDiIvlAVPsq--~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsG-Ps 161 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIPHQ--FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSG-AN 161 (365)
T ss_pred cCHHHHHhcCCEEEEEcChH--HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEEC-CC
Confidence 7874 589999999999865 45788899887 7777878887765554 33333 233222111111 11
Q ss_pred cc---cCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 287 SP---AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 287 ~P---~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
.. +...|...++.+ .+.+....++++|..--..+....|..|
T Consensus 162 ~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 162 VANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred HHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 11 112343334444 3677777788887765555555556444
No 182
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.62 E-value=5.3e-08 Score=100.98 Aligned_cols=127 Identities=17% Similarity=0.205 Sum_probs=78.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHH----------HhhhccC-CCcch----hh----cccCCCCCchH
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEHR-RPWVA----TL----YKTDKIEPLGE 61 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a----------~~l~~~~-~p~~~----~~----~~~~~~~~~~~ 61 (521)
|+|||++++|++|+++||||+|||++++.+.+.++. +++...- .++.. .. .....+... .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence 578999999999999999999999988876332321 1111100 00000 00 000000000 0
Q ss_pred HHHHHHH------------HHHHHHHhC-CCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Q 009963 62 AREIFKF------------ARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF 125 (521)
Q Consensus 62 ~~~~~~~------------a~~~~~~~~-~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~a~~~~~aF 125 (521)
....++. +.+.++.-. +.+.+...+|++++.+...+++++++.|...+..++. ++++++++++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 0001111 122233322 3455888999999998888999999999888888877 99999999999
Q ss_pred H-hh
Q 009963 126 F-AQ 128 (521)
Q Consensus 126 ~-~k 128 (521)
+ +|
T Consensus 327 lidK 330 (379)
T PLN02874 327 VIDK 330 (379)
T ss_pred EEcC
Confidence 7 66
No 183
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.53 E-value=3.4e-07 Score=93.21 Aligned_cols=100 Identities=17% Similarity=0.058 Sum_probs=77.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||.++|..+...|++|++||++++..... +..+.++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 489999999999999999999999999999997542110 0112334 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~ 275 (521)
||+|+.++|...+.+..+.+++.+.+++++++++.+-+ +.-..+.+.+.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999999888778778888889999988755444 44456777664
No 184
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.52 E-value=6e-07 Score=79.97 Aligned_cols=103 Identities=27% Similarity=0.356 Sum_probs=67.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (521)
+||+|||+ |..|+.+|..+...++ ++.++|++++.++.-...+.+.... .+ ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~---~~----------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP---LP----------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG---ST----------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh---cc----------ccccccccccccc
Confidence 58999999 9999999999999876 8999999998665533333222100 00 0112223568999
Q ss_pred cCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 KDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 ~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
++||+||.+.-. +..+-+++...+.+.. ++++++..|..
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 999999988621 2223445556677777 55565544443
No 185
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.46 E-value=6.6e-06 Score=80.45 Aligned_cols=168 Identities=16% Similarity=0.100 Sum_probs=114.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEecccchhhHHHHHHHH
Q 009963 170 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 248 (521)
Q Consensus 170 G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l 248 (521)
-++|+++++++++++...+. .| +..+.+. +.+.+||+||.||+ +..-.+++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence 36899999999886553211 12 1122333 44688999999998 33456778888
Q ss_pred HhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEEE-EeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 249 EKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI-VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 249 ~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lvei-v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
...+.++.+|+|.++++++++|...++...+++.+.|+.|......+.. ..++..+++..+.+.++|..+|+...+-.+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~ 143 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEA 143 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHH
Confidence 7767778899999999999999988865457999999988877655554 467778888899999999999976654321
Q ss_pred -cccch-hhchH---HHHHHHHH--HHHHcCCCHHHHHHHHH
Q 009963 328 -CTGFA-VNRMF---FPYTQAAF--LLVERGTDLYLIDRAIT 362 (521)
Q Consensus 328 -~~Gfi-~nRil---~~~~~ea~--~l~~~G~~~~~ID~a~~ 362 (521)
-..+. ..-.. ..++.+++ ..+..|+++++-.+...
T Consensus 144 ~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 144 LMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11111 11111 11233333 34567888888777765
No 186
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.42 E-value=1.3e-05 Score=80.87 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=101.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||+|+|+|.||+-++..|+++|.+|+++-+++. +++.. +.|..-.............+.+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999988888888875 55432 22321100000011112223334567799
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHH-HHHhhcCCCceeecccccccCCC---------CeEEE
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL-IGERTYSKDRIVGAHFFSPAHVM---------PLLEI 297 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~-ia~~~~~~~r~ig~hf~~P~~~~---------~lvei 297 (521)
|+||.++-.- --.+++..+.+.++++++|.+.-.++...+ +....+...-+.|+-+..-.... .-+.+
T Consensus 69 Dlviv~vKa~--q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVKAY--QLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEeccc--cHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 9999998533 346788999999999998887777776554 55544333234444443211111 11222
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 298 v~~~~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
-......++..+.+.+.++..|....+..|
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 222223346778888888777766655544
No 187
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.39 E-value=3.5e-07 Score=83.81 Aligned_cols=97 Identities=23% Similarity=0.310 Sum_probs=82.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCc----hHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHh
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~----~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 76 (521)
+|+|||.+++.||.++||||.||... .....|+++|+++.... |
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g-P------------------------------- 235 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG-P------------------------------- 235 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC-c-------------------------------
Confidence 58999999999999999999999765 45556777777765532 2
Q ss_pred CCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCCC
Q 009963 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (521)
Q Consensus 77 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~k 133 (521)
-|+..+|-+|+.+.+.++..++.+|..-+.+...+.+--+++.+|.+||.+.-
T Consensus 236 ----iavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 236 ----IAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred ----hhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 25667889999999999999999999999999999999999999999987653
No 188
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.39 E-value=8.3e-07 Score=80.72 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=75.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||.||+++||+..|||.+|||+++|..++.+++..+-..++. .+.
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sra-------------------v~s------------- 235 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRA-------------------VIS------------- 235 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHH-------------------HHH-------------
Confidence 689999999999999999999999999999999998877553211 011
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccCC
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~~~ 132 (521)
.-|+-.+....++-.+++....+...+-+.-.+++++|.+||+||.+.
T Consensus 236 ----lgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~ 283 (287)
T KOG1682|consen 236 ----LGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN 283 (287)
T ss_pred ----HHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence 234555555566667777777778888888899999999999988653
No 189
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.39 E-value=9.8e-07 Score=89.23 Aligned_cols=101 Identities=23% Similarity=0.289 Sum_probs=67.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+++|..|+..| .+|+++|++++.++.....+.+.... .+. ...+. +.++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~---~~~---------~~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF---LPS---------PVKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc---cCC---------CeEEE-cCCHHHhC
Confidence 48999999999999999999999 58999999998876544333222100 000 00122 35677899
Q ss_pred CCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+||+||.++.. +..+-+++...+.++++ ++++...|
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvs 117 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVAS 117 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEec
Confidence 99999999843 22344556667777765 55554333
No 190
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.37 E-value=7.1e-07 Score=89.34 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=67.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 223 (288)
T PRK08290 180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP-P----------------------------------- 223 (288)
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999998852 2
Q ss_pred chHHHHHHHHHHhhhC-ChHHHHHHHHHHHHHHh-CCHH
Q 009963 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET 117 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~~l~-~s~~ 117 (521)
.+...+|+.++..... ++++++..|...+.... ++++
T Consensus 224 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 224 FGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 1444678888877665 68999999988888877 5665
No 191
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.37 E-value=3.9e-05 Score=72.81 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=99.1
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecccch
Q 009963 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV 238 (521)
Q Consensus 159 G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~ 238 (521)
|+.+|..|+.+||+|++.|.|.+-.+.. .+++..+.|. -..++|.++++.+.+.|.-.|=..
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAGV------------~vv~dD~eaa~~~Ei~VLFTPFGk 94 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAGV------------EVVSDDAEAAEHGEIHVLFTPFGK 94 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcCc------------EEecCchhhhhcceEEEEecccch
Confidence 7899999999999999999998765542 1222223331 112445678899999998877542
Q ss_pred hhHHHHHHHHHhhCCCCceEEecCCcCcHH----HHHHhhcCCCceeecccccccCC-----CCeEEEEeCC------CC
Q 009963 239 SLKQQIFADLEKYCPPHCILASNTSTIDLN----LIGERTYSKDRIVGAHFFSPAHV-----MPLLEIVRTN------QT 303 (521)
Q Consensus 239 ~~k~~v~~~l~~~~~~~~il~sntS~l~i~----~ia~~~~~~~r~ig~hf~~P~~~-----~~lveiv~~~------~t 303 (521)
. --.+.++|.++++++++|+ ||.|.|+- .+...+..+.+-+|...|.|+.+ .... ++.+. -.
T Consensus 95 ~-T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g~elA 171 (340)
T COG4007 95 A-TFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEGKELA 171 (340)
T ss_pred h-hHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCceeec
Confidence 1 2356778899999999886 55555543 33444555556677777766532 1122 23322 23
Q ss_pred cHHHHHHHHHHHHhcCCeEEEec
Q 009963 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
+++.++.+.++++..||.+.++.
T Consensus 172 TeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 172 TEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred cHHHHHHHHHHHHhcCCceEecC
Confidence 57889999999999999999886
No 192
>PRK15076 alpha-galactosidase; Provisional
Probab=98.32 E-value=2.8e-06 Score=89.58 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=54.5
Q ss_pred eEEEEEeCChhhHHHHH--HHH----hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-
Q 009963 148 KKVAILGGGLMGSGIAT--ALI----LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD- 220 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~--~la----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~- 220 (521)
+||+|||+|.||...+. .++ ..|.+|+++|+++++++.+...+++.+... + ...++..++|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence 69999999999966655 333 246799999999999886554444433221 1 1236777888
Q ss_pred cccccCCCEEEEecc
Q 009963 221 YESFKDVDMVIEAII 235 (521)
Q Consensus 221 ~~~~~~aDlVIeav~ 235 (521)
.+++++||+||+++-
T Consensus 70 ~eal~dADfVv~ti~ 84 (431)
T PRK15076 70 REALQGADYVINAIQ 84 (431)
T ss_pred HHHhCCCCEEeEeee
Confidence 578999999999973
No 193
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.31 E-value=2.4e-06 Score=85.22 Aligned_cols=90 Identities=16% Similarity=0.061 Sum_probs=70.5
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++||++++|+||+++||||+|||++++.+++.+++++++.. |.
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~~---------------------------------- 228 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--LN---------------------------------- 228 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--cc----------------------------------
Confidence 578999999999999999999999999999999999998864 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCC-HHHHHHHHHHHh
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS-ETCKSLVHIFFA 127 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s-~~a~~~~~aF~~ 127 (521)
++.++|+..+.....++++.++.|..++..++++ +..++-+..|..
T Consensus 229 -~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 229 -GWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 2334555555555567889999998888876654 455666777753
No 194
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.31 E-value=2.2e-06 Score=86.55 Aligned_cols=98 Identities=23% Similarity=0.333 Sum_probs=65.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
.||+|||+|.+|+++|..++..|. ++.|+|++++.++.-...+.+.. ... ....+..+.++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence 499999999999999999998886 79999999876554332222110 000 012455567899999
Q ss_pred CCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEE
Q 009963 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+||+||.+.-. +..+-+++...+.++++ ++++.
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p-~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSP-NAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEE
Confidence 99999986521 11234455566777754 44443
No 195
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.30 E-value=6.8e-06 Score=83.09 Aligned_cols=175 Identities=14% Similarity=0.030 Sum_probs=100.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+||+|||+|.||+-+|..|+++|++|++++++.+.++...+ +.|. +.... ....-.+. ..+.+....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g-~~~~~~~~-~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQG-QASLYAIP-AETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCC-cceeeccC-CCCcccccc
Confidence 58999999999999999999999999999998877665331 0111 10000 00000111 111233568
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcCCCceeecccc-----cccCC--CCeEEEE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGAHFF-----SPAHV--MPLLEIV 298 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~~~r~ig~hf~-----~P~~~--~~lveiv 298 (521)
+|+||.|+-.. ++ .+.++.+.+.+.+++++++.-.++... .+...+....-+.|..++ .|-.. ...-.+.
T Consensus 71 ~D~viv~vK~~-~~-~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~ 148 (305)
T PRK05708 71 IHRLLLACKAY-DA-EPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTW 148 (305)
T ss_pred cCEEEEECCHH-hH-HHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEE
Confidence 99999999543 23 366788999999999888888787664 455555432223333332 33211 0011111
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchH
Q 009963 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF 337 (521)
Q Consensus 299 ~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil 337 (521)
-|.. +.+..+.+.+++...|....+..|..+.+.+.++
T Consensus 149 ~G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 186 (305)
T PRK05708 149 LGDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLA 186 (305)
T ss_pred EcCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHH
Confidence 2222 1233456666777767655555555555444443
No 196
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.29 E-value=5.5e-06 Score=84.65 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=74.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|..||+++..... . ..| ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~-----------~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-K-----------ELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH-H-----------HcC-------------CEe-cCHHHHHhh
Confidence 69999999999999999999999999999998643211 0 011 011 233 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+-++..+.++++++++ |+|. ++-..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECcCchhcCHHHHHHHHH
Confidence 999999999988877666677778899999886 4543 33456666663
No 197
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.29 E-value=1.8e-06 Score=77.99 Aligned_cols=119 Identities=14% Similarity=0.081 Sum_probs=72.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||+|.||.+++..|...| .+|+++|++++..+...+.+.. .+ + .....+..+.+.+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~~ 81 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLAE 81 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhcccc
Confidence 58999999999999999999986 7899999999877654322110 00 0 0011111233789
Q ss_pred CCEEEEecccchh-hHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhc-CCCceeecccc
Q 009963 227 VDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY-SKDRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~-~~~r~ig~hf~ 286 (521)
+|+||.|+|.... +....+. ...+++++++++.++....+.+..... +..+++..|.+
T Consensus 82 ~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~ 141 (155)
T cd01065 82 ADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEM 141 (155)
T ss_pred CCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHH
Confidence 9999999988753 2112221 123577888776655433334544432 23345544443
No 198
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.29 E-value=7.2e-07 Score=86.33 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=60.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+++|++++|+||+++||||+|+|++++.+.|.+++++++..+ |
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN-M----------------------------------- 199 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998752 2
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f 109 (521)
.+...+|+.++.....+++++++.|.+.|
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 200 GAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 24446788888877777888888887665
No 199
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.28 E-value=4.5e-07 Score=90.67 Aligned_cols=55 Identities=11% Similarity=-0.072 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 463 TLRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 463 ~~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
+...|.+|++.+++|||++|+++|+++++||| .++++|.|||+|||+++|.+|-.
T Consensus 184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD--~~~~~g~g~p~Gp~~~~D~~Gl~ 238 (282)
T PRK05808 184 APGFVVNRILIPMINEAIFVLAEGVATAEDID--EGMKLGCNHPIGPLALADLIGLD 238 (282)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhhhH
Confidence 45689999999999999999999999999999 88889999999999999999854
No 200
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.27 E-value=3.5e-07 Score=91.10 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=68.4
Q ss_pred cchhhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHhhhcCchHHHHHhhHHHhhCCCCCccccHH
Q 009963 330 GFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMII 403 (521)
Q Consensus 330 Gfi~nRil~~~~~ea~~l~~~G~--~~~~ID~a~~-~~g~p~---GPf~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~l 403 (521)
--++++++.+++|||+++++||+ +++++|-+.. |+|||. |||.|.|..|++.++..++.+.. +.|+.++
T Consensus 294 ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l 368 (380)
T KOG1683|consen 294 EDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLL 368 (380)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHH
Confidence 45899999999999999999997 9999999988 999994 99999999999999999988765 6788888
Q ss_pred HHHHHCC
Q 009963 404 PIMQEDK 410 (521)
Q Consensus 404 ~~~~~~G 410 (521)
..+..+|
T Consensus 369 ~~~a~~~ 375 (380)
T KOG1683|consen 369 KDHAKSG 375 (380)
T ss_pred HHHHhhh
Confidence 8887763
No 201
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.24 E-value=4.3e-06 Score=83.35 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=86.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||.++|..|...|++|+++|+.....+.+. ..|. ... ++ +.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G~-------------~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADGF-------------EVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcCC-------------EEC-CHHHHHhc
Confidence 6899999999999999999999999999987643322211 1121 111 33 55789
Q ss_pred CCEEEEecccchhhHHHHH-HHHHhhCCCCceEEecCCcCcHHHHHHhhcCCC--ceeecccccccC----------CCC
Q 009963 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMP 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~--r~ig~hf~~P~~----------~~~ 293 (521)
||+|+.++|. .+.+ .++ .++.+.++++++|+- +-+..|.- ..+..|. .++=.-|-.|-+ ..|
T Consensus 72 ADVV~llLPd-~~t~-~V~~~eil~~MK~GaiL~f-~hgfni~~--~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp 146 (335)
T PRK13403 72 AQVVQMLLPD-EQQA-HVYKAEVEENLREGQMLLF-SHGFNIHF--GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVP 146 (335)
T ss_pred CCEEEEeCCC-hHHH-HHHHHHHHhcCCCCCEEEE-CCCcceec--CceeCCCCCeEEEECCCCCChHHHHHHHcCCCce
Confidence 9999999996 4444 555 568888999998753 33333321 1111121 122222222222 123
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeE
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~ 322 (521)
.+.-|.-+ .+-.+.+.+..+...+|.+.
T Consensus 147 ~l~av~qd-~sg~a~~~ala~a~~iG~~r 174 (335)
T PRK13403 147 ALVAVHQD-ATGTALHVALAYAKGVGCTR 174 (335)
T ss_pred eEEEEEEC-CCCcHHHHHHHHHHHcCCCc
Confidence 22222222 33446778888888888763
No 202
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.22 E-value=5e-06 Score=84.11 Aligned_cols=97 Identities=28% Similarity=0.403 Sum_probs=65.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|.++|..++..| .+|.++|++++.++.....+... ..... . ..+ .+.++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~----~--~~i-~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVK----P--VRI-YAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccC----C--eEE-eeCCHHHhC
Confidence 48999999999999999999999 58999999988765322111110 00000 0 122 246788899
Q ss_pred CCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceE
Q 009963 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (521)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il 258 (521)
+||+||.+++. +..+-+++..++.++.+.+.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999864 2233455666777776554443
No 203
>PLN02602 lactate dehydrogenase
Probab=98.21 E-value=4.3e-06 Score=85.58 Aligned_cols=96 Identities=26% Similarity=0.395 Sum_probs=64.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh--cccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI--SLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~ 223 (521)
+||+|||+|.+|+.+|..++..|. ++.++|++++.++.....+.+.. ... ..+..+.++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~---------------~~~~~~~i~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA---------------AFLPRTKILASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh---------------hcCCCCEEEeCCCHHH
Confidence 599999999999999999998886 79999999877654333322211 111 23444467889
Q ss_pred ccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEE
Q 009963 224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 224 ~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+++||+||.+.-. +..+-+++...+.+++++ ++++
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~ivi 151 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPD-TILL 151 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEE
Confidence 9999999998521 112334555667776654 4443
No 204
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.20 E-value=2.5e-06 Score=88.70 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=70.2
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|+|||++++|++|+++||||++||++++ +.+.+++.+++... |
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p----------------------------------- 238 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-P----------------------------------- 238 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999988 67778888876641 1
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~ 126 (521)
.+...+|+.+... ..+.+.++..|.+.+..|+.+++.++.+.+|.
T Consensus 239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 1333566666554 23456778888999999999999999999994
No 205
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.18 E-value=1.3e-05 Score=81.04 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=75.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|..||++.+..... . ......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~-----------------~---------~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV-----------------Q---------SFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc-----------------e---------eecccccHHHHHhc
Confidence 689999999999999999999999999999876431100 0 00011233 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~ 275 (521)
||+|+.++|.+.+.+.-+-.+....++++++++ |++ .+.-+.+.+.+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHh
Confidence 999999999999887777677777899999886 554 345567777764
No 206
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.16 E-value=5.2e-06 Score=84.10 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=64.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+.+|..++..|+ ++.++|++++.++.....+.+..... ....+. +.++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-------------~~~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-------------SPTKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-------------CCeEEE-eCCHHHhC
Confidence 499999999999999999999998 89999999887665443332221000 001233 45788999
Q ss_pred CCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEE
Q 009963 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+||+||.+.-. +..+-+++..++.++.+ ++++.
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vi 119 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFL 119 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99999987621 22234455556666654 45544
No 207
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.16 E-value=1.1e-06 Score=88.00 Aligned_cols=52 Identities=4% Similarity=-0.221 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
=|.+|++.+++|||++|+++++++++||| .++..+.|||+|||+++|.+|-.
T Consensus 191 fi~nRi~~~~~~Ea~~ll~eGv~~~~dID--~~~~~g~G~p~Gpf~~~D~~Gld 242 (286)
T PRK07819 191 FVVNALLVPYLLSAIRMVESGFATAEDID--KAMVLGCAHPMGPLRLSDLVGLD 242 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhccH
Confidence 38999999999999999999999999999 88889999999999999999854
No 208
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.15 E-value=6.3e-06 Score=73.72 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=59.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++. +.|. ...+-.++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~Gf-------------~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADGF-------------EVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCCC-------------eeccHHHHHhh
Confidence 6899999999999999999999999999998876 333322 3342 12222366899
Q ss_pred CCEEEEecccchhhHHHHH-HHHHhhCCCCceEEe
Q 009963 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILAS 260 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~s 260 (521)
+|+|+..+|+. +-.++| ++|.+.++++..+.-
T Consensus 61 aDvV~~L~PD~--~q~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 61 ADVVMLLLPDE--VQPEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp -SEEEE-S-HH--HHHHHHHHHHHHHS-TT-EEEE
T ss_pred CCEEEEeCChH--HHHHHHHHHHHhhCCCCCEEEe
Confidence 99999999965 446777 789999999998753
No 209
>PRK07574 formate dehydrogenase; Provisional
Probab=98.15 E-value=2.8e-05 Score=80.54 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=73.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|.+|..||++....+... ..| +....++ +.+++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence 6899999999999999999999999999999763211100 011 1112234 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+=++....++++++|+ |+|. +.-+.+.+++.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHH
Confidence 999999999988876555456777899999886 5543 33456666664
No 210
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.15 E-value=1.3e-06 Score=87.65 Aligned_cols=52 Identities=15% Similarity=-0.006 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
=+.+|++.+++|||++|+++++++++||| .+++++.|||+|||+++|.+|-.
T Consensus 186 f~~nRl~~~~~~ea~~~~~~gv~~~~~iD--~~~~~g~g~p~Gp~~~~D~~Gl~ 237 (288)
T PRK09260 186 FVTSRISALVGNEAFYMLQEGVATAEDID--KAIRLGLNFPMGPLELGDLVGLD 237 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhhHH
Confidence 48899999999999999999999999999 88889999999999999999854
No 211
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.14 E-value=7.5e-06 Score=82.49 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=67.1
Q ss_pred EEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
|+|||+|.+|+.+|..++..| .+++++|++++.++....++.+..... ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999987765443333221100 01234445568899999
Q ss_pred CEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 228 DlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
|+||.++.. +..+-+++...+.+++ |+++++..|
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s 115 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS 115 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence 999998742 2224455666788877 555554333
No 212
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.14 E-value=4.6e-06 Score=84.19 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=39.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|+|||++++|+||+++||||+|||++++.+.+.++|++++..
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~ 229 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV 229 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999999999999885
No 213
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.13 E-value=1.3e-06 Score=87.56 Aligned_cols=54 Identities=6% Similarity=-0.199 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 464 LRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 464 ~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
..-|.+|++.+++|||++++++|+++++||| .++..++|||+|||+++|.+|-.
T Consensus 188 pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD--~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 188 PGYILNSLLVPFLSAALALWAKGVADPETID--KTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CCHhHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhccCCCcCHHHHHHHhchH
Confidence 3579999999999999999999999999999 88889999999999999999854
No 214
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.13 E-value=1.2e-06 Score=87.22 Aligned_cols=51 Identities=6% Similarity=-0.161 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELAR 518 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 518 (521)
=|.+|++.++.|||++++++|++++++|| ..|..+.|||||||++.|.+|-
T Consensus 187 Fi~NRil~~~~~eA~~l~~eGva~~e~ID--~~~~~~~G~pmGpf~l~D~~Gl 237 (307)
T COG1250 187 FIVNRLLAALLNEAIRLLEEGVATPEEID--AAMRQGLGLPMGPFELADLIGL 237 (307)
T ss_pred eehHhHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhccCCCccHHHHHHHHhH
Confidence 48999999999999999999999999999 9899999999999999999984
No 215
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.12 E-value=1.9e-05 Score=75.29 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=109.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
++|++||+|.|...|+..+..+|+ ++..+-.+......- ....| .-...++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~----------~~~~g------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLM----------FEALG------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhh----------hhcCC------------ceeeechHHH
Confidence 479999999999999999999986 444444322221110 01112 1122334566
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccCCCCeEE-EEeCCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQ 302 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lve-iv~~~~ 302 (521)
++.+|+++.++- +.+-..++.++...+..+.|+.|...+.+++.+...+..+.|++...++.|..+..... +..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 789999999983 44455666666655566779999999999999999888778999999999988776666 446777
Q ss_pred CcHHHHHHHHHHHHhcCCeE
Q 009963 303 TSPQVIVDLLDIGKKIKKTP 322 (521)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~ 322 (521)
...+..+.+.+++...|+..
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 77888899999999999743
No 216
>PLN03139 formate dehydrogenase; Provisional
Probab=98.11 E-value=4e-05 Score=79.39 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (521)
++|+|||.|.||..+|..+...|.+|..||++....+... +.| +....+++ .+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence 6899999999999999999999999999998753211100 011 11223443 4689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|...+.+.-+-+++...++++++|+ |++. +.-+.+.+.+.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACS 306 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHH
Confidence 999999999988877666567888899999886 5553 33456766664
No 217
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.11 E-value=7e-06 Score=83.87 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=68.7
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|+|||+|.||..+|..++ ..|.+|+.||++...... .+ +....++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHHH
Confidence 58999999999999999984 458899999988643210 00 1122344 3478
Q ss_pred CCCEEEEecccchhhHHHHH-HHHHhhCCCCceEEecCCcC--cHHHHHHhhc
Q 009963 226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTI--DLNLIGERTY 275 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~-~~l~~~~~~~~il~sntS~l--~i~~ia~~~~ 275 (521)
+||+|+.++|.....+. ++ .++.+.++++++|+..+.+. .-..+...+.
T Consensus 200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 99999999998876653 43 45667789999886444333 3345656553
No 218
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.07 E-value=2e-06 Score=86.40 Aligned_cols=52 Identities=6% Similarity=-0.123 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
=+.+|++.+++|||++++++|+++++||| ..++.++|||+|||+|+|.+|-.
T Consensus 190 fv~nRl~~~~~~ea~~~~~~g~a~~~~iD--~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 190 FFTTRFIEGWLLEAIRSFEIGIATIKDID--EMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred eeHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHhhcCCCccCHHHHHHHhhHH
Confidence 37899999999999999999999999999 88888999999999999999854
No 219
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.07 E-value=2.7e-05 Score=78.34 Aligned_cols=123 Identities=14% Similarity=0.087 Sum_probs=82.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++... .+. . . ...++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~---------~--~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S---------S--IYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c---------c--ccCCHHHHHhh
Confidence 68999999999999999887779999999987421 010 0 0 01233 34689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcC-CCceeecccc--ccc---CCCCeEEE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF--SPA---HVMPLLEI 297 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~-~~r~ig~hf~--~P~---~~~~lvei 297 (521)
||+|+.++|-+.+.+.-+-++....++++++++ |+|. +.-.++.+.+.. .....++--| .|. +..+-+.+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nvii 252 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVIL 252 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEE
Confidence 999999999988876655566777789999886 5554 344567666643 2333444333 232 23455666
Q ss_pred EeC
Q 009963 298 VRT 300 (521)
Q Consensus 298 v~~ 300 (521)
.|+
T Consensus 253 TPH 255 (303)
T PRK06436 253 SPH 255 (303)
T ss_pred CCc
Confidence 676
No 220
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.07 E-value=1.5e-05 Score=80.69 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=76.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
+||+|+|+ |..|..++..++..|+ +|+++|+++ +.++.....+. +.+...+ ...++..+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccC---------CCcEEEECCCHH
Confidence 58999998 9999999999999987 499999965 44333222221 1111111 012455566788
Q ss_pred cccCCCEEEEecc--c----c-h-------hhHHHHHHHHHhhCCCCceEEecCCcCcHHH--HHHhhcC-CCceeec
Q 009963 223 SFKDVDMVIEAII--E----N-V-------SLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA 283 (521)
Q Consensus 223 ~~~~aDlVIeav~--e----~-~-------~~k~~v~~~l~~~~~~~~il~sntS~l~i~~--ia~~~~~-~~r~ig~ 283 (521)
++++||+||.++. . + . .+-+++...+.+.++ ++++..+++..++-. +....+. +.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 8999999999984 1 1 1 234455556777664 666666777665532 2222222 3566665
No 221
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.03 E-value=4.1e-05 Score=77.58 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=78.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (521)
++|||||+|.+|+.+|..+..-|.+|..||+ ........ .+ .....+++ .++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~~-------------~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------DG-------------VVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------cc-------------ceecccHHHHHh
Confidence 6899999999999999999999999999999 43322210 01 11223453 478
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcCC-Cceeecccc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYSK-DRIVGAHFF 286 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~~-~r~ig~hf~ 286 (521)
.||+|+..+|...+.+.-+=++....++++++|+ |+|- +.-..+.+++... -+-.++-.|
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf 260 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVF 260 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCC
Confidence 9999999999998865555456667789999775 7763 4556777777432 232444444
No 222
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.02 E-value=1.4e-05 Score=79.82 Aligned_cols=103 Identities=28% Similarity=0.382 Sum_probs=65.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
+||+|||+|.+|+++|..++..++ ++.++|++++.++.-...+.+... ......++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~------------~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAA------------PLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcch------------hccCceEEecCCChhhhc
Confidence 489999999999999999987764 899999996554432211111100 000112333334589999
Q ss_pred CCCEEEEec--c------------cchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 226 ~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
++|+||.+. | .|..+.+++-+++.+.++ +.++...|.
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtN 119 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTN 119 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecC
Confidence 999999886 3 233355566667777776 555443343
No 223
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.00 E-value=3.4e-06 Score=84.89 Aligned_cols=54 Identities=13% Similarity=-0.049 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 464 LRLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 464 ~~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
...|.+|++.+++|||++|+++++++++||| .+++++.|||+|||+++|.+|-.
T Consensus 186 ~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD--~~~~~g~g~~~Gp~~~~D~~Gl~ 239 (295)
T PLN02545 186 PGFIVNRILMPMINEAFYALYTGVASKEDID--TGMKLGTNHPMGPLHLADFIGLD 239 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhccCCCCCHHHHHHHhchH
Confidence 3579999999999999999999999999999 88889999999999999999853
No 224
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.98 E-value=5.2e-05 Score=68.13 Aligned_cols=113 Identities=23% Similarity=0.235 Sum_probs=72.4
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCc-ccccCC
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDY-ESFKDV 227 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~-~~~~~a 227 (521)
|+|+|+|.||.-+|..|.++|++|+++++++ .++... +.|. ++..+-+..........+. +....+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecccceecccccccCcchhccCCC
Confidence 7899999999999999999999999999998 655422 1121 1000000000000001111 246789
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYS 276 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~ 276 (521)
|+||.|+.... + ..++..+.+.+.+++.+++...++... .+.+..+.
T Consensus 69 D~viv~vKa~~-~-~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 69 DLVIVAVKAYQ-L-EQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp SEEEE-SSGGG-H-HHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTG
T ss_pred cEEEEEecccc-h-HHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCC
Confidence 99999996543 2 467888999999998777777777754 44444433
No 225
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.97 E-value=0.00017 Score=71.17 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=102.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--c
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--F 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~ 224 (521)
-.+|||||.|.||.=+|..+.++|+.|...||++ -+.+.+++ ..+.. +++.+ -
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y--------g~~~f---------------t~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY--------GSAKF---------------TLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh--------ccccc---------------ccHHHHHh
Confidence 3689999999999999999999999999999987 22222111 11111 11211 2
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhh-CCCCceEEecCCcCcH--HHHHHhhcCCCceeecccccccC-C------CCe
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFSPAH-V------MPL 294 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~sntS~l~i--~~ia~~~~~~~r~ig~hf~~P~~-~------~~l 294 (521)
...|+|+.|+.-- . -.++++..-.. ++.++|++..+|..-. +....-++..-.++..|++..+. . .|+
T Consensus 107 rhpDvvLlctsil-s-iekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTSIL-S-IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEehhh-h-HHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 5689999998422 2 23444444333 5678999999987533 34455666667789999985443 2 256
Q ss_pred EEEE---eCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 295 LEIV---RTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 295 veiv---~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
|-+- ......++..+.+.+++...|...|.+.
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS 219 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 5442 1223458899999999999998888764
No 226
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.97 E-value=4.7e-06 Score=83.75 Aligned_cols=52 Identities=12% Similarity=-0.080 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcchhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFLSHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
=|.+|++.+++|||++++++|+++++||| .+++++.|||+|||+++|.+|-.
T Consensus 188 ~i~nRl~~~~~~ea~~~~~~g~~~~~~iD--~~~~~g~g~~~GP~~~~D~~Gl~ 239 (292)
T PRK07530 188 FIVNRILLPMINEAIYTLYEGVGSVEAID--TAMKLGANHPMGPLELADFIGLD 239 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCCCHHHHHHHhhhH
Confidence 48899999999999999999999999999 88889999999999999999853
No 227
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.96 E-value=6.6e-05 Score=81.49 Aligned_cols=129 Identities=18% Similarity=0.102 Sum_probs=82.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||+.... +... ..| +....++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 1110 111 1112244 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcC-CCceeecccc--ccc-----CCCCeE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~-~~r~ig~hf~--~P~-----~~~~lv 295 (521)
||+|+.++|-..+.+.-+=++..+.++++++++ |+|. +.-..+.+++.. .-...++--| .|+ +..+-+
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 272 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-NCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNV 272 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-EcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCe
Confidence 999999999887765544355666789999886 5543 344677777643 2233344333 232 233445
Q ss_pred EEEeCCC
Q 009963 296 EIVRTNQ 302 (521)
Q Consensus 296 eiv~~~~ 302 (521)
.++|+-.
T Consensus 273 i~TPHia 279 (525)
T TIGR01327 273 IATPHLG 279 (525)
T ss_pred EECCCcc
Confidence 5666543
No 228
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.95 E-value=2.5e-05 Score=78.69 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=51.4
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
||+|||+|.+|+.+|..++..|. ++.++|++++.++.-...+.+.. .+.. ....++. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~-------~~~~----~~~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHAT-------ALTY----STNTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhh-------ccCC----CCCEEEE-ECCHHHhCC
Confidence 79999999999999999999887 79999999876554332222110 0000 0001233 457899999
Q ss_pred CCEEEEec
Q 009963 227 VDMVIEAI 234 (521)
Q Consensus 227 aDlVIeav 234 (521)
||+||.+.
T Consensus 69 aDivvita 76 (307)
T cd05290 69 ADIIVITA 76 (307)
T ss_pred CCEEEECC
Confidence 99999886
No 229
>PRK05442 malate dehydrogenase; Provisional
Probab=97.92 E-value=2.4e-05 Score=79.45 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=66.0
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--c
Q 009963 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--L 214 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~ 214 (521)
..||+|||+ |.+|+.+|..++..|+ ++.|+|++++ .++.-...+.+... .... .
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 369999998 9999999999988765 7999999653 23221111111100 0111 2
Q ss_pred cccccCcccccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 215 LTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 215 i~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
+. +.+++++++||+||.+.- .+..+-+++..++.++.++++++...|...
T Consensus 70 i~-~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 70 IT-DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred Ee-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 22 456899999999998752 112244556667788777777776555433
No 230
>PLN02928 oxidoreductase family protein
Probab=97.92 E-value=8.5e-05 Score=76.30 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=77.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|.+|+.||++........ .+ +................++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence 6899999999999999999999999999999743211100 00 0000000000000011234 45789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhcCC-Cceeecccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~~~-~r~ig~hf~ 286 (521)
||+|+.++|-+.+.+.-+=++....++++++|+..+-+ ++-+.+.+.+... -...++-.|
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 99999999988876555545677788999988643322 4556777777432 223444444
No 231
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.89 E-value=9.5e-05 Score=77.61 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=69.4
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009963 147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (521)
.-||+|||+ |.+|+.+|..++.. |+ +++++|++++.++.-.-.+.+... ..+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~--------------~~~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY--------------PLLREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh--------------hhcCceE
Confidence 369999999 99999999999988 66 899999999987654333322210 1112233
Q ss_pred -cccCcccccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 217 -GVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 217 -~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.+.+++++++||+||.+.- .+..+-+++...|.++..++++++..|.
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 3467899999999998751 1122344455567765567777665543
No 232
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.88 E-value=5e-05 Score=70.19 Aligned_cols=95 Identities=26% Similarity=0.319 Sum_probs=61.4
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc---
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--- 221 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--- 221 (521)
||.|||+|.||+.++..|++.|+ +++++|.+. +.+.+-.- ... +-|+-..+.+...+.++.+..+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-----~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-----FLS--QIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-----cHh--hCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999999999999999999 599999986 43332110 001 12222222333333333222111
Q ss_pred ----------ccccCCCEEEEecccchhhHHHHHHHHHhh
Q 009963 222 ----------ESFKDVDMVIEAIIENVSLKQQIFADLEKY 251 (521)
Q Consensus 222 ----------~~~~~aDlVIeav~e~~~~k~~v~~~l~~~ 251 (521)
+.++++|+||+| .++.+.|..+.....+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 236889999999 67888888787776665
No 233
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.87 E-value=6.5e-05 Score=67.64 Aligned_cols=97 Identities=24% Similarity=0.298 Sum_probs=61.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+++.|+|.|..|.++|+.|...|..|+++|+||-.+-++. ..| +...+-.+++..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 5799999999999999999999999999999996654432 122 2222222568899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE 272 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~ 272 (521)
|++|.+.-...-+..+-| +.+++++|+++.++. +++..+.+
T Consensus 80 di~vtaTG~~~vi~~e~~----~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHF----RQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred CEEEECCCCccccCHHHH----HHhcCCeEEeccCcCceeEeeccccc
Confidence 999998765443333433 357899999877653 45555544
No 234
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.87 E-value=1.9e-05 Score=73.32 Aligned_cols=104 Identities=21% Similarity=0.196 Sum_probs=70.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|+.||++........ ..+ . ...++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~~-------------~-~~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EFG-------------V-EYVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HTT-------------E-EESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------ccc-------------c-eeeehhhhcch
Confidence 6899999999999999999999999999999987544110 011 1 12244 34688
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhhcC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS 276 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~~~ 276 (521)
||+|+.++|-..+.+.-+=++..+.++++++|+..+-+ ++-+++.+.+..
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 99999999977665444445566778999988744333 444567777643
No 235
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.87 E-value=0.0001 Score=80.08 Aligned_cols=128 Identities=20% Similarity=0.161 Sum_probs=83.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.||..+|..+...|++|+.||++... +... ..| +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999985421 1100 111 1112 33 44789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcC-CCceeecccc--ccc-----CCCCeE
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~-~~r~ig~hf~--~P~-----~~~~lv 295 (521)
||+|+.++|-..+.+.-+-.+..+.++++++++ |+|. +.-..+.+.+.. .-.-.++--| .|. +..+-+
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 273 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRII-NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNV 273 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCe
Confidence 999999999888765554466777889999886 4443 344577776643 2223444434 232 234455
Q ss_pred EEEeCCC
Q 009963 296 EIVRTNQ 302 (521)
Q Consensus 296 eiv~~~~ 302 (521)
.+.|+-.
T Consensus 274 ilTPHia 280 (526)
T PRK13581 274 VVTPHLG 280 (526)
T ss_pred eEcCccc
Confidence 5666543
No 236
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.86 E-value=3.9e-05 Score=77.80 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=66.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (521)
-||+|||+ |.+|+++|..++..|+ +++|+|+++ +.++.-...+.+.. . .... .+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~---------~-----~~~~~~~i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA---------F-----PLLAGVVA 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcc---------c-----cccCCcEE
Confidence 58999998 9999999999998885 799999965 32332111111110 0 0001 22
Q ss_pred ccccCcccccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 216 TGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
. +.+++++++||+||.+.- .+..+-+++..++.+++++++++...|..+
T Consensus 70 ~-~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 70 T-TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred e-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 2 456899999999998751 112244556667888887677776555333
No 237
>PRK05869 enoyl-CoA hydratase; Validated
Probab=97.81 E-value=2.5e-05 Score=75.19 Aligned_cols=42 Identities=33% Similarity=0.646 Sum_probs=39.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|+++|++++|++|+++||||+|+|++++++.|.+++++++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999885
No 238
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.80 E-value=5.9e-05 Score=75.41 Aligned_cols=89 Identities=24% Similarity=0.256 Sum_probs=61.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||+|.||..+|..|...|.+|++++++++.++... +.|. . .+. ..++ +.+.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCC-e---------eec-HHHHHHHhcc
Confidence 5899999999999999999999999999999987654421 1121 0 000 1122 34689
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+|+||.++|...- . .+..+.+++++++.+.+|
T Consensus 210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCc
Confidence 9999999986531 1 233345677887765554
No 239
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.80 E-value=3.2e-05 Score=78.48 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=64.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (521)
.||+|||+ |.+|+++|..++..|+ ++.|+|++++. +..-...+.+. . + .... .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~--------~-~-----~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDC--------A-F-----PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhc--------c-c-----cccCceEE
Confidence 59999999 9999999999998886 79999996532 22211111100 0 0 0011 23
Q ss_pred ccccCcccccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 216 TGVLDYESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
. +.+++++++||+||.+.-. +..+-+++..++.++.+++++++..|
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3 4568999999999987511 12244556667788876677665554
No 240
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.79 E-value=8.2e-05 Score=74.95 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=62.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-c-C--
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D-- 220 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~-- 220 (521)
+||+|||+ |.+|+++|..++..|+ ++.++|++ .++.-.-.+. .+. ....+..+ . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~--------~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLS--------HIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhH--------hCC--------CcceEEEecCCCch
Confidence 48999999 9999999999998885 89999998 2211111111 010 01134432 3 2
Q ss_pred cccccCCCEEEEecc--------------cchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 221 YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 221 ~~~~~~aDlVIeav~--------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
++++++||+||.+.- .+..+-+++...+.++. |++++...|...
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 120 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPV 120 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCch
Confidence 799999999998751 22224445555677764 566665444433
No 241
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.77 E-value=0.00021 Score=73.91 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=66.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC-c------EEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY-P------VILK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT- 216 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~-~------V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~- 216 (521)
-||+|||+ |.+|+++|..++..|+ . +.|+ |++++.++.-.-.+.+... ..+..+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceEE
Confidence 59999999 9999999999998875 2 4445 8888876553333322110 1112233
Q ss_pred cccCcccccCCCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 217 GVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 217 ~~~~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.+.+++++++||+||.+. |- +..+-+++...|.++.++++++...|.
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 245789999999999875 11 222345555667777778887665543
No 242
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.77 E-value=0.00029 Score=73.23 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=108.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVI------LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~------l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
++|+|||.|..|..-|..+...|++|+ .+|.+.+.-+++. +.|. ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHH
Confidence 699999999999999999999999998 3343333333321 2221 112223
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC----------C
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V 291 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~----------~ 291 (521)
+.++.||+|+..+|.. . ...++.++.+.++++++|.-. -+..|..-.-..+....++-+-|-.|-+ .
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fs-HGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYS-HGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEec-CCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 5689999999999987 3 778889999999999988532 2333332211111112333333333322 1
Q ss_pred CC-eEEEEeCCCCcHHHHHHHHHHHHhcCCeE---EEec---C-cccchhhc-hHHHHH---HHHH--HHHHcCCCHHHH
Q 009963 292 MP-LLEIVRTNQTSPQVIVDLLDIGKKIKKTP---IVVG---N-CTGFAVNR-MFFPYT---QAAF--LLVERGTDLYLI 357 (521)
Q Consensus 292 ~~-lveiv~~~~t~~e~~~~~~~l~~~lGk~~---vvv~---d-~~Gfi~nR-il~~~~---~ea~--~l~~~G~~~~~I 357 (521)
.| ++.|-+-...+-...+.+..+...+|... +... + ....+..| +|+..+ .+++ .|+++|.+|+.-
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A 249 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA 249 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 23 33333223445567888899999998762 2221 1 12344444 333332 2333 577899988765
Q ss_pred H
Q 009963 358 D 358 (521)
Q Consensus 358 D 358 (521)
-
T Consensus 250 ~ 250 (487)
T PRK05225 250 E 250 (487)
T ss_pred H
Confidence 4
No 243
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.77 E-value=0.00013 Score=72.40 Aligned_cols=181 Identities=19% Similarity=0.168 Sum_probs=105.7
Q ss_pred ccceEEEEEeCChhhHHHHHHHHhC--C-----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 145 RRVKKVAILGGGLMGSGIATALILS--N-----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 145 ~~~~kI~VIG~G~mG~~iA~~la~~--G-----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
+...||+|||.|+||+.||..+..+ + .+|.+|-..++.-.. .+.+.+.+....+.-+.-++ .....++..
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg--~~lP~NvvA 95 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG--IKLPENVVA 95 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC--ccCCCCeEe
Confidence 3457999999999999999988764 2 268888766543332 11121111111111000000 123346677
Q ss_pred ccCc-ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH----------H-HHHHhhcCCCceee-cc
Q 009963 218 VLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL----------N-LIGERTYSKDRIVG-AH 284 (521)
Q Consensus 218 ~~~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i----------~-~ia~~~~~~~r~ig-~h 284 (521)
++|+ +++.++|++|.+||-. .-..++++|..++++++..+|.+-++.. + .|...++-|-.+++ ..
T Consensus 96 v~dl~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaN 173 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGAN 173 (372)
T ss_pred cchHHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCc
Confidence 7776 5688999999999976 4568999999999999988887655442 2 23344444433322 22
Q ss_pred cccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCccc
Q 009963 285 FFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 285 f~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
+-+-+......|-+-+...+.+.-..+..+|+.--..++++.|..|
T Consensus 174 iA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~ 219 (372)
T KOG2711|consen 174 IASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG 219 (372)
T ss_pred hHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence 2111112233343333322333333577788887777777777554
No 244
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.75 E-value=6.3e-05 Score=75.91 Aligned_cols=98 Identities=21% Similarity=0.358 Sum_probs=62.5
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-c-cC--c
Q 009963 149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y 221 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 221 (521)
||+|||+ |.+|+.+|..++..|+ ++.++|+++ ....+. .+ ..+. ...++.. + .+ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~-DL--------~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAA-DL--------SHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEc-hh--------hcCC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998886 899999987 211110 11 0110 0123433 2 23 7
Q ss_pred ccccCCCEEEEec--------------ccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 222 ESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 222 ~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
+++++||+||.+. ..+..+-+++...+.++. |++++...|...
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPv 119 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPV 119 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCch
Confidence 8999999999875 223334555566677774 566665444444
No 245
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.74 E-value=0.00017 Score=73.10 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=76.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.+|..+|..+..-|.+|..||+.....+ .+ +. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 6899999999999999999888999999998632100 00 00 1234 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhcC-CCceeecccc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTYS-KDRIVGAHFF 286 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~~-~~r~ig~hf~ 286 (521)
||+|+.++|-..+.+.-+=++..+.++++++|+ |+| .++-+.+.+.+.. +-. .++-.|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999888765555456667889999986 555 3455677777743 233 555555
No 246
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.71 E-value=0.00042 Score=70.44 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=71.9
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|||||.|.+|..+|..+. .-|.+|..||+....-... ..+ +.. .++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence 68999999999999999986 6788999999864211100 001 111 234 3478
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhc
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY 275 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~ 275 (521)
+||+|+.++|-+.+.+.-+=++....++++++|+ |++ -+.-+.+.+++.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999888765555456777889999886 565 345567777774
No 247
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=6.2e-05 Score=74.83 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=55.6
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||.| .||..||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 689999996 9999999999999999999986543211 23568
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.|++....++..+ +++++++++.+
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvg 231 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVG 231 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEec
Confidence 999999998765554333 78899887654
No 248
>PLN00106 malate dehydrogenase
Probab=97.69 E-value=0.00017 Score=73.17 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=61.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---
Q 009963 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--- 220 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 220 (521)
.||+|||+ |.+|+.+|..++..++ ++.++|+++ ....+. .+.+ . .. ...+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~-Dl~~--------~-------~~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAA-DVSH--------I-------NT-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEc-hhhh--------C-------Cc-CceEEEEeCCCCH
Confidence 59999999 9999999999998776 899999987 111000 0000 0 00 012221 223
Q ss_pred cccccCCCEEEEec--------------ccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 221 ~~~~~~aDlVIeav--------------~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
++++++||+||.+. +.+..+-++++..+.++. +++++...|.
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSN 136 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISN 136 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 57899999999875 233445556667777776 5555543333
No 249
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.67 E-value=2.3e-05 Score=79.34 Aligned_cols=52 Identities=6% Similarity=-0.157 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcc---hhHHHHHHHHHh
Q 009963 465 RLLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELAR 518 (521)
Q Consensus 465 ~~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~ 518 (521)
-=|.+|++.+++|||++++++|++|++||| ..+++|.|++ +|||+++|.+|-
T Consensus 188 GFi~NRl~~a~~~EA~~lv~eGvas~edID--~a~~~g~g~r~~~~Gpf~~~Dl~Gl 242 (321)
T PRK07066 188 GFIADRLLEALWREALHLVNEGVATTGEID--DAIRFGAGIRWSFMGTFLTYTLAGG 242 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCccCcCHHHHhhhcCh
Confidence 359999999999999999999999999999 8888899987 899999998764
No 250
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.64 E-value=0.00011 Score=68.50 Aligned_cols=93 Identities=18% Similarity=0.078 Sum_probs=75.8
Q ss_pred cccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 2 MLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 2 iltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
.+|+|.++|.||++.|||.+|+|+ ++|++.++.+|..++.++ |.
T Consensus 192 afTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS-pv---------------------------------- 236 (292)
T KOG1681|consen 192 AFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS-PV---------------------------------- 236 (292)
T ss_pred HhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC-ce----------------------------------
Confidence 579999999999999999999985 679999999999988763 43
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr~ 130 (521)
|+.-+|+.+..+.+++.+++|.+-..+-...+.|++......+-+.+++
T Consensus 237 -aVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k 285 (292)
T KOG1681|consen 237 -AVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLK 285 (292)
T ss_pred -eeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4446788888899999999999877777666778877777776666443
No 251
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.64 E-value=0.00032 Score=71.23 Aligned_cols=96 Identities=19% Similarity=0.192 Sum_probs=71.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|..||+.... .. .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------~~-------------~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------PD-------------RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------cc-------------ccCHHHHHHh
Confidence 68999999999999999998889999999986321 00 00 1134 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~~~ 275 (521)
||+|+.++|-+.+.+.-+=++..+.++++++|+ |+| .++-+.+.+++.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999888765555566777889999886 555 345567777774
No 252
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.61 E-value=0.00044 Score=68.60 Aligned_cols=70 Identities=24% Similarity=0.208 Sum_probs=49.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..||||||+|.||..++..+.+. +++|. ++|+++++.+...+ +.|. ....+++++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g~------------~~~~~~~ee 63 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLRR------------PPPVVPLDQ 63 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcCC------------CcccCCHHH
Confidence 47999999999999999999863 77775 88999887654321 1111 011233433
Q ss_pred -ccCCCEEEEecccch
Q 009963 224 -FKDVDMVIEAIIENV 238 (521)
Q Consensus 224 -~~~aDlVIeav~e~~ 238 (521)
+.++|+|++|+|.+.
T Consensus 64 ll~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 64 LATHADIVVEAAPASV 79 (271)
T ss_pred HhcCCCEEEECCCcHH
Confidence 578999999999764
No 253
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.59 E-value=0.00019 Score=68.50 Aligned_cols=104 Identities=27% Similarity=0.331 Sum_probs=61.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc----
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL---- 219 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---- 219 (521)
.+|.|||+|.+|+.+|..|++.|+ +++++|.+ .+.+.+- . .+.. .-|.-..+.+...+.++.+..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq---~--~~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQ---Q--YFIS--QIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecccccccc---E--eehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999998 59999998 3333221 0 0000 112111112222222221111
Q ss_pred --------Cc-ccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 220 --------DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 220 --------~~-~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+. +.++++|+||+|+ ++.+.+..+............|.+
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEe
Confidence 11 3367899999994 677777777766655433333443
No 254
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.59 E-value=0.0003 Score=70.66 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=62.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
+||.|||+|.+|..++..+...|.+|+++|+++++.+.+. +.|. + .+ ...++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~-~---------~~-~~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGL-S---------PF-HLSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCC-e---------ee-cHHHHHHHhCC
Confidence 5899999999999999999999999999999987654422 1121 0 00 00122 34678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+|+||.++|... +-++..+.+++++++++..|.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998532 223344557788888766553
No 255
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.58 E-value=8.3e-05 Score=75.55 Aligned_cols=98 Identities=21% Similarity=0.239 Sum_probs=62.5
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhc--cc
Q 009963 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFE-KTIS--LL 215 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~--~i 215 (521)
||+|||+ |.+|+.+|..++..|+ ++.++|+++ +.++.-...+. +.. .... .+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~---------------d~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQ---------------DCAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehh---------------hhcccccCCcEE
Confidence 8999999 9999999999998764 499999987 53322111111 000 0011 12
Q ss_pred ccccCcccccCCCEEEEec--c------------cchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 216 TGVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav--~------------e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
. +.+++++++||+||.+. | .+..+-+++..++.++++++++++..|
T Consensus 67 ~-~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 67 T-TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred e-cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2 34678999999999875 1 122345556667777765677665554
No 256
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.57 E-value=0.00025 Score=71.88 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=30.5
Q ss_pred ccceEEEEEeC-ChhhHHHHHHHHhCC--CcEEEEeCC
Q 009963 145 RRVKKVAILGG-GLMGSGIATALILSN--YPVILKEVN 179 (521)
Q Consensus 145 ~~~~kI~VIG~-G~mG~~iA~~la~~G--~~V~l~d~~ 179 (521)
.+++||+|||+ |.+|+.+|..++..+ .++.++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 35789999999 999999999998665 589999993
No 257
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.57 E-value=0.00012 Score=73.66 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=61.9
Q ss_pred EEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCE
Q 009963 152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (521)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 229 (521)
|||+|.+|+.+|..++..++ ++.++|++++.++.-...+.+..... + ....+. +.+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~---~---------~~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL---P---------TPKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc---C---------CCeEEe-cCCHHHHCCCCE
Confidence 69999999999999998886 79999999876654333322211000 0 001233 356899999999
Q ss_pred EEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecC
Q 009963 230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 230 VIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||.+.-. +..+-+++...+.++. +++++...|
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs 113 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT 113 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 9987622 2223445556677764 556554443
No 258
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0036 Score=62.34 Aligned_cols=195 Identities=17% Similarity=0.197 Sum_probs=122.5
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (521)
+...|+.||++.||..++...+.+|+.|.+|+|+..+.+....+-. +| ..|....++++
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea--------k~-----------~~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA--------KG-----------TKIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh--------cC-----------CcccCCCCHHHHH
Confidence 3568999999999999999999999999999999999887654321 11 11223334433
Q ss_pred --ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC--CcCcHH-HHHHhhcCCCceeeccccc---ccCCCCeE
Q 009963 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLN-LIGERTYSKDRIVGAHFFS---PAHVMPLL 295 (521)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt--S~l~i~-~ia~~~~~~~r~ig~hf~~---P~~~~~lv 295 (521)
++..-.||..|.....+ ..++++|.+++.++.||++.. +..+.. ...+.....--|+|+.--. .+...|
T Consensus 66 ~klk~PR~iillvkAG~pV-D~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-- 142 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGAPV-DQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-- 142 (487)
T ss_pred HhcCCCcEEEEEeeCCCcH-HHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--
Confidence 45667777777544333 467788999999888887643 322222 2222223333466654421 111111
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcC-------CeEEEecC-cccchh----hchHH---HHHHHHHHHHHc--CCCHHHHH
Q 009963 296 EIVRTNQTSPQVIVDLLDIGKKIK-------KTPIVVGN-CTGFAV----NRMFF---PYTQAAFLLVER--GTDLYLID 358 (521)
Q Consensus 296 eiv~~~~t~~e~~~~~~~l~~~lG-------k~~vvv~d-~~Gfi~----nRil~---~~~~ea~~l~~~--G~~~~~ID 358 (521)
.++|| .++++-..++++++.+- ....++++ ..|.++ |-|-. .++.||..++.. |.+-++|-
T Consensus 143 SlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia 220 (487)
T KOG2653|consen 143 SLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIA 220 (487)
T ss_pred ccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence 23455 47778888888877652 12345564 455443 44432 468999998875 56888888
Q ss_pred HHHHhc
Q 009963 359 RAITKF 364 (521)
Q Consensus 359 ~a~~~~ 364 (521)
.++..+
T Consensus 221 ~vF~~W 226 (487)
T KOG2653|consen 221 EVFDDW 226 (487)
T ss_pred HHHHhh
Confidence 887743
No 259
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.53 E-value=0.00023 Score=72.37 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=61.9
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhccccc
Q 009963 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG 217 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (521)
||+|||+ |.+|+.+|..++..|+ ++.|+|++++. ++.-...+ .+.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl---------------~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMEL---------------MDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeeh---------------hcccchhcCceec
Confidence 6899999 9999999999998664 59999996542 21110011 0111 11122333
Q ss_pred c-cCcccccCCCEEEEec--cc------------chhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 218 V-LDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 218 ~-~~~~~~~~aDlVIeav--~e------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+ .+++++++||+||.+. |. +..+-+++..++.+++++++++...|.
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 3 3478999999999875 11 112344555667777667777665553
No 260
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.52 E-value=0.00012 Score=75.67 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=67.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (521)
++|||||.|.||..+|..+...|++|.+||+.....+ +. .. ..+++ .+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------GD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------cc-ccCHHHHHhh
Confidence 6899999999999999999999999999997543211 00 00 12343 3689
Q ss_pred CCEEEEecccchh---hHHHHH-HHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVS---LKQQIF-ADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~---~k~~v~-~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+ --..++ ++....++++++|+ |+|. +.-..+.+.+.
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREALL 222 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 9999999997652 112333 34556789999886 5553 34456666653
No 261
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=97.52 E-value=0.00025 Score=67.62 Aligned_cols=93 Identities=12% Similarity=0.147 Sum_probs=79.9
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (521)
|++.|++++|+||...|||+++++++.+.+.++.-+++++.- |+
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l--~p---------------------------------- 214 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKL--SP---------------------------------- 214 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcC--CH----------------------------------
Confidence 578999999999999999999999999999999999988773 21
Q ss_pred chHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Q 009963 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (521)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~a~~~~~aF~~kr 129 (521)
+.....|++++......+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus 215 ~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 215 ESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 2344578888887777888899999999999999999999999988754
No 262
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.51 E-value=0.00019 Score=63.39 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=52.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
-++|.|||+|-||.+++..|...|.. |++++|+.++++...+.+ ....+ .+....+. +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 36899999999999999999999986 999999999877643321 00000 01111222 346
Q ss_pred cCCCEEEEecccchh
Q 009963 225 KDVDMVIEAIIENVS 239 (521)
Q Consensus 225 ~~aDlVIeav~e~~~ 239 (521)
.++|+||.|+|..+.
T Consensus 74 ~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 74 QEADIVINATPSGMP 88 (135)
T ss_dssp HTESEEEE-SSTTST
T ss_pred hhCCeEEEecCCCCc
Confidence 789999999986643
No 263
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.49 E-value=0.00053 Score=71.14 Aligned_cols=124 Identities=16% Similarity=0.212 Sum_probs=82.3
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCcchh---h-cccCC-----------------CCCc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---L-YKTDK-----------------IEPL 59 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~~~~---~-~~~~~-----------------~~~~ 59 (521)
|+|||++++|++|+++||||++||++++.+.+.+++ +++... |.... . ..... +...
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSND-PTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999988888777 444321 11100 0 00000 0000
Q ss_pred hHHHHHHH------------HHHHHHHH-hCCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHhC---CHHHHHHHH
Q 009963 60 GEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVH 123 (521)
Q Consensus 60 ~~~~~~~~------------~a~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~a~~~~~ 123 (521)
+ ...+++ .++..... +.+.+.+...+.+.++++...++++.++.|...-..++. ++|+.++++
T Consensus 246 ~-~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVR 324 (381)
T PLN02988 246 T-VEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCR 324 (381)
T ss_pred C-HHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 0 000111 12222222 123455677788999999889999999999999999988 699999999
Q ss_pred HHHh
Q 009963 124 IFFA 127 (521)
Q Consensus 124 aF~~ 127 (521)
+-+-
T Consensus 325 A~Li 328 (381)
T PLN02988 325 AILV 328 (381)
T ss_pred HHhc
Confidence 8765
No 264
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.49 E-value=0.00062 Score=67.35 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=55.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+...+ +.+ ....+++++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence 5899999999999999998876 355 5689999987655321 011 112334444
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
+.++|+|++|+|.+. -.++..++.+. ..+.++.
T Consensus 59 l~~~DvVvi~a~~~~--~~~~~~~al~~-Gk~Vvv~ 91 (265)
T PRK13304 59 VEDVDLVVECASVNA--VEEVVPKSLEN-GKDVIIM 91 (265)
T ss_pred hcCCCEEEEcCChHH--HHHHHHHHHHc-CCCEEEE
Confidence 478999999997543 23444443332 3444443
No 265
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.48 E-value=0.00013 Score=75.30 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=66.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 226 (521)
++|||||.|.||+.+|..+..-|.+|.+||+.... . +. ... ..+++. +++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------EGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------ccc-cCCHHHHHhh
Confidence 58999999999999999999999999999964321 0 00 000 123443 689
Q ss_pred CCEEEEecccchh----hHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~----~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+..+|-..+ ...-+=++....++++++++ |+|- ++-+.+.+.+.
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLN 222 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHH
Confidence 9999999986543 22222244556789999886 5653 44556666663
No 266
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.45 E-value=0.00016 Score=70.39 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.6
Q ss_pred CcccCCCCCHhHHHhCCCcceecCC-chHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~l~~~ 42 (521)
|+++|++++|+||+++||||+|||+ +++++.|.++|++++..
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999985 68999999999999875
No 267
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.44 E-value=0.00089 Score=67.89 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|..+|..+..-|.+|..||+.... .. ..+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------REG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------ccc----------------cCCHHHHHHh
Confidence 68999999999999999998889999999975321 00 000 1234 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+=++..+.++++++|+ |+|- ++-+.+.+.+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999887765444456677789999886 5552 45567777774
No 268
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.42 E-value=0.00026 Score=74.41 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=72.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|||||.|.+|..+|..+..-|.+|..||+++... .+ ......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999864210 00 01112244 34789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
||+|+.++|-..+.+.-+=++....++++++|+ |+|. ++-+.+.+.+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 999999999888765554456677789999886 5553 45567777664
No 269
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00034 Score=69.74 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=54.8
Q ss_pred eEEEEEe-CChhhHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++|+||| .|.||..||..|.++|++|++|+ ++.+ ++ +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence 6899999 99999999999999999999995 5542 11 2256
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+||+||.|++....++.. .+++++++++.+.
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGi 231 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGI 231 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCC
Confidence 799999999876543322 2788998876543
No 270
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.42 E-value=0.00094 Score=69.79 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=61.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+. +.|. + .....+.+.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~-~------------~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGY-E------------VMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCC-E------------EccHHHHHcCC
Confidence 5899999999999999999999999999999998876643 1232 0 00011345789
Q ss_pred CEEEEecccchhhHHHHHH-HHHhhCCCCceEEecC
Q 009963 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNT 262 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~snt 262 (521)
|+||+|.... .++. .....++++.+++..+
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence 9999998543 2333 3345678888886444
No 271
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.41 E-value=0.0046 Score=61.83 Aligned_cols=157 Identities=16% Similarity=0.080 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccCCCEEEEeccc
Q 009963 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (521)
Q Consensus 158 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (521)
||+.+|..|+++|++|++++++ +.++... +.|. +....-......+..+++.+.+..+|+||.|++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 4444321 1221 0000000000022334445557799999999986
Q ss_pred chhhHHHHHHHHHhhCCCCceEEecCCcCcHH-HHHHhhcCCCceeec-ccc-----cccCC----CCeEEEEeCCCCcH
Q 009963 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGA-HFF-----SPAHV----MPLLEIVRTNQTSP 305 (521)
Q Consensus 237 ~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~-~ia~~~~~~~r~ig~-hf~-----~P~~~----~~lveiv~~~~t~~ 305 (521)
.. + ..+++.+.+.+.++++|++...++... .+...++. .++++. -++ .|... ..-+.+-..+.. .
T Consensus 70 ~~-~-~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~-~ 145 (293)
T TIGR00745 70 YQ-T-EEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGE-N 145 (293)
T ss_pred hh-H-HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCc-h
Confidence 53 3 567788988888888888777777544 45544432 344332 221 22211 011122222222 2
Q ss_pred HHHHHHHHHHHhcCCeEEEecCccc
Q 009963 306 QVIVDLLDIGKKIKKTPIVVGNCTG 330 (521)
Q Consensus 306 e~~~~~~~l~~~lGk~~vvv~d~~G 330 (521)
+....+.+++...|.......|..+
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~ 170 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILA 170 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHH
Confidence 5566777778877766656555433
No 272
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.41 E-value=0.0012 Score=62.31 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=35.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|+|+|.|.||..+|+.|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999998876654
No 273
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.00057 Score=69.35 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=60.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++|+|||+|.||..++..+.. ...+|++|++++++.+...+.+.+ .|. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 3589999999999999985554 346899999999987775433211 110 12223343 45
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+.+||+||.|.+... .++.. +.+++++++...+|
T Consensus 187 v~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~ 220 (314)
T PRK06141 187 VRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN 220 (314)
T ss_pred HhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence 789999998887652 22221 35677876654444
No 274
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.35 E-value=0.0014 Score=60.52 Aligned_cols=74 Identities=23% Similarity=0.295 Sum_probs=46.5
Q ss_pred EEEEEeCChhhHHHHH--HHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009963 149 KVAILGGGLMGSGIAT--ALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~--~la~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (521)
||+|||+|..-.+.-. .+... +-+++++|+|+++++....-.+.. ++.-.. .-++..|+|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~--------~~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGA--------DLKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTT--------SSEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCC--------CeEEEEeCCHH
Confidence 7999999988665332 33332 348999999999988654333222 222111 1256677887
Q ss_pred ccccCCCEEEEec
Q 009963 222 ESFKDVDMVIEAI 234 (521)
Q Consensus 222 ~~~~~aDlVIeav 234 (521)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 5699999999885
No 275
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.35 E-value=0.0018 Score=68.31 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=49.6
Q ss_pred eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
+||+|||+|.- ...+...+++. +-+|+++|+|+++++... ....+..+....+ -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~----~l~~~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIIL----TIAKRYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEeCCH
Confidence 48999999874 33455555543 458999999999987632 2222233321111 246677786
Q ss_pred -ccccCCCEEEEec
Q 009963 222 -ESFKDVDMVIEAI 234 (521)
Q Consensus 222 -~~~~~aDlVIeav 234 (521)
+++.+||+||.++
T Consensus 69 ~~Al~gADfVi~~i 82 (425)
T cd05197 69 EDAIIDADFVINQF 82 (425)
T ss_pred HHHhCCCCEEEEee
Confidence 6799999999875
No 276
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.34 E-value=0.0012 Score=68.78 Aligned_cols=97 Identities=24% Similarity=0.173 Sum_probs=66.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. ......+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence 6899999999999999999999999999999997644322 1221 001111346789
Q ss_pred CEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCC---cCcHHHHHHh
Q 009963 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS---TIDLNLIGER 273 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS---~l~i~~ia~~ 273 (521)
|+||++.... .++. +....++++++++..+. .++...+.+.
T Consensus 252 DVVItaTG~~-----~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 252 DIFITATGNK-----DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 9999987532 3333 35567889998874443 1455566553
No 277
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.34 E-value=0.0014 Score=63.04 Aligned_cols=76 Identities=21% Similarity=0.348 Sum_probs=57.0
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+..||.|||.|..|.++|..++.+|. ++.++|.+++++....-++ +.|. .--...++....||..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDL--------qH~s-----~f~~~~~V~~~~Dy~~ 85 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDL--------QHGS-----AFLSTPNVVASKDYSV 85 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhh--------cccc-----ccccCCceEecCcccc
Confidence 36799999999999999999999886 8999999999876532111 1111 0011246667778999
Q ss_pred ccCCCEEEEec
Q 009963 224 FKDVDMVIEAI 234 (521)
Q Consensus 224 ~~~aDlVIeav 234 (521)
-+++++||..+
T Consensus 86 sa~S~lvIiTA 96 (332)
T KOG1495|consen 86 SANSKLVIITA 96 (332)
T ss_pred cCCCcEEEEec
Confidence 99999999876
No 278
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.32 E-value=0.0012 Score=69.38 Aligned_cols=75 Identities=25% Similarity=0.315 Sum_probs=48.5
Q ss_pred eEEEEEeCChhhH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 148 ~kI~VIG~G~mG~-~iA~~la~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
+||+|||+|..-+ .+...+++. +-+|+++|+| +++++....-+ .+..+....+ -++..|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~----~~~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALA----KRMVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHH----HHHHHhhCCC--------eEEEEeCC
Confidence 4899999998633 445555542 3589999999 78876533222 2222221111 14666777
Q ss_pred c-ccccCCCEEEEec
Q 009963 221 Y-ESFKDVDMVIEAI 234 (521)
Q Consensus 221 ~-~~~~~aDlVIeav 234 (521)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 6 5689999999886
No 279
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00036 Score=71.85 Aligned_cols=80 Identities=24% Similarity=0.270 Sum_probs=55.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF 224 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 224 (521)
+++|.|||+|.+|+.+|..|+++| .+|++-||+.++++++..... +++...+.+ +.-... .+.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD-----~~d~~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVD-----AADVDALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEec-----ccChHHHHHHH
Confidence 468999999999999999999999 899999999999888653211 111111000 000001 1346
Q ss_pred cCCCEEEEecccchhh
Q 009963 225 KDVDMVIEAIIENVSL 240 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~ 240 (521)
++.|+||.|+|.....
T Consensus 67 ~~~d~VIn~~p~~~~~ 82 (389)
T COG1748 67 KDFDLVINAAPPFVDL 82 (389)
T ss_pred hcCCEEEEeCCchhhH
Confidence 7889999999987653
No 280
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.31 E-value=0.001 Score=67.52 Aligned_cols=94 Identities=19% Similarity=0.104 Sum_probs=58.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
-++|+|||+|.||..++..+...| .+|+++|+++++.....+. .|. . .+....-.+.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-~---------~~~~~~~~~~l~ 237 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-N---------AVPLDELLELLN 237 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-e---------EEeHHHHHHHHh
Confidence 368999999999999999998866 6899999999876553221 111 0 000011123467
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhC-CCCceEEecC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~-~~~~il~snt 262 (521)
++|+||.|++.... ..++..+.+.. ..+.++++.+
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 89999999986643 33344332222 2455665544
No 281
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.31 E-value=0.00046 Score=68.48 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=50.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|+|+|.||.+++..|+..|++|+++++++++++...+.+. +.+... ..+.+.....++
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~-------~~~~~~-----------~~~~~~~~~~~~ 179 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQ-------RYGEIQ-----------AFSMDELPLHRV 179 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-------hcCceE-----------EechhhhcccCc
Confidence 58999999999999999999999999999999887765433221 111100 001111224579
Q ss_pred CEEEEecccc
Q 009963 228 DMVIEAIIEN 237 (521)
Q Consensus 228 DlVIeav~e~ 237 (521)
|+||.|+|..
T Consensus 180 DivInatp~g 189 (270)
T TIGR00507 180 DLIINATSAG 189 (270)
T ss_pred cEEEECCCCC
Confidence 9999999865
No 282
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.29 E-value=0.0024 Score=67.46 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=49.7
Q ss_pred eEEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
+||+|||+|.. +..+...++.. +-+|+++|+|+++++... ....+..++...+ -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~----~l~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA----EAVKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEECCH
Confidence 58999999875 33445555543 358999999999987632 2222333321111 256677786
Q ss_pred -ccccCCCEEEEec
Q 009963 222 -ESFKDVDMVIEAI 234 (521)
Q Consensus 222 -~~~~~aDlVIeav 234 (521)
+++.+||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 6799999999875
No 283
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.28 E-value=0.00056 Score=69.36 Aligned_cols=102 Identities=22% Similarity=0.135 Sum_probs=73.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+++||||.|.+|..+|+.+.--|.+|..||+++. -+. . +.+ ......-.+.+++|
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~-~-----------~~~------------~~~y~~l~ell~~s 201 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEA-E-----------KEL------------GARYVDLDELLAES 201 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHH-H-----------hhc------------CceeccHHHHHHhC
Confidence 7999999999999999999877889999999874 111 0 000 01122212458999
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
|+|+..+|-..+...-+=++..+.++++++|+ ||+- ++-..+.+++.
T Consensus 202 Dii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 202 DIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK 251 (324)
T ss_pred CEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 99999999988876666567777899999885 7763 45556666664
No 284
>PLN02306 hydroxypyruvate reductase
Probab=97.28 E-value=0.00069 Score=70.43 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=73.3
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009963 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (521)
++|||||.|.+|..+|..+. .-|.+|..||+.... .+........ .....+. .. ..+....+++ .+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~---~l~~~~~-~~-------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ---FLKANGE-QP-------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcc---ccccccc-cc-------ccccccCCHHHHH
Confidence 68999999999999999985 569999999987532 1110000000 0000000 00 0111223554 47
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~ 275 (521)
+.||+|+.++|-..+.+.-+=.+..+.++++++|+ |++- ++-..+.+++.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 89999999999887765555566777899999886 5553 45566767664
No 285
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.27 E-value=0.0025 Score=60.47 Aligned_cols=132 Identities=15% Similarity=0.223 Sum_probs=80.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|||+|.+|..-+..|++.|.+|++++.+... . +..+.+.|.+. .+...-..+++.++
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~--~--------l~~l~~~~~i~---------~~~~~~~~~dl~~~ 70 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES--E--------LTLLAEQGGIT---------WLARCFDADILEGA 70 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH--H--------HHHHHHcCCEE---------EEeCCCCHHHhCCc
Confidence 58999999999999999999999999999876531 1 11122333221 11111123458899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCCcH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTSP 305 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~~ 305 (521)
|+||-|. ++.++...++.... ...+++.+.+. |+ -..|+.|. ...+++--|.+.+.+|
T Consensus 71 ~lVi~at-~d~~ln~~i~~~a~----~~~ilvn~~d~------------~e---~~~f~~pa~~~~g~l~iaisT~G~sP 130 (205)
T TIGR01470 71 FLVIAAT-DDEELNRRVAHAAR----ARGVPVNVVDD------------PE---LCSFIFPSIVDRSPVVVAISSGGAAP 130 (205)
T ss_pred EEEEECC-CCHHHHHHHHHHHH----HcCCEEEECCC------------cc---cCeEEEeeEEEcCCEEEEEECCCCCc
Confidence 9999774 55566666655433 33345433322 11 12355663 4456666677777888
Q ss_pred HHHHHHHHHHHhc
Q 009963 306 QVIVDLLDIGKKI 318 (521)
Q Consensus 306 e~~~~~~~l~~~l 318 (521)
.....+++-++.+
T Consensus 131 ~la~~lr~~ie~~ 143 (205)
T TIGR01470 131 VLARLLRERIETL 143 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 7777666665543
No 286
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0023 Score=61.69 Aligned_cols=94 Identities=22% Similarity=0.304 Sum_probs=62.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---c--
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y-- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-- 221 (521)
+++.|||+|.+|.++|..|.+.|++|+++|.+++.+++.... .+ +. ..+.. .++ +
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~------~~----------~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---EL------DT----------HVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hc------ce----------EEEEecCCCHHHHHh
Confidence 589999999999999999999999999999999988763210 00 00 00100 111 1
Q ss_pred ccccCCCEEEEecccchhhHHHHHHHHHhh-CCCCceEEecC
Q 009963 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNT 262 (521)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~v~~~l~~~-~~~~~il~snt 262 (521)
..+.++|.||-+...|. ...++..+... +....+++-..
T Consensus 62 agi~~aD~vva~t~~d~--~N~i~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 62 AGIDDADAVVAATGNDE--VNSVLALLALKEFGVPRVIARAR 101 (225)
T ss_pred cCCCcCCEEEEeeCCCH--HHHHHHHHHHHhcCCCcEEEEec
Confidence 23689999999987764 34555555433 45555665443
No 287
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.24 E-value=0.0012 Score=69.18 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=61.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. .. .++ +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v-~~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RV-MTMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------Ee-cCHHHHHhC
Confidence 5899999999999999999999999999999987654321 1121 00 112 34678
Q ss_pred CCEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCC
Q 009963 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS 263 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS 263 (521)
+|+||+|+... .++. +....++++++++..++
T Consensus 268 aDVVI~aTG~~-----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 268 GDIFVTATGNK-----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCEEEECCCCH-----HHHHHHHHhcCCCCCEEEEcCC
Confidence 99999987432 3443 45567889998875443
No 288
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.20 E-value=0.0014 Score=66.78 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=62.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++++|||+|.||...+..+.. ...+|.+||+++++.+...+++. +.|. .+....+. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHH
Confidence 3689999999999996665543 35689999999999876544332 1120 12223344 56
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+++||+||.|+|.... +|. .+.+++++.+.+..|.
T Consensus 190 v~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 190 VEGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred hccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence 8999999999986532 221 2346788877665554
No 289
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.18 E-value=0.0015 Score=59.94 Aligned_cols=77 Identities=25% Similarity=0.270 Sum_probs=56.6
Q ss_pred eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||+|.| |..+|..|.+.|..|++.+++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 68999999987 88899999999999999998853221 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
||+||.|++...-+..+ .+.++.++++.+..-.++
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdvd 122 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVPD 122 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCccc
Confidence 99999999765333333 245677777766554443
No 290
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.14 E-value=0.0018 Score=68.43 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=61.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence 6899999999999999999999999999999987643321 1121 0 1122 34688
Q ss_pred CCEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCCcCc
Q 009963 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~l~ 266 (521)
+|+||.+... +.++. +..+.++++++|+ |++...
T Consensus 310 ADIVI~atGt-----~~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATGN-----KDIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCCc-----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence 9999998632 23442 4555689999886 555444
No 291
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.13 E-value=0.0013 Score=65.83 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=51.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (521)
++|.|||+|-+|++++..|+..|. +|+++||+.++++...+.+...+ .. ..+....+ .+.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 689999999999999999999998 79999999988776543321110 00 01111112 23467
Q ss_pred CCCEEEEecccc
Q 009963 226 DVDMVIEAIIEN 237 (521)
Q Consensus 226 ~aDlVIeav~e~ 237 (521)
++|+||.|+|-.
T Consensus 192 ~aDiVInaTp~G 203 (284)
T PRK12549 192 AADGLVHATPTG 203 (284)
T ss_pred CCCEEEECCcCC
Confidence 889999998755
No 292
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.09 E-value=0.0012 Score=67.17 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=62.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCC-------CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT 216 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G-------~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (521)
.||+|+|+ |.+|+.++..|+..+ .+|.++|+++. .++. . .++-.+.. .....+.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~--------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-V--------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-e--------------eeehhhccccccCCce
Confidence 47999999 999999999998855 48999999753 1221 0 01100000 1112333
Q ss_pred cccC-cccccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 217 GVLD-YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 217 ~~~~-~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.+.+ ++++++||+||.+.-- |..+-+++...+.++++++++++..|.
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 3445 4889999999987511 111225555677787767777655554
No 293
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.07 E-value=0.001 Score=65.81 Aligned_cols=70 Identities=17% Similarity=0.317 Sum_probs=54.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|+|||. |.||..+|..|.++|++|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999999 99999999999999999999832111 12 2367
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+||+||.|++....++.. .+++++++++.+
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence 899999999876555443 378999987654
No 294
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.04 E-value=0.0024 Score=64.47 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=62.6
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++|+|||+|.||...+..+.. .+. +|.+|++++++.+...+++.. .+ + .+. ..+. +.+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~-~----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LG-P----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cC-C----------eeE-ECCHHHHh
Confidence 589999999999999998865 564 799999999988775543321 11 0 011 2333 467
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
.+||+||.|.|.... +|.. .++|++.|....|.
T Consensus 187 ~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~iGs~ 219 (304)
T PRK07340 187 EAVDLVVTATTSRTP----VYPE---AARAGRLVVAVGAF 219 (304)
T ss_pred hcCCEEEEccCCCCc----eeCc---cCCCCCEEEecCCC
Confidence 899999999986643 3332 35788877665554
No 295
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0089 Score=59.66 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=83.9
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (521)
-|||+||+|.||.+|+...++ .|++|. +-|++.+...++..+.-.--...++....+.....-..+.+..|.|.+.+
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~ 97 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELII 97 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhh
Confidence 489999999999999987654 598865 45888887766654321000000111001110011112344456655443
Q ss_pred --cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC-CcCcHHHHHHhhcCCCceeecccccccCCCCeEEEEeCC
Q 009963 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT-STIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (521)
Q Consensus 225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt-S~l~i~~ia~~~~~~~r~ig~hf~~P~~~~~lveiv~~~ 301 (521)
...|+||++.--..---+-.+. ......-++.-|. .-..+.-+..... +-.|+- +..+.
T Consensus 98 ~~~~IdvIIdATG~p~vGA~~~l~---Ai~h~KHlVMmNVEaDvtIGp~Lk~~A---d~~Gvi------------yS~~~ 159 (438)
T COG4091 98 ANDLIDVIIDATGVPEVGAKIALE---AILHGKHLVMMNVEADVTIGPILKQQA---DAAGVI------------YSGGA 159 (438)
T ss_pred cCCcceEEEEcCCCcchhhHhHHH---HHhcCCeEEEEEeeeceeecHHHHHHH---hhcCeE------------EeccC
Confidence 4568889886321111122233 3333344554443 2222222222111 112332 22333
Q ss_pred CCcHHHHHHHHHHHHhcCCeEEEecC
Q 009963 302 QTSPQVIVDLLDIGKKIKKTPIVVGN 327 (521)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~vvv~d 327 (521)
.-.|...-.+.+|.+.+|.+++..+.
T Consensus 160 GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 160 GDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred CCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 34566777889999999999999873
No 296
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.02 E-value=0.0091 Score=56.53 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=78.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||+|.||...+..|.++|.+|++++.+.. .+.. +.+.+.+. ...-.-..+++.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIR---------WKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEE---------EEecCCChhhcCC
Confidence 6899999999999999999999999999986532 1111 12222221 0001112346889
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~ 304 (521)
+|+||-|.. +.++...+... +..+ +++.+.. .|+. +.|+.|. ...++.--|.+.+.+
T Consensus 71 adlViaaT~-d~elN~~i~~~----a~~~-~lvn~~d------------~~~~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKED----LPEN-ALFNVIT------------DAES---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHHH----HHhC-CcEEECC------------CCcc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999998764 55566555443 3333 3443321 2222 2466664 345666667777788
Q ss_pred HHHHHHHHHHHHh
Q 009963 305 PQVIVDLLDIGKK 317 (521)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (521)
|.....+++-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8777776666554
No 297
>PRK04148 hypothetical protein; Provisional
Probab=97.01 E-value=0.0019 Score=56.42 Aligned_cols=95 Identities=24% Similarity=0.246 Sum_probs=65.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+||.+||+| -|..+|..|++.|++|+..|+|+++++.+.+. +. ....+.+ +..+.+--+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~------~~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL------NAFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC------eEEECcC-CCCCHHHHhcC
Confidence 589999999 88899999999999999999999988765432 10 0011111 13344557899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
|+|-+.=|. .++ +.-+-+|.+.+.-+.++..-++
T Consensus 79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCCC
Confidence 999988764 344 3445567777777777754433
No 298
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.97 E-value=0.0043 Score=53.58 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=58.9
Q ss_pred EEEEEeC-ChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009963 149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (521)
||+|||+ |.+|..++..+... ++++..+ +++.+..+... . ..+.+.. .+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~----~------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS----E------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH----H------HCccccc--------ccccccccCChh
Confidence 5899995 99999999998885 8887766 54432211111 0 0111110 0000111122
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
..++|+||.|+|.+... ++...+...+.+++++++.+|++..
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~ 104 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRM 104 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccC
Confidence 24899999999988543 3332344456789999998888754
No 299
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.96 E-value=0.0017 Score=64.72 Aligned_cols=72 Identities=21% Similarity=0.214 Sum_probs=51.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (521)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+ .+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 58999999999999999999999 6899999999887664432210 00 0111111 24567
Q ss_pred CCCEEEEecccch
Q 009963 226 DVDMVIEAIIENV 238 (521)
Q Consensus 226 ~aDlVIeav~e~~ 238 (521)
++|+||.|+|..+
T Consensus 185 ~~DivInaTp~g~ 197 (278)
T PRK00258 185 DFDLIINATSAGM 197 (278)
T ss_pred cCCEEEECCcCCC
Confidence 8999999998664
No 300
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.96 E-value=0.0012 Score=61.96 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
+++.|+|+ |.+|..++..|+..|++|++++++.++++...
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAA 69 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 58999996 99999999999999999999999988776544
No 301
>PRK05086 malate dehydrogenase; Provisional
Probab=96.96 E-value=0.0035 Score=63.55 Aligned_cols=95 Identities=21% Similarity=0.331 Sum_probs=57.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHh-C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccC-
Q 009963 148 KKVAILGG-GLMGSGIATALIL-S--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD- 220 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~-~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 220 (521)
+||+|||+ |.+|..++..+.. . +++++++|+++.. .+.. ++ .... .....+.. ..+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g~a-----lD--l~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PGVA-----VD--LSHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--ccee-----hh--hhcC--------CCCceEEEeCCCCH
Confidence 58999999 9999999998855 2 4689999998542 1100 00 0000 00012222 335
Q ss_pred cccccCCCEEEEeccc--------------chhhHHHHHHHHHhhCCCCceEEe
Q 009963 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 221 ~~~~~~aDlVIeav~e--------------~~~~k~~v~~~l~~~~~~~~il~s 260 (521)
++++++||+||.|.-. |..+-+++...+.++. ++++++.
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~iviv 116 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGI 116 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 5789999999998732 1113445556677664 5555543
No 302
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=96.92 E-value=0.00068 Score=73.35 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=39.8
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|+++|++++|+||+++||||+|||++++++++.++|++++..
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~ 229 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQ 229 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999886
No 303
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.90 E-value=0.0043 Score=63.30 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=63.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++|+|||+|.+|...+..++. .++ +|.+||+++++.++..+++...+ + + .+....++ +.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHH
Confidence 3589999999999998877653 454 89999999998876554432111 1 0 11223344 35
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+.++|+||.|.|... .++. ..+++++.+.+..|.
T Consensus 190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCCC
Confidence 789999999998663 3343 356888887766554
No 304
>PLN02494 adenosylhomocysteinase
Probab=96.89 E-value=0.0079 Score=63.43 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=65.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. . .. ++ +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-~------------vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-Q------------VL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-e------------ec-cHHHHHhh
Confidence 6899999999999999999989999999999987644332 1121 0 00 12 34678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC---cCcHHHHHHh
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGER 273 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS---~l~i~~ia~~ 273 (521)
+|+||++.... ..+..+..+.++++++++..+. .+....+.+.
T Consensus 310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 99999865432 2233555567899999875544 2344555443
No 305
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.88 E-value=0.0044 Score=64.68 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=79.1
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhccCCCc--chh--hcccC-----------------CCCCc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPW--VAT--LYKTD-----------------KIEPL 59 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~~~p~--~~~--~~~~~-----------------~~~~~ 59 (521)
|+|||++++|++|+++||+|++||++++ +.+.+++.++.... +. ... .+... .+...
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~ 278 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDD-PAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD 278 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCC-HHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999877 56666665543220 00 000 00000 00000
Q ss_pred hHHHHHHH------------HHHHHHHH-hCCCCchHHHHHHHHHHhhhCChHHHHHHHHHHHHHHh---CCHHHHHHHH
Q 009963 60 GEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLVH 123 (521)
Q Consensus 60 ~~~~~~~~------------~a~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~---~s~~a~~~~~ 123 (521)
. ...+++ .+++.+.. +.+.+.+...+.+.++.+...++++.++.|...-..++ .++|+.++++
T Consensus 279 s-v~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR 357 (407)
T PLN02851 279 T-VEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR 357 (407)
T ss_pred C-HHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 0 000111 12222222 12345567778889999998999999999999988887 4899999999
Q ss_pred HHHh
Q 009963 124 IFFA 127 (521)
Q Consensus 124 aF~~ 127 (521)
+-+-
T Consensus 358 A~LI 361 (407)
T PLN02851 358 ARLV 361 (407)
T ss_pred HHhc
Confidence 8765
No 306
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.88 E-value=0.0051 Score=69.03 Aligned_cols=103 Identities=9% Similarity=0.056 Sum_probs=78.7
Q ss_pred EEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc--HHHHHHhhcC-CCceeecccccccCC------------CCe
Q 009963 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPAHV------------MPL 294 (521)
Q Consensus 230 VIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~--i~~ia~~~~~-~~r~ig~hf~~P~~~------------~~l 294 (521)
||.|+|.. .-..++.++.+.+++++++++.+|+.. ++.+...+.. +.+|||.||+...+. ...
T Consensus 1 vila~Pv~--~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVA--QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHH--HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 68899865 346889999999999999999999863 3455555443 357999999975542 356
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec-Ccccchhh
Q 009963 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVN 334 (521)
Q Consensus 295 veiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~-d~~Gfi~n 334 (521)
+.+++.+.++++.++.+.+++..+|..++.+. +.+..++.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A 119 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFA 119 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHH
Confidence 77889999999999999999999999988886 33444433
No 307
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.87 E-value=0.0046 Score=53.72 Aligned_cols=103 Identities=20% Similarity=0.155 Sum_probs=57.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHh-CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGG-GLMGSGIATALIL-SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~-~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
+||+|+|+ |.||+.|+..+.+ .|++ |..+|++++.... +.+. .. .|.- ...+..+.+++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~--~~~~--------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----EL--AGIG--------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HH--CTSS--------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hh--hCcC--------CcccccchhHHHh
Confidence 48999999 9999999999988 6887 4566777622110 0000 00 0000 012333455543
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG 271 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia 271 (521)
+..+|+||+.. .++.-...++. .+..+..+++.|++++-+++.
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~---~~~~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEY---ALKHGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHH---HHHHT-EEEEE-SSSHHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHH---HHhCCCCEEEECCCCCHHHHH
Confidence 66799999987 33322333333 333477778888888765543
No 308
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=96.87 E-value=0.00069 Score=73.49 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=39.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchHHHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~l~~~ 42 (521)
|++||++++|+||+++||||+|||++++.+.+.++|++++..
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~ 233 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAA 233 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999886
No 309
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.86 E-value=0.013 Score=57.50 Aligned_cols=179 Identities=21% Similarity=0.192 Sum_probs=103.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|+|||.|+-|.+=|..|..+|++|++--+.... .++ ..+.|. ..-+--++++.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~k-----------A~~dGf-------------~V~~v~ea~k~ 74 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKK-----------AKEDGF-------------KVYTVEEAAKR 74 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHH-----------HHhcCC-------------EeecHHHHhhc
Confidence 69999999999999999999999998876654433 222 223332 11112356899
Q ss_pred CCEEEEecccchhhHHHHHH-HHHhhCCCCceEEecCCcCcHHHHHHhhcCCC--ceeecccccccC----------CCC
Q 009963 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERTYSKD--RIVGAHFFSPAH----------VMP 293 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~-~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~--r~ig~hf~~P~~----------~~~ 293 (521)
+|+|+..+|+. +..++++ +|.+.++++..|.- +.++.+..= ....|. .++=.-|-.|-+ ..|
T Consensus 75 ADvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~F-aHGfNihf~--~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP 149 (338)
T COG0059 75 ADVVMILLPDE--QQKEVYEKEIAPNLKEGAALGF-AHGFNIHFG--LIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVP 149 (338)
T ss_pred CCEEEEeCchh--hHHHHHHHHhhhhhcCCceEEe-ccccceecc--eecCCccCcEEEEcCCCCcHHHHHHHHccCCce
Confidence 99999999976 4567887 89999999987753 334433211 111121 122222222322 123
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEE---Ee--c-C-cccchhhc-hH----HHHHHHHH-HHHHcCCCHHH
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPI---VV--G-N-CTGFAVNR-MF----FPYTQAAF-LLVERGTDLYL 356 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~v---vv--~-d-~~Gfi~nR-il----~~~~~ea~-~l~~~G~~~~~ 356 (521)
.+--|..+ .+-...+.+..+.+.+|.+.. .. . + ....+..+ +| ..++..++ .|++.|.+|+-
T Consensus 150 ~LiAV~qD-~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~ 224 (338)
T COG0059 150 ALIAVHQD-ASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPEL 224 (338)
T ss_pred eEEEEEeC-CCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 33333333 344577888899999884322 11 1 1 12233333 22 23444444 35678887763
No 310
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.84 E-value=0.0023 Score=67.58 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~ 185 (521)
++|+|||+|.||..++..|...| .+|++++++.++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 68999999999999999999999 689999999887654
No 311
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.82 E-value=0.0041 Score=62.74 Aligned_cols=104 Identities=18% Similarity=0.091 Sum_probs=71.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
=++|+|+|+|.+|..||+.|...|..+.-+.+++...+...+ .+. . ..+-.+-+.+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~~-----------~--~~d~~~~~~~ 217 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YYA-----------E--FVDIEELLAN 217 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hcc-----------c--ccCHHHHHhh
Confidence 479999999999999999999889445555554443332211 110 0 1222355789
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc--CcHHHHHHhh
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT 274 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~--l~i~~ia~~~ 274 (521)
+|+||.|.|-+.+...-+=+++...++++++|+...=+ +.-.++.+++
T Consensus 218 sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 218 SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL 267 (336)
T ss_pred CCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence 99999999999887766667888899999988744333 3334565555
No 312
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.78 E-value=0.0075 Score=56.74 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=58.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.+|++||+|.+|..+...+-.. .+ .|.+||++.+++....+. .+ ....+++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~-------------~~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VG-------------RRCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cC-------------CCccccHHHH
Confidence 3799999999999999876543 23 589999999987654321 01 112245544
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
+.+.|+|+||...+ .++.-+.+-|++ .-+.|++|. +.+.
T Consensus 58 ~~~~DlvVEaAS~~-Av~e~~~~~L~~--g~d~iV~SV-GALa 96 (255)
T COG1712 58 IAEVDLVVEAASPE-AVREYVPKILKA--GIDVIVMSV-GALA 96 (255)
T ss_pred hhccceeeeeCCHH-HHHHHhHHHHhc--CCCEEEEec-hhcc
Confidence 48999999998643 233333333332 346777764 4454
No 313
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.77 E-value=0.0036 Score=64.98 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=35.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
.+|.|||+|.+|...+..+...|.+|+++|+++++++..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 579999999999999999999999999999999876653
No 314
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.77 E-value=0.0061 Score=62.24 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=59.4
Q ss_pred eEEEEEeCChhhHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++++|||+|.+|...+..++ ..++ +|++|++++++.+...+++...+ | + .+....+. +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHHh
Confidence 58999999999999999887 3664 79999999998877554432111 1 0 12223344 357
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
.+||+||.|.|.... ++. .+.+++++.+...
T Consensus 193 ~~aDiVvtaT~s~~p----~i~--~~~l~~g~~i~~v 223 (326)
T TIGR02992 193 SGADIIVTTTPSETP----ILH--AEWLEPGQHVTAM 223 (326)
T ss_pred ccCCEEEEecCCCCc----Eec--HHHcCCCcEEEee
Confidence 899999999876532 221 1235666655433
No 315
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.76 E-value=0.0047 Score=65.38 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=34.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~ 185 (521)
++|+|||+|.||..++..+...|. +|+++++++++++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~ 221 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE 221 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 689999999999999999999997 79999999987654
No 316
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.71 E-value=0.004 Score=66.83 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=51.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++++|+|+|.||.+++..|+..|++|+++|+++++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 5899999999999999999999999999999988766533211 000011 1122336789
Q ss_pred CEEEEecccch
Q 009963 228 DMVIEAIIENV 238 (521)
Q Consensus 228 DlVIeav~e~~ 238 (521)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998765
No 317
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.69 E-value=0.0029 Score=57.70 Aligned_cols=38 Identities=32% Similarity=0.311 Sum_probs=35.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
+||+|||+ |..|+-|+.-..+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 59999999 999999999999999999999999998754
No 318
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.65 E-value=0.006 Score=60.92 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=35.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
++|.|||+|-+|++++..|+..|. +|++++|+.++.+...
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 479999999999999999999997 6999999998876643
No 319
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.63 E-value=0.0012 Score=66.84 Aligned_cols=51 Identities=14% Similarity=-0.102 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccccccccccccccCcc---hhHHHHHHHHHhh
Q 009963 467 LWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELARE 519 (521)
Q Consensus 467 i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~ 519 (521)
+.+|++.++++||+.+++++..++.++| .++..++||| +|||+++|.+|-+
T Consensus 186 i~nr~~~~~~~Ea~~l~~~g~~~~~~id--~~~~~~~g~~~~~~Gp~~~~D~~Gl~ 239 (311)
T PRK06130 186 IANRIQHALAREAISLLEKGVASAEDID--EVVKWSLGIRLALTGPLEQRDMNGLD 239 (311)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhcCCCCccCCCHHHHhhhhccc
Confidence 8999999999999999999999999999 8888899998 6999999998854
No 320
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.63 E-value=0.0029 Score=54.64 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=58.6
Q ss_pred EEEEEe-CChhhHHHHHHHHhCC-Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-Ccccc
Q 009963 149 KVAILG-GGLMGSGIATALILSN-YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF 224 (521)
Q Consensus 149 kI~VIG-~G~mG~~iA~~la~~G-~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 224 (521)
||+||| .|.+|..+...|.++- ++ +.++.++.+.-.... .. ... . .....+.... +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~----~~----~~~--~------~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS----EV----FPH--P------KGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH----HT----TGG--G------TTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee----hh----ccc--c------ccccceeEeecchhHh
Confidence 799999 7999999999998853 34 455565552211100 00 000 0 0011222222 34568
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
.++|+||.|+|.. ..+++...+ +..++.++++++....+
T Consensus 65 ~~~Dvvf~a~~~~--~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALPHG--ASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SCHH--HHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCchh--HHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 9999999999865 344555544 45788888998876443
No 321
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.63 E-value=0.011 Score=57.64 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=44.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
+||+|||+|.||..++..+.+.+ ++ +.+++++++..+.... .....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 69999999999999999986542 44 4567887755443210 1223445655
Q ss_pred c--cCCCEEEEecccc
Q 009963 224 F--KDVDMVIEAIIEN 237 (521)
Q Consensus 224 ~--~~aDlVIeav~e~ 237 (521)
+ ..+|+||||...+
T Consensus 58 ll~~~~DlVVE~A~~~ 73 (267)
T PRK13301 58 LLAWRPDLVVEAAGQQ 73 (267)
T ss_pred HhhcCCCEEEECCCHH
Confidence 3 7899999998643
No 322
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.62 E-value=0.12 Score=52.53 Aligned_cols=40 Identities=28% Similarity=0.198 Sum_probs=33.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|+|+|+|-+|..-.+.....|.+|+.+|+++++++.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 5899999998776666665568999999999999987754
No 323
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.61 E-value=0.0013 Score=66.73 Aligned_cols=52 Identities=10% Similarity=-0.071 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcc---hhHHHHHHHHHhh
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKELARE 519 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~ 519 (521)
-+.+|++.++++||+.|+++++.++++|| ..+..+.||| +|||+++|.+|-+
T Consensus 184 fi~nri~~~~l~EAl~l~e~g~~~~e~iD--~a~~~g~G~~~~~~Gpf~~~D~~Gld 238 (314)
T PRK08269 184 YIVPRIQALAMNEAARMVEEGVASAEDID--KAIRTGFGLRFAVLGLLEFIDWGGCD 238 (314)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHhCCCCCccCcCHHHHHHhhhHH
Confidence 48999999999999999999999999999 8888899998 5999999998864
No 324
>PLN00203 glutamyl-tRNA reductase
Probab=96.55 E-value=0.0038 Score=67.37 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=36.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (521)
-++|+|||+|.||..++..|...|+ +|++++++.+.++..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 3689999999999999999999997 799999999887654
No 325
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.53 E-value=0.0062 Score=62.37 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
++|.|||+|.+|+.+|..|+++|+ +++++|.|.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999999999999999998 899999985
No 326
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.53 E-value=0.0081 Score=61.20 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=33.7
Q ss_pred CcccCCCCCHhHHHhCCCcceecCCchH------------HHHHHHHHHhhhcc
Q 009963 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH 42 (521)
Q Consensus 1 miltG~~i~A~eA~~~GLVd~vv~~~~l------------~~~A~~~a~~l~~~ 42 (521)
|+++|++++|++|+++||||+|||++++ ++.+.++++.+...
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 241 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE 241 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence 4789999999999999999999998877 55555666555443
No 327
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.52 E-value=0.0046 Score=58.55 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=30.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 589999999999999999999998 89999987
No 328
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.52 E-value=0.0066 Score=59.85 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=53.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~ 221 (521)
+||++||.|.+--+.-...... |..|..+|+++++.+.+.+-+...+. .. .++++. .| .
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5999999999966544433333 45788999999998877543331110 01 122221 11 1
Q ss_pred -ccccCCCEEEEecc--cchhhHHHHHHHHHhhCCCCceEEec
Q 009963 222 -ESFKDVDMVIEAII--ENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 222 -~~~~~aDlVIeav~--e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
.++.++|+|+.|.- .+.+-|.+++..|.+++++|++++.-
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 35789999999863 23446999999999999999988765
No 329
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.52 E-value=0.013 Score=59.96 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=51.5
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++|+|||+|.+|...+..+.. .+ .+|.+|++++++++...+++.+.+ | + .+....+. +.+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHHH
Confidence 589999999999998888875 45 489999999998887654432111 1 0 12223444 457
Q ss_pred cCCCEEEEecccc
Q 009963 225 KDVDMVIEAIIEN 237 (521)
Q Consensus 225 ~~aDlVIeav~e~ 237 (521)
.+||+||.|.|..
T Consensus 196 ~~aDiVi~aT~s~ 208 (330)
T PRK08291 196 AGADIIVTTTPSE 208 (330)
T ss_pred ccCCEEEEeeCCC
Confidence 8899999988764
No 330
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.49 E-value=0.044 Score=54.04 Aligned_cols=203 Identities=18% Similarity=0.228 Sum_probs=109.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (521)
|.||.-||+|..|+.-...++.. .++|+++|++..++..-...- +..++.-++. ..-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46899999999999887766654 468999999998876432110 1111111111 11134566777
Q ss_pred cc-cccCCCEEEEecc-------------cchhhHHHHHHHHHhhCCCCceEEecCCcCcHH---HHHHhhcCCCceeec
Q 009963 221 YE-SFKDVDMVIEAII-------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (521)
Q Consensus 221 ~~-~~~~aDlVIeav~-------------e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~---~ia~~~~~~~r~ig~ 283 (521)
.+ .++.+|+|+.+|- .|+..-...-+.+.+....+.|++ --|+.|+. .|...+.+. --|+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n--~~~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHN--SKGI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcC--CCCc
Confidence 64 5899999999882 233333444455666666677765 56777764 444444432 2356
Q ss_pred ccc---cccC----------CCCeEEEEeCCCCcH--HHHHHHHHHHHhc-CCeEEEecC-----cccchhhchHHHH--
Q 009963 284 HFF---SPAH----------VMPLLEIVRTNQTSP--QVIVDLLDIGKKI-KKTPIVVGN-----CTGFAVNRMFFPY-- 340 (521)
Q Consensus 284 hf~---~P~~----------~~~lveiv~~~~t~~--e~~~~~~~l~~~l-Gk~~vvv~d-----~~Gfi~nRil~~~-- 340 (521)
||- ||-- ..|=-.++.|..|.+ .+++.+..+...+ -+..+.... -.-...|-+++.-
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqris 228 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRIS 228 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHh
Confidence 662 3321 112223556655432 3344444444443 222333321 1223444444322
Q ss_pred -HHHHHHHHH-cCCCHHHHHHHH
Q 009963 341 -TQAAFLLVE-RGTDLYLIDRAI 361 (521)
Q Consensus 341 -~~ea~~l~~-~G~~~~~ID~a~ 361 (521)
+|....+-+ -|.+.+++-.+.
T Consensus 229 sins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 229 SINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred hhHHHHHHHHhcCCCHHHHHHHh
Confidence 333333333 577888887765
No 331
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.48 E-value=0.0078 Score=59.26 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=55.2
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.||+|+|+ |.||..++..+.+. +++++ ++|++++..... ... .+....+++.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~~------------~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GAL------------GVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CCC------------CccccCCHHHh
Confidence 58999998 99999999988764 67755 478887643321 000 1122345543
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i 270 (521)
+.++|+||++.+.+.. .++.. ..+..+.-++.-|.+++.+++
T Consensus 58 l~~~DvVid~t~p~~~--~~~~~---~al~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 58 LADADVLIDFTTPEAT--LENLE---FALEHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred ccCCCEEEECCCHHHH--HHHHH---HHHHcCCCEEEECCCCCHHHH
Confidence 4579999988865532 22222 223333433334555665543
No 332
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.47 E-value=0.023 Score=54.29 Aligned_cols=129 Identities=22% Similarity=0.254 Sum_probs=78.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++|.|||+|.++..=+..|++.|.+|+++..+ ++- .. +.+.|.++ .+.-.-+.+++.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el-~~-----------l~~~~~i~---------~~~r~~~~~dl~ 84 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEF-LD-----------LKKYGNLK---------LIKGNYDKEFIK 84 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHH-HH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence 48999999999999899999999999999554 332 11 12233321 111111235688
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t 303 (521)
++++||-|+ +|.++.+.+.+. +....+++.+... |.. +.|+.|+ ...+++--|.+.+.
T Consensus 85 g~~LViaAT-dD~~vN~~I~~~----a~~~~~lvn~vd~------------p~~---~dFi~PAiv~rg~l~IaIST~G~ 144 (223)
T PRK05562 85 DKHLIVIAT-DDEKLNNKIRKH----CDRLYKLYIDCSD------------YKK---GLCIIPYQRSTKNFVFALNTKGG 144 (223)
T ss_pred CCcEEEECC-CCHHHHHHHHHH----HHHcCCeEEEcCC------------ccc---CeEEeeeEEecCCEEEEEECCCc
Confidence 999999986 466666555543 3333344333221 111 2466664 34566666777777
Q ss_pred cHHHHHHHHHHHHh
Q 009963 304 SPQVIVDLLDIGKK 317 (521)
Q Consensus 304 ~~e~~~~~~~l~~~ 317 (521)
+|.....+++-++.
T Consensus 145 sP~lar~lR~~ie~ 158 (223)
T PRK05562 145 SPKTSVFIGEKVKN 158 (223)
T ss_pred CcHHHHHHHHHHHH
Confidence 88776666655544
No 333
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.47 E-value=0.047 Score=46.58 Aligned_cols=69 Identities=29% Similarity=0.354 Sum_probs=47.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.||+|||+|.+|......+.+. +.+| .++|++++..+...+. .| +...+++++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~~-------------~~~~~~~~~l 57 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------YG-------------IPVYTDLEEL 57 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TT-------------SEEESSHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------hc-------------ccchhHHHHH
Confidence 3899999999999999888776 4554 5889999887664211 11 123344433
Q ss_pred cc--CCCEEEEecccchh
Q 009963 224 FK--DVDMVIEAIIENVS 239 (521)
Q Consensus 224 ~~--~aDlVIeav~e~~~ 239 (521)
++ +.|+|+.++|....
T Consensus 58 l~~~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 58 LADEDVDAVIIATPPSSH 75 (120)
T ss_dssp HHHTTESEEEEESSGGGH
T ss_pred HHhhcCCEEEEecCCcch
Confidence 33 68999999887653
No 334
>PRK06046 alanine dehydrogenase; Validated
Probab=96.46 E-value=0.012 Score=59.97 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=60.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (521)
.++|+|||+|.||...+..+... ++ .|.+||++++..++..+++.+.+ + -.+....++++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHH
Confidence 35899999999999999888743 44 78999999998877654432110 1 01222344443
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+. +|+|+.|.|.... +|. .+.+++++.|.+..|.
T Consensus 192 l~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 192 CD-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred hh-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCCC
Confidence 44 9999999886532 222 1245677776555543
No 335
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.43 E-value=0.015 Score=58.94 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=63.7
Q ss_pred cceEEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 146 RVKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
..+.++|||+|.++......+..- + -+|.+|+++++..++...++.+. +. ..+....+. +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~ 191 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEE 191 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHH
Confidence 356899999999999998877653 3 48999999999988765543322 11 112334443 5
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
++++||+||.|.|.+..+ +. .+.+++++-|....|
T Consensus 192 av~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGa 226 (330)
T COG2423 192 AVEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGA 226 (330)
T ss_pred HhhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCC
Confidence 689999999999876432 21 234567776654433
No 336
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.31 E-value=0.034 Score=58.85 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=33.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
.++|.|||.|.+|.++|..|.+.|++|+++|.+++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 3689999999999999999999999999999887644
No 337
>PRK06153 hypothetical protein; Provisional
Probab=96.31 E-value=0.011 Score=60.59 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.+|+|||+|-.|+.++..|++.|. +++++|-|
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 489999999999999999999998 89999986
No 338
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.27 E-value=0.027 Score=54.48 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=74.7
Q ss_pred ccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhh---cC-CCceeecccccccCCCC
Q 009963 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT---YS-KDRIVGAHFFSPAHVMP 293 (521)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~---~~-~~r~ig~hf~~P~~~~~ 293 (521)
++|.++++++|++|.=.|..-. --.+++++.+++++++|++ ||-|+|...+...+ .| .-.+..+||-. +..++
T Consensus 133 sDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa-VPgt~ 209 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGA-VPEMK 209 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCC-CCCCC
Confidence 4456889999999999886542 2477888899999999884 77788776555433 32 22344455432 22344
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
.-..+.....+++.++.+.++.+..|+.+.++.
T Consensus 210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 333344456789999999999999999999885
No 339
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.26 E-value=0.007 Score=59.86 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=42.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF- 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 224 (521)
+||+|||+|.||..++..+.+. +.++..+ +++.. .+...+ .... .+..+++++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~--------~~~~-------------~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRR--------ALGE-------------AVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhh--------hhcc-------------CCeeeCCHHHhc
Confidence 5999999999999999998775 5555433 33221 111100 0000 12234555554
Q ss_pred cCCCEEEEecccch
Q 009963 225 KDVDMVIEAIIENV 238 (521)
Q Consensus 225 ~~aDlVIeav~e~~ 238 (521)
.++|+||||.+...
T Consensus 60 ~~~DvVve~t~~~~ 73 (265)
T PRK13303 60 QRPDLVVECAGHAA 73 (265)
T ss_pred cCCCEEEECCCHHH
Confidence 56899999998653
No 340
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.24 E-value=0.022 Score=45.95 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=28.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeC
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVILKEV 178 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~ 178 (521)
++++|+|.|.+|.+++..+... +.+|.+||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6899999999999999999998 578999987
No 341
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.21 E-value=0.0064 Score=59.89 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=65.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
.||+|||.|..|.--|+...--|-+|++.|+|.+++.+.-. .+ .+++ ..+.+...++ +.+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd----~f-----~~rv--------~~~~st~~~iee~v~~ 231 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD----LF-----GGRV--------HTLYSTPSNIEEAVKK 231 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH----hh-----Ccee--------EEEEcCHHHHHHHhhh
Confidence 58999999999999999888889999999999998876321 10 1111 0111111223 45899
Q ss_pred CCEEEEec--ccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 227 VDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 227 aDlVIeav--~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
+|+||-+| |-.. --+-++++..+.++|+++|++.
T Consensus 232 aDlvIgaVLIpgak-aPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 232 ADLVIGAVLIPGAK-APKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ccEEEEEEEecCCC-CceehhHHHHHhcCCCcEEEEE
Confidence 99999987 2211 1234567777788999988765
No 342
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.21 E-value=0.051 Score=55.80 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhC
Q 009963 148 KKVAILGGGLMGSGIATALILS 169 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~ 169 (521)
.+|+|+|+|+||..++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999988765
No 343
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.20 E-value=0.026 Score=57.28 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=62.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++++|||+|.++...+..+..- --+|.+|++++++.++..+.++ +.+ + .+....+. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-~----------~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-F----------AVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-C----------cEEEECCHHHH
Confidence 36899999999999988877653 2489999999999887553321 111 0 22234444 55
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+.+||+|+.|.+.... +|. .+.+++++.|....|.
T Consensus 190 v~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 190 AHAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGAD 224 (315)
T ss_pred hcCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCCC
Confidence 8999999998875533 332 1356788877655554
No 344
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.20 E-value=0.016 Score=57.48 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=55.0
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||.|. +|..+|..|...|..|++++.....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6899999987 999999999999999999986532211 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|++-..-+.. ..+++++++++..+.
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvGi~ 232 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVGNT 232 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcCCC
Confidence 9999999975422222 246888988876653
No 345
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.014 Score=57.99 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=52.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|+|+|-++.+++..|++.|. ++++++|+.+++++..+...+... .+. .....+.+...+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~------~~~----------~~~~~~~~~~~~ 190 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA------AVE----------AAALADLEGLEE 190 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc------ccc----------cccccccccccc
Confidence 689999999999999999999995 799999999998775543321110 000 001112233336
Q ss_pred CCEEEEecccch
Q 009963 227 VDMVIEAIIENV 238 (521)
Q Consensus 227 aDlVIeav~e~~ 238 (521)
+|+||.|+|-.+
T Consensus 191 ~dliINaTp~Gm 202 (283)
T COG0169 191 ADLLINATPVGM 202 (283)
T ss_pred cCEEEECCCCCC
Confidence 899999998765
No 346
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.18 E-value=0.025 Score=56.97 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=62.7
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++++|||+|.+|..-+..++.- .+ +|.+|++++++.++..+++.+.+ | -.+....+. +.
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHH
Confidence 36899999999999888877653 33 89999999999887654443211 1 023333444 56
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+.+||+|+.|.+.... +|. .+.++|++.+....|.
T Consensus 180 v~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 180 LRDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred HhcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCCC
Confidence 8999999998876533 221 1245677766555443
No 347
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.17 E-value=0.079 Score=50.34 Aligned_cols=130 Identities=25% Similarity=0.277 Sum_probs=84.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||+|..|..=+..|++.|.+|+++..+. +.+.. +.+.+.+.. +...-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence 589999999999999999999999999998776 22222 233333221 111223355677
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t~ 304 (521)
+++||-|+. |.++.+.+++...+ ..+++ |.. ..|.. +.|+.|. +..|+.--|.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~----~~i~v-Nv~-----------D~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARE----RRILV-NVV-----------DDPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHH----hCCce-ecc-----------CCccc---CceecceeeccCCeEEEEECCCCC
Confidence 999999875 56677777665444 33443 321 22332 4666675 346777677777778
Q ss_pred HHHHHHHHHHHHh
Q 009963 305 PQVIVDLLDIGKK 317 (521)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (521)
|.....+++-++.
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 8777776666555
No 348
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.17 E-value=0.008 Score=63.20 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=34.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (521)
++|.|||+|-||..++..|+..|. ++++++|+.++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~L 221 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKI 221 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 689999999999999999999996 799999998876553
No 349
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.13 E-value=0.011 Score=61.30 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=36.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~ 187 (521)
++|.|||+|-||..+|.+|..+| ..|++.+|+.+++....
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 57999999999999999999999 58999999999887643
No 350
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.12 E-value=0.011 Score=54.53 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=33.0
Q ss_pred EEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 150 I~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
|.|+|+ |.+|..++..|.+.|++|+++-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689997 999999999999999999999999987654
No 351
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.12 E-value=0.059 Score=62.58 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=52.1
Q ss_pred cccceEEEEEeCChhhHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 009963 144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE 209 (521)
Q Consensus 144 ~~~~~kI~VIG~G~mG~~iA~~la~~-G~~-------------V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~ 209 (521)
...++||+|||+|.||..++..|++. +++ |++.|++++.+++..+.. .+ ++
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~~----- 630 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-AE----- 630 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CC-Cc-----
Confidence 34578999999999999999999875 334 999999998776543211 01 00
Q ss_pred hhhccccc-ccCcc----cccCCCEEEEecccchh
Q 009963 210 KTISLLTG-VLDYE----SFKDVDMVIEAIIENVS 239 (521)
Q Consensus 210 ~~~~~i~~-~~~~~----~~~~aDlVIeav~e~~~ 239 (521)
-+.. ..|.+ .++++|+||.|+|....
T Consensus 631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 631 ----AVQLDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred ----eEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 0111 12222 24679999999998754
No 352
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.08 E-value=0.014 Score=59.20 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=54.0
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (521)
++++|||+|..+..-+..++. .++ +|.+|+++++++++..+++.+ + + -.+....+. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence 589999999999988887654 344 899999999988876544322 0 1 123344454 568
Q ss_pred cCCCEEEEecccch--hhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 KDVDMVIEAIIENV--SLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 ~~aDlVIeav~e~~--~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
++||+||.|.+... .+ |. .+.+++++.|.+..|.
T Consensus 191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence 99999999987664 22 21 2357788887766654
No 353
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.07 E-value=0.064 Score=48.61 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=73.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
++|.|||+|.+|...+..|...|++|++++.+ ..+...+ .+.+. ...-.-..+++.++
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-----------l~~i~---------~~~~~~~~~dl~~a 71 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-----------LPYIT---------WKQKTFSNDDIKDA 71 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-----------ccCcE---------EEecccChhcCCCc
Confidence 68999999999999999999999999999633 2222110 01110 00001112458899
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeecccccccC--CCCeEEEEeCCCCcH
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTSP 305 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~~--~~~lveiv~~~~t~~ 305 (521)
|+||-|. ++.++...+...- .... ++.+.. .|+. ..|+.|+. ..+++--|.+.+.+|
T Consensus 72 ~lViaaT-~d~e~N~~i~~~a----~~~~-~vn~~d------------~~~~---~~f~~pa~v~~~~l~iaisT~G~sP 130 (157)
T PRK06719 72 HLIYAAT-NQHAVNMMVKQAA----HDFQ-WVNVVS------------DGTE---SSFHTPGVIRNDEYVVTISTSGKDP 130 (157)
T ss_pred eEEEECC-CCHHHHHHHHHHH----HHCC-cEEECC------------CCCc---CcEEeeeEEEECCeEEEEECCCcCh
Confidence 9999876 4555544443322 2222 322221 1221 24566643 345555566667788
Q ss_pred HHHHHHHHHHHh
Q 009963 306 QVIVDLLDIGKK 317 (521)
Q Consensus 306 e~~~~~~~l~~~ 317 (521)
.....+++-++.
T Consensus 131 ~la~~lr~~ie~ 142 (157)
T PRK06719 131 SFTKRLKQELTS 142 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777666665544
No 354
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.05 E-value=0.0088 Score=62.56 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=32.1
Q ss_pred EEEEeCChhhHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 009963 150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G-~-~V~l~d~~~~~~~~~~ 187 (521)
|.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 4 8999999999987754
No 355
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.04 E-value=0.046 Score=53.02 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=73.7
Q ss_pred ccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHH---HHhhcC-CCceeecccccccCCCC
Q 009963 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI---GERTYS-KDRIVGAHFFSPAHVMP 293 (521)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~i---a~~~~~-~~r~ig~hf~~P~~~~~ 293 (521)
++|.++++++|++|.=.|..-. -..+++++.+.+++++|++ ||-|+|...+ .+.+.| .-.+..+||-. +..++
T Consensus 131 sDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa-VPgt~ 207 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGC-VPEMK 207 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCC-CCCCC
Confidence 4456889999999999986542 2477888889999999884 7778877644 444443 22344455532 22233
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEec
Q 009963 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (521)
Q Consensus 294 lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~ 326 (521)
-=-++.....+++.++.+.++.+..|+.+.++.
T Consensus 208 ~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 208 GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 222333456789999999999999999999885
No 356
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.03 E-value=0.035 Score=59.75 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=36.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6999999999999999998899999999999999988764
No 357
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.01 E-value=0.085 Score=44.75 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=58.7
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--cc
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--ES 223 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--~~ 223 (521)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+ .|. .-+.+. ++ + ..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------ccc----------ccccccchhhhHHhhcC
Confidence 579999999999999999977799999999998777542 221 011110 01 1 23
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+.+||.||.+.+++. ....+...+.+..+.-.|++-..
T Consensus 60 i~~a~~vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 60 IEKADAVVILTDDDE-ENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp GGCESEEEEESSSHH-HHHHHHHHHHHHTTTSEEEEEES
T ss_pred ccccCEEEEccCCHH-HHHHHHHHHHHHCCCCeEEEEEC
Confidence 688999999887663 33344444555455455665433
No 358
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.01 E-value=0.077 Score=53.64 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~-l~d~~~ 180 (521)
.||+|||.|.||..++..+.+. +++++ ++|+++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 5899999999999999988765 78876 479985
No 359
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.95 E-value=0.017 Score=59.26 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=31.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|.+|+.+|..|+.+|+ +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999999 999999974
No 360
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.90 E-value=0.026 Score=56.23 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=51.9
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||.|. .|.+|+..|...|..|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 5899999997 999999999999999999997432221 12468
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+|+||.|++...-+.. +.+++++++.+..
T Consensus 203 aDIvI~AtG~~~~v~~-------~~lk~gavViDvg 231 (283)
T PRK14192 203 ADIIVGAVGKPELIKK-------DWIKQGAVVVDAG 231 (283)
T ss_pred CCEEEEccCCCCcCCH-------HHcCCCCEEEEEE
Confidence 9999999953221211 3467888876543
No 361
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.87 E-value=0.019 Score=55.43 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=30.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc---EEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~---V~l~d~~ 179 (521)
+||.|+|+|.+|.+||..|...|.. |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999985 9999999
No 362
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.83 E-value=0.024 Score=58.91 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=52.1
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (521)
.++++|||+|.++......++.- .+ +|.+|+++++++++..+++...+ .|. ..+....+. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~-----~~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY-----PQI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-----CCC----------ceEEEeCCHHH
Confidence 46899999999999999887762 23 89999999999887654432211 010 013334444 5
Q ss_pred cccCCCEEEEeccc
Q 009963 223 SFKDVDMVIEAIIE 236 (521)
Q Consensus 223 ~~~~aDlVIeav~e 236 (521)
.+.+||+|+.|.+.
T Consensus 220 av~~ADIVvtaT~s 233 (379)
T PRK06199 220 VVRGSDIVTYCNSG 233 (379)
T ss_pred HHcCCCEEEEccCC
Confidence 58899999988853
No 363
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.82 E-value=0.024 Score=62.32 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=61.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
.+|.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.+. ...+-.|..+..+ +-....+++|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~----------~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEE----------IMQLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHH----------HHHhcCcccc
Confidence 579999999999999999999999999999999988775421 0000011111000 0001236799
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEe
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~s 260 (521)
|.||.+++++.+.. .+...+.+..+.-.|++-
T Consensus 483 ~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 483 RWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR 514 (558)
T ss_pred CEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence 99999998876533 233334444444445543
No 364
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.80 E-value=0.057 Score=55.37 Aligned_cols=96 Identities=11% Similarity=0.189 Sum_probs=60.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009963 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (521)
.++++|||+|..+..-+..+.. .. -+|.+|++++++.+...+++.+ .+ + .+....+. +.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-~----------~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-L----------RIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-C----------cEEEeCCHHHH
Confidence 3689999999999888765543 23 4899999999998876544321 11 0 12233444 55
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+++||+|+-|.+.... .-+|. .+.+++++.|....|.
T Consensus 191 v~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 191 VEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGGD 227 (346)
T ss_pred HhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCCC
Confidence 8999999999864320 01111 1346778766555543
No 365
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.77 E-value=0.018 Score=45.56 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=32.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
||.|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987655
No 366
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.77 E-value=0.025 Score=62.67 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=63.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~ 225 (521)
.+|.|+|.|.+|..++..|.+.|++|+++|.|+++++.+.+ .|.. ...+..+-..-+ ..+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK------VYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe------EEEeeCCCHHHHHhcCCc
Confidence 57999999999999999999999999999999998876532 1210 000000000001 2468
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
+||.||.+++++.. ...+...+.+..++-.|++-..
T Consensus 464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeC
Confidence 99999999987643 3344445555555556665443
No 367
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.76 E-value=0.036 Score=54.87 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.5
Q ss_pred eEEEEEe-CChhhHHHHHHHHh-CCCcEE-EEeCC
Q 009963 148 KKVAILG-GGLMGSGIATALIL-SNYPVI-LKEVN 179 (521)
Q Consensus 148 ~kI~VIG-~G~mG~~iA~~la~-~G~~V~-l~d~~ 179 (521)
.||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 5899999 59999999999886 477654 46743
No 368
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.72 E-value=0.048 Score=58.56 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=36.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6999999999999999999999999999999999877654
No 369
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.72 E-value=0.022 Score=56.78 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=36.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (521)
++|.|+|+|-.|++|+..|+..|. +|+++||+.++.+...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999999997 79999999988766443
No 370
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.66 E-value=0.085 Score=56.30 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=35.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|+|+|.+|..++..|...|++|+++|++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 489999999999999999999999999999999987654
No 371
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.11 Score=55.88 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=33.3
Q ss_pred cceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 146 ~~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 4578999999999999999999999999999987653
No 372
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.59 E-value=0.09 Score=53.86 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.1
Q ss_pred eEEEEEeCChhhHHHHHHHHh
Q 009963 148 KKVAILGGGLMGSGIATALIL 168 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~ 168 (521)
.+|+|+|.|++|++++..+.+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999998776
No 373
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.55 E-value=0.058 Score=47.85 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799999873
No 374
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.29 Score=52.78 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=31.8
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
-++|.|||+|..|.++|..|.+.|++|+++|.++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46899999999999999999999999999997653
No 375
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.46 E-value=0.016 Score=61.03 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=31.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.+|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999975
No 376
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.44 E-value=0.039 Score=53.39 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=78.5
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc-------------c
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS-------------L 214 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-------------~ 214 (521)
||.|||+|..|+.++..|+..|+ +++++|.|.=.......++ +-+.-.-|+-..+.+...+. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQf---lf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQF---LFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcccc---CCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999999999999999999998 7899988632211111000 00000011111111111111 1
Q ss_pred cccccC--cccccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEec-CCcCcHHHHHHhhcCCCceeecccccccCC
Q 009963 215 LTGVLD--YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN-TSTIDLNLIGERTYSKDRIVGAHFFSPAHV 291 (521)
Q Consensus 215 i~~~~~--~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sn-tS~l~i~~ia~~~~~~~r~ig~hf~~P~~~ 291 (521)
+....+ .+-+++.|+||.|+- +.+. +..+.+.-... +..+.+. +.+.. ..+.-..+........++..|...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~-G~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFK-GNAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCc-eEEEEEcCCCCCCcccCCCCCCCC
Confidence 110011 123688999999974 3443 33333332222 2334332 22211 011101111112333444333334
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHH
Q 009963 292 MPLLEIVRTNQTSPQVIVDLLDIGK 316 (521)
Q Consensus 292 ~~lveiv~~~~t~~e~~~~~~~l~~ 316 (521)
.|+.++-..+......++.+..++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 6777777777777777888777764
No 377
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.37 E-value=0.26 Score=52.61 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999986
No 378
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.31 E-value=0.13 Score=55.10 Aligned_cols=130 Identities=19% Similarity=0.304 Sum_probs=81.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (521)
++|.|||+|.++..=+..|.+.|.+|+++-.+ ++- . .+.+.|.++ .+.-.-..+++.
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~-~-----------~l~~~~~i~---------~~~~~~~~~dl~ 71 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF-T-----------AWADAGMLT---------LVEGPFDESLLD 71 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-H-----------HHHhCCCEE---------EEeCCCChHHhC
Confidence 68999999999999899999999999998543 331 1 122333321 111111235688
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHHHHHHhhcCCCceeeccccccc--CCCCeEEEEeCCCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~~ia~~~~~~~r~ig~hf~~P~--~~~~lveiv~~~~t 303 (521)
++++||-|+ +|.++.+.+.+ .|....+++.+.. .|+ .++|+.|. ...+++--|.+...
T Consensus 72 ~~~lv~~at-~d~~~n~~i~~----~a~~~~~lvN~~d------------~~~---~~~f~~pa~~~~g~l~iaisT~G~ 131 (457)
T PRK10637 72 TCWLAIAAT-DDDAVNQRVSE----AAEARRIFCNVVD------------APK---AASFIMPSIIDRSPLMVAVSSGGT 131 (457)
T ss_pred CCEEEEECC-CCHHHhHHHHH----HHHHcCcEEEECC------------Ccc---cCeEEEeeEEecCCEEEEEECCCC
Confidence 999998885 45556555544 3444456653332 121 23466664 45677777888888
Q ss_pred cHHHHHHHHHHHHhc
Q 009963 304 SPQVIVDLLDIGKKI 318 (521)
Q Consensus 304 ~~e~~~~~~~l~~~l 318 (521)
+|.....+++-++.+
T Consensus 132 sP~~a~~lr~~ie~~ 146 (457)
T PRK10637 132 SPVLARLLREKLESL 146 (457)
T ss_pred CcHHHHHHHHHHHHh
Confidence 888877777766654
No 379
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.29 E-value=0.036 Score=55.54 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~ 181 (521)
+++.|+|+|-+|.+|+..|+..|+. |++++|+.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999996 999999973
No 380
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=95.26 E-value=0.031 Score=58.34 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=33.9
Q ss_pred eEEEEEeCChhhHHH-HHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGI-ATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~i-A~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
+||.++|+|.||++. ...|.++|++|+++|++++.++...
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~ 41 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN 41 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence 489999999999865 7888889999999999888666543
No 381
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.26 E-value=0.065 Score=53.17 Aligned_cols=39 Identities=31% Similarity=0.238 Sum_probs=34.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 186 (521)
+++.|+|+|-.+.+++..|+..|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 599999999877653
No 382
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.21 E-value=0.12 Score=54.71 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=26.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--------CC--c-EEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILS--------NY--P-VILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--------G~--~-V~l~d~~~~~ 182 (521)
.+|+|||.|+||.+++..+.++ |. + +.++|++.+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~ 49 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK 49 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh
Confidence 5899999999999998877543 33 3 4566888664
No 383
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.21 E-value=0.053 Score=45.32 Aligned_cols=74 Identities=27% Similarity=0.463 Sum_probs=49.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (521)
++|.|||+|.+|..=+..|.+.|.+|+++..+.+..+ +.++ +. ...+ +++.+
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i~----------~~-~~~~~~~l~~ 60 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLIQ----------LI-RREFEEDLDG 60 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSCE----------EE-ESS-GGGCTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHHH----------HH-hhhHHHHHhh
Confidence 6899999999999999999999999999998861111 1111 00 1112 46889
Q ss_pred CCEEEEecccchhhHHHHHHHHH
Q 009963 227 VDMVIEAIIENVSLKQQIFADLE 249 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~ 249 (521)
+|+||.|. ++.++.+.+.+...
T Consensus 61 ~~lV~~at-~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 61 ADLVFAAT-DDPELNEAIYADAR 82 (103)
T ss_dssp ESEEEE-S-S-HHHHHHHHHHHH
T ss_pred heEEEecC-CCHHHHHHHHHHHh
Confidence 99999765 45666666665443
No 384
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.18 E-value=0.076 Score=51.29 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 479999999999999999999998 899999764
No 385
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.15 E-value=0.059 Score=55.92 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.+|.|||+|.+|+.++..|+..|+ +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 479999999999999999999997 89999987
No 386
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.13 E-value=0.062 Score=53.77 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (521)
+++.|||+|-.+++|+..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 579999999999999999999997 8999999965
No 387
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.12 E-value=0.064 Score=59.65 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=61.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--c--cc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y--ES 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~--~~ 223 (521)
++|-|+|.|.+|..+++.|.+.|++++++|.|+++++.+.+ .|.- -..+. .+.. + ..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GD--at~~~~L~~ag 461 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGMK------VFYGD--ATRMDLLESAG 461 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCCe------EEEEe--CCCHHHHHhcC
Confidence 68999999999999999999999999999999999887542 1210 00000 0110 1 24
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEE
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~ 259 (521)
++++|+||.++.++.. ...+...+.+..++-.|++
T Consensus 462 i~~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 462 AAKAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CCcCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence 6789999999866543 3344444555444445554
No 388
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.10 E-value=1.1 Score=44.82 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=28.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~ 186 (521)
++|+|+|+|-.| .+|..++++ |++|+++|.+..+-+.+
T Consensus 183 ~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 183 KWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEA 221 (360)
T ss_pred cEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHH
Confidence 689999998766 456556655 99999999997554443
No 389
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.09 E-value=0.1 Score=52.68 Aligned_cols=198 Identities=17% Similarity=0.156 Sum_probs=100.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--------CCcEEEE---eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 009963 147 VKKVAILGGGLMGSGIATALILS--------NYPVILK---EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--------G~~V~l~---d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (521)
..+|+|+|.|++|++++..+.++ |.++.+. |++...... . .+... ......+..
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~-~-~~~~~-~~~~~~~~~------------ 67 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRD-L-DLLNA-EVWTTDGAL------------ 67 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhccc-c-cccch-hhheecccc------------
Confidence 46899999999999999988765 4454443 444333210 0 00000 000000000
Q ss_pred ccccCcccccCCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHH--HHHHhhcCCCceeecccccccCCC
Q 009963 216 TGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLN--LIGERTYSKDRIVGAHFFSPAHVM 292 (521)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~--~ia~~~~~~~r~ig~hf~~P~~~~ 292 (521)
....+.....+.|+|+|+++.+.+-.+. ...+.+.+..+. +++.|-..+... +|.+.... -|.+|+.-+.++
T Consensus 68 ~~~~~~~~~~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~----~g~~l~yEAtV~ 142 (333)
T COG0460 68 SLGDEVLLDEDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEK----NGVKLLYEATVG 142 (333)
T ss_pred cccHhhhccccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHH----hCCeEEEEeeec
Confidence 0001122346788999999987776665 555555555555 444554433332 44443321 244444333322
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCeEEEecCcccchhhchHHHHHHHHHHHH-HcCCCHHHHHHHHHhcCCC-ccH
Q 009963 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLV-ERGTDLYLIDRAITKFGMP-MGP 370 (521)
Q Consensus 293 ~lveiv~~~~t~~e~~~~~~~l~~~lGk~~vvv~d~~Gfi~nRil~~~~~ea~~l~-~~G~~~~~ID~a~~~~g~p-~GP 370 (521)
.| --.+..+++.+. |-....+.. |+ ....|..+.-+ +++.+.+|+-+-.+.+||. -=|
T Consensus 143 ------gG----iPiI~~lr~~l~--g~~I~~i~G----Il----NGT~NyIlt~m~~~~~~f~dal~eAq~lGyAE~DP 202 (333)
T COG0460 143 ------GG----IPIIKLLRELLA--GDEILSIRG----IL----NGTTNYILTRMEEGGLSFEDALAEAQELGYAEADP 202 (333)
T ss_pred ------cC----cchHHHHHhhcc--cCceEEEEE----EE----eccHHHHHHHHHccCCCHHHHHHHHHHcCCCCCCC
Confidence 11 113444555444 444444332 22 22334444333 4445777766666666762 112
Q ss_pred HHHhhhcCchHHHHHh
Q 009963 371 FRLADLVGFGVAIATG 386 (521)
Q Consensus 371 f~~~D~~Gld~~~~~~ 386 (521)
..|.-|+|..+++.
T Consensus 203 --t~DleG~DaA~Kl~ 216 (333)
T COG0460 203 --TDDLEGIDAARKLV 216 (333)
T ss_pred --CCCccchHHHHHHH
Confidence 47899999987753
No 390
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.08 E-value=0.06 Score=53.12 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 479999999999999999999995 899999874
No 391
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.08 E-value=0.076 Score=55.43 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=49.5
Q ss_pred eEEEEEeCChhhHHHHH-HHHh-----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009963 148 KKVAILGGGLMGSGIAT-ALIL-----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~-~la~-----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (521)
.||+|||+|+.+..--. .+.. .+.++.++|+++++++. +....+++++.-... -++..++|.
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~----i~~~~~~~v~~~g~~--------~kv~~ttd~ 71 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI----IAILAKKLVEEAGAP--------VKVEATTDR 71 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH----HHHHHHHHHHhhCCC--------eEEEEecCH
Confidence 58999999987655322 2222 25689999999998873 223333444432111 246667776
Q ss_pred -ccccCCCEEEEec
Q 009963 222 -ESFKDVDMVIEAI 234 (521)
Q Consensus 222 -~~~~~aDlVIeav 234 (521)
+++.+||+||.++
T Consensus 72 ~eAl~gAdfVi~~~ 85 (442)
T COG1486 72 REALEGADFVITQI 85 (442)
T ss_pred HHHhcCCCEEEEEE
Confidence 6799999999886
No 392
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.05 E-value=0.2 Score=54.10 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
No 393
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.03 E-value=0.021 Score=58.95 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 899999874
No 394
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.02 E-value=0.24 Score=52.78 Aligned_cols=41 Identities=37% Similarity=0.421 Sum_probs=37.2
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 47899999999999999999999999999999999876643
No 395
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.02 E-value=0.043 Score=52.99 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|..|+.+|..|++.|+ +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 889998763
No 396
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.02 E-value=0.053 Score=52.79 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~ 181 (521)
.||.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 589999999999999999999997 8899998753
No 397
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.01 E-value=0.013 Score=58.38 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=28.5
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999998 78888865
No 398
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.93 E-value=0.067 Score=55.00 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=57.3
Q ss_pred ceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--c
Q 009963 147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--E 222 (521)
Q Consensus 147 ~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~ 222 (521)
+.||+|||+ |.+|..++..+.+. +++++.+-.+.+..+... ..+ +.+.. . .... ..++ .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~----~~~------~~~~~-----~-~~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLS----DVH------PHLRG-----L-VDLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchH----HhC------ccccc-----c-cCce-eecCCHH
Confidence 469999997 99999999999876 677655433322211110 000 00000 0 0000 1111 1
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
...++|+|+.|+|.... .++..++ ...++.++++++...++
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence 35689999999997643 2333333 34578899999877653
No 399
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.91 E-value=0.06 Score=53.42 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=53.7
Q ss_pred eEEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009963 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (521)
Q Consensus 148 ~kI~VIG~G~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (521)
++|.|||.|.. |..+|..|.+.|..|+++.... .++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence 68999999877 9999999999999999875322 122 2467
Q ss_pred CCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 226 ~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
+||+||.|++-.- ++.. ..+++++++++...
T Consensus 201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVGi 231 (285)
T PRK14189 201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVGM 231 (285)
T ss_pred hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEccc
Confidence 8999999998432 3332 56889999876553
No 400
>PRK07877 hypothetical protein; Provisional
Probab=94.87 E-value=0.045 Score=61.33 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=28.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~--~V~l~d~~~ 180 (521)
.+|+|||+| .|+.+|..|+++|. +++++|.|.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 589999999 89999999999995 899999864
No 401
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.84 E-value=0.14 Score=52.61 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=55.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hcccccccCcc-c
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYE-S 223 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~-~ 223 (521)
.||+|+|+|.||..++..+... +++|+. .|.+++......++. .++. .+... ...... -..+....+++ .
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccCc-cccccccCCceEEcCChhHh
Confidence 5899999999999999988754 566654 465654333221110 0000 00000 000000 01122333333 3
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
+.++|+||+|.+.... .+... .++..++.+++|+|.
T Consensus 76 ~~~vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence 5789999999987643 22222 333446777777764
No 402
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.84 E-value=0.065 Score=52.35 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 899998863
No 403
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.76 E-value=0.07 Score=54.10 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~ 183 (521)
+||.|+|+ |.+|+.++..|.++|++|++.+|+.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 48999996 9999999999999999999999997643
No 404
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.75 E-value=0.023 Score=59.17 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.+|.|||+|..|+.++..|++.|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 579999999999999999999998 89999988
No 405
>PRK08328 hypothetical protein; Provisional
Probab=94.69 E-value=0.037 Score=53.53 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=31.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~ 182 (521)
.+|.|||+|..|+.++..|++.|. +++++|.+.-.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 479999999999999999999998 79999977533
No 406
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.63 E-value=0.072 Score=48.29 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=48.9
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+ ..|..++..|.+.|..|++++.....++ +.+++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 689999996 5899999999999999999886543322 23578
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
||+||.|+....-++. ..+++++++++.....
T Consensus 80 ADIVVsa~G~~~~i~~-------~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIKA-------DWIKPGAVVIDVGINY 111 (160)
T ss_dssp SSEEEE-SSSTT-B-G-------GGS-TTEEEEE--CEE
T ss_pred ccEEeeeecccccccc-------ccccCCcEEEecCCcc
Confidence 9999999975543433 3578999988766544
No 407
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.54 E-value=0.099 Score=51.84 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=52.7
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||.| ..|..+|..|.+.|..|+++......+. +.+++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 689999999 9999999999999999999864332221 23578
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.|+.-..-++. ..+++++++++..
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVIDvG 229 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVVDIG 229 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEEEee
Confidence 9999999964432322 3468899887654
No 408
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.52 E-value=0.12 Score=49.89 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=28.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEE-EEeC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVI-LKEV 178 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~-l~d~ 178 (521)
++|+|.|.|.+|..+|..|...|..|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 689999999999999999999999988 7787
No 409
>PLN03075 nicotianamine synthase; Provisional
Probab=94.48 E-value=0.17 Score=50.48 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=66.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-C---
Q 009963 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-D--- 220 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~--- 220 (521)
-++|+.||.|..|-.-...++.. +-.++.+|++++.++.+++.+.+. .| + ..++++.. |
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g-L--------~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD-L--------SKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC-c--------cCCcEEEECchhh
Confidence 36899999998866543333333 346999999999998877543210 11 1 11222211 1
Q ss_pred -cccccCCCEEEEecccc--hhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 221 -YESFKDVDMVIEAIIEN--VSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 221 -~~~~~~aDlVIeav~e~--~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
.....+.|+|+..+--. .+-|++++..+.+.++|+.++..-++
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 12356899999886322 24588999999999999998876553
No 410
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.47 E-value=0.12 Score=45.72 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=54.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|+|- ...|..++..|.+.|..|++++.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 58999998 56699999999999999999986432221 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|+.-..-++.+ .+++++++.+....
T Consensus 72 ADIVvsAtg~~~~i~~~-------~ikpGa~Vidvg~~ 102 (140)
T cd05212 72 ADVVVVGSPKPEKVPTE-------WIKPGATVINCSPT 102 (140)
T ss_pred CCEEEEecCCCCccCHH-------HcCCCCEEEEcCCC
Confidence 99999999766444433 47899998765543
No 411
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.47 E-value=0.084 Score=51.31 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=28.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCC-----------CcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G-----------~~V~l~d~~~ 180 (521)
.||.|||+|-.|+.++..|++.| .+++++|.|.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 58999999999999999999874 3899999763
No 412
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.45 E-value=0.042 Score=57.85 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|.+|.++|..|+++|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3799999999999999999999999999999753
No 413
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.40 E-value=0.16 Score=47.86 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 589999999999999999999998 699999873
No 414
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.37 E-value=0.41 Score=51.02 Aligned_cols=34 Identities=26% Similarity=0.172 Sum_probs=31.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|+|+|.+|.++|..|++.|++|++.|.+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 5799999999999999999999999999998764
No 415
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.37 E-value=0.03 Score=56.68 Aligned_cols=49 Identities=6% Similarity=-0.272 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccccccccccccccCcc---hhHHHHHHHH
Q 009963 466 LLWAWVFHLTGEESCSGLTLLDRSTFTHDWRNGQACTGNFL---SHVLSWLKEL 516 (521)
Q Consensus 466 ~i~~rll~~~vnea~~~l~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~ 516 (521)
-|.+|++.++++||+.++++++.++++|| ..+..+.|++ +||+.+.|..
T Consensus 188 ~i~nrl~~a~~~EA~~l~~~g~~~~~~id--~~~~~~~g~~~~~~gp~~~~d~~ 239 (308)
T PRK06129 188 FVLNRLQGALLREAFRLVADGVASVDDID--AVIRDGLGLRWSFMGPFETIDLN 239 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHHhccCCCccCcCHHHHHhcc
Confidence 48999999999999999999999999999 8778888987 8999999864
No 416
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.36 E-value=0.034 Score=60.65 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~ 179 (521)
.||.|||+|..|+.+|..|+..|+ +++++|.+
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 589999999999999999999998 78999875
No 417
>PRK08223 hypothetical protein; Validated
Probab=94.34 E-value=0.046 Score=54.30 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=30.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|||+|-+|+.++..|+.+|+ +++++|-|.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999998 899999874
No 418
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.30 E-value=0.082 Score=50.57 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=33.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|+|+ |.+|..++..|++.|++|++.+++++....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 57889987 999999999999999999999999876544
No 419
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.28 E-value=0.12 Score=44.30 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=50.3
Q ss_pred eEEEEEe----CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG----~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
++|+||| -+..|.-+...|.++|++|+.++...+.+. .+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----------------------------G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----------------------------GIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----------------------------TEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----------------------------cEEeeccccC
Confidence 5799999 588999999999999999999886654321 1122334444
Q ss_pred c-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceE
Q 009963 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL 258 (521)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il 258 (521)
. ...|+++.++|.+. --++++++.+. ....++
T Consensus 52 ~p~~iDlavv~~~~~~--~~~~v~~~~~~-g~~~v~ 84 (116)
T PF13380_consen 52 IPEPIDLAVVCVPPDK--VPEIVDEAAAL-GVKAVW 84 (116)
T ss_dssp CSST-SEEEE-S-HHH--HHHHHHHHHHH-T-SEEE
T ss_pred CCCCCCEEEEEcCHHH--HHHHHHHHHHc-CCCEEE
Confidence 4 68999999997553 34677776654 333444
No 420
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.16 E-value=0.13 Score=52.30 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.3
Q ss_pred EEEEEeCChhhHHHHHHHHhC
Q 009963 149 KVAILGGGLMGSGIATALILS 169 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~ 169 (521)
||+|+|.|++|++++..+.+.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 899999999999999998773
No 421
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.15 E-value=0.18 Score=51.95 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=34.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~ 188 (521)
+|.|+|+|.+|-..+..+...|. +|++.|+++++++.+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 89999999999988777777885 78888999999988753
No 422
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.10 E-value=0.15 Score=50.42 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=55.2
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+ ..|..+|..|...|..|+.+..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 589999998 8899999999999999999987654332 23568
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||-|++-..-++.+ .+++++++++....
T Consensus 196 ADIvI~Avgk~~lv~~~-------~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFITPD-------MVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccCHH-------HcCCCcEEEEeecc
Confidence 99999999633223333 36899998876543
No 423
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.07 E-value=0.3 Score=48.96 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=55.5
Q ss_pred eEEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcccccccCcccc
Q 009963 148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESF 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~ 224 (521)
.||+|||+|.+|......+.+. ++++ .++|+|++....... .+.|.-. ....+..+. ..++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 5899999999999977776654 5565 577998864321110 1123211 011111110 1124
Q ss_pred cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcC
Q 009963 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (521)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l 265 (521)
.+.|+|+++.+.... .+... .....++.+.++++..
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a~---~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHAA---KLREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCHHHH--HHHHH---HHHHcCCeEEECCccc
Confidence 679999999986543 22222 2345678888888753
No 424
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=94.06 E-value=0.12 Score=54.47 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=79.6
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc------c
Q 009963 149 KVAILGGGLMGSGIATALILSNY------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL------T 216 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i------~ 216 (521)
||.|||+|..|+.++..|+..|+ +++++|.|.=.......++ +-+.-.-|+-..+.+.+.+..+ .
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQf---Lf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQF---LFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCc---cCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 58999999999999999999998 8999997642221111000 0000011111111111111111 1
Q ss_pred ccc--------C---cccccCCCEEEEecccchhhHHHHHHHHHhhCCCCc-eEEecCCcCcHHHHHHhhcCCCceeecc
Q 009963 217 GVL--------D---YESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYSKDRIVGAH 284 (521)
Q Consensus 217 ~~~--------~---~~~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~-il~sntS~l~i~~ia~~~~~~~r~ig~h 284 (521)
... + .+-+++.|+||.|+- +.+.+..+-+..... +. ++-+.|.+.. ....-.+++-...-+..
T Consensus 78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alD-n~~aR~~vn~~C~~~---~iPli~~gt~G~~-G~v~v~iP~~te~y~~~ 152 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWEKLDGVANALD-NVDARMYVDRRCVYY---RKPLLESGTLGTK-GNTQVVIPHLTESYSSS 152 (435)
T ss_pred EEecccChhhhhhhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEecccce-eEEEEEeCCCCCCccCC
Confidence 100 0 122578999999973 344443332322221 22 3333333221 00000011100111222
Q ss_pred cccccCCCCeEEEEeCCCCcHHHHHHHHHHHHhc
Q 009963 285 FFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKI 318 (521)
Q Consensus 285 f~~P~~~~~lveiv~~~~t~~e~~~~~~~l~~~l 318 (521)
.-.|....|..++-..+..-+-.++.+++++..+
T Consensus 153 ~~p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~l 186 (435)
T cd01490 153 RDPPEKSIPLCTLKNFPNAIEHTIQWARDEFEGL 186 (435)
T ss_pred CCCCCCCCCCccccCCCCCchHHHHHHHHHHHHH
Confidence 2122334677778777778888999999998875
No 425
>PLN00016 RNA-binding protein; Provisional
Probab=94.00 E-value=0.11 Score=54.06 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.2
Q ss_pred cceEEEEE----eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 146 RVKKVAIL----GG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 146 ~~~kI~VI----G~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
..+||.|+ |+ |.+|..++..|+++|++|++++++.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 34789999 76 999999999999999999999998765
No 426
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.95 E-value=0.3 Score=51.66 Aligned_cols=36 Identities=28% Similarity=0.207 Sum_probs=33.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
.+||.|+|.|.-|.+.|..|.+.|++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 579999999999999999999999999999988765
No 427
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.95 E-value=0.17 Score=48.43 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
++|+|.|.|.+|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 699999999999999999999987 677789877
No 428
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.92 E-value=0.077 Score=40.72 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=27.2
Q ss_pred EEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 152 ILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 152 VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|||+|.-|...|..|+++|++|+++|.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999998764
No 429
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.91 E-value=0.069 Score=54.30 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
.|+|||+|..|.++|..|++.|++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999998
No 430
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=93.88 E-value=0.17 Score=51.00 Aligned_cols=87 Identities=24% Similarity=0.209 Sum_probs=59.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (521)
+++.|.|.|-.|.++|..+...|..|.++++||=.+-++ .++-+...+-.++...+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 567888999999999999999999999999999643222 12222222223456788
Q ss_pred CEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 228 DlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
|++|.|.-...-+..+ -...+++++|++ |..
T Consensus 266 DifiT~TGnkdVi~~e----h~~~MkDgaIl~-N~G 296 (420)
T COG0499 266 DIFVTATGNKDVIRKE----HFEKMKDGAILA-NAG 296 (420)
T ss_pred CEEEEccCCcCccCHH----HHHhccCCeEEe-ccc
Confidence 9999987654333332 233578888886 544
No 431
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=93.84 E-value=0.61 Score=43.27 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=31.5
Q ss_pred eEEEEE-eCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAIL-GGG-LMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VI-G~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
.|+++| |+| -+|.+|++.|+++|+.|.+.|++.+.++...
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata 55 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA 55 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence 455555 553 5799999999999999999999988665543
No 432
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.83 E-value=0.28 Score=47.76 Aligned_cols=39 Identities=31% Similarity=0.361 Sum_probs=34.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|+|+ |.+|..++..|+.+|++|++.+++++.++..
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT 51 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 58999987 9999999999999999999999998766543
No 433
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=93.83 E-value=0.38 Score=46.09 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFL 183 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~ 183 (521)
.+|.|+|.|-.|+-.+..|++.|+ +++++|.|.=.+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 489999999999999999999998 889998875433
No 434
>PRK05868 hypothetical protein; Validated
Probab=93.82 E-value=0.058 Score=56.10 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=33.0
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
|++|.|||+|.-|...|..|+++|++|+++|++++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 468999999999999999999999999999988653
No 435
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.82 E-value=0.11 Score=52.31 Aligned_cols=32 Identities=22% Similarity=0.576 Sum_probs=29.3
Q ss_pred EEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 68999999999999999999998 899999764
No 436
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.27 Score=48.55 Aligned_cols=110 Identities=20% Similarity=0.274 Sum_probs=66.1
Q ss_pred HHHHhhccCCCCCCCCCCCCCcccceEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Q 009963 123 HIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKG 201 (521)
Q Consensus 123 ~aF~~kr~~~k~~~~~~~~~~~~~~~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g 201 (521)
.+||.+....|..+ +-|.|||+|-.|+-.+..|++.|+ .+.++|.++=.+.....+. .+.+..-|
T Consensus 61 ~aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs---~Atl~DVG 126 (430)
T KOG2018|consen 61 YAFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHS---CATLADVG 126 (430)
T ss_pred HhhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhh---hhhHhhcC
Confidence 47887766555321 358899999999999999999998 6888888776555433221 11122223
Q ss_pred CCCHHHHHhhhcccc-----------ccc-Cccc--ccCCCEEEEecccchhhHHHHHHH
Q 009963 202 KMTQEKFEKTISLLT-----------GVL-DYES--FKDVDMVIEAIIENVSLKQQIFAD 247 (521)
Q Consensus 202 ~~~~~~~~~~~~~i~-----------~~~-~~~~--~~~aDlVIeav~e~~~~k~~v~~~ 247 (521)
.-...-....+..|. ++. +-++ ..+-|+|++|+ ++.+.|..+++-
T Consensus 127 ~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y 185 (430)
T KOG2018|consen 127 TPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEY 185 (430)
T ss_pred CchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHH
Confidence 222222222222221 121 2222 47899999998 567777777653
No 437
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.81 E-value=0.072 Score=46.80 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=29.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
+||.|+|+|.+|+.++..|++.|+ +++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 589999999999999999999998 799999763
No 438
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.71 E-value=0.18 Score=52.54 Aligned_cols=101 Identities=18% Similarity=0.314 Sum_probs=60.7
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 146 ~~~kI~VIG~-G~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
..+||+|+|+ |..|..+...|..+ +++|+.+..+.++-+. +......+. .+.. ..+. ..+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~----i~~~~~~l~-~~~~---------~~~~-~~~~~~ 101 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQS----FGSVFPHLI-TQDL---------PNLV-AVKDAD 101 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCC----chhhCcccc-Cccc---------ccee-cCCHHH
Confidence 4579999999 99999999999988 6799988775443211 000000000 0000 0000 112233
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
++++|+||.|+|.. .-.++...+ ..++.+++++|..-.
T Consensus 102 ~~~~DvVf~Alp~~--~s~~i~~~~----~~g~~VIDlSs~fRl 139 (381)
T PLN02968 102 FSDVDAVFCCLPHG--TTQEIIKAL----PKDLKIVDLSADFRL 139 (381)
T ss_pred hcCCCEEEEcCCHH--HHHHHHHHH----hCCCEEEEcCchhcc
Confidence 68899999999875 333444443 357888899886544
No 439
>PRK14852 hypothetical protein; Provisional
Probab=93.65 E-value=0.082 Score=60.50 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||+|||+|-.|+.++..|+..|+ +++++|-|.
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 589999999999999999999998 788888764
No 440
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.64 E-value=0.062 Score=54.61 Aligned_cols=33 Identities=33% Similarity=0.375 Sum_probs=29.3
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 799999999999999999999999999999765
No 441
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.64 E-value=0.17 Score=52.02 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=58.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCccc
Q 009963 148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES 223 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 223 (521)
+||+|||+ |.+|..+...|.+. ++++. +++.+...-+. +...+ +.+.. . ..+... .+.+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~----~~~~~------~~l~~-----~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP----VSEVH------PHLRG-----L-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC----hHHhC------ccccc-----c-CCceeecCCHHH
Confidence 48999999 99999999999877 66777 55655432111 11000 10000 0 000111 12233
Q ss_pred c-cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcHH
Q 009963 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (521)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i~ 268 (521)
+ .++|+||.|+|.... .++..++. ..++.+++++|...++
T Consensus 65 ~~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 65 IAEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hhcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhhcC
Confidence 3 589999999997633 34444432 4578888998876443
No 442
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.56 E-value=0.39 Score=48.95 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=48.2
Q ss_pred ceEEEEEeCChhh-HHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009963 147 VKKVAILGGGLMG-SGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (521)
Q Consensus 147 ~~kI~VIG~G~mG-~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (521)
..||||||+|.++ ...+..+...+ .-|.++|+++++++...+. .|. . ...++++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~-~-----------~~~~~~~ 60 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGI-A-----------KAYTDLE 60 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCC-C-----------cccCCHH
Confidence 5799999998554 55777777765 3577889999987664321 111 0 1344554
Q ss_pred c-c--cCCCEEEEecccchhh
Q 009963 223 S-F--KDVDMVIEAIIENVSL 240 (521)
Q Consensus 223 ~-~--~~aDlVIeav~e~~~~ 240 (521)
+ + .+.|+|+.|+|.+...
T Consensus 61 ~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 61 ELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHhcCCCCCEEEEcCCChhhH
Confidence 4 3 3479999999988764
No 443
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.56 E-value=0.7 Score=49.50 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=31.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+||+|+|.|..|.++|..|.+.|++|+++|.++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 5899999999999999999999999999998753
No 444
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.55 E-value=0.21 Score=49.08 Aligned_cols=47 Identities=28% Similarity=0.308 Sum_probs=40.8
Q ss_pred cceEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH
Q 009963 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA 192 (521)
Q Consensus 146 ~~~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~ 192 (521)
..+++.|-|+ +-+|..+|..|+++|++|+++.|+++++++..+++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 4567888898 8999999999999999999999999999987665543
No 445
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.47 E-value=2 Score=42.94 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=36.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 187 (521)
..++|.|+|..|.+.++....+|. .++.+|+|+++.+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak 234 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK 234 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence 579999999999999999888886 8999999999988865
No 446
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.45 E-value=0.079 Score=54.85 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=30.2
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 58999999999999999999999999999875
No 447
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.45 E-value=0.075 Score=55.52 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=32.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.+|.|||+|..|...|..|+++|++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 5899999999999999999999999999999865
No 448
>PRK06753 hypothetical protein; Provisional
Probab=93.41 E-value=0.079 Score=54.86 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4799999999999999999999999999998875
No 449
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.39 E-value=0.33 Score=45.26 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=59.0
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc--cC----
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD---- 220 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 220 (521)
++|.|||-+ ..|..+|..|.+.|..|+++|.+--.+-. +.+.+ +-+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence 689999985 56999999999999999999876532210 00000 00001 11
Q ss_pred c-ccccCCCEEEEecccchh-hHHHHHHHHHhhCCCCceEEecCCcCc
Q 009963 221 Y-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTID 266 (521)
Q Consensus 221 ~-~~~~~aDlVIeav~e~~~-~k~~v~~~l~~~~~~~~il~sntS~l~ 266 (521)
+ +.+++||+||.|++-..- ++.+ .+++++++++......
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~d-------~ik~GavVIDVGi~~d 160 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPTE-------LLKDGAICINFASIKN 160 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCHH-------HcCCCcEEEEcCCCcC
Confidence 2 347899999999975543 4444 4679999987766543
No 450
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.39 E-value=0.083 Score=54.78 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.|.|||+|.+|.++|..|++.|++|+++|...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 48999999999999999999999999999853
No 451
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.30 E-value=0.21 Score=49.50 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=52.7
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-|. .|..+|..|.+.|..|+++......+. +.+++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 6899999987 899999999999999999875422111 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.|+.-..-++. ..+++++++++..
T Consensus 203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence 9999999943222222 4678999987654
No 452
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.28 E-value=0.3 Score=49.34 Aligned_cols=97 Identities=24% Similarity=0.338 Sum_probs=58.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (521)
.+|||+|+ |..|.-+...|....++ +.++-....+=++. .+.+.- ...-...+.+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~-----------~~f~~~-------~~~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY-----------IEFGGK-------SIGVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc-----------ccccCc-------cccCccccccccc
Confidence 58999988 99999999999987553 33333322221110 000000 0000111234456
Q ss_pred ccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
++++|+|+.|.+.+.. +++..++. ..+++++||+|....
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm 102 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRM 102 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCccccc
Confidence 7899999999987644 45555443 457999999997644
No 453
>PRK07832 short chain dehydrogenase; Provisional
Probab=93.26 E-value=0.24 Score=48.82 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.2
Q ss_pred EEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 149 kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~ 40 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQT 40 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 6788876 8999999999999999999999998776554
No 454
>PRK06847 hypothetical protein; Provisional
Probab=93.24 E-value=0.092 Score=54.38 Aligned_cols=35 Identities=43% Similarity=0.545 Sum_probs=32.4
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.++|.|||+|.-|...|..|++.|++|+++|++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 56899999999999999999999999999998764
No 455
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.24 E-value=0.41 Score=50.67 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=59.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC---C----CcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009963 148 KKVAILGG-GLMGSGIATALILS---N----YPVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~---G----~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (521)
-+|.|-|+ |.+|-++...+++. | +.+.|+|+ +.+.++.-.-.+.+..- ..+..+..
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~--------------pll~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF--------------PLLRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH--------------hhcCCcEE
Confidence 47999988 88888888888764 4 25788999 56665443322222110 11122222
Q ss_pred -ccCcccccCCCEEEEecc--c------------chhhHHHHHHHHHhhCCC-CceEEecC
Q 009963 218 -VLDYESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPP-HCILASNT 262 (521)
Q Consensus 218 -~~~~~~~~~aDlVIeav~--e------------~~~~k~~v~~~l~~~~~~-~~il~snt 262 (521)
+.+++++++||+||.+.- . +..+-+.+...|.++.++ ..|++..|
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 456789999999998752 1 122333444556776662 44554433
No 456
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.24 E-value=0.21 Score=49.56 Aligned_cols=73 Identities=21% Similarity=0.182 Sum_probs=53.2
Q ss_pred eEEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~-mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+. .|..+|..|.+.|..|++++.....+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 6899999987 899999999999999999884322111 23578
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
||+||.|+.-..-++. ..+++++++++..++
T Consensus 208 ADIvv~AvG~p~~i~~-------~~vk~gavVIDvGin 238 (287)
T PRK14176 208 ADILVVATGVKHLIKA-------DMVKEGAVIFDVGIT 238 (287)
T ss_pred CCEEEEccCCccccCH-------HHcCCCcEEEEeccc
Confidence 9999998743322222 257899998876653
No 457
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.22 E-value=0.16 Score=51.75 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=33.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILS-N-YPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~-G-~~V~l~d~~~~~~~~~ 186 (521)
++|.|+|+ |.||+.++..|+.+ | .++++++++++++...
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L 197 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL 197 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence 58999999 89999999999854 5 5899999998876653
No 458
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.21 E-value=0.081 Score=59.47 Aligned_cols=33 Identities=39% Similarity=0.689 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999874
No 459
>PRK07236 hypothetical protein; Provisional
Probab=93.17 E-value=0.11 Score=54.24 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=32.6
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
..+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999999864
No 460
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.06 E-value=0.22 Score=49.96 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=35.1
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 99999999999999999999999988776543
No 461
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.05 E-value=0.21 Score=48.92 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=34.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
+.+.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAE 49 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 45777777 78999999999999999999999998776544
No 462
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.03 E-value=0.11 Score=53.97 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=32.3
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
..+|+|||+|.+|.+.|..|++.|.+|+++|.+.-
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 46899999999999999999999999999998764
No 463
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.02 E-value=0.45 Score=47.43 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=53.3
Q ss_pred eEEEEEeCChhhHHHHHHHHh-CCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009963 148 KKVAILGGGLMGSGIATALIL-SNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~-~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (521)
.||+|||+|.||...+..+.+ .++++ .++|+++++...... .+.|.- ....+++. +
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~Gi~------------~~~~~~e~ll 60 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELGVK------------TSAEGVDGLL 60 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCCCC------------EEECCHHHHh
Confidence 389999999999988776664 45665 467888875321110 112211 11223333 2
Q ss_pred --cCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc
Q 009963 225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (521)
Q Consensus 225 --~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~ 264 (521)
.+.|+|+.|.|..... +.. ...+..+..+.++++.
T Consensus 61 ~~~dIDaV~iaTp~~~H~--e~a---~~al~aGk~VIdekPa 97 (285)
T TIGR03215 61 ANPDIDIVFDATSAKAHA--RHA---RLLAELGKIVIDLTPA 97 (285)
T ss_pred cCCCCCEEEECCCcHHHH--HHH---HHHHHcCCEEEECCcc
Confidence 4689999999977542 222 2233456666666643
No 464
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.94 E-value=0.51 Score=51.42 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=35.4
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
+.|.|.|+ |.+|..++..|++.|++|++++++.+.++....
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 46888887 999999999999999999999999988765443
No 465
>PRK06194 hypothetical protein; Provisional
Probab=92.93 E-value=0.21 Score=49.47 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |.+|..++..|++.|++|+++|++.+.++...
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV 47 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence 57888876 89999999999999999999999987766543
No 466
>PRK06196 oxidoreductase; Provisional
Probab=92.89 E-value=0.26 Score=49.82 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=35.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 188 (521)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++....
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~ 68 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALA 68 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56888887 889999999999999999999999887765443
No 467
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.87 E-value=0.2 Score=48.84 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=34.0
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~ 185 (521)
++|.|+|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~ 46 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKA 46 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 57899988 999999999999999999999999876554
No 468
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=92.74 E-value=0.27 Score=49.24 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=72.3
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
+++||+|.|.+|+..|.++-.-|..|+.||.- +.....+ .| +...+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~g-------------vq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------FG-------------VQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------cc-------------ceeeeHHHHHhh
Confidence 68999999999999999998889999999864 3322211 12 111222245788
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCc---CcHHHHHHhhcCCCceeec
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYSKDRIVGA 283 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~---l~i~~ia~~~~~~~r~ig~ 283 (521)
||+|-.=+|-.++.++-+-.+....|+++.-++ |+|- ++...+-..+. ...+-|.
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al~-sG~vaGa 258 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRALD-SGQVAGA 258 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHHh-cCcccce
Confidence 999999888888776666566667788887664 5553 45555655553 2344444
No 469
>PRK07588 hypothetical protein; Provisional
Probab=92.72 E-value=0.11 Score=54.27 Aligned_cols=34 Identities=32% Similarity=0.272 Sum_probs=31.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|..|.+.|..|++.|++|+++|+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999998764
No 470
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.69 E-value=0.11 Score=54.25 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=30.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~--G~~V~l~d~~~ 180 (521)
..|.|||+|.+|.++|..|++. |++|+++|++.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3699999999999999999998 99999999875
No 471
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.62 E-value=0.13 Score=53.09 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=29.8
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
.|.|||+|.+|.+.|..|++.|++|+++|.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 48999999999999999999999999999864
No 472
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=92.58 E-value=0.12 Score=54.51 Aligned_cols=33 Identities=42% Similarity=0.627 Sum_probs=30.9
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+|.|||+|..|...|..|++.|++|++++..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999997665
No 473
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=92.57 E-value=0.13 Score=54.03 Aligned_cols=35 Identities=37% Similarity=0.475 Sum_probs=31.5
Q ss_pred ceEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 147 ~~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+++|.|||+|..|...|..|++.|++|+++|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 46899999999999999999999999999996443
No 474
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.49 E-value=0.11 Score=54.45 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=32.0
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
+||.|||+|.-|...|..|+++|++|.++|+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998864
No 475
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.45 E-value=1.5 Score=46.79 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=30.7
Q ss_pred EEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
||.|||.|..|.+.|..|.+.|++|.++|.++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998754
No 476
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.40 E-value=0.3 Score=48.08 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=34.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET 45 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 47888887 8999999999999999999999999887654
No 477
>PRK07538 hypothetical protein; Provisional
Probab=92.38 E-value=0.13 Score=54.25 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=31.8
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
++|.|||+|.-|...|..|+++|++|+++|++++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999999864
No 478
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=92.31 E-value=1.4 Score=46.96 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=30.0
Q ss_pred EEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCHH
Q 009963 149 KVAILGGGLMGSG-IATALILSNYPVILKEVNEK 181 (521)
Q Consensus 149 kI~VIG~G~mG~~-iA~~la~~G~~V~l~d~~~~ 181 (521)
+|.|||.|..|.+ +|..|.+.|++|+++|.+..
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~ 34 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN 34 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc
Confidence 4789999999998 99999999999999998764
No 479
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=92.26 E-value=1.4 Score=41.99 Aligned_cols=98 Identities=19% Similarity=0.120 Sum_probs=58.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HH---HHHh-hhccccc-ccCc
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QE---KFEK-TISLLTG-VLDY 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~---~~~~-~~~~i~~-~~~~ 221 (521)
.+|-++|+|. +.-|..|+.+|++|+.+|.++.+++.+.+. .+... .. .... .-.+++. ..|+
T Consensus 36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFAE----------NGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHHH----------cCCCcceeccccceeeecCceEEEEccC
Confidence 4899999997 356777899999999999999999864321 11100 00 0000 0011211 1122
Q ss_pred cc-----ccCCCEEEEec---ccchhhHHHHHHHHHhhCCCCce
Q 009963 222 ES-----FKDVDMVIEAI---IENVSLKQQIFADLEKYCPPHCI 257 (521)
Q Consensus 222 ~~-----~~~aDlVIeav---~e~~~~k~~v~~~l~~~~~~~~i 257 (521)
.. ...-|.|+++. .-.++.....++.+.+.++|+..
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 11 22358888753 12345567788999999999863
No 480
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=92.23 E-value=0.32 Score=47.47 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=34.7
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 187 (521)
++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 36888887 78999999999999999999999988776544
No 481
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.20 E-value=0.18 Score=51.66 Aligned_cols=93 Identities=22% Similarity=0.268 Sum_probs=56.8
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcc
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPV---ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYE 222 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V---~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 222 (521)
+||+|||+ |..|..+...|.++||++ ....++.+.-+... + .| ..+... .+..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~------~-----~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS------F-----KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee------e-----CC-----------ceeEEeeCCHH
Confidence 58999998 999999999999988864 55544433211100 0 01 011111 1113
Q ss_pred cccCCCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCCcCcH
Q 009963 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (521)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS~l~i 267 (521)
.+.++|+||.|+|... -+++..++ +..++++++++|....
T Consensus 60 ~~~~vDvVf~A~g~g~--s~~~~~~~---~~~G~~VIDlS~~~R~ 99 (334)
T PRK14874 60 DFSGVDIALFSAGGSV--SKKYAPKA---AAAGAVVIDNSSAFRM 99 (334)
T ss_pred HHcCCCEEEECCChHH--HHHHHHHH---HhCCCEEEECCchhhc
Confidence 4578999999998653 34444443 3457788888876543
No 482
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=92.20 E-value=0.11 Score=54.55 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=30.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||.|||+|..|+.+|..|+..|+ +++++|-+.
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 479999999999999999999998 799999764
No 483
>PRK14851 hypothetical protein; Provisional
Probab=92.17 E-value=0.18 Score=56.40 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=29.7
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.||+|||+|-.|+.++..|++.|+ +++++|-|.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 489999999999999999999998 788888763
No 484
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.15 E-value=1.3 Score=43.88 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=33.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~ 186 (521)
.+|.|+|+|.+|...++.+...|.. |++.|+++++++.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 4789999999999999888888987 88889998887654
No 485
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=92.15 E-value=0.15 Score=55.90 Aligned_cols=33 Identities=39% Similarity=0.617 Sum_probs=30.6
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|.+|.++|..|++.|++|+++|.+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 469999999999999999999999999999863
No 486
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.08 E-value=0.34 Score=47.99 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=51.6
Q ss_pred eEEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~G-~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||-+ ..|..+|..|.++|..|+++......+. +.+++
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~-------------------------------------~~~~~ 200 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLK-------------------------------------AHTKK 200 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 589999997 8899999999999999998753221111 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~snt 262 (521)
||+||.|+.-..-++. ..+++++++++..
T Consensus 201 ADIvV~AvGkp~~i~~-------~~vk~gavvIDvG 229 (281)
T PRK14183 201 ADIVIVGVGKPNLITE-------DMVKEGAIVIDIG 229 (281)
T ss_pred CCEEEEecCcccccCH-------HHcCCCcEEEEee
Confidence 9999999954322322 3578899987654
No 487
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.06 E-value=0.24 Score=48.21 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=33.8
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~ 42 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAF 42 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46888887 8999999999999999999999998776543
No 488
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=92.01 E-value=0.15 Score=53.29 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
..|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 479999999999999999999999999999875
No 489
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.01 E-value=1.6 Score=43.63 Aligned_cols=33 Identities=36% Similarity=0.470 Sum_probs=30.4
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009963 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~-~V~l~d~~~ 180 (521)
.+|.|+|+|-+|+.||..|+.+|. +++++|-+.
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 589999999999999999999998 799999764
No 490
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.00 E-value=0.84 Score=38.05 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=61.5
Q ss_pred eEEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc---
Q 009963 148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY--- 221 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 221 (521)
.+|.-||+|+ | .++..+++ .|.+|+.+|.+++.++.+.+++.. .+. ..++.+. .+.
T Consensus 3 ~~vLDlGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~---------~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT-G-RLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EGL---------SDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT-S-HHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TTT---------TTTEEEEESCCHGG
T ss_pred CEEEEEcCcC-C-HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cCC---------CCCeEEEECccccC
Confidence 4788999987 3 33344445 899999999999999988765411 110 1222221 122
Q ss_pred -ccccCCCEEEEec-----ccchhhHHHHHHHHHhhCCCCceEEec
Q 009963 222 -ESFKDVDMVIEAI-----IENVSLKQQIFADLEKYCPPHCILASN 261 (521)
Q Consensus 222 -~~~~~aDlVIeav-----~e~~~~k~~v~~~l~~~~~~~~il~sn 261 (521)
+.....|+|+..- .-..+..+.+++.+.+.++|+.+++.+
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3345689998766 222245678889999999888776543
No 491
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.97 E-value=0.34 Score=47.77 Aligned_cols=39 Identities=31% Similarity=0.428 Sum_probs=33.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
+++.|.|+ |.+|..++..|++.|++|++.+++.+.++..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAV 50 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46778876 8999999999999999999999998766543
No 492
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=91.90 E-value=0.17 Score=52.97 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
.+|.|||+|..|...|..|+++|++|+++|+.++
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999999999999874
No 493
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.87 E-value=0.41 Score=46.14 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=34.3
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 186 (521)
++|.|.|+ |.+|..++..|+++|++|++.+++++..+..
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL 41 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 57888886 9999999999999999999999998876553
No 494
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.83 E-value=0.27 Score=47.98 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.9
Q ss_pred eEEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCH
Q 009963 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE 180 (521)
Q Consensus 148 ~kI~VIG~G---~mG~~iA~~la~~G~~V~l~d~~~ 180 (521)
+.+.|.|++ -+|.++|..|++.|++|++.+++.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 467777885 799999999999999999999884
No 495
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=91.83 E-value=0.14 Score=52.97 Aligned_cols=32 Identities=34% Similarity=0.573 Sum_probs=30.5
Q ss_pred EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009963 150 VAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (521)
Q Consensus 150 I~VIG~G~mG~~iA~~la~~G~~V~l~d~~~~ 181 (521)
|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 78999999999999999999999999999975
No 496
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=91.82 E-value=0.79 Score=45.34 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=71.2
Q ss_pred eEEEEEeCChhhHHHHHHHHhC----CC-------cEEEEeCCH----H--HHHHHHHHHHHHHHHHHHcCCCCHHHHHh
Q 009963 148 KKVAILGGGLMGSGIATALILS----NY-------PVILKEVNE----K--FLEAGIGRVRANLQSRVKKGKMTQEKFEK 210 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~----G~-------~V~l~d~~~----~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~ 210 (521)
.||.|+|+|.-|.+||..+... |. +++++|++- + .+... ...| .+...
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~----~~~~---a~~~~-------- 90 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPF----KKPF---ARKDE-------- 90 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHH----HHHH---HhhcC--------
Confidence 5899999999999999988776 87 788989862 1 11111 1111 11100
Q ss_pred hhcccccccCc-cccc--CCCEEEEecccchhhHHHHHHHHHhhCCCCceEE-ecCCc---CcHHHHHHhhcCCCceeec
Q 009963 211 TISLLTGVLDY-ESFK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA-SNTST---IDLNLIGERTYSKDRIVGA 283 (521)
Q Consensus 211 ~~~~i~~~~~~-~~~~--~aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~-sntS~---l~i~~ia~~~~~~~r~ig~ 283 (521)
. ....++ +.++ ++|++|=+--..-.+.+++++...+++..-.|++ ||-.. ...++..+...-..-|...
T Consensus 91 ---~-~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATG 166 (279)
T cd05312 91 ---E-KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASG 166 (279)
T ss_pred ---c-ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeC
Confidence 0 011233 4466 7888886542223467888888888776666664 66433 4455555543212123333
Q ss_pred ccccccC
Q 009963 284 HFFSPAH 290 (521)
Q Consensus 284 hf~~P~~ 290 (521)
-||.|+.
T Consensus 167 sPf~pv~ 173 (279)
T cd05312 167 SPFPPVE 173 (279)
T ss_pred CCCCCee
Confidence 5777664
No 497
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=91.81 E-value=0.19 Score=50.64 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=31.6
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF 182 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~ 182 (521)
++|.|+|+ |.+|..++..|++.|++|++++++++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence 37899986 999999999999999999999998764
No 498
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=91.78 E-value=0.18 Score=52.75 Aligned_cols=32 Identities=38% Similarity=0.416 Sum_probs=30.9
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009963 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~V~l~d~~ 179 (521)
..|.|||+|..|...|..|+++|++|+++|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 57999999999999999999999999999998
No 499
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.77 E-value=0.55 Score=46.67 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=52.5
Q ss_pred eEEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009963 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (521)
Q Consensus 148 ~kI~VIG~-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (521)
++|.|||- ...|..+|..|.+.|..|++++.....+. +.+++
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~-------------------------------------~~~~~ 201 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLA-------------------------------------ELTKQ 201 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHH-------------------------------------HHHHh
Confidence 68999998 67799999999999999999864332211 23678
Q ss_pred CCEEEEecccchhhHHHHHHHHHhhCCCCceEEecCC
Q 009963 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (521)
Q Consensus 227 aDlVIeav~e~~~~k~~v~~~l~~~~~~~~il~sntS 263 (521)
||+||.|+.-..-++. +.+++++++++...
T Consensus 202 ADIvI~AvG~p~~i~~-------~~ik~gavVIDvGi 231 (284)
T PRK14190 202 ADILIVAVGKPKLITA-------DMVKEGAVVIDVGV 231 (284)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCCEEEEeec
Confidence 9999999954432322 34689999887543
No 500
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.77 E-value=0.91 Score=45.73 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=31.1
Q ss_pred eEEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHH
Q 009963 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAG 186 (521)
Q Consensus 148 ~kI~VIG~G~mG~~iA~~la~~G~~-V~l~d~~~~~~~~~ 186 (521)
.+|.|+|+|.+|...++.+...|.+ |.+.|.++++++.+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 3689999999999888877778986 66778888776543
Done!