BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009967
         (521 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/500 (69%), Positives = 414/500 (82%), Gaps = 2/500 (0%)

Query: 21  HSLAPNYLIETQK--ASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT 78
           H+LA N L E+Q+      KL T  +  D V   S S       ++FDEVP+ +VVSAT 
Sbjct: 303 HALACNQLKESQRIHGRAIKLGTTILEPDIVCSYSASKALWDACKLFDEVPNWDVVSATA 362

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
            IG FA+ HH+EEAIY FSRML LNI+P++F+FG+VIPSSTAL+DLN G+QLHA A K+G
Sbjct: 363 TIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMG 422

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+SNVFVGSA++D Y KL+SI EA + FEDTH PNVVSYTT+I G LK+ERF+DAL LF+
Sbjct: 423 LESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFR 482

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +MP RNVVSWNAMI GYSQ G NEEAVNLF+ MLREG +PN  T PCAI A ANIAALGM
Sbjct: 483 KMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGM 542

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+SFH  AVKFLGK DVF+GNSL+SFYAKCGSME+SLLVF+ L ++NIV+WNA+ICGYA 
Sbjct: 543 GRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYAN 602

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +GRG EAI FFE+M+  G+RPN VTLLGLL ACNH+GLV+KGYSYF++A++E+PG+L PE
Sbjct: 603 HGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPE 662

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           H+ACMVDLLSRSGRFKEA++FL++LPF PGIGFWKALLGGC+IHSN+ELGE AAR+ILAL
Sbjct: 663 HHACMVDLLSRSGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILAL 722

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
           DPEDVSSYVMLSNA S AG+W +VS IR+EM+EK M  VPG SWIEI+SKVH+FVTGDRN
Sbjct: 723 DPEDVSSYVMLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWIEIRSKVHIFVTGDRN 782

Query: 499 HHMNDEIYAVLRSCTEQIRE 518
           H  +DEIY VL  C + +RE
Sbjct: 783 HDQHDEIYQVLGFCIQHLRE 802


>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Vitis vinifera]
          Length = 538

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/500 (69%), Positives = 414/500 (82%), Gaps = 2/500 (0%)

Query: 21  HSLAPNYLIETQK--ASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT 78
           H+LA N L E+Q+      KL T  +  D V   S S       ++FDEVP+ +VVSAT 
Sbjct: 22  HALACNQLKESQRIHGRAIKLGTTILEPDIVCSYSASKALWDACKLFDEVPNWDVVSATA 81

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
            IG FA+ HH+EEAIY FSRML LNI+P++F+FG+VIPSSTAL+DLN G+QLHA A K+G
Sbjct: 82  TIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMG 141

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+SNVFVGSA++D Y KL+SI EA + FEDTH PNVVSYTT+I G LK+ERF+DAL LF+
Sbjct: 142 LESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFR 201

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +MP RNVVSWNAMI GYSQ G NEEAVNLF+ MLREG +PN  T PCAI A ANIAALGM
Sbjct: 202 KMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGM 261

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+SFH  AVKFLGK DVF+GNSL+SFYAKCGSME+SLLVF+ L ++NIV+WNA+ICGYA 
Sbjct: 262 GRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYAN 321

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +GRG EAI FFE+M+  G+RPN VTLLGLL ACNH+GLV+KGYSYF++A++E+PG+L PE
Sbjct: 322 HGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPE 381

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           H+ACMVDLLSRSGRFKEA++FL++LPF PGIGFWKALLGGC+IHSN+ELGE AAR+ILAL
Sbjct: 382 HHACMVDLLSRSGRFKEAEKFLHELPFVPGIGFWKALLGGCRIHSNMELGELAARKILAL 441

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
           DPEDVSSYVMLSNA S AG+W +VS IR+EM+EK M  VPG SWIEI+SKVH+FVTGDRN
Sbjct: 442 DPEDVSSYVMLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWIEIRSKVHIFVTGDRN 501

Query: 499 HHMNDEIYAVLRSCTEQIRE 518
           H  +DEIY VL  C + +RE
Sbjct: 502 HDQHDEIYQVLGFCIQHLRE 521


>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
          Length = 795

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/525 (66%), Positives = 421/525 (80%), Gaps = 14/525 (2%)

Query: 8   CRSSLSLNKLSKLHSLAP------------NYLIETQKASVQ--KLETPAIRTDSVSCGS 53
           C SS   +    LHSLA             N L E+Q+A  +  KL T  +  D V   S
Sbjct: 254 CPSSDGTDAYKTLHSLAKFKPQRETQALACNQLKESQRAHGRAVKLGTTILEPDIVCSYS 313

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
            S +     ++FDEVP+ +VVSAT  IG FA+ HH+EEAIY FSRML LNI+P++F+FG+
Sbjct: 314 ASKELWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPNQFSFGT 373

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VIPS+TAL+DLN G+QLHA A K+GL+SNVFVGSA++D Y KL+SI EA + FEDTH PN
Sbjct: 374 VIPSATALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFEDTHEPN 433

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVSYTT+I G LK+ERF+DAL LF+ MP RNVVSWNAMI GYSQ G NEEAVNLF+ MLR
Sbjct: 434 VVSYTTLIRGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAVNLFVVMLR 493

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG +PN  T PCAI A ANIAALGMG+SFH  AVKFLGK DVF+GNSL+SFYAKCGSME+
Sbjct: 494 EGXLPNERTFPCAISAVANIAALGMGRSFHGSAVKFLGKFDVFIGNSLVSFYAKCGSMEE 553

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           SLLVF+ L ++NIV+WNA+ICGYA +GRG EAI FFE+M+  G+RPN VTLLGLL ACNH
Sbjct: 554 SLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSVTLLGLLLACNH 613

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           +GLV+KGYSYF++A++E+PG+L PEH+ACMVDLLSRSGRFKEA++FL++LPF PGIGFWK
Sbjct: 614 SGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHELPFVPGIGFWK 673

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALLGGC+IHSN+ELGE AAR+ILALDPEDVSSYVMLSNA S AG+W +VS IR+EM+EK 
Sbjct: 674 ALLGGCRIHSNMELGELAARKILALDPEDVSSYVMLSNAHSAAGRWQSVSMIRKEMREKR 733

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           M  VPG SWIEI+SKVH+FVTGDRNH  +DEIY VL  C + +RE
Sbjct: 734 MKGVPGSSWIEIRSKVHIFVTGDRNHDQHDEIYQVLGFCIQHLRE 778


>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/502 (67%), Positives = 404/502 (80%), Gaps = 8/502 (1%)

Query: 19  KLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT 78
           K+HSLA  +          K E   +  D   C S+S+    V ++FDE+P+L+V+S TT
Sbjct: 18  KIHSLASGH--------AHKAECSPVPVDIKVCRSKSNIRMDVDELFDEMPELDVLSVTT 69

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +IGRFA+QH YEEA+ LFSRMLLLNI+P+EFTF +VI SST L+++ LGKQLHA   K+G
Sbjct: 70  LIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLKNIYLGKQLHARTMKMG 129

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L + VFVGSA+LD Y KL S EEA   FED   PNVVSYTT+I G LK+ + +DAL+LFQ
Sbjct: 130 LNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQ 189

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           EMP RNVVSWNAM+GG+SQ G NEEAV+LFIEMLREG +PN ST PCAI +AAN+A+LGM
Sbjct: 190 EMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASLGM 249

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GKSFHACAVK L   DVFV NSL+SFYAKCGSMEDSLLVF++L +RN V+WNAVICG+AQ
Sbjct: 250 GKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQ 309

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           NGRGE+A+ FFERMR  G+RPN VTLLGLL ACNH GLVEKGY YF+Q + E+PG+LKPE
Sbjct: 310 NGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQEEPGILKPE 369

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           HYACMVDLLSR GR KEA +FL+DLPFDPG GFWKALLGGC IHSN EL + AA++ILAL
Sbjct: 370 HYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCHIHSNAELSDLAAQKILAL 429

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
           DPEDVSSYVMLSNA S AG+W  VS IRREMKEKG+ R+PGCSWIE++SK+HVF+  D+N
Sbjct: 430 DPEDVSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLKRIPGCSWIEVRSKIHVFLNSDKN 489

Query: 499 HHMNDEIYAVLRSCTEQIREFE 520
           HH  +EIY+ L+ C EQ+RE E
Sbjct: 490 HHQKEEIYSFLKFCVEQLREIE 511


>gi|356561520|ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Glycine max]
          Length = 506

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/493 (66%), Positives = 395/493 (80%)

Query: 28  LIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH 87
           + +T  A+  K E     +D      +S  F    Q+F+E+ DL V SATT+I  F K+H
Sbjct: 1   MTKTHHANATKHEASVAHSDINPYNLDSTTFHVACQLFEEMSDLTVASATTMIQGFVKRH 60

Query: 88  HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147
            +E+AIYLFS+ML   IRP+EFTFG++I SS AL ++ +GKQLHA A K+GL  +VFVGS
Sbjct: 61  CHEDAIYLFSKMLASKIRPNEFTFGTLINSSAALGNVVVGKQLHACAMKIGLSCHVFVGS 120

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
           ++LDLY K S+IE+A + F DT +PNVVSYTT+ICG LKR RFEDAL++F EMP RNVVS
Sbjct: 121 SLLDLYFKQSTIEDAQKAFGDTQHPNVVSYTTLICGYLKRGRFEDALRVFHEMPERNVVS 180

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           WNAM+GG SQTG NEEAVN FI MLREG +PN ST PC I AAANIA+LG+GKSFHACA+
Sbjct: 181 WNAMVGGCSQTGHNEEAVNFFIGMLREGFIPNESTFPCVICAAANIASLGIGKSFHACAI 240

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           KFLGK+D FVGNSLISFYAKCGSMEDSLL+FDKL +RNIV+WNA+ICGYAQNGRG EAI 
Sbjct: 241 KFLGKVDQFVGNSLISFYAKCGSMEDSLLMFDKLFKRNIVSWNAMICGYAQNGRGAEAIS 300

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
           FFERM   G +PN VTLLGLLWACNH GLV++GYSYF++A+LE PG+LK EHYACMV+LL
Sbjct: 301 FFERMCSEGYKPNYVTLLGLLWACNHAGLVDEGYSYFNRARLESPGLLKSEHYACMVNLL 360

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447
           +RSGRF EA++FL  +PFDPG+GFWKALL GCQIHSN+ LGE AAR+IL LDP+DVSSYV
Sbjct: 361 ARSGRFAEAEDFLQSVPFDPGLGFWKALLAGCQIHSNMRLGELAARKILDLDPDDVSSYV 420

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           MLSNA S AGKW +V+ +R EMKEKGM R+PG SWIE++ +VH F+TGD+NH   DEIY 
Sbjct: 421 MLSNAHSAAGKWSDVATVRTEMKEKGMKRIPGSSWIEVRGEVHAFLTGDQNHDKKDEIYL 480

Query: 508 VLRSCTEQIREFE 520
           +L    E +RE E
Sbjct: 481 LLNFFFEHLRENE 493


>gi|449448675|ref|XP_004142091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Cucumis sativus]
          Length = 516

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/459 (71%), Positives = 394/459 (85%), Gaps = 1/459 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q++D++P LNVVSATT IGR A+QH +EEA+ LFS ML+LN+RP+EFTFG+VI S  AL 
Sbjct: 50  QLYDKMPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSPKALG 109

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D+++GKQLH  A K GL SNVFVGSA+LDLY+K+  IEEA R FED   PNVVSYT++I 
Sbjct: 110 DIHIGKQLHVCAIKTGLHSNVFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTSLIS 169

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G LK ER  DAL++F EMP RNVVSWN+MIGG+SQ G NE+AV+LFI+MLREG++P  ST
Sbjct: 170 GYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPTQST 229

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL- 301
            PCAI AAANIA++G+G+SFHACAVKF GKLDVFV NSLISFYAKCGSMEDSLLVF+KL 
Sbjct: 230 FPCAICAAANIASIGIGRSFHACAVKFFGKLDVFVSNSLISFYAKCGSMEDSLLVFNKLL 289

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ERN+V+WNAV+ G+AQNGRG+EAI+F++RM + G +PN VT L LLWACNH GLV++GY
Sbjct: 290 DERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGY 349

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           SYF+QA+L++P +LK EHYACMVDLLSRSG+FK A+EF++DLPFDPGIGFWKALLGGCQI
Sbjct: 350 SYFNQARLDNPNLLKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGGCQI 409

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           HSNVELGE AA+RILALDP DVSSYVM+SNA S AGKW +VS +RREMKEKG+ R+PGCS
Sbjct: 410 HSNVELGELAAQRILALDPGDVSSYVMMSNAHSAAGKWHSVSILRREMKEKGLKRIPGCS 469

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           WIEI+SKVHVFVTGD+NHH  DEIY+ L+   E ++E E
Sbjct: 470 WIEIRSKVHVFVTGDKNHHQKDEIYSALKFFVEHLKERE 508



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 139/301 (46%), Gaps = 33/301 (10%)

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           DA +L+ +MPH NVVS    IG  ++  ++EEA++LF  ML   L PN  T    I +  
Sbjct: 47  DARQLYDKMPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSPK 106

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME------------------- 292
            +  + +GK  H CA+K     +VFVG++L+  Y K G +E                   
Sbjct: 107 ALGDIHIGKQLHVCAIKTGLHSNVFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTS 166

Query: 293 ------------DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
                       D+L VFD++ ERN+V+WN++I G++Q G  E+A+  F  M   GI P 
Sbjct: 167 LISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPT 226

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
             T    + A  +   +  G S+ + A ++  G L       ++   ++ G  +++    
Sbjct: 227 QSTFPCAICAAANIASIGIGRSFHACA-VKFFGKLDVFVSNSLISFYAKCGSMEDSLLVF 285

Query: 401 YDLPFDPGIGFWKALLGG-CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
             L  +  +  W A+L G  Q     E  +F  R ILA    +  +++ L  A + AG  
Sbjct: 286 NKLLDERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLV 345

Query: 460 D 460
           D
Sbjct: 346 D 346



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 7/208 (3%)

Query: 28  LIETQKASVQKLETPAI--RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           +IE  + + + ++ P +   T  +S   + ++     +VFDE+P+ NVVS  ++IG F++
Sbjct: 145 VIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQ 204

Query: 86  QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFV 145
           + H E+A++LF  ML   I P++ TF   I ++  +  + +G+  HA A K   + +VFV
Sbjct: 205 KGHNEDAVHLFIDMLREGILPTQSTFPCAICAAANIASIGIGRSFHACAVKFFGKLDVFV 264

Query: 146 GSAILDLYIKLSSIEEATRVFEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEMP--- 201
            ++++  Y K  S+E++  VF    +  NVVS+  ++ G  +  R ++A+  +Q M    
Sbjct: 265 SNSLISFYAKCGSMEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAG 324

Query: 202 -HRNVVSWNAMIGGYSQTGRNEEAVNLF 228
              N V++ +++   +  G  +E  + F
Sbjct: 325 CKPNAVTFLSLLWACNHAGLVDEGYSYF 352


>gi|449523361|ref|XP_004168692.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Cucumis sativus]
          Length = 516

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/459 (71%), Positives = 395/459 (86%), Gaps = 1/459 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q++D++P LNVVSATT IGR A+QH +EEA+ LFS ML+LN+RP+EFTFG+VI S+ AL 
Sbjct: 50  QLYDKLPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSAKALG 109

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D+++GKQLH  A K GL SN+FVGSA+LDLY+K+  IEEA R FED   PNVVSYT++I 
Sbjct: 110 DIHIGKQLHVCAIKTGLHSNLFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTSLIS 169

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G LK ER  DAL++F EMP RNVVSWN+MIGG+SQ G NE+AV+LFI+MLREG++P  ST
Sbjct: 170 GYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPTQST 229

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL- 301
            PCAI AAANIA++G+G+SFHACAVKF GKLDVFV NSLISFYAKCGSMEDSLLVF+KL 
Sbjct: 230 FPCAICAAANIASIGIGRSFHACAVKFFGKLDVFVSNSLISFYAKCGSMEDSLLVFNKLL 289

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ERN+V+WNAV+ G+AQNGRG+EAI+F++RM + G +PN VT L LLWACNH GLV++GY
Sbjct: 290 DERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLVDEGY 349

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           SYF+QA+L++P +LK EHYACMVDLLSRSG+FK A+EF++DLPFDPGIGFWKALLGGCQI
Sbjct: 350 SYFNQARLDNPNLLKAEHYACMVDLLSRSGQFKRAEEFIHDLPFDPGIGFWKALLGGCQI 409

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           HSNVELGE AA+RILALDP DVSSYVM+SNA S AGKW +VS +RREMKEKG+ R+PGCS
Sbjct: 410 HSNVELGELAAQRILALDPGDVSSYVMMSNAHSAAGKWHSVSILRREMKEKGLKRIPGCS 469

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           WIEI+SKVHVFVTGD+NHH  DEIY+ L+   E ++E E
Sbjct: 470 WIEIRSKVHVFVTGDKNHHQKDEIYSALKFFVEHLKERE 508



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 140/301 (46%), Gaps = 33/301 (10%)

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           DA +L+ ++PH NVVS    IG  ++  ++EEA++LF  ML   L PN  T    I +A 
Sbjct: 47  DARQLYDKLPHLNVVSATTAIGRCARQHQHEEALSLFSAMLVLNLRPNEFTFGTVIQSAK 106

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME------------------- 292
            +  + +GK  H CA+K     ++FVG++L+  Y K G +E                   
Sbjct: 107 ALGDIHIGKQLHVCAIKTGLHSNLFVGSALLDLYVKVGVIEEAQRAFEDIKMPNVVSYTS 166

Query: 293 ------------DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
                       D+L VFD++ ERN+V+WN++I G++Q G  E+A+  F  M   GI P 
Sbjct: 167 LISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQKGHNEDAVHLFIDMLREGILPT 226

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
             T    + A  +   +  G S+ + A ++  G L       ++   ++ G  +++    
Sbjct: 227 QSTFPCAICAAANIASIGIGRSFHACA-VKFFGKLDVFVSNSLISFYAKCGSMEDSLLVF 285

Query: 401 YDLPFDPGIGFWKALLGG-CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
             L  +  +  W A+L G  Q     E  +F  R ILA    +  +++ L  A + AG  
Sbjct: 286 NKLLDERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAGCKPNAVTFLSLLWACNHAGLV 345

Query: 460 D 460
           D
Sbjct: 346 D 346



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 7/208 (3%)

Query: 28  LIETQKASVQKLETPAI--RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           +IE  + + + ++ P +   T  +S   + ++     +VFDE+P+ NVVS  ++IG F++
Sbjct: 145 VIEEAQRAFEDIKMPNVVSYTSLISGYLKIERIRDALRVFDEMPERNVVSWNSMIGGFSQ 204

Query: 86  QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFV 145
           + H E+A++LF  ML   I P++ TF   I ++  +  + +G+  HA A K   + +VFV
Sbjct: 205 KGHNEDAVHLFIDMLREGILPTQSTFPCAICAAANIASIGIGRSFHACAVKFFGKLDVFV 264

Query: 146 GSAILDLYIKLSSIEEATRVFEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEMP--- 201
            ++++  Y K  S+E++  VF    +  NVVS+  ++ G  +  R ++A+  +Q M    
Sbjct: 265 SNSLISFYAKCGSMEDSLLVFNKLLDERNVVSWNAVLSGFAQNGRGKEAIDFYQRMILAG 324

Query: 202 -HRNVVSWNAMIGGYSQTGRNEEAVNLF 228
              N V++ +++   +  G  +E  + F
Sbjct: 325 CKPNAVTFLSLLWACNHAGLVDEGYSYF 352


>gi|224088569|ref|XP_002308477.1| predicted protein [Populus trichocarpa]
 gi|222854453|gb|EEE92000.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/447 (69%), Positives = 373/447 (83%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD +PDL+VVSATTIIG+FA+ H Y EAI LFSRML LN+ P+EFTFG+VI SST+L 
Sbjct: 48  QVFDTIPDLDVVSATTIIGQFARLHQYREAIQLFSRMLFLNVTPNEFTFGTVIHSSTSLG 107

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DLNLG+Q  A A K+GL   VFVGSA+LD Y KL SI+EA R FED  +PN+VSYT +I 
Sbjct: 108 DLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGSIQEAQRAFEDIQHPNIVSYTALIH 167

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G LK+ RFE+A +LF++MP RN+V+WNAMIGG+SQ G+NEEAVNLF+EM+REGLVP   T
Sbjct: 168 GYLKKGRFEEAFELFKQMPERNIVTWNAMIGGFSQMGQNEEAVNLFVEMIREGLVPCQYT 227

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
            PCAIIAAANIAAL MG+SFHACA+K +G+  VFVGNSLISFYAKCGSMEDSL +F +L 
Sbjct: 228 FPCAIIAAANIAALEMGRSFHACAIKTMGEFSVFVGNSLISFYAKCGSMEDSLRLFYELP 287

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER IV+WNAVICG+AQNGRGE A++F+ERMR  G+RP+ VTLLGLLWACNH GLV+KGYS
Sbjct: 288 ERTIVSWNAVICGFAQNGRGENAVDFYERMRNTGLRPDSVTLLGLLWACNHAGLVDKGYS 347

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF++A+LE P +LKP+HYACMVDLLSR G FKEA+EFL DLPF+PG+GFWKALLGGC+IH
Sbjct: 348 YFNRARLEHPSLLKPKHYACMVDLLSRCGCFKEAQEFLRDLPFNPGVGFWKALLGGCKIH 407

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
           SN ELG  A R IL LDP+D SSY+MLSNA S AG+W + S IR+E+  +G+ R+P  SW
Sbjct: 408 SNTELGALAGRNILDLDPKDASSYIMLSNAHSAAGRWQDASVIRQEIHARGLKRIPASSW 467

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           IEIK+KVHVFV  D +HH  D+IY+VL
Sbjct: 468 IEIKTKVHVFVNCDMSHHQKDDIYSVL 494



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 33/258 (12%)

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           +AL++F  +P  +VVS   +IG +++  +  EA+ LF  ML   + PN  T    I ++ 
Sbjct: 45  NALQVFDTIPDLDVVSATTIIGQFARLHQYREAIQLFSRMLFLNVTPNEFTFGTVIHSST 104

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM-------------------- 291
           ++  L +G+ F ACA+K      VFVG++++  YAK GS+                    
Sbjct: 105 SLGDLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGSIQEAQRAFEDIQHPNIVSYTA 164

Query: 292 -----------EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
                      E++  +F ++ ERNIVTWNA+I G++Q G+ EEA+  F  M   G+ P 
Sbjct: 165 LIHGYLKKGRFEEAFELFKQMPERNIVTWNAMIGGFSQMGQNEEAVNLFVEMIREGLVPC 224

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
             T    + A  +   +E G S+ + A ++  G         ++   ++ G  +++    
Sbjct: 225 QYTFPCAIIAAANIAALEMGRSFHACA-IKTMGEFSVFVGNSLISFYAKCGSMEDSLRLF 283

Query: 401 YDLPFDPGIGFWKALLGG 418
           Y+LP +  I  W A++ G
Sbjct: 284 YELP-ERTIVSWNAVICG 300



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 97/200 (48%), Gaps = 32/200 (16%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +F    ++F ++P+ N+V+   +IG F++    EEA+ LF  M+   + P ++TF   I 
Sbjct: 174 RFEEAFELFKQMPERNIVTWNAMIGGFSQMGQNEEAVNLFVEMIREGLVPCQYTFPCAII 233

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           ++  +  L +G+  HA A K   + +VFVG++++  Y K  S+E++ R+F +     +VS
Sbjct: 234 AAANIAALEMGRSFHACAIKTMGEFSVFVGNSLISFYAKCGSMEDSLRLFYELPERTIVS 293

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +  +ICG                               ++Q GR E AV+ +  M   GL
Sbjct: 294 WNAVICG-------------------------------FAQNGRGENAVDFYERMRNTGL 322

Query: 237 VPNHSTLPCAIIAAANIAAL 256
            P+  TL   ++ A N A L
Sbjct: 323 RPDSVTL-LGLLWACNHAGL 341



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 31/177 (17%)

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           K + F+ +  I     C    ++L VFD + + ++V+   +I  +A+  +  EAI+ F R
Sbjct: 24  KSNHFLAHEYILKPEHCHFSRNALQVFDTIPDLDVVSATTIIGQFARLHQYREAIQLFSR 83

Query: 332 MRINGIRPNGVTLLGLLWACNHTG-----------LVEKGYSYF---------------- 364
           M    + PN  T   ++ +    G            ++ G +Y                 
Sbjct: 84  MLFLNVTPNEFTFGTVIHSSTSLGDLNLGRQFQACAMKMGLNYMVFVGSAVLDSYAKLGS 143

Query: 365 ---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              +Q   ED        Y  ++    + GRF+EA E    +P +  I  W A++GG
Sbjct: 144 IQEAQRAFEDIQHPNIVSYTALIHGYLKKGRFEEAFELFKQMP-ERNIVTWNAMIGG 199


>gi|334188141|ref|NP_199060.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170829|sp|Q9FIH2.1|PP414_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42450, mitochondrial; Flags: Precursor
 gi|9759481|dbj|BAB10486.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007429|gb|AED94812.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/474 (60%), Positives = 369/474 (77%), Gaps = 7/474 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +SD   + H+VFDE+P+L+V+SAT +IGRF K+  + EA   F R+L L IRP+EFTFG+
Sbjct: 39  DSDLIRNAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGT 98

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VI SST   D+ LGKQLH +A K+GL SNVFVGSA+L+ Y+KLS++ +A R F+DT +PN
Sbjct: 99  VIGSSTTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPN 158

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS T +I G LK+  FE+AL LF+ MP R+VV+WNA+IGG+SQTGRNEEAVN F++MLR
Sbjct: 159 VVSITNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLR 218

Query: 234 EGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK-LDVFVGNSLISFYAKCGSM 291
           EG+V PN ST PCAI A +NIA+ G GKS HACA+KFLGK  +VFV NSLISFY+KCG+M
Sbjct: 219 EGVVIPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNM 278

Query: 292 EDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLL 348
           EDSLL F+KL E  RNIV+WN++I GYA NGRGEEA+  FE+M +   +RPN VT+LG+L
Sbjct: 279 EDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVL 338

Query: 349 WACNHTGLVEKGYSYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           +ACNH GL+++GY YF++A    +DP +L+ EHYACMVD+LSRSGRFKEA+E +  +P D
Sbjct: 339 FACNHAGLIQEGYMYFNKAVNDYDDPNLLELEHYACMVDMLSRSGRFKEAEELIKSMPLD 398

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           PGIGFWKALLGGCQIHSN  L + AA +IL LDP DVSSYVMLSNA S    W NVS IR
Sbjct: 399 PGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAYSAMENWQNVSLIR 458

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           R+MKE G+ R  GCSWIE++ ++ VFV  D+N+ + DE+Y +L   ++ + E E
Sbjct: 459 RKMKETGLKRFTGCSWIEVRDQIRVFVNADKNNELKDEVYRMLALVSQHLEENE 512



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 4/159 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T+ +S   +  +F     +F  +P+ +VV+   +IG F++    EEA+  F  ML   + 
Sbjct: 163 TNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVV 222

Query: 106 -PSEFTFGSVIPSSTALEDLNLGKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEAT 163
            P+E TF   I + + +     GK +HA A K +G + NVFV ++++  Y K  ++E++ 
Sbjct: 223 IPNESTFPCAITAISNIASHGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMEDSL 282

Query: 164 RVFE--DTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
             F   +    N+VS+ +MI G     R E+A+ +F++M
Sbjct: 283 LAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKM 321



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 63/224 (28%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           +I    I  A +VF++    +V+S T                               A+I
Sbjct: 37  HIDSDLIRNAHKVFDEIPELDVISAT-------------------------------AVI 65

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
           G + +  R+ EA   F  +L  G+ PN  T    I ++     + +GK  H  A+K    
Sbjct: 66  GRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGSSTTSRDVKLGKQLHCYALKMGLA 125

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDK-------------------------------L 301
            +VFVG+++++ Y K  ++ D+   FD                                +
Sbjct: 126 SNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITNLISGYLKKHEFEEALSLFRAM 185

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIE-FFERMRINGIRPNGVTL 344
            ER++VTWNAVI G++Q GR EEA+  F + +R   + PN  T 
Sbjct: 186 PERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTF 229


>gi|242054925|ref|XP_002456608.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
 gi|241928583|gb|EES01728.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
          Length = 458

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 267/445 (60%), Positives = 343/445 (77%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  +VVSAT  IG   ++  + +A+ LFS++L   + P+EFTFG+V+ S+TAL     G
Sbjct: 1   MPHRDVVSATAAIGALTRRGRHRDALALFSQVLADGVAPNEFTFGTVLRSATALRAPRAG 60

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            QLHA A K+GL SNVFVGSA+LD Y K+ ++ EA  V +DT  PNVVSYT +I GLLK 
Sbjct: 61  VQLHACAAKLGLCSNVFVGSALLDHYAKMGAMREAHGVLDDTREPNVVSYTALIAGLLKN 120

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
             F++A +LF+ MP RNVVSWNAMIGG SQ G +EEAVNLF+EM REG+ PN ST PC +
Sbjct: 121 GMFDEADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAVNLFLEMCREGVTPNESTFPCVL 180

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            + AN  ALG+G+S HA A+KFLGKLDV++GNSL+SFYA+CGS+EDS+L F K+  +N+V
Sbjct: 181 TSVANAGALGVGRSVHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKMNRKNVV 240

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WNA+ICGYAQNG+GEEA++ +  MR  G++P+ VTLLGLL+ CNH GLV++GY+ F   
Sbjct: 241 SWNALICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGCNHAGLVDEGYALFKTT 300

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
           ++E PG+LKPEHYAC+VDLLSR+ RF  AK FL +LPF+PGIGFWKAL+GGCQIH N EL
Sbjct: 301 EMEQPGILKPEHYACVVDLLSRAKRFDNAKRFLEELPFEPGIGFWKALVGGCQIHWNREL 360

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            E  A+RI ALDP+D SSY++LSN  S +G W +VS IRRE+KEKG+ R+ GCSWIE+  
Sbjct: 361 AESVAKRIHALDPKDTSSYILLSNVYSASGSWQSVSMIRREIKEKGLKRITGCSWIEVHD 420

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSC 512
           KVHVF  GD  HH +DEIY++L  C
Sbjct: 421 KVHVFSNGDYRHHQSDEIYSMLEVC 445



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F    ++F  +P+ NVVS   +IG  ++    EEA+ LF  M    + P+E TF  V+ S
Sbjct: 123 FDEADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAVNLFLEMCREGVTPNESTFPCVLTS 182

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                 L +G+ +HA A K   + +V++G++++  Y +  S+E++   F+  +  NVVS+
Sbjct: 183 VANAGALGVGRSVHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKMNRKNVVSW 242

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLF--IEM 231
             +ICG  +  + E+AL  ++ M    +    V+   ++ G +  G  +E   LF   EM
Sbjct: 243 NALICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGCNHAGLVDEGYALFKTTEM 302

Query: 232 LREGLV-PNH 240
            + G++ P H
Sbjct: 303 EQPGILKPEH 312


>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
 gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
          Length = 460

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 266/447 (59%), Positives = 345/447 (77%), Gaps = 2/447 (0%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE--DLN 125
           +P  +V+SAT  IG   +   + +A+ LFSR+L   + P+EFTFG+V+ S+TAL      
Sbjct: 1   MPHRDVISATAAIGALTRGGRHRDALALFSRVLAGGVAPNEFTFGTVLRSATALRVRAPR 60

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           +G QLHA A K+GL SNVFVGSA+LD Y K+ ++ EA R  +DT  PNVVSYT +I GLL
Sbjct: 61  VGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIAGLL 120

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K   F++A +LF+ MP RNVVSWNAMIGGYSQ G  EEAVNLF+EM R G+ PN ST PC
Sbjct: 121 KNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFPC 180

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + + A+   LG+G+S HA A+KFLGKLDV++GNSL+SFYA+CGS+EDS+L F K+  +N
Sbjct: 181 VLTSVASAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKN 240

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           +V+WNA+ICGYAQNG+GEEA++ +  MR  G++P+ +TLLGLL+ CNHTGLV++GY+ F 
Sbjct: 241 VVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNLTLLGLLFGCNHTGLVDEGYALFK 300

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
            A+ E PG+LKPEHYAC+VDLLSR+ RF EA+ FL +LPF+PGIGFWKALLGGCQIH N 
Sbjct: 301 TAEREQPGILKPEHYACVVDLLSRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIHWNS 360

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           +L E  A+RI ALDP+D SSY++LSN  S +G W +VS +RRE+KEKG+ R+ GCSWIE+
Sbjct: 361 KLAESVAKRIRALDPKDTSSYILLSNVYSASGSWQSVSMVRREIKEKGLKRITGCSWIEV 420

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVLRSC 512
           + KVHVF  GD  HH +DEIY++L SC
Sbjct: 421 QEKVHVFFNGDCRHHQSDEIYSMLESC 447



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 8/221 (3%)

Query: 28  LIETQKASVQKLETPAIRTDSVSCGS-ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQ 86
           + E Q+A     E   +   ++  G  ++  F    ++F  +P+ NVVS   +IG +++ 
Sbjct: 94  MTEAQRALDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQA 153

Query: 87  HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
              EEA+ LF  M    + P+E TF  V+ S  +   L +G+ +HA A K   + +V++G
Sbjct: 154 GLGEEAVNLFLEMCRGGVSPNESTFPCVLTSVASAGTLGVGRSIHASAIKFLGKLDVYIG 213

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           ++++  Y +  S+E++   F+  +  NVVS+  +ICG  +  + E+AL  ++ M    + 
Sbjct: 214 NSLVSFYARCGSLEDSVLAFKKINRKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLK 273

Query: 207 SWN----AMIGGYSQTGRNEEAVNLFIEMLREG---LVPNH 240
             N     ++ G + TG  +E   LF    RE    L P H
Sbjct: 274 PDNLTLLGLLFGCNHTGLVDEGYALFKTAEREQPGILKPEH 314


>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
 gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
          Length = 460

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 266/447 (59%), Positives = 344/447 (76%), Gaps = 2/447 (0%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE--DLN 125
           +P  +V+SAT  IG   +   + +A+ LFSR+L   + P+EFTFG+V+ S+TAL      
Sbjct: 1   MPHRDVISATAAIGALTRGGRHRDALALFSRVLADGVAPNEFTFGTVLRSATALRVRAPR 60

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           +G QLHA A K+GL SNVFVGSA+LD Y K+ ++ EA R  +DT  PNVVSYT +I GLL
Sbjct: 61  VGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIAGLL 120

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K   F++A +LF+ MP RNVVSWNAMIGGYSQ G  EEAVNLF+EM R G+ PN ST PC
Sbjct: 121 KNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFPC 180

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + + A+   LG+G+S HA A+KFLGKLDV++GNSL+SFYA+CGS+EDS+L F K+  +N
Sbjct: 181 VLTSVASAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKN 240

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           +V+WNA+ICGYAQNG+GEEA++ +  MR  G++P+ VTLLGLL+ CNHTGLV++GY+ F 
Sbjct: 241 VVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGCNHTGLVDEGYALFK 300

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
            A+ E PG+LKPEHYAC+VDLLSR+ RF EA+ FL +LPF+PGIGFWKALLGGCQIH N 
Sbjct: 301 TAEREQPGILKPEHYACVVDLLSRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIHWNS 360

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           +L E  A+RI ALDP+D SSY++LSN  S +G W +VS +R E+KEKG+ R+ GCSWIE+
Sbjct: 361 KLAESVAKRIRALDPKDTSSYILLSNVYSASGSWQSVSMVRWEIKEKGLKRITGCSWIEV 420

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVLRSC 512
           + KVHVF  GD  HH +DEIY++L SC
Sbjct: 421 QEKVHVFFNGDCRHHQSDEIYSMLESC 447



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 8/221 (3%)

Query: 28  LIETQKASVQKLETPAIRTDSVSCGS-ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQ 86
           + E Q+A     E   +   ++  G  ++  F    ++F  +P+ NVVS   +IG +++ 
Sbjct: 94  MTEAQRALDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQA 153

Query: 87  HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
              EEA+ LF  M    + P+E TF  V+ S  +   L +G+ +HA A K   + +V++G
Sbjct: 154 GLGEEAVNLFLEMCRGGVSPNESTFPCVLTSVASAGTLGVGRSIHASAIKFLGKLDVYIG 213

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV- 205
           ++++  Y +  S+E++   F+  +  NVVS+  +ICG  +  + E+AL  ++ M    + 
Sbjct: 214 NSLVSFYARCGSLEDSVLAFKKINRKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLK 273

Query: 206 ---VSWNAMIGGYSQTGRNEEAVNLFIEMLREG---LVPNH 240
              V+   ++ G + TG  +E   LF    RE    L P H
Sbjct: 274 PDNVTLLGLLFGCNHTGLVDEGYALFKTAEREQPGILKPEH 314


>gi|357125803|ref|XP_003564579.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Brachypodium distachyon]
          Length = 456

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/445 (59%), Positives = 337/445 (75%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  +VV+AT  IG   +   + +A+ LFSR+L   I P+EFTFG+V+ S+TAL DL +G
Sbjct: 1   MPYRDVVAATAAIGALTRGSRHRDAVTLFSRVLSDGIPPNEFTFGTVLRSATALRDLRVG 60

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            QLHA   K GL SNVFVGSA++D Y K+ ++ EA     DTH PNVVSYT +I G LK 
Sbjct: 61  TQLHACVAKFGLCSNVFVGSALVDHYAKMGAMAEAQSALGDTHEPNVVSYTALIAGFLKN 120

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
             F+DA +LFQ MP RNVVSWNAMIGG SQ G NEEAV LF+EM R+G+ PN ST PC +
Sbjct: 121 GMFDDAHRLFQCMPERNVVSWNAMIGGCSQAGLNEEAVGLFLEMCRQGVRPNDSTFPCVL 180

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            + AN  ALG+G+S HA A+K LGKLDV++GNSL+S YA+CGS+EDS+L F K+ ++N+V
Sbjct: 181 TSVANAGALGVGRSVHASAIKLLGKLDVYIGNSLVSCYARCGSLEDSVLAFRKMKQKNLV 240

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           TWNA+ICGYAQNGRG+EA+  +E MR  G++ + VTLLGLL+ CNH GLV++GYS F  A
Sbjct: 241 TWNALICGYAQNGRGQEALGAYETMRAMGLKADNVTLLGLLFGCNHAGLVDEGYSLFKTA 300

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
           +LE  G+LKPEHYAC+VDLLSR+ RF +AK FL +LPF+PGIGFWK+++GGCQIH N +L
Sbjct: 301 QLEQAGILKPEHYACVVDLLSRANRFDDAKRFLQELPFEPGIGFWKSMIGGCQIHWNKDL 360

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            E  A RI ALDP+D SSY++LSN  S AG W +VS IRR++KEKG+ R+ GCSWIE+++
Sbjct: 361 AESVAERIQALDPKDTSSYILLSNVYSAAGSWQSVSMIRRQIKEKGLKRITGCSWIEVQN 420

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSC 512
            VHVF  GD  H   DEIY +L SC
Sbjct: 421 DVHVFFNGDSRHSQCDEIYMMLESC 445



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 106/202 (52%), Gaps = 7/202 (3%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F   H++F  +P+ NVVS   +IG  ++    EEA+ LF  M    +RP++ TF  V+ S
Sbjct: 123 FDDAHRLFQCMPERNVVSWNAMIGGCSQAGLNEEAVGLFLEMCRQGVRPNDSTFPCVLTS 182

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                 L +G+ +HA A K+  + +V++G++++  Y +  S+E++   F      N+V++
Sbjct: 183 VANAGALGVGRSVHASAIKLLGKLDVYIGNSLVSCYARCGSLEDSVLAFRKMKQKNLVTW 242

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWN----AMIGGYSQTGRNEEAVNLF--IEM 231
             +ICG  +  R ++AL  ++ M    + + N     ++ G +  G  +E  +LF   ++
Sbjct: 243 NALICGYAQNGRGQEALGAYETMRAMGLKADNVTLLGLLFGCNHAGLVDEGYSLFKTAQL 302

Query: 232 LREGLV-PNHSTLPCAIIAAAN 252
            + G++ P H      +++ AN
Sbjct: 303 EQAGILKPEHYACVVDLLSRAN 324


>gi|115440947|ref|NP_001044753.1| Os01g0839400 [Oryza sativa Japonica Group]
 gi|15623829|dbj|BAB67888.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|21104616|dbj|BAB93208.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534284|dbj|BAF06667.1| Os01g0839400 [Oryza sativa Japonica Group]
 gi|125572581|gb|EAZ14096.1| hypothetical protein OsJ_04019 [Oryza sativa Japonica Group]
          Length = 456

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 262/445 (58%), Positives = 340/445 (76%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  +VVSAT  IG   +   + +A+ LFS +L   I P+EFTFG+++ S++AL DL +G
Sbjct: 1   MPHRDVVSATAAIGALTRSGRHRDAVALFSGILGDGIVPNEFTFGTILQSASALRDLRVG 60

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            QLHA   K+GL SNVFVGSA++D Y K+ S+ EA    +DT  PNVVSYT +I G LK 
Sbjct: 61  AQLHACVAKLGLCSNVFVGSALVDHYAKMGSVREAQGALQDTREPNVVSYTALIAGFLKN 120

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
               DA +LF+ MP RNV+SWNAMIGG S+ G NEEAVNLF+EM REG+ PN ST PC +
Sbjct: 121 GMSGDAARLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLL 180

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            + AN  ALG+G+S HA A+KFLGKLDVF GNSL+SFYA+CGS++DS+L F K+  +N+V
Sbjct: 181 TSVANAGALGVGRSIHASAIKFLGKLDVFAGNSLVSFYARCGSLDDSVLAFKKIKNKNVV 240

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WNA+ICGYAQNGRGEEA++ F RM+  G++ + VTLLGLL+ CNH GLV++GYS F  A
Sbjct: 241 SWNALICGYAQNGRGEEALDAFRRMKATGLKLDRVTLLGLLFGCNHAGLVDEGYSLFRTA 300

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
           ++E PG+L+PEHYAC+VDL SR+ RF +AK FL +LPF+PGIGFWK+L+GGCQIH N EL
Sbjct: 301 EMEQPGVLRPEHYACVVDLFSRAKRFDDAKRFLENLPFEPGIGFWKSLIGGCQIHWNREL 360

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            +  A+ I ALDP+D SSY++LSN  S AG W +VS IRRE+KEKG+ R+ GCSWIE+++
Sbjct: 361 AKSVAKHIHALDPKDTSSYILLSNVYSAAGSWQDVSMIRREIKEKGLKRITGCSWIEVQN 420

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSC 512
           +VHVF  GDR H  +D+IY +L SC
Sbjct: 421 QVHVFFNGDRRHPKSDDIYMMLESC 445



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 7/185 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F  +P+ NV+S   +IG  +K    EEA+ LF  M    +RP+E TF  ++ S     
Sbjct: 128 RLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAG 187

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L +G+ +HA A K   + +VF G++++  Y +  S++++   F+   N NVVS+  +IC
Sbjct: 188 ALGVGRSIHASAIKFLGKLDVFAGNSLVSFYARCGSLDDSVLAFKKIKNKNVVSWNALIC 247

Query: 183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLF--IEMLREGL 236
           G  +  R E+AL  F+ M    +    V+   ++ G +  G  +E  +LF   EM + G+
Sbjct: 248 GYAQNGRGEEALDAFRRMKATGLKLDRVTLLGLLFGCNHAGLVDEGYSLFRTAEMEQPGV 307

Query: 237 V-PNH 240
           + P H
Sbjct: 308 LRPEH 312


>gi|125528323|gb|EAY76437.1| hypothetical protein OsI_04370 [Oryza sativa Indica Group]
          Length = 456

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 262/445 (58%), Positives = 340/445 (76%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  +VVSAT  IG   +   + +A+ LFS +L   I P+EFTFG+++ S++AL DL +G
Sbjct: 1   MPHRDVVSATAAIGALTRSGRHRDAVALFSGILGDGIVPNEFTFGTILQSASALRDLRVG 60

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            QLHA   K+GL SNVFVGSA++D Y K+ S+ EA    +DT  PNVVSYT +I G LK 
Sbjct: 61  AQLHACVAKLGLCSNVFVGSALVDHYAKMGSVREAQGALQDTREPNVVSYTALIAGFLKN 120

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
               DA +LF+ MP RNV+SWNAMIGG S+ G NEEAVNLF+EM REG+ PN ST PC +
Sbjct: 121 GMSGDAARLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLL 180

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            + AN  ALG+G+S HA A+KFLGKLDVF GNSL+SFYA+CGS++DS+L F K+  +N+V
Sbjct: 181 TSVANAGALGVGRSIHASAIKFLGKLDVFAGNSLVSFYARCGSLDDSVLAFKKIKNKNVV 240

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WNA+ICGYAQNGRGEEA++ F RM+  G++P+ VTLLGLL+ CNH GLV++GYS F  A
Sbjct: 241 SWNALICGYAQNGRGEEALDAFRRMKATGLKPDRVTLLGLLFGCNHAGLVDEGYSLFRTA 300

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
           ++E PG+L+PEHYAC+VDL SR+ RF +AK FL +LPF+PGI FWK+L+GGCQIH N EL
Sbjct: 301 EMEQPGVLRPEHYACVVDLFSRAKRFDDAKRFLENLPFEPGIVFWKSLIGGCQIHWNREL 360

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            +  A+ I ALDP+D SSY++LSN  S AG W +VS IRRE+KEKG+ R+ GCSWIE+++
Sbjct: 361 AKSVAKHIHALDPKDTSSYILLSNVYSAAGSWQDVSMIRREIKEKGLKRITGCSWIEVQN 420

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSC 512
           +VHVF  GDR H  +D+IY +L SC
Sbjct: 421 QVHVFFNGDRRHPKSDDIYMMLESC 445



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 11/187 (5%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F  +P+ NV+S   +IG  +K    EEA+ LF  M    +RP+E TF  ++ S     
Sbjct: 128 RLFRCMPERNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAG 187

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L +G+ +HA A K   + +VF G++++  Y +  S++++   F+   N NVVS+  +IC
Sbjct: 188 ALGVGRSIHASAIKFLGKLDVFAGNSLVSFYARCGSLDDSVLAFKKIKNKNVVSWNALIC 247

Query: 183 GLLKRERFEDALKLFQEM------PHRNVVSWNAMIGGYSQTGRNEEAVNLF--IEMLRE 234
           G  +  R E+AL  F+ M      P R  V+   ++ G +  G  +E  +LF   EM + 
Sbjct: 248 GYAQNGRGEEALDAFRRMKATGLKPDR--VTLLGLLFGCNHAGLVDEGYSLFRTAEMEQP 305

Query: 235 GLV-PNH 240
           G++ P H
Sbjct: 306 GVLRPEH 312


>gi|297795265|ref|XP_002865517.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311352|gb|EFH41776.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 396

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/391 (62%), Positives = 310/391 (79%), Gaps = 7/391 (1%)

Query: 137 VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKL 196
           +GL SNVFVGSA+L+ Y+KLS++ +A R F+DT +PN+VS T +I G LK+  FE+AL L
Sbjct: 1   IGLASNVFVGSAVLNCYVKLSALTDARRSFDDTRDPNIVSITNLISGYLKKHEFEEALSL 60

Query: 197 FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAA 255
           F+ MP R+VV+WNA+IGG+SQTG+NEEAVN F++MLREGLV PN ST P  I A +NIA+
Sbjct: 61  FRTMPERSVVTWNAVIGGFSQTGQNEEAVNTFVDMLREGLVLPNESTFPSTITAISNIAS 120

Query: 256 LGMGKSFHACAVKFLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAV 312
            G GKS HACA+KFLGK  +VFVGNSLISFY+KCG+MEDSLL F+KL E  RNIV+WN++
Sbjct: 121 HGAGKSIHACAIKFLGKRFNVFVGNSLISFYSKCGNMEDSLLAFNKLQEEQRNIVSWNSM 180

Query: 313 ICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA--KL 369
           I GYA NGRGEEA+  FE+M +   ++PN VTLLGLL+ACNH GL+++GY+YF++A    
Sbjct: 181 IWGYAHNGRGEEAVAMFEKMIKDTNLKPNNVTLLGLLFACNHAGLIQEGYTYFNKAVNDY 240

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
           +DP +++PEHYACMVD+LSRSGRFKEA+E +  +P DPGIGFWKALLGGCQIHSN  L +
Sbjct: 241 DDPNLIQPEHYACMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGCQIHSNKRLAK 300

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
            AA +IL +DP DVSSYVMLSNA S    W +VS IRR+MKE G+ R  GCSWIEIK +V
Sbjct: 301 LAASKILEMDPRDVSSYVMLSNAYSALENWQDVSLIRRKMKETGLKRFTGCSWIEIKGQV 360

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
            VFV  D+N+ + DE+Y +L   T+Q+ E E
Sbjct: 361 RVFVNADKNNELKDEVYRMLACITQQLDEDE 391



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 4/159 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-I 104
           T+ +S   +  +F     +F  +P+ +VV+   +IG F++    EEA+  F  ML    +
Sbjct: 42  TNLISGYLKKHEFEEALSLFRTMPERSVVTWNAVIGGFSQTGQNEEAVNTFVDMLREGLV 101

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEAT 163
            P+E TF S I + + +     GK +HA A K +G + NVFVG++++  Y K  ++E++ 
Sbjct: 102 LPNESTFPSTITAISNIASHGAGKSIHACAIKFLGKRFNVFVGNSLISFYSKCGNMEDSL 161

Query: 164 RVFEDTHNP--NVVSYTTMICGLLKRERFEDALKLFQEM 200
             F        N+VS+ +MI G     R E+A+ +F++M
Sbjct: 162 LAFNKLQEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKM 200


>gi|26453038|dbj|BAC43595.1| unknown protein [Arabidopsis thaliana]
          Length = 333

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/328 (62%), Positives = 257/328 (78%), Gaps = 7/328 (2%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGM 258
           MP R+VV+WNA+IGG+SQTGRNEEAVN F++MLREG+V PN ST PCAI A +NIA+ G 
Sbjct: 1   MPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITAISNIASRGA 60

Query: 259 GKSFHACAVKFLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICG 315
           GKS HACA+KFLGK  +VFV NSLISFY+KCG+M DSLL F+KL E  RNIV+WN++I G
Sbjct: 61  GKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMGDSLLAFNKLEEEQRNIVSWNSMIWG 120

Query: 316 YAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA--KLEDP 372
           YA NGRGEEA+  FE+M +   +RPN VT+LG+L+ACNH GL+++GY YF++A    +DP
Sbjct: 121 YAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEGYMYFNKAVNDYDDP 180

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
            +L+ EHYACMVD+LSRS RFKEA+E +  +P DPGIGFWKALLGGCQIHSN  L + AA
Sbjct: 181 NLLELEHYACMVDMLSRSDRFKEAEELIKSMPLDPGIGFWKALLGGCQIHSNKRLAKLAA 240

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVF 492
            +IL LDP DVSSYVMLSNA S    W NVS IRR+MKE G+ R  GCSWIE++ ++ VF
Sbjct: 241 SKILELDPRDVSSYVMLSNAYSAMENWQNVSLIRRKMKETGLKRFTGCSWIEVRDQIRVF 300

Query: 493 VTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           V  D+N+ + DE+Y +L   ++ + E E
Sbjct: 301 VNADKNNELKDEVYRMLALVSQHLEENE 328



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 33/192 (17%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTFGSVIPSSTALEDLNL 126
           +P+ +VV+   +IG F++    EEA+  F  ML   +  P+E TF   I + + +     
Sbjct: 1   MPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITAISNIASRGA 60

Query: 127 GKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           GK +HA A K +G + NVFV ++++  Y K  ++ ++   F                   
Sbjct: 61  GKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMGDSLLAFN------------------ 102

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLP 244
                    KL +E   RN+VSWN+MI GY+  GR EEAV +F +M+++  L PN+ T+ 
Sbjct: 103 ---------KLEEE--QRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTI- 150

Query: 245 CAIIAAANIAAL 256
             ++ A N A L
Sbjct: 151 LGVLFACNHAGL 162


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/521 (38%), Positives = 311/521 (59%), Gaps = 19/521 (3%)

Query: 5   LCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQV 64
           L  C   + LN  +++H+L       T       L     +  SV+C  E         V
Sbjct: 154 LSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEE---------V 204

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  + + N+V+  ++I  + +     EA+ +F RM+   + P E T  SV+ +  +L  L
Sbjct: 205 FSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCAL 264

Query: 125 NLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             G Q+HA   K    + ++ +G+A++D+Y K S + EA RVF+     NVVS T+M+ G
Sbjct: 265 KEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSG 324

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             +    + A  +F +M  RNVVSWNA+I GY+Q G NEEA+ LF  + RE + P H T 
Sbjct: 325 YARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTF 384

Query: 244 PCAIIAAANIAALGMGKSFHACAVK------FLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
              + A AN+A L +G+  H   +K         + D+FVGNSLI  Y KCGS+ED   V
Sbjct: 385 GNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRV 444

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+K+ ER+ V+WNA+I GYAQNG G EA++ F +M + G +P+ VT++G+L AC+H GLV
Sbjct: 445 FEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLV 504

Query: 358 EKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           E+G  YF    +E+ G++   +HY CMVDLL R+G   EAK  +  +P +P    W +LL
Sbjct: 505 EEGRHYF--FSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLL 562

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C++H N+E+G+ AA ++L +DP +   YV+LSN  +  G+W +V  +R+ M+++G+T+
Sbjct: 563 AACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTK 622

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            PGCSWIE++S+VHVF+  D++H    +IY+VL+  TEQ++
Sbjct: 623 QPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMK 663



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 172/363 (47%), Gaps = 74/363 (20%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  ++S       ++F  +P+ +  S  +++  FA+   +EE++  F +M   +   +E
Sbjct: 88  ISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNE 147

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           ++FGS + +   L DLN+G Q+HA  +K    ++V++GSA++D+Y K  S+  A  VF  
Sbjct: 148 YSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSG 207

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                          M  RN+V+WN++I  Y Q G   EA+ +F
Sbjct: 208 -------------------------------MIERNLVTWNSLITCYEQNGPASEALEVF 236

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAK 287
           + M+  GL P+  TL   + A A++ AL  G   HA  VK    + D+ +GN+L+  YAK
Sbjct: 237 VRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAK 296

Query: 288 CGSMEDSLLVFD-------------------------------KLTERNIVTWNAVICGY 316
           C  + ++  VFD                               K+T+RN+V+WNA+I GY
Sbjct: 297 CSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGY 356

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-----------NHTGLVEKGYSYFS 365
            QNG  EEA+  F  ++   I P   T   LL AC            HT ++++G+ + S
Sbjct: 357 TQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQS 416

Query: 366 QAK 368
            A+
Sbjct: 417 GAE 419



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 154/296 (52%), Gaps = 8/296 (2%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+   F  ++ S          + +HA          +F+ + ++D+Y K   +++A ++
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+     N  ++ ++I  L K    ++A +LF  MP  +  SWN+M+ G++Q  R EE++
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
             F++M RE  + N  +   A+ A A +  L MG   HA   K     DV++G++LI  Y
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           +KCGS+  +  VF  + ERN+VTWN++I  Y QNG   EA+E F RM  +G+ P+ VTL 
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 346 GLLWACNHTGLVEKGYSYFSQA----KLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            ++ AC     +++G    ++     K  D  +L       +VD+ ++  +  EA+
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGN----ALVDMYAKCSKVNEAR 304


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/466 (40%), Positives = 284/466 (60%), Gaps = 7/466 (1%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +S  + FD++   N+VS  ++I  + +     +A+ +F RM+   I P E T  SV  + 
Sbjct: 203 ASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASAC 262

Query: 119 TALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            +L  +  G Q+HA   K    ++++ +G+A++D+Y K   + EA  VF+     +VVS 
Sbjct: 263 ASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSE 322

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T+M+ G  K    + A  +F  M  RNVVSWNA+I GY+Q G NEEAV LF+ + RE + 
Sbjct: 323 TSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIW 382

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVK--FLGKL----DVFVGNSLISFYAKCGSM 291
           P H T    + A AN+A L +G+  H   +K  F  K     D+FVGNSLI  Y KCG +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLV 442

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           ED  LVF+++ ER+ V+WNA+I GYAQNG G EA+E F  M ++G RP+ VT++G+L AC
Sbjct: 443 EDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSAC 502

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GLVE+G  YF    +E   +   +HY CMVDLL R+G   EA   +  +P +P    
Sbjct: 503 SHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVV 562

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W +LL  C++H N+ LG++ A R+L +DP +   YV+LSN  +  G+W +V  +R++M++
Sbjct: 563 WGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQ 622

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            G+ + PGCSWI I+S +HVF+  D+ H    +IY +L+  TEQ++
Sbjct: 623 MGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMK 668



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 4/305 (1%)

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
            L+  P      + + S +  E     + +HA   K    S +F+ + ++D+Y K   +E
Sbjct: 16  FLDSSPFAKLLDTCVKSKSVFE----ARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLE 71

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
           +A +VF+     N  S+  ++  L K    ++AL LF+ MP R+  SWNAM+ G++Q  R
Sbjct: 72  DARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDR 131

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            EEA+   ++M  E  V N  +   A+ A A +  L +G   H    K    LDV++G++
Sbjct: 132 FEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSA 191

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L+  Y+KC  +  +   FD +  RNIV+WN++I  Y QNG   +A+E F RM   GI P+
Sbjct: 192 LVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPD 251

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            +TL  +  AC     + +G    ++    D           +VD+ ++  R  EA+   
Sbjct: 252 EITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVF 311

Query: 401 YDLPF 405
             +P 
Sbjct: 312 DRMPL 316



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 74/345 (21%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +P+ +  S   ++  FA++  +EEA+     M   +   +E++FGS + +   L D
Sbjct: 107 LFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMD 166

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L++G Q+H    K     +V++GSA++D+Y K   +  A R F+D               
Sbjct: 167 LSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDD--------------- 211

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                           M  RN+VSWN++I  Y Q G   +A+ +F+ M+  G+ P+  TL
Sbjct: 212 ----------------MDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITL 255

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDK-- 300
                A A+++A+  G   HA  +K    + D+ +GN+L+  YAKC  + ++ LVFD+  
Sbjct: 256 ASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMP 315

Query: 301 -----------------------------LTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
                                        + ERN+V+WNA+I GY QNG  EEA+  F  
Sbjct: 316 LRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLL 375

Query: 332 MRINGIRPNGVTLLGLLWAC-----------NHTGLVEKGYSYFS 365
           ++   I P   T   LL AC            HT +++ G+ + S
Sbjct: 376 LKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKS 420



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 11/213 (5%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  +++    +   +F  + + NVVS   +I  + +    EEA+ LF  +   +I 
Sbjct: 323 TSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIW 382

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL------QSNVFVGSAILDLYIKLSSI 159
           P+ +TFG+++ +   L DL LG+Q H    K G        S++FVG++++D+Y+K   +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLV 442

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGY 215
           E+   VFE     + VS+  MI G  +     +AL++F+EM       + V+   ++   
Sbjct: 443 EDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSAC 502

Query: 216 SQTGRNEEAVNLFIEM-LREGLVPNHSTLPCAI 247
           S  G  EE    F  M +  GLVP      C +
Sbjct: 503 SHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMV 535


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/475 (39%), Positives = 288/475 (60%), Gaps = 9/475 (1%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           IR+  V   ++ ++     +VFD +P+ NVVS  ++I  + +     EA+ LF  M+   
Sbjct: 188 IRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAG 247

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEA 162
             P E T  SV+ +   L     G+Q+HA   K   L+ ++ + +A++D+Y K     EA
Sbjct: 248 FSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEA 307

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             +F+   + ++VS T+++ G  K    EDA  +F +M  +NV++WN +I  Y+Q G  E
Sbjct: 308 RCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEE 367

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK------FLGKLDVF 276
           EA+ LF+++ R+ + P H T    + A  NIA L +G+  H   +K      F  + DVF
Sbjct: 368 EAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVF 427

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           VGNSL+  Y K GS++D   VF+++  R+ V+WNA+I GYAQNGR ++A+  FERM  + 
Sbjct: 428 VGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSN 487

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKE 395
             P+ VT++G+L AC H+GLV++G  YF  +  ED G+    +HY CMVDLL R+G  KE
Sbjct: 488 ENPDSVTMIGVLSACGHSGLVDEGRRYF-HSMTEDHGITPSRDHYTCMVDLLGRAGHLKE 546

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455
           A+E + D+P +P    W +LLG C++H NVELGE+ A R+  LDP++   YV+LSN  + 
Sbjct: 547 AEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAE 606

Query: 456 AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
            GKW  V  +RR MK++G+++ PGCSWIEI  K++VF+  D+ H   +EI+  LR
Sbjct: 607 MGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDKRHPCRNEIHNTLR 661



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 170/414 (41%), Gaps = 102/414 (24%)

Query: 17  LSKLHSLAPNYLIETQKASVQKLETPA-----IRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           L+ L   APN L   + A  + L++P      +    VS  +   +     +VFDE+P  
Sbjct: 23  LADLLRSAPN-LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLR 81

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRM----------------------------LLLN 103
           N  S   ++  +A+    +EA  LF  +                             L  
Sbjct: 82  NTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAA 141

Query: 104 IRPSEF-----TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           +   +F     +F S + +  A +D   G+Q+H    +     +V + SA++D+Y K   
Sbjct: 142 MHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCER 201

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
            E+A RVF+     NVVS+                               N++I  Y Q 
Sbjct: 202 PEDARRVFDAMPERNVVSW-------------------------------NSLITCYEQN 230

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFV 277
           G   EA+ LF+EM+  G  P+  TL   + A A +AA   G+  HA  VK    + D+ +
Sbjct: 231 GPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVL 290

Query: 278 GNSLISFYAKCG-------------------------------SMEDSLLVFDKLTERNI 306
            N+L+  YAKCG                               ++ED+ +VF ++ E+N+
Sbjct: 291 NNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNV 350

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + WN +I  YAQNG  EEAI  F +++ + I P   T   +L AC +   ++ G
Sbjct: 351 IAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLG 404



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 144/310 (46%), Gaps = 11/310 (3%)

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +L+  +  HA   K  +    F+ + ++  Y +L  + +A RVF++    N  SY  ++ 
Sbjct: 32  NLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLS 91

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE--EAVNLFIEMLREGLVPNH 240
              +  R ++A  LF+ +P  +  S+NA++   ++ GR    +A+     M  +  V N 
Sbjct: 92  AYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNA 151

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            +   A+ A A       G+  H    +     DV + ++L+  YAKC   ED+  VFD 
Sbjct: 152 YSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDA 211

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN+V+WN++I  Y QNG   EA+  F  M   G  P+ VTL  ++ AC       +G
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREG 271

Query: 361 YSYFSQA----KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
               +      +L D  +L       +VD+ ++ GR  EA+     +P    I    ++L
Sbjct: 272 RQVHAHMVKCDRLRDDMVLN----NALVDMYAKCGRTWEARCIFDSMP-SRSIVSETSIL 326

Query: 417 GGCQIHSNVE 426
            G    +NVE
Sbjct: 327 TGYAKSANVE 336


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/515 (38%), Positives = 299/515 (58%), Gaps = 37/515 (7%)

Query: 5   LCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQV 64
           L  C   + LN  +++H+L       T       L     +  SV+C  E         V
Sbjct: 154 LSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEE---------V 204

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  + + N+V+  ++I  + +     EA+ +F RM+   + P E T  SV+ +  +L  L
Sbjct: 205 FSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCAL 264

Query: 125 NLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             G Q+HA   K    + ++ +G+A++D+Y K S + EA RVF+     NVVS T+M+ G
Sbjct: 265 KEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSG 324

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             +    + A  +F +M  RNVVSWNA+I GY+Q G NEEA+ LF  + RE + P H T 
Sbjct: 325 YARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTF 384

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                                     L K D+FVGNSLI  Y KCGS+ED   VF+K+ E
Sbjct: 385 ------------------------GNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKE 420

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ V+WNA+I GYAQNG G EA++ F +M + G +P+ VT++G+L AC+H GLVE+G  Y
Sbjct: 421 RDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHY 480

Query: 364 FSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           F    +E+ G++   +HY CMVDLL R+G   EAK  +  +P +P    W +LL  C++H
Sbjct: 481 F--FSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVH 538

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+E+G+ AA ++L +DP +   YV+LSN  +  G+W +V  +R+ M+++G+T+ PGCSW
Sbjct: 539 GNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSW 598

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           IE++S+VHVF+  D++H    +IY+VL+  TEQ++
Sbjct: 599 IEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMK 633



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 154/296 (52%), Gaps = 8/296 (2%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+   F  ++ S          + +HA          +F+ + ++D+Y K   +++A ++
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+     N  ++ ++I  L K    ++A +LF  MP  +  SWN+M+ G++Q  R EE++
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
             F++M RE  + N  +   A+ A A +  L MG   HA   K     DV++G++LI  Y
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           +KCGS+  +  VF  + ERN+VTWN++I  Y QNG   EA+E F RM  +G+ P+ VTL 
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 346 GLLWACNHTGLVEKGYSYFSQA----KLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            ++ AC     +++G    ++     K  D  +L       +VD+ ++  +  EA+
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGN----ALVDMYAKCSKVNEAR 304


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/522 (36%), Positives = 305/522 (58%), Gaps = 20/522 (3%)

Query: 5   LCICRSSLSLNKLSKLHSL--APNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH 62
           L  C     LN   ++H+L     YL++    S       A+      CG      +   
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGS-------ALVDMYSKCGV----VACAQ 206

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           + FD +   N+VS  ++I  + +     +A+ +F  M+   + P E T  SV+ +  +  
Sbjct: 207 RAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWS 266

Query: 123 DLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            +  G Q+HA   K    ++++ +G+A++D+Y K   + EA  VF+     NVVS T+M+
Sbjct: 267 AIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMV 326

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG  +    + A  +F  M  +NVVSWNA+I GY+Q G NEEAV LF+ + RE + P H 
Sbjct: 327 CGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHY 386

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVK----FLG--KLDVFVGNSLISFYAKCGSMEDSL 295
           T    + A AN+A L +G+  H   +K    F    + D+FVGNSLI  Y KCG +ED  
Sbjct: 387 TFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGC 446

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           LVF+++ ER++V+WNA+I GYAQNG G  A+E F +M ++G +P+ VT++G+L AC+H G
Sbjct: 447 LVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAG 506

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           LVE+G  YF   + E       +H+ CMVDLL R+G   EA + +  +P  P    W +L
Sbjct: 507 LVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSL 566

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C++H N+ELG++ A +++ +DP +   YV+LSN  +  G+W +V  +R++M+++G+ 
Sbjct: 567 LAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVI 626

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + PGCSWIEI+S+VHVF+  D+ H +  +I+ VL+  TEQ++
Sbjct: 627 KQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMK 668



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 155/311 (49%), Gaps = 4/311 (1%)

Query: 95  LFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYI 154
           L   +  L+  P      S + S + ++     +++HA   K    S +F+ + ++D Y 
Sbjct: 10  LVGELCFLDSSPFAKLLDSCVRSKSGID----ARRIHARIIKTQFSSEIFIQNRLVDAYG 65

Query: 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
           K    E+A +VF+     N  SY  ++  L K  + ++A  +F+ MP  +  SWNAM+ G
Sbjct: 66  KCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSG 125

Query: 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
           ++Q  R EEA+  F++M  E  V N  +   A+ A A +  L MG   HA   K    LD
Sbjct: 126 FAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLD 185

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
           V++G++L+  Y+KCG +  +   FD +  RNIV+WN++I  Y QNG   +A+E F  M  
Sbjct: 186 VYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMD 245

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           NG+ P+ +TL  ++ AC     + +G    ++    D           +VD+ ++  R  
Sbjct: 246 NGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVN 305

Query: 395 EAKEFLYDLPF 405
           EA+     +P 
Sbjct: 306 EARLVFDRMPL 316



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 158/342 (46%), Gaps = 63/342 (18%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K      VF  +P+ +  S   ++  FA+   +EEA+  F  M   +   +E++FGS + 
Sbjct: 100 KLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALS 159

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L DLN+G Q+HA  +K     +V++GSA++D+Y K   +  A R F+         
Sbjct: 160 ACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDG-------- 211

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                                  M  RN+VSWN++I  Y Q G   +A+ +F+ M+  G+
Sbjct: 212 -----------------------MAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGV 248

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSL 295
            P+  TL   + A A+ +A+  G   HA  VK    + D+ +GN+L+  YAKC  + ++ 
Sbjct: 249 EPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEAR 308

Query: 296 LVFDK-------------------------------LTERNIVTWNAVICGYAQNGRGEE 324
           LVFD+                               + E+N+V+WNA+I GY QNG  EE
Sbjct: 309 LVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEE 368

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           A+  F  ++   I P   T   LL AC +   ++ G    +Q
Sbjct: 369 AVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQ 410


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 189/475 (39%), Positives = 287/475 (60%), Gaps = 9/475 (1%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T  V   ++ ++     +VFD +P+ NVVS  ++I  + +     EA+ LF  M+   
Sbjct: 188 IGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATG 247

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEA 162
             P E T  SV+ +   L     G+Q+HA   K   L+ ++ + +A++D+Y K     EA
Sbjct: 248 FFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEA 307

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             +F+   + +VVS T+++ G  K    EDA  +F +M  +NV++WN +I  Y+Q G  E
Sbjct: 308 RCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEE 367

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK------FLGKLDVF 276
           EA+ LF+++ R+ + P H T    + A  NIA L +G+  H   +K      F  + DVF
Sbjct: 368 EAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVF 427

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           VGNSL+  Y K GS++D   VF+++  R+ V+WNA+I GYAQNGR ++A+  FERM  + 
Sbjct: 428 VGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSN 487

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKE 395
             P+ VT++G+L AC H+GLV++G  +F     ED G+    +HY CMVDLL R+G  KE
Sbjct: 488 ENPDSVTMIGVLSACGHSGLVDEGRRHF-HFMTEDHGITPSRDHYTCMVDLLGRAGHLKE 546

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455
           A+E + D+P +P    W +LLG C++H NVELGE  A R+  LDPE+   YV+LSN  + 
Sbjct: 547 AEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLSNMYAE 606

Query: 456 AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
            GKW +V  +RR MK++G+++ PGCSWIEI SK++VF+  D  H   +EI++ LR
Sbjct: 607 MGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTLR 661



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 140/306 (45%), Gaps = 11/306 (3%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
            +  H    K  +    F+ + ++  Y +L  + EA RVF+     N  SY  ++    +
Sbjct: 36  ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYAR 95

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE--EAVNLFIEMLREGLVPNHSTLP 244
             R ++A  LF+ +P  +  S+NA++   ++ GR    +A+     M  +  V N  +  
Sbjct: 96  LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFA 155

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
            A+ A A    L  G+  H    +     DV +G +L+  YAKC    D+  VFD + ER
Sbjct: 156 SALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPER 215

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           N+V+WN++I  Y QNG   EA+  F  M   G  P+ VTL  ++ AC       +G    
Sbjct: 216 NVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVH 275

Query: 365 S----QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           +    + +L D  +L       +VD+ ++ GR  EA+     +P    +    ++L G  
Sbjct: 276 AHMVKRDRLRDDMVLN----NALVDMYAKCGRTWEARCIFDSMP-SRSVVSETSILAGYA 330

Query: 421 IHSNVE 426
             +NVE
Sbjct: 331 KSANVE 336


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 185/502 (36%), Positives = 295/502 (58%), Gaps = 32/502 (6%)

Query: 40  ETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           +T A +T  ++  ++  +      +FDE+ + NVV+   II  + +    +EA  LF +M
Sbjct: 456 QTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKM 515

Query: 100 --------------------------LLLNIR-----PSEFTFGSVIPSSTALEDLNLGK 128
                                     LL+ +      PS+ +F S + +   + D+ +G+
Sbjct: 516 PVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGR 575

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
            +H+ A K G Q N +V + ++ +Y K  ++E+ + VF      + VS+ ++I GL +  
Sbjct: 576 VIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENY 635

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
             +DA  +F++MP R+VVSW A+I  Y Q G  E A++LF++ML  G+ PN  T+   + 
Sbjct: 636 MLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLS 695

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A  N+ A+ +G+ FHA   K      +FVGNSLI+ Y KCG  ED   VF+++ E +++T
Sbjct: 696 ACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLIT 754

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           WNAV+ G AQNG G+EAI+ FE+M + GI P+ ++ LG+L AC+H GLV++G+++F+   
Sbjct: 755 WNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMT 814

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
            +   M    HY CMVDLL R+G   EA+  + ++P  P    W+ALLG C+IH NVELG
Sbjct: 815 QKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELG 874

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
           +  A R+  +     ++YV+LSN  +  G WD V+ IR+ MK++G+T+ PG SWI++K+K
Sbjct: 875 QRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNK 934

Query: 489 VHVFVTGDRNHHMNDEIYAVLR 510
           +H FVTGDR H   +EIY+ L+
Sbjct: 935 LHCFVTGDRTHDQIEEIYSALK 956



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 164/330 (49%), Gaps = 70/330 (21%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+ +P+ N  S TT+I  FA+    ++AI L+ R                +P  T     
Sbjct: 419 FETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER----------------VPEQTV---- 458

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
                    ATK          +A++  Y ++  I++A  +F++  NPNVV++  +I G 
Sbjct: 459 ---------ATK----------TAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGY 499

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
            +    ++A  LFQ+MP +N  SW AMI G+ Q   + EA+ L IE+ R G VP+ S+  
Sbjct: 500 TQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFT 559

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME------------ 292
            A+ A ANI  + +G+  H+ A+K   + + +V N LIS YAKCG++E            
Sbjct: 560 SALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK 619

Query: 293 -------------------DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
                              D+ +VF+K+ +R++V+W A+I  Y Q G GE A++ F  M 
Sbjct: 620 DTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDML 679

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
             GI+PN +T+  LL AC + G ++ G  +
Sbjct: 680 ARGIKPNQLTVTSLLSACGNLGAIKLGEQF 709



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 189/419 (45%), Gaps = 46/419 (10%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + S   ++FD++P+ N VS   +I  +     Y EA  +F +M     RP +  F  V+ 
Sbjct: 310 RMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLS 369

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           + T L+DL L   L   A K G + +V VGSAIL+ Y +  S++ A   FE     N  S
Sbjct: 370 AITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYS 429

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +TTMI    +  R +DA++L++ +P + V +  AM+  Y+Q GR ++A  +F E+L    
Sbjct: 430 WTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILN--- 486

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN                                   V   N++I+ Y + G ++++  
Sbjct: 487 -PN-----------------------------------VVAWNAIIAGYTQNGMLKEAKD 510

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F K+  +N  +W A+I G+ QN    EA+E    +  +G  P+  +    L AC + G 
Sbjct: 511 LFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGD 570

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VE G    S A ++            ++ + ++ G  ++       +     +  W +L+
Sbjct: 571 VEIGRVIHSLA-IKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVS-WNSLI 628

Query: 417 GGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
            G  +  N  L +  AR +    P+ DV S+  + +A   AG  +   ++  +M  +G+
Sbjct: 629 SG--LSENYMLDD--ARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGI 683



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 199/417 (47%), Gaps = 31/417 (7%)

Query: 13  SLNKLSKLHSLAPNYL-----IETQKASVQKLETPAIRTDSVSCGSESDKFSSV------ 61
           S +KL+  H+   +YL     +   K+  +  ETP  +T    C +   +   +      
Sbjct: 133 SQSKLNTRHARWMDYLQQFKFVIRHKSGAKNKETP--QTHLFQCNTRIQELGRLGRVEEA 190

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VF+E+   +VVS  ++I  +++    +EA  LF   +  NIR    T+  ++      
Sbjct: 191 RRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWTILLTGYAKE 246

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +   +++    T    + NV   +A++  Y++   ++ A ++F++    NV S+ +++
Sbjct: 247 GRIEEAREVFESMT----ERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVV 302

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G     R  +A +LF +MP RN VSW  MI GY       EA ++F++M R    P+ S
Sbjct: 303 TGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQS 362

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A   +  L +  S    A+K   + DV VG+++++ Y + GS++ ++  F+ +
Sbjct: 363 IFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETM 422

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ERN  +W  +I  +AQ GR ++AI+ +ER+    +     T   ++ A    G ++K  
Sbjct: 423 PERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKAR 478

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             F +  + +P ++    +  ++   +++G  KEAK+    +P       W A++ G
Sbjct: 479 LIFDE--ILNPNVVA---WNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS-WAAMIAG 529


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 182/463 (39%), Positives = 278/463 (60%), Gaps = 7/463 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD + + NVVS   +I  + +     EA+  F RM  L  +P E T  SV+ +   L 
Sbjct: 212 RVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLA 271

Query: 123 DLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
               G Q+HA   K    ++++ +G+A++D+Y K   + EA  VF+     N VS TTM+
Sbjct: 272 AFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMV 331

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G  K    + A  +F  +  +++VSWNA+I GY+Q G NEEA+ LF  + RE + P H 
Sbjct: 332 SGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHY 391

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKL------DVFVGNSLISFYAKCGSMEDSL 295
           T    + A+AN+A L +G+  H+  VK   +       D+FVGNSLI  Y KCGS+E+ L
Sbjct: 392 TFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGL 451

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VF+ + E++ V+WN +I GYAQNG G EA+E F++M  +G +P+ VT++G L AC+H G
Sbjct: 452 RVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAG 511

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           LVE+G  YF     E   +   +HY CMVDLL R+G  +EAK+ +  +P  P    W +L
Sbjct: 512 LVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSL 571

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C++H N+ LG++ A +I  +DP     YV+L+N  S  G+W +  ++R+ M+ +G+ 
Sbjct: 572 LSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVV 631

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + PGCSWI+I+S VHVF+  D+ H    EIY++L+  T+ +R+
Sbjct: 632 KQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMRQ 674



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 176/355 (49%), Gaps = 11/355 (3%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  ++     L      + +H    +      VF+ + ++D+Y K   ++ A +VF+   
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMS 86

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             NV S+ ++I  L++    +++  LF  MP ++  SWN+MI G++Q  R EEA++ F+ 
Sbjct: 87  ERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVR 146

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M R+  V N  +    + A + +  L +G   H    K    LDVF+G+ LI FY+KCG 
Sbjct: 147 MHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGL 206

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  VFD + E+N+V+WN +I  Y QNG   EA+E F RM   G +P+ VTL  ++ A
Sbjct: 207 VGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSA 266

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C      ++G    ++    D           +VD+ ++ GR  EA+     +P    + 
Sbjct: 267 CATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVS 326

Query: 411 FWKALLGGCQIHSNVELGEFAARRILA-LDPEDVSSYVMLSNALSVAGKWDNVSN 464
               ++ G    ++V+    AAR + A +  +D+ S+    NAL +AG   N  N
Sbjct: 327 -ETTMVSGYAKSASVK----AARSMFATIKQKDIVSW----NAL-IAGYTQNGEN 371



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 146/329 (44%), Gaps = 63/329 (19%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +P+ +  S  ++I  FA+   +EEA+  F RM   +   ++++FGS + + + L+D
Sbjct: 112 LFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKD 171

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LG Q+H   +K     +VF+GS ++D Y K   +  A RVF+     N          
Sbjct: 172 LKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKN---------- 221

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                VVSWN +I  Y Q G   EA+  F  M   G  P+  TL
Sbjct: 222 ---------------------VVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTL 260

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              + A A +AA   G   HA  VK    + D+ +GN+L+  YAKCG + ++  VFD++ 
Sbjct: 261 ASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320

Query: 303 ERN-------------------------------IVTWNAVICGYAQNGRGEEAIEFFER 331
            RN                               IV+WNA+I GY QNG  EEA+  F  
Sbjct: 321 VRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRM 380

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++   + P   T   LL A  +   +E G
Sbjct: 381 LKRESVCPTHYTFGNLLNASANLADLELG 409



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 132/276 (47%), Gaps = 39/276 (14%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  ++S    +   +F  +   ++VS   +I  + +    EEA+ LF  +   ++ 
Sbjct: 328 TTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVC 387

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL------QSNVFVGSAILDLYIKLSSI 159
           P+ +TFG+++ +S  L DL LG+Q H+   K G       + ++FVG++++D+Y+K  S+
Sbjct: 388 PTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSV 447

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
           EE  RVFE+    + VS+ TMI G                               Y+Q G
Sbjct: 448 EEGLRVFENMVEKDHVSWNTMIIG-------------------------------YAQNG 476

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
              EA+ LF +ML  G  P+H T+   + A ++   +  G+ +     K  G L V    
Sbjct: 477 YGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHY 536

Query: 280 S-LISFYAKCGSMEDSLLVFDKLTER-NIVTWNAVI 313
           + ++    + G +E++  + + + ++ + V W++++
Sbjct: 537 TCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLL 572


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 184/474 (38%), Positives = 287/474 (60%), Gaps = 11/474 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+ +D      +VFDE+ D NVVS  ++I  F +     EA+ +F  ML   + P E T
Sbjct: 200 CGNVND----AQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
             SVI +  +L  + +G+++H    K   L++++ + +A +D+Y K S I+EA  +F+  
Sbjct: 256 LASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              NV++ T+MI G       + A  +F +M  RNVVSWNA+I GY+Q G NEEA++LF 
Sbjct: 316 PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL------DVFVGNSLIS 283
            + RE + P H +    + A A++A L +G   H   +K   K       D+FVGNSLI 
Sbjct: 376 LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG +E+  LVF K+ ER+ V+WNA+I G+AQNG G EA+E F  M  +G +P+ +T
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           ++G+L AC H G VE+G  YFS    +       +HY CMVDLL R+G  +EAK  + ++
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P    W +LL  C++H N+ LG++ A ++L ++P +   YV+LSN  +  GKW++V 
Sbjct: 556 PMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVM 615

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           N+R+ M+++G+T+ PGCSWI+I+   HVF+  D++H    +I+++L     ++R
Sbjct: 616 NVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 155/279 (55%), Gaps = 9/279 (3%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           + +HA   K G  + +F+ + ++D Y K  S+E+  +VF+     N+ ++ +++ GL K 
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
              ++A  LF+ MP R+  +WN+M+ G++Q  R EEA+  F  M +EG V N  +    +
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A + +  +  G   H+   K     DV++G++L+  Y+KCG++ D+  VFD++ +RN+V
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WN++I  + QNG   EA++ F+ M  + + P+ VTL  ++ AC     ++ G     + 
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 368 ----KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
               KL +  +L        VD+ ++  R KEA+ F++D
Sbjct: 280 VKNDKLRNDIILSN----AFVDMYAKCSRIKEAR-FIFD 313



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 162/365 (44%), Gaps = 100/365 (27%)

Query: 51  CGSESDKFSSVHQVFDEVPDLN------VVSATTIIG----------------------- 81
           CGS  D      QVFD++P  N      VV+  T +G                       
Sbjct: 68  CGSLEDG----RQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSM 123

Query: 82  --RFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
              FA+    EEA+  F+ M       +E++F SV+ + + L D+N G Q+H+   K   
Sbjct: 124 VSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPF 183

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
            S+V++GSA++D+Y K  ++ +A RVF++  + NVVS                       
Sbjct: 184 LSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVS----------------------- 220

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
                   WN++I  + Q G   EA+++F  ML   + P+  TL   I A A+++A+ +G
Sbjct: 221 --------WNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272

Query: 260 KSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFD------------------ 299
           +  H   VK   KL  D+ + N+ +  YAKC  ++++  +FD                  
Sbjct: 273 QEVHGRVVKN-DKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYA 331

Query: 300 -------------KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
                        K+ ERN+V+WNA+I GY QNG  EEA+  F  ++   + P   +   
Sbjct: 332 MAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFAN 391

Query: 347 LLWAC 351
           +L AC
Sbjct: 392 ILKAC 396


>gi|326529135|dbj|BAK00961.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 291

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 163/282 (57%), Positives = 209/282 (74%)

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG+ PN    PC + + AN  ALG+ +S HA A+K LGKLDV++GNSL+  YA+CGS+ED
Sbjct: 1   EGVWPNEFAFPCVLTSVANTGALGVARSVHASAIKHLGKLDVYIGNSLVICYARCGSLED 60

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           S+LVF  + ++N+V+WNA+ICGYAQNGRGEEA+   +RM   G++ N VTLLGLL+ CNH
Sbjct: 61  SVLVFASMEQKNVVSWNALICGYAQNGRGEEALAAHKRMIATGLKANNVTLLGLLFGCNH 120

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLV+ GYS F  A+ E P  LKPEHYAC+VDL SR+ RF EAK FL DLPF+PG+GFWK
Sbjct: 121 AGLVDGGYSLFKTAQREQPDTLKPEHYACVVDLFSRAKRFDEAKRFLEDLPFEPGLGFWK 180

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           +++GGC IH N +L E  A+RI ALDPED SSY++LSN     G W++ S IRR +KEKG
Sbjct: 181 SMIGGCLIHWNKDLAESVAKRIHALDPEDTSSYILLSNVYFSVGNWESASMIRRHIKEKG 240

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
           + R+ GCSWI+++ K HVFV GD  H  +DEIY VL  C + 
Sbjct: 241 LKRITGCSWIDVQDKAHVFVNGDSRHPQSDEIYKVLEVCLDN 282



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 31/140 (22%)

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           + P+EF F  V+ S      L + + +HA A K   + +V++G++++  Y +        
Sbjct: 3   VWPNEFAFPCVLTSVANTGALGVARSVHASAIKHLGKLDVYIGNSLVICYAR-------- 54

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                             CG L     ED++ +F  M  +NVVSWNA+I GY+Q GR EE
Sbjct: 55  ------------------CGSL-----EDSVLVFASMEQKNVVSWNALICGYAQNGRGEE 91

Query: 224 AVNLFIEMLREGLVPNHSTL 243
           A+     M+  GL  N+ TL
Sbjct: 92  ALAAHKRMIATGLKANNVTL 111


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/523 (36%), Positives = 305/523 (58%), Gaps = 14/523 (2%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIE--TQKASVQKLETPAIRTDS----------VSCGSE 54
           IC  SLSL  +S LH     +L+   T    +++L    ++T+S           S  + 
Sbjct: 2   IC--SLSLLHVSPLHHRPSTHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAF 59

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           +  FS    +F  +    V    T +  FA+     +AI LF R+   +I P  +T   V
Sbjct: 60  NSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFV 119

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + + + L D+  GK +H +  K+GLQSN+F+ + I+ LY     I  A +VF+     +V
Sbjct: 120 LKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDV 179

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           +++  MI  L+K    E A KLF EMP RNV SW +MIGGY+Q G+++EA++LF+EM   
Sbjct: 180 ITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDA 239

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           GL+PN  T+   ++A A++  L +G+  H  + +   + ++ V N+LI  Y KCG +ED+
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             +FD + ER +V+W+A+I G A +GR E+A+  F +M   G++PN VT +G+L AC+H 
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHM 359

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G+VEKG  YF+    +   + + EHY CMVDL SR+G  +EA EF+ ++P  P    W A
Sbjct: 360 GMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGA 419

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLGGC++H N++L E A R +  LDP +   YV+LSN  + AG+W++V+ +R+ M+++G+
Sbjct: 420 LLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGV 479

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            + PG S I ++  V+ FV GD  H   +EI+       ++++
Sbjct: 480 KKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMK 522


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 182/475 (38%), Positives = 285/475 (60%), Gaps = 11/475 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+ +D      QVFDE+ D NVVS  ++I  + +     EA+ +F  ML   + P E T
Sbjct: 200 CGNVND----AQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVT 255

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
             SVI +  +L  + +G+++HA   K+  L++++ + +A +D+Y K S I+EA  +F+  
Sbjct: 256 LASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              NV++ T+M+ G       + A  +F +M  RNVVSWNA+I GY+Q G NEEA++LF 
Sbjct: 316 PIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL------DVFVGNSLIS 283
            + RE + P H T    + A A++A L +G   H   +K   K       D+FVGNSLI 
Sbjct: 376 LLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG +E+  LVF K+ ER+ V+WNA+I G+AQNG G EA+E F  M  +G +P+ +T
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHIT 495

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           ++G+L AC H G VE+G  YFS    +       +HY CMVDLL R+G  +EAK  + ++
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEM 555

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P    W +LL  C++H N+ LG++ A ++  ++  +   YV+LSN  +  GKW +  
Sbjct: 556 PVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAM 615

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           N+R+ M+++G+T+ PGCSWI+I    HVF+  D++H    +I+++L     ++R+
Sbjct: 616 NVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQIHSLLDILIAEMRQ 670



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 155/277 (55%), Gaps = 9/277 (3%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +HA   K G  + VF+ + ++D Y K  S+E+  ++F+     NV ++ +++ GL K   
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            ++A  LF+ MP R+  +WN+M+ G++Q  R EEA+  F  M +EG V N  T    + A
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            + +  +  G   H+   K     DV++G++L+  Y+KCG++ D+  VFD++ +RN+V+W
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-- 367
           N++I  Y QNG   EA++ F+ M  + + P+ VTL  ++ AC     ++ G    ++   
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281

Query: 368 --KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
             KL +  +L        VD+ ++  R KEA+ F++D
Sbjct: 282 MDKLRNDIILSN----AFVDMYAKCSRIKEAR-FIFD 313



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 155/321 (48%), Gaps = 65/321 (20%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +P+ +  +  +++  FA+    EEA+Y F+ M       +E+TF S + + + L D
Sbjct: 108 LFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLND 167

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +N G Q+H+   K    S+V++GSA++D+Y K  ++ +A +VF++  + NVVS+      
Sbjct: 168 MNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW------ 221

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                    N++I  Y Q G   EA+ +F  ML   + P+  TL
Sbjct: 222 -------------------------NSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTL 256

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFD-- 299
              I A A+++A+ +G+  HA  VK + KL  D+ + N+ +  YAKC  ++++  +FD  
Sbjct: 257 ASVISACASLSAIKVGQEVHARVVK-MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query: 300 -----------------------------KLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
                                        K+ ERN+V+WNA+I GY QNG  EEA+  F 
Sbjct: 316 PIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query: 331 RMRINGIRPNGVTLLGLLWAC 351
            ++   + P   T   +L AC
Sbjct: 376 LLKRESVCPTHYTFANILKAC 396


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 185/477 (38%), Positives = 290/477 (60%), Gaps = 37/477 (7%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T    CGS  D      Q F+   D N ++ + +I  +A+    ++A+ LFS M L 
Sbjct: 249 ALVTMYAKCGSLDDAL----QTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLS 304

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            IRPSEFTF  VI + + L     GKQ+H +  K+G +S ++V +A++D+Y K SSI +A
Sbjct: 305 GIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDA 364

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            + F+    P++V                                W +MIGGY Q G NE
Sbjct: 365 RKGFDYLQEPDIVL-------------------------------WTSMIGGYVQNGENE 393

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A++L+  M  EG++PN  T+   + A +++AAL  GK  HA  VK+   L+V +G++L 
Sbjct: 394 DALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALS 453

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + YAKCG ++D  LVF ++  R++++WNA+I G +QNG G+EA+E FE M++ G +P+ V
Sbjct: 454 TMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYV 513

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLY 401
           T + +L AC+H GLVE+G+ YF +   ++ GM  + EHYACMVD+LSR+G+ KEA EF  
Sbjct: 514 TFVNILSACSHMGLVERGWGYF-RMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTE 572

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
               D G+  W+ +LG C+ + N ELG +A  +++ L  ++ S+YV+LS+  S  G+W++
Sbjct: 573 SATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWED 632

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           V  +RR MK +G+++ PGCSWIE+KS VHVFV  D+ H    +I+  LR  ++Q+++
Sbjct: 633 VERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKD 689



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 130/432 (30%), Positives = 202/432 (46%), Gaps = 68/432 (15%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +P+ N VS  T+I  +A Q    EA+ LF  M       +EF F SV+ + T  E
Sbjct: 164 KVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPE 223

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +N GKQ+H  A K GL S V VG+A++ +Y K  S+++A + FE + + N ++++ MI 
Sbjct: 224 LVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMIT 283

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G                               Y+Q+G +++A+ LF  M   G+ P+  T
Sbjct: 284 G-------------------------------YAQSGDSDKALKLFSSMHLSGIRPSEFT 312

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               I A +++ A   GK  H   +K   +  ++V  +L+  YAKC S+ D+   FD L 
Sbjct: 313 FVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ 372

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E +IV W ++I GY QNG  E+A+  + RM + GI PN +T+  +L AC+    +E+G  
Sbjct: 373 EPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQ 432

Query: 363 YFSQA-----KLEDP------------GMLK---------PEH----YACMVDLLSRSGR 392
             ++       LE P            G LK         P      +  M+  LS++G 
Sbjct: 433 IHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGC 492

Query: 393 FKEAKEFLYDLPFD---PGIGFWKALLGGCQIHSNVELGEFAARRI---LALDPEDVSSY 446
            KEA E   ++  +   P    +  +L  C     VE G    R +     +DP  V  Y
Sbjct: 493 GKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPR-VEHY 551

Query: 447 VMLSNALSVAGK 458
             + + LS AGK
Sbjct: 552 ACMVDILSRAGK 563



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 181/361 (50%), Gaps = 43/361 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQ--HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           VF+ + + +VVS   II  +++         + LF RM   N  P+  TF  V  +++ L
Sbjct: 62  VFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTL 121

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D   G+  HA A K+    +VFVGS+++++Y K     EA +VF+     N VS+ TMI
Sbjct: 122 VDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMI 181

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G   ++   +AL LF+ M                   R EE  N F+            
Sbjct: 182 SGYASQKLAAEALGLFRLMR------------------REEEGENEFV------------ 211

Query: 242 TLPCAIIAAANIAAL-GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
               ++++A  +  L   GK  H  AVK      V VGN+L++ YAKCGS++D+L  F+ 
Sbjct: 212 --FTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFET 269

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            +++N +TW+A+I GYAQ+G  ++A++ F  M ++GIRP+  T +G++ AC+  G   +G
Sbjct: 270 SSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEG 329

Query: 361 ---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
              + Y  +   E    +       +VD+ ++     +A++  +D   +P I  W +++G
Sbjct: 330 KQVHDYLLKLGFESQIYV----MTALVDMYAKCSSIVDARKG-FDYLQEPDIVLWTSMIG 384

Query: 418 G 418
           G
Sbjct: 385 G 385



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 110/257 (42%), Gaps = 34/257 (13%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           PS  +F + +   T    L  GK LHA   K    S V++ +++++LY K   + EA  V
Sbjct: 4   PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFV 62

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN--EE 223
           FE   N                               ++VVSWN +I GYSQ G +    
Sbjct: 63  FERIQN-------------------------------KDVVSWNCIINGYSQHGPSGSSH 91

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            + LF  M  E   PN  T      AA+ +     G+  HA A+K     DVFVG+SL++
Sbjct: 92  VMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMN 151

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y K G   ++  VFD + ERN V+W  +I GYA      EA+  F  MR      N   
Sbjct: 152 MYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFV 211

Query: 344 LLGLLWACNHTGLVEKG 360
              +L A     LV  G
Sbjct: 212 FTSVLSALTLPELVNNG 228



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
           +P++ +   A++   +  +L  GK+ HA  +K      V++ NSL++ YAKC  + ++  
Sbjct: 3   LPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKF 61

Query: 297 VFDKLTERNIVTWNAVICGYAQNGR--GEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           VF+++  +++V+WN +I GY+Q+G       +E F+RMR     PN  T  G+  A +
Sbjct: 62  VFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAS 119


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/492 (39%), Positives = 294/492 (59%), Gaps = 37/492 (7%)

Query: 29  IETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHH 88
           +E  KA ++ LE P + T  V   ++    S    +FD++P+ NVV+ T +I  +A+Q  
Sbjct: 221 MEIAKAGLE-LE-PRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148
            + A+ L  +M    + P++ T+ S++   T    L  GK++H +  + G    ++V +A
Sbjct: 279 VDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNA 338

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           ++ +Y K                          CG LK  R     KLF ++PHR+VV+W
Sbjct: 339 LITMYCK--------------------------CGGLKEAR-----KLFGDLPHRDVVTW 367

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
            AM+ GY+Q G ++EA++LF  M ++G+ P+  T   A+ + ++ A L  GKS H   V 
Sbjct: 368 TAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVH 427

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
               LDV++ ++L+S YAKCGSM+D+ LVF++++ERN+V W A+I G AQ+GR  EA+E+
Sbjct: 428 AGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEY 487

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDL 386
           FE+M+  GI+P+ VT   +L AC H GLVE+G  +F    L D G +KP  EHY+C VDL
Sbjct: 488 FEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYL-DYG-IKPMVEHYSCFVDL 545

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446
           L R+G  +EA+  +  +PF PG   W ALL  C+IHS+VE GE AA  +L LDP+D  +Y
Sbjct: 546 LGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAY 605

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           V LSN  + AG++++   +R+ M+++ + + PG SWIE+  KVHVF   D++H    EIY
Sbjct: 606 VALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIY 665

Query: 507 AVLRSCTEQIRE 518
           A L   TEQI+E
Sbjct: 666 AELGKLTEQIKE 677



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 153/339 (45%), Gaps = 39/339 (11%)

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142
             KQ   +EA+ + + M+L   R     F  ++     L  L  G+++HA   K G+Q N
Sbjct: 71  LCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 130

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
            ++ + +L +Y K  S+ +A RVF+   +                               
Sbjct: 131 RYLENTLLSMYAKCGSLTDARRVFDGIRD------------------------------- 159

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           RN+VSW AMI  +    +N EA   +  M   G  P+  T    + A  N   L +G+  
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H    K   +L+  VG SL+  YAKCG +  + ++FDKL E+N+VTW  +I GYAQ G+ 
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQV 279

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEH 379
           + A+E  E+M+   + PN +T   +L  C     +E G   + Y  Q+       +    
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWV---- 335

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              ++ +  + G  KEA++   DLP    +  W A++ G
Sbjct: 336 VNALITMYCKCGGLKEARKLFGDLPHRDVVT-WTAMVTG 373


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  357 bits (916), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 286/486 (58%), Gaps = 9/486 (1%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T  V   ++ ++     +VFD +P+ N+VS  ++I  + +    +EA+ LF RM+   
Sbjct: 184 IGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDG 243

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEA 162
             P E T  SV+ +   L     G+Q+H    K    + ++ + +A++D+Y K     EA
Sbjct: 244 FVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEA 303

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF+     +VVS T+MI G  K     DA  +F +M  +NVV+WN +I  Y+     E
Sbjct: 304 KCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEE 363

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD------VF 276
           EA+ LF+ + RE + P H T    + A AN+A L +G+  H   +K   + D      VF
Sbjct: 364 EALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVF 423

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           VGNSL+  Y K GS+ D   VF+++  R+ V+WNA+I GYAQNGR ++A+  FERM  + 
Sbjct: 424 VGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSN 483

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKE 395
            RP+ VT++G+L AC H+GLV++G  YF Q+  ED G++   +HY CM+DLL R+G  KE
Sbjct: 484 ERPDSVTMIGVLSACGHSGLVKEGRRYF-QSMTEDHGIIPTRDHYTCMIDLLGRAGHLKE 542

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455
            +E + ++P +P    W +LLG C++H N+++GE+AA ++  LDP++   YV+LSN  + 
Sbjct: 543 VEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAE 602

Query: 456 AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
            GKW +V  +RR MK +G+++ PGCSWIEI  KV+VF+  D  H   +EI+  LR    Q
Sbjct: 603 LGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDNIHPCRNEIHDTLRIIQMQ 662

Query: 516 IREFEL 521
           +    +
Sbjct: 663 MSRMSI 668



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 134/262 (51%), Gaps = 14/262 (5%)

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
            F+ + +L  Y +L S+ +A RVF+   + N  SY  ++    +  R +DAL LF  +P 
Sbjct: 50  TFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPD 109

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
            +  S+NA++   +Q GR  +A+     M  +  V N  +   A+ A A+  A   G+  
Sbjct: 110 PDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQV 169

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           HA   K     DV++G +L+  YAKC   E++  VFD + ERNIV+WN++I  Y QNG  
Sbjct: 170 HALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPV 229

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA- 381
           +EA+  F RM  +G  P+ VTL  ++ AC       +G    ++       M+K + +  
Sbjct: 230 DEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTR-------MVKSDRFRE 282

Query: 382 ------CMVDLLSRSGRFKEAK 397
                  +VD+ ++ GR  EAK
Sbjct: 283 DMVLNNALVDMYAKCGRTWEAK 304



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 63/329 (19%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +PD +  S   ++   A+     +A+   + M   +   + ++F S + +  + + 
Sbjct: 103 LFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKA 162

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+HA  TK    S+V++G+A++D+Y K    EEA +VF+     N+VS+      
Sbjct: 163 SRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSW------ 216

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                    N++I  Y Q G  +EA+ LF+ M+++G VP+  TL
Sbjct: 217 -------------------------NSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTL 251

Query: 244 PCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              + A A +AA   G+  H   VK    + D+ + N+L+  YAKCG   ++  VFD++ 
Sbjct: 252 ASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMA 311

Query: 303 -------------------------------ERNIVTWNAVICGYAQNGRGEEAIEFFER 331
                                          E+N+V WN +I  YA N   EEA+  F R
Sbjct: 312 IRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVR 371

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++   + P   T   +L AC +   ++ G
Sbjct: 372 LKRESVWPTHYTYGNVLNACANLANLQLG 400


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 179/462 (38%), Positives = 278/462 (60%), Gaps = 9/462 (1%)

Query: 63   QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            +VF+ +P+ N+VS  ++I  + +     EA+ LF  M+     P E T  SV+ +   L 
Sbjct: 948  RVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLA 1007

Query: 123  DLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
                G+Q+HA   K    + ++ + +A++D+Y K      A  VF+   + +VVS T++I
Sbjct: 1008 ADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLI 1067

Query: 182  CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
             G  +    EDA  +F +M  +NV++WN +I  Y+Q G  EEA+ LF+ + RE + P H 
Sbjct: 1068 TGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHY 1127

Query: 242  TLPCAIIAAANIAALGMGKSFHACAVK------FLGKLDVFVGNSLISFYAKCGSMEDSL 295
            T    + A  N+A L +G+  H   +K      F  + DVFVGNSL+  Y K GS++D  
Sbjct: 1128 TYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 1187

Query: 296  LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
             VF+++  R+ V+WNA+I G+AQNGR ++A+  FERM  +   P+ VT++G+L AC H+G
Sbjct: 1188 KVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSG 1247

Query: 356  LVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            LVE+G  YF ++  ED G++  + HY CM+DLL R+G  KE +E + ++  +P    W +
Sbjct: 1248 LVEEGRRYF-RSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWAS 1306

Query: 415  LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
            LLG C++H NVE+GE+AA ++  LDP +   YV+LSN  +  GKW +V  +R  MK +G+
Sbjct: 1307 LLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGV 1366

Query: 475  TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            ++ PGCSWIEI  KV VF+  D  H   +EI+A+LR    Q+
Sbjct: 1367 SKQPGCSWIEIGRKVSVFLARDNGHPCKNEIHAILRIIQMQM 1408



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 201/400 (50%), Gaps = 35/400 (8%)

Query: 41  TPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           + +I +   SCG    + +   +VF+ + + N+VS   ++  + +      A+ LF +M 
Sbjct: 321 STSIVSGLASCG----RIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMR 376

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
                    T GSV+ + T + D+  G+++HA+A K G  S+  + +A++ +Y K     
Sbjct: 377 QETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSK----- 431

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                CG L   R  + L LF+    R+  SWN++I GY +   
Sbjct: 432 ---------------------CGCL---RSAERLLLFEMGSERDSYSWNSLISGYERHSM 467

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
           +E A+    +M  E + PN ST   A+ A ANI  L  G   HA  ++   ++D  + + 
Sbjct: 468 SEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSV 526

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI  Y KC   + S+ +F+    R+++ WN++I G A +G+GE  ++ F+ M+  GI+ +
Sbjct: 527 LIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKAD 586

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            VT LG L +C   G V  G SYF+   +++  + + EHY CM++LL + G   E ++F+
Sbjct: 587 SVTFLGALVSCISEGHVRLGRSYFT-LMMDESIIPRIEHYECMIELLGKHGCMVELEDFV 645

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP 440
             +PF+P    W  +   C+ + N +LGE AA+ I   +P
Sbjct: 646 EHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNP 685



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 188/376 (50%), Gaps = 11/376 (2%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +   + FD++ + N +S   I+ R+      + A+ +F RML   +RP  +T    + +
Sbjct: 202 LADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLA 261

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                 L  G+ +HA+  + G + +V V S+++D+Y K  +++ A  +F      ++V  
Sbjct: 262 CRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMS 321

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T+++ GL    R  DA ++F+ M  RN+VSWNAM+ GY ++     A+ LF +M +E   
Sbjct: 322 TSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETRE 381

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS--L 295
            +  TL   + A   I  +G G+  HA A+K        + N+L+  Y+KCG +  +  L
Sbjct: 382 FDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERL 441

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           L+F+  +ER+  +WN++I GY ++   E A+    +M+ + + PN  T    L AC +  
Sbjct: 442 LLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQ-SEVTPNQSTFSSALAACANIF 500

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           L+++G   ++Y  +   E   +L+    + ++D+  +  +F  +       P    I  W
Sbjct: 501 LLKQGMQIHAYMIRKGYEIDDILR----SVLIDMYCKCRQFDYSIRIFEARPSRDVI-LW 555

Query: 413 KALLGGCQIHSNVELG 428
            +++ GC      E G
Sbjct: 556 NSMIFGCAYSGKGEYG 571



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 185/420 (44%), Gaps = 70/420 (16%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
            +CGS +D      ++FD +P  +  S   II   ++  H  EA+ LFS M  L IRP +
Sbjct: 96  AACGSVAD----ARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKD 151

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  SV+       DL   +QLH    K   QSNV +G+A++D+Y     + +A R F+D
Sbjct: 152 ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDD 211

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
              P                               N +SWN ++  Y   G  + AV++F
Sbjct: 212 ILEP-------------------------------NAISWNVIVRRYHLAGMGDMAVDMF 240

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             ML  G+ P   T+  A++A  +  AL  G+  HA  ++   +  V V +S++  YAKC
Sbjct: 241 FRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKC 300

Query: 289 GSME-------------------------------DSLLVFDKLTERNIVTWNAVICGYA 317
           G+M+                               D+  VF+ + ERN+V+WNA++ GY 
Sbjct: 301 GAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYI 360

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-K 376
           ++     A+  F++MR      + +TL  +L AC  TG+++ G      A     G    
Sbjct: 361 RSMDLTGALLLFQQMRQETREFDAITLGSVLSAC--TGILDIGKGEEVHAFAIKCGFFSS 418

Query: 377 PEHYACMVDLLSRSGRFKEAKE-FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
           P     +V + S+ G  + A+   L+++  +     W +L+ G + HS  E   +A  ++
Sbjct: 419 PILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM 478



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 156/375 (41%), Gaps = 94/375 (25%)

Query: 49   VSCGSESDKFSSVHQVFDE-------------------------------VPDLNVVSAT 77
            VS  +   +     +VFDE                               +PD +  S  
Sbjct: 802  VSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSYN 861

Query: 78   TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV 137
             +I   A+     +A+   + M   +   + ++F S + +  A +D   G Q+HA  +K 
Sbjct: 862  AVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKS 921

Query: 138  GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
                +V++GSA+LD+Y K    EEA RVFE     N+V                      
Sbjct: 922  PHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIV---------------------- 959

Query: 198  QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
                     SWN++I  Y Q G   EA+ LF+ M++ G VP+  TL   + A A +AA  
Sbjct: 960  ---------SWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADR 1010

Query: 258  MGKSFHACAVKF-LGKLDVFVGNSLISFYAKCG--------------------------- 289
             G+  HA  VK    + D+ + N+L+  YAKCG                           
Sbjct: 1011 EGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGY 1070

Query: 290  ----SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
                ++ED+ +VF ++ E+N++ WN +I  YAQNG  EEA+  F R++   + P   T  
Sbjct: 1071 ARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYG 1130

Query: 346  GLLWACNHTGLVEKG 360
             +L AC +   ++ G
Sbjct: 1131 NVLNACGNVADLQLG 1145



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 136/286 (47%), Gaps = 1/286 (0%)

Query: 141  SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
            +  F+ + ++  Y +L  + +A RVF++  +PN  SY  ++    +  R  DA  LF  +
Sbjct: 793  AETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAI 852

Query: 201  PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
            P  +  S+NA+I   +Q  R  +A+     M  +  V N  +   A+ A A       G 
Sbjct: 853  PDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGV 912

Query: 261  SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
              HA   K     DV++G++L+  YAKC   E++  VF+ + ERNIV+WN++I  Y QNG
Sbjct: 913  QVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNG 972

Query: 321  RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
               EA+  F  M   G  P+ VTL  ++ AC       +G    ++    D         
Sbjct: 973  PVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLS 1032

Query: 381  ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
              +VD+ ++ GR + A+  ++D      +    +L+ G    +NVE
Sbjct: 1033 NALVDMYAKCGRTRAAR-CVFDRMASRSVVSETSLITGYARSANVE 1077



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 11/206 (5%)

Query: 53   SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
            + S        VF ++ + NV++   +I  +A+    EEA+ LF R+   ++ P+ +T+G
Sbjct: 1071 ARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYG 1130

Query: 113  SVIPSSTALEDLNLGKQLHAWATKVGL------QSNVFVGSAILDLYIKLSSIEEATRVF 166
            +V+ +   + DL LG+Q H    K G       +S+VFVG++++D+Y+K  SI++  +VF
Sbjct: 1131 NVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVF 1190

Query: 167  EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNE 222
            E     + VS+  MI G  +  R +DAL LF+ M       + V+   ++     +G  E
Sbjct: 1191 ERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVE 1250

Query: 223  EAVNLFIEMLRE-GLVPNHSTLPCAI 247
            E    F  M  + G++P+     C I
Sbjct: 1251 EGRRYFRSMTEDHGIIPSQDHYTCMI 1276


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 175/459 (38%), Positives = 277/459 (60%), Gaps = 35/459 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +V DE+P+ NVVS T +I  ++++ +  EA++LF  ML+    P+EFTF +V+ S T+  
Sbjct: 66  RVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSS 125

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
              LG+Q+H+   K   +S++FVGS++LD+Y K   I EA RVF+               
Sbjct: 126 GFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDG-------------- 171

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            +P R+VVS  A+I GY+Q G +EEA++LF  + REG+  N+ T
Sbjct: 172 -----------------LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVT 214

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A + +AAL  G+  H+  ++      V + NSLI  Y+KCGS+  S  +FD + 
Sbjct: 215 YASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 274

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGY 361
           ER +++WNA++ GY+++G G EA+E F+ M+  N ++P+ VT L +L  C+H G+ ++G 
Sbjct: 275 ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGL 334

Query: 362 SYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
             F +   +  G  +PE  HY C+VDL  R+GR +EA EF+  +PF+P    W +LLG C
Sbjct: 335 EIFYEMVNQKDG-FEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGAC 393

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H NV +GEF ARR+L ++ E+  +YV+LSN  + AG+WD+V  +R  MKEK + + PG
Sbjct: 394 RVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPG 453

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            SWIE+   +H F   DR+H   +E++A +R  + +I+E
Sbjct: 454 RSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKE 492



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 148/282 (52%), Gaps = 12/282 (4%)

Query: 148 AILDLYIKLSSIEEATRV----FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
           ++L   I  ++I E  RV     +  + P V   T +I    K     DA ++  EMP R
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           NVVSW AMI GYSQ G   EA++LF+EML  G  PN  T    + +  + +   +G+  H
Sbjct: 75  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 134

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
           +  +K   +  +FVG+SL+  YAK G + ++  VFD L ER++V+  A+I GYAQ G  E
Sbjct: 135 SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE 194

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHY 380
           EA++ F R++  G+R N VT   +L A +    ++ G   +S+  +AKL    +L+    
Sbjct: 195 EALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ---- 250

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
             ++D+ S+ G    ++     +P    I  W A+L G   H
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMPERTVIS-WNAMLVGYSKH 291


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 188/523 (35%), Positives = 300/523 (57%), Gaps = 20/523 (3%)

Query: 5   LCICRSSLSLNKLSKLHSLA--PNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH 62
           L  C     L   S++HSL    NYL +    S       A+      CG    +     
Sbjct: 158 LSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGS-------ALVDMYSKCG----RVEYAQ 206

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VFDE+   + VS  ++I  + +    +EA+ +F  M+   + P E T  SV+ +   + 
Sbjct: 207 SVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATIS 266

Query: 123 DLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            +  G+Q+HA   K    ++++ +G+A+LD+Y K + I EA  +F+     +VVS T+M+
Sbjct: 267 AIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMV 326

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G  K  + + A  +F  M  ++V++WNA+I G +Q G NEEA+ LF  + RE + P H 
Sbjct: 327 SGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHY 386

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKL------DVFVGNSLISFYAKCGSMEDSL 295
           T    + A AN+A L +G+  H+  +K   +       DVFVGNSLI  Y KCGS+E+  
Sbjct: 387 TFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGC 446

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VF  + E++ V+WNA+I GYAQNG G +A+E F +M  +G  P+ VT++G+L AC+H G
Sbjct: 447 RVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAG 506

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           L+++G  YF     +   M   +HY CMVDLL R+G  +EAK  + ++   P    W +L
Sbjct: 507 LLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSL 566

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C++H N++LGE+  +++L +DPE+   YV+LSN  +    W NV  +R+ M+++G+ 
Sbjct: 567 LAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVV 626

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + PGCSWIEI+ +++VF+  D+ H    EIY VLR+  +Q+++
Sbjct: 627 KQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQMKQ 669



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 148/276 (53%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++HA   K    S  F+ + ++D+Y K   ++ A ++F+     N+ S+ ++IC   K  
Sbjct: 40  RVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSG 99

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
             +DA+ +F++MP  +  SWN+MI G+ Q GR +EA+  F +M   G + N  +   A+ 
Sbjct: 100 FLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALS 159

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A A +  L +G   H+   +     DV++G++L+  Y+KCG +E +  VFD++T R+ V+
Sbjct: 160 ACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVS 219

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           WN++I  Y QNG  +EA++ F  M   G+ P+ VTL  ++ AC     +++G    ++  
Sbjct: 220 WNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVV 279

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
             D           ++D+ ++  R  EA+     +P
Sbjct: 280 KCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMP 315



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 180/421 (42%), Gaps = 103/421 (24%)

Query: 3   QLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH 62
           +LL  C  S S    S++H+     +I++  AS   ++   I      CG          
Sbjct: 24  KLLNQCARSRSARDTSRVHAC----IIKSPFASETFIQNRLIDVYG-KCGC----VDVAR 74

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN------------------- 103
           ++FD + + N+ S  +II  F K    ++A+++F +M  ++                   
Sbjct: 75  KLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDE 134

Query: 104 ------------IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
                          +E++FGS + +   L+DL LG Q+H+   +    S+V++GSA++D
Sbjct: 135 ALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVD 194

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
           +Y K   +E A  VF++    + VS+ ++I    +    ++ALK                
Sbjct: 195 MYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALK---------------- 238

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
                          +F+EM++ G+ P+  TL   + A A I+A+  G+  HA  VK   
Sbjct: 239 ---------------IFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDE 283

Query: 272 -KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV----------------------- 307
            + D+ +GN+L+  YAKC  + ++ ++FD +  R++V                       
Sbjct: 284 FRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFS 343

Query: 308 --------TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
                   TWNA+I G  QNG  EEA+  F  ++   + P   T   LL AC +   ++ 
Sbjct: 344 NMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQL 403

Query: 360 G 360
           G
Sbjct: 404 G 404


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 175/459 (38%), Positives = 277/459 (60%), Gaps = 35/459 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +V DE+P+ NVVS T +I  ++++ +  EA++LF  ML+    P+EFTF +V+ S T+  
Sbjct: 533 RVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSS 592

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
              LG+Q+H+   K   +S++FVGS++LD+Y K   I EA RVF+               
Sbjct: 593 GFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDG-------------- 638

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            +P R+VVS  A+I GY+Q G +EEA++LF  + REG+  N+ T
Sbjct: 639 -----------------LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVT 681

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A + +AAL  G+  H+  ++      V + NSLI  Y+KCGS+  S  +FD + 
Sbjct: 682 YASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP 741

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGY 361
           ER +++WNA++ GY+++G G EA+E F+ M+  N ++P+ VT L +L  C+H G+ ++G 
Sbjct: 742 ERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGL 801

Query: 362 SYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
             F +   +  G  +PE  HY C+VDL  R+GR +EA EF+  +PF+P    W +LLG C
Sbjct: 802 EIFYEMVNQKDG-FEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGAC 860

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H NV +GEF ARR+L ++ E+  +YV+LSN  + AG+WD+V  +R  MKEK + + PG
Sbjct: 861 RVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPG 920

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            SWIE+   +H F   DR+H   +E++A +R  + +I+E
Sbjct: 921 RSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKE 959



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 165/321 (51%), Gaps = 16/321 (4%)

Query: 113 SVIPS-STALEDLNLGKQLHAWATKVGLQS--NVFVG-SAILDLYIKLSSIEEATRV--- 165
           S  P+ S  L+ L   +QL     ++G+Q     F G  ++L   I  ++I E  RV   
Sbjct: 443 STFPANSPDLKTLCSNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAH 502

Query: 166 -FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
             +  + P V   T +I    K     DA ++  EMP RNVVSW AMI GYSQ G   EA
Sbjct: 503 MIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEA 562

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           ++LF+EML  G  PN  T    + +  + +   +G+  H+  +K   +  +FVG+SL+  
Sbjct: 563 LHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDM 622

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YAK G + ++  VFD L ER++V+  A+I GYAQ G  EEA++ F R++  G+R N VT 
Sbjct: 623 YAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTY 682

Query: 345 LGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
             +L A +    ++ G   +S+  +AKL    +L+      ++D+ S+ G    ++    
Sbjct: 683 ASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS----LIDMYSKCGSLTYSRRIFD 738

Query: 402 DLPFDPGIGFWKALLGGCQIH 422
            +P    I  W A+L G   H
Sbjct: 739 SMPERTVIS-WNAMLVGYSKH 758


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/522 (36%), Positives = 292/522 (55%), Gaps = 14/522 (2%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + LL  C +  +LN+  ++HS      +ET       L T   + +SV            
Sbjct: 262 VSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQ---------EA 312

Query: 62  HQVFDEVPDLNVVSATTIIGRFAK-----QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
            ++FD +   +V+S + +I  +A+     +   +E   L  RM    + P++ TF S++ 
Sbjct: 313 REIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILR 372

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           + TA   L  G+Q+HA  +KVG + +  + +AI ++Y K  SI EA +VF    N NVV+
Sbjct: 373 ACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVA 432

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +T+ +   +K      A K+F EMP RNVVSWN MI GY+Q G   +   L   M  EG 
Sbjct: 433 WTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGF 492

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            P+  T+   + A   +A L  GK  HA AVK   + D  V  SLI  Y+KCG + ++  
Sbjct: 493 QPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEART 552

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VFDK++ R+ V WNA++ GY Q+G G EA++ F+RM    + PN +TL  ++ AC+  GL
Sbjct: 553 VFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGL 612

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V++G   F   + +     + +HY CMVDLL R+GR +EA+EF+  +P +P I  W ALL
Sbjct: 613 VQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALL 672

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C+ H+NV+L E AA  IL L+P   S Y+ LSN  + AG+WD+ + +RR M ++G+ +
Sbjct: 673 GACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKK 732

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
             G S IEI  ++H FV  D  H   D I+A L + T++++E
Sbjct: 733 DRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKE 774



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 130/506 (25%), Positives = 225/506 (44%), Gaps = 77/506 (15%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + +L  C +   L K  K+H++     +ET           A+ T  ++  S+  + S  
Sbjct: 161 LSILKACNNYSILEKGRKIHTIVKAMGMETD---------VAVATALITMYSKCGEISVA 211

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VF ++ + NVVS T II   A+     EA  L+ +ML   I P+  TF S++ S    
Sbjct: 212 CEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTP 271

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           E LN G+++H+  ++ GL++++ V +A++ +Y K +S++EA  +F+     +V+S++ MI
Sbjct: 272 EALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMI 331

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G  +                           GY      +E   L   M REG+ PN  
Sbjct: 332 AGYAQ--------------------------SGYKDKESIDEVFQLLERMRREGVFPNKV 365

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A     AL  G+  HA   K   +LD  +  ++ + YAKCGS+ ++  VF K+
Sbjct: 366 TFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKM 425

Query: 302 TE-------------------------------RNIVTWNAVICGYAQNGRGEEAIEFFE 330
                                            RN+V+WN +I GYAQNG   +  E   
Sbjct: 426 ANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLS 485

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA---KLEDPGMLKPEHYACMVDLL 387
            M+  G +P+ VT++ +L AC     +E+G    ++A    LE   ++       ++ + 
Sbjct: 486 SMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATS----LIGMY 541

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA--LDPEDVSS 445
           S+ G+  EA+  ++D   +     W A+L G   H +        +R+L   + P +++ 
Sbjct: 542 SKCGQVAEART-VFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITL 600

Query: 446 YVMLSNALSVAGKWDNVSNIRREMKE 471
             ++S A S AG       I R M+E
Sbjct: 601 TAVIS-ACSRAGLVQEGREIFRMMQE 625



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 179/370 (48%), Gaps = 40/370 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ +  +S  QVF  +   +VV+ +++I  +A  +H  +A   F RM   NI P+  TF 
Sbjct: 102 SKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFL 161

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ +      L  G+++H     +G++++V V +A++ +Y K   I  A  VF      
Sbjct: 162 SILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTER 221

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           NVVS+T +I    +  +  +A +L++                               +ML
Sbjct: 222 NVVSWTAIIQANAQHRKLNEAFELYE-------------------------------QML 250

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           + G+ PN  T    + +     AL  G+  H+   +   + D+ V N+LI+ Y KC S++
Sbjct: 251 QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQ 310

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRG-----EEAIEFFERMRINGIRPNGVTLLGL 347
           ++  +FD++++R++++W+A+I GYAQ+G       +E  +  ERMR  G+ PN VT + +
Sbjct: 311 EAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSI 370

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           L AC   G +E+G      A+L   G  L       + ++ ++ G   EA++    +  +
Sbjct: 371 LRACTAHGALEQGRQI--HAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMA-N 427

Query: 407 PGIGFWKALL 416
             +  W + L
Sbjct: 428 KNVVAWTSFL 437



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 164/347 (47%), Gaps = 49/347 (14%)

Query: 80  IGRFAKQHHYEEAIYLF----SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWAT 135
           + R  K     EAI L      R LL+N      T+G VI           GK +H    
Sbjct: 28  VWRLCKAGRLREAIQLLGIIKQRGLLVNSN----TYGCVIEHCAKARRFEDGKMVHKQLD 83

Query: 136 KVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALK 195
           ++G++ ++++G+++++ Y K          FED  +                     A +
Sbjct: 84  ELGVEIDIYLGNSLINFYSK----------FEDVAS---------------------AEQ 112

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
           +F+ M  R+VV+W++MI  Y+      +A + F  M    + PN  T    + A  N + 
Sbjct: 113 VFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSI 172

Query: 256 LGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
           L  G+  H   VK +G + DV V  +LI+ Y+KCG +  +  VF K+TERN+V+W A+I 
Sbjct: 173 LEKGRKIHTI-VKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQ 231

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLED 371
             AQ+ +  EA E +E+M   GI PN VT + LL +CN    + +G   +S+ S+  LE 
Sbjct: 232 ANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLET 291

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             ++       ++ +  +    +EA+E ++D      +  W A++ G
Sbjct: 292 DMIVAN----ALITMYCKCNSVQEARE-IFDRMSKRDVISWSAMIAG 333


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 163/419 (38%), Positives = 265/419 (63%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M+   ++P++FT  +V+ +  ++  L  GKQ H +  K+G +S+V V +A++ +Y +  S
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           +E+A  VF+     +  ++  MI G  +    + ALKLF EM  R+VVSW A+I GY+Q 
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G  +E++N+F +M + G+  +   +   + A A++AAL +G+ FHA  V+    LD+ VG
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           ++L+  YAK GSMED+  VFDK+ +RN V+WN++I G AQ+GRG +A+  FE+M   GI+
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           PN ++ +G+L AC+HTGLV +G  YF+        +    HY CM+DLL R+G   EA+ 
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
           F+  +P +P +  W ALLG C+IH N EL +  A  +L ++ +    YV+LSN  + AG+
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           WD+ + +R+ MK++G+ + PG SWIE+K+ +H FV G+ +H    EI+  L S + +++
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMK 419



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 105/190 (55%), Gaps = 5/190 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F E+ + +VVS T +I  +A+  + +E++ +F++M    ++   F  GSV+ +   L 
Sbjct: 97  KLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLA 156

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LG+Q HA+  + G   ++ VGSA++D+Y K  S+E+A +VF+     N VS+ ++I 
Sbjct: 157 ALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIIT 216

Query: 183 GLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLV 237
           G  +  R  DA+ LF++M       N +S+  ++   S TG   E    F  M +  G+V
Sbjct: 217 GCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIV 276

Query: 238 PNHSTLPCAI 247
           P+ S   C I
Sbjct: 277 PDVSHYTCMI 286


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 171/455 (37%), Positives = 281/455 (61%), Gaps = 7/455 (1%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           V   NV S  ++I   A+     EA+  FS M  L+++P+  TF   I S +AL DL+ G
Sbjct: 36  VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 95

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +Q H  A   G + ++FV SA++D+Y K   + +A  +F++  + N+VS+T+MI G ++ 
Sbjct: 96  RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP-NHSTLPCA 246
           +    AL++F  M  R+V+SWN++I  Y+Q G + E++ +F  M+++G +  N  TL   
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           ++A A+  +  +GK  H   +K   + +VFVG S+I  Y KCG +E +   FD++ E+N+
Sbjct: 216 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 275

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
            +W+A++ GY  +G  +EA+E F  M + G++PN +T + +L AC+H GL+E+G+ +F  
Sbjct: 276 KSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKA 335

Query: 367 AKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              E   +PG+   EHY CMVDLL R+G  KEA + +  +   P    W ALLG C++H 
Sbjct: 336 MSHEFDVEPGV---EHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHK 392

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           NV+LGE +AR++  LDP++   YV+LSN  + AG+W++V  +R  MK  G+ + PG S +
Sbjct: 393 NVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLV 452

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +IK +VHVF+ GDR H  +++IY  L   + +++E
Sbjct: 453 DIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQE 487



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 61/328 (18%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ++D      +VFD + + +V+S  +II  +A+     E++ +F RM    ++  E  + +
Sbjct: 154 QNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRM----VKDGEINYNA 209

Query: 114 VIPSSTALE-----DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           V  S+  L         LGK +H    K+GL+SNVFVG++I+D+Y K   +E A + F+ 
Sbjct: 210 VTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDR 269

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEA 224
               NV S++ M+ G       ++AL++F EM       N +++ +++   S  G  EE 
Sbjct: 270 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK-------LDVFV 277
            + F  M  E  V                     G   + C V  LG+        D+  
Sbjct: 330 WHWFKAMSHEFDVEP-------------------GVEHYGCMVDLLGRAGYLKEAFDLIK 370

Query: 278 GNSLISFYAKCGSMEDSLLV-----FDKLTERNIVTWNAVICG--------YAQNGRGEE 324
           G  L   +   G++  +  +       +++ R +   +   CG        YA  GR E+
Sbjct: 371 GMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWED 430

Query: 325 AIEFFERMRI-----NGIRPNGVTLLGL 347
                ERMRI       ++P G +L+ +
Sbjct: 431 V----ERMRILMKNSGLVKPPGFSLVDI 454



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG    K     + FD + + NV S + ++  +    H +EA+ +F  M +  ++P+  T
Sbjct: 257 CG----KVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 312

Query: 111 FGSVIPSSTALEDLNLGKQ-LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           F SV+ + +    L  G     A + +  ++  V     ++DL  +   ++EA  + +  
Sbjct: 313 FVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM 372

Query: 170 H-NPNVVSYTTMI--CGLLKRERFED--ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
              P+ V +  ++  C + K     +  A KLF+  P +N   +  +   Y+  GR E+ 
Sbjct: 373 KLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDP-KNCGYYVLLSNIYADAGRWEDV 431

Query: 225 VNLFIEMLREGLV 237
             + I M   GLV
Sbjct: 432 ERMRILMKNSGLV 444


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/448 (39%), Positives = 278/448 (62%), Gaps = 36/448 (8%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +SD      ++FDE+P+ N +S  T+I  +A+   + EAI LF R L   + P++FTF S
Sbjct: 85  KSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR-LHREVLPNQFTFAS 143

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ +   +E LNLG Q+H    K+GL S+VFV +A++D+Y K                  
Sbjct: 144 VLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAK------------------ 185

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                   CG     R E++++LF E PHRN V+WN +I G+ Q G  E+A+ LF+ ML 
Sbjct: 186 --------CG-----RMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLE 232

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             +     T   A+ A A++AAL  G   H+  VK     D+ V N+LI  YAKCGS++D
Sbjct: 233 YRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKD 292

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + LVFD + +++ V+WNA+I GY+ +G G EA+  F++M+   ++P+ +T +G+L AC +
Sbjct: 293 ARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACAN 352

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
            GL+++G +YF+ + ++D G ++P  EHY CMV LL R G   +A + + ++PF P +  
Sbjct: 353 AGLLDQGQAYFT-SMIQDHG-IEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMV 410

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W+ALLG C IH+++ELG  +A+R+L ++P+D +++V+LSN  + A +WDNV+++R+ MK 
Sbjct: 411 WRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKR 470

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           KG+ + PG SWIE +  VH F  GD +H
Sbjct: 471 KGVKKEPGLSWIESQGTVHSFTVGDTSH 498



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GK  H   +K  G LD+F  N L++ Y K   + D+  +FD++ ERN +++  +I GYA+
Sbjct: 57  GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC---NHTGLVEKGYSYFSQAKLEDPGML 375
           + R  EAIE F R+    + PN  T   +L AC       L  + + +  +  L     +
Sbjct: 117 SVRFLEAIELFVRLH-REVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFV 175

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
                  ++D+ ++ GR + + E   + P    + +   ++G  Q+      GE A R  
Sbjct: 176 S----NALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGD----GEKALRLF 227

Query: 436 LAL 438
           L +
Sbjct: 228 LNM 230


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 275/456 (60%), Gaps = 35/456 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FDE+   + VS   +I    +  + EE + LF+ ML L + P +FT+GSV+ + ++ + 
Sbjct: 435 MFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQA 494

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN G ++H    K GL  + FVG A++D+Y K   IEEA ++                  
Sbjct: 495 LNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKI------------------ 536

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
               +R E           + +VSWNA+I G++    +E+A + F EML+  + P++ T 
Sbjct: 537 ---HDRIE----------QQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTY 583

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A AN+A++G+GK  H   +K     DV++ ++L+  Y+KCG+M+DS LVF+K   
Sbjct: 584 AIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPN 643

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           ++ VTWNA+ICGYAQ+G GEEA+ +FERM++  +RPN  T + +L AC H G ++KG  Y
Sbjct: 644 KDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHY 703

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F+ A L + G L+P  EHY+CM+D++ RSGR  EA + + ++PF+     W+ LL  C+I
Sbjct: 704 FN-AMLTEYG-LEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKI 761

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N+E+ E A   IL L+PED S+ ++LSN  + AG W  VS +R+ M+   + + PGCS
Sbjct: 762 HGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCS 821

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           WIE+K +VH F+ G++ H   +EIY +L    ++++
Sbjct: 822 WIEVKDEVHAFLVGNKTHPRYEEIYKILSVLLDEMK 857



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 179/385 (46%), Gaps = 48/385 (12%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS +D      ++F+ +P  ++     II    +     EA+  F  +L   +  +E +
Sbjct: 325 CGSLAD----AQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEIS 380

Query: 111 FGSVIPSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
                 +  +++ DL+ G+QLH+ + K  L+SN+ V ++ILD+Y K  ++ EA       
Sbjct: 381 LSGAFSACASIKGDLD-GRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEAC------ 433

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       C             +F EM  R+ VSWNA+I  + Q G  EE +NLF 
Sbjct: 434 ------------C-------------MFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFA 468

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            MLR  + P+  T    + A ++  AL  G   H   +K    LD FVG +LI  Y KCG
Sbjct: 469 SMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCG 528

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            +E++  + D++ ++ +V+WNA+I G+      E+A  FF  M    ++P+  T   +L 
Sbjct: 529 MIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLD 588

Query: 350 ACNHTGLVEKGYSYFSQ-AKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFD 406
           AC +   V  G     Q  KLE    L  + Y  + +VD+ S+ G  +++       P +
Sbjct: 589 ACANLASVGLGKQIHGQIIKLE----LHSDVYITSTLVDMYSKCGNMQDSALVFEKAP-N 643

Query: 407 PGIGFWKALLGGCQIHSNVELGEFA 431
                W A++ G   H    LGE A
Sbjct: 644 KDFVTWNAMICGYAQHG---LGEEA 665



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 152/311 (48%), Gaps = 3/311 (0%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF  +I   +    L  GKQ HA     G   +V++ + ++ +Y++ S +  A +VFE  
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              +V+SY TMI G         A + F + P R+VVSWN+M+ G+ Q G   +++++F+
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFL 164

Query: 230 EMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           +M R E +  + +T    + A + +   G+G   H   V+     DV  G++L+  YAKC
Sbjct: 165 DMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKC 224

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             ++DSL +F ++  +N V W+A+I G  QN      +E F+ M+  GI  +      + 
Sbjct: 225 KRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVF 284

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            +C     ++ G    + A   D G       A + D+ ++ G   +A+     LP    
Sbjct: 285 RSCAGLSALKVGTQLHAHALKCDFGSDITVGTATL-DMYAKCGSLADAQRIFNSLP-KHS 342

Query: 409 IGFWKALLGGC 419
           +  + A++ GC
Sbjct: 343 LQCYNAIIVGC 353



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 180/396 (45%), Gaps = 35/396 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F E+P  N V  + II    +   +   + LF  M  + I  S+  + SV  S   L 
Sbjct: 232 KIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLS 291

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L +G QLHA A K    S++ VG+A LD+Y K  S+ +A R+F                
Sbjct: 292 ALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIF---------------- 335

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            +P  ++  +NA+I G  +  +  EA+  F  +L+ GL  N  +
Sbjct: 336 ---------------NSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEIS 380

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L  A  A A+I     G+  H+ +VK   + ++ V NS++  Y KC ++ ++  +FD++ 
Sbjct: 381 LSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEME 440

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R+ V+WNAVI  + QNG  EE +  F  M    + P+  T   +L AC+    +  G  
Sbjct: 441 RRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGME 500

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI- 421
             ++      G L       ++D+  + G  +EAK+ ++D      +  W A++ G  + 
Sbjct: 501 IHNRIIKSGLG-LDSFVGGALIDMYCKCGMIEEAKK-IHDRIEQQTMVSWNAIIAGFTLL 558

Query: 422 -HSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
            HS      F     +++ P++ +  ++L    ++A
Sbjct: 559 KHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLA 594



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 153/304 (50%), Gaps = 32/304 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-LLLNIRPS 107
           +S  +++ + +  ++ F + P  +VVS  +++  F +     ++I +F  M     +   
Sbjct: 116 ISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFD 175

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           + TF  V+ + + LED  LG Q+H    ++G   +V  GSA+LD+Y K            
Sbjct: 176 QTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKC----------- 224

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                               +R +D+LK+F E+P +N V W+A+I G  Q   +   + L
Sbjct: 225 --------------------KRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLEL 264

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F EM + G+  + S       + A ++AL +G   HA A+K     D+ VG + +  YAK
Sbjct: 265 FKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAK 324

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CGS+ D+  +F+ L + ++  +NA+I G  +N +G EA++FF+ +  +G+  N ++L G 
Sbjct: 325 CGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGA 384

Query: 348 LWAC 351
             AC
Sbjct: 385 FSAC 388



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 5/190 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++ D +    +VS   II  F    H E+A   F  ML ++++P  FT+  V+ +   L 
Sbjct: 535 KIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLA 594

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            + LGKQ+H    K+ L S+V++ S ++D+Y K  +++++  VFE   N + V++  MIC
Sbjct: 595 SVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMIC 654

Query: 183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLV 237
           G  +    E+AL  F+ M   NV     ++ +++   +  G  ++ ++ F  ML E GL 
Sbjct: 655 GYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLE 714

Query: 238 PNHSTLPCAI 247
           P      C I
Sbjct: 715 PQIEHYSCMI 724


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/583 (33%), Positives = 312/583 (53%), Gaps = 79/583 (13%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C S   L K ++LHS    YL +   +S   +E   +    V CG       +   
Sbjct: 250 LLAACASLGDLQKGTQLHS----YLFKAGISSDYIMEGSLLDL-YVKCGD----VETALV 300

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+     NVV    ++  F + +   ++  LF +M    IRP++FT+  ++ + T   +
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           ++LG+Q+H+ + K G +S+++V   ++D+Y K   +E+A RV E     +VVS+T+MI G
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 184 LLKRERFEDALKLFQEMPH---------------------------------------RN 204
            ++ E  +DAL  F+EM                                          +
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGD 480

Query: 205 VVSWNAMIGGYSQTGR-------------------------------NEEAVNLFIEMLR 233
           V  WNA++  Y++ GR                               +EEA+ +F+ M +
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQ 540

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+  N  T   A+ A+AN+A +  GK  HA  +K     +  VGN+LIS Y KCGS ED
Sbjct: 541 SGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFED 600

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + + F +++ERN V+WN +I   +Q+GRG EA++ F++M+  GI+PN VT +G+L AC+H
Sbjct: 601 AKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSH 660

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLVE+G SYF     E     +P+HYAC++D+  R+G+   AK+F+ ++P       W+
Sbjct: 661 VGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWR 720

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LL  C++H N+E+GEFAA+ +L L+P D +SYV+LSNA +V  KW N   +R+ M+++G
Sbjct: 721 TLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRG 780

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           + + PG SWIE+K+ VH F  GDR H + ++IY  L    +++
Sbjct: 781 VRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRV 823



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 169/362 (46%), Gaps = 37/362 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+E+   + VS   ++  +A+    EEA+ L+ +M    + P+ +   SV+ S T  E
Sbjct: 98  RVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAE 157

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               G+ +HA   K G  S +FVG+A++ LY++  S   A RVF D              
Sbjct: 158 LFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD-------------- 203

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            MPHR+ V++N +I G++Q G  E A+ +F EM   GL P+  T
Sbjct: 204 -----------------MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++  L  G   H+   K     D  +  SL+  Y KCG +E +L++F+   
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             N+V WN ++  + Q     ++ E F +M+  GIRPN  T   +L  C  T  ++ G  
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ 366

Query: 363 YFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             S   L      + + Y    ++D+ S+ G  ++A+  L  L  +  +  W +++ G  
Sbjct: 367 IHS---LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLK-EKDVVSWTSMIAGYV 422

Query: 421 IH 422
            H
Sbjct: 423 QH 424



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 170/368 (46%), Gaps = 38/368 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  + CGS    F    +VF ++P  + V+  T+I   A+  H E A+ +F  M   
Sbjct: 183 AVITLYLRCGS----FRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P   T  S++ +  +L DL  G QLH++  K G+ S+  +  ++LDLY+K       
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVK------- 291

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG +     E AL +F      NVV WN M+  + Q     
Sbjct: 292 -------------------CGDV-----ETALVIFNSSDRTNVVLWNLMLVAFGQINDLA 327

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           ++  LF +M   G+ PN  T PC +        + +G+  H+ +VK   + D++V   LI
Sbjct: 328 KSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLI 387

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y+K G +E +  V + L E+++V+W ++I GY Q+   ++A+  F+ M+  GI P+ +
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNI 447

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLY 401
            L   +  C     + +G      A++   G       +  +V+L +R GR +EA     
Sbjct: 448 GLASAISGCAGINAMRQGLQI--HARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 402 DLPFDPGI 409
           ++    GI
Sbjct: 506 EMELKDGI 513



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 133/271 (49%), Gaps = 38/271 (14%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++HA A   GL     VG+ ++DLY K   +  A RVFE                     
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFE--------------------- 101

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     E+  R+ VSW AM+ GY+Q G  EEA+ L+ +M R G+VP    L   + 
Sbjct: 102 ----------ELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLS 151

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           +         G+  HA   K     ++FVGN++I+ Y +CGS   +  VF  +  R+ VT
Sbjct: 152 SCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVT 211

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
           +N +I G+AQ G GE A+E FE M+ +G+ P+ VT+  LL AC   G ++KG   +SY  
Sbjct: 212 FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           +A +    +++      ++DL  + G  + A
Sbjct: 272 KAGISSDYIME----GSLLDLYVKCGDVETA 298



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 31/273 (11%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  R   S    + G+       + ++LF +  R+     H  L     A A  A  G G
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQ-----HGGLGPLDFACALRACRGNG 55

Query: 260 KSF------HACAV-KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           + +      HA AV + LGK  + VGN LI  Y+K G +  +  VF++L+ R+ V+W A+
Sbjct: 56  RRWQVVPEIHAKAVTRGLGKYRI-VGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAM 114

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           + GYAQNG GEEA+  + +M   G+ P    L  +L +C    L  +G    +Q      
Sbjct: 115 LSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGY---- 170

Query: 373 GMLKPEHYAC--------MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI-HS 423
                +H  C        ++ L  R G F+ A+    D+P    + F   + G  Q  H 
Sbjct: 171 -----KHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHG 225

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
              L  F   +   L P+ V+   +L+   S+ 
Sbjct: 226 EHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/583 (33%), Positives = 312/583 (53%), Gaps = 79/583 (13%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C S   L K ++LHS    YL +   +S   +E   +    V CG       +   
Sbjct: 250 LLAACASLGDLQKGTQLHS----YLFKAGISSDYIMEGSLLDL-YVKCGD----VETALV 300

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+     NVV    ++  F + +   ++  LF +M    IRP++FT+  ++ + T   +
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           ++LG+Q+H+ + K G +S+++V   ++D+Y K   +E+A RV E     +VVS+T+MI G
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 184 LLKRERFEDALKLFQEMPH---------------------------------------RN 204
            ++ E  +DAL  F+EM                                          +
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGD 480

Query: 205 VVSWNAMIGGYSQTGR-------------------------------NEEAVNLFIEMLR 233
           V  WNA++  Y++ GR                               +EEA+ +F+ M +
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ 540

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+  N  T   A+ A+AN+A +  GK  HA  +K     +  VGN+LIS Y KCGS ED
Sbjct: 541 SGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFED 600

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + + F +++ERN V+WN +I   +Q+GRG EA++ F++M+  GI+PN VT +G+L AC+H
Sbjct: 601 AKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSH 660

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLVE+G SYF     E     +P+HYAC++D+  R+G+   AK+F+ ++P       W+
Sbjct: 661 VGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWR 720

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LL  C++H N+E+GEFAA+ +L L+P D +SYV+LSNA +V  KW N   +R+ M+++G
Sbjct: 721 TLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRG 780

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           + + PG SWIE+K+ VH F  GDR H + ++IY  L    +++
Sbjct: 781 VRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRV 823



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 170/362 (46%), Gaps = 37/362 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+E+   + VS   ++  +A+    EEA+ L+ +M    + P+ +   SV+ S T  E
Sbjct: 98  RVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAE 157

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               G+ +HA   K G  S +FVG+A++ LY++  S   A RVF D              
Sbjct: 158 LFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD-------------- 203

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            MPHR+ V++N +I G++Q G  E A+ +F EM   GL P+  T
Sbjct: 204 -----------------MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++  L  G   H+   K     D  +  SL+  Y KCG +E +L++F+   
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             N+V WN ++  + Q     ++ E F +M+  GIRPN  T   +L  C  T  ++ G  
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ 366

Query: 363 YFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             S   L      + + Y    ++D+ S+ G  ++A+  L ++  +  +  W +++ G  
Sbjct: 367 IHS---LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGYV 422

Query: 421 IH 422
            H
Sbjct: 423 QH 424



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 173/377 (45%), Gaps = 39/377 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  + CGS    F    +VF ++P  + V+  T+I   A+  H E A+ +F  M   
Sbjct: 183 AVITLYLRCGS----FRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P   T  S++ +  +L DL  G QLH++  K G+ S+  +  ++LDLY+K       
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVK------- 291

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG +     E AL +F      NVV WN M+  + Q     
Sbjct: 292 -------------------CGDV-----ETALVIFNSSDRTNVVLWNLMLVAFGQINDLA 327

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           ++  LF +M   G+ PN  T PC +        + +G+  H+ +VK   + D++V   LI
Sbjct: 328 KSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLI 387

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y+K G +E +  V + L E+++V+W ++I GY Q+   ++A+  F+ M+  GI P+ +
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNI 447

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLY 401
            L   +  C     + +G      A++   G       +  +V+L +R GR +EA     
Sbjct: 448 GLASAISGCAGINAMRQGLQI--HARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 402 DLPFDPGIGFWKALLGG 418
           ++     I  W  L+ G
Sbjct: 506 EIEHKDEIT-WNGLVSG 521



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 133/271 (49%), Gaps = 38/271 (14%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++HA A   GL     VG+ ++DLY K   +  A RVFE                     
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFE--------------------- 101

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     E+  R+ VSW AM+ GY+Q G  EEA+ L+ +M R G+VP    L   + 
Sbjct: 102 ----------ELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLS 151

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           +         G+  HA   K     ++FVGN++I+ Y +CGS   +  VF  +  R+ VT
Sbjct: 152 SCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVT 211

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
           +N +I G+AQ G GE A+E FE M+ +G+ P+ VT+  LL AC   G ++KG   +SY  
Sbjct: 212 FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           +A +    +++      ++DL  + G  + A
Sbjct: 272 KAGISSDYIME----GSLLDLYVKCGDVETA 298



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 31/273 (11%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  R   S    + G+       + ++LF +  R+     H  L     A A  A  G G
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQ-----HGGLGPLDFACALRACRGNG 55

Query: 260 KSF------HACAV-KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           + +      HA AV + LGK  + VGN LI  Y+K G +  +  VF++L+ R+ V+W A+
Sbjct: 56  RRWQVVPEIHAKAVTRGLGKYRI-VGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAM 114

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           + GYAQNG GEEA+  + +M   G+ P    L  +L +C    L  +G    +Q      
Sbjct: 115 LSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGY---- 170

Query: 373 GMLKPEHYAC--------MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI-HS 423
                +H  C        ++ L  R G F+ A+    D+P    + F   + G  Q  H 
Sbjct: 171 -----KHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHG 225

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
              L  F   +   L P+ V+   +L+   S+ 
Sbjct: 226 EHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 193/583 (33%), Positives = 312/583 (53%), Gaps = 79/583 (13%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C S   L K ++LHS    YL +   +S   +E   +    V CG       +   
Sbjct: 250 LLAACASLGDLQKGTQLHS----YLFKAGISSDYIMEGSLLDL-YVKCGD----VETALV 300

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+     NVV    ++  F + +   ++  LF +M    IRP++FT+  ++ + T   +
Sbjct: 301 IFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTRE 360

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           ++LG+Q+H+ + K G +S+++V   ++D+Y K   +E+A RV E     +VVS+T+MI G
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 184 LLKRERFEDALKLFQEMPH---------------------------------------RN 204
            ++ E  +DAL  F+EM                                          +
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGD 480

Query: 205 VVSWNAMIGGYSQTGR-------------------------------NEEAVNLFIEMLR 233
           V  WNA++  Y++ GR                               +EEA+ +F+ M +
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ 540

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+  N  T   A+ A+AN+A +  GK  HA  +K     +  VGN+LIS Y KCGS ED
Sbjct: 541 SGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFED 600

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + + F +++ERN V+WN +I   +Q+GRG EA++ F++M+  GI+PN VT +G+L AC+H
Sbjct: 601 AKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSH 660

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLVE+G SYF     E     +P+HYAC++D+  R+G+   AK+F+ ++P       W+
Sbjct: 661 VGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWR 720

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LL  C++H N+E+GEFAA+ +L L+P D +SYV+LSNA +V  KW N   +R+ M+++G
Sbjct: 721 TLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRG 780

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           + + PG SWIE+K+ VH F  GDR H + ++IY  L    +++
Sbjct: 781 VRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRV 823



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 170/362 (46%), Gaps = 37/362 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+E+   + VS   ++  +A+    EEA+ L+ +M    + P+ +   SV+ S T  E
Sbjct: 98  RVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAE 157

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               G+ +HA   K G  S +FVG+A++ LY++  S   A RVF D              
Sbjct: 158 LFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD-------------- 203

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            MPHR+ V++N +I G++Q G  E A+ +F EM   GL P+  T
Sbjct: 204 -----------------MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVT 246

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++  L  G   H+   K     D  +  SL+  Y KCG +E +L++F+   
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSD 306

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             N+V WN ++  + Q     ++ E F +M+  GIRPN  T   +L  C  T  ++ G  
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ 366

Query: 363 YFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             S   L      + + Y    ++D+ S+ G  ++A+  L ++  +  +  W +++ G  
Sbjct: 367 IHS---LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGYV 422

Query: 421 IH 422
            H
Sbjct: 423 QH 424



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 173/377 (45%), Gaps = 39/377 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  + CGS    F    +VF ++P  + V+  T+I   A+  H E A+ +F  M   
Sbjct: 183 AVITLYLRCGS----FRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P   T  S++ +  +L DL  G QLH++  K G+ S+  +  ++LDLY+K       
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVK------- 291

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG +     E AL +F      NVV WN M+  + Q     
Sbjct: 292 -------------------CGDV-----ETALVIFNSSDRTNVVLWNLMLVAFGQINDLA 327

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           ++  LF +M   G+ PN  T PC +        + +G+  H+ +VK   + D++V   LI
Sbjct: 328 KSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLI 387

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y+K G +E +  V + L E+++V+W ++I GY Q+   ++A+  F+ M+  GI P+ +
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNI 447

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLY 401
            L   +  C     + +G      A++   G       +  +V+L +R GR +EA     
Sbjct: 448 GLASAISGCAGINAMRQGLQI--HARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFE 505

Query: 402 DLPFDPGIGFWKALLGG 418
           ++     I  W  L+ G
Sbjct: 506 EIEHKDEIT-WNGLVSG 521



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 133/271 (49%), Gaps = 38/271 (14%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++HA A   GL     VG+ ++DLY K   +  A RVFE                     
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFE--------------------- 101

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     E+  R+ VSW AM+ GY+Q G  EEA+ L+ +M R G+VP    L   + 
Sbjct: 102 ----------ELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLS 151

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           +         G+  HA   K     ++FVGN++I+ Y +CGS   +  VF  +  R+ VT
Sbjct: 152 SCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVT 211

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
           +N +I G+AQ G GE A+E FE M+ +G+ P+ VT+  LL AC   G ++KG   +SY  
Sbjct: 212 FNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           +A +    +++      ++DL  + G  + A
Sbjct: 272 KAGISSDYIME----GSLLDLYVKCGDVETA 298



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 31/273 (11%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  R   S    + G+       + ++LF +  R+     H  L     A A  A  G G
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQ-----HGGLGPLDFACALRACRGNG 55

Query: 260 KSF------HACAV-KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           + +      HA AV + LGK  + VGN LI  Y+K G +  +  VF++L+ R+ V+W A+
Sbjct: 56  RRWQVVPEIHAKAVTRGLGKYRI-VGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAM 114

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           + GYAQNG GEEA+  + +M   G+ P    L  +L +C    L  +G    +Q      
Sbjct: 115 LSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGY---- 170

Query: 373 GMLKPEHYAC--------MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI-HS 423
                +H  C        ++ L  R G F+ A+    D+P    + F   + G  Q  H 
Sbjct: 171 -----KHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHG 225

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
              L  F   +   L P+ V+   +L+   S+ 
Sbjct: 226 EHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 186/503 (36%), Positives = 292/503 (58%), Gaps = 41/503 (8%)

Query: 25  PNYLIETQKASVQKLET-----PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTI 79
           P  L   QK  ++ +E      P + T  V   ++    S    +FD +P+ NVV+ T +
Sbjct: 161 PELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLL 220

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           I  +A+Q   + A+ L   M    + P++ TF S++   T    L  GK++H +  + G 
Sbjct: 221 IAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGY 280

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
              ++V ++++ +Y K                          CG L     E+A KLF +
Sbjct: 281 GRELWVVNSLITMYCK--------------------------CGGL-----EEARKLFSD 309

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           +PHR+VV+W AM+ GY+Q G ++EA+NLF  M ++G+ P+  T    + + ++ A L  G
Sbjct: 310 LPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEG 369

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY-AQ 318
           K  H   V     LDV++ ++L+S YAKCGSM+D+ LVF++++ERN+V W A+I G  AQ
Sbjct: 370 KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQ 429

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP- 377
           +GR  EA+E+F++M+  GI+P+ VT   +L AC H GLVE+G  +F    L D G +KP 
Sbjct: 430 HGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYL-DYG-IKPM 487

Query: 378 -EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436
            EHY+C VDLL R+G  +EA+  +  +PF PG   W ALL  C++HS+VE GE AA  +L
Sbjct: 488 VEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVL 547

Query: 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGD 496
            LDP+D  +YV LS+  + AG++++   +R+ M+++ + + PG SWIE+  KVHVF   D
Sbjct: 548 KLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVED 607

Query: 497 RNHHMNDEIYAVLRSCTEQIREF 519
           ++H  +++IY  L   TEQI+E 
Sbjct: 608 KSHPESEQIYVELGKLTEQIKEM 630



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 39/339 (11%)

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142
             K    +EA+ + + M+L   R     F  ++     L  L  G+++HA   K G+Q N
Sbjct: 22  LCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 81

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
            ++ + +L +Y K  S+ +A RVF+   +                               
Sbjct: 82  RYLENTLLSMYAKCGSLTDARRVFDSIRD------------------------------- 110

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           RN+VSW AMI  +    +N EA   +  M   G  P+  T    + A  N   L +G+  
Sbjct: 111 RNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKV 170

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H   V+   +L+  VG SL+  YAKCG +  + ++FD+L E+N+VTW  +I GYAQ G+ 
Sbjct: 171 HMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQV 230

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEH 379
           + A+E  E M+   + PN +T   +L  C     +E G   + Y  Q+       +    
Sbjct: 231 DVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV---- 286

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              ++ +  + G  +EA++   DLP    +  W A++ G
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHRDVVT-WTAMVTG 324


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 202/585 (34%), Positives = 310/585 (52%), Gaps = 79/585 (13%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C S+ +L K  +LHS    Y+I+   +S   +E  A+    V+C        + H+
Sbjct: 320 LLSACASNGALCKGEQLHS----YVIKAGISSDMIVE-GALLDLYVNCSD----IKTAHE 370

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F      NVV    ++  F K  +  E+  +F +M +  + P++FT+ S++ + T++  
Sbjct: 371 MFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGA 430

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+LG+Q+H    K G Q NV+V S ++D+Y K   ++ A  +       +VVS+T +I G
Sbjct: 431 LDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISG 490

Query: 184 LLKRERFEDALKLFQEMPHRNVVS------------------------------------ 207
             +   F +ALK F+EM +R + S                                    
Sbjct: 491 YAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSED 550

Query: 208 ---WNAMIGGYSQTGRNEE-------------------------------AVNLFIEMLR 233
               NA++  Y++ GR +E                               A+ +F +M R
Sbjct: 551 LSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNR 610

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             L  +  T   A+ AAANIA +  GK  HA  +K     D+ V N+LI+FYAKCGS+ED
Sbjct: 611 AKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIED 670

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +   F ++ E+N V+WNA+I GY+Q+G G EA+  FE+M+  G  PN VT +G+L AC+H
Sbjct: 671 ARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSH 730

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLV KG  YF     E   + KP HYAC+VDL+SR+G    A++F+ ++P +P    W+
Sbjct: 731 VGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWR 790

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LL  C +H NVE+GEFAA+ +L L+PED ++YV+LSN  +V+GKWD     R+ M+ +G
Sbjct: 791 TLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRG 850

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + + PG SWIE+K+ VH F  GDR H + D+IY  L    ++  E
Sbjct: 851 VKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAE 895



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 178/387 (45%), Gaps = 37/387 (9%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           L +P I    +   +++    S  +VFD +   + VS   +I  F++  + EEAI+LF  
Sbjct: 144 LCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCE 203

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M    I P+ + F SV+   T ++  ++G+QLHA   K G     +V +A++ LY ++  
Sbjct: 204 MHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRM-- 261

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
                        PN VS                A K+F +M  ++ VS+N++I G +Q 
Sbjct: 262 -------------PNFVS----------------AEKVFSKMQSKDEVSFNSLISGLAQQ 292

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G ++ A+ LF +M R+ L P+  T+   + A A+  AL  G+  H+  +K     D+ V 
Sbjct: 293 GFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVE 352

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
            +L+  Y  C  ++ +  +F      N+V WN ++  + +     E+   F +M+I G+ 
Sbjct: 353 GALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI 412

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEA 396
           PN  T   +L  C   G ++ G    +Q         +   Y C  ++D+ ++ G+   A
Sbjct: 413 PNQFTYPSILRTCTSVGALDLGEQIHTQVI---KTGFQFNVYVCSVLIDMYAKHGKLDTA 469

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHS 423
              L  L  D  +  W AL+ G   H+
Sbjct: 470 HVILRTLTEDDVVS-WTALISGYAQHN 495



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 185/409 (45%), Gaps = 60/409 (14%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKF--- 58
           I LL +C +S SL +  KLH                K+       +SV C    D +   
Sbjct: 14  IWLLDLCLNSGSLVECKKLHG---------------KILKLGFGNESVLCNKLVDVYFAL 58

Query: 59  ---SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
                V +VF+++P+ +V S   II  F ++      + LFS M+  N+ P+E +F SV+
Sbjct: 59  GDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVL 118

Query: 116 PSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
            + +     +   +Q+HA     GL  +  + + ++ LY K   I  A +VF++      
Sbjct: 119 RACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDN------ 172

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                                    +  ++ VSW AMI G+SQ G  EEA++LF EM   
Sbjct: 173 -------------------------LCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTA 207

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ P        +     I    +G+  HA   K+   L+ +V N+L++ Y++  +   +
Sbjct: 208 GIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSA 267

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VF K+  ++ V++N++I G AQ G  + A+E F +M+ + ++P+ VT+  LL AC   
Sbjct: 268 EKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASN 327

Query: 355 GLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
           G + KG   +SY  +A +    +++      ++DL       K A E  
Sbjct: 328 GALCKGEQLHSYVIKAGISSDMIVE----GALLDLYVNCSDIKTAHEMF 372



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 139/333 (41%), Gaps = 42/333 (12%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K+LH    K+G  +   + + ++D+Y  L  ++   +VFED                   
Sbjct: 30  KKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFED------------------- 70

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                       MP+R+V SW+ +I G+ +   +   ++LF  M+ E + P   +   ++
Sbjct: 71  ------------MPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFA-SV 117

Query: 248 IAAANIAALGM--GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
           + A +   +G+   +  HA  +         + N LI  YAK G +  +  VFD L  ++
Sbjct: 118 LRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKD 177

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
            V+W A+I G++QNG  EEAI  F  M   GI P       +L  C    L + G    +
Sbjct: 178 SVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHA 237

Query: 366 QAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC--QI 421
                   +   E Y C  +V L SR   F  A++    +     + F  +L+ G   Q 
Sbjct: 238 LVFKYGSSL---ETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSF-NSLISGLAQQG 293

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
            S+  L  F   +   L P+ V+   +LS   S
Sbjct: 294 FSDGALELFTKMKRDYLKPDCVTVASLLSACAS 326



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 80/191 (41%), Gaps = 7/191 (3%)

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   G+  N  T    +    N  +L   K  H   +K     +  + N L+  Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++  + VF+ +  R++ +W+ +I G+ +       ++ F  M    + P  ++   +L A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 351 CNHTGLVEKGYSYFSQ--AKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C+   +   G  Y  Q  A++   G+L  P     ++ L +++G    A++   +L    
Sbjct: 121 CSGHRI---GIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKD 177

Query: 408 GIGFWKALLGG 418
            +  W A++ G
Sbjct: 178 SVS-WVAMISG 187


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 178/465 (38%), Positives = 280/465 (60%), Gaps = 8/465 (1%)

Query: 63  QVFDEVPDL----NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++F E+ D     N++S   +I  F     Y EA+ +F  M L    P   T  SV+P+ 
Sbjct: 201 RLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             LEDL +G  +H +  K GL S+  V SA++D+Y K S   E ++VF+   + +V S  
Sbjct: 261 GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCN 320

Query: 179 TMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
             I GL +  + E +L+LF+++  +    NVVSW +MI   SQ GR+ EA+ LF EM   
Sbjct: 321 AFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIA 380

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ PN  T+PC + A  NIAAL  GK+ H  +++     DV+VG++LI  YAKCG ++ S
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
            + FD +  +N+V WNAVI GYA +G+ +EA+E F+ M+ +G +P+ ++   +L AC+ +
Sbjct: 441 RICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQS 500

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           GL E+G  YF+    +     + EHYACMV LLSR+G+ ++A   +  +P +P    W A
Sbjct: 501 GLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGA 560

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LL  C++H+NV LGE AA ++  L+P +  +Y++LSN  +  G W+ V+ +R  MK KG+
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGL 620

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            + PGCSWIE+K+KVH+ + GD++H    +I   L   + ++++ 
Sbjct: 621 RKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKL 665



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 201/412 (48%), Gaps = 49/412 (11%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F+    V D VP+ NV S +T+I  F+K H +  A+  FS+ML   + P      S + +
Sbjct: 64  FADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKA 123

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L  L   +Q+H  A+  G  S+ FV S+++ +YIK + I +A RVF+    P+VVS+
Sbjct: 124 CAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSW 183

Query: 178 TTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           + ++    ++   ++A +LF EM       N++SWN MI G++ +G   EAV +F++M  
Sbjct: 184 SALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHL 243

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC----- 288
            G  P+ +T+   + A  ++  L MG   H   +K     D  V ++LI  Y KC     
Sbjct: 244 RGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSE 303

Query: 289 --------------------------GSMEDSLLVF----DKLTERNIVTWNAVICGYAQ 318
                                     G +E SL +F    D+  E N+V+W ++I   +Q
Sbjct: 304 MSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQ 363

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY--FSQAKLEDPGMLK 376
           NGR  EA+E F  M+I G++PN VT+  LL AC +   +  G +   FS  +      + 
Sbjct: 364 NGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR-----GIS 418

Query: 377 PEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            + Y  + ++D+ ++ GR + ++     +P    +  W A++ G  +H   +
Sbjct: 419 TDVYVGSALIDMYAKCGRIQASRICFDGIP-TKNLVCWNAVIAGYAMHGKAK 469



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 33/257 (12%)

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           + T  + + S+TA   L+  +Q HA   K GL ++  + + +L  Y       +AT V +
Sbjct: 15  QHTILNCLNSTTA--SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLD 72

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
               PNV S++T+I    K  +F  AL  F                              
Sbjct: 73  LVPEPNVFSFSTLIYAFSKFHQFHHALSTFS----------------------------- 103

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
             +ML  GL+P++  LP A+ A A ++AL   +  H  A       D FV +SL+  Y K
Sbjct: 104 --QMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIK 161

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C  + D+  VFD++ E ++V+W+A++  YA+ G  +EA   F  M  +G++PN ++  G+
Sbjct: 162 CNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGM 221

Query: 348 LWACNHTGLVEKGYSYF 364
           +   NH+GL  +    F
Sbjct: 222 IAGFNHSGLYSEAVLMF 238


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/445 (37%), Positives = 272/445 (61%), Gaps = 42/445 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +  HQ+FD++P  NV+S TT+I  ++K   +++A+ L   ML  N+RP+ +T+ SV+ S
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              + D+   + LH    K GL+S+VFV SA++D++ KL               P     
Sbjct: 172 CNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGE-------------P----- 210

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                        EDAL +F EM   + + WN++IGG++Q  R++ A+ LF  M R G +
Sbjct: 211 -------------EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 257

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
              +TL   + A   +A L +G   H   VK+    D+ + N+L+  Y KCGS+ED+L V
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDALRV 315

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++ ER+++TW+ +I G AQNG  +EA++ FERM+ +G +PN +T++G+L+AC+H GL+
Sbjct: 316 FNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLL 375

Query: 358 EKGYSYF-SQAKLE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           E G+ YF S  KL   DP     EHY CM+DLL ++G+  +A + L ++  +P    W+ 
Sbjct: 376 EDGWYYFRSMKKLYGIDP---VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG C++  N+ L E+AA++++ALDPED  +Y +LSN  + + KWD+V  IR  M+++G+
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNH 499
            + PGCSWIE+  ++H F+ GD +H
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSH 517



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 7/254 (2%)

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           ++ + H P +     +I   +K     DA +LF +MP RNV+SW  MI  YS+   +++A
Sbjct: 87  LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           + L + MLR+ + PN  T    + +   ++ + M    H   +K   + DVFV ++LI  
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDV 203

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           +AK G  ED+L VFD++   + + WN++I G+AQN R + A+E F+RM+  G      TL
Sbjct: 204 FAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATL 263

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
             +L AC    L+E G          D  ++       +VD+  + G  ++A      + 
Sbjct: 264 TSVLRACTGLALLELGMQAHVHIVKYDQDLILNN---ALVDMYCKCGSLEDALRVFNQMK 320

Query: 405 FDPGIGFWKALLGG 418
            +  +  W  ++ G
Sbjct: 321 -ERDVITWSTMISG 333


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 178/465 (38%), Positives = 280/465 (60%), Gaps = 8/465 (1%)

Query: 63  QVFDEVPDL----NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++F E+ D     N++S   +I  F     Y EA+ +F  M L    P   T  SV+P+ 
Sbjct: 201 RLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             LEDL +G  +H +  K GL S+  V SA++D+Y K S   E ++VF+   + +V S  
Sbjct: 261 GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCN 320

Query: 179 TMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
             I GL +  + E +L+LF+++  +    NVVSW +MI   SQ GR+ EA+ LF EM   
Sbjct: 321 AFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIA 380

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ PN  T+PC + A  NIAAL  GK+ H  +++     DV+VG++LI  YAKCG ++ S
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
            + FD +  +N+V WNAVI GYA +G+ +EA+E F+ M+ +G +P+ ++   +L AC+ +
Sbjct: 441 RICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQS 500

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           GL E+G  YF+    +     + EHYACMV LLSR+G+ ++A   +  +P +P    W A
Sbjct: 501 GLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGA 560

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LL  C++H+NV LGE AA ++  L+P +  +Y++LSN  +  G W+ V+ +R  MK KG+
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGL 620

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            + PGCSWIE+K+KVH+ + GD++H    +I   L   + ++++ 
Sbjct: 621 RKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKL 665



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 202/412 (49%), Gaps = 49/412 (11%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F+    V D VP+ NV S +T+I  F+K H +  A+  FS+ML   + P      S + +
Sbjct: 64  FADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKA 123

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L  L   +Q+H  A+  G  S+ FV S+++ +YIK + I +A RVF+    P+VVS+
Sbjct: 124 CAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSW 183

Query: 178 TTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           + ++    ++   ++A +LF EM       N++SWN MI G++ +G   EAV +F++M  
Sbjct: 184 SALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHL 243

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC----- 288
            G  P+ +T+   + A  ++  L MG   H   +K     D  V ++LI  Y KC     
Sbjct: 244 RGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSE 303

Query: 289 --------------------------GSMEDSLLVFDKLTER----NIVTWNAVICGYAQ 318
                                     G +E SL +F +L ++    N+V+W ++I   +Q
Sbjct: 304 MSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQ 363

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY--FSQAKLEDPGMLK 376
           NGR  EA+E F  M+I G++PN VT+  LL AC +   +  G +   FS  +      + 
Sbjct: 364 NGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRR-----GIS 418

Query: 377 PEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            + Y  + ++D+ ++ GR + ++     +P    +  W A++ G  +H   +
Sbjct: 419 TDVYVGSALIDMYAKCGRIQASRICFDGIP-TKNLVCWNAVIAGYAMHGKAK 469



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 33/257 (12%)

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           + T  + + S+TA   L+  +Q HA   K GL ++  + + +L  Y       +AT V +
Sbjct: 15  QHTIFNCLNSTTA--SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLD 72

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
               PNV S++T+I    K  +F  AL  F                              
Sbjct: 73  LVPEPNVFSFSTLIYAFSKFHQFHHALSTFS----------------------------- 103

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
             +ML  GL+P++  LP A+ A A ++AL   +  H  A       D FV +SL+  Y K
Sbjct: 104 --QMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIK 161

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C  + D+  VFD++ E ++V+W+A++  YA+ G  +EA   F  M  +G++PN ++  G+
Sbjct: 162 CNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGM 221

Query: 348 LWACNHTGLVEKGYSYF 364
           +   NH+GL  +    F
Sbjct: 222 IAGFNHSGLYSEAVLMF 238


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/445 (37%), Positives = 272/445 (61%), Gaps = 42/445 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +  HQ+FD++P  NV+S TT+I  ++K   +++A+ L   ML  N+RP+ +T+ SV+ S
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              + D+   + LH    K GL+S+VFV SA++D++ KL               P     
Sbjct: 172 CNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGE-------------P----- 210

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                        EDAL +F EM   + + WN++IGG++Q  R++ A+ LF  M R G +
Sbjct: 211 -------------EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 257

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
              +TL   + A   +A L +G   H   VK+    D+ + N+L+  Y KCGS+ED+L V
Sbjct: 258 AEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDALRV 315

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++ ER+++TW+ +I G AQNG  +EA++ FERM+ +G +PN +T++G+L+AC+H GL+
Sbjct: 316 FNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLL 375

Query: 358 EKGYSYF-SQAKLE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           E G+ YF S  KL   DP     EHY CM+DLL ++G+  +A + L ++  +P    W+ 
Sbjct: 376 EDGWYYFRSMKKLYGIDP---VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 432

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG C++  N+ L E+AA++++ALDPED  +Y +LSN  + + KWD+V  IR  M+++G+
Sbjct: 433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGI 492

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNH 499
            + PGCSWIE+  ++H F+ GD +H
Sbjct: 493 KKEPGCSWIEVNKQIHAFIIGDNSH 517



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 7/254 (2%)

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           ++ + H P +     +I   +K     DA +LF +MP RNV+SW  MI  YS+   +++A
Sbjct: 87  LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 146

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           + L + MLR+ + PN  T    + +   ++ + M    H   +K   + DVFV ++LI  
Sbjct: 147 LELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDV 203

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           +AK G  ED+L VFD++   + + WN++I G+AQN R + A+E F+RM+  G      TL
Sbjct: 204 FAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATL 263

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
             +L AC    L+E G          D  ++       +VD+  + G  ++A      + 
Sbjct: 264 TSVLRACTGLALLELGMQAHVHIVKYDQDLILNN---ALVDMYCKCGSLEDALRVFNQMK 320

Query: 405 FDPGIGFWKALLGG 418
            +  +  W  ++ G
Sbjct: 321 -ERDVITWSTMISG 333


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/420 (41%), Positives = 259/420 (61%), Gaps = 9/420 (2%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLS 157
           M+     P E T  SV+ +   L     G+Q+HA   K   L+ ++ + +A++D+Y K  
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
              EA  +F+   + +VVS T+++ G  K    EDA  +F +M  +NV++WN +I  Y+Q
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK------FLG 271
            G  EEA+ LF+++ R+ + P H T    + A  NIA L +G+  H   +K      F  
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 180

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           + DVFVGNSL+  Y K GS++D   VF+++  R+ V+WNA+I GYAQNGR ++A+  FER
Sbjct: 181 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFER 240

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRS 390
           M  +   P+ VT++G+L AC H+GLV++G  +F     ED G+    +HY CMVDLL R+
Sbjct: 241 MLCSNENPDSVTMIGVLSACGHSGLVDEGRRHF-HFMTEDHGITPSRDHYTCMVDLLGRA 299

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450
           G  KEA+E + D+P +P    W +LLG C++H NVELGE  A R+  LDPE+   YV+LS
Sbjct: 300 GHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYVLLS 359

Query: 451 NALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           N  +  GKW +V  +RR MK++G+++ PGCSWIEI SK++VF+  D  H   +EI++ LR
Sbjct: 360 NMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNEIHSTLR 419



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 106/206 (51%), Gaps = 11/206 (5%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S        VF ++ + NV++   +I  +A+    EEAI LF ++   +I P+ +T+G
Sbjct: 88  AKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYG 147

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGL------QSNVFVGSAILDLYIKLSSIEEATRVF 166
           +V+ +   +  L LG+Q H    K G       +S+VFVG++++D+Y+K  SI++  +VF
Sbjct: 148 NVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVF 207

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNE 222
           E     + VS+  MI G  +  R +DAL LF+ M     + + V+   ++     +G  +
Sbjct: 208 ERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVD 267

Query: 223 EAVNLFIEMLRE-GLVPNHSTLPCAI 247
           E    F  M  + G+ P+     C +
Sbjct: 268 EGRRHFHFMTEDHGITPSRDHYTCMV 293


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 172/457 (37%), Positives = 278/457 (60%), Gaps = 43/457 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            +FDE+P+ NVVS TT+I  ++ + + ++A+     M    +RP+ FT+ SV+ +   L 
Sbjct: 111 DLFDEMPERNVVSWTTMISAYSNKLN-DKALKCLILMFREGVRPNMFTYSSVLRACDGLP 169

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +L   +QLH    K GL+S+VFV SA++D+Y K S ++                      
Sbjct: 170 NL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLD---------------------- 204

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                    +AL +F EMP R++V WN++IGG++Q     EA+NLF  M R G + + +T
Sbjct: 205 ---------NALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQAT 255

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A   +A L +G+  H   +KF    D+ + N+LI  Y KCGS+ED+   F ++ 
Sbjct: 256 LTSVLRACTGLALLELGRQVHVHVLKF--DQDLILNNALIDMYCKCGSLEDANSAFSRMV 313

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+++++W+ ++ G AQNG   +A+E FE M+ +G RPN +T+LG+L+AC+H GLVEKG+ 
Sbjct: 314 EKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWY 373

Query: 363 YF-SQAKL--EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           YF S  KL   DPG    EHY C++DLL R+GR  EA + ++++  +P    W+ LLG C
Sbjct: 374 YFRSMKKLFGVDPGR---EHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGAC 430

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H NV+L  +AA++I+ L+PED  +Y++LSN  +   +W++V+ +R+ M  +G+ + PG
Sbjct: 431 RVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPG 490

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           CSWIE+  ++HVF+ GD +H   +EI   L    E++
Sbjct: 491 CSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERV 527



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 182/422 (43%), Gaps = 70/422 (16%)

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142
           F  Q     A+     M    +     T+  +I   +A   +  GK++H      G +  
Sbjct: 30  FCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPK 89

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
           +FV + +L++Y+K + +EEA                            ED   LF EMP 
Sbjct: 90  MFVVNTLLNMYVKFNLLEEA----------------------------ED---LFDEMPE 118

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           RNVVSW  MI  YS    N++A+   I M REG+ PN  T    + A   +  L   +  
Sbjct: 119 RNVVSWTTMISAYSNK-LNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL---RQL 174

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H   +K   + DVFV ++LI  Y+K   ++++L VFD++  R++V WN++I G+AQN  G
Sbjct: 175 HCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDG 234

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS-------------------- 362
            EA+  F+RM+  G   +  TL  +L AC    L+E G                      
Sbjct: 235 NEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALID 294

Query: 363 -YFSQAKLEDPG-----MLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            Y     LED       M++ +   ++ MV  L+++G  ++A E    +        +  
Sbjct: 295 MYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYIT 354

Query: 415 LLG---GCQIHSNVELGEF---AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           +LG    C     VE G +   + +++  +DP     Y  L + L  AG+ D    +  E
Sbjct: 355 VLGVLFACSHAGLVEKGWYYFRSMKKLFGVDP-GREHYGCLIDLLGRAGRLDEAVKLIHE 413

Query: 469 MK 470
           M+
Sbjct: 414 ME 415



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 120/275 (43%), Gaps = 41/275 (14%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +R+  +   S+     +   VFDE+P  ++V   +IIG FA+     EA+ LF RM    
Sbjct: 189 VRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAG 248

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
               + T  SV+ + T L  L LG+Q+H    K     ++ + +A++D+Y K  S+E+A 
Sbjct: 249 FLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDAN 306

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
             F      +V+S++TM+ GL                               +Q G + +
Sbjct: 307 SAFSRMVEKDVISWSTMVAGL-------------------------------AQNGYSRQ 335

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS--- 280
           A+ LF  M   G  PN+ T+   + A ++   +  G  +     K  G   V  G     
Sbjct: 336 ALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFG---VDPGREHYG 392

Query: 281 -LISFYAKCGSMEDSL-LVFDKLTERNIVTWNAVI 313
            LI    + G +++++ L+ +   E + VTW  ++
Sbjct: 393 CLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLL 427


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 180/458 (39%), Positives = 271/458 (59%), Gaps = 5/458 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +++       +F+ +P  N +S   +I  +A+    E+A+     +    + PS  +  S
Sbjct: 364 QNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTS 423

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
              + + +E L  GKQ+H+ A K G Q N +V +A++ LY K  SI    ++F+     +
Sbjct: 424 SFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKD 483

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
            VSY + +  L++   F++A  +F  MP  +VVSW  +I   +Q  +  EAV +F  ML 
Sbjct: 484 TVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLH 543

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           E  +PN   L   +  + N+ A  +G+  H  A+K      + V N+L+S Y KC S  D
Sbjct: 544 ERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-AD 602

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           SL VFD + ER+I TWN +I GYAQ+G G EAI  ++ M   G+ PN VT +GLL AC+H
Sbjct: 603 SLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSH 662

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +GLV++G+ +F ++   D G L P  EHYACMVDLL R+G  + A+ F+YD+P +P    
Sbjct: 663 SGLVDEGHQFF-KSMSSDYG-LTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVI 720

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ALLG C+IH NVE+G  AA ++ +++P +  +YVMLSN  S  G WD V+ +R+ MKE
Sbjct: 721 WSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKE 780

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +G+ + PGCSW++IK+K+H FVTGD  H     IYA L
Sbjct: 781 RGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATL 818



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 71/379 (18%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+ +P+ N VS T +I  +     +  A  +F  ML   + P +    SV+ +   L  
Sbjct: 179 LFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGK 238

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIK-LSSIEEATRVFEDTHNPN--------- 173
             + + +H    K G + +V VG+AIL+ Y K ++ ++ A + FE     N         
Sbjct: 239 PGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIA 298

Query: 174 ----------------------VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA- 210
                                 V S T+M+ GL +  R +DA  LF ++   NVVSWNA 
Sbjct: 299 ALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAM 358

Query: 211 ------------------------------MIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                                         MI GY++ GR+E+A+     + R+G++P+ 
Sbjct: 359 ITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSL 418

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           S+L  +  A +NI AL  GK  H+ AVK   + + +V N+LI+ Y K  S+     +FD+
Sbjct: 419 SSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDR 478

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG----L 356
           +T ++ V++N+ +    QN   +EA + F  M      P+ V+   ++ AC         
Sbjct: 479 MTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEA 534

Query: 357 VEKGYSYFSQAKLEDPGML 375
           VE   S   + +L +P +L
Sbjct: 535 VEIFRSMLHERELPNPPIL 553



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 11/278 (3%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           N    +A++  Y++   I  A ++F+   + +V S+ TM+ G    +  E+A  LF+ MP
Sbjct: 125 NTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMP 184

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            RN VSW  MI GY    ++  A ++F  ML EG+ P    L   + A  ++   G+ +S
Sbjct: 185 ERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILES 244

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL-VFDKLTERNIVTWNAVICGYAQNG 320
            H    K   + DV VG ++++ Y K  +M DS +  F+ +  RN  TW+ +I   +Q G
Sbjct: 245 IHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAG 304

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
           R ++A   ++R  +  +      L GL       G ++     F Q  + +P ++    +
Sbjct: 305 RIDDAFAVYQRDPLKSVPSRTSMLTGLA----RYGRIDDAKILFDQ--IHEPNVVS---W 355

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             M+    ++    EA++    +PF   I  W  ++ G
Sbjct: 356 NAMITGYMQNEMVDEAEDLFNRMPFRNTIS-WAGMIAG 392



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 29/211 (13%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P   + +  I  L +  R  +A ++F  MP R++++WN+MI  Y   G  +   +L   
Sbjct: 30  SPGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADA 89

Query: 231 M----LREGLVPNHSTLPCAIIAAANIAALGMG-------KSFHACAVK----------- 268
           +    LR G +          +  A     GMG        +   C V+           
Sbjct: 90  ISGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLF 149

Query: 269 -FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA---QNGRGEE 324
             +   DV   N++++ Y     ME++  +F+++ ERN V+W  +I GY    Q+GR   
Sbjct: 150 DAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR--- 206

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           A + F  M   G+ P    L+ +L A  H G
Sbjct: 207 AWDMFRTMLCEGMTPEQPNLVSVLSAVRHLG 237


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 174/459 (37%), Positives = 275/459 (59%), Gaps = 5/459 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E D+     ++FDE+P  N VS + +I R+ +  + EE++ LF RM+    +P+   F S
Sbjct: 262 EMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSS 321

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++ +  ++E L  G  +H   TK+G + +VFV S+++D+Y K    ++   +F+     N
Sbjct: 322 ILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKN 381

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           +VS+  M+ G       E+A  LF  MP RN VSW+A+I G+    + +E   +F EM+ 
Sbjct: 382 MVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMIL 441

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G +PN ST    + A A+ A+L  GK+ H   VK   + D +VG +L   YAK G +E 
Sbjct: 442 LGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIES 501

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACN 352
           S  VF+++ ++N V+W A+I G A++G  EE++  FE M + + I PN V  L +L+AC+
Sbjct: 502 SKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACS 561

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H+GLV+KG  YF+   +E    LKP+  H+ C+VD+LSR+GR  EA+EF+Y +PF P   
Sbjct: 562 HSGLVDKGLWYFNS--MEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETN 619

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL GC+ + N EL E  A ++  +  ++ + YV+LSN  + AG+W +V  +R+ MK
Sbjct: 620 AWAALLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMK 679

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            KG+ +  GCSW+EI+ +VH F + D  H  + EIY +L
Sbjct: 680 AKGLKKSGGCSWVEIRDRVHSFYSEDGAHSQSAEIYEIL 718



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 193/387 (49%), Gaps = 37/387 (9%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+  P  NVVS T  I  + +     EA+ LF ++L   ++P++ TF SV+ +   L D 
Sbjct: 141 FERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDF 200

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            LG  +     K G + ++ V ++++ L +++  I  A  VF+     +VVS+T ++   
Sbjct: 201 GLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLY 260

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           ++ +   +A ++F EMP RN VSW+AMI  Y Q+G  EE++ LF  M++EG  PN S   
Sbjct: 261 VEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFS 320

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + A A++ AL  G + H    K   + DVFV +SLI  Y KCG  +D   +FD + E+
Sbjct: 321 SILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEK 380

Query: 305 NIVTWNAVICGYAQNGRGEEA-------------------------------IEFFERMR 333
           N+V+WNA++ GY+ NG  EEA                                E F  M 
Sbjct: 381 NMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMI 440

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSG 391
           + G  PN  T   LL AC  T  ++KG +     K+   G ++ + Y    + D+ ++SG
Sbjct: 441 LLGEIPNKSTFSSLLCACASTASLDKGKNL--HGKIVKLG-IQCDTYVGTALTDMYAKSG 497

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGG 418
             + +K+    +P    +  W A++ G
Sbjct: 498 DIESSKKVFNRMPKKNEVS-WTAMIQG 523



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 157/323 (48%), Gaps = 39/323 (12%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           ++ V + ++   ++  +++EA ++F++    N +S+T +I G +K  R  +++  F+  P
Sbjct: 86  DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNP 145

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            +NVVSW A I GY Q G + EA+ LFI++L   + PN  T    + A AN+   G+G S
Sbjct: 146 FQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMS 205

Query: 262 FHACAVKFLGKLDVFVGNSLIS-------------------------------FYAKCGS 290
                VK   + D+ V NSLI+                                Y +   
Sbjct: 206 VLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDE 265

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + ++  +FD++ +RN V+W+A+I  Y Q+G  EE++  F RM   G +PN      +L A
Sbjct: 266 LGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSA 325

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
                 ++ G   + + ++   E    +     + ++D+  + G  K+ + FL+D   + 
Sbjct: 326 LASVEALQAGMNIHGHVTKIGFEKDVFVS----SSLIDMYCKCGETKDGR-FLFDTILEK 380

Query: 408 GIGFWKALLGGCQIHSNVELGEF 430
            +  W A++GG  ++ ++E  ++
Sbjct: 381 NMVSWNAMVGGYSLNGHMEEAKY 403



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 122/323 (37%), Gaps = 92/323 (28%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G  LHA   K G+ S  ++   +L +Y+      EA ++ +D    ++V +         
Sbjct: 40  GSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDGFDLVVH--------- 90

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                                 N MI    Q G  +EA  LF EM +   +         
Sbjct: 91  ----------------------NCMISANVQRGNLDEARKLFDEMPQTNEIS-------- 120

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
                                            +LIS + K G + +S+  F++   +N+
Sbjct: 121 -------------------------------WTALISGFMKYGRVRESMWYFERNPFQNV 149

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           V+W A I GY QNG   EA++ F ++  + ++PN VT   ++ AC + G    G S    
Sbjct: 150 VSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVL-- 207

Query: 367 AKLEDPGMLKPEHYA-------CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
                 G++    Y         ++ L  R G    A+E ++D   +  +  W A+L   
Sbjct: 208 ------GLIVKTGYEHDLAVSNSLITLCLRMGEIHLARE-VFDRMEEKDVVSWTAIL--- 257

Query: 420 QIHSNV-ELGEFAARRILALDPE 441
            ++  + ELGE  ARRI    P+
Sbjct: 258 DLYVEMDELGE--ARRIFDEMPQ 278



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 31/247 (12%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFS---- 59
           LLC C S+ SL+K   LH                K+    I+ D+    + +D ++    
Sbjct: 454 LLCACASTASLDKGKNLHG---------------KIVKLGIQCDTYVGTALTDMYAKSGD 498

Query: 60  --SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-LLLNIRPSEFTFGSVI- 115
             S  +VF+ +P  N VS T +I   A+    EE++ LF  M    +I P+E  F +V+ 
Sbjct: 499 IESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLF 558

Query: 116 -PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR-VFEDTHNPN 173
             S + L D  L    ++     GL+      + ++D+  +   + EA   ++     P 
Sbjct: 559 ACSHSGLVDKGLW-YFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPE 617

Query: 174 VVSYTTMI--CGLLKRERFED--ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
             ++  ++  C   K E   +  A KL+ EM  +N   +  +   Y+  GR  + + +  
Sbjct: 618 TNAWAALLSGCKTYKNEELAERVAGKLW-EMAEKNCAGYVLLSNIYASAGRWRDVLKVRK 676

Query: 230 EMLREGL 236
            M  +GL
Sbjct: 677 LMKAKGL 683


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 171/459 (37%), Positives = 274/459 (59%), Gaps = 4/459 (0%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG    +  S  QVFD + + N VS T++IG  A+    EEA+ LF++M  + +   +FT
Sbjct: 294 CG----RLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFT 349

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             +V+    + +D+++G+QLHA     GL S+V V +A++ +Y K   + +A   FE   
Sbjct: 350 LATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMP 409

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             +++S+T MI    +    E A + F +MP RNV+SWN+M+  Y Q G  EE + ++I+
Sbjct: 410 IRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQ 469

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLREG+  +  T   +I A A++A L +G    A A K     +V V NS+++ Y++CG 
Sbjct: 470 MLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQ 529

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E++  +F  +  +N+V+WNA++ GYAQNG+G + IE FE+M   G  P+ ++ + +L  
Sbjct: 530 IEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSG 589

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H+G V +G  YF     +       EH+ CMVDLL R+G+ ++AK  +  +PF P   
Sbjct: 590 CSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAA 649

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL  C+IH N +L E A + +L LD E   SY +L+N  S +GK   V+N+R+ M+
Sbjct: 650 IWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMR 709

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +KG+ + PGCSWIE+ ++VHVF   D NH    +++ +L
Sbjct: 710 DKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDVHRML 748



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/311 (36%), Positives = 160/311 (51%), Gaps = 13/311 (4%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNI 104
           +CG  SD +    +VF  +   NV S  T+I  FA      EA  LF +M     +  N 
Sbjct: 51  NCGLISDAY----RVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNS 106

Query: 105 RPSEF----TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
             S +       + I +S +L  L L  QLH +A K     +  V +++LD+YIK  +++
Sbjct: 107 MMSGYFHNGELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMD 166

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
            A +VF  T NP++  + +MI G  K    + AL+LF +MP R+ VSWN MI   SQ G 
Sbjct: 167 FAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGF 226

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
             E +N F+EM  +G  PN  T    + A  +I  L  G   HA  V+    LDV+ G  
Sbjct: 227 GAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCG 286

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI  YAKCG +E +  VFD LTE N V+W ++I G AQ G  EEA+  F +MR   +  +
Sbjct: 287 LIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASD 346

Query: 341 GVTLLGLLWAC 351
             TL  +L  C
Sbjct: 347 QFTLATVLGVC 357



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 155/316 (49%), Gaps = 25/316 (7%)

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
            +L  + + ++LHA    +GL+S++F+ + +L++Y     I +A RVF     PNV S+ 
Sbjct: 15  ASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWN 74

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN-------LFIEM 231
           TMI G     +  +A KLF++MP R+ VSWN+M+ GY   G  E  +        L + +
Sbjct: 75  TMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLAL 134

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC-AVKFLGKL-------DVFVGNSLIS 283
              G           I      + L M   +  C A+ F  K+        +F  NS+I 
Sbjct: 135 QLHGFA---EKFDFGIDTCVETSVLDM---YIKCGAMDFAQKVFCRTPNPSLFCWNSMIY 188

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+K GS++ +L +F K+ ER+ V+WN +I   +Q+G G E +  F  M   G RPN +T
Sbjct: 189 GYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMT 248

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYD 402
              +L AC     +E G    ++    +P +    +  C ++D+ ++ GR + A++    
Sbjct: 249 YASVLSACTSIYDLEWGAHLHARIVRMEPCL--DVYAGCGLIDMYAKCGRLESARQVFDG 306

Query: 403 LPFDPGIGFWKALLGG 418
           L     +  W +L+GG
Sbjct: 307 LTEHNAVS-WTSLIGG 321



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  ++  S++       + FD++P+ NV+S  +++  + ++ ++EE + ++ +ML   ++
Sbjct: 417 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
               TF + I +   L  L LG Q+ A A K+G  SNV V ++++ +Y +   IEEA ++
Sbjct: 477 TDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKM 536

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRN 221
           F      N+VS+  M+ G  +  +    +++F++M +     + +S+ +++ G S +G  
Sbjct: 537 FSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFV 596

Query: 222 EEAVNLFIEMLRE-GLVPNHSTLPCAI 247
            E    F+ M ++ G+ P      C +
Sbjct: 597 SEGQYYFLSMTKDHGISPMSEHFVCMV 623


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  344 bits (883), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 177/449 (39%), Positives = 266/449 (59%), Gaps = 31/449 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FD +P+ + +S TTII    +   ++EA+  F  M +      +FTFGSV+ +     
Sbjct: 225 QLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFL 284

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L+ GKQ+HA+  +   Q N+FVGSA+LD+Y K  +++ A  VF                
Sbjct: 285 ALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVF---------------- 328

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                          ++M H+NV+SW AM+ GY Q G +EEAV +F +M R  + P+  T
Sbjct: 329 ---------------RKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFT 373

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I + AN+A+L  G  FH  A+       V V N+LI+ Y KCGS+E +  +F ++ 
Sbjct: 374 LGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMK 433

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R+ V+W A++ GYAQ G+  E I  FE M  +GI P+GVT +G+L AC+  GLVEKGY 
Sbjct: 434 IRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYH 493

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF     E      P+HY CM+DLLSR+GR +EAK F+  +PF P    W  LL  C+++
Sbjct: 494 YFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLN 553

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+E+G++AA  +  L+P++ +SY++LS+  +  GKWD+V+ +R+ M+E G+ + PG SW
Sbjct: 554 GNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSW 613

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
           I+ K+KVH+F   DR+   +D+IYA L S
Sbjct: 614 IKYKNKVHIFSADDRSSPFSDQIYAKLES 642



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 200/371 (53%), Gaps = 3/371 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPS 107
           +S  S+      + +VFD +P+ +VVS  +++  +A      E++ +++ ML   ++  +
Sbjct: 78  LSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLN 137

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             TF +++  S+    ++LG+Q+H    K G QS +FVGS ++D+Y K   I +A R+FE
Sbjct: 138 RITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFE 197

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           +    N+V Y TMI GLL+     +A +LF  MP ++ +SW  +I G +Q G  +EAV+ 
Sbjct: 198 EIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDK 257

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F EM  EG   +  T    + A     AL  GK  HA  ++   + ++FVG++L+  Y K
Sbjct: 258 FKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCK 317

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C +++ +  VF K+  +N+++W A++ GY QNG  EEA+  F  M+ N I P+  TL  +
Sbjct: 318 CRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSV 377

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           + +C +   +E+G  +  QA L    +        ++ L  + G  + A +  +++    
Sbjct: 378 ISSCANLASLEEGAQFHGQA-LASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRD 436

Query: 408 GIGFWKALLGG 418
            +  W AL+ G
Sbjct: 437 EVS-WTALVSG 446



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 134/279 (48%), Gaps = 35/279 (12%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K+LH    +       F+ + +++ Y KL  ++ A  VF+    PN+ S+ T++    K 
Sbjct: 25  KKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKL 84

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP-NHSTLPCA 246
              +D  ++F  MP+ +VVSWN+++ GY+  G   E+V ++  ML++G V  N  T    
Sbjct: 85  GYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTM 144

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           +I ++N   + +G+  H    KF  +  +FVG+ L+  YAK G + D+  +F+++ E+NI
Sbjct: 145 LILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNI 204

Query: 307 V-------------------------------TWNAVICGYAQNGRGEEAIEFFERMRIN 335
           V                               +W  +I G  QNG  +EA++ F+ M I 
Sbjct: 205 VVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIE 264

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLED 371
           G   +  T   +L AC     +++G   ++Y  +   +D
Sbjct: 265 GFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQD 303


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  344 bits (883), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 180/473 (38%), Positives = 283/473 (59%), Gaps = 4/473 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VSCG    +  +  ++FDE    ++VS  +II  + +    +EA  L+ +M  LN+ P E
Sbjct: 201 VSCG----ELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDE 256

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T   V+ +S  LE+L LG++LH    ++GL   V + +A++D+YIK  +IE A  +FE+
Sbjct: 257 VTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFEN 316

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                VVS+TTM+ G  K    E A++LF EMP ++VV WNA+IGG+ Q  R++EA+ LF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM    + P+  T+   + A + + AL +G   H    K    ++V +G +L+  YAKC
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G+++ ++ VF+++  RN +TW A+ICG A +G+   AI +F  M   G+ P+ +T +G+L
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC H GLV++G  YF Q   +     K +HY+C+VDLL R+G  +EA+E +  +PF+P 
Sbjct: 497 SACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD 556

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W AL  G +IH NV +GE AA ++L LDP D   YV+L+N    A  W+    +R+ 
Sbjct: 557 AVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKM 616

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
           M+E+G+ + PGCS IE+   V+ F+  D++H  +++IY  L   T QI   E+
Sbjct: 617 MEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQIEVIEV 669



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 1/177 (0%)

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           +S     C + +    +   K+     + NV SWN  I GY ++     AV L+  MLR+
Sbjct: 89  LSRLVAFCAISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRK 148

Query: 235 G-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           G  +P++ T P      A  +            ++     D+FV N++I     CG +  
Sbjct: 149 GSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLA 208

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +FD+   R++V+WN++I GY + G  +EA + + +M    + P+ VT++G++ A
Sbjct: 209 ARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSA 265


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 180/473 (38%), Positives = 283/473 (59%), Gaps = 4/473 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VSCG    +  +  ++FDE    ++VS  +II  + +    +EA  L+ +M  LN+ P E
Sbjct: 201 VSCG----ELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDE 256

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T   V+ +S  LE+L LG++LH    ++GL   V + +A++D+YIK  +IE A  +FE+
Sbjct: 257 VTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFEN 316

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                VVS+TTM+ G  K    E A++LF EMP ++VV WNA+IGG+ Q  R++EA+ LF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM    + P+  T+   + A + + AL +G   H    K    ++V +G +L+  YAKC
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G+++ ++ VF+++  RN +TW A+ICG A +G+   AI +F  M   G+ P+ +T +G+L
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC H GLV++G  YF Q   +     K +HY+C+VDLL R+G  +EA+E +  +PF+P 
Sbjct: 497 SACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD 556

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W AL  G +IH NV +GE AA ++L LDP D   YV+L+N    A  W+    +R+ 
Sbjct: 557 AVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKM 616

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
           M+E+G+ + PGCS IE+   V+ F+  D++H  +++IY  L   T QI   E+
Sbjct: 617 MEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQIEVIEV 669



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 1/177 (0%)

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           +S     C + +    +   K+     + N  SWN  I GY ++     AV L+  MLR+
Sbjct: 89  LSRLVAFCAISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRK 148

Query: 235 G-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           G  +P++ T P      A  +            ++     D+FV N++I     CG +  
Sbjct: 149 GSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLA 208

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +FD+   R++V+WN++I GY + G  +EA + + +M    + P+ VT++G++ A
Sbjct: 209 ARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSA 265


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 293/524 (55%), Gaps = 18/524 (3%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + LL  C +  +LN+  ++HS      +ET       L T   + + +    E+      
Sbjct: 284 VSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARET------ 337

Query: 62  HQVFDEVPDLNVVSATTIIGRFAK-----QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
              FD +   +V+S + +I  +A+     +   +E   L  RM    + P++ TF S++ 
Sbjct: 338 ---FDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILK 394

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           + +    L  G+Q+HA  +KVG +S+  + +AI ++Y K  SI EA +VF    N NVV+
Sbjct: 395 ACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVA 454

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + +++   +K      A K+F EM  RNVVSWN MI GY+Q+G   +   L   M  EG 
Sbjct: 455 WASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGF 514

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            P+  T+   + A   ++AL  GK  HA AVK   + D  V  SLI  Y+KCG + ++  
Sbjct: 515 QPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEART 574

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VFDK++ R+ V WNA++ GY Q+G G EA++ F+RM    + PN +T   ++ AC   GL
Sbjct: 575 VFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGL 634

Query: 357 VEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           V++G   F    +++   +KP  +HY CMVDLL R+GR +EA+EF+  +P +P I  W A
Sbjct: 635 VQEGREIFR--IMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHA 692

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG C+ H NV+L E+AA  IL L+P + S YV LSN  + AG+WD+ + +R+ M +KG+
Sbjct: 693 LLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGL 752

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            +  G S IEI  ++H FV  D  H   D I+A L   T++++E
Sbjct: 753 KKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKE 796



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 221/505 (43%), Gaps = 75/505 (14%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + +L  C +   L K  ++H++     +ET           A+ T  ++  S+  + S  
Sbjct: 183 LSILKACNNYSMLEKAREIHTVVKASGMETD---------VAVATALITMYSKCGEISLA 233

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++F ++ + NVVS T II   A+     EA  L+ +ML   I P+  TF S++ S    
Sbjct: 234 CEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTP 293

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           E LN G+++H+  ++ GL+++V V +A++ +Y K + I++A   F+     +V+S++ MI
Sbjct: 294 EALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMI 353

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G  +                           GY      +E   L   M REG+ PN  
Sbjct: 354 AGYAQ--------------------------SGYQDKESLDEVFQLLERMRREGVFPNKV 387

Query: 242 TLPCAIIAAANIAALGMGKSFHA-----------------------C-----AVKFLGKL 273
           T    + A +   AL  G+  HA                       C     A +   K+
Sbjct: 388 TFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKM 447

Query: 274 D---VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
           +   V    SL++ Y KCG +  +  VF +++ RN+V+WN +I GYAQ+G   +  E   
Sbjct: 448 ENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLS 507

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA---KLEDPGMLKPEHYACMVDLL 387
            M++ G +P+ VT++ +L AC     +E+G    ++A    LE   ++       ++ + 
Sbjct: 508 SMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATS----LIGMY 563

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS-NVELGEFAARRILALDPEDVSSY 446
           S+ G   EA+  ++D   +     W A+L G   H    E  +   R +    P +  ++
Sbjct: 564 SKCGEVTEART-VFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITF 622

Query: 447 VMLSNALSVAGKWDNVSNIRREMKE 471
             + +A   AG       I R M+E
Sbjct: 623 TAVISACGRAGLVQEGREIFRIMQE 647



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 178/366 (48%), Gaps = 44/366 (12%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +SV QVF  +   +VV+ +++I  +A  +H  +A   F RM   NI P+  TF S++ + 
Sbjct: 130 ASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKAC 189

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
                L   +++H      G++++V V +A++ +Y K   I  A  +F+     NVVS+T
Sbjct: 190 NNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWT 249

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                                          A+I   +Q  +  EA  L+ +ML+ G+ P
Sbjct: 250 -------------------------------AIIQANAQHRKLNEAFELYEKMLQAGISP 278

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           N  T    + +     AL  G+  H+   +   + DV V N+LI+ Y KC  ++D+   F
Sbjct: 279 NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETF 338

Query: 299 DKLTERNIVTWNAVICGYAQNGRG-----EEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           D++++R++++W+A+I GYAQ+G       +E  +  ERMR  G+ PN VT + +L AC+ 
Sbjct: 339 DRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSV 398

Query: 354 TGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            G +E+G   ++  S+   E    L+      + ++ ++ G   EA++    +  +  + 
Sbjct: 399 HGALEQGRQIHAEISKVGFESDRSLQ----TAIFNMYAKCGSIYEAEQVFSKME-NKNVV 453

Query: 411 FWKALL 416
            W +LL
Sbjct: 454 AWASLL 459



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 154/346 (44%), Gaps = 47/346 (13%)

Query: 80  IGRFAKQHHYEEAIYLF----SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWAT 135
           + R  K    +EAI L      R LL+N      T+G +I     L     GK +H    
Sbjct: 50  VWRLCKAGRLKEAIQLLGIIKQRGLLVNSN----TYGCIIEHCAKLRRFEDGKMVHKQLD 105

Query: 136 KVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALK 195
           ++GL  ++++G+++++ Y K   +    +VF                             
Sbjct: 106 ELGLAIDIYLGNSLINFYSKFGDVASVEQVF----------------------------- 136

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
             + M  R+VV+W++MI  Y+      +A + F  M    + PN  T    + A  N + 
Sbjct: 137 --RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSM 194

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           L   +  H        + DV V  +LI+ Y+KCG +  +  +F K+ ERN+V+W A+I  
Sbjct: 195 LEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQA 254

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDP 372
            AQ+ +  EA E +E+M   GI PN VT + LL +CN    + +G   +S+ S+  LE  
Sbjct: 255 NAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETD 314

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            ++       ++ +  +    ++A+E  +D      +  W A++ G
Sbjct: 315 VVVAN----ALITMYCKCNCIQDARE-TFDRMSKRDVISWSAMIAG 355



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 125/260 (48%), Gaps = 5/260 (1%)

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
           + GR +EA+ L   + + GL+ N +T  C I   A +     GK  H    +    +D++
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIY 114

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +GNSLI+FY+K G +     VF ++T R++VTW+++I  YA N    +A + FERM+   
Sbjct: 115 LGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKE 395
           I PN +T L +L ACN+  ++EK     +  K    GM      A  ++ + S+ G    
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKA--SGMETDVAVATALITMYSKCGEISL 232

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNV-ELGEFAARRILALDPEDVSSYVMLSNALS 454
           A E    +  +  +  W A++     H  + E  E   + + A    +  ++V L N+ +
Sbjct: 233 ACEIFQKMK-ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291

Query: 455 VAGKWDNVSNIRREMKEKGM 474
                +    I   + E+G+
Sbjct: 292 TPEALNRGRRIHSHISERGL 311


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  343 bits (881), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 268/448 (59%), Gaps = 3/448 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD++P  N +S   +I  +A+    EEA+ L   +    + PS  +  S+  + + + 
Sbjct: 374 ELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIV 433

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G Q+H+ A KVG Q N F  +A++ +Y K  ++E A +VF      ++VS+ + + 
Sbjct: 434 ALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLA 493

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            L++ +  ++A   F  M  R+ VSW  +I  Y+   ++ EA+  F  M  E  +PN   
Sbjct: 494 ALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPI 553

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   +    ++ A  +G+  H  A+K     ++ V N+LIS Y KCG   DS  +FD + 
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLME 612

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER+I TWN +I GYAQ+G G EAI+ ++ M   G+ PN VT +GLL AC+H GLV++G+ 
Sbjct: 613 ERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWK 672

Query: 363 YFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           +F ++  +D G+   PEHYACMVDLL R+G  + A++F+YD+P +P    W ALLG C+I
Sbjct: 673 FF-KSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKI 731

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N E+G+ AA ++  ++P +  +YVMLSN  S  G W  V+ +R+ MK++G+ + PGCS
Sbjct: 732 HKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCS 791

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           W +IK K+H FVTGD+ H   +EI A L
Sbjct: 792 WTQIKDKMHSFVTGDKQHEQIEEIVATL 819



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 143/265 (53%), Gaps = 15/265 (5%)

Query: 72  NVVSATTIIGRFAKQHH-YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
           +VV  T I+  +++     + AI  F  M    I  +E+T+ ++I +      L+ G ++
Sbjct: 258 DVVIGTAILNVYSRDTSVLDTAIKFFESM----IERNEYTWSTMIAA------LSHGGRI 307

Query: 131 HAWATKVGLQS---NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            A A  V  +    ++   +A++    +   I++A  +FE    P VVS+  +I G ++ 
Sbjct: 308 DA-AIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQN 366

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
               +A +LF +MP RN +SW  MI GY+Q GR+EEA+ L  E+ R G++P+ S+L    
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A +NI AL  G   H+ AVK   + + F  N+LI+ Y KC +ME +  VF ++  ++IV
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486

Query: 308 TWNAVICGYAQNGRGEEAIEFFERM 332
           +WN+ +    QN   +EA   F+ M
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNM 511



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 176/364 (48%), Gaps = 21/364 (5%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +     +VFD +P  ++++  ++I  +      + A  L+  +   N+R      G+++ 
Sbjct: 49  RVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRT-----GAILL 103

Query: 117 SSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
           S        LG+ L A     G L+ N    +A++  Y++   I  A R+F+   + +V 
Sbjct: 104 SGYG----RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS 159

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+ +M+ G     +  DA  LF++MP RN+VSW  MI GY +   + +A ++F +M REG
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L+P+ S    A+ A   +  L + +S    A+K   + DV +G ++++ Y++  S+ D+ 
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 296 L-VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           +  F+ + ERN  TW+ +I   +  GR + AI  +ER  +  I      + GL       
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLA----QC 335

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G ++     F Q  + +P ++    +  ++    ++G   EAKE    +PF   I  W  
Sbjct: 336 GRIDDARILFEQ--IPEPIVVS---WNALITGYMQNGMVNEAKELFDKMPFRNTIS-WAG 389

Query: 415 LLGG 418
           ++ G
Sbjct: 390 MIAG 393



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 153/305 (50%), Gaps = 40/305 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++P+ N+VS T +I  + +  ++ +A  +F +M    + P +  F S + +   L +
Sbjct: 180 LFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGN 239

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI-EEATRVFEDTHNPNVVSYTTMIC 182
           L++ + L   A K G + +V +G+AIL++Y + +S+ + A + FE     N  +++TMI 
Sbjct: 240 LDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIA 299

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            L    R + A+ +++  P +++    A+I G +Q GR ++A  LF              
Sbjct: 300 ALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILF------------EQ 347

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +P  I+ +                            N+LI+ Y + G + ++  +FDK+ 
Sbjct: 348 IPEPIVVS---------------------------WNALITGYMQNGMVNEAKELFDKMP 380

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            RN ++W  +I GYAQNGR EEA+   + +  +G+ P+  +L  + +AC++   +E G  
Sbjct: 381 FRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQ 440

Query: 363 YFSQA 367
             S A
Sbjct: 441 VHSLA 445



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 137/353 (38%), Gaps = 78/353 (22%)

Query: 11  SLSLNKLSKLHSLAPNYLIETQKASVQKLE------TPAIRTDSVSCGS------ESDKF 58
           SL++    + +S A N LI T     + +E      +  +  D VS  S      ++D  
Sbjct: 443 SLAVKVGCQFNSFACNALI-TMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLL 501

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
                 FD +   + VS TTII  +A      EA+  F  M   +  P+      ++   
Sbjct: 502 DEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVC 561

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
            +L    +G+Q+H  A K+G+ S + V +A++ +Y K                       
Sbjct: 562 GSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFK----------------------- 598

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
              CG        D+ ++F  M  R++ +WN +I GY+Q G   EA+ ++  M   G++P
Sbjct: 599 ---CGC------ADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLP 649

Query: 239 NHSTLPCAIIAAANIAALGMGKSF----------------HACAVKFLGKLDVFVGNSLI 282
           N  T    + A ++   +  G  F                +AC V  LG+     G    
Sbjct: 650 NEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGA--- 706

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVI--CGYAQNGR-GEEAIEFFERM 332
                         ++D   E + V W+A++  C   +N   G+ A E   R+
Sbjct: 707 -----------EQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRI 748



 Score = 45.8 bits (107), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 23/205 (11%)

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
           G+L+V   ++ I    + G + ++  VFD +  R+I+ WN++I  Y  NG  + A + ++
Sbjct: 30  GELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD 89

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLS 388
            +    +R   + L G        G V +    F        GML+    A   M+    
Sbjct: 90  AISGGNMRTGAILLSGY----GRLGRVLEARRVFD-------GMLERNTVAWNAMISCYV 138

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED--VSSY 446
           ++G    A+     +P    +  W ++L G   HS   L    AR +    PE   VS  
Sbjct: 139 QNGDITMARRLFDAMP-SRDVSSWNSMLTG-YCHS---LQMVDARNLFEKMPERNLVSWT 193

Query: 447 VMLSNALSVA--GK-WDNVSNIRRE 468
           VM+S    +   GK WD    + RE
Sbjct: 194 VMISGYGRIENHGKAWDIFCKMHRE 218


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  343 bits (881), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 171/448 (38%), Positives = 268/448 (59%), Gaps = 3/448 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD++P  N +S   +I  +A+    EEA+ L   +    + PS  +  S+  + + + 
Sbjct: 374 ELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIV 433

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G Q+H+ A KVG Q N F  +A++ +Y K  ++E A +VF      ++VS+ + + 
Sbjct: 434 ALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLA 493

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            L++ +  ++A   F  M  R+ VSW  +I  Y+   ++ EA+  F  M  E  +PN   
Sbjct: 494 ALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPI 553

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   +    ++ A  +G+  H  A+K     ++ V N+LIS Y KCG   DS  +FD + 
Sbjct: 554 LTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGC-ADSRRIFDLME 612

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER+I TWN +I GYAQ+G G EAI+ ++ M   G+ PN VT +GLL AC+H GLV++G+ 
Sbjct: 613 ERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWK 672

Query: 363 YFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           +F ++  +D G+   PEHYACMVDLL R+G  + A++F+YD+P +P    W ALLG C+I
Sbjct: 673 FF-KSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKI 731

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N E+G+ AA ++  ++P +  +YVMLSN  S  G W  V+ +R+ MK++G+ + PGCS
Sbjct: 732 HKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCS 791

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           W +IK K+H FVTGD+ H   +EI A L
Sbjct: 792 WTQIKDKMHSFVTGDKQHEQIEEIVATL 819



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 143/265 (53%), Gaps = 15/265 (5%)

Query: 72  NVVSATTIIGRFAKQHH-YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
           +VV  T I+  +++     + AI  F  M    I  +E+T+ ++I +      L+ G ++
Sbjct: 258 DVVIGTAILNVYSRDTSVLDTAIKFFESM----IERNEYTWSTMIAA------LSHGGRI 307

Query: 131 HAWATKVGLQS---NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            A A  V  +    ++   +A++    +   I++A  +FE    P VVS+  +I G ++ 
Sbjct: 308 DA-AIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQN 366

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
               +A +LF +MP RN +SW  MI GY+Q GR+EEA+ L  E+ R G++P+ S+L    
Sbjct: 367 GMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIF 426

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A +NI AL  G   H+ AVK   + + F  N+LI+ Y KC +ME +  VF ++  ++IV
Sbjct: 427 FACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIV 486

Query: 308 TWNAVICGYAQNGRGEEAIEFFERM 332
           +WN+ +    QN   +EA   F+ M
Sbjct: 487 SWNSFLAALVQNDLLDEARNTFDNM 511



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 176/364 (48%), Gaps = 21/364 (5%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +     +VFD +P  ++++  ++I  +      + A  L+  +   N+R      G+++ 
Sbjct: 49  RVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRT-----GAILL 103

Query: 117 SSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
           S        LG+ L A     G L+ N    +A++  Y++   I  A R+F+   + +V 
Sbjct: 104 SGYG----RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVS 159

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+ +M+ G     +  DA  LF++MP RN+VSW  MI GY +   + +A ++F +M REG
Sbjct: 160 SWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREG 219

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L+P+ S    A+ A   +  L + +S    A+K   + DV +G ++++ Y++  S+ D+ 
Sbjct: 220 LLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTA 279

Query: 296 L-VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           +  F+ + ERN  TW+ +I   +  GR + AI  +ER  +  I      + GL       
Sbjct: 280 IKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLA----QC 335

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G ++     F Q  + +P ++    +  ++    ++G   EAKE    +PF   I  W  
Sbjct: 336 GRIDDARILFEQ--IPEPIVVS---WNALITGYMQNGMVNEAKELFDKMPFRNTIS-WAG 389

Query: 415 LLGG 418
           ++ G
Sbjct: 390 MIAG 393



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 153/305 (50%), Gaps = 40/305 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++P+ N+VS T +I  + +  ++ +A  +F +M    + P +  F S + +   L +
Sbjct: 180 LFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGN 239

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI-EEATRVFEDTHNPNVVSYTTMIC 182
           L++ + L   A K G + +V +G+AIL++Y + +S+ + A + FE     N  +++TMI 
Sbjct: 240 LDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIA 299

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            L    R + A+ +++  P +++    A+I G +Q GR ++A  LF              
Sbjct: 300 ALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILF------------EQ 347

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +P  I+ +                            N+LI+ Y + G + ++  +FDK+ 
Sbjct: 348 IPEPIVVS---------------------------WNALITGYMQNGMVNEAKELFDKMP 380

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            RN ++W  +I GYAQNGR EEA+   + +  +G+ P+  +L  + +AC++   +E G  
Sbjct: 381 FRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQ 440

Query: 363 YFSQA 367
             S A
Sbjct: 441 VHSLA 445



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 137/353 (38%), Gaps = 78/353 (22%)

Query: 11  SLSLNKLSKLHSLAPNYLIETQKASVQKLE------TPAIRTDSVSCGS------ESDKF 58
           SL++    + +S A N LI T     + +E      +  +  D VS  S      ++D  
Sbjct: 443 SLAVKVGCQFNSFACNALI-TMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLL 501

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
                 FD +   + VS TTII  +A      EA+  F  M   +  P+      ++   
Sbjct: 502 DEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVC 561

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
            +L    +G+Q+H  A K+G+ S + V +A++ +Y K                       
Sbjct: 562 GSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFK----------------------- 598

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
              CG        D+ ++F  M  R++ +WN +I GY+Q G   EA+ ++  M   G++P
Sbjct: 599 ---CGC------ADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLP 649

Query: 239 NHSTLPCAIIAAANIAALGMGKSF----------------HACAVKFLGKLDVFVGNSLI 282
           N  T    + A ++   +  G  F                +AC V  LG+     G    
Sbjct: 650 NEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGA--- 706

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVI--CGYAQNGR-GEEAIEFFERM 332
                         ++D   E + V W+A++  C   +N   G+ A E   R+
Sbjct: 707 -----------EQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRI 748



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 23/205 (11%)

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
           G+L+V   ++ I    + G + ++  VFD +  R+I+ WN++I  Y  NG  + A + ++
Sbjct: 30  GELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYD 89

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLS 388
            +    +R   + L G        G V +    F        GML+    A   M+    
Sbjct: 90  AISGGNMRTGAILLSGY----GRLGRVLEARRVFD-------GMLERNTVAWNAMISCYV 138

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED--VSSY 446
           ++G    A+     +P    +  W ++L G   HS   L    AR +    PE   VS  
Sbjct: 139 QNGDITMARRLFDAMP-SRDVSSWNSMLTG-YCHS---LQMVDARNLFEKMPERNLVSWT 193

Query: 447 VMLSNALSVA--GK-WDNVSNIRRE 468
           VM+S    +   GK WD    + RE
Sbjct: 194 VMISGYGRIENHGKAWDIFCKMHRE 218


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 274/457 (59%), Gaps = 38/457 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF E+P+ +VVS T +I  F  +  Y   + +F++ML     P+ +TF S++ S ++L 
Sbjct: 247 KVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 305

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D++LGKQ+HA   K  L  N FVG+A++D+Y K                           
Sbjct: 306 DVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK--------------------------- 338

Query: 183 GLLKRERF-EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                 RF EDA  +F  +  R++ +W  ++ GY+Q G+ E+AV  FI+M REG+ PN  
Sbjct: 339 -----NRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEF 393

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL  ++   + IA L  G+  H+ A+K     D+FV ++L+  YAKCG +ED+ +VFD L
Sbjct: 394 TLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL 453

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             R+ V+WN +ICGY+Q+G+G +A++ FE M   G  P+ VT +G+L AC+H GL+E+G 
Sbjct: 454 VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGK 513

Query: 362 SYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            +F+   L     + P  EHYACMVD+L R+G+F E + F+ ++     +  W+ +LG C
Sbjct: 514 KHFN--SLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGAC 571

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H N+E GE AA ++  L+PE  S+Y++LSN  +  G WD+V+N+R  M  +G+ + PG
Sbjct: 572 KMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPG 631

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           CSW+E+  +VHVF++ D +H    EI+  L+   +++
Sbjct: 632 CSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKL 668



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 187/430 (43%), Gaps = 73/430 (16%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QV +E+P  +V      +      +  +EA+ LF  M    IR ++F F S+I ++ +L 
Sbjct: 45  QVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLG 104

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D + G+ +HA   K G +S++ + +A + +Y+K  S+E   + F+     N+ S   ++ 
Sbjct: 105 DNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLS 164

Query: 183 GLLKRERFEDALKLFQEM------------------------------PHRNVVS----- 207
           G    E  +   ++  ++                               H  V+      
Sbjct: 165 GFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINP 224

Query: 208 ----WNAMIGGYSQTGRNEEAVNLFIE------------------------------MLR 233
               WN+++  Y++ G    A  +F E                              ML 
Sbjct: 225 DSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLA 284

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG  PN  T    + + ++++ + +GK  HA  VK     + FVG +L+  YAK   +ED
Sbjct: 285 EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLED 344

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +F++L +R++  W  ++ GYAQ+G+GE+A++ F +M+  G++PN  TL   L  C+ 
Sbjct: 345 AETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSR 404

Query: 354 TGLVEKGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
              ++ G    S A K    G +     + +VD+ ++ G  ++A E ++D         W
Sbjct: 405 IATLDSGRQLHSMAIKAGQSGDMFVA--SALVDMYAKCGCVEDA-EVVFDGLVSRDTVSW 461

Query: 413 KALLGGCQIH 422
             ++ G   H
Sbjct: 462 NTIICGYSQH 471



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 119/256 (46%), Gaps = 4/256 (1%)

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           RV ++   P+   +++++   +K E  + A ++ +EMP ++V  WN  +   +     +E
Sbjct: 14  RVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQE 73

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           AV LF  M    +  N       I AAA++     G+S HAC  K+  + D+ + N+ ++
Sbjct: 74  AVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVT 133

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y K  S+E+    F  +   N+ + N ++ G+      ++      ++ + G  PN  T
Sbjct: 134 MYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYT 193

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYD 402
            + +L  C   G + +G +   Q  +   G+    H +  +V++ ++ G    A +   +
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQ--VIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGE 251

Query: 403 LPFDPGIGFWKALLGG 418
           +P +  +  W AL+ G
Sbjct: 252 IP-ERDVVSWTALITG 266


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 178/469 (37%), Positives = 277/469 (59%), Gaps = 37/469 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S +     ++F+E+P  +++  + +I R+A+    +EA+ LF RM   ++ P+ FTF 
Sbjct: 283 AKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFA 342

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +  +   L+LGKQ+H+   K GL SNVFV +AI+D+Y K                 
Sbjct: 343 SVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAK----------------- 385

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG       E+++KLF+E+P RN V+WN +I GY Q G  E A+NLF  ML
Sbjct: 386 ---------CG-----EIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHML 431

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              + P   T    + A+A++AAL  G   H+  +K +   D  V NSLI  YAKCG + 
Sbjct: 432 EHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRIN 491

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+ L FDK+ +R+ V+WNA+ICGY+ +G   EA+  F+ M+    +PN +T +G+L AC+
Sbjct: 492 DARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACS 551

Query: 353 HTGLVEKGYSYF-SQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           + GL+ KG ++F S +K  D   +KP  EHY CMV LL R GRF EA + + ++ + P +
Sbjct: 552 NAGLLYKGQAHFESMSKDYD---IKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSV 608

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W+ALLG C IH  V+LG   A+ +L ++P D +++V+LSN  + AG+WDNV+ +R+ M
Sbjct: 609 MVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYM 668

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           ++K + + PG SW+E +  VH F  GD +H     I A+L    ++ R+
Sbjct: 669 QKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRD 717



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 153/298 (51%), Gaps = 31/298 (10%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S+      ++FDE+P  N +S  T+   +++ H + +A++   R+       + F F +
Sbjct: 82  QSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTT 141

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++    +++  +L   LHA   K+G  ++ FVG+A++D Y    +++ A  VF+D     
Sbjct: 142 LLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDD----- 196

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                  IC                    +++VSW  M+  Y++    EE++ LF +M  
Sbjct: 197 -------ICC-------------------KDMVSWTGMVACYAENCFYEESLQLFNQMRI 230

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G  PN+ T+  A+ +   + A  +GKS H CA+K     D+FVG +L+  YAK G + D
Sbjct: 231 MGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIID 290

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +  +F+++ + +++ W+ +I  YAQ+ R +EA++ F RMR   + PN  T   +L AC
Sbjct: 291 AQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQAC 348



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GK  H   +K    LD+F  N L++FY +  S++D+  +FD++ + N +++  +  GY++
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 319 NGRGEEAIEFFERMRINGIRPNG---VTLLGLL 348
           + +  +A+ F  R+   G   N     TLL LL
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLL 146


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 275/461 (59%), Gaps = 17/461 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+   + VS   II    +     E ++LF  ML   I P EFTFGSV+ + T   
Sbjct: 396 RVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG-G 454

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G ++H+   K G+ SN  VG +++D+Y K   IEEA ++         VS T    
Sbjct: 455 SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGT---- 510

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            + + E+  +  K  QEM     VSWN++I GY    ++E+A  LF  M+  G+ P+  T
Sbjct: 511 -MEELEKMHN--KRLQEM----CVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFT 563

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +   AN+A+ G+GK  HA  +K   + DV++ ++L+  Y+KCG + DS L+F+K  
Sbjct: 564 YATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSL 623

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R+ VTWNA+ICGYA +G+GEEAI+ FERM +  I+PN VT + +L AC H GL++KG  
Sbjct: 624 RRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLE 683

Query: 363 YFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF   K  D G L P+  HY+ MVD+L +SG+ K A E + ++PF+     W+ LLG C 
Sbjct: 684 YFYMMK-RDYG-LDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCT 741

Query: 421 IH-SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           IH +NVE+ E A   +L LDP+D S+Y +LSN  + AG W+ VS++RR M+   + + PG
Sbjct: 742 IHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPG 801

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           CSW+E+K ++HVF+ GD+ H   +EIY  L     +++ F+
Sbjct: 802 CSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFD 842



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 164/347 (47%), Gaps = 35/347 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++  +F    +VF  +P+ N VS + II    + +    A+  F  M  +N   S+  + 
Sbjct: 184 AKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYA 243

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ S  AL +L LG QLHA A K    ++  V +A LD+Y K  ++++A  +F+ + N 
Sbjct: 244 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENL 303

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N             R+                  S+NAMI GYSQ     +A+ LF  ++
Sbjct: 304 N-------------RQ------------------SYNAMITGYSQEEHGFKALLLFHRLM 332

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             GL  +  +L     A A +  L  G   +  A+K    LDV V N+ I  Y KC ++ 
Sbjct: 333 SSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALA 392

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++  VFD++  R+ V+WNA+I  + QNG+G E +  F  M  + I P+  T   +L AC 
Sbjct: 393 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACT 452

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKE 398
              L   GY     + +   GM       C ++D+ S+ G  +EA++
Sbjct: 453 GGSL---GYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 496



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 62/330 (18%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI-------- 104
           + S  F S   VFD +P  +VVS   +I  +AK ++  +A + F+ M + ++        
Sbjct: 52  TNSRDFVSASMVFDRMPLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLS 111

Query: 105 --------------------RPSEF---TFGSVIPSSTALEDLNLGKQLHAWATKVGLQS 141
                                 +EF   TF  ++   + LED +LG Q+H    +VG  +
Sbjct: 112 GYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDT 171

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           +V   SA+LD+Y K     E+ RVF+     N VS++ +I G ++      ALK F+EM 
Sbjct: 172 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
             N         G SQ+        ++  +LR               + A ++ L +G  
Sbjct: 232 KVN--------AGVSQS--------IYASVLR---------------SCAALSELRLGGQ 260

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            HA A+K     D  V  + +  YAKC +M+D+ ++FDK    N  ++NA+I GY+Q   
Sbjct: 261 LHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEH 320

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           G +A+  F R+  +G+  + ++L G+  AC
Sbjct: 321 GFKALLLFHRLMSSGLGFDEISLSGVFRAC 350



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 104/210 (49%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGKQ HA     G +   FV + +L +Y        A+ VF+     +VVS+  MI G
Sbjct: 22  LELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMING 81

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K      A   F  MP R+VVSWN+M+ GY Q G   +++ +F++M R G   +  T 
Sbjct: 82  YAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTF 141

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   + +    +G   H   V+     DV   ++L+  YAK     +SL VF  + E
Sbjct: 142 AIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 201

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +N V+W+A+I G  QN     A++FF+ M+
Sbjct: 202 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 16/194 (8%)

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKC 288
           M+  G  P    L C +    N       + F + ++ F  +   DV   N +I+ YAK 
Sbjct: 32  MILSGFRPTTFVLNCLLQVYTN------SRDFVSASMVFDRMPLRDVVSWNKMINGYAKS 85

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            +M  +   F+ +  R++V+WN+++ GY QNG   ++IE F  M   G   +G T   +L
Sbjct: 86  NNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIIL 145

Query: 349 WACN---HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
             C+    T L  + +    +   +   +      + ++D+ ++  RF E+      +P 
Sbjct: 146 KVCSCLEDTSLGMQIHGVVVRVGCDTDVVAA----SALLDMYAKGKRFVESLRVFQGIPE 201

Query: 406 DPGIGFWKALLGGC 419
              +  W A++ GC
Sbjct: 202 KNSVS-WSAIIAGC 214


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 176/462 (38%), Positives = 270/462 (58%), Gaps = 8/462 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K S   ++FD +P  +VVS   ++  +A++    EA  LF    + ++    FT+ +V+ 
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVS 263

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                  L   +++         + N    +A++  YI+   ++EA  +F      NV S
Sbjct: 264 GYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS 319

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + TM+ G  +    E+A  +F  MP ++ VSW AM+  YSQ G +EE + LFIEM R G 
Sbjct: 320 WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGE 379

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             N S   C +   A+IAAL  G   H   ++    +  FVGN+L++ Y KCG+MED+  
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARN 439

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F+++ ER++V+WN +I GYA++G G+EA+E F+ MR    +P+ +TL+G+L AC+H+GL
Sbjct: 440 AFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGL 499

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VEKG SYF     +     KPEHY CM+DLL R+GR  EA + + D+PF+P    W ALL
Sbjct: 500 VEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G  +IH N ELG  AA +I  L+PE+   YV+LSN  + +GKW +   +R  M+E+G+ +
Sbjct: 560 GASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKK 619

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           VPG SWIE+++KVH F  GD  H   ++IYA L     ++++
Sbjct: 620 VPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKK 661



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 131/308 (42%), Gaps = 51/308 (16%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +P  +  S  T++   A      +A  LF  M    +R S  T+  +I S      
Sbjct: 91  LFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM---PVRDS-VTYNVMISSHANHGL 146

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           ++L +     A     + +    + +L  Y++   +EEA  +F      +V+S+  ++ G
Sbjct: 147 VSLARHYFDLAP----EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSG 202

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            ++  +  +A +LF  MP R+VVSWN M+ GY++ G   EA  L                
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL---------------- 246

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                             F A  V+     DVF   +++S YA+ G +E++  VFD + E
Sbjct: 247 ------------------FDAAPVR-----DVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           RN V+WNA++  Y Q    +EA E F  M    +      L G   A    G++E+  + 
Sbjct: 284 RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQA----GMLEEAKAV 339

Query: 364 FSQAKLED 371
           F     +D
Sbjct: 340 FDTMPQKD 347



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 8/219 (3%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           +V   +A++  Y++   + EA  +F+     +VVS+  M+ G  +R    +A +LF   P
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 251

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            R+V +W A++ GY+Q G  EEA  +F  M      P  + +    + AA I    M ++
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PERNAVSWNAMVAAYIQRRMMDEA 305

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
                   +   +V   N++++ YA+ G +E++  VFD + +++ V+W A++  Y+Q G 
Sbjct: 306 KE--LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGC 363

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            EE ++ F  M   G   N      +L  C     +E G
Sbjct: 364 SEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 31/188 (16%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P V+     I   ++  R  DA +LF  MP R+  ++NAM+ GYS  GR   A +LF  +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI 95

Query: 232 LR---------------------------EGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
            R                           E  V +  T    I + AN   + + + +  
Sbjct: 96  PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD 155

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
            A +     D    N +++ Y + G +E++  +F+  TE ++++WNA++ GY Q G+  E
Sbjct: 156 LAPE----KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211

Query: 325 AIEFFERM 332
           A E F+RM
Sbjct: 212 ARELFDRM 219


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/471 (36%), Positives = 276/471 (58%), Gaps = 42/471 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS          +FD++P  ++VS T +I  +++     EA+ LF +ML L  +P+EFT
Sbjct: 153 CGS----LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFT 208

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             S++ +S      + G+QLHA++ K G   NV VGS++LD+Y + + + EA  +F    
Sbjct: 209 LSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIF---- 264

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        +  +NVVSWNA+I G+++ G  E  + LF++
Sbjct: 265 ---------------------------NSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQ 297

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR+G  P H T      A A+  +L  GK  HA  +K  G+   ++GN+LI  YAK GS
Sbjct: 298 MLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGS 357

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++D+  VF +L +++IV+WN++I GYAQ+G G EA++ FE+M    ++PN +T L +L A
Sbjct: 358 IKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTA 417

Query: 351 CNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C+H+GL+++G  YF    + K+E     +  H+  +VDLL R+GR  EA +F+ ++P  P
Sbjct: 418 CSHSGLLDEGQYYFELMKKHKIE----AQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKP 473

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W ALLG C++H N++LG +AA +I  LDP D   +V+LSN  + AG+  + + +R+
Sbjct: 474 TAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRK 533

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            MKE G+ + P CSW+EI+++VHVFV  D +H M +EI  +    + +I+E
Sbjct: 534 MMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKE 584



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 154/322 (47%), Gaps = 37/322 (11%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           ++ P    +  ++   T L  L  G+ +HA       + ++ + + IL++Y K  S+EEA
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             +F+     ++VS+T +I G                               YSQ+G+  
Sbjct: 160 QDLFDKMPTKDMVSWTVLISG-------------------------------YSQSGQAS 188

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+ LF +ML  G  PN  TL   + A+    +   G+  HA ++K+   ++V VG+SL+
Sbjct: 189 EALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLL 248

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YA+   M ++ ++F+ L  +N+V+WNA+I G+A+ G GE  +  F +M   G  P   
Sbjct: 249 DMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHF 308

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFL 400
           T   +  AC  +G +E+G  +     ++  G  +P  Y    ++D+ ++SG  K+AK+  
Sbjct: 309 TYSSVFTACASSGSLEQG-KWVHAHVIKSGG--QPIAYIGNTLIDMYAKSGSIKDAKKVF 365

Query: 401 YDLPFDPGIGFWKALLGGCQIH 422
             L     I  W +++ G   H
Sbjct: 366 RRL-VKQDIVSWNSIISGYAQH 386



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 5/183 (2%)

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           L  G++ HA       + D+ + N +++ YAKCGS+E++  +FDK+  +++V+W  +I G
Sbjct: 121 LKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISG 180

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           Y+Q+G+  EA+  F +M   G +PN  TL  LL A   TG  +          L+    +
Sbjct: 181 YSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG-TGPSDHHGRQLHAFSLKYGYDM 239

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
                + ++D+ +R    +EAK     L     +  W AL+ G   H+    GE   R  
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS-WNALIAG---HARKGEGEHVMRLF 295

Query: 436 LAL 438
           L +
Sbjct: 296 LQM 298


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 176/462 (38%), Positives = 270/462 (58%), Gaps = 8/462 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K S   ++FD +P  +VVS   ++  +A++    EA  LF    + ++    FT+ +V+ 
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVS 263

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                  L   +++         + N    +A++  YI+   ++EA  +F      NV S
Sbjct: 264 GYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS 319

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + TM+ G  +    E+A  +F  MP ++ VSW AM+  YSQ G +EE + LFIEM R G 
Sbjct: 320 WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGE 379

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             N S   C +   A+IAAL  G   H   ++    +  FVGN+L++ Y KCG+MED+  
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARN 439

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F+++ ER++V+WN +I GYA++G G+EA+E F+ MR    +P+ +TL+G+L AC+H+GL
Sbjct: 440 AFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGL 499

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VEKG SYF     +     KPEHY CM+DLL R+GR  EA + + D+PF+P    W ALL
Sbjct: 500 VEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G  +IH N ELG  AA +I  L+PE+   YV+LSN  + +GKW +   +R  M+E+G+ +
Sbjct: 560 GASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKK 619

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           VPG SWIE+++KVH F  GD  H   ++IYA L     ++++
Sbjct: 620 VPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKK 661



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 131/308 (42%), Gaps = 51/308 (16%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +P  +  S  T++   A      +A  LF  M    +R S  T+  +I S      
Sbjct: 91  LFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM---PVRDS-VTYNVMISSHANHGL 146

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           ++L +     A     + +    + +L  Y++   +EEA  +F      +V+S+  ++ G
Sbjct: 147 VSLARHYFDLAP----EKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSG 202

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            ++  +  +A +LF  MP R+VVSWN M+ GY++ G   EA  L                
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL---------------- 246

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                             F A  V+     DVF   +++S YA+ G +E++  VFD + E
Sbjct: 247 ------------------FDAAPVR-----DVFTWTAVVSGYAQNGMLEEARRVFDAMPE 283

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           RN V+WNA++  Y Q    +EA E F  M    +      L G   A    G++E+  + 
Sbjct: 284 RNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQA----GMLEEAKAV 339

Query: 364 FSQAKLED 371
           F     +D
Sbjct: 340 FDTMPQKD 347



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 8/219 (3%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           +V   +A++  Y++   + EA  +F+     +VVS+  M+ G  +R    +A +LF   P
Sbjct: 192 DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 251

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            R+V +W A++ GY+Q G  EEA  +F  M      P  + +    + AA I    M ++
Sbjct: 252 VRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PERNAVSWNAMVAAYIQRRMMDEA 305

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
                   +   +V   N++++ YA+ G +E++  VFD + +++ V+W A++  Y+Q G 
Sbjct: 306 KE--LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGC 363

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            EE ++ F  M   G   N      +L  C     +E G
Sbjct: 364 SEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 31/188 (16%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P V+     I   ++  R  DA +LF  MP R+  ++NAM+ GYS  GR   A +LF  +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI 95

Query: 232 LR---------------------------EGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
            R                           E  V +  T    I + AN   + + + +  
Sbjct: 96  PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD 155

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
            A +     D    N +++ Y + G +E++  +F+  TE ++++WNA++ GY Q G+  E
Sbjct: 156 LAPE----KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSE 211

Query: 325 AIEFFERM 332
           A E F+RM
Sbjct: 212 ARELFDRM 219


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 176/462 (38%), Positives = 270/462 (58%), Gaps = 8/462 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K S   ++FD +P  +VVS   ++  +A++    EA  LF    + ++    FT+ +V+ 
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVS 263

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                  L   +++         + N    +A++  YI+   ++EA  +F      NV S
Sbjct: 264 GYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS 319

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + TM+ G  +    E+A  +F  MP ++ VSW AM+  YSQ G +EE + LFIEM R G 
Sbjct: 320 WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGE 379

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             N S   C +   A+IAAL  G   H   ++    +  FVGN+L++ Y KCG+MED+  
Sbjct: 380 WVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARN 439

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F+++ ER++V+WN +I GYA++G G+EA+E F+ MR    +P+ +TL+G+L AC+H+GL
Sbjct: 440 AFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGL 499

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VEKG SYF     +     KPEHY CM+DLL R+GR  EA + + D+PF+P    W ALL
Sbjct: 500 VEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 559

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G  +IH N ELG  AA +I  L+PE+   YV+LSN  + +GKW +   +R  M+E+G+ +
Sbjct: 560 GASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKK 619

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           VPG SWIE+++KVH F  GD  H   ++IYA L     ++++
Sbjct: 620 VPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKK 661



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 8/214 (3%)

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           +A++  Y++   + EA  +F+     +VVS+  M+ G  +R    +A +LF   P R+V 
Sbjct: 197 NALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVF 256

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           +W A++ GY+Q G  EEA  +F  M      P  + +    + AA I    M ++     
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAM------PERNAVSWNAMVAAYIQRRMMDEAKE--L 308

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
              +   +V   N++++ YA+ G +E++  VFD + +++ V+W A++  Y+Q G  EE +
Sbjct: 309 FNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETL 368

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + F  M   G   N      +L  C     +E G
Sbjct: 369 QLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 402



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 31/188 (16%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P V+     I   ++  R  DA +LF  MP R+  ++NAM+ GYS  GR   A +LF  +
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI 95

Query: 232 LR---------------------------EGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
            R                           E  V +  T    I + AN   + + + +  
Sbjct: 96  PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD 155

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
            A +     D    N +++ Y + G +E++  +F+  TE + ++WNA++ GY Q G+  E
Sbjct: 156 LAPE----KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSE 211

Query: 325 AIEFFERM 332
           A E F+RM
Sbjct: 212 ARELFDRM 219



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 125/315 (39%), Gaps = 29/315 (9%)

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           +A+L  Y     +  A  +F     P+  SY T++  L       DA  LF EMP R+ V
Sbjct: 73  NAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSV 132

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           ++N MI  ++  G    A + F     +  V  +  L   +       A G+  S     
Sbjct: 133 TYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS----- 187

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
                + D    N+L+S Y + G M ++  +FD++  R++V+WN ++ GYA+ G   EA 
Sbjct: 188 ---RTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEAR 244

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA----C 382
             F+   +  +     T   ++      G++E+    F            PE  A     
Sbjct: 245 RLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDA---------MPERNAVSWNA 291

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED 442
           MV    +     EAKE    +P    +  W  +L G   ++   + E A      +  +D
Sbjct: 292 MVAAYIQRRMMDEAKELFNMMPCR-NVASWNTMLTG---YAQAGMLEEAKAVFDTMPQKD 347

Query: 443 VSSYVMLSNALSVAG 457
             S+  +  A S  G
Sbjct: 348 AVSWAAMLAAYSQGG 362


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 178/519 (34%), Positives = 290/519 (55%), Gaps = 42/519 (8%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ ++ +C   L+L +  ++H  A    IE+    V  L         V+  ++    ++
Sbjct: 224 LVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL---------VNMYAKCGNVNT 274

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
            H++F+ +P  +V S   IIG ++    + EA+  F+RM +  I+P+  T  SV+P+   
Sbjct: 275 AHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAH 334

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L  L  G+Q+H +A + G +SN  VG+A++++Y K                         
Sbjct: 335 LFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAK------------------------- 369

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
            CG         A KLF+ MP +NVV+WNA+I GYSQ G   EA+ LFIEM  +G+ P+ 
Sbjct: 370 -CG-----NVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDS 423

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
             +   + A A+  AL  GK  H   ++   + +V VG  L+  YAKCG++  +  +F++
Sbjct: 424 FAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFER 483

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + E+++V+W  +I  Y  +G GE+A+  F +M+  G + + +    +L AC+H GLV++G
Sbjct: 484 MPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQG 543

Query: 361 YSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
             YF Q    D G+  K EHYAC+VDLL R+G   EA   + ++  +P    W ALLG C
Sbjct: 544 LQYF-QCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGAC 602

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +IH N+ELGE AA+ +  LDP++   YV+LSN  + A +W++V+ +R+ MKEKG+ + PG
Sbjct: 603 RIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPG 662

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           CS + +   V  F+ GDR H  +++IYA+L    EQ+R+
Sbjct: 663 CSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRK 701



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 199/387 (51%), Gaps = 43/387 (11%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ +    CGS      +  QVFD +P  +VVS   II  +++     EA+ LFS M + 
Sbjct: 160 ALASMYTKCGS----LENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVN 215

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            I+P+  T  SV+P    L  L  GKQ+H +A + G++S+V V + ++++Y K  ++  A
Sbjct: 216 GIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTA 275

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            ++FE                                MP R+V SWNA+IGGYS   ++ 
Sbjct: 276 HKLFE-------------------------------RMPIRDVASWNAIIGGYSLNSQHH 304

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+  F  M   G+ PN  T+   + A A++ AL  G+  H  A++   + +  VGN+L+
Sbjct: 305 EALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALV 364

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + YAKCG++  +  +F+++ ++N+V WNA+I GY+Q+G   EA+  F  M+  GI+P+  
Sbjct: 365 NMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSF 424

Query: 343 TLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
            ++ +L AC H   +E+G   + Y  ++  E   ++       +VD+ ++ G    A++ 
Sbjct: 425 AIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVG----TGLVDIYAKCGNVNTAQKL 480

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVE 426
              +P +  +  W  ++    IH + E
Sbjct: 481 FERMP-EQDVVSWTTMILAYGIHGHGE 506



 Score =  191 bits (485), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 195/382 (51%), Gaps = 45/382 (11%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  +   +F+       ++ +  VV   TIIG + K   + +A+ L+ +M    I 
Sbjct: 64  TREVSACANQTQFTQT-----DIRNNAVVWKETIIG-YVKNGFWNKALRLYYQMQRTGIN 117

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P +  F SVI +  +  DL  G+++H      G +S+V VG+A+  +Y K  S+E A +V
Sbjct: 118 PDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQV 177

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+                                MP R+VVSWNA+I GYSQ G+  EA+
Sbjct: 178 FD-------------------------------RMPKRDVVSWNAIIAGYSQNGQPYEAL 206

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF EM   G+ PN STL   +   A++ AL  GK  H  A++   + DV V N L++ Y
Sbjct: 207 ALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMY 266

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           AKCG++  +  +F+++  R++ +WNA+I GY+ N +  EA+ FF RM++ GI+PN +T++
Sbjct: 267 AKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMV 326

Query: 346 GLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
            +L AC H   +E+G   + Y  ++  E   ++       +V++ ++ G    A +    
Sbjct: 327 SVLPACAHLFALEQGQQIHGYAIRSGFESNDVVG----NALVNMYAKCGNVNSAYKLFER 382

Query: 403 LPFDPGIGFWKALLGGCQIHSN 424
           +P    +  W A++ G   H +
Sbjct: 383 MP-KKNVVAWNAIISGYSQHGH 403



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 131/246 (53%), Gaps = 10/246 (4%)

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           N V W   I GY + G   +A+ L+ +M R G+ P+       I A  + + L  G+  H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
              +    + DV VG +L S Y KCGS+E++  VFD++ +R++V+WNA+I GY+QNG+  
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHY 380
           EA+  F  M++NGI+PN  TL+ ++  C H   +E+G   + Y  ++ +E   ++     
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLV----V 259

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS--NVELGEFAARRILAL 438
             +V++ ++ G    A +    +P    +  W A++GG  ++S  +  L  F   ++  +
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGGYSLNSQHHEALAFFNRMQVRGI 318

Query: 439 DPEDVS 444
            P  ++
Sbjct: 319 KPNSIT 324


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/461 (39%), Positives = 275/461 (59%), Gaps = 17/461 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+   + VS   II    +     E ++LF  ML   I P EFTFGS++ + T   
Sbjct: 396 RVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-G 454

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G ++H+   K G+ SN  VG +++D+Y K   IEEA ++         VS T    
Sbjct: 455 SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGT---- 510

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            + + E+  +  K  QEM     VSWN++I GY    ++E+A  LF  M+  G+ P+  T
Sbjct: 511 -MEELEKMHN--KRLQEM----CVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFT 563

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +   AN+A+ G+GK  HA  +K   + DV++ ++L+  Y+KCG + DS L+F+K  
Sbjct: 564 YATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSL 623

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R+ VTWNA+ICGYA +G+GEEAI+ FERM +  I+PN VT + +L AC H GL++KG  
Sbjct: 624 RRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLE 683

Query: 363 YFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF   K  D G L P+  HY+ MVD+L +SG+ K A E + ++PF+     W+ LLG C 
Sbjct: 684 YFYMMK-RDYG-LDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCT 741

Query: 421 IH-SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           IH +NVE+ E A   +L LDP+D S+Y +LSN  + AG W+ VS++RR M+   + + PG
Sbjct: 742 IHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPG 801

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           CSW+E+K ++HVF+ GD+ H   +EIY  L     +++ F+
Sbjct: 802 CSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFD 842



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 165/347 (47%), Gaps = 35/347 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++  +F    +VF  +P+ N VS + II    + +    A+  F  M  +N   S+  + 
Sbjct: 184 AKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYA 243

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ S  AL +L LG QLHA A K    ++  V +A LD+Y K  ++++A  +F+++ N 
Sbjct: 244 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENL 303

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N             R+                  S+NAMI GYSQ     +A+ LF  ++
Sbjct: 304 N-------------RQ------------------SYNAMITGYSQEEHGFKALLLFHRLM 332

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             GL  +  +L     A A +  L  G   +  A+K    LDV V N+ I  Y KC ++ 
Sbjct: 333 SSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALA 392

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++  VFD++  R+ V+WNA+I  + QNG+G E +  F  M  + I P+  T   +L AC 
Sbjct: 393 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT 452

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKE 398
              L   GY     + +   GM       C ++D+ S+ G  +EA++
Sbjct: 453 GGSL---GYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 496



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 179/405 (44%), Gaps = 58/405 (14%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +RT ++   ++ D       +FD   +LN  S   +I  ++++ H  +A+ LF R++   
Sbjct: 276 VRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSG 335

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +   E +   V  +   ++ L+ G Q++  A K  L  +V V +A +D+Y K  ++ EA 
Sbjct: 336 LGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAF 395

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           RVF+                               EM  R+ VSWNA+I  + Q G+  E
Sbjct: 396 RVFD-------------------------------EMRRRDAVSWNAIIAAHEQNGKGYE 424

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            + LF+ MLR  + P+  T   +I+ A    +LG G   H+  VK     +  VG SLI 
Sbjct: 425 TLFLFVSMLRSRIEPDEFTFG-SILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLID 483

Query: 284 FYAKCGSMEDSLLVFDKLTER-NI-------------------VTWNAVICGYAQNGRGE 323
            Y+KCG +E++  +  +  +R N+                   V+WN++I GY    + E
Sbjct: 484 MYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSE 543

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC- 382
           +A   F RM   GI P+  T   +L  C +      G    +Q   ++   L+ + Y C 
Sbjct: 544 DAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE---LQSDVYICS 600

Query: 383 -MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            +VD+ S+ G   +++  +++         W A++ G   H   E
Sbjct: 601 TLVDMYSKCGDLHDSR-LMFEKSLRRDFVTWNAMICGYAHHGKGE 644



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 107/210 (50%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGKQ HA     G +   FV + +L +Y        A+ VF+     +VVS+  MI G
Sbjct: 22  LELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMING 81

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K      A   F  MP R+VVSWN+M+ GY Q G + +++ +F++M REG+  +  T 
Sbjct: 82  YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTF 141

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   + +    +G   H   V+     DV   ++L+  YAK     +SL VF  + E
Sbjct: 142 AIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 201

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +N V+W+A+I G  QN     A++FF+ M+
Sbjct: 202 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 31/299 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+S+     +  F+ +P  +VVS  +++  + +     ++I +F  M    I     TF 
Sbjct: 83  SKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFA 142

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            ++   + LED +LG Q+H    +VG  ++V   SA+LD+Y K     E+ RVF+     
Sbjct: 143 IILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK 202

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N VS++ +I G ++      ALK F+EM   N         G SQ+        ++  +L
Sbjct: 203 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVN--------AGVSQS--------IYASVL 246

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R               + A ++ L +G   HA A+K     D  V  + +  YAKC +M+
Sbjct: 247 R---------------SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           D+ ++FD     N  ++NA+I GY+Q   G +A+  F R+  +G+  + ++L G+  AC
Sbjct: 292 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRAC 350



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 38/205 (18%)

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKC 288
           M+  G  P    L C +    N       + F + ++ F  +   DV   N +I+ Y+K 
Sbjct: 32  MIISGFRPTTFVLNCLLQVYTN------SRDFVSASMVFDKMPLRDVVSWNKMINGYSKS 85

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             M  +   F+ +  R++V+WN+++ GY QNG   ++IE F  M   GI  +G T   +L
Sbjct: 86  NDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIIL 145

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEH--------------YACMVDLLSRSGRFK 394
             C+                LED  +    H               + ++D+ ++  RF 
Sbjct: 146 KVCSF---------------LEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFV 190

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGC 419
           E+      +P    +  W A++ GC
Sbjct: 191 ESLRVFQGIPEKNSVS-WSAIIAGC 214


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 283/493 (57%), Gaps = 52/493 (10%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSE 108
           ++ +     ++FD   D  +VS   ++G + ++   ++A  LF RM     +  NI  + 
Sbjct: 196 QNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITG 255

Query: 109 FTFGSVIPSSTAL-EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           +    ++  +  L E+L +               +VF  +A++  +++   ++EATR+FE
Sbjct: 256 YAQNGLLSEARRLFEELPI--------------RDVFAWTAMVSGFVQNGMLDEATRIFE 301

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN------------------ 209
           +    N VS+  MI G ++ ++ E A +LF +MP RN  SWN                  
Sbjct: 302 EMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKIL 361

Query: 210 -------------AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAAL 256
                        AMI GY+Q+G++EEA++LFI+M R+G + N S L CA+ + A IAAL
Sbjct: 362 FDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAAL 421

Query: 257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
            +GK  H   VK   +     GN+L++ Y KCGS+E++  VF+ +TE++IV+WN +I GY
Sbjct: 422 ELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGY 481

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376
           A++G G+EA+  FE M++  I+P+ VTL+G+L AC+HTGLV+KG  YF+           
Sbjct: 482 ARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITAN 540

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436
            +HY CM+DLL R+GR  EA   +  +PF P    W ALLG  +IH + ELGE AA ++ 
Sbjct: 541 AKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVF 600

Query: 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGD 496
            ++P++   YV+LSN  + +G+W  V  +R +M++KG+ +VPG SW+EI++K H+F  GD
Sbjct: 601 EMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660

Query: 497 RNHHMNDEIYAVL 509
            +H   + IYA L
Sbjct: 661 CSHPEAERIYAYL 673



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 198/428 (46%), Gaps = 50/428 (11%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEF 109
           ++KF    +VF+++PD +++S   ++  + K  +   A  LF++M     +  N   S F
Sbjct: 104 NNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGF 163

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
                +  +  + D  L K   +W             + +L  Y++   IE+A R+F+  
Sbjct: 164 AQNGFVEEARKIFDQMLVKNEISW-------------NGLLSAYVQNGRIEDARRLFDSK 210

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
            +  +VS+  ++ G ++++R +DA  LF  MP R+ +SWN MI GY+Q G   EA  LF 
Sbjct: 211 MDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFE 270

Query: 230 EM----------LREGLVPN---------HSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           E+          +  G V N            +P     + N    G  +S      + L
Sbjct: 271 ELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 271 ----GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
                  +    N++++ YA+CG+++ + ++FD++ +R+ ++W A+I GYAQ+G+ EEA+
Sbjct: 331 FDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEAL 390

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMV 384
             F +M+ +G   N   L   L +C     +E G       +L   G  +  + A   ++
Sbjct: 391 HLFIKMKRDGGILNRSALACALSSCAEIAALELGKQL--HGRLVKAG-FQTGYIAGNALL 447

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPED 442
            +  + G  +EA +   D+  +  I  W  ++ G   H      L  F + + + + P+D
Sbjct: 448 AMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDD 505

Query: 443 VSSYVMLS 450
           V+   +LS
Sbjct: 506 VTLVGVLS 513



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 146/335 (43%), Gaps = 23/335 (6%)

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           + S++   +  +  Y++    E A  VF      + V+Y  MI G L   +F+ A K+F+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +MP R+++SWN M+ GY + G    A  LF +M  + +V  ++ L       +  A  G 
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAML-------SGFAQNGF 168

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
            +       + L K ++   N L+S Y + G +ED+  +FD   +  IV+WN ++ GY +
Sbjct: 169 VEEARKIFDQMLVKNEI-SWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
             R ++A   F+RM +       + + G        GL+ +    F +  + D       
Sbjct: 228 KKRLDDARSLFDRMPVRDKISWNIMITGYA----QNGLLSEARRLFEELPIRDVFA---- 279

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
            +  MV    ++G   EA     ++P    +  W A++ G      +E     AR +   
Sbjct: 280 -WTAMVSGFVQNGMLDEATRIFEEMPEKNEVS-WNAMIAGYVQSQQIE----KARELFDQ 333

Query: 439 DP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            P  + SS+  +    +  G  D    +  EM ++
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQR 368


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 187/519 (36%), Positives = 299/519 (57%), Gaps = 42/519 (8%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + +L  C S  +L K  ++H+     ++E++  S  ++ T A+    + CG+  D     
Sbjct: 250 MNVLSACGSLAALEKGKQIHA----QIVESEHHSDVRVST-ALTKMYIKCGAVKD----A 300

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VF+ +P+ +V++  T+IG        EEA  +F RML   + P   T+ +++ +    
Sbjct: 301 REVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARP 360

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  GK++HA A K GL S+V  G+A++++Y K  S+++A +VF+              
Sbjct: 361 GGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFD-------------- 406

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                             MP R+VVSW A++GGY+  G+  E+ + F +ML++G+  N  
Sbjct: 407 -----------------RMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKI 449

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T  C + A +N  AL  GK  HA  VK     D+ V N+L+S Y KCGS+ED++ V + +
Sbjct: 450 TYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGM 509

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           + R++VTWN +I G AQNGRG EA++ FE M+   +RPN  T + ++ AC    LVE+G 
Sbjct: 510 STRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGR 569

Query: 362 SYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             F+  + +D G++  E HYACMVD+L+R+G   EA++ +  +PF P    W ALL  C+
Sbjct: 570 RQFASMR-KDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACR 628

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            H NVE+GE AA + L L+P++  +YV LS   + AG W +V+ +R+ MKE+G+ + PG 
Sbjct: 629 AHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGR 688

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           SWIE+  +VH FV GD++H   +EIY+ L + T+QI+  
Sbjct: 689 SWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSL 727



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 235/494 (47%), Gaps = 81/494 (16%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLET--PAIRTDSVSCGSESDKFS 59
           + +L  C S  +LN   ++H       +   +A +    T   A+ +    CGS  D   
Sbjct: 149 VSILSACSSPAALNWGREVH-------VRVMEAGLANNATVGNALISMYAKCGSVRD--- 198

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
              +VFD +   + VS TT+ G +A+  + +E++  +  ML   +RPS  T+ +V+ +  
Sbjct: 199 -ARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACG 257

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           +L  L  GKQ+HA   +    S+V V +A+  +YIK                        
Sbjct: 258 SLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIK------------------------ 293

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CG +K     DA ++F+ +P+R+V++WN MIGG   +G+ EEA  +F  ML+E + P+
Sbjct: 294 --CGAVK-----DAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPD 346

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T    + A A    L  GK  HA AVK     DV  GN+LI+ Y+K GSM+D+  VFD
Sbjct: 347 RVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFD 406

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN------- 352
           ++ +R++V+W A++ GYA  G+  E+   F++M   G+  N +T + +L AC+       
Sbjct: 407 RMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKW 466

Query: 353 ----HTGLVEKGY------------SYFSQAKLEDP-----GMLKPE--HYACMVDLLSR 389
               H  +V+ G              YF    +ED      GM   +   +  ++  L++
Sbjct: 467 GKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQ 526

Query: 390 SGRFKEAK---EFLYDLPFDPGIGFWKALLGGCQIHSNVELG--EFAA-RRILALDPEDV 443
           +GR  EA    E +      P    +  ++  C++ + VE G  +FA+ R+   + P + 
Sbjct: 527 NGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTE- 585

Query: 444 SSYVMLSNALSVAG 457
             Y  + + L+ AG
Sbjct: 586 KHYACMVDILARAG 599



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 189/371 (50%), Gaps = 39/371 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CGS     +   ++FD+  + +VVS   +I  +A +   +EA  LF+ M    + P +
Sbjct: 90  VHCGS----VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDK 145

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF S++ + ++   LN G+++H    + GL +N  VG+A++ +Y K  S+ +A RVF+ 
Sbjct: 146 FTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFD- 204

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                          M  R+ VSW  + G Y+++G  +E++  +
Sbjct: 205 ------------------------------AMASRDEVSWTTLTGAYAESGYAQESLKTY 234

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             ML+EG+ P+  T    + A  ++AAL  GK  HA  V+     DV V  +L   Y KC
Sbjct: 235 HAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKC 294

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G+++D+  VF+ L  R+++ WN +I G   +G+ EEA   F RM    + P+ VT L +L
Sbjct: 295 GAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAIL 354

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDP 407
            AC   G +  G    ++A ++D G++    +   ++++ S++G  K+A++    +P   
Sbjct: 355 SACARPGGLACGKEIHARA-VKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRD 412

Query: 408 GIGFWKALLGG 418
            +  W AL+GG
Sbjct: 413 VVS-WTALVGG 422



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 170/350 (48%), Gaps = 47/350 (13%)

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           + +  ++ S    +DL +GKQ+H    + G++ NV++ + +L LY+   S+ EA R+F+ 
Sbjct: 45  YDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDK 104

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
             N                               ++VVSWN MI GY+  G  +EA NLF
Sbjct: 105 FSN-------------------------------KSVVSWNVMISGYAHRGLGQEAFNLF 133

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             M +EGL P+  T    + A ++ AAL  G+  H   ++     +  VGN+LIS YAKC
Sbjct: 134 TLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKC 193

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS+ D+  VFD +  R+ V+W  +   YA++G  +E+++ +  M   G+RP+ +T + +L
Sbjct: 194 GSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVL 253

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA------CMVDLLSRSGRFKEAKEFLYD 402
            AC     +EKG    +Q       +++ EH++       +  +  + G  K+A+E    
Sbjct: 254 SACGSLAALEKGKQIHAQ-------IVESEHHSDVRVSTALTKMYIKCGAVKDAREVFEC 306

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDVSSYVMLS 450
           LP    I  W  ++GG      +E       R+L   + P+ V+   +LS
Sbjct: 307 LPNRDVIA-WNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILS 355


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 176/462 (38%), Positives = 270/462 (58%), Gaps = 8/462 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K S   ++FD +P  +VVS   ++  +A++    EA  LF    + ++    FT+ +V+ 
Sbjct: 83  KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVS 138

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                  L   +++         + N    +A++  YI+   ++EA  +F      NV S
Sbjct: 139 GYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS 194

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + TM+ G  +    E+A  +F  MP ++ VSW AM+  YSQ G +EE + LFIEM R G 
Sbjct: 195 WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGE 254

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             N S   C +   A+IAAL  G   H   ++    +  FVGN+L++ Y KCG+MED+  
Sbjct: 255 WVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARN 314

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F+++ ER++V+WN +I GYA++G G+EA+E F+ MR    +P+ +TL+G+L AC+H+GL
Sbjct: 315 AFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGL 374

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VEKG SYF     +     KPEHY CM+DLL R+GR  EA + + D+PF+P    W ALL
Sbjct: 375 VEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL 434

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G  +IH N ELG  AA +I  L+PE+   YV+LSN  + +GKW +   +R  M+E+G+ +
Sbjct: 435 GASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKK 494

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           VPG SWIE+++KVH F  GD  H   ++IYA L     ++++
Sbjct: 495 VPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKK 536



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 8/219 (3%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           +V   +A++  Y++   + EA  +F+     +VVS+  M+ G  +R    +A +LF   P
Sbjct: 67  DVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP 126

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            R+V +W A++ GY+Q G  EEA  +F  M      P  + +    + AA I    M ++
Sbjct: 127 VRDVFTWTAVVSGYAQNGMLEEARRVFDAM------PERNAVSWNAMVAAYIQRRMMDEA 180

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
                   +   +V   N++++ YA+ G +E++  VFD + +++ V+W A++  Y+Q G 
Sbjct: 181 KE--LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGC 238

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            EE ++ F  M   G   N      +L  C     +E G
Sbjct: 239 SEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECG 277



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 48/257 (18%)

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           + +L  Y++   +EEA  +F      +V+S+  ++ G ++  +  +A +LF  MP R+VV
Sbjct: 41  NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 100

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           SWN M+ GY++ G   EA  L                                  F A  
Sbjct: 101 SWNIMVSGYARRGDMVEARRL----------------------------------FDAAP 126

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           V+     DVF   +++S YA+ G +E++  VFD + ERN V+WNA++  Y Q    +EA 
Sbjct: 127 VR-----DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAK 181

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386
           E F  M    +      L G   A    G++E+  + F     +D        +A M+  
Sbjct: 182 ELFNMMPCRNVASWNTMLTGYAQA----GMLEEAKAVFDTMPQKD-----AVSWAAMLAA 232

Query: 387 LSRSGRFKEAKEFLYDL 403
            S+ G  +E  +   ++
Sbjct: 233 YSQGGCSEETLQLFIEM 249



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 38/59 (64%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           D    N +++ Y + G +E++  +F+  TE ++++WNA++ GY Q G+  EA E F+RM
Sbjct: 36  DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM 94



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 16/169 (9%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF-ERM 332
           D    N +IS +A  G +  +   FD   E++ V+WN ++  Y +NGR EEA   F  R 
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
             + I  N +    + W     G + +    F +    D        +  MV   +R G 
Sbjct: 65  EWDVISWNALMSGYVQW-----GKMSEARELFDRMPGRD-----VVSWNIMVSGYARRGD 114

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441
             EA+  L+D      +  W A++ G   +  +E     ARR+    PE
Sbjct: 115 MVEARR-LFDAAPVRDVFTWTAVVSGYAQNGMLE----EARRVFDAMPE 158


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 184/461 (39%), Positives = 275/461 (59%), Gaps = 17/461 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+   + VS   II    +     E ++LF  ML   I P EFTFGS++ + T   
Sbjct: 438 RVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-G 496

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G ++H+   K G+ SN  VG +++D+Y K   IEEA ++         VS T    
Sbjct: 497 SLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGT---- 552

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            + + E+  +  K  QEM     VSWN++I GY    ++E+A  LF  M+  G+ P+  T
Sbjct: 553 -MEELEKMHN--KRLQEM----CVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFT 605

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +   AN+A+ G+GK  HA  +K   + DV++ ++L+  Y+KCG + DS L+F+K  
Sbjct: 606 YATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSL 665

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R+ VTWNA+ICGYA +G+GEEAI+ FERM +  I+PN VT + +L AC H GL++KG  
Sbjct: 666 RRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLE 725

Query: 363 YFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF   K  D G L P+  HY+ MVD+L +SG+ K A E + ++PF+     W+ LLG C 
Sbjct: 726 YFYMMK-RDYG-LDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCT 783

Query: 421 IH-SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           IH +NVE+ E A   +L LDP+D S+Y +LSN  + AG W+ VS++RR M+   + + PG
Sbjct: 784 IHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPG 843

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           CSW+E+K ++HVF+ GD+ H   +EIY  L     +++ F+
Sbjct: 844 CSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFD 884



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 165/347 (47%), Gaps = 35/347 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++  +F    +VF  +P+ N VS + II    + +    A+  F  M  +N   S+  + 
Sbjct: 226 AKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYA 285

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ S  AL +L LG QLHA A K    ++  V +A LD+Y K  ++++A  +F+++ N 
Sbjct: 286 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENL 345

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N             R+                  S+NAMI GYSQ     +A+ LF  ++
Sbjct: 346 N-------------RQ------------------SYNAMITGYSQEEHGFKALLLFHRLM 374

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             GL  +  +L     A A +  L  G   +  A+K    LDV V N+ I  Y KC ++ 
Sbjct: 375 SSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALA 434

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++  VFD++  R+ V+WNA+I  + QNG+G E +  F  M  + I P+  T   +L AC 
Sbjct: 435 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT 494

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKE 398
              L   GY     + +   GM       C ++D+ S+ G  +EA++
Sbjct: 495 GGSL---GYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEK 538



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 179/405 (44%), Gaps = 58/405 (14%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +RT ++   ++ D       +FD   +LN  S   +I  ++++ H  +A+ LF R++   
Sbjct: 318 VRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSG 377

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +   E +   V  +   ++ L+ G Q++  A K  L  +V V +A +D+Y K  ++ EA 
Sbjct: 378 LGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAF 437

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           RVF+                               EM  R+ VSWNA+I  + Q G+  E
Sbjct: 438 RVFD-------------------------------EMRRRDAVSWNAIIAAHEQNGKGYE 466

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            + LF+ MLR  + P+  T   +I+ A    +LG G   H+  VK     +  VG SLI 
Sbjct: 467 TLFLFVSMLRSRIEPDEFTFG-SILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLID 525

Query: 284 FYAKCGSMEDSLLVFDKLTER-NI-------------------VTWNAVICGYAQNGRGE 323
            Y+KCG +E++  +  +  +R N+                   V+WN++I GY    + E
Sbjct: 526 MYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSE 585

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC- 382
           +A   F RM   GI P+  T   +L  C +      G    +Q   ++   L+ + Y C 
Sbjct: 586 DAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE---LQSDVYICS 642

Query: 383 -MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            +VD+ S+ G   +++  +++         W A++ G   H   E
Sbjct: 643 TLVDMYSKCGDLHDSR-LMFEKSLRRDFVTWNAMICGYAHHGKGE 686



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 107/210 (50%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGKQ HA     G +   FV + +L +Y        A+ VF+     +VVS+  MI G
Sbjct: 64  LELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMING 123

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K      A   F  MP R+VVSWN+M+ GY Q G + +++ +F++M REG+  +  T 
Sbjct: 124 YSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTF 183

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   + +    +G   H   V+     DV   ++L+  YAK     +SL VF  + E
Sbjct: 184 AIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE 243

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +N V+W+A+I G  QN     A++FF+ M+
Sbjct: 244 KNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 273



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 144/299 (48%), Gaps = 31/299 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+S+     +  F+ +P  +VVS  +++  + +     ++I +F  M    I     TF 
Sbjct: 125 SKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFA 184

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            ++   + LED +LG Q+H    +VG  ++V   SA+LD+Y K     E+ RVF+     
Sbjct: 185 IILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEK 244

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N VS++ +I G ++      ALK F+EM   N         G SQ+        ++  +L
Sbjct: 245 NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVN--------AGVSQS--------IYASVL 288

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R               + A ++ L +G   HA A+K     D  V  + +  YAKC +M+
Sbjct: 289 R---------------SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 333

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           D+ ++FD     N  ++NA+I GY+Q   G +A+  F R+  +G+  + ++L G+  AC
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRAC 392



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 38/205 (18%)

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKC 288
           M+  G  P    L C +    N       + F + ++ F  +   DV   N +I+ Y+K 
Sbjct: 74  MIISGFRPTTFVLNCLLQVYTN------SRDFVSASMVFDKMPLRDVVSWNKMINGYSKS 127

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             M  +   F+ +  R++V+WN+++ GY QNG   ++IE F  M   GI  +G T   +L
Sbjct: 128 NDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIIL 187

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEH--------------YACMVDLLSRSGRFK 394
             C+                LED  +    H               + ++D+ ++  RF 
Sbjct: 188 KVCSF---------------LEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFV 232

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGC 419
           E+      +P    +  W A++ GC
Sbjct: 233 ESLRVFQGIPEKNSVS-WSAIIAGC 256


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 178/473 (37%), Positives = 275/473 (58%), Gaps = 9/473 (1%)

Query: 38  KLETPAIRTDSVSCGS-ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLF 96
           + E  AI  +++  G  +  +     ++F+++P  +VVS  T++  +A++    EA  LF
Sbjct: 257 RTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF 316

Query: 97  SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL 156
               + ++    FT+ +++        L   K++           N    +A++  Y++ 
Sbjct: 317 DVAPIRDV----FTWTAIVSGYAQNGMLEEAKRVF----DAMPDKNAVSWNAMMAAYVQR 368

Query: 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216
             +EEA  +F+     NV S+ TM+ G  +    ++A  +F  MP ++ VSW AM+  YS
Sbjct: 369 RMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYS 428

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
           Q G +EE + LF EM R G   N S   C +   A+IAAL  G   H+  +K    +  F
Sbjct: 429 QIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCF 488

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           VGN+L++ Y KCGSME++   F+++ ER++V+WN +I GYA++G G+EA+E F+ MR   
Sbjct: 489 VGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTS 548

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
            +P+ +TL+G+L AC+H+GLVEKG SYF     +     KPEHY CM+DLL R+GR  EA
Sbjct: 549 TKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEA 608

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
              + D+PF+P    W ALLG  +IH N ELG  AA +I  L+PE+   YV+LSN  + +
Sbjct: 609 VNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASS 668

Query: 457 GKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           GKW +V  +R  M E+G+ +VPG SWIE+++KVH F  GD  H   ++IYA L
Sbjct: 669 GKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFL 721



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 152/354 (42%), Gaps = 74/354 (20%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104
           R  +++    + +     ++F  +P  +  +  T++  +A      +A+  F  +     
Sbjct: 110 RNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSI----P 165

Query: 105 RPSEFTFGSVIPS---STALEDL---------------NLGKQLHAWATKVGLQSNVF-- 144
           RP  F++ +++ +   S++L D+               N+    HA    V L  + F  
Sbjct: 166 RPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDL 225

Query: 145 -------VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
                    + +L  Y++   I+EA  +F+     + +S+  ++ G ++R + E+A K+F
Sbjct: 226 APEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMF 285

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
            +MP R+VVSWN M+ GY++ G   EA  LF                       ++A + 
Sbjct: 286 NKMPQRDVVSWNTMVSGYARRGDMAEARRLF-----------------------DVAPI- 321

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
                           DVF   +++S YA+ G +E++  VFD + ++N V+WNA++  Y 
Sbjct: 322 ---------------RDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYV 366

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           Q    EEA E F+ M    +      L G   A    G++++  + F     +D
Sbjct: 367 QRRMMEEAKELFDAMPCRNVASWNTMLTGYAQA----GMLDEARAIFGMMPQKD 416



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 134/320 (41%), Gaps = 21/320 (6%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           +++   + +A R+F      +  +Y TM+ G     R   AL  F+ +P  +  S+N ++
Sbjct: 117 HMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLL 176

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
                +    +   LF EM     V +  +    I + AN   + + + +   A +    
Sbjct: 177 HALGVSSSLADVRALFDEMP----VKDSVSYNVMISSHANHGLVSLARHYFDLAPE---- 228

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            D    N +++ Y + G ++++  +FD  TE + ++WNA++ GY Q  + EEA + F +M
Sbjct: 229 KDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKM 288

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
               +    V+   ++      G + +    F  A + D        +  +V   +++G 
Sbjct: 289 PQRDV----VSWNTMVSGYARRGDMAEARRLFDVAPIRDVFT-----WTAIVSGYAQNGM 339

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
            +EAK     +P D     W A++     +    + E A     A+   +V+S+  +   
Sbjct: 340 LEEAKRVFDAMP-DKNAVSWNAMMAA---YVQRRMMEEAKELFDAMPCRNVASWNTMLTG 395

Query: 453 LSVAGKWDNVSNIRREMKEK 472
            + AG  D    I   M +K
Sbjct: 396 YAQAGMLDEARAIFGMMPQK 415



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 28/271 (10%)

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V+     I   ++  R  DA +LF  MP R+  ++N M+ GY+  GR  +A++ F  + R
Sbjct: 107 VIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR 166

Query: 234 EGLVPNHSTLPCAIIAA--ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
                 ++ L    +++  A++ AL     F    VK     D    N +IS +A  G +
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRAL-----FDEMPVK-----DSVSYNVMISSHANHGLV 216

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE-RMRINGIRPNGVTLLGLLWA 350
             +   FD   E++ V+WN ++  Y +NGR +EA E F+ R   + I  N      L+  
Sbjct: 217 SLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWN-----ALMAG 271

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
                 +E+    F++    D        +  MV   +R G   EA+  L+D+     + 
Sbjct: 272 YVQRSQIEEAQKMFNKMPQRD-----VVSWNTMVSGYARRGDMAEARR-LFDVAPIRDVF 325

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPE 441
            W A++ G   +  +E     A+R+    P+
Sbjct: 326 TWTAIVSGYAQNGMLE----EAKRVFDAMPD 352



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 31/180 (17%)

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           ++V   N  I+ + + G + D+  +F  +  R+  T+N ++ GYA NGR  +A+ FF  +
Sbjct: 105 MEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSI 164

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP-------------GM----- 374
                RP+  +   LL A   +  +    + F +  ++D              G+     
Sbjct: 165 ----PRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLAR 220

Query: 375 ----LKPEHYAC----MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
               L PE  A     M+    R+GR +EA+E L+D   +     W AL+ G    S +E
Sbjct: 221 HYFDLAPEKDAVSWNGMLAAYVRNGRIQEARE-LFDSRTEWDAISWNALMAGYVQRSQIE 279


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 175/469 (37%), Positives = 270/469 (57%), Gaps = 36/469 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS         +VFD++P+ + V+ TT+I  +++     +A+ LF++ML     P+EFT
Sbjct: 99  CGS----LEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFT 154

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             SVI ++ A      G QLH +  K G  SNV VGSA+LDLY +   +++A  VF    
Sbjct: 155 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVF---- 210

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                DAL+       RN VSWNA+I G+++    E+A+ LF  
Sbjct: 211 ---------------------DALE------SRNDVSWNALIAGHARRCGTEKALELFQG 243

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLREG  P+H +      A ++   L  GK  HA  +K   KL  F GN+L+  YAK GS
Sbjct: 244 MLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 303

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + D+  +FD+L +R++V+WN+++  YAQ+G G EA+ +FE MR  GIRPN ++ L +L A
Sbjct: 304 IHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTA 363

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H+GL+++G+ Y+   K +D  +L+  HY  +VDLL R+G    A  F+ ++P +P   
Sbjct: 364 CSHSGLLDEGWHYYELMK-KDGIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAA 422

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            WKALL  C++H N ELG +AA  +  LDP+D   +V+L N  +  G+W++ + +R++MK
Sbjct: 423 IWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMK 482

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           E G+ + P CSW+EI++ +H+FV  D  H   +EI         +I+E 
Sbjct: 483 ESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 531



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 173/367 (47%), Gaps = 36/367 (9%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + +++   T  + L  G+ +H    +   + ++ + + +L++Y K  S+EEA +VF+   
Sbjct: 54  YNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFD--- 110

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                       +MP R+ V+W  +I GYSQ  R  +A+ LF +
Sbjct: 111 ----------------------------KMPERDFVTWTTLISGYSQHDRPFDALVLFNQ 142

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR G  PN  TL   I AAA       G   H   VK     +V VG++L+  Y + G 
Sbjct: 143 MLRFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGL 202

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M+D+ LVFD L  RN V+WNA+I G+A+    E+A+E F+ M   G RP+  +   L  A
Sbjct: 203 MDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGA 262

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+ TG +E+G  +     ++    L       ++D+ ++SG   +A++ ++D      + 
Sbjct: 263 CSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK-IFDRLAKRDVV 320

Query: 411 FWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
            W +LL     H   N  +  F   R   + P ++S   +L+ A S +G  D   +    
Sbjct: 321 SWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLT-ACSHSGLLDEGWHYYEL 379

Query: 469 MKEKGMT 475
           MK+ G+ 
Sbjct: 380 MKKDGIV 386


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 175/468 (37%), Positives = 287/468 (61%), Gaps = 6/468 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVI 115
           +F     +FD++ D ++VS  +II  +  Q +   A+  FS ML  + ++P +FT GSV+
Sbjct: 226 QFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVL 285

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP--N 173
            +    E L LGKQ+HA   +  +     VG+A++ +Y K  ++E A R+ E T  P  N
Sbjct: 286 SACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLN 345

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V+++T+++ G  K    + A  +F  + HR+VV+W AMI GY+Q G   +A+ LF  M+R
Sbjct: 346 VIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIR 405

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG  PN+ TL   +   +++A+L  GK  HA A++      V VGN+LI+ Y++ GS++D
Sbjct: 406 EGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKD 465

Query: 294 SLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWAC 351
           +  +F+ + + R+ +TW ++I   AQ+G G EAIE FE+M RIN ++P+ +T +G+L AC
Sbjct: 466 ARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRIN-LKPDHITYVGVLSAC 524

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
            H GLVE+G SYF+  K          HYACM+DLL R+G  +EA  F+ ++P +P +  
Sbjct: 525 THVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVA 584

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W +LL  C++H  V+L + AA ++L +DP +  +Y+ L+N LS  GKW++ + +R+ MK+
Sbjct: 585 WGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKD 644

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           K + +  G SW++IK+KVH+F   D  H   D IY ++    ++I++ 
Sbjct: 645 KAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKM 692



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 197/387 (50%), Gaps = 37/387 (9%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  +++    S  +VFDE+P  + VS TT+I  +     ++ A++ F RM+   I P++
Sbjct: 86  LSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQ 145

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF +V+ S  A + L++GK++H++  K+G    V V +++L++Y K      A  VF+ 
Sbjct: 146 FTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDR 205

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               +  ++ TMI   ++  +F+ AL LF +M   ++VSWN++I GY   G +  A+  F
Sbjct: 206 MRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETF 265

Query: 229 IEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
             ML+   L P+  TL   + A AN  +L +GK  HA  V+    +   VGN+LIS YAK
Sbjct: 266 SFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAK 325

Query: 288 CGSME-------------------DSLL--------------VFDKLTERNIVTWNAVIC 314
            G++E                    SLL              +FD L  R++V W A+I 
Sbjct: 326 SGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIV 385

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-KLEDPG 373
           GYAQNG   +A+  F  M   G +PN  TL  +L   +    ++ G    + A +LE+  
Sbjct: 386 GYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVS 445

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFL 400
            +   +   ++ + SRSG  K+A++  
Sbjct: 446 SVSVGN--ALITMYSRSGSIKDARKIF 470



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 135/271 (49%), Gaps = 33/271 (12%)

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           ++ S+    D  +G+ +HA   K GL+   VF+ + +L+LY+K  S  +A R+F++    
Sbjct: 18  LLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLK 77

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
              S+ T++    K    + A ++F E+P  + VSW  MI GY+  G  + AV+ F+ M+
Sbjct: 78  TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS-- 290
             G+ P   T    + + A   AL +GK  H+  VK      V V NSL++ YAKCG   
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSV 197

Query: 291 ----------MEDS-------------------LLVFDKLTERNIVTWNAVICGYAQNGR 321
                     ++D+                   L +FD++T+ +IV+WN++I GY   G 
Sbjct: 198 MAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGY 257

Query: 322 GEEAIEFFERM-RINGIRPNGVTLLGLLWAC 351
              A+E F  M + + ++P+  TL  +L AC
Sbjct: 258 DIRALETFSFMLKSSSLKPDKFTLGSVLSAC 288


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 175/470 (37%), Positives = 276/470 (58%), Gaps = 9/470 (1%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +R   +   +E     +  QVFDE  D +VV+ TT+I  +A     EEA+ +F  MLL +
Sbjct: 294 VRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSH 353

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           + P+E T  +V+ + + + +L +GK++H    +  ++ ++ + +A+LD+Y+K   + +A 
Sbjct: 354 VEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDAR 413

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            +F+     +V S+T+M+ G  K    E A + F + P +N V W+AMI GYSQ  + +E
Sbjct: 414 ELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKE 473

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK---LDVFVGNS 280
           ++ LF EM+  G+VP   TL   + A   +  L +G   H   V  +GK   L V + N+
Sbjct: 474 SLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFV--VGKIIPLSVTLENA 531

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           ++  YAKCGS++ +  VF  + ERN+++WN +I GYA NGR ++AI  F++MR  G  PN
Sbjct: 532 IVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPN 591

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKE 398
            +T + LL AC+H GL+ +G  YF    +E    +KPE  HYACMVDLL R+G  +EA +
Sbjct: 592 NITFVSLLTACSHGGLISEGREYFDN--MERKYGIKPERGHYACMVDLLGRTGLLEEAYK 649

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
            + ++P  P    W ALL  C++H NVEL   +A  +L LDPED   YV+L+N  +   K
Sbjct: 650 LIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRK 709

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAV 508
           W +V  +R  MK+KG+ ++PG S IEI      F+  D +H  ++EIY +
Sbjct: 710 WSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQSEEIYKL 759



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 184/452 (40%), Gaps = 72/452 (15%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P  R  +    + S      H +F+ V   N     T+I  +        A   F  M  
Sbjct: 191 PVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQ 250

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
           L +     +F   + +    E +  G+ ++    K+G    + V + ++  Y +   ++ 
Sbjct: 251 LRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKN 310

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           A +VF+++ + +VV++TTMI                                GY+    +
Sbjct: 311 ARQVFDESSDKDVVTWTTMI-------------------------------DGYAAHDCS 339

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA--------CAVKFLGKL 273
           EEA+ +F  ML   + PN  TL   + A +++  L MGK  H         C++     L
Sbjct: 340 EEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNAL 399

Query: 274 -----------------------DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
                                  DV+   S+++ YAKCG +E +   FD+   +N V W+
Sbjct: 400 LDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWS 459

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQA 367
           A+I GY+QN + +E+++ F  M   G+ P   TL+ +L AC     +  G   + YF   
Sbjct: 460 AMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVG 519

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE- 426
           K+  P  +  E+   +VD+ ++ G    A E    +P +  +  W  ++ G   +   + 
Sbjct: 520 KI-IPLSVTLEN--AIVDMYAKCGSIDAATEVFSTMP-ERNLISWNTMIAGYAANGRAKQ 575

Query: 427 -LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            +  F   R +  +P ++ ++V L  A S  G
Sbjct: 576 AINVFDQMRNMGFEPNNI-TFVSLLTACSHGG 606



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 9/305 (2%)

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           VS     C L        A  +F  +   N   WN MI GY    +   A + F+ M + 
Sbjct: 192 VSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQL 251

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
            +  +  +   A+ A      +  G+S +    K     ++ V N LI FYA+ G ++++
Sbjct: 252 RVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNA 311

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VFD+ +++++VTW  +I GYA +   EEA+E FE M ++ + PN VTL+ ++ AC+  
Sbjct: 312 RQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDM 371

Query: 355 GLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           G +E G       K+E+  M      +  ++D+  +     +A+E L+D      +  W 
Sbjct: 372 GNLEMGKRV--HEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARE-LFDRMATKDVYSWT 428

Query: 414 ALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           +++ G     ++E    +ARR     P ++   +  +    S   K      +  EM E+
Sbjct: 429 SMVNGYAKCGDLE----SARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMER 484

Query: 473 GMTRV 477
           G+  +
Sbjct: 485 GVVPI 489


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 180/479 (37%), Positives = 282/479 (58%), Gaps = 14/479 (2%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIE--TQKASVQKLETPAIRTDS----------VSCGSE 54
           IC  SLSL  +S LH     +L+   T    +++L    ++T+S           S  + 
Sbjct: 2   IC--SLSLLHVSPLHHRPSTHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAF 59

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           +  FS    +F  +    V    T +  FA+     +AI LF R+   +I P  +T   V
Sbjct: 60  NSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFV 119

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + + + L D+  GK +H +  K+GLQSN+F+ + I+ LY     I  A +VF+     +V
Sbjct: 120 LKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDV 179

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           +++  MI  L+K    E A KLF EMP RNV SW +MIGGY+Q G+++EA++LF+EM   
Sbjct: 180 ITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDA 239

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           GL+PN  T+   ++A A++  L +G+  H  + +   + ++ V N+LI  Y KCG +ED+
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             +FD + ER +V+W+A+I G A +GR E+A+  F +M   G++PN VT +G+L AC+H 
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHM 359

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G+VEKG  YF+    +   + + EHY CMVDL SR+G  +EA EF+ ++P  P    W A
Sbjct: 360 GMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGA 419

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           LLGGC++H NV+L E A R +  LDP +   YV+LSN  + AG+W++V+ +R+ M+++G
Sbjct: 420 LLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG 478


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 176/493 (35%), Positives = 282/493 (57%), Gaps = 52/493 (10%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSE 108
           ++ +     ++FD   D  +VS   ++G + ++   ++A  LF RM     +  NI  + 
Sbjct: 196 QNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITG 255

Query: 109 FTFGSVIPSSTAL-EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           +    ++  +  L E+L +               +VF  +A++  +++   ++EATR+FE
Sbjct: 256 YAQNGLLSEARRLFEELPI--------------RDVFAWTAMVSGFVQNGMLDEATRIFE 301

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN------------------ 209
           +    N VS+  MI G ++ ++ E A +LF +MP RN  SWN                  
Sbjct: 302 EMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKIL 361

Query: 210 -------------AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAAL 256
                        AMI GY+Q+G++EEA++LFI+M R+G + N S L CA+ + A IAAL
Sbjct: 362 FDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAAL 421

Query: 257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
            +GK  H   VK   +     GN+L++ Y KCGS+E++  VF+ +TE++IV+WN +I GY
Sbjct: 422 ELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGY 481

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376
           A++G G+EA+  FE M++  I+P+ VTL+G+L AC+HTG V+KG  YF+           
Sbjct: 482 ARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITAN 540

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436
            +HY CM+DLL R+GR  EA   +  +PF P    W ALLG  +IH + ELGE AA ++ 
Sbjct: 541 AKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVF 600

Query: 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGD 496
            ++P++   YV+LSN  + +G+W  V  +R +M++KG+ +VPG SW+EI++K H+F  GD
Sbjct: 601 EMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGD 660

Query: 497 RNHHMNDEIYAVL 509
            +H   + IYA L
Sbjct: 661 CSHPEAERIYAYL 673



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 198/428 (46%), Gaps = 50/428 (11%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEF 109
           ++KF    +VF+++PD +++S   ++  + K  +   A  LF++M     +  N   S F
Sbjct: 104 NNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGF 163

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
                +  +  + D  L K   +W             + +L  Y++   IE+A R+F+  
Sbjct: 164 AQNGFVEEARKIFDQMLVKNEISW-------------NGLLSAYVQNGRIEDARRLFDSK 210

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
            +  +VS+  ++ G ++++R +DA  LF  MP R+ +SWN MI GY+Q G   EA  LF 
Sbjct: 211 MDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFE 270

Query: 230 EM----------LREGLVPN---------HSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           E+          +  G V N            +P     + N    G  +S      + L
Sbjct: 271 ELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAREL 330

Query: 271 ----GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
                  +    N++++ YA+CG+++ + ++FD++ +R+ ++W A+I GYAQ+G+ EEA+
Sbjct: 331 FDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEAL 390

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMV 384
             F +M+ +G   N   L   L +C     +E G       +L   G  +  + A   ++
Sbjct: 391 HLFIKMKRDGGILNRSALACALSSCAEIAALELGKQL--HGRLVKAG-FQTGYIAGNALL 447

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPED 442
            +  + G  +EA +   D+  +  I  W  ++ G   H      L  F + + + + P+D
Sbjct: 448 AMYGKCGSIEEAFDVFEDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMK-MTIKPDD 505

Query: 443 VSSYVMLS 450
           V+   +LS
Sbjct: 506 VTLVGVLS 513



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 146/335 (43%), Gaps = 23/335 (6%)

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           + S++   +  +  Y++    E A  VF      + V+Y  MI G L   +F+ A K+F+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +MP R+++SWN M+ GY + G    A  LF +M  + +V  ++ L       +  A  G 
Sbjct: 116 KMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAML-------SGFAQNGF 168

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
            +       + L K ++   N L+S Y + G +ED+  +FD   +  IV+WN ++ GY +
Sbjct: 169 VEEARKIFDQMLVKNEI-SWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR 227

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
             R ++A   F+RM +       + + G        GL+ +    F +  + D       
Sbjct: 228 KKRLDDARSLFDRMPVRDKISWNIMITGYA----QNGLLSEARRLFEELPIRDVFA---- 279

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
            +  MV    ++G   EA     ++P    +  W A++ G      +E     AR +   
Sbjct: 280 -WTAMVSGFVQNGMLDEATRIFEEMPEKNEVS-WNAMIAGYVQSQQIE----KARELFDQ 333

Query: 439 DP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            P  + SS+  +    +  G  D    +  EM ++
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQR 368


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/491 (36%), Positives = 288/491 (58%), Gaps = 28/491 (5%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S+K S   ++F+E+P+ NVVS  T+I  +A+    + A+YLF +M   N+  S  T  S+
Sbjct: 128 SNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNV-VSWNTVMSM 186

Query: 115 IPSSTALE------DLNLGKQLHAWATKV-GL-----------------QSNVFVGSAIL 150
           +     +E      D    + + +W   + GL                 + NV   +A++
Sbjct: 187 LAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMI 246

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
             Y +   ++EA  +FE     ++ S+ TMI GL++      A KLF EMP +NV+SW  
Sbjct: 247 TGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTT 306

Query: 211 MIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
           MI G  Q G +EEA+ +F  ML   G  PN  T    + A +N+A LG G+  H    K 
Sbjct: 307 MITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKT 366

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEAIE 327
           + +   FV ++LI+ Y+KCG +  +  +FD    ++R++V+WN +I  YA +G G+EAI 
Sbjct: 367 VYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAIN 426

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
           FF+ MR +G +P+ VT +GLL AC+H GLVE+G  YF +   +   +++ +HYAC+VDL 
Sbjct: 427 FFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLC 486

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447
            R+GR KEA  F+  L   P    W ALL GC +H+NV++G+ AA+++L ++PE+  +Y+
Sbjct: 487 GRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYL 546

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           +LSN  +  GKW   + +R +MK+KG+ + PGCSWIE+ ++VHVFV GD++H  +  IY+
Sbjct: 547 LLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYS 606

Query: 508 VLRSCTEQIRE 518
           +LR    ++++
Sbjct: 607 LLRDLHSKMKK 617



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 26/226 (11%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVVSYTTMICGLLKRERFEDALKLFQ 198
           + +V   + ++  YIK   IEEA R+F+      NVV++T M+ G ++  +  DA KLF 
Sbjct: 80  EPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFN 139

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP----CAIIAAANIA 254
           EMP++NVVSWN MI GY+Q GR + A+ LF +M    +V  ++ +     C  I  A   
Sbjct: 140 EMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEAR-- 197

Query: 255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
                + F       + + DV    ++I+  +K G ++++ L+FD++ ERN+V+WNA+I 
Sbjct: 198 -----RLFDR-----MPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMIT 247

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           GYAQN R +EA++ FERM    + P+  T++        TGL++ G
Sbjct: 248 GYAQNLRLDEALDLFERMPERDL-PSWNTMI--------TGLIQNG 284



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/436 (26%), Positives = 195/436 (44%), Gaps = 75/436 (17%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-LLLNIRPSEFTF 111
           S+  +     ++FDE+ + +V++ TT+I  + K    EEA  LF R+    N+       
Sbjct: 63  SKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMV 122

Query: 112 GSVIPSSTALEDLNL-----GKQLHAWATKV-GLQSNVFVGSA----------------- 148
           G  I S+   +   L      K + +W T + G   N  + SA                 
Sbjct: 123 GGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNT 182

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           ++ +  +   IEEA R+F+     +V+S+T MI GL K  R ++A  LF  MP RNVVSW
Sbjct: 183 VMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSW 242

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
           NAMI GY+Q  R +EA++LF E + E  +P+ +T+   +I                    
Sbjct: 243 NAMITGYAQNLRLDEALDLF-ERMPERDLPSWNTMITGLI-------------------- 281

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
                             + G +  +  +F+++ ++N+++W  +I G  Q G  EEA++ 
Sbjct: 282 ------------------QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKI 323

Query: 329 FERM-RINGIRPNGVTLLGLLWAC-NHTGLVE--KGYSYFSQAKLEDPGMLKPEHYACMV 384
           F RM   NG +PN  T + +L AC N  GL E  + +   S+   +D   +     + ++
Sbjct: 324 FSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFV----VSALI 379

Query: 385 DLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPE 441
           ++ S+ G    A++   D +     +  W  ++     H      +  F   R     P+
Sbjct: 380 NMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPD 439

Query: 442 DVSSYVMLSNALSVAG 457
           DV +YV L +A S AG
Sbjct: 440 DV-TYVGLLSACSHAG 454



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 135/318 (42%), Gaps = 59/318 (18%)

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           T + NV     MI  L K  R  +A +LF EM   +V++W  +I GY + G  EEA  LF
Sbjct: 47  TVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLF 106

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
                                                  +   K +V    +++  Y + 
Sbjct: 107 D--------------------------------------RVDAKKNVVTWTAMVGGYIRS 128

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGL 347
             + D+  +F+++  +N+V+WN +I GYAQNGR + A+  FE+M   N +  N  T++ +
Sbjct: 129 NKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN--TVMSM 186

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L  C   G +E+    F +    D        +  M+  LS++GR  EA+  L+D   + 
Sbjct: 187 LAQC---GRIEEARRLFDRMPERD-----VISWTAMIAGLSKNGRIDEAR-LLFDRMPER 237

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIR 466
            +  W A++ G     N+ L E  A  +    PE D+ S+  +   L   G       + 
Sbjct: 238 NVVSWNAMITG--YAQNLRLDE--ALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLF 293

Query: 467 REMKEKGM----TRVPGC 480
            EM +K +    T + GC
Sbjct: 294 NEMPKKNVISWTTMITGC 311


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/459 (37%), Positives = 284/459 (61%), Gaps = 4/459 (0%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALED 123
           F+++ + +VVS   +I  + +     EA+ +FS+ML+  + +P +FT  S + +   LE+
Sbjct: 234 FEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLEN 293

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT--HNPNVVSYTTMI 181
           L LGKQ+HA   +    +   VG+A++ +Y K   +E A ++ E +   N +V+++T ++
Sbjct: 294 LKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALL 353

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G +K      A ++F  +  R+VV+W AMI GY Q G N++A+ LF  M++EG  PN+ 
Sbjct: 354 DGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNY 413

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   +  ++++A+L  G+  HA A +      V V N+LI+ YAK GS+ D+  VF+ +
Sbjct: 414 TLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLI 473

Query: 302 T-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
             +R+ +TW ++I   AQ+G GEEA+  FERM  NGI+P+ +T +G+L AC H GLVE+G
Sbjct: 474 HWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQG 533

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
            SY++  +     +  P HYACM+DL  R+G  +EA  F+ ++P +P +  W +LL  C+
Sbjct: 534 RSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCK 593

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H NVEL E AA R+L ++PE+  +Y  L+N  S  G+W+N +NIR+ MK+KG+ +  G 
Sbjct: 594 VHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGF 653

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           SW++IK+KVH+F   D  H   D IY ++    ++I++ 
Sbjct: 654 SWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKM 692



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 176/328 (53%), Gaps = 38/328 (11%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++  +    H+VF+E+P+ + VS T +I  + +   +E AI +F  M+  ++ P++FT  
Sbjct: 90  AKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLT 149

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ S  A+E L +G+++H++  K GL S + V +++L++Y K      A  VF+     
Sbjct: 150 NVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLK 209

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +  S+ TMI   ++    + A   F++M  R+VVSWNAMI GY+Q G + EA+++F +ML
Sbjct: 210 STSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKML 269

Query: 233 REGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF--VGNSLISFYAKCG 289
            +    P+  TL  A+ A AN+  L +GK  HA  ++   + D F  VGN+LIS Y+K G
Sbjct: 270 MDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIR--TEFDTFGAVGNALISMYSKSG 327

Query: 290 SME-------------------DSLL--------------VFDKLTERNIVTWNAVICGY 316
            +E                    +LL              +FD L  R++V W A+I GY
Sbjct: 328 GVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGY 387

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTL 344
            QNG  ++A+E F  M   G +PN  TL
Sbjct: 388 VQNGFNQDAMELFRSMIKEGPKPNNYTL 415



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 191/382 (50%), Gaps = 48/382 (12%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           PS+  + S +  S   +D   GK +HA   K GL   VF+ + +++ Y K   I +A RV
Sbjct: 12  PSD-PYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRV 70

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F++    +V S+  ++ G  K  R E+A ++F+EMP  + VSW AMI GY+Q G+ E A+
Sbjct: 71  FDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAI 130

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            +F EM+ + + P   TL   + + A +  LG+G+  H+  VK      + V NSL++ Y
Sbjct: 131 GMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMY 190

Query: 286 AKCGSMEDSLLVFDKLT-------------------------------ERNIVTWNAVIC 314
           AK G    + +VFD++                                ER++V+WNA+I 
Sbjct: 191 AKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMIS 250

Query: 315 GYAQNGRGEEAIEFFERMRIN-GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLE 370
           GY Q+G   EA++ F +M ++   +P+  TL   L AC +   ++ G   +++  + + +
Sbjct: 251 GYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFD 310

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFL-YDLPFDPGIGFWKALLGGCQIHSNVELGE 429
             G +       ++ + S+SG  + A++ +   +  +  +  + ALL G      V+LG+
Sbjct: 311 TFGAVG----NALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGY-----VKLGD 361

Query: 430 F-AARRIL-ALDPEDVSSYVML 449
              ARRI  +L   DV ++  +
Sbjct: 362 INPARRIFDSLRVRDVVAWTAM 383


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/471 (36%), Positives = 278/471 (59%), Gaps = 43/471 (9%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS          +FD++P  ++VS T +I  +++     EA+ LF +ML L  +P+EFT
Sbjct: 153 CGS----LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFT 208

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             S++ +S      + G+QLHA++ K G   NV VGS++LD+Y + + + EA  +F    
Sbjct: 209 LSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIF---- 264

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        +  +NVVSWNA+I G+++ G  E  + LF +
Sbjct: 265 ---------------------------NSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQ 297

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR+G  P H T   +++A A+  +L  GK  HA  +K  G+   ++GN+LI  YAK GS
Sbjct: 298 MLRQGFEPTHFTY-SSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGS 356

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++D+  VF +L +++IV+WN++I GYAQ+G G EA++ FE+M    ++PN +T L +L A
Sbjct: 357 IKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTA 416

Query: 351 CNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C+H+GL+++G  YF    + K+E     +  H+  +VDLL R+GR  EA +F+ ++P  P
Sbjct: 417 CSHSGLLDEGQYYFELMKKHKIE----AQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKP 472

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W ALLG C++H N++LG +AA +I  LDP D   +V+LSN  + AG+  + + +R+
Sbjct: 473 TAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRK 532

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            MKE G+ + P CSW+EI+++VHVFV  D +H M +EI  +    + +I+E
Sbjct: 533 MMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKE 583



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 155/322 (48%), Gaps = 38/322 (11%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           ++ P    +  ++   T L  L  G+ +HA       + ++ + + IL++Y K  S+EEA
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             +F+     ++VS+T +I G                               YSQ+G+  
Sbjct: 160 QDLFDKMPTKDMVSWTVLISG-------------------------------YSQSGQAS 188

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+ LF +ML  G  PN  TL   + A+    +   G+  HA ++K+   ++V VG+SL+
Sbjct: 189 EALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLL 248

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YA+   M ++ ++F+ L  +N+V+WNA+I G+A+ G GE  +  F +M   G  P   
Sbjct: 249 DMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHF 308

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFL 400
           T   +L AC  +G +E+G  +     ++  G  +P  Y    ++D+ ++SG  K+AK+  
Sbjct: 309 TYSSVL-ACASSGSLEQG-KWVHAHVIKSGG--QPIAYIGNTLIDMYAKSGSIKDAKKVF 364

Query: 401 YDLPFDPGIGFWKALLGGCQIH 422
             L     I  W +++ G   H
Sbjct: 365 RRL-VKQDIVSWNSIISGYAQH 385



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 13/219 (5%)

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           L  G++ HA       + D+ + N +++ YAKCGS+E++  +FDK+  +++V+W  +I G
Sbjct: 121 LKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISG 180

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           Y+Q+G+  EA+  F +M   G +PN  TL  LL A   TG  +          L+    +
Sbjct: 181 YSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG-TGPSDHHGRQLHAFSLKYGYDM 239

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
                + ++D+ +R    +EAK     L     +  W AL+ G   H+    GE   R  
Sbjct: 240 NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS-WNALIAG---HARKGEGEHVMRLF 295

Query: 436 LAL-----DPEDVSSYVMLSNALSVA---GKWDNVSNIR 466
             +     +P   +   +L+ A S +   GKW +   I+
Sbjct: 296 XQMLRQGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIK 334


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 175/477 (36%), Positives = 280/477 (58%), Gaps = 37/477 (7%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T    CGS  D      QVF+   D N ++ + +I  +A+     +A+ LFSRM   
Sbjct: 252 ALVTMYAKCGSLDDSL----QVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFA 307

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            I PSEFT   V+ + +    +  GKQ+H +  K+G +S +++ +A++D+Y K    E+A
Sbjct: 308 GINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDA 367

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            + F     P++                               V W +MI GY Q G NE
Sbjct: 368 RKGFNYLQQPDL-------------------------------VLWTSMIAGYVQNGENE 396

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A++L+  M  EG++PN  T+   + A +N+AA   G+  HA  +K+   L+V +G++L 
Sbjct: 397 DALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALS 456

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + YAKCG++E+  +VF ++ ER+I++WNA+I G +QNG G+EA+E FE MR    +P+ V
Sbjct: 457 TMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDV 516

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLY 401
           T + +L AC+H GLV+ G+ YF +   ++ G+L K EHYACMVD+LSR+G+  EAKEF+ 
Sbjct: 517 TFVNVLSACSHMGLVDSGWLYF-RMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIE 575

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
               D G+  W+ LLG C+ + N ELG +A  +++ L  ++ S+YV+LS   +  G+ ++
Sbjct: 576 STTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPED 635

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           V  +R  MK +G+++ PGCSWIE+KS VHVFV GD+ H    EI   +   ++Q+++
Sbjct: 636 VERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHPCIGEIRTEILRLSKQMKD 692



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 180/362 (49%), Gaps = 45/362 (12%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEA--IYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           VFD + + +V+S   +I  +++Q     +  + LF RM   NI P+  TF  +  +++ L
Sbjct: 65  VFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNL 124

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +  G+Q HA A K+    +VFVGS++L++Y K   + EA  VF+              
Sbjct: 125 SSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFD-------------- 170

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                             MP RN V+W  MI GY+      EA  +F  M RE    N  
Sbjct: 171 -----------------RMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEF 213

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG--NSLISFYAKCGSMEDSLLVFD 299
                + A A    +  GK  H  AVK    L VF+   N+L++ YAKCGS++DSL VF+
Sbjct: 214 AFTSVLSALAVPEFVDSGKQIHCLAVK--TGLLVFLSILNALVTMYAKCGSLDDSLQVFE 271

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
              ++N +TW+A+I GYAQ+G   +A++ F RM   GI P+  TL+G+L AC+    VE+
Sbjct: 272 MSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEE 331

Query: 360 G---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G   ++Y  +   E    +       +VD+ ++SG  ++A++    L   P +  W +++
Sbjct: 332 GKQVHNYLLKLGFESQLYI----MTALVDMYAKSGVTEDARKGFNYLQ-QPDLVLWTSMI 386

Query: 417 GG 418
            G
Sbjct: 387 AG 388



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 188/390 (48%), Gaps = 35/390 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +P+ N V+  T+I  +A Q    EA  +F  M       +EF F SV+ +    E
Sbjct: 167 EVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPE 226

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            ++ GKQ+H  A K GL   + + +A++ +Y K  S++++ +VFE +++ N ++++ MI 
Sbjct: 227 FVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMIT 286

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G                               Y+Q+G + +A+ LF  M   G+ P+  T
Sbjct: 287 G-------------------------------YAQSGDSHKALKLFSRMHFAGINPSEFT 315

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A ++  A+  GK  H   +K   +  +++  +L+  YAK G  ED+   F+ L 
Sbjct: 316 LVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQ 375

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           + ++V W ++I GY QNG  E+A+  + RM++ GI PN +T+  +L AC++    ++G  
Sbjct: 376 QPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQ 435

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI- 421
             ++      G L+    + +  + ++ G  +E       +P +  I  W A++ G    
Sbjct: 436 IHARTIKYGLG-LEVTIGSALSTMYAKCGNLEEGNIVFRRMP-ERDIISWNAMISGLSQN 493

Query: 422 -HSNVELGEFAARRILALDPEDVSSYVMLS 450
            +    L  F   R     P+DV+   +LS
Sbjct: 494 GYGKEALELFEEMRQQDTKPDDVTFVNVLS 523



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 34/235 (14%)

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN-VFVGSAILDLYIKLSSIE 160
           + + P   +  + +   T  + L  G+ LHA   K+   S+ +++ +++++ Y K   + 
Sbjct: 1   MPLHPQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLP 60

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
           +A  VF+  HN +V                               +SWN +I GYSQ G 
Sbjct: 61  KAKLVFDRIHNKDV-------------------------------ISWNCLINGYSQQGP 89

Query: 221 NEEA--VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
              +  + LF  M  + ++PN  T      AA+N++++  G+  HA A+K     DVFVG
Sbjct: 90  TGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVG 149

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +SL++ Y K G + ++  VFD++ ERN VTW  +I GYA      EA E FE MR
Sbjct: 150 SSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMR 204



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 10/207 (4%)

Query: 255 ALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           +L  G++ HA  +K       +++ NSLI+FYAKC  +  + LVFD++  +++++WN +I
Sbjct: 22  SLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLI 81

Query: 314 CGYAQNGRGEEA--IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
            GY+Q G    +  +E F+RMR + I PN  T  G+  A ++   +  G    + A ++ 
Sbjct: 82  NGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVA-IKM 140

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE-F 430
                    + ++++  ++G   EA+E    +P    +  W  ++ G  I      GE F
Sbjct: 141 ACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVT-WATMISGYAIQRLA--GEAF 197

Query: 431 AARRILALDPEDVSSYVMLS--NALSV 455
               ++  + EDV+ +   S  +AL+V
Sbjct: 198 EVFELMRREEEDVNEFAFTSVLSALAV 224


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 185/487 (37%), Positives = 274/487 (56%), Gaps = 20/487 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK---QHHYEEAIYLFSRMLLL-NIRP 106
           C   S        VF ++P+ N     TI+   A+   +H   EA+ LFS ML    ++P
Sbjct: 61  CAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKP 120

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           + FTF SV+ +      L  GKQ+H    K G   + FV S ++ +Y+  + +E+A  +F
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180

Query: 167 ----------------EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
                           +   + NVV +  MI G ++    + A  LF EMP R+VVSWN 
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNV 240

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           MI GY+Q G   EA+NLF EM    + PN+ TL   + A A I AL +GK  H  A K  
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNK 300

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            ++D  +G++L+  Y+KCGS++++L VF+ L +RN +TW+A+I  +A +GR E+AI  F 
Sbjct: 301 IEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFH 360

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            M   G+ PN V  +G+L AC+H GLVE+G S+FS          + EHY CMVDLL R+
Sbjct: 361 LMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRA 420

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450
           G  +EA+E + ++P +P    WKALLG C++H N+++GE  A  ++ L P D  SYV LS
Sbjct: 421 GHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALS 480

Query: 451 NALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           N  +  G W+ V+ +R +MK   + + PGCSWIEI   +H F+  D +H    EI A+L 
Sbjct: 481 NLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLG 540

Query: 511 SCTEQIR 517
             + ++R
Sbjct: 541 EMSMKLR 547


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 171/461 (37%), Positives = 270/461 (58%), Gaps = 1/461 (0%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
             S + VF ++ + ++VS  ++I  F +    EEA+ LF RM + N RP+  T   V+ +
Sbjct: 182 LDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSA 241

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                DL  G+    +  + G+  N+ + +A+LD+Y+K  S+E+A R+F+     ++VS+
Sbjct: 242 CAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSW 301

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGL 236
           TTMI G  K   ++ A ++F  MP  ++ +WNA+I  Y Q G+ +EA+ +F E+ L +  
Sbjct: 302 TTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNT 361

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN  TL   + A A + A+ +G   H    K   KL+  +  SLI  Y+KCG +E +L 
Sbjct: 362 KPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALE 421

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VF  +  R++  W+A+I G A +G G  AI+ F +M+   ++PN VT   LL AC+H+GL
Sbjct: 422 VFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGL 481

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V++G  +F+Q +     +   +HYACMVD+L R+G  +EA E +  +P  P    W ALL
Sbjct: 482 VDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALL 541

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C+I+ NVEL E A  R+L  D  +  +YV+LSN  + AGKWD VS +R+ MK  G+ +
Sbjct: 542 GACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEK 601

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            PGCS IE+   +H F+ GD +H ++ EIY+ L     +I+
Sbjct: 602 EPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIK 642



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 163/301 (54%), Gaps = 16/301 (5%)

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNH 240
           C L      + A K+F ++P  N+ +WN +I  ++ + +  + + +FI+ML E    PN 
Sbjct: 72  CALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNS 131

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T P  I AA  +++L  G++ H   +K     D+F+ NSLI FY+  G ++ + LVF K
Sbjct: 132 YTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSK 191

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + E++IV+WN++I G+ Q G  EEA++ F+RM++   RPN VT++G+L AC     +E G
Sbjct: 192 IVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFG 251

Query: 361 Y---SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
                Y  +  ++   +L       M+D+  + G  ++A+  L+D   +  I  W  ++ 
Sbjct: 252 RWACDYIERNGIDINLILS----NAMLDMYVKCGSLEDARR-LFDKMEEKDIVSWTTMID 306

Query: 418 GCQIHSNVELGEF-AARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           G       ++G++ AARR+  + P ED++++  L ++    GK      I RE++    T
Sbjct: 307 G-----YAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNT 361

Query: 476 R 476
           +
Sbjct: 362 K 362



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 76/400 (19%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTFGSVIPSSTAL 121
           +VFD++P  N+ +  T+I  FA      + + +F +ML  + R P+ +TF  VI ++T +
Sbjct: 85  KVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEV 144

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  G+ +H    K    S++F+ ++++  Y  L  ++ A  VF      ++VS+ +MI
Sbjct: 145 SSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMI 204

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G ++    E+AL+LF+ M   N                                 PN  
Sbjct: 205 SGFVQGGSPEEALQLFKRMKMENA-------------------------------RPNRV 233

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV--FVGNSLISFYAKCGSMEDSLLVFD 299
           T+   + A A    L  G+   AC       +D+   + N+++  Y KCGS+ED+  +FD
Sbjct: 234 TMVGVLSACAKRIDLEFGR--WACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFD 291

Query: 300 KLTERNIVT-------------------------------WNAVICGYAQNGRGEEAIEF 328
           K+ E++IV+                               WNA+I  Y QNG+ +EA+  
Sbjct: 292 KMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAI 351

Query: 329 FERMRIN-GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMV 384
           F  +++N   +PN VTL   L AC   G ++ G   + Y  +  ++    L       ++
Sbjct: 352 FRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIK----LNFHITTSLI 407

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
           D+ S+ G  ++A E  Y +     +  W A++ G  +H +
Sbjct: 408 DMYSKCGHLEKALEVFYSVE-RRDVFVWSAMIAGLAMHGH 446


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 167/446 (37%), Positives = 260/446 (58%), Gaps = 37/446 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++   + VS   II    +  H EE + LF  ML   + P ++TFGSV+ +    + 
Sbjct: 429 IFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKA 488

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN G ++H    K G+  + FVGSAI+D+Y K                          CG
Sbjct: 489 LNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCK--------------------------CG 522

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           +L      +A K+ + +  R  VSWN++I G+S   + E A++ F  ML+ G++P++ T 
Sbjct: 523 MLV-----EAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTY 577

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A + +GK  H   +K     DV++ ++++  Y+KCG+M+DS ++F+K  +
Sbjct: 578 ATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPK 637

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ VTW+A+IC YA +G GE+AI+ FE M++  ++PN    + +L AC H G V+KG  Y
Sbjct: 638 RDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHY 697

Query: 364 FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F + +     DP M   EHY+CMVDLL RSG+  EA E +  +PF+     W+ LLG C+
Sbjct: 698 FREMRSHYGLDPQM---EHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICR 754

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +  NVE+ E AA  +L LDP+D S+YV+LSN  ++AG W  V+ IR  MK   + + PGC
Sbjct: 755 LQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGC 814

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIY 506
           SWI+++ +VH F+ GD+ H  ++EIY
Sbjct: 815 SWIQVRDEVHAFLVGDKAHPRSEEIY 840



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 197/434 (45%), Gaps = 46/434 (10%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T ++   ++ D+     +VF+  P+    S   +I  +A+Q    EA+ +F  +    
Sbjct: 308 VGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSY 367

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +   E +    + + +A++    G QLH  A K GL  N+ V + ILD+Y K  ++ EA 
Sbjct: 368 LDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEAC 427

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            +F+D                               M  ++ VSWNA+I  + Q    EE
Sbjct: 428 LIFDD-------------------------------MEIKDAVSWNAIIAAHEQNEHVEE 456

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            + LF+ MLR  + P+  T    + A A   AL  G   H   +K    LD FVG+++I 
Sbjct: 457 TLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIID 516

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG + ++  + ++L ER  V+WN++I G++   +GE A+ +F RM   G+ P+  T
Sbjct: 517 MYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFT 576

Query: 344 LLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFL 400
              +L  C +   VE G     Q  KL+    L  + Y  + +VD+ S+ G  ++++   
Sbjct: 577 YATVLDICANLATVELGKQIHGQILKLQ----LHSDVYIASTIVDMYSKCGNMQDSRIMF 632

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV----SSYVMLSNALSVA 456
              P    +  W A++     H    LGE A +    +  ++V    + ++ +  A +  
Sbjct: 633 EKAPKRDYVT-WSAMICAYAYHG---LGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHM 688

Query: 457 GKWDNVSNIRREMK 470
           G  D   +  REM+
Sbjct: 689 GFVDKGLHYFREMR 702



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 56/454 (12%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD +P+ +VVS  +++  + +   + ++I +F++M LL I+    TF  V+ + T +ED
Sbjct: 126 LFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIED 185

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             LG Q+H  A ++G  S+V  G+A++D+Y                              
Sbjct: 186 YGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTC--------------------------- 218

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
               ++ + A  +F EMP RN V W+A+I GY +  R  E + L+  ML EG+  + +T 
Sbjct: 219 ----KKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATF 274

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
             A  + A ++A  +G   HA A+K     D  VG + +  YAKC  M D+  VF+    
Sbjct: 275 ASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPN 334

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
               + NA+I GYA+  +  EA+E F  ++ + +  + ++L G L AC+      KG  Y
Sbjct: 335 PTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAI----KG--Y 388

Query: 364 FSQAKLEDPGM-LKPEHYAC----MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               +L    +    +   C    ++D+ ++ G   EA     D+     +  W A++  
Sbjct: 389 LEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVS-WNAIIAA 447

Query: 419 CQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
            + + +VE  L  F +     ++P+D   Y   S   + AGK     N   E+  + +  
Sbjct: 448 HEQNEHVEETLALFVSMLRSTMEPDD---YTFGSVVKACAGK--KALNYGMEVHGRVIKS 502

Query: 477 VPGCSW------IEIKSKVHVFVTGDRNHHMNDE 504
             G  W      I++  K  + V  ++ H   +E
Sbjct: 503 GMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEE 536



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 1/297 (0%)

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           + TF  +    + L+ +N GKQ HA  T  G    VFV + +L  Y K  ++  A  VF+
Sbjct: 38  KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFD 97

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                +V+S+ TMI G       E A  LF  MP R+VVSWN+M+  Y Q G + +++ +
Sbjct: 98  KMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEI 157

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F +M    +  +++T    + A   I   G+G   H  A++     DV  G +L+  Y+ 
Sbjct: 158 FTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYST 217

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C  ++ +  +F ++ ERN V W+AVI GY +N R  E ++ ++ M   G+  +  T    
Sbjct: 218 CKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASA 277

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
             +C      E G    + A   + G       A + D+ ++  R  +A++     P
Sbjct: 278 FRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATL-DMYAKCDRMVDARKVFNTFP 333


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 190/589 (32%), Positives = 314/589 (53%), Gaps = 91/589 (15%)

Query: 4   LLCICRSSLSLNKLSKLHS------LAPNYLIETQKASVQKLETPAIRTDSVSCGSESDK 57
           LL  C S   LNK  +LHS      ++P+Y+IE    S+  L         V CG   + 
Sbjct: 250 LLAACASIGDLNKGKQLHSYLLKAGMSPDYIIE---GSLLDL--------YVKCGVIVEA 298

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
                ++F      NVV    ++  + +     ++  LF +M+   +RP+EFT+  ++ +
Sbjct: 299 L----EIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRT 354

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T   ++NLG+Q+H  + K G +S+++V   ++D+Y K   +++A R+ E     +VVS+
Sbjct: 355 CTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSW 414

Query: 178 TTMICGLLKRERFEDALKLFQEMP------------------------------------ 201
           T+MI G ++ E  ++AL+ F++M                                     
Sbjct: 415 TSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYV 474

Query: 202 ---HRNVVSWNAMIGGYSQTGRN-------------------------------EEAVNL 227
                +V  WNA++  Y++ GR+                               EEA+ +
Sbjct: 475 SGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEV 534

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           FI+M + G+  N  T   +I A+AN+A +  GK  HA  +K     +  V N+LIS Y K
Sbjct: 535 FIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGK 594

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CGS+ED+ + F +++ERN V+WN +I   +Q+G G EA++ F++M+  G++PN VT +G+
Sbjct: 595 CGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGV 654

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L AC+H GLVE+G  YF     E     +P+HYAC+VD+L R+G+   A++F+ ++P   
Sbjct: 655 LAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSA 714

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W+ LL  C++H N+E+GE AA+ +L L+P D +SYV+LSNA +V GKW    ++R+
Sbjct: 715 NAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRK 774

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            MK++G+ + PG SWIE+K+ VH F  GDR H +  +IY  L    +++
Sbjct: 775 MMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRL 823



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 166/339 (48%), Gaps = 32/339 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            S   +VF E+P  + V+  T+I R A+  + E A+ +F  M L    P   T  S++ +
Sbjct: 194 LSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAA 253

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             ++ DLN GKQLH++  K G+  +  +  ++LDLY+K                      
Sbjct: 254 CASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVK---------------------- 291

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               CG++      +AL++F+     NVV WN M+  Y Q     ++ +LF +M+  G+ 
Sbjct: 292 ----CGVIV-----EALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVR 342

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T PC +        + +G+  H  ++K   + D++V   LI  Y+K G ++ +  +
Sbjct: 343 PNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRI 402

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            + L  +++V+W ++I GY Q+   +EA+E F+ M++ GI P+ + L   + AC     +
Sbjct: 403 LEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAM 462

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
            +G    S+  +          +  +V+L +R GR KEA
Sbjct: 463 RQGQQIHSRVYVSGYSA-DVSIWNALVNLYARCGRSKEA 500



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 186/433 (42%), Gaps = 58/433 (13%)

Query: 41  TPAIRTDSVSCGSESDKFSS---------------VHQVFDEVPDLNVVSATTIIGRFAK 85
            P I   +++CG   D+ +                  +VF+++   + VS   ++  +A+
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 86  QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFV 145
               EEA+ L+ +M    + P+ +   SV+ + T       G+ +HA   K G  S   V
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVV 180

Query: 146 GSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
           G+A++ LY++  S+  A RV                               F EMP+ + 
Sbjct: 181 GNALIALYLRFGSLSLAERV-------------------------------FSEMPYCDR 209

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
           V++N +I  ++Q G  E A+ +F EM   G  P+  T+   + A A+I  L  GK  H+ 
Sbjct: 210 VTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSY 269

Query: 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325
            +K     D  +  SL+  Y KCG + ++L +F      N+V WN ++  Y Q     ++
Sbjct: 270 LLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKS 329

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACM 383
            + F +M   G+RPN  T   LL  C + G +  G        L      + + Y    +
Sbjct: 330 FDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIH---LLSIKTGFESDMYVSGVL 386

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPE 441
           +D+ S+ G   +A+  L  L     +  W +++ G   H   +  L  F   ++  + P+
Sbjct: 387 IDMYSKYGWLDKARRILEVLEAKDVVS-WTSMIAGYVQHEFCKEALETFKDMQLFGIWPD 445

Query: 442 DVSSYVMLSNALS 454
           ++     L++A+S
Sbjct: 446 NIG----LASAIS 454



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 1/162 (0%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA-ANIAALGM 258
           M  R   S N  + G+      E+ ++LF   +R+          CA+     ++    +
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
               HA A+      D   GN LI  YAK G ++ +  VF++L+ R+ V+W A++ GYA+
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           NG GEEA+  + +M  +G+ P    L  +L AC    L E+G
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQG 162


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/487 (37%), Positives = 273/487 (56%), Gaps = 20/487 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK---QHHYEEAIYLFSRMLLL-NIRP 106
           C   S        VF ++P+ N     TI+   A+   +H   EA+ LFS ML    ++P
Sbjct: 61  CAFSSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKP 120

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           + FTF SV+ +      L  GKQ+H    K G   + FV S ++ +Y+  + +E+A  +F
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180

Query: 167 ----------------EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
                           +   + NVV +  MI G ++    + A  LF EMP R+VVSWN 
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNV 240

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           MI GY+Q G   EA+NLF EM    + PN+ TL   + A A I AL +GK  H  A K  
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNK 300

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            ++D  +G++L+  Y+KCGS++ +L VF+ L +RN +TW+A+I  +A +GR E+AI  F 
Sbjct: 301 VEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFH 360

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            M   G+ PN V  +G+L AC+H GLVE+G S+FS          + EHY CMVDLL R+
Sbjct: 361 LMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRA 420

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450
           G  +EA+E + ++P +P    WKALLG C++H N+++GE  A  ++ L P D  SYV LS
Sbjct: 421 GHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALS 480

Query: 451 NALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           N  +  G W+ V+ +R +MK   + + PGCSWIEI   +H F+  D +H    EI A+L 
Sbjct: 481 NLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLG 540

Query: 511 SCTEQIR 517
             + ++R
Sbjct: 541 EMSMKLR 547


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 285/470 (60%), Gaps = 5/470 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E+       ++FDE+P+ N +S + +I R+++  + EEA+ LFS+M+    +P+   F  
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + +  +L  L+ G  +H   TK+G+  +VF+GS+++DLY K    ++   VF+     N
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VV + +M+ G     R E+  +LF+ +P +N VSW  +I GY +  + E+ + +F  +L 
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G  PN ST    + A A+IA+L  G + H   +K   + D+FVG +L   YAKCG +  
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACN 352
           S  VF+++ E+N ++W  +I G A++G   E++  FE M R + + PN + LL +L+AC+
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACS 561

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLV+KG  YF+   +E    +KP  +HY C+VDLLSRSGR  EA+EF+  +PF P   
Sbjct: 562 HCGLVDKGLWYFNS--MEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEAN 619

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL GC+ + + ++ E  A+++  L   + + YV+LSN  + AG+W +VSNIR+ M+
Sbjct: 620 AWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMR 679

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           EKG+ +  GCSW+E++++VH F + D +H  ++EIY  L+    +++ F+
Sbjct: 680 EKGLKKSGGCSWVEVRNQVHSFYSEDGSHSQSNEIYGTLQLLRSEMKCFK 729



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 192/390 (49%), Gaps = 43/390 (11%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+  P  NVVS T  I  F +     EA+ LF R+L   +RP++ TF SV+ +   L D 
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            LG  +     K G +  + V ++++ L +++  I+ A RVF+     +VVS+T ++   
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAY 260

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           ++     +A ++F EMP RN +SW+AMI  YSQ+G  EEA+ LF +M++EG  PN S   
Sbjct: 261 VETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFA 320

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
           C + A A++ AL  G + H    K     DVF+G+SLI  Y KCG  +D  LVFD + E+
Sbjct: 321 CTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK 380

Query: 305 NIVTWNAVICGYAQNGRG-------------------------------EEAIEFFERMR 333
           N+V WN+++ GY+ NGR                                E+ +E F  + 
Sbjct: 381 NVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLL 440

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-----ACMVDLLS 388
           ++G  PN  T   +L AC     ++KG +     K+   G+     Y       + D+ +
Sbjct: 441 VSGQTPNKSTFSSVLCACASIASLDKGMNV--HGKIIKLGI----QYDIFVGTALTDMYA 494

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           + G    +K+    +P    I  W  ++ G
Sbjct: 495 KCGDIGSSKQVFERMPEKNEIS-WTVMIQG 523



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 151/316 (47%), Gaps = 39/316 (12%)

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           S++ V + ++  Y++  ++ +A  +F++    N VS++ +I GL+K  R E+++  F+  
Sbjct: 85  SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
           P +NVVSW A I G+ + G N EA+ LF  +L  G+ PN  T    + A   +   G+G 
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 261 SFHACAVKF-------------------------------LGKLDVFVGNSLISFYAKCG 289
           S     VK                                + K DV    +++  Y + G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            + ++  +FD++ ERN ++W+A+I  Y+Q+G  EEA++ F +M   G +PN       L 
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 350 ACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           A      +  G   + + ++  ++    +     + ++DL  + G+  + +  ++DL  +
Sbjct: 325 ALASLRALSAGINIHGHVTKIGIDKDVFIG----SSLIDLYCKCGKPDDGR-LVFDLILE 379

Query: 407 PGIGFWKALLGGCQIH 422
             +  W +++GG  I+
Sbjct: 380 KNVVCWNSMVGGYSIN 395


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 174/486 (35%), Positives = 279/486 (57%), Gaps = 40/486 (8%)

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
           E+P++ V +A  +I  F + +   +A+ L+ +ML  N+ P+ +TF S+I +   +  L  
Sbjct: 41  EIPNVFVYNA--MIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRF 98

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
            + +H    + G  S+VFV ++++D Y  +  IEE+ RVF++    +V ++TTM+ GL++
Sbjct: 99  AEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVR 158

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGG-------------------------------Y 215
                 A +LF  MP RN+ +WN +I G                               Y
Sbjct: 159 VGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCY 218

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
           SQ  R  EA+ +F EM + G+ P+  T+   I A A++ AL +GK  H   ++    LDV
Sbjct: 219 SQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDV 278

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           ++G++LI  YAKCGS++ SLL+F KL E+N+  WN+VI G A +G  EEA+  F++M   
Sbjct: 279 YIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMERE 338

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGR 392
            I+PNGVT + +L ACNH GL+E+G   F+    +    PG+   EHY CMVDLLS++G 
Sbjct: 339 KIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGV---EHYGCMVDLLSKAGL 395

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
            +EA + +  +  +P    W ALL GC++H N+E+ + AA +++ L+P +   Y +L N 
Sbjct: 396 LEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNM 455

Query: 453 LSVAGKWDNVSNIRREMKEKGM-TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
            +   +W   + IR  MKE+G+  R PG SWIE++S+VH F   D++H  +DEIY++L  
Sbjct: 456 NAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKSHAASDEIYSLLAE 515

Query: 512 CTEQIR 517
              Q++
Sbjct: 516 LDGQMK 521



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 35/255 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++P  +++S TT+I  +++   + EA+ +F+ M    I P E T  +VI +   L  
Sbjct: 199 LFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGA 258

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+LGK++H +  + G   +V++GSA++D+Y K                          CG
Sbjct: 259 LDLGKEIHYYIMQHGFNLDVYIGSALIDMYAK--------------------------CG 292

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            L R     +L +F ++  +N+  WN++I G +  G  EEA+ +F +M RE + PN  T 
Sbjct: 293 SLDR-----SLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTF 347

Query: 244 PCAIIAAANIAAL--GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL-LVFDK 300
             ++++A N A L     K F +          V     ++   +K G +E++L L+   
Sbjct: 348 -VSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTM 406

Query: 301 LTERNIVTWNAVICG 315
             E N V W A++ G
Sbjct: 407 KLEPNAVIWGALLSG 421



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 126/311 (40%), Gaps = 70/311 (22%)

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I  L    R + A+  + +M   NV  +NAMI G+ Q+ +  +A+ L+++MLR  + P  
Sbjct: 21  ISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTS 80

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T P  I A   ++ L   ++ H    +      VFV  SL+ FY+  G +E+S+ VFD+
Sbjct: 81  YTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDE 140

Query: 301 LTE-------------------------------RNIVTWNAVICGYA------------ 317
           + E                               RN+ TWN +I GYA            
Sbjct: 141 MPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLF 200

Query: 318 -------------------QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
                              QN R  EA+  F  M  +GI P+ VT+  ++ AC H G ++
Sbjct: 201 NQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALD 260

Query: 359 KG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            G   + Y  Q        L     + ++D+ ++ G    +    + L  +  +  W ++
Sbjct: 261 LGKEIHYYIMQHGFN----LDVYIGSALIDMYAKCGSLDRSLLMFFKLR-EKNLFCWNSV 315

Query: 416 LGGCQIHSNVE 426
           + G  +H   E
Sbjct: 316 IEGLAVHGYAE 326



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 114/285 (40%), Gaps = 48/285 (16%)

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           +A  VK     D ++ N  IS  +    M+ ++L + ++   N+  +NA+I G+ Q+ + 
Sbjct: 2   YAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQP 61

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACN-----------HTGLVEKGYS--------- 362
            +A+E + +M    + P   T   L+ AC            H  +   G+          
Sbjct: 62  VQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSL 121

Query: 363 ---YFSQAKLEDPGML---KPEH----YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
              Y S  ++E+   +    PE     +  MV  L R G    A   L+D+  D  +  W
Sbjct: 122 VDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGR-LFDMMPDRNLATW 180

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
             L+ G      V++ E    ++ A    D+ S+  + N  S   ++     +  EM + 
Sbjct: 181 NTLIDGYARLREVDVAELLFNQMPA---RDIISWTTMINCYSQNKRFREALGVFNEMAKH 237

Query: 473 GM--------TRVPGCSW---IEIKSKVHVFVTGDRNHHMNDEIY 506
           G+        T +  C+    +++  ++H ++     H  N ++Y
Sbjct: 238 GISPDEVTMATVISACAHLGALDLGKEIHYYIM---QHGFNLDVY 279


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 174/458 (37%), Positives = 266/458 (58%), Gaps = 2/458 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTA 120
           ++FDE P  +VVS  T+IG + +     EA+ LF R++     +RP E T    +     
Sbjct: 177 RLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQ 236

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           + DL LGK+LH +    G++  V + +A++D+Y+K  S+E A  VFE   N  VVS+TTM
Sbjct: 237 MGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTM 296

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G  +    EDA  LF EMP R+V  WNA++ GY Q  + +EA+ LF EM    + PN 
Sbjct: 297 IVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNE 356

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A + + AL MG   H    +    L V +G SL+  YAKCG+++ ++ +F +
Sbjct: 357 ITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKE 416

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ++N +TW A+ICG A +G  +EAIE+F+RM   G++P+ +T +G+L AC H GLV++G
Sbjct: 417 IPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEG 476

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             +FS    +     K +HY+CM+DLL R+G   EA++ +  +P DP    W AL   C+
Sbjct: 477 RQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACR 536

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H N+ LGE AA +++ LDP D   YV+L+N  + A        +R  M+  G+ +VPGC
Sbjct: 537 MHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGC 596

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           S IE+   VH F+  D++H     IY  L   T Q++ 
Sbjct: 597 SCIELNGVVHEFIVKDKSHLDTIAIYDCLHGITLQMKH 634



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 176/384 (45%), Gaps = 74/384 (19%)

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           RP   TF  ++ +   L+    G  +     K+G  ++VFV +A +  +    S+  A R
Sbjct: 118 RPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARR 177

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           +F+++   +VVS+ T+                               IGGY ++G   EA
Sbjct: 178 LFDESPARDVVSWNTL-------------------------------IGGYVRSGLPREA 206

Query: 225 VNLFIEMLREG--LVPNHSTLPCAIIAAANIAALGMGKSFHA--------CAVKFLGK-L 273
           + LF  ++ +G  + P+  T+  A+   A +  L +GK  H         C V+ +   +
Sbjct: 207 LELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVM 266

Query: 274 DVFVG----------------------NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           D++V                        ++I  +A+ G MED+ ++FD++ ER++  WNA
Sbjct: 267 DMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNA 326

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAK 368
           ++ GY QN +G+EAI  F  M+ + + PN +T++ LL AC+  G +E G   + Y  + +
Sbjct: 327 LMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQ 386

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV-EL 427
           L     L       +VD+ ++ G  K+A     ++P D     W A++ G   H +  E 
Sbjct: 387 L----YLSVALGTSLVDMYAKCGNIKKAICIFKEIP-DKNALTWTAMICGLANHGHADEA 441

Query: 428 GEFAARRI-LALDPEDVSSYVMLS 450
            E+  R I L L P++++   +LS
Sbjct: 442 IEYFQRMIDLGLQPDEITFIGVLS 465


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 175/459 (38%), Positives = 265/459 (57%), Gaps = 2/459 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTA 120
           ++FDE P  +VVS  T+IG + +     EA+ LF R+      +RP E T    +     
Sbjct: 177 RLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQ 236

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           + DL LGK+LH +    G++  V + +A++D+Y+K  S+E A  VFE   N   VS+TTM
Sbjct: 237 MGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTM 296

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G  +    EDA  LF EMP R+V  WNA++ GY Q  + +EA+ LF EM +  + PN 
Sbjct: 297 IVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNE 356

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A + + AL MG   H    +    L V +G SL+  YAKCG+++ ++ VF++
Sbjct: 357 ITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNE 416

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +  +N +TW ++ICG A +G  +EAIE+F+RM   G++P+ +T +G+L AC H GLVE G
Sbjct: 417 IPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAG 476

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             +FS    +     K +HY+CM+DLL R+G   EA++ +  +P DP    W AL   C+
Sbjct: 477 RQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACR 536

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H N+ LGE AA +++ LDP D   YV+L+N  + A        +R  M+  G+ +VPGC
Sbjct: 537 MHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGC 596

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           S IE+   VH F+  D++H   + IY  L   T Q+R  
Sbjct: 597 SCIELNGVVHEFIVKDKSHLDTNAIYDCLHEITLQMRHI 635



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 175/384 (45%), Gaps = 74/384 (19%)

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           RP   TF  +I +   L+  + G  +     K+G  ++VFV +A +  +     +  A R
Sbjct: 118 RPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARR 177

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
                                          LF E P R+VVSWN +IGGY ++G   EA
Sbjct: 178 -------------------------------LFDESPVRDVVSWNTLIGGYVRSGLPREA 206

Query: 225 VNLFIEMLREG--LVPNHSTLPCAIIAAANIAALGMGKSFHA--------CAVKFLGK-L 273
           + LF  +  +G  + P+  T+  A+   A +  L +GK  H         C V+ +   +
Sbjct: 207 LELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVM 266

Query: 274 DVFVG----------------------NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           D++V                        ++I  +A+ G MED+ ++FD++ ER++  WNA
Sbjct: 267 DMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNA 326

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAK 368
           ++ GY QN +G+EAI  F  M+ + + PN +T++ LL AC+  G +E G   + Y  + K
Sbjct: 327 LMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHK 386

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV-EL 427
           L     L       +VD+ ++ G  K+A     ++P    +  W +++ G   H +  E 
Sbjct: 387 LH----LSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALT-WTSMICGLANHGHADEA 441

Query: 428 GEFAARRI-LALDPEDVSSYVMLS 450
            E+  R I L L P++++   +LS
Sbjct: 442 IEYFQRMIDLGLQPDEITFIGVLS 465



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 3/143 (2%)

Query: 221 NEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
           +   + L+  +L  G   P+H T P  I A A +     G +      K     DVFV N
Sbjct: 101 DRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVN 160

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING--I 337
           + + F++  G M  +  +FD+   R++V+WN +I GY ++G   EA+E F R+  +G  +
Sbjct: 161 AAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAV 220

Query: 338 RPNGVTLLGLLWACNHTGLVEKG 360
           RP+ VT++G +  C   G +E G
Sbjct: 221 RPDEVTVIGAVSGCAQMGDLELG 243



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 35/183 (19%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM--------- 99
           V CGS        + VF+ + +   VS TT+I   A+    E+A  LF  M         
Sbjct: 270 VKCGS----LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWN 325

Query: 100 LLL----------------------NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV 137
            L+                       + P+E T  +++ + + L  L +G  +H +  + 
Sbjct: 326 ALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRH 385

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
            L  +V +G++++D+Y K  +I++A  VF +    N +++T+MICGL      ++A++ F
Sbjct: 386 KLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYF 445

Query: 198 QEM 200
           Q M
Sbjct: 446 QRM 448


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 172/486 (35%), Positives = 283/486 (58%), Gaps = 23/486 (4%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           + CG    +     + F+E+   +V     ++  +  +  +++A+ +F +M+L  ++P+ 
Sbjct: 157 IKCG----RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNS 212

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            T  S + + T L  L  G+++H +  KV  L S++ VG++++D Y K  S+E A R F 
Sbjct: 213 ITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFG 272

Query: 168 DTHNPNVVSYTTMIC------------GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
                ++VS+  M+              L   +R   A  +F E+  R+VV WN++I   
Sbjct: 273 MIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISAC 332

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
           +Q+GR+  A++L  EM    +  N  T+  A+ A + +AAL  GK  H   ++       
Sbjct: 333 AQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCN 392

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           F+ NSLI  Y +CGS++ S  +FD + +R++V+WN +I  Y  +G G +A+  F++ R  
Sbjct: 393 FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTM 452

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGR 392
           G++PN +T   LL AC+H+GL+E+G+ YF   K E   DP +   E YACMVDLLSR+G+
Sbjct: 453 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAV---EQYACMVDLLSRAGQ 509

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
           F E  EF+  +PF+P    W +LLG C+IH N +L E+AAR +  L+P+   +YV+++N 
Sbjct: 510 FNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANI 569

Query: 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
            S AG+W++ + IR  MKE+G+T+ PGCSWIE+K K+H FV GD +H + ++I A + S 
Sbjct: 570 YSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESL 629

Query: 513 TEQIRE 518
              I+E
Sbjct: 630 YFDIKE 635



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 159/327 (48%), Gaps = 40/327 (12%)

Query: 14  LNKLSKLHSLAPNYLIETQKA--SVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           L K  KL++L   + +  Q     V   E    R   V C  ++       ++FD++ + 
Sbjct: 17  LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC--QTGCVEDARRMFDKMSER 74

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NV S T I+  +     YEE I LF  M+   +RP  F F  V  + + L++  +GK ++
Sbjct: 75  NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 134

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            +   +G + N  V  +ILD++IK   ++ A R FE+    +V  +  M+ G   +  F+
Sbjct: 135 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 194

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
            AL                               N+F +M+ EG+ PN  T+  A+ A  
Sbjct: 195 KAL-------------------------------NVFRKMVLEGVKPNSITIASAVSACT 223

Query: 252 NIAALGMGKSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
           N++ L  G+  H   +K + +L  D+ VGNSL+ +YAKC S+E +   F  + + ++V+W
Sbjct: 224 NLSLLRHGREIHGYCIK-VEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSW 282

Query: 310 NAV--ICGYAQNGRGEEAIEFFERMRI 334
           NA+  + G+ Q G G+ A+EFF+RM I
Sbjct: 283 NAMLAVTGFTQYGDGKAALEFFQRMHI 309



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 161/371 (43%), Gaps = 47/371 (12%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + S++     L +L LG Q+HA     G+    F+GS +L++Y +   +E+A R      
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARR------ 66

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                    +F +M  RNV SW A++  Y   G  EE + LF  
Sbjct: 67  -------------------------MFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYL 101

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+ EG+ P+H   P    A + +    +GK  +   +    + +  V  S++  + KCG 
Sbjct: 102 MVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGR 161

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M+ +   F+++  +++  WN ++ GY   G  ++A+  F +M + G++PN +T+   + A
Sbjct: 162 MDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSA 221

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C +  L+  G   + Y  + +  D  +L       +VD  ++  R  E     + +    
Sbjct: 222 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNS---LVDYYAKC-RSVEVARRKFGMIKQT 277

Query: 408 GIGFWKALL---GGCQIHSNVELGEFAARRILA------LDPEDVSSYVMLSNALSVAGK 458
            +  W A+L   G  Q        EF  R  +A      L   DV  +  + +A + +G+
Sbjct: 278 DLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGR 337

Query: 459 WDNVSNIRREM 469
             N  ++ REM
Sbjct: 338 SVNALDLLREM 348


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/449 (37%), Positives = 260/449 (57%), Gaps = 37/449 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD +   + VS   II    +  + EE +  F+ M+   + P +FT+GSV+ +    + 
Sbjct: 440 LFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQA 499

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN G ++H    K G+  + FVG+A++D+Y K   IE+A ++ + T              
Sbjct: 500 LNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTE------------- 546

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                              + +VSWNA+I G+S   ++E+A   F  ML  G+ P++ T 
Sbjct: 547 ------------------QKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTY 588

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A +G+GK  HA  +K   + DV++ ++L+  Y+KCG+M+DS L+F+K   
Sbjct: 589 AAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPN 648

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ VTWNA++CGYA +G GEEA++ FE M++  ++PN  T + +L AC H GLV+KG  Y
Sbjct: 649 RDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHY 708

Query: 364 FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F     E   DP   + EHY+CMVD+L RSGR  EA   +  +PF+     W+ LL  C+
Sbjct: 709 FDVMLSEYGLDP---QSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCK 765

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH NVE+ E A R +L LDP+D S+ V+LSN  + AG W NVS +R+ M+   + + PGC
Sbjct: 766 IHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGC 825

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           SWIE+K +VH F+ GD+ H  ++EIY  L
Sbjct: 826 SWIELKDEVHAFLVGDKGHPRDEEIYEKL 854



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 152/295 (51%), Gaps = 1/295 (0%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF  +    +    LN GKQ HA     G +   FV + ++ +YIK   ++ A +VF+  
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           +  +VVSY ++I G       + A K F EMP R+VVSWN++I G+ Q G   +++++F+
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           EM R G+  + ++L   + A   +    MG   H   VKF    DV  G++L+  YAKC 
Sbjct: 171 EMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCK 230

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++DSL VF +L E+N V+W+A+I G  QN R  E +E F+ M+  G+  +      L  
Sbjct: 231 RLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFR 290

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +C     +  G    S A     G       A + D+ ++ GR  +A++ L  +P
Sbjct: 291 SCAALSALRLGKELHSHALKSAFGSDIIVGTATL-DMYAKCGRMADAQKVLSSMP 344



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 198/424 (46%), Gaps = 61/424 (14%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF E+P+ N VS + +I    +     E + LF  M  + +  S+  + S+  S  AL  
Sbjct: 238 VFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSA 297

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGK+LH+ A K    S++ VG+A LD+Y K                          CG
Sbjct: 298 LRLGKELHSHALKSAFGSDIIVGTATLDMYAK--------------------------CG 331

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                R  DA K+   MP  ++ S+NA+I GY+++ R  +A+  F  +L+ GL  +  TL
Sbjct: 332 -----RMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITL 386

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
             A+ A A+I     G+  H  AVK +   ++ V N+++  Y KC ++ ++  +FD +  
Sbjct: 387 SGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMER 446

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN----------- 352
           R+ V+WNA+I    QNG  EE +  F  M  + + P+  T   +L AC            
Sbjct: 447 RDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEI 506

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           HT +++ G  + S               A +VD+  + G  ++A + ++D      +  W
Sbjct: 507 HTRIIKSGMGFDSFVG------------AALVDMYCKCGMIEKADK-IHDRTEQKTMVSW 553

Query: 413 KALLGGCQIHSNVELG-EFAARRI-LALDPEDVSSYVMLSNALSVA----GKWDNVSNIR 466
            A++ G  +    E   +F +R + + ++P++ +   +L    ++A    GK  +   I+
Sbjct: 554 NAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIK 613

Query: 467 REMK 470
           +E++
Sbjct: 614 QELQ 617



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 169/385 (43%), Gaps = 44/385 (11%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG  +D      +V   +P  ++ S   II  +A+     +A+  F  +L   +   E T
Sbjct: 330 CGRMAD----AQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEIT 385

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
               + +  ++     G+Q+H  A K    SN+ V +AILD+Y K  ++ EA+       
Sbjct: 386 LSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEAS------- 438

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                    LF  M  R+ VSWNA+I    Q G  EE +  F  
Sbjct: 439 ------------------------DLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFAS 474

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+   + P+  T    + A A   AL  G   H   +K     D FVG +L+  Y KCG 
Sbjct: 475 MIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGM 534

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E +  + D+  ++ +V+WNA+I G++   + E+A +FF RM   G+ P+  T   +L  
Sbjct: 535 IEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDT 594

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C +   V  G    +Q   ++   L+ + Y C  +VD+ S+ G  ++++      P +  
Sbjct: 595 CANLATVGLGKQIHAQIIKQE---LQSDVYICSTLVDMYSKCGNMQDSQLMFEKAP-NRD 650

Query: 409 IGFWKALLGGCQIHSNVELGEFAAR 433
              W A+L G   H    LGE A +
Sbjct: 651 FVTWNAMLCGYAHHG---LGEEALK 672



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 191/404 (47%), Gaps = 39/404 (9%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           +I +   SCG    +     + F E+P+ +VVS  ++I  F +     ++I +F  M   
Sbjct: 120 SIISGYASCG----EMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRC 175

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            +     +   V+ +  ALE+ ++G Q+H    K G   +V  GSA+L +Y K   ++++
Sbjct: 176 GVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDS 235

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF +    N VS++ MI G ++ +R  + L+LF+EM    V        G SQ+    
Sbjct: 236 LSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGV--------GVSQS---- 283

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
               ++  + R               + A ++AL +GK  H+ A+K     D+ VG + +
Sbjct: 284 ----IYASLFR---------------SCAALSALRLGKELHSHALKSAFGSDIIVGTATL 324

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKCG M D+  V   + + ++ ++NA+I GYA++ RG +A++ F+ +   G+  + +
Sbjct: 325 DMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEI 384

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           TL G L AC       +G      A ++   M        ++D+  +     EA + L+D
Sbjct: 385 TLSGALNACASIRGDLEGRQVHGLA-VKSISMSNICVANAILDMYGKCKALAEASD-LFD 442

Query: 403 LPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVS 444
           +        W A++  C+ + N E  L  FA+     ++P+D +
Sbjct: 443 MMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFT 486



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 100/190 (52%), Gaps = 5/190 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++ D      +VS   II  F+     E+A   FSRML + + P  FT+ +V+ +   L 
Sbjct: 540 KIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLA 599

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            + LGKQ+HA   K  LQS+V++ S ++D+Y K  +++++  +FE   N + V++  M+C
Sbjct: 600 TVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLC 659

Query: 183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLV 237
           G       E+ALKLF+ M   NV     ++ +++   +  G  ++ ++ F  ML E GL 
Sbjct: 660 GYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLD 719

Query: 238 PNHSTLPCAI 247
           P      C +
Sbjct: 720 PQSEHYSCMV 729


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/456 (38%), Positives = 268/456 (58%), Gaps = 35/456 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+E+   + VS   II    +  + E+ + LF  ML   + P EFT+GSV+ +    + 
Sbjct: 370 VFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQA 429

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN G ++H    K  +  + FVG A++D+Y K                          CG
Sbjct: 430 LNCGMEIHNRIIKSRMGLDSFVGIALIDMYSK--------------------------CG 463

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           ++     E A KL   +  + VVSWNA+I G+S   ++EEA   F +ML  G+ P++ T 
Sbjct: 464 MM-----EKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTY 518

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+  + +GK  HA  +K   + D ++ ++L+  Y+KCG+M+D  L+F+K   
Sbjct: 519 ATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN 578

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ VTWNA++CGYAQ+G GEEA++ FE M++  ++PN  T L +L AC H GLVEKG  Y
Sbjct: 579 RDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHY 638

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F  + L + G L P  EHY+C+VD++ RSG+  +A E +  +PF+     W+ LL  C+I
Sbjct: 639 F-HSMLSNYG-LDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKI 696

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVE+ E AA  IL L+PED ++YV+LSN  + AG W+ V+ +R+ M+  G+ + PGCS
Sbjct: 697 HGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCS 756

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           WIEIKS+VH F+ GD+ H  + EIY  L   T++++
Sbjct: 757 WIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMK 792



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 198/432 (45%), Gaps = 59/432 (13%)

Query: 30  ETQKASVQKLETP--AIRTD--------------SVSCGSESDKFSSVHQVFDEVPDLNV 73
           E QKA V  L+    A++TD               + C + SD     +Q+F+ +P+ N+
Sbjct: 222 EMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSD---CSNQLFNSLPNHNL 278

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
            S   II  +A+     EA+ +F  +    +   E +      +   ++    G Q+H  
Sbjct: 279 QSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGL 338

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
           + K   QSN+ V +AILD+Y K  ++ EA  VFE                          
Sbjct: 339 SMKSLCQSNICVANAILDMYGKCGALVEACLVFE-------------------------- 372

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
                EM  R+ VSWNA+I  + Q G  E+ ++LF+ ML+ G+ P+  T    + A A  
Sbjct: 373 -----EMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGW 427

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
            AL  G   H   +K    LD FVG +LI  Y+KCG ME +  + D+L E+ +V+WNA+I
Sbjct: 428 QALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAII 487

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            G++   + EEA + F +M   G+ P+  T   +L  C +   VE G    +Q   ++  
Sbjct: 488 SGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKE-- 545

Query: 374 MLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
            L+ + Y  + +VD+ S+ G  ++ +      P +     W A++ G   H    LGE A
Sbjct: 546 -LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP-NRDFVTWNAMVCGYAQHG---LGEEA 600

Query: 432 ARRILALDPEDV 443
            +    +  E+V
Sbjct: 601 LKIFEYMQLENV 612



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 78/187 (41%), Gaps = 18/187 (9%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF  +    +  + L  GKQ HA       +  VFV + ++ +YIK S +  A +VF+  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF- 228
              + VS+  M+ G   R     A KLF  MP                 G     V LF 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP-----------------GTGCGVVELFD 146

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             M R G V + +T    + + +++   G G   H  AVK     DV  G++L+  YAKC
Sbjct: 147 FRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKC 206

Query: 289 GSMEDSL 295
               D L
Sbjct: 207 CVQNDDL 213



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 43/82 (52%)

Query: 255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
           AL  GK  HA  +    K  VFV N LI  Y KC  +  +  VFD + +R+ V+WNA++ 
Sbjct: 57  ALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLF 116

Query: 315 GYAQNGRGEEAIEFFERMRING 336
           GYA  G    A + F+ M   G
Sbjct: 117 GYAGRGDIGVAQKLFDAMPGTG 138



 Score = 39.7 bits (91), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+  D       +F++ P+ + V+   ++  +A+    EEA+ +F  M L N++P+  T
Sbjct: 563 CGNMQD----FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHAT 618

Query: 111 FGSVIPSSTALEDLNLG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           F +V+ +   +  +  G    H+  +  GL   +   S ++D+  +   + +A  + E
Sbjct: 619 FLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIE 676


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 177/456 (38%), Positives = 268/456 (58%), Gaps = 35/456 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+E+   + VS   II    +  + E+ + LF  ML   + P EFT+GSV+ +    + 
Sbjct: 433 VFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQA 492

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN G ++H    K  L  + FVG A++D+Y K                          CG
Sbjct: 493 LNCGMEIHNRIIKSRLGLDSFVGIALIDMYSK--------------------------CG 526

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           ++     E A KL   +  + VVSWNA+I G+S   ++EEA   F +ML  G+ P++ T 
Sbjct: 527 MM-----EKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTY 581

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+  + +GK  HA  +K   + D ++ ++L+  Y+KCG+M+D  L+F+K   
Sbjct: 582 ATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN 641

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ VTWNA++CGYAQ+G GEEA++ FE M++  ++PN  T L +L AC H GLVEKG  Y
Sbjct: 642 RDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHY 701

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F  + L + G L P  EHY+C+VD++ RSG+  +A E +  +PF+     W+ LL  C+I
Sbjct: 702 F-HSMLSNYG-LDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKI 759

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVE+ E AA  IL L+PED ++YV+LSN  + AG W+ V+ +R+ M+  G+ + PGCS
Sbjct: 760 HGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCS 819

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           WIEIKS+VH F+ GD+ H  + EIY  L   T++++
Sbjct: 820 WIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMK 855



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 187/402 (46%), Gaps = 40/402 (9%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T ++    + +  S   ++F+ +P+ N+ S   II  +A+     EA+ +F  +    
Sbjct: 312 IGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSG 371

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +   E +      +   ++    G Q+H  + K   QSN+ V +AILD+Y K  ++ EA 
Sbjct: 372 LGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEAC 431

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            VFE                               EM  R+ VSWNA+I  + Q G  E+
Sbjct: 432 LVFE-------------------------------EMVSRDAVSWNAIIAAHEQNGNEEK 460

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            ++LF+ ML+ G+ P+  T    + A A   AL  G   H   +K    LD FVG +LI 
Sbjct: 461 TLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALID 520

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCG ME +  + D+L E+ +V+WNA+I G++   + EEA + F +M   G+ P+  T
Sbjct: 521 MYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFT 580

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLY 401
              +L  C +   VE G    +Q   ++   L+ + Y  + +VD+ S+ G  ++ +    
Sbjct: 581 YATILDTCANLVTVELGKQIHAQIIKKE---LQSDAYISSTLVDMYSKCGNMQDFQLIFE 637

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443
             P +     W A++ G   H    LGE A +    +  E+V
Sbjct: 638 KAP-NRDFVTWNAMVCGYAQHG---LGEEALKIFEYMQLENV 675



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 142/295 (48%), Gaps = 1/295 (0%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF  +    +  + L  GKQ HA       +  VFV + ++ +YIK S +E A +VF+  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              + VS+  M+ G   R     A KLF  MP R+VVSWN++I GY   G + + +++F+
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M R G V + +T    + + +++   G G   H  AVK     DV  G++L+  YAKC 
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++ S+  F  + E+N V+W+A+I G  QN      +E F+ M+  G+  +  T   +  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +C     +  G      A   D G       A + D+  +     +A++    LP
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATL-DMYMKCNNLSDAQKLFNSLP 337



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/485 (23%), Positives = 212/485 (43%), Gaps = 78/485 (16%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++FD +P+ +VVS  ++I  +     + + I +F +M  +       TF  V+ S ++L
Sbjct: 128 QKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSL 187

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           ED   G Q+H  A K+G   +V  GSA+LD+Y K   ++ + + F      N VS++ +I
Sbjct: 188 EDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAII 247

Query: 182 CGLLKRERFEDALKLFQEMPH--------------------------------------- 202
            G ++ +     L+LF+EM                                         
Sbjct: 248 AGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFG 307

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK-- 260
            +VV   A +  Y +     +A  LF  +    L   ++ +     +   I ALGM +  
Sbjct: 308 TDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLL 367

Query: 261 --------------SFHACAV---------------KFLGKLDVFVGNSLISFYAKCGSM 291
                         +F ACAV               K L + ++ V N+++  Y KCG++
Sbjct: 368 QKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGAL 427

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            ++ LVF+++  R+ V+WNA+I  + QNG  E+ +  F  M  +G+ P+  T   +L AC
Sbjct: 428 VEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC 487

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
                +  G    ++      G+      A ++D+ S+ G  ++A E L+D   +  +  
Sbjct: 488 AGWQALNCGMEIHNRIIKSRLGLDSFVGIA-LIDMYSKCGMMEKA-EKLHDRLAEQTVVS 545

Query: 412 WKALLGGCQIHSNVELGE--FAARRILALDPEDVSSYVML---SNALSVA-GKWDNVSNI 465
           W A++ G  +    E  +  F+    + +DP++ +   +L   +N ++V  GK  +   I
Sbjct: 546 WNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQII 605

Query: 466 RREMK 470
           ++E++
Sbjct: 606 KKELQ 610



 Score = 39.3 bits (90), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+  D       +F++ P+ + V+   ++  +A+    EEA+ +F  M L N++P+  T
Sbjct: 626 CGNMQD----FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHAT 681

Query: 111 FGSVIPSSTALEDLNLG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           F +V+ +   +  +  G    H+  +  GL   +   S ++D+  +   + +A  + E
Sbjct: 682 FLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIE 739


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/448 (37%), Positives = 269/448 (60%), Gaps = 33/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F+ + D + ++ TT++  F +     EA+ +F RM    I   ++TFGS++ +  AL 
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GKQ+HA+  +     NVFVGSA++D+Y K  SI+ A  VF                
Sbjct: 287 ALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVF---------------- 330

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                          + M  +N++SW A+I GY Q G +EEAV +F EM R+G+ P+  T
Sbjct: 331 ---------------RRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I + AN+A+L  G  FH  A+       + V N+L++ Y KCGS+ED+  +FD+++
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMS 435

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             + V+W A++ GYAQ GR +E I+ FE+M   G++P+GVT +G+L AC+  G VEKG S
Sbjct: 436 FHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS 495

Query: 363 YFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF   + +D G++   +HY CM+DL SRSG+ KEA+EF+  +P  P    W  LL  C++
Sbjct: 496 YFHSMQ-KDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRL 554

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
             ++E+G++AA  +L +DP++ +SYV+L +  +  G+W+ V+ +RR M+++ + + PGCS
Sbjct: 555 RGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCS 614

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           WI+ K+KVH+F   D++H  +  IY  L
Sbjct: 615 WIKYKNKVHIFSADDQSHPCSKGIYEKL 642



 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 205/367 (55%), Gaps = 12/367 (3%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVI 115
            S +  +F  +   ++VS   +I  F+    + +A+ ++  +L  +  +RPS  T  +++
Sbjct: 88  LSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMV 147

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            +++AL D  LGKQ H    ++G  +N FVGS ++D+Y K+S + +A R F++  + NVV
Sbjct: 148 MAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVV 207

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
            Y TMI GLL+ +  E+A +LF+ M  R+ ++W  M+ G++Q G   EA+ +F  M  +G
Sbjct: 208 MYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQG 267

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           +  +  T    + A   ++AL  GK  HA  ++     +VFVG++L+  Y+KC S++ + 
Sbjct: 268 IAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAE 327

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VF ++T +NI++W A+I GY QNG  EEA+  F  M+ +GI P+  TL  ++ +C +  
Sbjct: 328 TVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLA 387

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYA----CMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
            +E+G  +   A +   G++   HY      +V L  + G  ++A     ++ F   +  
Sbjct: 388 SLEEGAQFHCLALVS--GLM---HYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS- 441

Query: 412 WKALLGG 418
           W AL+ G
Sbjct: 442 WTALVSG 448



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 163/350 (46%), Gaps = 51/350 (14%)

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           +L  Y K      A RVF+   +PN+ +Y  ++  L       D   LF  M  R++VS+
Sbjct: 47  LLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSY 106

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLR--EGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           NA+I G+S  G + +AV +++ +L+    + P+  T+   ++AA+ +    +GK FH C 
Sbjct: 107 NAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFH-CQ 165

Query: 267 VKFLG-KLDVFVGNSLISFYAK-------------------------------CGSMEDS 294
           +  LG   + FVG+ L+  YAK                               C  +E++
Sbjct: 166 ILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEA 225

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             +F+ +T+R+ +TW  ++ G+ QNG   EA+E F RMR  GI  +  T   +L AC   
Sbjct: 226 RRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGAL 285

Query: 355 GLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
             +E+G   ++Y  + + +D   +     + +VD+ S+    K A+     +     I  
Sbjct: 286 SALEQGKQIHAYIIRTRYDDNVFVG----SALVDMYSKCRSIKLAETVFRRMTCKNIIS- 340

Query: 412 WKALL-----GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
           W AL+      GC   S   +  F+  +   +DP+D +   ++S+  ++A
Sbjct: 341 WTALIVGYGQNGC---SEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLA 387



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D     H++FDE+   + VS T ++  +A+    +E I LF +ML   ++P   T
Sbjct: 421 CGSIED----AHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVT 476

Query: 111 FGSVIPSSTALEDLNLGKQ-LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           F  V+ + +    +  G+   H+     G+       + ++DLY +   ++EA    +  
Sbjct: 477 FIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQM 536

Query: 170 -HNPNVVSYTTMICGLLKRERFED---ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
             +P+ + + T++     R   E    A +   E+  +N  S+  +   ++  G+  E  
Sbjct: 537 PMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVA 596

Query: 226 NL 227
            L
Sbjct: 597 QL 598


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/443 (38%), Positives = 281/443 (63%), Gaps = 35/443 (7%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           + V +VF+E+P  +V+  + +I R+A+ +   EA+ LF +M    + P++FTF SV+ S 
Sbjct: 194 NDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSC 253

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
            ++E+L LGKQ+H    KVGL  NVFV +A++D+Y K                       
Sbjct: 254 ASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAK----------------------- 290

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
              CG     R ++++KLF E+P+RN V+WN MI GY Q+G  ++A++L+  ML   +  
Sbjct: 291 ---CG-----RLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQA 342

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  T    + A A++AA+ +G   H+ ++K +   DV VGN+LI  YAKCGS++++ LVF
Sbjct: 343 SEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVF 402

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D L+ER+ ++WNA+I GY+ +G   EA++ F+ M+     PN +T + +L AC++ GL++
Sbjct: 403 DMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLD 462

Query: 359 KGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
            G +YF ++ ++D G ++P  EHY CMV LL RSG   +A + + ++P +P +  W+ALL
Sbjct: 463 IGQNYF-KSMVQDYG-IEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALL 520

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C IH++V+LG  +A++IL +DP+D +++V+LSN  +   +W++V+++R+ MK KG+ +
Sbjct: 521 GACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKK 580

Query: 477 VPGCSWIEIKSKVHVFVTGDRNH 499
            PG SWIE +  VH F  GD +H
Sbjct: 581 EPGLSWIENQGIVHYFSVGDTSH 603



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 163/340 (47%), Gaps = 38/340 (11%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +PD N VS  T+I  + +    +E + LFSR+       + F F +++    ++E   L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
             LHA   K+G +SN FVG+A++D Y    S+  A + F+            + C     
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFD-----------AIAC----- 104

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                          +++VSW  M+  Y++  R ++++ LF EM   G  PNH T    +
Sbjct: 105 ---------------KDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVL 149

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A   + A  +GKS H C +K   ++D++VG  L+  Y K G   D L VF+++ + +++
Sbjct: 150 KACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVI 209

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC---NHTGLVEKGYSYF 364
            W+ +I  YAQ+ +  EA+E F +MR   + PN  T   +L +C    +  L ++ + + 
Sbjct: 210 PWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHV 269

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
            +  L+    +       ++D+ ++ GR   + +   +LP
Sbjct: 270 LKVGLDGNVFVSNA----LMDVYAKCGRLDNSMKLFMELP 305


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 172/500 (34%), Positives = 282/500 (56%), Gaps = 46/500 (9%)

Query: 20  LHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTI 79
           +H+    Y  E        L T  ++  SV  G          +VF+   + +++S   +
Sbjct: 453 IHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGC---------RVFEATTNRDLISWNAL 503

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           +  F      +  + +F++ML     P+ +TF S++ S ++L D++LGKQ+HA   K  L
Sbjct: 504 LSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSL 563

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF-EDALKLFQ 198
             N FVG+A++D+Y K                                 RF EDA  +F 
Sbjct: 564 DGNDFVGTALVDMYAK--------------------------------NRFLEDAETIFN 591

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            +  R++ +W  ++ GY+Q G+ E+AV  FI+M REG+ PN  TL  ++   + IA L  
Sbjct: 592 RLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDS 651

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+  H+ A+K     D+FV ++L+  YAKCG +ED+ +VFD L  R+ V+WN +ICGY+Q
Sbjct: 652 GRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQ 711

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP- 377
           +G+G +A++ FE M   G  P+ VT +G+L AC+H GL+E+G  +F+   L     + P 
Sbjct: 712 HGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNS--LSKIYGITPT 769

Query: 378 -EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436
            EHYACMVD+L R+G+F E + F+ ++     +  W+ +LG C++H N+E GE AA ++ 
Sbjct: 770 IEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLF 829

Query: 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGD 496
            L+PE  S+Y++LSN  +  G WD+V+N+R  M  +G+ + PGCSW+E+  +VHVF++ D
Sbjct: 830 ELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHD 889

Query: 497 RNHHMNDEIYAVLRSCTEQI 516
            +H    EI+  L+   +++
Sbjct: 890 GSHPKIREIHLKLQDLHQKL 909



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 157/300 (52%), Gaps = 31/300 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF E+P+ +VVS T +I  F  + +   A+ LF  M    +  +EFT+ + + + +   
Sbjct: 184 KVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCL 243

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL  GKQ+HA A KVG  S++FVGSA++DLY K   +  A RVF              +C
Sbjct: 244 DLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVF--------------LC 289

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            MP +N VSWNA++ G++Q G  E+ +NLF  M    +  +  T
Sbjct: 290 -----------------MPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFT 332

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   +   AN   L  G+  H+ A++   +LD F+   L+  Y+KCG   D+L VF ++ 
Sbjct: 333 LSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE 392

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           + ++V+W+A+I    Q G+  EA E F+RMR +G+ PN  TL  L+ A    G +  G S
Sbjct: 393 DPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGES 452



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 182/384 (47%), Gaps = 42/384 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF  +P  N VS   ++  FA+    E+ + LF RM    I  S+FT  +V+       
Sbjct: 285 RVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSG 344

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +L  G+ +H+ A ++G + + F+   ++D+Y K                          C
Sbjct: 345 NLRAGQIVHSLAIRIGCELDEFISCCLVDMYSK--------------------------C 378

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL       DALK+F  +   +VVSW+A+I    Q G++ EA  +F  M   G++PN  T
Sbjct: 379 GLAG-----DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFT 433

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + AA ++  L  G+S HAC  K+  + D  V N+L++ Y K GS++D   VF+  T
Sbjct: 434 LASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATT 493

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R++++WNA++ G+  N   +  +  F +M   G  PN  T + +L +C+    V+ G  
Sbjct: 494 NRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ 553

Query: 363 YFSQA---KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
             +Q     L+    +       +VD+ +++ RF E  E +++      +  W  ++ G 
Sbjct: 554 VHAQIVKNSLDGNDFVG----TALVDMYAKN-RFLEDAETIFNRLIKRDLFAWTVIVAG- 607

Query: 420 QIHSNVELGEFAARRILALDPEDV 443
             ++    GE A +  + +  E V
Sbjct: 608 --YAQDGQGEKAVKCFIQMQREGV 629



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 146/306 (47%), Gaps = 33/306 (10%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           +  ++ +  +  DLN GK +H    K G+  +  + ++++++Y K  S   A +VF    
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF---- 186

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                       E+P R+VVSW A+I G+   G    AVNLF E
Sbjct: 187 ---------------------------GEIPERDVVSWTALITGFVAEGYGSGAVNLFCE 219

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M REG+  N  T   A+ A +    L  GK  HA A+K     D+FVG++L+  YAKCG 
Sbjct: 220 MRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGE 279

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M  +  VF  + ++N V+WNA++ G+AQ G  E+ +  F RM  + I  +  TL  +L  
Sbjct: 280 MVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKG 339

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C ++G +  G    S A +     L      C+VD+ S+ G   +A +    +  DP + 
Sbjct: 340 CANSGNLRAGQIVHSLA-IRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVV 397

Query: 411 FWKALL 416
            W A++
Sbjct: 398 SWSAII 403



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 4/169 (2%)

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A+   L  GK+ H   +K     D  + NSL++ YAKCGS   +  VF ++ ER++V+W 
Sbjct: 139 ASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWT 198

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-KL 369
           A+I G+   G G  A+  F  MR  G+  N  T    L AC+    +E G    ++A K+
Sbjct: 199 ALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKV 258

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            D   L     + +VDL ++ G    A+     +P    +  W ALL G
Sbjct: 259 GDFSDLFVG--SALVDLYAKCGEMVLAERVFLCMPKQNAVS-WNALLNG 304


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/445 (36%), Positives = 270/445 (60%), Gaps = 42/445 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +  HQ+FD++P  NV+S TT+I  ++K   +++A+ L   ML   +RP+ +T+ SV+ +
Sbjct: 64  LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRA 123

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              + D+   + LH    K GL+S+V+V SA++D++ KL               P     
Sbjct: 124 CNGMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGE-------------P----- 162

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                        EDAL +F EM   + + WN++IGG++Q  R++ A+ LF  M R G +
Sbjct: 163 -------------EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 209

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
              +TL   + A   +A L +G   H   VK+    D+ + N+L+  Y KCGS+ED+  V
Sbjct: 210 AEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILNNALVDMYCKCGSLEDARRV 267

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++ ER+++TW+ +I G AQNG  +EA++ FE M+ +G +PN +T++G+L+AC+H GL+
Sbjct: 268 FNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLL 327

Query: 358 EKGYSYF-SQAKLE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           E G+ YF S  KL   +PG    EHY CM+DLL ++G+  +A + L ++  +P    W+ 
Sbjct: 328 EDGWYYFRSMKKLYGINPG---REHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRT 384

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG C++  N+ L E+AA++++ALDPED  +Y +LSN  + + KWD+V  IR+ M++ G+
Sbjct: 385 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGI 444

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNH 499
            + PGCSWIE+  ++H F+ GD +H
Sbjct: 445 KKEPGCSWIEVNKQIHAFIIGDESH 469



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 129/254 (50%), Gaps = 7/254 (2%)

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           ++ + H P +     +I   +K     DA +LF +MP RNV+SW  MI  YS+   +++A
Sbjct: 39  LYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKA 98

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           + L + MLR+G+ PN  T    + A   ++ + M    H   +K   + DV+V ++LI  
Sbjct: 99  LELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRM---LHCGIIKEGLESDVYVRSALIDV 155

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           +AK G  ED+L VFD++   + + WN++I G+AQN R + A+E F+RM+  G      TL
Sbjct: 156 FAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATL 215

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
             +L AC    L+E G          D  ++       +VD+  + G  ++A+     + 
Sbjct: 216 TSVLRACTGLALLELGMQAHVHIVKYDQDLILNN---ALVDMYCKCGSLEDARRVFNQMK 272

Query: 405 FDPGIGFWKALLGG 418
            +  +  W  ++ G
Sbjct: 273 -ERDVITWSTMISG 285


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 173/514 (33%), Positives = 296/514 (57%), Gaps = 12/514 (2%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL +C +  + N+  ++H+    +LI   +A++ K     + T+ V   SE  + +   +
Sbjct: 485 LLTLCANQRNDNQGRQIHA----HLI---RANITK--NIIVETELVHMYSECGRLNYAKE 535

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+ + + N  S  ++I  + +    +EA+ LF +M L  I+P  F+  S++ S  +L D
Sbjct: 536 IFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSD 595

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G++LH +  +  ++    +   ++D+Y K  S++ A +V++ T   +V+    M+  
Sbjct: 596 SQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSA 655

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +   R  DA  LF +M  RN   WN+++ GY+  G  +E+ N F+EML   +  +  T+
Sbjct: 656 FVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTM 715

Query: 244 PCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
              +   +++ AL  G   H+  +K  F+    V +  +L+  Y+KCG++  +  VFD +
Sbjct: 716 VTIVNLCSSLPALEHGDQLHSLIIKKGFV-NCSVVLETALVDMYSKCGAITKARTVFDNM 774

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             +NIV+WNA+I GY+++G  +EA+  +E M   G+ PN VT L +L AC+HTGLVE+G 
Sbjct: 775 NGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGL 834

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F+  + +     K EHY CMVDLL R+GR ++AKEF+  +P +P +  W ALLG C++
Sbjct: 835 RIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRV 894

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H ++++G  AA+R+  LDP++   YV++SN  + AG+W  V +IR+ MK KG+ + PG S
Sbjct: 895 HKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVS 954

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
           WIEI S++ +F  G + H   +EIY  LR  T Q
Sbjct: 955 WIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQ 988



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 212/423 (50%), Gaps = 46/423 (10%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
            DE+   +VV+   +I  + K   +EEA  +F RML + + P  FTF S +    AL   
Sbjct: 233 LDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSR 292

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           + GKQ+H+     G + + FVG+A++D+Y K                             
Sbjct: 293 DGGKQVHSKLIACGFKGDTFVGNALIDMYAKC---------------------------- 324

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
              +  E  LK+F EM  RN V+WN++I   +Q G   +A+ LF+ M   G   N   L 
Sbjct: 325 ---DDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLG 381

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             ++A+A +A +G G+  H   V+ L   D+ +G++L+  Y+KCG +E++  VF  L ER
Sbjct: 382 SILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLER 441

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKG--- 360
           N V++NA++ GY Q G+ EEA+E +  M+  +GI+P+  T   LL  C +     +G   
Sbjct: 442 NEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQI 501

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           +++  +A +    +++ E    +V + S  GR   AKE +++   +     W +++ G Q
Sbjct: 502 HAHLIRANITKNIIVETE----LVHMYSECGRLNYAKE-IFNRMAERNAYSWNSMIEGYQ 556

Query: 421 IHSNVE--LGEFAARRILALDPEDVSSYVMLSN--ALSVAGKWDNVSN--IRREMKEKGM 474
            +   +  L  F   ++  + P+  S   MLS+  +LS + K   + N  +R  M+E+G+
Sbjct: 557 QNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI 616

Query: 475 TRV 477
            +V
Sbjct: 617 LQV 619



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 182/371 (49%), Gaps = 52/371 (14%)

Query: 44  IRTDSVSCGSESDKF---------------SSVHQVFDEVPDLNVVSATTIIGRFAKQHH 88
           + +  ++CG + D F                S  +VFDE+ + N V+  +II   A+  H
Sbjct: 298 VHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGH 357

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148
           + +A+ LF RM     + + F  GS++ +S  L D+  G++LH    +  L S++ +GSA
Sbjct: 358 FNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSA 417

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           ++D+Y K   +EEA +VF      N VSY  ++ G ++  + E+AL+L+ +M        
Sbjct: 418 LVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQS------ 471

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
                                    +G+ P+  T    +   AN      G+  HA  ++
Sbjct: 472 ------------------------EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR 507

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
                ++ V   L+  Y++CG +  +  +F+++ ERN  +WN++I GY QNG  +EA+  
Sbjct: 508 ANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRL 567

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVD 385
           F++M++NGI+P+  +L  +L +C      +KG   +++  +  +E+ G+L+      +VD
Sbjct: 568 FKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ----VVLVD 623

Query: 386 LLSRSGRFKEA 396
           + ++ G    A
Sbjct: 624 MYAKCGSMDYA 634



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 174/366 (47%), Gaps = 39/366 (10%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D      ++F+E+P+ N+ +  T+I  +A+   Y E + L+ RM        +FTF SVI
Sbjct: 123 DDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVI 182

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            +  A+ED+   +QL +   K GL  N+FVG A++D Y +   ++               
Sbjct: 183 KACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMD--------------- 227

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                           DA+    E+   +VV+WNA+I GY +    EEA  +F  ML+ G
Sbjct: 228 ----------------DAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIG 271

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P++ T   A+     + +   GK  H+  +    K D FVGN+LI  YAKC   E  L
Sbjct: 272 VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCL 331

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VFD++ ERN VTWN++I   AQ G   +A+  F RM+ +G + N   L  +L A     
Sbjct: 332 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLA 391

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            + KG   + +  +  L    +L     + +VD+ S+ G  +EA +    L     + + 
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILG----SALVDMYSKCGMVEEAHQVFRSLLERNEVSY- 446

Query: 413 KALLGG 418
            ALL G
Sbjct: 447 NALLAG 452


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 170/460 (36%), Positives = 280/460 (60%), Gaps = 5/460 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E+       ++FDE+P+ N +S + +I R+++  + EEA+ LFS+M+    +P+   F  
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + +  +L  L+ G  +H   TK+G+  +VF+GS+++DLY K    ++   VF+     N
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VV + +M+ G     R E+  +LF+ +P +N VSW  +I GY +  + E+ + +F  +L 
Sbjct: 382 VVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLV 441

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G  PN ST    + A A+IA+L  G + H   +K   + D+FVG +L   YAKCG +  
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACN 352
           S  VF+++ E+N ++W  +I G A++G   E++  FE M R + + PN + LL +L+AC+
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACS 561

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLV+KG  YF+   +E    +KP  +HY C+VDLLSRSGR  EA+EF+  +PF P   
Sbjct: 562 HCGLVDKGLWYFNS--MEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEAN 619

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL GC+ + + ++ E  A+++  L   + + YV+LSN  + AG+W +VSNIR+ M+
Sbjct: 620 AWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMR 679

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           EKG+ +  GCSW+E++++VH F + D +H  ++EIY  L+
Sbjct: 680 EKGLKKSGGCSWVEVRNQVHSFYSEDGSHSQSNEIYGTLQ 719



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 191/386 (49%), Gaps = 35/386 (9%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+  P  NVVS T  I  F +     EA+ LF R+L   +RP++ TF SV+ +   L D 
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            LG  +     K G +  + V ++++ L +++  I+ A RVF+     +VVS+T ++   
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAY 260

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           ++     +A ++F EMP RN +SW+AMI  YSQ+G  EEA+ LF +M++EG  PN S   
Sbjct: 261 VETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFA 320

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
           C + A A++ AL  G + H    K     DVF+G+SLI  Y KCG  +D  LVFD + E+
Sbjct: 321 CTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK 380

Query: 305 NIVTWNAVICGYAQNGRG-------------------------------EEAIEFFERMR 333
           N+V WN+++ GY+ NGR                                E+ +E F  + 
Sbjct: 381 NVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLL 440

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGR 392
           ++G  PN  T   +L AC     ++KG +     K+   G+         + D+ ++ G 
Sbjct: 441 VSGQTPNKSTFSSVLCACASIASLDKGMNV--HGKIIKLGIQYDIFVGTALTDMYAKCGD 498

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGG 418
              +K+    +P    I  W  ++ G
Sbjct: 499 IGSSKQVFERMPEKNEIS-WTVMIQG 523



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 35/314 (11%)

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           S++ V + ++  Y++  ++ +A  +F++    N VS++ +I GL+K  R E+++  F+  
Sbjct: 85  SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
           P +NVVSW A I G+ + G N EA+ LF  +L  G+ PN  T    + A   +   G+G 
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 261 SFHACAVKF-------------------------------LGKLDVFVGNSLISFYAKCG 289
           S     VK                                + K DV    +++  Y + G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            + ++  +FD++ ERN ++W+A+I  Y+Q+G  EEA++ F +M   G +PN       L 
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           A      +  G +      +   G+ K     + ++DL  + G+  + +  ++DL  +  
Sbjct: 325 ALASLRALSAGINI--HGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGR-LVFDLILEKN 381

Query: 409 IGFWKALLGGCQIH 422
           +  W +++GG  I+
Sbjct: 382 VVCWNSMVGGYSIN 395


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 262/455 (57%), Gaps = 31/455 (6%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +   + + +VVS T +I  + +   + EA+ LF  M    IR     F S I +   ++ 
Sbjct: 472 ILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQA 531

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN G+Q+HA +   G   ++ +G+A++ LY +                          CG
Sbjct: 532 LNQGQQIHAQSYISGYSEDLSIGNALVSLYAR--------------------------CG 565

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                R +DA   F+++  ++ +SWNA+I G++Q+G  EEA+ +F +M + G+  N  T 
Sbjct: 566 -----RAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTF 620

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
             A+ A AN A +  GK  HA  +K     +    N LI+ Y+KCGS+ED+   F ++ E
Sbjct: 621 GSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPE 680

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +N+V+WNA+I GY+Q+G G EA+  FE M+  G+ PN VT +G+L AC+H GLV +G SY
Sbjct: 681 KNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSY 740

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F     E   + KPEHY C+VDLL R+     A+EF+ ++P +P    W+ LL  C +H 
Sbjct: 741 FRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHK 800

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N+E+GEFAAR +L L+PED ++YV+LSN  +V+GKWD     R+ MK++G+ + PG SWI
Sbjct: 801 NIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWI 860

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           E+K+ +H F  GDR H + ++IY  +    E+  E
Sbjct: 861 EVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGE 895



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 170/363 (46%), Gaps = 41/363 (11%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +  Q+F ++   + +S  ++I   A++   + A+ LF +M L  ++P   T  S++ +  
Sbjct: 266 AAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACA 325

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           ++     GKQLH++  K+G+ S++ +  ++LDLY+K   IE A   F  T          
Sbjct: 326 SVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTET-------- 377

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                                   NVV WN M+  Y Q G   E+  +F++M  EGL+PN
Sbjct: 378 -----------------------ENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPN 414

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T P  +    ++ AL +G+  H   +K   + +V+V + LI  YAK G ++ +  +  
Sbjct: 415 QYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQ 474

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           +L E ++V+W A+I GY Q+    EA++ F+ M   GIR + +     + AC     + +
Sbjct: 475 RLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQ 534

Query: 360 GYSYFSQAKL----EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           G    +Q+ +    ED  +        +V L +R GR ++A      +     I  W AL
Sbjct: 535 GQQIHAQSYISGYSEDLSIGNA-----LVSLYARCGRAQDAYLAFEKIDAKDNIS-WNAL 588

Query: 416 LGG 418
           + G
Sbjct: 589 ISG 591



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 148/299 (49%), Gaps = 32/299 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STAL 121
           ++FD++P  NV     +I     +    + + LFS M+  N+ P E TF SV+ + S   
Sbjct: 66  KLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGK 125

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
               + +Q+HA     G  S+  V + ++DLY K   ++ A  VFE              
Sbjct: 126 APFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFE-------------- 171

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                        +LF     ++ VSW AMI G SQ GR +EA+ LF +M +  ++P   
Sbjct: 172 -------------RLFL----KDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPY 214

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A   I    +G+  H   VK+    + FV N+L++ Y++ G++  +  +F K+
Sbjct: 215 VFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM 274

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
             R+ +++N++I G AQ G  + A++ FE+M+++ ++P+ VT+  LL AC   G   KG
Sbjct: 275 HRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKG 333



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 162/361 (44%), Gaps = 37/361 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ +   + VS   +I   ++    +EAI LF +M    + P+ + F SV+ + T +E 
Sbjct: 169 VFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIEL 228

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             LG+QLH +  K GL S  FV +A++ LY +  ++  A ++F   H  + +SY ++I G
Sbjct: 229 FKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISG 288

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           L +R                               G ++ A+ LF +M  + + P+  T+
Sbjct: 289 LAQR-------------------------------GFSDRALQLFEKMQLDCMKPDCVTV 317

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A++ A   GK  H+  +K     D+ +  SL+  Y KC  +E +   F     
Sbjct: 318 ASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTET 377

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            N+V WN ++  Y Q G   E+   F +M+I G+ PN  T   +L  C   G ++ G   
Sbjct: 378 ENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQI 437

Query: 364 FSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            +Q         +   Y C  ++D+ ++ G    A+  L  L  +  +  W A++ G   
Sbjct: 438 HTQVI---KSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQ 493

Query: 422 H 422
           H
Sbjct: 494 H 494



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 105/238 (44%), Gaps = 51/238 (21%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D + +    F+++   + +S   +I  FA+  H EEA+ +FS+M    +  + FT
Sbjct: 564 CGRAQDAYLA----FEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFT 619

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           FGS + ++    ++  GKQ+HA   K G  S     + ++ LY K  SIE+A R F +  
Sbjct: 620 FGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP 679

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             NVVS+  MI G                               YSQ G   EAV+LF E
Sbjct: 680 EKNVVSWNAMITG-------------------------------YSQHGYGSEAVSLFEE 708

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSF----------------HACAVKFLGK 272
           M + GL+PNH T    + A +++  +  G S+                + C V  LG+
Sbjct: 709 MKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGR 766



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 151/366 (41%), Gaps = 42/366 (11%)

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
           R +  N++   + F     S + L+     K+LHA   K G      +GS ++D+Y    
Sbjct: 4   RGIRANVQTYLWLFEGCFNSGSLLD----AKKLHARIFKSGFDGEDVLGSRLIDIY---- 55

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
                                      L     ++A+KLF ++P  NV  WN +I G   
Sbjct: 56  ---------------------------LAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLA 88

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AANIAALGMGKSFHACAVKFLGKLDVF 276
                + + LF  M+ E + P+ ST    + A +   A   + +  HA  +         
Sbjct: 89  KKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPL 148

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           V N LI  Y+K G ++ + LVF++L  ++ V+W A+I G +QNGR +EAI  F +M  + 
Sbjct: 149 VCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSA 208

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFK 394
           + P       +L AC    L + G        +   G L  E + C  +V L SR G   
Sbjct: 209 VIPTPYVFSSVLSACTKIELFKLGEQL--HGFIVKWG-LSSETFVCNALVTLYSRWGNLI 265

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQI-HSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
            A++    +     I +   + G  Q   S+  L  F   ++  + P+ V+   +LS   
Sbjct: 266 AAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACA 325

Query: 454 SVAGKW 459
           SV   +
Sbjct: 326 SVGAGY 331


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 279/460 (60%), Gaps = 5/460 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E+       ++FDE+P+ N +S + +I R+++  + EEA+ LFS+M+    +P+   F  
Sbjct: 262 ETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC 321

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + +  +L  L+ G  +H   TK+G+  +VF+GS+++DLY K    ++   VF+     N
Sbjct: 322 TLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKN 381

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VV + +M+ G     R E+  +LF+ +P +N  SW  +J GY +  + E+ + +F  +L 
Sbjct: 382 VVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLV 441

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G  PN ST    + A A+IA+L  G + H   +K   + D+FVG +L   YAKCG +  
Sbjct: 442 SGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGS 501

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACN 352
           S  VF+++ E+N ++W  +I G A++G   E++  FE M R + + PN + LL +L+AC+
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACS 561

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLV+KG  YF+   +E    +KP  +HY C+VDLLSRSGR  EA+EF+  +PF P   
Sbjct: 562 HCGLVDKGLWYFNS--MEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEAN 619

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL GC+ + + ++ E  A+++  L   + + YV+LSN  + AG+W +VSNIR+ M+
Sbjct: 620 AWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMR 679

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           EKG+ +  GCSW+E++++VH F + D +H  +DEIY  L+
Sbjct: 680 EKGLKKSGGCSWVEVRNQVHSFYSEDGSHSQSDEIYGTLQ 719



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 191/386 (49%), Gaps = 35/386 (9%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+  P  NVVS T  I  F +     EA+ LF R+L   +RP++ TF SV+ +   L D 
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDF 200

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            LG  +     K G +  + V ++++ L +++  I+ A RVF+     +VVS+T ++   
Sbjct: 201 GLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAY 260

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           ++     +A ++F EMP RN +SW+AMI  YSQ+G  EEA+ LF +M++EG  PN S   
Sbjct: 261 VETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFA 320

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
           C + A A++ AL  G + H    K     DVF+G+SLI  Y KCG  +D  LVFD + E+
Sbjct: 321 CTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEK 380

Query: 305 NIVTWNAVICGYAQNGRG-------------------------------EEAIEFFERMR 333
           N+V WN+++ GY+ NGR                                E+ +E F  + 
Sbjct: 381 NVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLL 440

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGR 392
           ++G  PN  T   +L AC     ++KG +     K+   G+         + D+ ++ G 
Sbjct: 441 VSGQTPNKSTFSSVLCACASIASLDKGMNV--HGKIIKLGIQYDIFVGTALTDMYAKCGD 498

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGG 418
              +K+    +P    I  W  ++ G
Sbjct: 499 IGSSKQVFERMPEKNEIS-WTVMIQG 523



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 35/314 (11%)

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           S++ V + ++  Y++  ++ +A  +F++    N VS++ +I GL+K  R E+++  F+  
Sbjct: 85  SDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFERN 144

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
           P +NVVSW A I G+ + G N EA+ LF  +L  G+ PN  T    + A   +   G+G 
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 261 SFHACAVKF-------------------------------LGKLDVFVGNSLISFYAKCG 289
           S     VK                                + K DV    +++  Y + G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            + ++  +FD++ ERN ++W+A+I  Y+Q+G  EEA++ F +M   G +PN       L 
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           A      +  G +      +   G+ K     + ++DL  + G+  + +  ++DL  +  
Sbjct: 325 ALASLRALSAGINI--HGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGR-LVFDLILEKN 381

Query: 409 IGFWKALLGGCQIH 422
           +  W +++GG  I+
Sbjct: 382 VVCWNSMVGGYSIN 395


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 268/455 (58%), Gaps = 45/455 (9%)

Query: 57  KFSSVHQ---VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           KF  +H    VFD++PD NVVS TT+I  ++     ++A+     ML   +RP+ FT+ S
Sbjct: 12  KFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSS 71

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ +   L +L   +QLH    K+GL S+VFV SA++D+Y +   +E A RV        
Sbjct: 72  VLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV-------- 120

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                                  F EM   ++V W+++I G++Q    +EA+ LF  M R
Sbjct: 121 -----------------------FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKR 157

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G +   +TL   + A   +A L +G+  H   +K+    D+ + N+L+  Y KCGS+ED
Sbjct: 158 AGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCGSLED 215

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VF ++ E+++++W+ +I G AQNG  +EA++ FE M++ GI+PN VT++G+L+AC+H
Sbjct: 216 ANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSH 275

Query: 354 TGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            GLVE+G  YF   K     DPG    EHY CM+DLL R+GR  EA + + ++  +P   
Sbjct: 276 AGLVEEGLYYFHSMKELFGIDPG---REHYGCMIDLLGRAGRLSEAVDLINEMECEPDAV 332

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W+ALL  C++H NV++   AA++IL LDP+D  +YV+LSN  +   +W++V+ +RR M 
Sbjct: 333 TWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMT 392

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
            +G+ + PGCSWIE+  ++H F+ GDR+H    EI
Sbjct: 393 NRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREI 427



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 9/210 (4%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +R+  +   S   +  +  +VFDE+   ++V  ++II  FA+    +EA+ LF RM    
Sbjct: 100 VRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAG 159

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
               + T  SV+ + T L  L LG+Q+H    K     ++ + +A+LD+Y K  S+E+A 
Sbjct: 160 FLAQQTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDAN 217

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTG 219
            VF      +V+S++TMI GL +    ++ALKLF+ M       N V+   ++   S  G
Sbjct: 218 AVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAG 277

Query: 220 RNEEAVNLFIEMLRE--GLVPNHSTLPCAI 247
             EE +  F  M +E  G+ P      C I
Sbjct: 278 LVEEGLYYFHSM-KELFGIDPGREHYGCMI 306



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 5/143 (3%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           F+ N LI+ Y K G + D+  VFDK+ +RN+V+W  +I  Y+     ++A+EF   M   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
           G+RPN  T   +L AC+    + + +    +  L+    ++    + ++D+ SR G  + 
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVR----SALIDVYSRWGELEN 116

Query: 396 AKEFLYDLPFDPGIGFWKALLGG 418
           A   ++D      +  W +++ G
Sbjct: 117 ALR-VFDEMVTGDLVVWSSIIAG 138


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 264/458 (57%), Gaps = 4/458 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ +P  +V+S T++   +       EA+  F +M L   RP+  T  S++P+ T L+D
Sbjct: 135 VFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKD 194

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G+++H +  + G+  NVFV SA++++Y    SI +A  VF+     + VS+  +I  
Sbjct: 195 LKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITA 254

Query: 184 LLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
               +  E  L +F  M       N  SWNA+IGG  Q GR E+A+ +   M   G  PN
Sbjct: 255 YFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPN 314

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T+   + A  N+ +L  GK  H    +     D+    +L+  YAKCG +E S  VF 
Sbjct: 315 QITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFS 374

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            +T+R+ V+WN +I   + +G GEEA+  F  M  +G+RPN VT  G+L  C+H+ LV++
Sbjct: 375 MMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDE 434

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G   F     +       +H++CMVD+LSR+GR +EA EF+  +P +P  G W ALLGGC
Sbjct: 435 GLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGC 494

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +++ NVELG  AA R+  ++ ++  +YV+LSN L  A  W   S  R+ M+++G+T+ PG
Sbjct: 495 RVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPG 554

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           CSWI+++++VH FV GD+++  +DEIY  L    E++R
Sbjct: 555 CSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMR 592



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 146/342 (42%), Gaps = 77/342 (22%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTF 111
           S S        +FD++P  ++ + T +I    K     EAI  ++     N + P +   
Sbjct: 22  SNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLL 81

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            SV  +  +L D+   K++H  A + G  S+V +G+A++D+Y K    E A  VFE    
Sbjct: 82  LSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPF 141

Query: 172 PNVVSYTTMI-----CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
            +V+S+T+M      CGLL+                                    EA+ 
Sbjct: 142 RDVISWTSMASCYVNCGLLR------------------------------------EALG 165

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
            F +M   G  PN  T+   + A  ++  L  G+  H   V+     +VFV ++L++ YA
Sbjct: 166 AFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYA 225

Query: 287 KCGSMEDSLLVFDKLTERNIV-----------------------------------TWNA 311
            C S+  + LVFD ++ R+ V                                   +WNA
Sbjct: 226 SCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNA 285

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           VI G  QNGR E+A+E   RM+ +G +PN +T+  +L AC +
Sbjct: 286 VIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTN 327



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 9/188 (4%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++  E   LN  S   +IG   +    E+A+ + SRM     +P++ T  SV+P+ T LE
Sbjct: 270 RMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLE 329

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GKQ+H +  +     ++   +A++ +Y K   +E + RVF      + VS+ TMI 
Sbjct: 330 SLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMII 389

Query: 183 GLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                   E+AL LF+EM       N V++  ++ G S +   +E + +F  M R+    
Sbjct: 390 ATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRD---- 445

Query: 239 NHSTLPCA 246
            HS  P A
Sbjct: 446 -HSVEPDA 452


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 177/505 (35%), Positives = 289/505 (57%), Gaps = 14/505 (2%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQ-KLETPAIRTDSVSCGS-ESDKFSSVHQVF 65
           C++S+S N +  L +   N  IE  +   + K +   I  + +  G  + ++      +F
Sbjct: 170 CKNSISWNGM--LAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIF 227

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           D +P+ + VS  T+I  +A+     EA  LF    + ++    FT+ +++        L+
Sbjct: 228 DRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLD 283

Query: 126 LGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
             +++       G+ + N    +AI+  Y++   +++A  +FE     NV S+ TMI G 
Sbjct: 284 EARRVFD-----GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGY 338

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
            +      A   F  MP R+ +SW A+I GY+Q+G  EEA++LF+EM R+G   N ST  
Sbjct: 339 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 398

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             +   A IAAL +GK  H   VK   +   +VGN+L+  Y KCG+++D+ +VF+ + E+
Sbjct: 399 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK 458

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
            +V+WN +I GYA++G G+EA+  FE M+  GI P+ VT++G+L AC+HTGLV+KG  YF
Sbjct: 459 EVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYF 518

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
                +       +HY CM+DLL R+GR  +A+  + ++PF+P    W ALLG  +IH N
Sbjct: 519 YSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGN 578

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
            ELGE AA+ I  ++P++   YV+LSN  + +G+W +V  +R  M+++G+ +VPG SW+E
Sbjct: 579 TELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 638

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVL 509
           +++K+H F  GD  H   D IY  L
Sbjct: 639 VQNKIHTFTVGDSVHPERDRIYTFL 663



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 162/387 (41%), Gaps = 62/387 (16%)

Query: 26  NYLIETQKASVQKLETPAIRTDSVSCGS------ESDKFSSVHQVFDEVPDLNVVSATTI 79
           N++   Q  S  +L     R  S+S  +       +DKF    Q+F+++P  ++VS   +
Sbjct: 58  NHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVM 117

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           I    +  +   A  LF +M                P                       
Sbjct: 118 ISGCVRYRNLRAARLLFDQM----------------P----------------------- 138

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           + +V   +A+L  Y +   ++EA  +F++    N +S+  M+   ++  R EDA +LF+ 
Sbjct: 139 ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES 198

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
                ++SWN M+GGY +  R  +A  +F  M     V  ++ +      A N   L   
Sbjct: 199 KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISG---YAQNGELLEAQ 255

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           + F    V+     DVF   +++S Y + G ++++  VFD + E+N V+WNA+I GY Q 
Sbjct: 256 RLFEESPVR-----DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQC 310

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
            R ++A E FE M    +      + G        G + +  ++F +    D        
Sbjct: 311 KRMDQARELFEAMPCQNVSSWNTMITGYA----QNGDIAQARNFFDRMPQRD-----SIS 361

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFD 406
           +A ++   ++SG  +EA     ++  D
Sbjct: 362 WAAIIAGYAQSGYGEEALHLFVEMKRD 388



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 138/321 (42%), Gaps = 39/321 (12%)

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           A ++FE     ++VS+  MI G ++      A  LF +MP R+VVSWNAM+ GY+Q G  
Sbjct: 99  ARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 222 EEAVNLFIEMLREGLVPNHSTLPC--AIIAAANIAALGMGKSFHACAVKFLGKLD--VFV 277
           +EA  +F EM            PC  +I     +AA             F  K D  +  
Sbjct: 159 KEAKEIFDEM------------PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELIS 206

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N ++  Y K   + D+  +FD++ ER+ V+WN +I GYAQNG   EA   FE   +  +
Sbjct: 207 WNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV 266

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH----YACMVDLLSRSGRF 393
                      W    +G V+ G     +A+    GM  PE     +  ++    +  R 
Sbjct: 267 ---------FTWTAMVSGYVQNG--MLDEARRVFDGM--PEKNSVSWNAIIAGYVQCKRM 313

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNA 452
            +A+E    +P    +  W  ++ G   + ++      AR      P+ D  S+  +   
Sbjct: 314 DQARELFEAMPCQ-NVSSWNTMITGYAQNGDIA----QARNFFDRMPQRDSISWAAIIAG 368

Query: 453 LSVAGKWDNVSNIRREMKEKG 473
            + +G  +   ++  EMK  G
Sbjct: 369 YAQSGYGEEALHLFVEMKRDG 389



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 139/354 (39%), Gaps = 61/354 (17%)

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           A+   N  +QLH+ +    LQ+             K S+  +         + ++V +  
Sbjct: 2   AMRGSNRFRQLHSRSCLRSLQTTTTANR-------KPSTRNQPKTTSSLATDADIVKWNI 54

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
            I   ++  + + AL+LF  MP R+ +SWNAMI G     +   A  LF +M    LV  
Sbjct: 55  AITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVS- 113

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                                                  N +IS   +  ++  + L+FD
Sbjct: 114 --------------------------------------WNVMISGCVRYRNLRAARLLFD 135

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ ER++V+WNA++ GYAQNG  +EA E F+ M       N ++  G+L A    G +E 
Sbjct: 136 QMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIED 191

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
               F     E     +   + CM+    +  R  +A+     +P    +  W  ++ G 
Sbjct: 192 ARRLF-----ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS-WNTMISG- 244

Query: 420 QIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
               N EL E  A+R+    P  DV ++  + +     G  D    +   M EK
Sbjct: 245 -YAQNGELLE--AQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK 295


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 176/472 (37%), Positives = 269/472 (56%), Gaps = 4/472 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VSCG          ++FD+    ++VS  ++I  + ++    EA+  +  M +  I+P E
Sbjct: 153 VSCGD----LDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 208

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T   V+ S   LEDL+LG++ H +  + GL+  V + +A++D+Y+K  ++E A ++F+ 
Sbjct: 209 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDS 268

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
             N  +VS+TTM+ G  +    + A KLF EMP ++VV WNAMIGGY    R +EA+ LF
Sbjct: 269 MTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 328

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM    + P+  T+   + A + + AL +G   H    K    L+V +G +LI  YAKC
Sbjct: 329 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 388

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +  ++ VF +L  RN +TW A+I G A +G    AI +F  M  N + P+ VT LGLL
Sbjct: 389 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 448

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC H GLVE+G  YFSQ   +     K +HY+CMVDLL R+G  +EA+E +  +P +  
Sbjct: 449 SACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEAD 508

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W AL   C+IH NV +GE AA ++L +DP D   YV+L+N    A  W      R+ 
Sbjct: 509 AVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKL 568

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           M+++G+ + PGCS IE+   V+ F+  D++H  +++IY  L   T Q+   E
Sbjct: 569 MRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVE 620



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 188/417 (45%), Gaps = 75/417 (17%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQL 130
           N  S    I  F    +  EA+ L+ R+L  +  +P  +T+  +  +   L  + +G ++
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
                 +G  S++FV +A++ L +    ++ A ++F+ +   ++VS+ +MI G ++R   
Sbjct: 130 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRR--- 186

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
                                       G   EA+N + EM  EG+ P+  T+   + + 
Sbjct: 187 ----------------------------GWAYEALNFYREMKVEGIKPDEVTMIGVVSSC 218

Query: 251 ANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
           A +  L +G+  H C ++  G KL V + N+L+  Y KCG++E +  +FD +T + +V+W
Sbjct: 219 AQLEDLDLGRESH-CYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSW 277

Query: 310 NAVICGYAQNG-------------------------------RGEEAIEFFERMRINGIR 338
             ++ GYAQ+G                               RG+EA+  F  M+   I 
Sbjct: 278 TTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNIN 337

Query: 339 PNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
           P+ VT++  L AC+  G ++ G   + Y  + +L     L       ++D+ ++ G+  +
Sbjct: 338 PDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELS----LNVALGTALIDMYAKCGKITK 393

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
           A +   +LP    +  W A++ G  +H N    +  F+     ++ P++V+   +LS
Sbjct: 394 AIQVFQELPGRNSLT-WTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLS 449



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 39/292 (13%)

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           N  SWN  I G+  +    EAV L+  +L+ +G  P++ T P    A A ++ + MG   
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
               +      D+FV N++I     CG ++ +  +FDK   R++V+WN++I GY + G  
Sbjct: 130 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 189

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYA 381
            EA+ F+  M++ GI+P+ VT++G++ +C     ++ G    S   +E+ G+ L      
Sbjct: 190 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRE--SHCYIEENGLKLTVPLAN 247

Query: 382 CMVDLLSRSGRFKEAKEF------------------------------LYDLPFDPGIGF 411
            ++D+  + G  + A++                               L+D   D  +  
Sbjct: 248 ALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVP 307

Query: 412 WKALLGGCQIHSNV---ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           W A++GG  +H+N     L  F   + + ++P++V+    LS A S  G  D
Sbjct: 308 WNAMIGG-YVHANRGKEALALFNEMQAMNINPDEVTMVSCLS-ACSQLGALD 357



 Score = 38.9 bits (89), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 26  NYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           ++ IE  + S+      A+      CG    K +   QVF E+P  N ++ T II   A 
Sbjct: 363 HHYIEKHELSLNVALGTALIDMYAKCG----KITKAIQVFQELPGRNSLTWTAIISGLAL 418

Query: 86  QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA-WATKVGLQSNVF 144
             +   AI  FS M+  ++ P E TF  ++ +      +  G++  +  ++K  L   + 
Sbjct: 419 HGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLK 478

Query: 145 VGSAILDLYIKLSSIEEATRVFE 167
             S ++DL  +   +EEA  + +
Sbjct: 479 HYSCMVDLLGRAGLLEEAEELIK 501


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 169/438 (38%), Positives = 270/438 (61%), Gaps = 22/438 (5%)

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
           +++RP   +  +V+P+  ++     GK +H  A + G   ++FVG+A++D+Y K   ++E
Sbjct: 7   IDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDE 66

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN----VVSWNAMIGGYSQ 217
           A++VF+     +VVS+  M+ G  +  RFEDAL LF++M   N    VVSW+A+I  ++Q
Sbjct: 67  ASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ 126

Query: 218 TGRNEEAVNLFIEML----------------REGLV-PNHSTLPCAIIAAANIAALGMGK 260
            G   E +++F EM                 ++GLV PN  T+ CA+IA A +AAL +G+
Sbjct: 127 RGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGR 186

Query: 261 SFHACAVK-FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
             HA  ++       ++V N LI  YAK G ++ +  VFD L ++N V+W +++ GY  +
Sbjct: 187 QIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMH 246

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
           GRG+EA+E F+ MR  G++P+GVTLL +L+AC+H+G++++G  +F+    E   +   EH
Sbjct: 247 GRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEH 306

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
           YACMVDLL R+GR  EA E +  +  +P    W ALL GC+IH+NVELGE AA+++L L+
Sbjct: 307 YACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELN 366

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
            E+  SY +LSN  + A +W +V+ +R  MK  G+ + PGCSW++ K     F   D+ H
Sbjct: 367 SENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTH 426

Query: 500 HMNDEIYAVLRSCTEQIR 517
             + +IY +LRS T++I+
Sbjct: 427 PQSKQIYEILRSLTQRIK 444



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 23/219 (10%)

Query: 52  GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQ-------------HHYE--EAIYLF 96
           G   D      ++ +E  +LNVVS + +I  FA++              H E  +A+ LF
Sbjct: 93  GRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELF 152

Query: 97  SRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN-VFVGSAILDLY 153
           S M   +  ++P+ FT    + +   L  L LG+Q+HA+  +    S  ++V + ++D+Y
Sbjct: 153 SWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMY 212

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWN 209
            K   I+ A  VF++    N VS+T+++ G     R ++AL++F EM    +    V+  
Sbjct: 213 AKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLL 272

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
            ++   S +G  ++ +  F  M +E G++P      C +
Sbjct: 273 VVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMV 311


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 177/457 (38%), Positives = 266/457 (58%), Gaps = 5/457 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD +P  N +S   +I  +A+    EEA+ L   +    + PS  +  S   + + + 
Sbjct: 373 ELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIG 432

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G+Q+H+ A K G Q N +V +A++ +Y K  ++E   +VF      + VS+ + I 
Sbjct: 433 ALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIA 492

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            L++    EDA  +F  M  R+VVSW  +I  Y+Q  R +EAV  F  ML E   PN   
Sbjct: 493 ALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPI 552

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   +     + +  +G+  H  A+K     ++ V N+L+S Y KCG   DS  VFD + 
Sbjct: 553 LTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGC-ADSHKVFDSME 611

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER+I TWN  I G AQ+G G EAI+ +E M   G+ PN VT +GLL AC+H GLV++G+ 
Sbjct: 612 ERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQ 671

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           +F ++   D G L P  EHYACMVDLL R+G  + A++F+YD+P +P    W ALLG C+
Sbjct: 672 FF-KSMSRDYG-LTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACK 729

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH N E+G  AA ++   +P +  +YVMLSN  S  G W  V+ +R+ MK++G+++ PGC
Sbjct: 730 IHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGC 789

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           SW++I++KVH FVTGD+ H   +EI   L+     +R
Sbjct: 790 SWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLR 826



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 208/445 (46%), Gaps = 59/445 (13%)

Query: 72  NVVSATTIIGRFAKQHH-YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
           +VV  T+I+  + +     + AI  F  M+  N    E+T+ ++I +      L+ G ++
Sbjct: 257 DVVIGTSILNVYTRDASALDIAIKFFDGMVERN----EYTWSTMIAA------LSHGGRI 306

Query: 131 HAWATKVGLQ--SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
            A     G     ++   +A+L    +   I EA  +FE   +P VVS+  MI G ++  
Sbjct: 307 DAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNG 366

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
             ++A +LF  MP RN +SW  MI GY+Q GR+EEA++L   + R G++P+ S+L  + +
Sbjct: 367 MVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFL 426

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM----------------- 291
           A ++I AL  G+  H+ AVK   + + +V N+LIS Y KC +M                 
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486

Query: 292 --------------EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
                         ED+  +FD +  R++V+W  +I  YAQ  RG+EA+EFF+ M     
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE 546

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEA 396
           +PN   L  LL  C   G  + G    + A     GM      A  ++ +  + G     
Sbjct: 547 KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKH--GMDSELIVANALMSMYFKCGCADSH 604

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD-----PEDVSSYVMLSN 451
           K  ++D   +  I  W   + GC  H    LG  A +    ++     P +V ++V L N
Sbjct: 605 K--VFDSMEERDIFTWNTFITGCAQHG---LGREAIKMYEHMESVGVLPNEV-TFVGLLN 658

Query: 452 ALSVAGKWDNVSNIRREM-KEKGMT 475
           A S AG  D      + M ++ G+T
Sbjct: 659 ACSHAGLVDEGWQFFKSMSRDYGLT 683



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 172/364 (47%), Gaps = 21/364 (5%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +     +VFD +P  ++++  ++I  +      E+A  LF  +   N+R +     +++ 
Sbjct: 48  RLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTA-----TILL 102

Query: 117 SSTALEDLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
           S  A     LG+ L A     G+ + N    +A++  Y++   I  A R+F+   + +V 
Sbjct: 103 SGYA----RLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVT 158

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+ +M+ G     +  DA  LF++MP RN+V+W  MI GY +  ++ +  ++F  M  EG
Sbjct: 159 SWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEG 218

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED-S 294
             P+ S     + A   +  LG+ +      +K   + DV +G S+++ Y +  S  D +
Sbjct: 219 ASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIA 278

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           +  FD + ERN  TW+ +I   +  GR + AI  + R  +  I P+   LL  L  C   
Sbjct: 279 IKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC--- 334

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G + +    F Q  + DP ++    +  M+    ++G   EAKE    +PF   I  W  
Sbjct: 335 GRITEARILFEQ--IPDPIVVS---WNAMITGYMQNGMVDEAKELFDRMPFRNTIS-WAG 388

Query: 415 LLGG 418
           ++ G
Sbjct: 389 MIAG 392



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 149/305 (48%), Gaps = 40/305 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F ++P  N+V+ T +I  + +   + +   +F  M      P +  F SV+ + T L+D
Sbjct: 179 LFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQD 238

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIK-LSSIEEATRVFEDTHNPNVVSYTTMIC 182
           L + + L     K G +S+V +G++IL++Y +  S+++ A + F+     N  +++TMI 
Sbjct: 239 LGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIA 298

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            L    R + A+ ++   P +++ S  A++ G ++ GR  EA  LF              
Sbjct: 299 ALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILF------------EQ 346

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +P  I+ +                            N++I+ Y + G ++++  +FD++ 
Sbjct: 347 IPDPIVVS---------------------------WNAMITGYMQNGMVDEAKELFDRMP 379

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            RN ++W  +I GYAQNGR EEA++  + +  NG+ P+  +L     AC+H G +E G  
Sbjct: 380 FRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQ 439

Query: 363 YFSQA 367
             S A
Sbjct: 440 VHSLA 444



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 123/292 (42%), Gaps = 43/292 (14%)

Query: 47  DSVSCGS------ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           D+VS  S      +++       +FD +   +VVS TTII  +A+    +EA+  F  ML
Sbjct: 483 DTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTML 542

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
             + +P+      ++     L    LG+Q+H  A K G+ S + V +A++ +Y K     
Sbjct: 543 HEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFK----- 597

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                CG        D+ K+F  M  R++ +WN  I G +Q G 
Sbjct: 598 ---------------------CGC------ADSHKVFDSMEERDIFTWNTFITGCAQHGL 630

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
             EA+ ++  M   G++PN  T    + A ++   +  G  F     +  G   +    +
Sbjct: 631 GREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYA 690

Query: 281 -LISFYAKCGSMEDS-LLVFDKLTERNIVTWNAVI--CGYAQNGR-GEEAIE 327
            ++    + G ++ +   ++D   E + V W+A++  C   +N   G  A E
Sbjct: 691 CMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAE 742



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 10/206 (4%)

Query: 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
           +L  + EA  VF+   + +++++ +MI         EDA  LF  +   NV +   ++ G
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSG 104

Query: 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
           Y++ GR  +A  +F  M     V  ++ + C +       A    + F A   +     D
Sbjct: 105 YARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMAR---RLFDAMPSR-----D 156

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
           V   NS+++ Y     M D+  +F ++ +RN+VTW  +I GY +  +  +  + F  M  
Sbjct: 157 VTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHH 216

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKG 360
            G  P+      +L A   TGL + G
Sbjct: 217 EGASPDQSNFASVLSAV--TGLQDLG 240



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 39/157 (24%)

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           +++  I  L +  R  +A ++F  MPHR++++WN+MI  Y  +G  E+A  LF       
Sbjct: 35  AHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF------- 87

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
                       I+  N+    +                      L+S YA+ G + D+ 
Sbjct: 88  ----------DAISGGNVRTATI----------------------LLSGYARLGRVLDAR 115

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            VFD + ERN V WNA++  Y QNG    A   F+ M
Sbjct: 116 RVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAM 152



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           LD    ++ I   A+ G + ++  VFD +  R+I+ WN++I  Y  +G  E+A   F+ +
Sbjct: 31  LDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAI 90

Query: 333 RINGIRPNGVTLLG 346
               +R   + L G
Sbjct: 91  SGGNVRTATILLSG 104


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 268/469 (57%), Gaps = 36/469 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS         +VF+++P  + V+ TT+I  +++     +A+  F++ML     P+EFT
Sbjct: 108 CGS----LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             SVI ++ A      G QLH +  K G  SNV VGSA+LDLY +   +++A  VF    
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVF---- 219

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                DAL+       RN VSWNA+I G+++    E+A+ LF  
Sbjct: 220 ---------------------DALE------SRNDVSWNALIAGHARRSGTEKALELFQG 252

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR+G  P+H +      A ++   L  GK  HA  +K   KL  F GN+L+  YAK GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + D+  +FD+L +R++V+WN+++  YAQ+G G+EA+ +FE MR  GIRPN ++ L +L A
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTA 372

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H+GL+++G+ Y+   K +D  + +  HY  +VDLL R+G    A  F+ ++P +P   
Sbjct: 373 CSHSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA 431

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            WKALL  C++H N ELG +AA  +  LDP+D   +V+L N  +  G+W++ + +R++MK
Sbjct: 432 IWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMK 491

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           E G+ + P CSW+EI++ +H+FV  D  H   +EI         +I+E 
Sbjct: 492 ESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 540



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 175/367 (47%), Gaps = 36/367 (9%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + +++   T  + L  G+ +HA   +   + ++ +G+ +L++Y K  S+EEA +V     
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKV----- 117

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                     F++MP R+ V+W  +I GYSQ  R  +A+  F +
Sbjct: 118 --------------------------FEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ 151

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR G  PN  TL   I AAA       G   H   VK     +V VG++L+  Y + G 
Sbjct: 152 MLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGL 211

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M+D+ LVFD L  RN V+WNA+I G+A+    E+A+E F+ M  +G RP+  +   L  A
Sbjct: 212 MDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGA 271

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+ TG +E+G  +     ++    L       ++D+ ++SG   +A++ ++D      + 
Sbjct: 272 CSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK-IFDRLAKRDVV 329

Query: 411 FWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
            W +LL     H      +  F   R + + P ++S   +L+ A S +G  D   +    
Sbjct: 330 SWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLT-ACSHSGLLDEGWHYYEL 388

Query: 469 MKEKGMT 475
           MK+ G+ 
Sbjct: 389 MKKDGIV 395


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 175/437 (40%), Positives = 261/437 (59%), Gaps = 31/437 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVF+E+P  +V+  + +I R+A+    EEAI +F RM    + P++FT  S++ +  +L 
Sbjct: 302 QVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLV 361

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL LG Q+H    KVGL  NVFV +A++D+Y K                          C
Sbjct: 362 DLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAK--------------------------C 395

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     R E++L+LF E P+   VSWN +I GY Q G  E+A+ LF +ML   +     T
Sbjct: 396 G-----RMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVT 450

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A A IAAL  G   H+ +VK +   +  VGN+LI  YAKCG+++D+ LVFD L 
Sbjct: 451 YSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLR 510

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E + V+WNA+I GY+ +G   EA++ FE M     +P+ VT +G+L AC++ GL+++G +
Sbjct: 511 EHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQA 570

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF     E       EHY CMV LL RSG   +A + ++++PF+P +  W+ALL  C IH
Sbjct: 571 YFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIH 630

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
           ++VELG  +A+R+L ++PED +++V+LSN  + A +W NV++IR  MK KG+ + PG SW
Sbjct: 631 NDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSW 690

Query: 483 IEIKSKVHVFVTGDRNH 499
           IE + +VH F  GD +H
Sbjct: 691 IENQGRVHYFSVGDTSH 707



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/433 (29%), Positives = 210/433 (48%), Gaps = 40/433 (9%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T  + C S         QVFD +   ++VS T ++  + +   +EE++ LFSRM ++ 
Sbjct: 182 VGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVG 241

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            +P+ FTF SV+ +   LE  N+GK +H  A K      +FVG  ++DLYIK   ++   
Sbjct: 242 FKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVD--- 298

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                                       DAL++F+EMP  +V+ W+ MI  Y+Q+ ++EE
Sbjct: 299 ----------------------------DALQVFEEMPKDDVIPWSFMIARYAQSEQSEE 330

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A+ +F  M R  ++PN  TL   + A A++  L +G   H   VK    ++VFV N+L+ 
Sbjct: 331 AIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMD 390

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCG ME+SL +F +      V+WN VI GY Q G GE+A+  F+ M    ++   VT
Sbjct: 391 MYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVT 450

Query: 344 LLGLLWACNHTGLVEKGYSY--FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
              +L AC     +E G      S   + D   +       ++D+ ++ G  K+A+  ++
Sbjct: 451 YSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN---ALIDMYAKCGNIKDAR-LVF 506

Query: 402 DLPFDPGIGFWKALLGGCQIHS--NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           D+  +     W A++ G  +H      L  F +       P+ V ++V + +A S AG  
Sbjct: 507 DMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKV-TFVGILSACSNAGLL 565

Query: 460 DNVSNIRREMKEK 472
           D      + M E+
Sbjct: 566 DRGQAYFKSMVEE 578



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 149/296 (50%), Gaps = 31/296 (10%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D      ++FDE+PD N VS  T+I  +++   + EAI LFSR+       + F F +V+
Sbjct: 93  DSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVL 152

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
               + E   LG  +HA   K+G  S+ FVG+A++D Y      E A +VF+     ++V
Sbjct: 153 KLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMV 212

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+T M+   ++ E FE++LKLF  M  R V                             G
Sbjct: 213 SWTGMVACYVENECFEESLKLFSRM--RIV-----------------------------G 241

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
             PN+ T    + A   +    +GK+ H CA K     ++FVG  LI  Y K G ++D+L
Sbjct: 242 FKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDAL 301

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            VF+++ + +++ W+ +I  YAQ+ + EEAIE F RMR   + PN  TL  LL AC
Sbjct: 302 QVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQAC 357



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 141/307 (45%), Gaps = 44/307 (14%)

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           + +GS++ S     D   GK LH    K G   ++F  + +L+ Y+K  S+         
Sbjct: 45  YIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLP-------- 96

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                  DA KLF EMP RN VS+  +I GYSQ  R  EA+ LF
Sbjct: 97  -----------------------DAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLF 133

Query: 229 IEMLREG--LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
             +  EG  L P   +    ++ +A  A LG   S HAC  K     D FVG +LI  Y+
Sbjct: 134 SRLQGEGHELNPFVFSTVLKLLVSAEWAKLGF--SVHACVYKLGFDSDAFVGTALIDCYS 191

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
            CG  E +  VFD +  +++V+W  ++  Y +N   EE+++ F RMRI G +PN  T   
Sbjct: 192 VCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFAS 251

Query: 347 LLWACNHTGLVEKGYSY----FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           +L AC    +   G +     F  + LE+   +  E    ++DL  +SG   +A +   +
Sbjct: 252 VLKACVGLEVFNVGKAVHGCAFKTSYLEEL-FVGVE----LIDLYIKSGDVDDALQVFEE 306

Query: 403 LPFDPGI 409
           +P D  I
Sbjct: 307 MPKDDVI 313


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/583 (32%), Positives = 306/583 (52%), Gaps = 79/583 (13%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C S   L K  +LHS    YL++    S   +   ++    V CG       + H 
Sbjct: 251 LLAACASVGDLQKGKQLHS----YLLKA-GMSFDYITEGSLLDLYVKCGD----IETAHD 301

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+     NVV    ++  + +     ++  +F +M    I P++FT+  ++ + T    
Sbjct: 302 IFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQ 361

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           + LG+Q+H+ + K G +S+++V   ++D+Y K   +++A ++ E     +VVS+T+MI G
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 184 LLKRERFEDALKLFQEMPH-------------------------------RNVVS----- 207
            ++ +  E+AL  F+EM                                 R  VS     
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 208 ---WNAMIGGYSQTGRNEEAVNL-------------------------------FIEMLR 233
              WN ++  Y++ GR+EEA +L                               F++M +
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQ 541

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G   N  T   AI A AN+A +  GK  H  AVK     +  V N+LIS Y KCGS+ED
Sbjct: 542 AGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIED 601

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + ++F +++ RN V+WN +I   +Q+GRG EA++ F++M+  G++PN VT +G+L AC+H
Sbjct: 602 AKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSH 661

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLVE+G SYF            P+HYAC+VD+L R+G+   A+ F+ ++P       W+
Sbjct: 662 VGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWR 721

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LL  C++H N+E+GE AA+ +L L+P D +SYV+LSNA +V GKW N   +R+ MK++G
Sbjct: 722 TLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRG 781

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           + + PG SWIE+K+ VH F  GDR H ++D+IY  L    +++
Sbjct: 782 IRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRL 824



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 165/361 (45%), Gaps = 33/361 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F    +VF ++   + V+  T+I   A+  H E A+ +F  M L  +RP   T  S++ +
Sbjct: 195 FKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAA 254

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             ++ DL  GKQLH++  K G+  +     ++LDLY+K   IE A  +F      N+   
Sbjct: 255 CASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF------NLGDR 308

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T                         NVV WN M+  Y Q     ++  +F +M   G+ 
Sbjct: 309 T-------------------------NVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH 343

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T PC +        + +G+  H+ ++K   + D++V   LI  Y+K G ++ +  +
Sbjct: 344 PNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKI 403

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            + L +R++V+W ++I GY Q+   EEA+  F+ M+  G+ P+ + L     AC     +
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAM 463

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            +G    ++  +          +  +V+L +R GR +EA     ++     I  W  L+ 
Sbjct: 464 RQGLQIHARVYVSGYAA-DISIWNTLVNLYARCGRSEEAFSLFREIEHKDEIT-WNGLIS 521

Query: 418 G 418
           G
Sbjct: 522 G 522



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 178/399 (44%), Gaps = 42/399 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVF E+   + VS   ++  +A+    +EA  L+S+M    + P+ +   SV+ + T  +
Sbjct: 99  QVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGK 158

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               G+ +HA   K    S  FVG+A++ LY+   S + A RVF               C
Sbjct: 159 LFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVF---------------C 203

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            +L  +R                V++N +I G++Q G  E A+ +F EM   GL P+  T
Sbjct: 204 DMLFCDR----------------VTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVT 247

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++  L  GK  H+  +K     D     SL+  Y KCG +E +  +F+   
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGD 307

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             N+V WN ++  Y Q     ++ E F +M+  GI PN  T   +L  C  TG +E G  
Sbjct: 308 RTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQ 367

Query: 363 YFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             S   L      + + Y    ++D+ S+ G   +A++ L  L     +  W +++ G  
Sbjct: 368 IHS---LSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLE-KRDVVSWTSMIAGYV 423

Query: 421 IHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            H   E  L  F   +   + P+++    + S A + AG
Sbjct: 424 QHDFCEEALATFKEMQDCGVWPDNIG---LASAASACAG 459



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 141/291 (48%), Gaps = 39/291 (13%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++HA +   GL ++  +G+ ++DLY K   + +A +VF                      
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVF---------------------- 101

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                    +E+  R+ VSW AM+ GY+Q+G  +EA  L+ +M    ++P    L   + 
Sbjct: 102 ---------KELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLS 152

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A         G+  HA   K     + FVGN+LI+ Y   GS + +  VF  +   + VT
Sbjct: 153 ACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVT 212

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
           +N +I G+AQ G GE A++ F+ M+++G+RP+ VT+  LL AC   G ++KG   +SY  
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLL 272

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +A +    + +      ++DL  + G  + A + +++L     +  W  +L
Sbjct: 273 KAGMSFDYITE----GSLLDLYVKCGDIETAHD-IFNLGDRTNVVLWNLML 318



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 14/228 (6%)

Query: 239 NHSTLPCAIIAAANIAALGMGKSF------HACAV-KFLGKLDVFVGNSLISFYAKCGSM 291
           +H  L  A +  A  A  G G  +      HA +V + LG  D  +GN LI  YAK G +
Sbjct: 36  HHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGA-DRLIGNLLIDLYAKNGLV 94

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             +  VF +L+ R+ V+W A++ GYAQ+G G+EA   + +M    + P    L  +L AC
Sbjct: 95  WQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSAC 154

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
               L  +G    +Q   +       E +    ++ L    G FK A+    D+ F   +
Sbjct: 155 TKGKLFAQGRMIHAQVYKQ---AFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRV 211

Query: 410 GFWKALLGGCQI-HSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
            F   + G  Q  H    L  F   ++  L P+ V+   +L+   SV 
Sbjct: 212 TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVG 259


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/448 (37%), Positives = 266/448 (59%), Gaps = 33/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+F ++ + + +S T +I  F +     EAI LF  M L N+   ++TFGSV+ +   + 
Sbjct: 229 QLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVM 288

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GKQ+HA+  +   Q N+FVGSA++D+Y K  SI+ A  VF                
Sbjct: 289 ALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVF---------------- 332

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                          ++M  +NVVSW AM+ GY Q G +EEAV +F +M   G+ P+  T
Sbjct: 333 ---------------RKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFT 377

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSLLVFDKL 301
           L   I + AN+A+L  G  FH C     G +  + V N+L++ Y KCGS+EDS  +F ++
Sbjct: 378 LGSVISSCANLASLEEGAQFH-CRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEM 436

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           +  + V+W A++ GYAQ G+  E +  FE M  +G +P+ VT +G+L AC+  GLV+KG 
Sbjct: 437 SYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGN 496

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F     E   +   +HY CM+DL SR+GR +EA++F+  +PF P    W +LL  C+ 
Sbjct: 497 QIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRF 556

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N+E+G++AA  +L L+P + +SY++LS+  +  GKW+ V+N+R+ M++KG+ + PGCS
Sbjct: 557 HRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCS 616

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           WI+ K++VH+F   D+++  +D+IY+ L
Sbjct: 617 WIKYKNQVHIFSADDQSNPFSDQIYSEL 644



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 216/403 (53%), Gaps = 12/403 (2%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL---LNIRPSEFTFGSVIPS 117
           + +VF  +P  ++VS  ++I  +A +    +++  ++ ML     N+     +   ++ S
Sbjct: 94  MERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILAS 153

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                 ++LG Q+H    K G QS VFVGS ++D+Y K   +  A + F++    NVV Y
Sbjct: 154 KQGC--VHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMY 211

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            T+I GL++  R ED+ +LF +M  ++ +SW AMI G++Q G + EA++LF EM  E L 
Sbjct: 212 NTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLE 271

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            +  T    + A   + AL  GK  HA  ++   + ++FVG++L+  Y KC S++ +  V
Sbjct: 272 MDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETV 331

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F K+  +N+V+W A++ GY QNG  EEA++ F  M+ NGI P+  TL  ++ +C +   +
Sbjct: 332 FRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASL 391

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           E+G  +  +A +   G++     +  +V L  + G  +++     ++ +   +  W AL+
Sbjct: 392 EEGAQFHCRALVS--GLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVS-WTALV 448

Query: 417 GG-CQI-HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            G  Q   +N  L  F +       P+ V +++ + +A S AG
Sbjct: 449 SGYAQFGKANETLRLFESMLAHGFKPDKV-TFIGVLSACSRAG 490



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 159/365 (43%), Gaps = 40/365 (10%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K++H    K      +F+ + ++  Y K   I  A RVF+     N+ S+ T++    K 
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKL 88

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLPCA 246
               +  ++F  MP R++VSWN++I  Y+  G   ++V  +  ML  G    N   L   
Sbjct: 89  ACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTM 148

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK------------------- 287
           +I A+    + +G   H   VKF  +  VFVG+ L+  Y+K                   
Sbjct: 149 LILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNV 208

Query: 288 ------------CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
                       C  +EDS  +F  + E++ ++W A+I G+ QNG   EAI+ F  MR+ 
Sbjct: 209 VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLE 268

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
            +  +  T   +L AC     +++G   ++Y  +   +D   +     + +VD+  +   
Sbjct: 269 NLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVG----SALVDMYCKCKS 324

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLG-GCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451
            K A+     +     + +   L+G G   +S   +  F   +   ++P+D +   ++S+
Sbjct: 325 IKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISS 384

Query: 452 ALSVA 456
             ++A
Sbjct: 385 CANLA 389



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 140/303 (46%), Gaps = 27/303 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           C  +S K  S   VF ++   NVVS T ++  + +  + EEA+ +F  M    I P +FT
Sbjct: 320 CKCKSIK--SAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFT 377

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
            GSVI S   L  L  G Q H  A   GL S + V +A++ LY K  SIE++ R+F +  
Sbjct: 378 LGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMS 437

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVN 226
             + VS+T ++ G  +  +  + L+LF+ M       + V++  ++   S+ G  ++   
Sbjct: 438 YVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQ 497

Query: 227 LFIEMLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL----DVFVGNSL 281
           +F  M++E  ++P      C I   +    L   +       KF+ K+    D     SL
Sbjct: 498 IFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEAR-------KFINKMPFSPDAIGWASL 550

Query: 282 ISFYAKCGSME------DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           +S      +ME      +SLL   KL   N  ++  +   YA  G+ EE     + MR  
Sbjct: 551 LSSCRFHRNMEIGKWAAESLL---KLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDK 607

Query: 336 GIR 338
           G+R
Sbjct: 608 GLR 610


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 268/469 (57%), Gaps = 36/469 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS         +VF+++P  + V+ TT+I  +++     +A+  F++ML     P+EFT
Sbjct: 108 CGS----LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             SVI ++ A      G QLH +  K G  SNV VGSA+LDLY +   +++A  VF    
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVF---- 219

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                DAL+       RN VSWNA+I G+++    E+A+ LF  
Sbjct: 220 ---------------------DALE------SRNDVSWNALIAGHARRSGTEKALELFQG 252

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR+G  P+H +      A ++   L  GK  HA  +K   KL  F GN+L+  YAK GS
Sbjct: 253 MLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGS 312

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + D+  +FD+L +R++V+WN+++  YAQ+G G+EA+ +FE MR  GIRPN ++ L +L A
Sbjct: 313 IHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTA 372

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H+GL+++G+ Y+   K +D  + +  HY  +VDLL R+G    A  F+ ++P +P   
Sbjct: 373 CSHSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAA 431

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            WKALL  C++H N ELG +AA  +  LDP+D   +V+L N  +  G+W++ + +R++MK
Sbjct: 432 IWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMK 491

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           E G+ + P CSW+EI++ +H+FV  D  H   +EI         +I+E 
Sbjct: 492 ESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKEL 540



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 175/367 (47%), Gaps = 36/367 (9%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + +++   T  + L  G+ +HA   +   + ++ +G+ +L++Y K  S+EEA +V     
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKV----- 117

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                     F++MP R+ V+W  +I GYSQ  R  +A+  F +
Sbjct: 118 --------------------------FEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ 151

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR G  PN  TL   I AAA       G   H   VK     +V VG++L+  Y + G 
Sbjct: 152 MLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGL 211

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M+D+ LVFD L  RN V+WNA+I G+A+    E+A+E F+ M  +G RP+  +   L  A
Sbjct: 212 MDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGA 271

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+ TG +E+G  +     ++    L       ++D+ ++SG   +A++ ++D      + 
Sbjct: 272 CSSTGFLEQG-KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARK-IFDRLAKRDVV 329

Query: 411 FWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
            W +LL     H      +  F   R + + P ++S   +L+ A S +G  D   +    
Sbjct: 330 SWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLT-ACSHSGLLDEGWHYYEL 388

Query: 469 MKEKGMT 475
           MK+ G+ 
Sbjct: 389 MKKDGIV 395


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/458 (37%), Positives = 271/458 (59%), Gaps = 35/458 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F  + + + +S TT+I    +     EA+ LF  M    +   ++TFGSV+ +   L 
Sbjct: 225 RLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLR 284

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GK++H    + G   NVFVGSA++D+Y K  S+                       
Sbjct: 285 ALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSV----------------------- 321

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                 R+ +A+  F+ M ++NVVSW AM+ GY Q G +EEAV +F +M R G+ P+  T
Sbjct: 322 ------RYAEAV--FKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFT 373

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSLLVFDKL 301
           L   I + AN+A+L  G  FH C     G +  + V N+LI+ Y KCGS+EDS  +FD++
Sbjct: 374 LGSVISSCANLASLEEGAQFH-CQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEM 432

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           + R+ V+W A++ GYAQ G+  E I+ FERM + G++P+ VT + +L AC+  GLVE+G 
Sbjct: 433 SFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQ 492

Query: 362 SYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
            YF ++ L+D G++   +HY CM+DL  R+GR +EAK F+  +PF P    W  LL  C+
Sbjct: 493 QYF-ESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCR 551

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           ++ N E+G++AA  +L LDP++ + Y++LS+  +  GKW NV+ +RR M+EKG  + PG 
Sbjct: 552 LYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGF 611

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           SWI+ KSKV++F   D++   +D+IYA L     ++ E
Sbjct: 612 SWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIE 649



 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 221/415 (53%), Gaps = 12/415 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML---LLNIR 105
           +S  S+S   S++ ++F  +P+ + VS  ++I  +       EA+  ++ M+   +LN+ 
Sbjct: 78  LSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLN 137

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
              F+   ++ SS    DL  G+Q+H    K G  + VFVGS+++D+Y K+  +  A++V
Sbjct: 138 RITFSTMLLLVSSQGCVDL--GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQV 195

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F++    NVV Y TMI GLL+    +D+ +LF  M  R+ +SW  MI G  Q G   EA+
Sbjct: 196 FDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAM 255

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           +LF +M +EG+  +  T    + A   + AL  GK  H   ++     +VFVG++L+  Y
Sbjct: 256 DLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMY 315

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            KC S+  +  VF ++  +N+V+W A++ GY QNG  EEA+  F  M+ NGI P+  TL 
Sbjct: 316 CKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLG 375

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLP 404
            ++ +C +   +E+G  +  QA +   G++     +  ++ L  + G  +++ +   ++ 
Sbjct: 376 SVISSCANLASLEEGAQFHCQALVS--GLISFITVSNALITLYGKCGSIEDSNQLFDEMS 433

Query: 405 FDPGIGFWKALLGG-CQI-HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           F   +  W AL+ G  Q   +N  +  F    +  L P+ V+   +LS A S AG
Sbjct: 434 FRDEVS-WTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLS-ACSRAG 486



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 126/280 (45%), Gaps = 43/280 (15%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
            K+LH    K       F+ + +++ Y KL +I  A  VF+    PN  S+ TM+    K
Sbjct: 24  AKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSK 83

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP-NHSTLPC 245
                   ++F  MP+R+ VSWN++I GY   G   EAV  +  M+++G++  N  T   
Sbjct: 84  SGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFST 143

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            ++  ++   + +G+  H   VKF     VFVG+SL+  YAK G +  +  VFD++ ERN
Sbjct: 144 MLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERN 203

Query: 306 IV-------------------------------TWNAVICGYAQNGRGEEAIEFFERMRI 334
           +V                               +W  +I G  QNG   EA++ F  MR 
Sbjct: 204 VVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQ 263

Query: 335 NGIRPNGVTLLGLLWACN-----------HTGLVEKGYSY 363
            G+  +  T   +L AC            HT ++  GY++
Sbjct: 264 EGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNH 303


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/583 (32%), Positives = 306/583 (52%), Gaps = 79/583 (13%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C S   L K  +LHS    YL++    S   +   ++    V CG       + H 
Sbjct: 251 LLAACASVGDLQKGKQLHS----YLLKA-GMSFDYITEGSLLDLYVKCGD----IETAHD 301

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+     NVV    ++  + +     ++  +F +M    I P++FT+  ++ + T    
Sbjct: 302 IFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQ 361

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           + LG+Q+H+ + K G +S+++V   ++D+Y K   +++A ++ E     +VVS+T+MI G
Sbjct: 362 IELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAG 421

Query: 184 LLKRERFEDALKLFQEMPH-------------------------------RNVVS----- 207
            ++ +  E+AL  F+EM                                 R  VS     
Sbjct: 422 YVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAAD 481

Query: 208 ---WNAMIGGYSQTGRNEEAVNL-------------------------------FIEMLR 233
              WN ++  Y++ GR+EEA +L                               F++M +
Sbjct: 482 ISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQ 541

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G   N  T   AI A AN+A +  GK  H  AVK     +  V N+LIS Y KCGS+ED
Sbjct: 542 AGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIED 601

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + ++F +++ RN V+WN +I   +Q+GRG EA++ F++M+  G++PN VT +G+L AC+H
Sbjct: 602 AKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSH 661

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLVE+G SYF            P+HYAC+VD+L R+G+   A+ F+ ++P       W+
Sbjct: 662 VGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWR 721

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LL  C++H N+E+GE AA+ +L L+P D +SYV+LSNA +V GKW N   +R+ MK++G
Sbjct: 722 TLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRG 781

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           + + PG SWIE+K+ VH F  GDR H ++D+IY  L    +++
Sbjct: 782 IRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRL 824



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 164/361 (45%), Gaps = 33/361 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F    +VF ++   + V+  T+I   A+  H E A+ +F  M L  +RP   T  S++ +
Sbjct: 195 FKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAA 254

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             ++ DL  GKQLH++  K G+  +     ++LDLY+K   IE A  +F      N+   
Sbjct: 255 CASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIF------NLGDR 308

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T                         NVV WN M+  Y Q     ++  +F +M   G+ 
Sbjct: 309 T-------------------------NVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIH 343

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T PC +        + +G+  H+ ++K   + D++V   LI  Y+K   ++ +  +
Sbjct: 344 PNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKI 403

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            + L +R++V+W ++I GY Q+   EEA+  F+ M+  G+ P+ + L     AC     +
Sbjct: 404 LEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAM 463

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            +G    ++  +          +  +V+L +R GR +EA     ++     I  W  L+ 
Sbjct: 464 RQGLQIHARVYVSGYAA-DISIWNTLVNLYARCGRSEEAFSLFREIDHKDEIT-WNGLIS 521

Query: 418 G 418
           G
Sbjct: 522 G 522



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 178/399 (44%), Gaps = 42/399 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVF E+   + VS   ++  +A++   +EA  L+S+M    + P+ +   SV+ + T  +
Sbjct: 99  QVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGK 158

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               G+ +HA   K    S  FVG+A++ LY+   S + A RVF               C
Sbjct: 159 LFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVF---------------C 203

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            +L  +R                V++N +I G++Q G  E A+ +F EM   GL P+  T
Sbjct: 204 DMLFCDR----------------VTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVT 247

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++  L  GK  H+  +K     D     SL+  Y KCG +E +  +F+   
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGD 307

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             N+V WN ++  Y Q     ++ E F +M+  GI PN  T   +L  C  TG +E G  
Sbjct: 308 RTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQ 367

Query: 363 YFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             S   L      + + Y    ++D+ S+     +A++ L  L     +  W +++ G  
Sbjct: 368 IHS---LSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVS-WTSMIAGYV 423

Query: 421 IHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            H   E  L  F   +   + P+++    + S A + AG
Sbjct: 424 QHDFCEEALATFKEMQDCGVWPDNIG---LASAASACAG 459



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 140/291 (48%), Gaps = 39/291 (13%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++HA +   GL ++  +G+ ++DLY K   + +A +VF                      
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVF---------------------- 101

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                    +E+  R+ VSW AM+ GY+Q G  +EA  L+ +M    ++P    L   + 
Sbjct: 102 ---------KELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLS 152

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A         G+  HA   K     + FVGN+LI+ Y   GS + +  VF  +   + VT
Sbjct: 153 ACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVT 212

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
           +N +I G+AQ G GE A++ F+ M+++G+RP+ VT+  LL AC   G ++KG   +SY  
Sbjct: 213 FNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLL 272

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +A +    + +      ++DL  + G  + A + +++L     +  W  +L
Sbjct: 273 KAGMSFDYITE----GSLLDLYVKCGDIETAHD-IFNLGDRTNVVLWNLML 318



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 14/228 (6%)

Query: 239 NHSTLPCAIIAAANIAALGMGKSF------HACAV-KFLGKLDVFVGNSLISFYAKCGSM 291
           +H  L  A +  A  A  G G  +      HA +V + LG  D  +GN LI  YAK G +
Sbjct: 36  HHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGA-DRLIGNLLIDLYAKNGLV 94

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             +  VF +L+ R+ V+W A++ GYAQ G G+EA   + +M    + P    L  +L AC
Sbjct: 95  WQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSAC 154

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
               L  +G    +Q   +       E +    ++ L    G FK A+    D+ F   +
Sbjct: 155 TKGKLFAQGRMIHAQVYKQ---AFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRV 211

Query: 410 GFWKALLGGCQI-HSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
            F   + G  Q  H    L  F   ++  L P+ V+   +L+   SV 
Sbjct: 212 TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVG 259


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/479 (36%), Positives = 272/479 (56%), Gaps = 12/479 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML--LLNIRP 106
           +S  S S  F+  H + D++P  N+VS  ++I         +E++ +F  ML    N+  
Sbjct: 87  ISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLF 146

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
            EFT  S++ S  +L    L +Q+H  A  +GL SN+ +G+A++D Y K    + +  +F
Sbjct: 147 DEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIF 206

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                 +VVS+T+M+    +  R EDA  LF +M  +N VSW A+I G++Q GR +EA++
Sbjct: 207 SRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALH 266

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA------CAVKFLGKLDVFVGNS 280
           LF +M  EG+ P+  T    + A A++A +  GK  H       C   F    ++F+ N+
Sbjct: 267 LFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFC---NIFILNA 323

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI  Y KCG M  +  +F  + E++IV+WN++I G+AQNG GEE++  FERM    IRPN
Sbjct: 324 LIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPN 383

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            VT LGLL AC HTGLV +G       + +     + +HYA M+DLL R+ R +EA   +
Sbjct: 384 HVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLI 443

Query: 401 YDLPFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
              P     +G W ALLG C+IH N++L   AA  +  L+P + + YVM+ N  + A +W
Sbjct: 444 KRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRW 503

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           D    +RR M E+G+ +   CSWIE+++  H FV  +R+H   +E+Y V+ +  +Q+ +
Sbjct: 504 DEARQVRRLMMERGLRKEAACSWIEVRNTRHQFVAKERSHCQINEVYEVIHNLVDQMYD 562



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 168/361 (46%), Gaps = 52/361 (14%)

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
           L ++ P+   + S+I        L LGK LH+   K  L    F+ + ++D Y K  SI+
Sbjct: 7   LSSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQ 66

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
            A +VF      N  S+  +I    +   F +A  L  +MP  N+VS+N++I G    G 
Sbjct: 67  SAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGF 126

Query: 221 NEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
            +E++N+F  ML++   ++ +  TL   + + A++ A  + +  H  A+      ++ +G
Sbjct: 127 RKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIG 186

Query: 279 NSLISFYAKCGS-------------------------------MEDSLLVFDKLTERNIV 307
           N+LI  Y KCG                                +ED+  +F ++ E+N V
Sbjct: 187 NALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTV 246

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYF 364
           +W A+I G+AQNGRG+EA+  FE+MR  GI P+  T   +L AC    L+ +G   + + 
Sbjct: 247 SWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHI 306

Query: 365 SQAKLEDPGMLKPEHYAC-------MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            ++   D        Y C       ++D+  + G+ + A   L+    +  I  W +L+ 
Sbjct: 307 IRSTCID--------YFCNIFILNALIDMYCKCGQMRSATT-LFKGMHEKDIVSWNSLIT 357

Query: 418 G 418
           G
Sbjct: 358 G 358



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 106/201 (52%), Gaps = 8/201 (3%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+  +++ +    H +F ++ + N VS T +I  FA+    +EA++LF +M    I 
Sbjct: 218 TSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIP 277

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAW---ATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           PS FTF SV+ +   L  +  GK++H     +T +    N+F+ +A++D+Y K   +  A
Sbjct: 278 PSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSA 337

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQT 218
           T +F+  H  ++VS+ ++I G  +    E++L +F+ M   ++    V++  ++     T
Sbjct: 338 TTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHT 397

Query: 219 GRNEEAVNLFIEMLRE-GLVP 238
           G   E + +   M ++ G+ P
Sbjct: 398 GLVSEGLRILDSMEKDYGVCP 418


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/505 (35%), Positives = 289/505 (57%), Gaps = 14/505 (2%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQ-KLETPAIRTDSVSCGS-ESDKFSSVHQVF 65
           C++S+S N +  L +   N  IE  +   + K +   I  + +  G  + ++      +F
Sbjct: 89  CKNSISWNGM--LAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIF 146

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           D +P+ + VS  T+I  +A+     EA  LF    + ++    FT+ +++        L+
Sbjct: 147 DRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLD 202

Query: 126 LGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
             +++       G+ + N    +AI+  Y++   +++A  +FE     NV S+ TMI G 
Sbjct: 203 EARRVFD-----GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGY 257

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
            +      A   F  MP R+ +SW A+I GY+Q+G  EEA++LF+EM R+G   N ST  
Sbjct: 258 AQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFT 317

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             +   A IAAL +GK  H   VK   +   +VGN+L+  Y KCG+++D+ +VF+ + E+
Sbjct: 318 STLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK 377

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
            +V+WN +I GYA++G G+EA+  FE M+  GI P+ VT++G+L AC+HTGLV+KG  YF
Sbjct: 378 EVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYF 437

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
                +       +HY CM+DLL R+GR  +A+  + ++PF+P    W ALLG  +IH N
Sbjct: 438 YSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGN 497

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
            ELGE AA+ I  ++P++   YV+LSN  + +G+W +V  +R  M+++G+ +VPG SW+E
Sbjct: 498 TELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVE 557

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVL 509
           +++K+H F  GD  H   D IY  L
Sbjct: 558 VQNKIHTFTVGDSVHPERDRIYTFL 582



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 145/325 (44%), Gaps = 72/325 (22%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++P+ +VVS   ++  +A+  + +EA  +F  M                P   ++  
Sbjct: 52  LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----------------PCKNSI-- 93

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
                   +W             + +L  Y++   IE+A R+FE   +  ++S+  M+ G
Sbjct: 94  --------SW-------------NGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGG 132

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE------------- 230
            +KR R  DA  +F  MP R+ VSWN MI GY+Q G   EA  LF E             
Sbjct: 133 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 192

Query: 231 -------MLREGL-----VPNHSTLPCAIIAAANIAALGMGKS---FHACAVKFLGKLDV 275
                  ML E       +P  +++    I A  +    M ++   F A   +     +V
Sbjct: 193 SGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-----NV 247

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
              N++I+ YA+ G +  +   FD++ +R+ ++W A+I GYAQ+G GEEA+  F  M+ +
Sbjct: 248 SSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRD 307

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKG 360
           G R N  T    L  C     +E G
Sbjct: 308 GERLNRSTFTSTLSTCAEIAALELG 332



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 125/267 (46%), Gaps = 17/267 (6%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           + +V   +A+L  Y +   ++EA  +F++    N +S+  M+   ++  R EDA +LF+ 
Sbjct: 58  ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES 117

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
                ++SWN M+GGY +  R  +A  +F  M     V  ++ +      A N   L   
Sbjct: 118 KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISG---YAQNGELLEAQ 174

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           + F    V+     DVF   +++S Y + G ++++  VFD + E+N V+WNA+I GY Q 
Sbjct: 175 RLFEESPVR-----DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQC 229

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
            R ++A E FE M    +      + G        G + +  ++F +    D        
Sbjct: 230 KRMDQARELFEAMPCQNVSSWNTMITGYA----QNGDIAQARNFFDRMPQRD-----SIS 280

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFD 406
           +A ++   ++SG  +EA     ++  D
Sbjct: 281 WAAIIAGYAQSGYGEEALHLFVEMKRD 307



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 126/300 (42%), Gaps = 39/300 (13%)

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G ++      A  LF +MP R+VVSWNAM+ GY+Q G  +EA  +F EM           
Sbjct: 39  GCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----------- 87

Query: 243 LPC--AIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLVF 298
            PC  +I     +AA             F  K D  +   N ++  Y K   + D+  +F
Sbjct: 88  -PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIF 146

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D++ ER+ V+WN +I GYAQNG   EA   FE   +  +           W    +G V+
Sbjct: 147 DRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV---------FTWTAMVSGYVQ 197

Query: 359 KGYSYFSQAKLEDPGMLKPEH----YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            G     +A+    GM  PE     +  ++    +  R  +A+E    +P    +  W  
Sbjct: 198 NG--MLDEARRVFDGM--PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNT 252

Query: 415 LLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ++ G   + ++      AR      P+ D  S+  +    + +G  +   ++  EMK  G
Sbjct: 253 MITGYAQNGDIA----QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 308


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 268/456 (58%), Gaps = 33/456 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  + D + ++ TT++    +     EA+ +F RM    +   ++TFGS++ +  AL  
Sbjct: 234 LFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 293

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+HA+ T+   + NVFVGSA++D+Y K  SI  A  VF                 
Sbjct: 294 LEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF----------------- 336

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                         + M  RN++SW AMI GY Q   +EEAV  F EM  +G+ P+  TL
Sbjct: 337 --------------RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I + AN+A+L  G  FH  A+       + V N+L++ Y KCGS+ED+  +FD+++ 
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            + V+W A++ GYAQ G+ +E I+ FE+M  NG++P+GVT +G+L AC+  GLVEKG  Y
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 364 FSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           F   + +D G++   +HY CM+DL SRSGRFKEA+EF+  +P  P    W  LL  C++ 
Sbjct: 503 FDSMQ-KDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLR 561

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+E+G++AA  +L  DP++ +SYV+L +  +  G+W  V+++RR M+++ + + PGCSW
Sbjct: 562 GNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSW 621

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           I+ K+KVH+F   D++H  +  IY  L     ++ E
Sbjct: 622 IKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAE 657



 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 203/376 (53%), Gaps = 5/376 (1%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-N 103
           R   +S  + S     + ++F  +P+ + VS   +I  F+       ++ L+  +L   +
Sbjct: 82  RNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREES 141

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +RP+  T  ++I  ++AL D  LG  +H    ++G  +  FVGS ++D+Y K+  I +A 
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDAR 201

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           RVF++     VV Y T+I GLL+ +  EDA  LFQ M  R+ ++W  M+ G +Q G   E
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLE 261

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A+++F  M  EG+  +  T    + A   +AAL  GK  HA   +   + +VFVG++L+ 
Sbjct: 262 ALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVD 321

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KC S+  +  VF ++T RNI++W A+I GY QN   EEA+  F  M+++GI+P+  T
Sbjct: 322 MYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYD 402
           L  ++ +C +   +E+G  +   A +   G+++    +  +V L  + G  ++A     +
Sbjct: 382 LGSVISSCANLASLEEGAQFHCLALVS--GLMRYITVSNALVTLYGKCGSIEDAHRLFDE 439

Query: 403 LPFDPGIGFWKALLGG 418
           + F   +  W AL+ G
Sbjct: 440 MSFHDQVS-WTALVTG 454



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 142/306 (46%), Gaps = 44/306 (14%)

Query: 130 LHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           +H    K  LQ+   F+ + +L  Y K   +  A RVF++  +PN+ +   ++  L    
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAI 247
              D  +LF  MP R+ VS+NA+I G+S TG    +V L+  +LRE  V P   TL   I
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 248 IAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAK------------------- 287
           + A+ ++   +G S H C V  LG     FVG+ L+  YAK                   
Sbjct: 154 MVASALSDRALGHSVH-CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 288 ------------CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
                       C  +ED+  +F  + +R+ +TW  ++ G  QNG   EA++ F RMR  
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLS--RS 390
           G+  +  T   +L AC     +E+G   ++Y ++   ED   +     + +VD+ S  RS
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVG----SALVDMYSKCRS 328

Query: 391 GRFKEA 396
            R  EA
Sbjct: 329 IRLAEA 334


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/469 (37%), Positives = 287/469 (61%), Gaps = 36/469 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTF 111
           ++S + +   Q F+E+P  +++  + +I R+A+    +EA+ LF RM   ++  P+ FTF
Sbjct: 251 TKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTF 310

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            SV+ +  +L  LNLG Q+H+   KVGL SNVFV +A++D+Y K                
Sbjct: 311 ASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAK---------------- 354

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                     CG       E+++KLF     +N V+WN +I GY Q G  E+A+NLF  M
Sbjct: 355 ----------CG-----EIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNM 399

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           L   + P   T    + A+A++ AL  G+  H+  +K +   D  V NSLI  YAKCG +
Sbjct: 400 LGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRI 459

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +D+ L FDK+ +++ V+WNA+ICGY+ +G G EA+  F+ M+ +  +PN +T +G+L AC
Sbjct: 460 DDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSAC 519

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           ++ GL++KG ++F ++ L+D G ++P  EHY CMV LL RSG+F EA + + ++PF P +
Sbjct: 520 SNAGLLDKGRAHF-KSMLQDYG-IEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSV 577

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W+ALLG C IH N++LG+  A+R+L ++P+D +++V+LSN  + A +WDNV+ +R+ M
Sbjct: 578 MVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNM 637

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           K+K + + PG SW+E +  VH F  GD +H     I+A+L    ++ R+
Sbjct: 638 KKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRD 686



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 154/299 (51%), Gaps = 32/299 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FDE+P  N VS  T+   F++ H ++ A  L  R+       ++F F +++    +++
Sbjct: 59  KLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMD 118

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             +    +HA+  K+G Q++ FVG+A++D Y    +++ A +VF+  +            
Sbjct: 119 LADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIY------------ 166

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                         F++M     VSW  M+  Y++   +E+++ LF +M   G  PN+ T
Sbjct: 167 --------------FKDM-----VSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFT 207

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +  A+ +   + A  +GKS H CA+K     D++VG +L+  Y K G + ++   F+++ 
Sbjct: 208 ISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMP 267

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKG 360
           + +++ W+ +I  YAQ+ + +EA+E F RMR +  + PN  T   +L AC    L+  G
Sbjct: 268 KDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLG 326



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 137/306 (44%), Gaps = 44/306 (14%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           ++ +++  +    D N GK LH    K G   ++F  + +L+ Y+               
Sbjct: 5   SYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHF------------- 51

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                        G L     EDA KLF EMP  N VS+  +  G+S++ + + A  L +
Sbjct: 52  -------------GFL-----EDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLL 93

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            + REG   N       +    ++       S HA   K   + D FVG +LI  Y+ CG
Sbjct: 94  RLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCG 153

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           +++ +  VFD +  +++V+W  ++  YA+N   E+++  F +MRI G RPN  T+   L 
Sbjct: 154 NVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALK 213

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYA--CMVDLLSRSGRFKEAKEFLYDL 403
           +CN       G   F   K      LK     + Y    +++L ++SG   EA++F  ++
Sbjct: 214 SCN-------GLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEM 266

Query: 404 PFDPGI 409
           P D  I
Sbjct: 267 PKDDLI 272


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 268/456 (58%), Gaps = 33/456 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  + D + ++ TT++    +     EA+ +F RM    +   ++TFGS++ +  AL  
Sbjct: 234 LFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 293

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+HA+ T+   + NVFVGSA++D+Y K  SI  A  VF                 
Sbjct: 294 LEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF----------------- 336

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                         + M  RN++SW AMI GY Q   +EEAV  F EM  +G+ P+  TL
Sbjct: 337 --------------RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I + AN+A+L  G  FH  A+       + V N+L++ Y KCGS+ED+  +FD+++ 
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            + V+W A++ GYAQ G+ +E I+ FE+M  NG++P+GVT +G+L AC+  GLVEKG  Y
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 364 FSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           F   + +D G++   +HY CM+DL SRSGRFKEA+EF+  +P  P    W  LL  C++ 
Sbjct: 503 FDSMQ-KDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLR 561

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+E+G++AA  +L  DP++ +SYV+L +  +  G+W  V+++RR M+++ + + PGCSW
Sbjct: 562 GNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSW 621

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           I+ K+KVH+F   D++H  +  IY  L     ++ E
Sbjct: 622 IKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAE 657



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 198/360 (55%), Gaps = 5/360 (1%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSST 119
           + ++F  +P+ + VS   +I  F+       ++ L+  +L   ++RP+  T  ++I  ++
Sbjct: 98  MERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVAS 157

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           AL D  LG  +H    ++G  +  FVGS ++D+Y K+  I +A RVF++     VV Y T
Sbjct: 158 ALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNT 217

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           +I GLL+ +  EDA  LFQ M  R+ ++W  M+ G +Q G   EA+++F  M  EG+  +
Sbjct: 218 LITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGID 277

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T    + A   +AAL  GK  HA   +   + +VFVG++L+  Y+KC S+  +  VF 
Sbjct: 278 QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++T RNI++W A+I GY QN   EEA+  F  M+++GI+P+  TL  ++ +C +   +E+
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEE 397

Query: 360 GYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           G  +   A +   G+++    +  +V L  + G  ++A     ++ F   +  W AL+ G
Sbjct: 398 GAQFHCLALVS--GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALVTG 454



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 142/306 (46%), Gaps = 44/306 (14%)

Query: 130 LHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           +H    K  LQ+   F+ + +L  Y K   +  A RVF++  +PN+ +   ++  L    
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAI 247
              D  +LF  MP R+ VS+NA+I G+S TG    +V L+  +LRE  V P   TL   I
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 248 IAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAK------------------- 287
           + A+ ++   +G S H C V  LG     FVG+ L+  YAK                   
Sbjct: 154 MVASALSDRALGHSVH-CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 288 ------------CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
                       C  +ED+  +F  + +R+ +TW  ++ G  QNG   EA++ F RMR  
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLS--RS 390
           G+  +  T   +L AC     +E+G   ++Y ++   ED   +     + +VD+ S  RS
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVG----SALVDMYSKCRS 328

Query: 391 GRFKEA 396
            R  EA
Sbjct: 329 IRLAEA 334


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 284/520 (54%), Gaps = 45/520 (8%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + +L  C S  +L +  ++     +++IE    S  ++ T A+ +    CGS  D     
Sbjct: 417 MSILGACSSPSALKRGQQIQ----DHIIEAGYGSDDRVRT-ALLSMYAKCGSLKD----A 467

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H+VF+++   NVV+   +I  + +   Y+ A+  F  +L   I+P+  TF S++    + 
Sbjct: 468 HRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + L LGK +H    K GL+S++ V +A++ +++                           
Sbjct: 528 DSLELGKWVHFLIMKAGLESDLHVSNALVSMFVN-------------------------- 561

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG L       A  LF +MP R++VSWN +I G+ Q G+N+ A + F  M   G+ P+  
Sbjct: 562 CGDLM-----SAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI 616

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A A+  AL  G+  HA   +     DV VG  LIS Y KCGS+ED+  VF KL
Sbjct: 617 TFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKL 676

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ++N+ +W ++I GYAQ+GRG+EA+E F +M+  G++P+ +T +G L AC H GL+E+G 
Sbjct: 677 PKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGL 736

Query: 362 SYFSQAKL--EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            +F   K    +P M   EHY CMVDL  R+G   EA EF+  +  +P    W ALLG C
Sbjct: 737 HHFQSMKEFNIEPRM---EHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGAC 793

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           Q+H NVEL E AA++ L LDP D   +V+LSN  + AG W  V+ +R+ M ++G+ + PG
Sbjct: 794 QVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPG 853

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            SWIE+  KVH F + D+ H   +EI+A L     ++R+ 
Sbjct: 854 QSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQL 893



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 170/301 (56%), Gaps = 31/301 (10%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  Q+FD++ + +V S   ++G + +   YEEA  L  +M+  +++P + TF S++ +  
Sbjct: 163 SAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              +++ G++L+    K G  +++FVG+A+++++IK   I +AT+VF++           
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDN----------- 271

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                               +P R++V+W +MI G ++ GR ++A NLF  M  EG+ P+
Sbjct: 272 --------------------LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                  + A  +  AL  GK  HA   +     +++VG +++S Y KCGSMED+L VFD
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            +  RN+V+W A+I G+AQ+GR +EA  FF +M  +GI PN VT + +L AC+    +++
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 360 G 360
           G
Sbjct: 432 G 432



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 192/400 (48%), Gaps = 43/400 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           + CG   D      +VFD +P  ++V+ T++I   A+   +++A  LF RM    ++P +
Sbjct: 257 IKCGDIGD----ATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             F S++ +    E L  GK++HA   +VG  + ++VG+AIL +Y K  S+E+A  VF+ 
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               NVVS+T MI G                               ++Q GR +EA   F
Sbjct: 373 VKGRNVVSWTAMIAG-------------------------------FAQHGRIDEAFLFF 401

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M+  G+ PN  T    + A ++ +AL  G+      ++     D  V  +L+S YAKC
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC 461

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS++D+  VF+K++++N+V WNA+I  Y Q+ + + A+  F+ +   GI+PN  T   +L
Sbjct: 462 GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521

Query: 349 WACNHTGLVEKG-YSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFD 406
             C  +  +E G + +F   K    G+    H +  +V +    G    AK    D+P  
Sbjct: 522 NVCKSSDSLELGKWVHFLIMK---AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR 578

Query: 407 PGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVS 444
             +  W  ++ G   H  + V    F   +   + P+ ++
Sbjct: 579 DLVS-WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKIT 617



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 183/365 (50%), Gaps = 39/365 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF ++ D     A  ++ R +K   + EA+ +  R+   +I+    T+ +++      ++
Sbjct: 68  VFADIKDTQ--KANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G++++    K G+Q ++F+ + ++++Y K  +   A ++F+D               
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDD--------------- 170

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                           M  ++V SWN ++GGY Q G  EEA  L  +M+++ + P+  T 
Sbjct: 171 ----------------MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF 214

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A+   +  G+  +   +K     D+FVG +LI+ + KCG + D+  VFD L  
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPT 274

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R++VTW ++I G A++GR ++A   F+RM   G++P+ V  + LL ACNH   +E+G   
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334

Query: 364 FSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
              A++++ G    E Y    ++ + ++ G  ++A E ++DL     +  W A++ G   
Sbjct: 335 --HARMKEVG-WDTEIYVGTAILSMYTKCGSMEDALE-VFDLVKGRNVVSWTAMIAGFAQ 390

Query: 422 HSNVE 426
           H  ++
Sbjct: 391 HGRID 395


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 284/520 (54%), Gaps = 45/520 (8%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + +L  C S  +L +  ++     +++IE    S  ++ T A+ +    CGS  D     
Sbjct: 417 MSILGACSSPSALKRGQQIQ----DHIIEAGYGSDDRVRT-ALLSMYAKCGSLKD----A 467

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H+VF+++   NVV+   +I  + +   Y+ A+  F  +L   I+P+  TF S++    + 
Sbjct: 468 HRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + L LGK +H    K GL+S++ V +A++ +++                           
Sbjct: 528 DSLELGKWVHFLIMKAGLESDLHVSNALVSMFVN-------------------------- 561

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG L       A  LF +MP R++VSWN +I G+ Q G+N+ A + F  M   G+ P+  
Sbjct: 562 CGDLM-----SAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI 616

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A A+  AL  G+  HA   +     DV VG  LIS Y KCGS+ED+  VF KL
Sbjct: 617 TFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKL 676

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ++N+ +W ++I GYAQ+GRG+EA+E F +M+  G++P+ +T +G L AC H GL+E+G 
Sbjct: 677 PKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGL 736

Query: 362 SYFSQAKL--EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            +F   K    +P M   EHY CMVDL  R+G   EA EF+  +  +P    W ALLG C
Sbjct: 737 HHFQSMKEFNIEPRM---EHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGAC 793

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           Q+H NVEL E AA++ L LDP D   +V+LSN  + AG W  V+ +R+ M ++G+ + PG
Sbjct: 794 QVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPG 853

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            SWIE+  KVH F + D+ H   +EI+A L     ++R+ 
Sbjct: 854 QSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQL 893



 Score =  184 bits (468), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 97/301 (32%), Positives = 170/301 (56%), Gaps = 31/301 (10%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  Q+FD++ + +V S   ++G + +   YEEA  L  +M+  +++P + TF S++ +  
Sbjct: 163 SAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACA 222

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              +++ G++L+    K G  +++FVG+A+++++IK   I +AT+VF++           
Sbjct: 223 DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDN----------- 271

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                               +P R++V+W +MI G ++ GR ++A NLF  M  EG+ P+
Sbjct: 272 --------------------LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                  + A  +  AL  GK  HA   +     +++VG +++S Y KCGSMED+L VFD
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            +  RN+V+W A+I G+AQ+GR +EA  FF +M  +GI PN VT + +L AC+    +++
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 360 G 360
           G
Sbjct: 432 G 432



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 192/400 (48%), Gaps = 43/400 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           + CG   D      +VFD +P  ++V+ T++I   A+   +++A  LF RM    ++P +
Sbjct: 257 IKCGDIGD----ATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             F S++ +    E L  GK++HA   +VG  + ++VG+AIL +Y K  S+E+A  VF+ 
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               NVVS+T MI G                               ++Q GR +EA   F
Sbjct: 373 VKGRNVVSWTAMIAG-------------------------------FAQHGRIDEAFLFF 401

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M+  G+ PN  T    + A ++ +AL  G+      ++     D  V  +L+S YAKC
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKC 461

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS++D+  VF+K++++N+V WNA+I  Y Q+ + + A+  F+ +   GI+PN  T   +L
Sbjct: 462 GSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSIL 521

Query: 349 WACNHTGLVEKG-YSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFD 406
             C  +  +E G + +F   K    G+    H +  +V +    G    AK    D+P  
Sbjct: 522 NVCKSSDSLELGKWVHFLIMK---AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR 578

Query: 407 PGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVS 444
             +  W  ++ G   H  + V    F   +   + P+ ++
Sbjct: 579 DLVS-WNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKIT 617



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 183/365 (50%), Gaps = 39/365 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF ++ D     A  ++ R +K   + EA+ +  R+   +I+    T+ +++      ++
Sbjct: 68  VFADIKDTQ--KANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKN 125

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G++++    K G+Q ++F+ + ++++Y K  +   A ++F+D               
Sbjct: 126 LGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDD--------------- 170

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                           M  ++V SWN ++GGY Q G  EEA  L  +M+++ + P+  T 
Sbjct: 171 ----------------MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTF 214

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A+   +  G+  +   +K     D+FVG +LI+ + KCG + D+  VFD L  
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPT 274

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R++VTW ++I G A++GR ++A   F+RM   G++P+ V  + LL ACNH   +E+G   
Sbjct: 275 RDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334

Query: 364 FSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
              A++++ G    E Y    ++ + ++ G  ++A E ++DL     +  W A++ G   
Sbjct: 335 --HARMKEVG-WDTEIYVGTAILSMYTKCGSMEDALE-VFDLVKGRNVVSWTAMIAGFAQ 390

Query: 422 HSNVE 426
           H  ++
Sbjct: 391 HGRID 395


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 176/503 (34%), Positives = 284/503 (56%), Gaps = 45/503 (8%)

Query: 49  VSCGSESDKFSSVHQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           ++C + + + +    +F+ +P   N V    ++  +AK   ++EA  LF  M   ++   
Sbjct: 2   ITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDL--- 58

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             ++ S++   T   ++ LG Q      +   + +V   + ++D ++++  +  +   FE
Sbjct: 59  -VSWNSMLTGYTRNGEMRLGLQFF----EEMAERDVVSWNLMVDGFVEVGDLNSSWEFFE 113

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
              NPN VS+ TM+CG  +  +  +A +LF +MP RNVV+WNAMI  Y Q    +EA++L
Sbjct: 114 KIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISL 173

Query: 228 FIEM---------------LREGLV---------------PNHSTLPCAIIAAANIAALG 257
           F+EM               +R G +               P+ ST  C + + A++AAL 
Sbjct: 174 FMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQ 233

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           +GK  H   +K     D+FV N+LI+ YAKCGS+  + L+F  +   ++V+WN++I  YA
Sbjct: 234 VGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYA 293

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS---QAKLEDPGM 374
            NG G EA++ F +M + G+ P+ VT +G+L AC+H GL+++G   F    QA   +P  
Sbjct: 294 LNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP-- 351

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR 434
              EHYACMVDLL R+GR +EA + +  +  +   G W ALLG C+IH N+EL +FAA +
Sbjct: 352 -LAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEK 410

Query: 435 ILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVT 494
           +L  +P   S+YV+LSN  + AG+WD V+ +RR MKEKG  + PG SWIE++++VH F++
Sbjct: 411 LLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLS 470

Query: 495 GDRNHHMNDEIYAVLRSCTEQIR 517
            D  H    E+  +LRS T  +R
Sbjct: 471 EDPAHPRAVELCHILRSLTAHMR 493



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 26/231 (11%)

Query: 180 MICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           MI    +      A  LF  +P++ N V  NAM+ GY++  + +EA  LF  M  + LV 
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
            +S L            + +G  F     + + + DV   N ++  + + G +  S   F
Sbjct: 61  WNSML----TGYTRNGEMRLGLQF----FEEMAERDVVSWNLMVDGFVEVGDLNSSWEFF 112

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           +K+   N V+W  ++CG+A+ G+  EA   F++M I  +      +   +  C+    V+
Sbjct: 113 EKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCH----VD 168

Query: 359 KGYSYFSQAKLEDPGMLKPEH----YACMVDLLSRSGRFKEAKEFLYDLPF 405
           +  S F         M  PE     +  +++   R G+  EA++ L  +P+
Sbjct: 169 EAISLF---------MEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPY 210


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 265/455 (58%), Gaps = 31/455 (6%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  + D + ++ TT++    +     EA+ +F RM    +   ++TFGS++ +  AL  
Sbjct: 234 LFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 293

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              GKQ+HA+ T+   + NVFVGSA++D+Y K  SI  A  VF                 
Sbjct: 294 SEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVF----------------- 336

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                         + M  RN++SW AMI GY Q   +EEAV  F EM  +G+ P+  TL
Sbjct: 337 --------------RRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I + AN+A+L  G  FH  A+       + V N+L++ Y KCGS+ED+  +FD+++ 
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            + V+W A++ GYAQ G+ +E I+ FE+M +NG++P+GVT +G+L AC+  GLVEKG  Y
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDY 502

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F   + +   +   +HY CM+DL SRSGRFKEA+EF+  +P  P    W  LL  C++  
Sbjct: 503 FDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRG 562

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N+E+G++AA  +L  DP++ +SYV+L +  +  G+W  V+++RR M+++ + + PGCSWI
Sbjct: 563 NMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWI 622

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + K+KVH+F   D++H  +  IY  L     ++ E
Sbjct: 623 KYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAE 657



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/451 (29%), Positives = 232/451 (51%), Gaps = 25/451 (5%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSST 119
           + ++F  +P+ + VS   +I  F+       ++ L+  +L   ++RP+  T  ++I  ++
Sbjct: 98  MERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVAS 157

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           AL D  LG  +H    ++G  +  FVGS ++D+Y K+  I +A RVF++     VV Y T
Sbjct: 158 ALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNT 217

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           +I GLL+ +  EDA  LFQ M  R+ ++W  M+ G +Q G   EA+++F  M  EG+  +
Sbjct: 218 LITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGID 277

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T    + A   +AA   GK  HA   +   + +VFVG++L+  Y+KC S+  +  VF 
Sbjct: 278 QYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++T RNI++W A+I GY QN   EEA+  F  M+++GI+P+  TL  ++ +C +   +E+
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEE 397

Query: 360 GYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           G  +   A +   G+++    +  +V L  + G  ++A     ++ F   +  W AL+ G
Sbjct: 398 GAQFHCLALVS--GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALVTG 454

Query: 419 -CQIHSNVE-LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             Q     E +  F    +  L P+ V +++ + +A S AG           + EK    
Sbjct: 455 YAQFGKAKETIDLFEKMLVNGLKPDGV-TFIGVLSACSRAG-----------LVEK---- 498

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
             GC + +   K H  V  D ++    ++Y+
Sbjct: 499 --GCDYFDSMQKDHDIVPIDDHYTCMIDLYS 527



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 141/306 (46%), Gaps = 44/306 (14%)

Query: 130 LHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           +H    K  LQ+   F+ + +L  Y K   +  A RVF++  +PN+ +   ++  L    
Sbjct: 34  VHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSR 93

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAI 247
              D  +LF  MP R+ VS+NA+I G+S TG    +V L+  +LRE  V P   TL   I
Sbjct: 94  LVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMI 153

Query: 248 IAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAK------------------- 287
           + A+ ++   +G S H C V  LG     FVG+ L+  YAK                   
Sbjct: 154 MVASALSDRALGHSVH-CQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTV 212

Query: 288 ------------CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
                       C  +ED+  +F  + +R+ +TW  ++ G  QNG   EA++ F RMR  
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLS--RS 390
           G+  +  T   +L AC      E+G   ++Y ++   ED   +     + +VD+ S  RS
Sbjct: 273 GVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVG----SALVDMYSKCRS 328

Query: 391 GRFKEA 396
            R  EA
Sbjct: 329 IRLAEA 334


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 167/427 (39%), Positives = 256/427 (59%)

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150
           +AI LF R+   ++ P  FT  SV+ +   L DL+ G+ LH    KVG +SN+++ + I+
Sbjct: 111 DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIV 170

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
            LY     + EA  +FE     +VV++  MI  L+K+   E A  LF  MP RNV SW +
Sbjct: 171 HLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTS 230

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           MI GY Q G+ +EA++LF +M   G+  N  T+   + A A++ AL +G   H  + +  
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 290

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            K +V + N+LI  Y KCG +E++  VF+++ ER +V+W+A+I G A +GR EEA+  F 
Sbjct: 291 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 350

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            M   GI PNGVT +GLL AC+H GL+ +G  +F+    +   + + EHY CMVDLLSR+
Sbjct: 351 DMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRA 410

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450
           G   EA EF+ ++P  P    W ALLG C++H NVE+ E A + +L LDP +   YV+LS
Sbjct: 411 GLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLS 470

Query: 451 NALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           N  + AG+W++ + +R+ MK++ + + PG S I +   VH FV G+ +H   ++I+    
Sbjct: 471 NIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWE 530

Query: 511 SCTEQIR 517
              E++R
Sbjct: 531 ELLEEMR 537



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 153/336 (45%), Gaps = 52/336 (15%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           + +F  +P+ NV S T++I  + +    +EAI+LF++M    ++ +E T  +V+ +   L
Sbjct: 214 YDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADL 273

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L+LG ++H ++ + G + NV + + ++D+Y+K   +EEA +VFE+     VVS++ MI
Sbjct: 274 GALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMI 333

Query: 182 CGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GL 236
            GL    R E+AL+LF +M       N V++  ++   S  G   E    F  M R+ G+
Sbjct: 334 GGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGI 393

Query: 237 VP--------------------------NHSTLPCAIIAAANIAALGMGKSFHAC--AVK 268
           +P                          N    P  ++  A + A  + K+      A+K
Sbjct: 394 IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 269 FLGKLDVFVGNSLI---SFYAKCGSMEDSLLVFDKLTERNIVT---WNAV---------I 313
            L +LD       +   + YA+ G  ED+  V   + +R +     W+++         +
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFV 513

Query: 314 CGYAQNGRGEEAI----EFFERMRINGIRPNGVTLL 345
            G   +   E+      E  E MR+ G  PN   +L
Sbjct: 514 AGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 549



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 131/286 (45%), Gaps = 42/286 (14%)

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           WN+ +   ++     +A+ LF  + +  + P+  T    + A  N+  L  G+  H    
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN----------------- 310
           K   + ++++ N ++  YA CG M ++ L+F+K+ +R++VTWN                 
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 311 --------------AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
                         ++I GY Q G+ +EAI  F +M   G++ N VT++ +L AC   G 
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 357 VEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           ++ G   + Y ++   +    +       ++D+  + G  +EA +   ++  +  +  W 
Sbjct: 276 LDLGMRIHEYSNRHGFKRNVRIS----NTLIDMYVKCGCLEEACKVFEEME-ERTVVSWS 330

Query: 414 ALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           A++GG  +H   E  L  F+    + ++P  V +++ L +A S  G
Sbjct: 331 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGV-TFIGLLHACSHMG 375


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 164/449 (36%), Positives = 268/449 (59%), Gaps = 1/449 (0%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           ++VF  +P  +VVS  ++I  F +    EEA+ LF  M   N++P+  T   V+ +    
Sbjct: 191 YRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKK 250

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D   G+ +H++  +  +  ++ + +A+LD+Y K  S+E+A R+F+     ++VS+TTM+
Sbjct: 251 SDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTML 310

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNH 240
            G  K   ++ A  +F  MP++++ +WNA+I  Y Q G+ +EA+ LF E+ L +   P+ 
Sbjct: 311 VGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDE 370

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL   + A A + A+ +G   H    K   KL+  +  SLI  Y KCG ++ +L+VF  
Sbjct: 371 VTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHS 430

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +  +++  W+A+I G A +G G++AI  F +M+ + ++PN VT   +L AC+H GLVE+G
Sbjct: 431 VERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEG 490

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
            ++F+Q +L    +   +HYACMVD+L R+G  +EA E +  +P  P    W ALLG C 
Sbjct: 491 RTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACT 550

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH NV L E A  +++ L+P +  +YV+LSN  + AGKWD VS +R+ M++ G+ + PGC
Sbjct: 551 IHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGC 610

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           S IE+   VH F+ GD +H    +IYA L
Sbjct: 611 SSIEVDGIVHEFLVGDNSHPSAKKIYAKL 639



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 153/284 (53%), Gaps = 16/284 (5%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAIIAAA 251
           A ++F ++PH N+ +WN +I  Y+ +    +++ +F+ ML +    P+  T P  I AA+
Sbjct: 88  AQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAAS 147

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            +  L  GK+FH   +K L   DVF+ NSLI FYAKCG +     VF  +  R++V+WN+
Sbjct: 148 ELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNS 207

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAK 368
           +I  + Q G  EEA+E F+ M    ++PNG+T++G+L AC      E G   +SY  + +
Sbjct: 208 MITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR 267

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
           + +   L       M+D+ ++ G  ++AK     +P +  I  W  +L G       ++G
Sbjct: 268 IGESLTLS----NAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVG-----YAKIG 317

Query: 429 EF-AARRIL-ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
           E+ AA+ I  A+  +D++++  L +A    GK      +  E++
Sbjct: 318 EYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQ 361



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 182/397 (45%), Gaps = 68/397 (17%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTFGSVIPSSTA 120
            QVFD++P  N+ +  T+I  +A   +  +++ +F RML  +   P +FTF  +I +++ 
Sbjct: 89  QQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           LE+L  GK  H    KV L S+VF+ ++++  Y K   +    RVF +    +VVS+ +M
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSM 208

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I   ++    E+AL+LFQEM  +NV                                PN 
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQNV-------------------------------KPNG 237

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A A  +    G+  H+   +      + + N+++  Y KCGS+ED+  +FDK
Sbjct: 238 ITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDK 297

Query: 301 LTERNIVT-------------------------------WNAVICGYAQNGRGEEAIEFF 329
           + E++IV+                               WNA+I  Y Q G+ +EA+E F
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELF 357

Query: 330 ERMRINGI-RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLL 387
             ++++   +P+ VTL+  L AC   G ++ G   +    ++  GM L       ++D+ 
Sbjct: 358 HELQLSKTAKPDEVTLVSTLSACAQLGAMDLG--GWIHVYIKKQGMKLNCHLTTSLIDMY 415

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            + G  ++A    + +     +  W A++ G  +H +
Sbjct: 416 CKCGDLQKALMVFHSVE-RKDVFVWSAMIAGLAMHGH 451



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 6/197 (3%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTFGSVI 115
           ++ +   +FD +P+ ++ +   +I  + +    +EA+ LF  + L    +P E T  S +
Sbjct: 318 EYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTL 377

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            +   L  ++LG  +H +  K G++ N  + ++++D+Y K   +++A  VF      +V 
Sbjct: 378 SACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVF 437

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            ++ MI GL      +DA+ LF +M       N V++  ++   S  G  EE    F +M
Sbjct: 438 VWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM 497

Query: 232 -LREGLVPNHSTLPCAI 247
            L  G++P      C +
Sbjct: 498 ELVYGVLPGVKHYACMV 514


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 167/427 (39%), Positives = 256/427 (59%)

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150
           +AI LF R+   ++ P  FT  SV+ +   L DL+ G+ LH    KVG +SN+++ + I+
Sbjct: 111 DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIV 170

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
            LY     + EA  +FE     +VV++  MI  L+K+   E A  LF  MP RNV SW +
Sbjct: 171 HLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTS 230

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           MI GY Q G+ +EA++LF +M   G+  N  T+   + A A++ AL +G   H  + +  
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 290

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            K +V + N+LI  Y KCG +E++  VF+++ ER +V+W+A+I G A +GR EEA+  F 
Sbjct: 291 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 350

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            M   GI PNGVT +GLL AC+H GL+ +G  +F+    +   + + EHY CMVDLLSR+
Sbjct: 351 DMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRA 410

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450
           G   EA EF+ ++P  P    W ALLG C++H NVE+ E A + +L LDP +   YV+LS
Sbjct: 411 GLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLS 470

Query: 451 NALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           N  + AG+W++ + +R+ MK++ + + PG S I +   VH FV G+ +H   ++I+    
Sbjct: 471 NIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWE 530

Query: 511 SCTEQIR 517
              E++R
Sbjct: 531 ELLEEMR 537



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 153/336 (45%), Gaps = 52/336 (15%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           + +F  +P+ NV S T++I  + +    +EAI+LF++M    ++ +E T  +V+ +   L
Sbjct: 214 YDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADL 273

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L+LG ++H ++ + G + NV + + ++D+Y+K   +EEA +VFE+     VVS++ MI
Sbjct: 274 GALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMI 333

Query: 182 CGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GL 236
            GL    R E+AL+LF +M       N V++  ++   S  G   E    F  M R+ G+
Sbjct: 334 GGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGI 393

Query: 237 VP--------------------------NHSTLPCAIIAAANIAALGMGKSFHAC--AVK 268
           +P                          N    P  ++  A + A  + K+      A+K
Sbjct: 394 IPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIK 453

Query: 269 FLGKLDVFVGNSLI---SFYAKCGSMEDSLLVFDKLTERNIVT---WNAV---------I 313
            L +LD       +   + YA+ G  ED+  V   + +R +     W+++         +
Sbjct: 454 HLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFV 513

Query: 314 CGYAQNGRGEEAI----EFFERMRINGIRPNGVTLL 345
            G   +   E+      E  E MR+ G  PN   +L
Sbjct: 514 AGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 549



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 131/286 (45%), Gaps = 42/286 (14%)

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           WN+ +   ++     +A+ LF  + +  + P+  T    + A  N+  L  G+  H    
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN----------------- 310
           K   + ++++ N ++  YA CG M ++ L+F+K+ +R++VTWN                 
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 311 --------------AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
                         ++I GY Q G+ +EAI  F +M   G++ N VT++ +L AC   G 
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 357 VEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           ++ G   + Y ++   +    +       ++D+  + G  +EA +   ++  +  +  W 
Sbjct: 276 LDLGMRIHEYSNRHGFKRNVRIS----NTLIDMYVKCGCLEEACKVFEEME-ERTVVSWS 330

Query: 414 ALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           A++GG  +H   E  L  F+    + ++P  V +++ L +A S  G
Sbjct: 331 AMIGGLAMHGRAEEALRLFSDMSQVGIEPNGV-TFIGLLHACSHMG 375


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 175/472 (37%), Positives = 273/472 (57%), Gaps = 42/472 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D      ++FDE+P  ++V+ T +I  F++ +   +A+ LF +ML L ++P+ FT
Sbjct: 136 CGCLDD----ARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFT 191

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             S++ +S +   L+ G QLHA+  K G QS+V+VGSA++D+Y +               
Sbjct: 192 LSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYAR--------------- 236

Query: 171 NPNVVSYTTMICGLLKRERFEDALKL-FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                      CG +      DA +L F  MP ++ VSWNA+I G+++ G  E A++L  
Sbjct: 237 -----------CGHM------DAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLW 279

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M R+   P H T      A A+I AL  GK  HA  +K   KL  F+GN+L+  YAK G
Sbjct: 280 KMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAG 339

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           S++D+  VFD+L + ++V+WN ++ G AQ+G G+E ++ FE+M   GI PN ++ L +L 
Sbjct: 340 SIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLT 399

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           AC+H+GL+++G  YF   +L     ++P+  HY   VDLL R G    A+ F+ ++P +P
Sbjct: 400 ACSHSGLLDEGLYYF---ELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEP 456

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W ALLG C++H N+ELG +AA R   LDP D    ++LSN  + AG+W +V+ +R+
Sbjct: 457 TAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRK 516

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            MKE G+ + P CSW+EI++ VH+FV  D  H    EI       + +I+E 
Sbjct: 517 MMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEI 568


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 175/471 (37%), Positives = 273/471 (57%), Gaps = 42/471 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D      ++FDE+P  ++V+ T +I  F++ +   +A+ LF +ML L  +P+ FT
Sbjct: 136 CGCLDD----ARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFT 191

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             S++ +S +   L+ G QLHA+  K G QS+V+VGSA++D+Y +               
Sbjct: 192 LSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYAR--------------- 236

Query: 171 NPNVVSYTTMICGLLKRERFEDALKL-FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                      CG +      DA +L F  MP ++ VSWNA+I G+++ G  E A++L  
Sbjct: 237 -----------CGHM------DAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLW 279

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M R+   P H T    + A A+I AL  GK  HA  +K   KL  F+GN+L+  YAK G
Sbjct: 280 KMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAG 339

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           S++D+  VFD+L + ++V+WN ++ G AQ+G G+E ++ FE+M   GI PN ++ L +L 
Sbjct: 340 SIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLT 399

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           AC+H+GL+++G  YF   +L     ++P+  HY   VDLL R G    A+ F+ ++P +P
Sbjct: 400 ACSHSGLLDEGLYYF---ELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEP 456

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W ALLG C++H N+ELG +AA R   LDP D    ++LSN  + AG+W +V+ +R+
Sbjct: 457 TAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRK 516

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            MKE G+ + P CSW+EI++ VH+FV  D  H    EI       + +I+E
Sbjct: 517 MMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKE 567


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 172/473 (36%), Positives = 274/473 (57%), Gaps = 4/473 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPS 107
           VS  +   +      +F+ +PD ++VS   +I  + +     +A+ LFSRML   ++ P 
Sbjct: 131 VSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPD 190

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           EFT  SV+ +   L ++ +GKQ+HA+  +  +  N  V +A++  Y K  S+E A R+ +
Sbjct: 191 EFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMD 250

Query: 168 DTHNP--NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
            +     NV+S+T ++ G +K    E A ++F  M +R+VV+W AMI GY Q GRN+EA+
Sbjct: 251 QSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAI 310

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           +LF  M+  G  PN  TL   +   A++A L  GK  H  A++ L +    V N++I+ Y
Sbjct: 311 DLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMY 370

Query: 286 AKCGSMEDSLLVFDKLTERN-IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           A+ GS   +  +FD++  R   +TW ++I   AQ+G+GEEA+  FE M   G+ P+ +T 
Sbjct: 371 ARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITY 430

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +G+L AC+H G V +G  Y+ Q K E     +  HYACMVDLL+R+G F EA+EF+  +P
Sbjct: 431 VGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 490

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
            +P    W +LL  C++H N EL E AA ++L++DP +  +Y  ++N  S  G+W + + 
Sbjct: 491 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 550

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           I +  KEK + +  G SW  I+SK+HVF   D  H   D +YA+     E+I+
Sbjct: 551 IWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIK 603



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 210/444 (47%), Gaps = 44/444 (9%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S + +    VF E+P+ + VS T ++    +   + EAI     M      P++FT  
Sbjct: 3   AKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLT 62

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ S    +   +G+++H++  K+GL S V V +++L++Y K    E AT VFE     
Sbjct: 63  NVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVR 122

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +V S+  M+       R + A  LF+ MP R++VSWNAMI GY+Q G + +A+ LF  ML
Sbjct: 123 SVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRML 182

Query: 233 RE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            E  + P+  T+   + A AN+  + +GK  HA  ++     +  V N+LIS YAK GS+
Sbjct: 183 HESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSV 242

Query: 292 EDSLLVFDKLTE---------------------------------RNIVTWNAVICGYAQ 318
           E++  + D+  E                                 R++V W A+I GY Q
Sbjct: 243 ENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQ 302

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA---KLEDPGML 375
           NGR +EAI+ F  M   G  PN  TL  +L  C     ++ G     +A    LE    +
Sbjct: 303 NGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSV 362

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAAR 433
                  ++ + +RSG F  A+     + +      W +++     H   E  +G F   
Sbjct: 363 SN----AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 418

Query: 434 RILALDPEDVSSYVMLSNALSVAG 457
               ++P+ + +YV + +A S AG
Sbjct: 419 LRAGVEPDRI-TYVGVLSACSHAG 441



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 148/357 (41%), Gaps = 80/357 (22%)

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
           ++ K   + +A  VF +    + VS+T M+ GL                           
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGL--------------------------- 33

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-L 270
               ++ GR  EA+   ++M  +G  P   TL   + + A   A  +G+  H+  VK  L
Sbjct: 34  ----NRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGL 89

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDK------------------------------ 300
           G   V V NS+++ Y KCG  E +  VF++                              
Sbjct: 90  GSC-VPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFE 148

Query: 301 -LTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVE 358
            + +R+IV+WNA+I GY QNG   +A++ F RM   + + P+  T+  +L AC + G V 
Sbjct: 149 SMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVR 208

Query: 359 KG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL-YDLPFDPGIGFWKA 414
            G   ++Y  + ++        +    ++   ++SG  + A+  +   +  D  +  + A
Sbjct: 209 IGKQVHAYILRTEMA----YNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTA 264

Query: 415 LLGGCQIHSNVELGEFAARRIL--ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
           LL G      V++G+  + R +   ++  DV ++  +       G+ D   ++ R M
Sbjct: 265 LLEG-----YVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 316


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 179/489 (36%), Positives = 280/489 (57%), Gaps = 8/489 (1%)

Query: 38  KLETPAIRTDS--VSCGSESDKFSSVHQVFDEVPDL----NVVSATTIIGRFAKQHHYEE 91
           KL  P + T S  +S  +   +     ++F +  DL    N+VS   +I  F +   Y +
Sbjct: 134 KLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLD 193

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           A+ +F  M L  ++P   +  SV+P+   L+   +G Q+H +  K GL  + FV SA++D
Sbjct: 194 AVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALID 253

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP--HRNVVSWN 209
           +Y K +   E + VF +    +V +   ++ GL +    ++AL++F++      NVVSW 
Sbjct: 254 MYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWT 313

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
           +MI   SQ G++ EA+ LF EM  EG+ PN  T+PC + A  NIAAL  GK+ H  +++ 
Sbjct: 314 SMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRN 373

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
               DV+VG++LI  YAKCG M  S L FD +  RN+V+WN+++ GYA +G+  EAI  F
Sbjct: 374 GIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIF 433

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
           E M+  G +P+ V+   +L AC   GL E+G+ YF           + EHY+CMV LL R
Sbjct: 434 ELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGR 493

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML 449
           SGR +EA   +  +PF+P    W ALL  C++H+ V+LGE AA+R+  L+P +  +Y++L
Sbjct: 494 SGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILL 553

Query: 450 SNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           SN  +    W  V  +R  M+ +G+ + PG SWIEIK+KVH+ + GD +H    +I   L
Sbjct: 554 SNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKL 613

Query: 510 RSCTEQIRE 518
              T ++++
Sbjct: 614 AKLTVEMKK 622



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 197/419 (47%), Gaps = 47/419 (11%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           +S    I  F+K +H+   I +FS ML   I P      +VI +  AL  L  GKQ+H +
Sbjct: 40  ISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCF 99

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
           A   GL  +  V S++L +Y++   +++A  VF+    P VV+ + +I    ++ R ++ 
Sbjct: 100 ALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKET 159

Query: 194 LKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            +LF +        N+VSWN MI G++++G   +AV +F  M  EGL P+ +++   + A
Sbjct: 160 KELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPA 219

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC--------------------- 288
             ++    MG   H   +K     D FV ++LI  Y KC                     
Sbjct: 220 VGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGAC 279

Query: 289 ----------GSMEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
                     G ++++L VF +    + N+V+W ++I   +QNG+  EA+E F  M+I G
Sbjct: 280 NALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEG 339

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSY--FSQAKLEDPGMLKPEHY-ACMVDLLSRSGRF 393
           ++PN VT+  LL AC +   +  G +   FS       G+    +  + ++D+ ++ GR 
Sbjct: 340 VKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRN----GIFNDVYVGSALIDMYAKCGRM 395

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAARRILALDPEDVSSYVMLS 450
             A    +D+  +  +  W +L+ G  +H      +  F   +     P+ VS   +LS
Sbjct: 396 L-ASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLS 453


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 166/455 (36%), Positives = 273/455 (60%), Gaps = 8/455 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FD +P  +V+S  T+I  +A+     +A  LF+   + ++    FT+ +++   +   
Sbjct: 222 QLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDV----FTWTAMV---SGYV 274

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
              +  +   +  ++ +++ +   +A+L  Y++   +  A  +FE     N+ S+ TMI 
Sbjct: 275 QNGMVDEARKYFDEMPVKNEISY-NAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMIT 333

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G  +      A KLF  MP R+ VSW A+I GY+Q G  EEA+N+F+EM R+G   N ST
Sbjct: 334 GYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRST 393

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
             CA+   A+IAAL +GK  H   VK   +   FVGN+L+  Y KCGS +++  VF+ + 
Sbjct: 394 FSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE 453

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+++V+WN +I GYA++G G +A+  FE M+  G++P+ +T++G+L AC+H+GL+++G  
Sbjct: 454 EKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTE 513

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF     +       +HY CM+DLL R+GR +EA+  + ++PFDPG   W ALLG  +IH
Sbjct: 514 YFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIH 573

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N ELGE AA  +  ++P++   YV+LSN  + +G+W +V  +R +M+E G+ +V G SW
Sbjct: 574 GNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSW 633

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +E+++K+H F  GD  H   D IYA L     ++R
Sbjct: 634 VEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMR 668



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 91/194 (46%), Gaps = 5/194 (2%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +   ++FD +P  + VS   II  +A+  HYEEA+ +F  M       +  TF   + + 
Sbjct: 342 AQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTC 401

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             +  L LGKQ+H    K G ++  FVG+A+L +Y K  S +EA  VFE     +VVS+ 
Sbjct: 402 ADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWN 461

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           TMI G  +      AL LF+ M    V    ++   ++   S +G  +     F  M R+
Sbjct: 462 TMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRD 521

Query: 235 -GLVPNHSTLPCAI 247
             + P      C I
Sbjct: 522 YNVKPTSKHYTCMI 535



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 151/335 (45%), Gaps = 37/335 (11%)

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           +A++  Y++ +    A  +F+     ++ S+  M+ G ++  R  +A KLF  MP ++VV
Sbjct: 81  NAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVV 140

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           SWNAM+ GY+Q G  +EA  +F +M      P+ +++    + AA +         H   
Sbjct: 141 SWNAMLSGYAQNGFVDEAREVFNKM------PHRNSISWNGLLAAYV---------HNGR 185

Query: 267 VKFLGKL-------DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           +K   +L       ++   N L+  Y K   + D+  +FD++  R++++WN +I GYAQ 
Sbjct: 186 LKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQV 245

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
           G   +A   F    I  +     T   ++      G+V++   YF +  +++        
Sbjct: 246 GDLSQAKRLFNESPIRDV----FTWTAMVSGYVQNGMVDEARKYFDEMPVKN-----EIS 296

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
           Y  M+    +  +   A E    +P    I  W  ++ G   +  +      AR++  + 
Sbjct: 297 YNAMLAGYVQYKKMVIAGELFEAMPC-RNISSWNTMITGYGQNGGIA----QARKLFDMM 351

Query: 440 PE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           P+ D  S+  + +  +  G ++   N+  EMK  G
Sbjct: 352 PQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG 386



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/409 (20%), Positives = 170/409 (41%), Gaps = 48/409 (11%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRT--DSVSCGSESDKFSSVHQ 63
           C+C ++   +K    +S +P         S  K + P I T   ++S    +    S  +
Sbjct: 17  CLCTNNYYRSKRRSTNSYSP---------SSVKFKDPDIVTWNKAISSHMRNGHCDSALR 67

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGSVIPSS 118
           VF+ +P  + VS   +I  + +   +  A  LF +M        N+  + +     +  +
Sbjct: 68  VFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEA 127

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L DL   K + +W             +A+L  Y +   ++EA  VF    + N +S+ 
Sbjct: 128 HKLFDLMPKKDVVSW-------------NAMLSGYAQNGFVDEAREVFNKMPHRNSISWN 174

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
            ++   +   R ++A +LF+   +  ++SWN ++GGY +     +A  LF  M    ++ 
Sbjct: 175 GLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVI- 233

Query: 239 NHSTLPCAIIAAANIAALGMGKS-FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
              +    I   A +  L   K  F+   ++     DVF   +++S Y + G ++++   
Sbjct: 234 ---SWNTMISGYAQVGDLSQAKRLFNESPIR-----DVFTWTAMVSGYVQNGMVDEARKY 285

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD++  +N +++NA++ GY Q  +   A E FE M    I      + G        G +
Sbjct: 286 FDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGY----GQNGGI 341

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            +    F      D        +A ++   +++G ++EA     ++  D
Sbjct: 342 AQARKLFDMMPQRD-----CVSWAAIISGYAQNGHYEEALNMFVEMKRD 385


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 163/445 (36%), Positives = 270/445 (60%), Gaps = 42/445 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++P+ NVVS TT+I  ++     + A+ L + M    + P+ FTF SV+ +   L D
Sbjct: 342 LFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYD 401

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L   KQLH+W  KVGL+S+VFV SA++D+Y K+  + EA                     
Sbjct: 402 L---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEA--------------------- 437

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                     LK+F+EM   + V WN++I  ++Q    +EA++L+  M R G   + STL
Sbjct: 438 ----------LKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTL 487

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A  +++ L +G+  H   +KF    D+ + N+L+  Y KCGS+ED+  +F+++ +
Sbjct: 488 TSVLRACTSLSLLELGRQAHVHVLKF--DQDLILNNALLDMYCKCGSLEDAKFIFNRMAK 545

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++W+ +I G AQNG   EA+  FE M++ G +PN +T+LG+L+AC+H GLV +G+ Y
Sbjct: 546 KDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYY 605

Query: 364 F-SQAKLE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F S   L   DPG    EHY CM+DLL R+ +  +  + ++++  +P +  W+ LL  C+
Sbjct: 606 FRSMNNLYGIDPGR---EHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACR 662

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
              NV+L  +AA+ IL LDP+D  +YV+LSN  +++ +W++V+ +RR MK++G+ + PGC
Sbjct: 663 ARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGC 722

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEI 505
           SWIE+  ++H F+ GD++H   DEI
Sbjct: 723 SWIEVNKQIHAFILGDKSHPQIDEI 747



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 141/286 (49%), Gaps = 13/286 (4%)

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRV----FEDTHNPNVVSYTTMICGLLKRERFEDA 193
           G+ ++    S ++   +   ++ E  RV    F + ++P       +I   +K    E+A
Sbjct: 280 GVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEA 339

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             LF +MP RNVVSW  MI  YS    N+ A+ L   M R+G++PN  T    + A   +
Sbjct: 340 QVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERL 399

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
             L   K  H+  +K   + DVFV ++LI  Y+K G + ++L VF ++   + V WN++I
Sbjct: 400 YDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSII 456

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-YSYFSQAKLEDP 372
             +AQ+  G+EA+  ++ MR  G   +  TL  +L AC    L+E G  ++    K +  
Sbjct: 457 AAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQD 516

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            +L       ++D+  + G  ++AK F+++      +  W  ++ G
Sbjct: 517 LILN----NALLDMYCKCGSLEDAK-FIFNRMAKKDVISWSTMIAG 557



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 138/338 (40%), Gaps = 76/338 (22%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           M     + R+   L  L +LHS      +E+            +R+  +   S+  +   
Sbjct: 386 MFTFSSVLRACERLYDLKQLHSWIMKVGLESD---------VFVRSALIDVYSKMGELLE 436

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             +VF E+   + V   +II  FA+    +EA++L+  M  +     + T  SV+ + T+
Sbjct: 437 ALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTS 496

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L  L LG+Q H    K     ++ + +A+LD+Y K  S+E+A  +F      +V+S++TM
Sbjct: 497 LSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTM 554

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I GL                               +Q G + EA+NLF  M  +G  PNH
Sbjct: 555 IAGL-------------------------------AQNGFSMEALNLFESMKVQGPKPNH 583

Query: 241 STLPCAIIAAA----------------NIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
            T+   + A +                N+  +  G+  + C +  LG+ +          
Sbjct: 584 ITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAE---------- 633

Query: 285 YAKCGSMEDSL-LVFDKLTERNIVTWNAVI--CGYAQN 319
                 ++D + L+ +   E ++VTW  ++  C   QN
Sbjct: 634 -----KLDDMVKLIHEMNCEPDVVTWRTLLDACRARQN 666


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 264/448 (58%), Gaps = 33/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F+ + D + ++ TT++  F +     +A+  F RM    I   ++TFGS++ +  AL 
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GKQ+HA+  +     NVFVGSA++D+Y K  SI+ A   F                
Sbjct: 287 ALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAF---------------- 330

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                          + M  +N++SW A+I GY Q G +EEAV +F EM R+G+ P+  T
Sbjct: 331 ---------------RRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFT 375

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I + AN+A+L  G  FH  A+       + V N+L++ Y KCGS+ED+  +FD++ 
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEML 435

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             + V+W A++ GYAQ GR +E I+ FE+M    ++P+GVT +G+L AC+  G VEKG S
Sbjct: 436 FHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCS 495

Query: 363 YFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF   + +D G++   +HY CM+DL SRSGR KEA+EF+  +P  P    W  LL  C++
Sbjct: 496 YFHSMQ-KDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRL 554

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
             ++E+G++AA  +L +DP++ +SYV+L +  +  G W+ V+ +RR M+++ + + PGCS
Sbjct: 555 RGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCS 614

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           WI+ K+KVH+F   D++H  +  IY  L
Sbjct: 615 WIKYKNKVHIFSADDQSHPFSKGIYEKL 642



 Score =  204 bits (519), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 197/361 (54%), Gaps = 12/361 (3%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL--NIRPSEFTFGSVIPSSTAL 121
           +F  +   + VS   +I  F+    +  A+ L+  +L    ++RPS  T  +++ +++AL
Sbjct: 94  LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASAL 153

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D  LG+Q H    ++G   N FVGS ++ +Y K+  I +A RVF++    NVV Y TMI
Sbjct: 154 GDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMI 213

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            GLL+ +  E+A +LF+ M  R+ ++W  M+ G++Q G   +A+N F  M  +G+  +  
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQY 273

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A   ++AL  GK  HA  ++     +VFVG++L+  Y+KC S++ +   F ++
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRM 333

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           + +NI++W A+I GY QNG  EEA+  F  M+ +GI P+  TL  ++ +C +   +E+G 
Sbjct: 334 SCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGA 393

Query: 362 SYFSQAKLEDPGMLKPEHYA----CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            +   A +   G++   HY      +V L  + G  ++A     ++ F   +  W AL+ 
Sbjct: 394 QFHCLALVS--GLM---HYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVS-WTALVT 447

Query: 418 G 418
           G
Sbjct: 448 G 448



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 163/350 (46%), Gaps = 51/350 (14%)

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           +L  Y K      A RVF+ T +PN+ +Y  ++  L      +D   LF  M  R+ VS+
Sbjct: 47  LLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSY 106

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREG--LVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           NA+I G+S  G +  AV L+  +LR G  + P+  T+   ++AA+ +    +G+ FH C 
Sbjct: 107 NAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFH-CQ 165

Query: 267 VKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDK------------------------- 300
           +  LG  ++ FVG+ L+  YAK G + D+  VFD+                         
Sbjct: 166 ILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEA 225

Query: 301 ------LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
                 +T+R+ +TW  ++ G+ QNG   +A+ FF RMR  GI  +  T   +L AC   
Sbjct: 226 RRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGAL 285

Query: 355 GLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
             +E+G   ++Y  +   +D   +     + +VD+ S+    K A+     +     I  
Sbjct: 286 SALEQGKQIHAYIIRTHYDDNVFVG----SALVDMYSKCRSIKPAETAFRRMSCKNIIS- 340

Query: 412 WKALL-----GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
           W AL+      GC   S   +  F+  +   +DP+D +   ++S+  ++A
Sbjct: 341 WTALIVGYGQNGC---SEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLA 387



 Score = 42.0 bits (97), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D     H++FDE+   + VS T ++  +A+    +E I LF +ML  +++P   T
Sbjct: 421 CGSIED----AHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVT 476

Query: 111 FGSVIPSSTALEDLNLG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           F  V+ + +    +  G    H+     G+       + ++DLY +   ++EA    +  
Sbjct: 477 FIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQM 536

Query: 170 -HNPNVVSYTTMICGLLKRERFE 191
             +P+ + + T++     R   E
Sbjct: 537 PMHPDAIGWGTLLSACRLRGDME 559


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 265/466 (56%), Gaps = 37/466 (7%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ES    S+ +VF+ +P  ++VS  T+I   A+   +E+A+ +   M   ++RP  FT  S
Sbjct: 182 ESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSS 241

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+P      +L  GK++H +A + G  ++VF+GS+++D+Y K +                
Sbjct: 242 VLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCT---------------- 285

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                          R +D+ ++F  +P  + +SWN++I G  Q G  +E +  F +ML 
Sbjct: 286 ---------------RVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLI 330

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             + PNH +    + A A++  L +GK  H   ++     +VF+ ++L+  YAKCG++  
Sbjct: 331 AKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRT 390

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +FDK+   ++V+W A+I GYA +G   +AI  F+RM + G++PN V  + +L AC+H
Sbjct: 391 ARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSH 450

Query: 354 TGLVEKGYSYFSQAKLED---PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            GLV++ + YF+    +    PG+   EHYA + DLL R GR +EA EF+ D+  +P   
Sbjct: 451 AGLVDEAWKYFNSMTQDYRIIPGL---EHYAAVADLLGRVGRLEEAYEFISDMHIEPTGS 507

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W  LL  C++H N+EL E  ++++  +DP+++ +YV+LSN  S AG+W +   +R  M+
Sbjct: 508 VWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMR 567

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           +KGM + P CSWIEIK+KVH FV GD++H   D I   L+   EQ+
Sbjct: 568 DKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQM 613



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 217/435 (49%), Gaps = 28/435 (6%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSA-TTIIGRFAKQHHYEEAIYLFS 97
           L +P++ +  +S  S  +       +F+ +P      A  +II  +     +  ++  F 
Sbjct: 36  LPSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFI 95

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
           +ML     P    F SV+ S T ++DL  G+ +H    ++G+  +++  +A++++Y K  
Sbjct: 96  QMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFW 155

Query: 158 SIEEAT---RVFEDTHNPNVVSYTTMICGLLKRERFEDAL----KLFQEMPHRNVVSWNA 210
           S+EE     +VF++    +V S         K+E+    L    K+F+ MP R++VSWN 
Sbjct: 156 SLEEVNTYKKVFDEGKTSDVYS---------KKEKESYYLGSLRKVFEMMPKRDIVSWNT 206

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           +I G +Q G +E+A+ +  EM    L P+  TL   +   A    L  GK  H  A++  
Sbjct: 207 VISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNG 266

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
              DVF+G+SLI  YAKC  ++DS  VF  L + + ++WN++I G  QNG  +E ++FF+
Sbjct: 267 YDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQ 326

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLL 387
           +M I  I+PN V+   ++ AC H   +  G   + Y  +++ +    +     + +VD+ 
Sbjct: 327 QMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA----SALVDMY 382

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAARRILALDPEDVSS 445
           ++ G  + A+ +++D      +  W A++ G  +H +    +  F    +  + P  V+ 
Sbjct: 383 AKCGNIRTAR-WIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAF 441

Query: 446 YVMLSNALSVAGKWD 460
             +L+ A S AG  D
Sbjct: 442 MAVLT-ACSHAGLVD 455


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 175/470 (37%), Positives = 260/470 (55%), Gaps = 40/470 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+ SD       VFD +P  +VVS T +I  +A+     EA+ L   ML    RPS FT
Sbjct: 110 CGAVSD----ARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFT 165

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F S + ++ A     +G+Q+HA A K  L  +V+VGSA+LD+Y +   ++ A RVF+   
Sbjct: 166 FTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFD--- 222

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        +  +N VSWNA+I G+++ G  E  +  F E
Sbjct: 223 ----------------------------WLDSKNEVSWNALIAGFARKGDGETTLMKFAE 254

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M R G    H T      A A I AL  G+  HA  +K   KL  FV N+++  YAK GS
Sbjct: 255 MQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGS 314

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M D+  VFD++ +R++VTWN ++  +AQ G G+EA+  FE +R  GI+ N +T L +L A
Sbjct: 315 MVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTA 374

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C+H GLV++G  YF   K  +   ++PE  HY   VDLL R+G  KEA  F++ +P +P 
Sbjct: 375 CSHGGLVKEGKQYFDMMKDYN---VEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPT 431

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W ALLG C++H N ++G++AA  +  LDPED    V+L N  +  G+WD+ + +R+ 
Sbjct: 432 AAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKM 491

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           MK  G+ + P CSW+EI++ VH+FV  D  H  ++EIY +      +I++
Sbjct: 492 MKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKK 541



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 124/262 (47%), Gaps = 31/262 (11%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           +L   + P+   + S+I +    ++L   + +H+  ++  L  + F+ ++++ +Y K  +
Sbjct: 53  LLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGA 112

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           + +A  VF+     +VVS+T +I                                GY+Q 
Sbjct: 113 VSDARHVFDGIPTRDVVSWTYLIT-------------------------------GYAQN 141

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
               EA+ L  +MLR    P+  T    + AA      G+G+  HA AVK+    DV+VG
Sbjct: 142 DMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVG 201

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           ++L+  YA+C  M+ ++ VFD L  +N V+WNA+I G+A+ G GE  +  F  M+ NG  
Sbjct: 202 SALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFG 261

Query: 339 PNGVTLLGLLWACNHTGLVEKG 360
               T   +  A    G +E+G
Sbjct: 262 ATHFTYSSVFSALARIGALEQG 283



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 229 IEMLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           +++L  G L P        I A A    L   ++ H+   +     D F+ NSLI  Y K
Sbjct: 50  LDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCK 109

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG++ D+  VFD +  R++V+W  +I GYAQN    EA+     M     RP+G T    
Sbjct: 110 CGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSF 169

Query: 348 L---WACNHTGLVEKGYSYFSQAKLED 371
           L    AC   G+ E+ ++   +  L++
Sbjct: 170 LKAAGACGGRGIGEQMHALAVKYNLDE 196


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 272/461 (59%), Gaps = 38/461 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL- 121
           ++FDE+   +VV+ T +I  +++    ++A+ L   ML + ++P++FT  S++ +++ + 
Sbjct: 71  KLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVG 130

Query: 122 -EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
             D+  G+QLH    + G  SNV+V  AILD+Y +   +EEA  +F+             
Sbjct: 131 STDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFD------------- 177

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                              M  +N VSWNA+I GY++ G+ ++A  LF  MLRE + P H
Sbjct: 178 ------------------VMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTH 219

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T    + A A++ +L  GK  HA  +K+  KL  FVGN+L+  YAK GS+ED+  VFD+
Sbjct: 220 FTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDR 279

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           L +R++V+WN+++ GY+Q+G G+ A++ FE M    I PN +T L +L AC+H GL+++G
Sbjct: 280 LAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEG 339

Query: 361 YSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             YF   K  +   ++P+  HY  MVDLL R+G    A +F+ ++P  P    W ALLG 
Sbjct: 340 RHYFDMMKKYN---VEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGA 396

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C++H N+ELG +AA  I  LD     ++V+L N  ++AG+W++ + +R+ MKE G+ + P
Sbjct: 397 CRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEP 456

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            CSW+E++++VHVFV  D  H    EI+ +    +++I+E 
Sbjct: 457 ACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEI 497



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 171/352 (48%), Gaps = 38/352 (10%)

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++   T L  LN GK +HA       + ++ + + +L+LY K                 
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAK----------------- 62

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG L   R     KLF EM  R+VV+W A+I GYSQ  R ++A+ L  EML
Sbjct: 63  ---------CGDLVYAR-----KLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEML 108

Query: 233 REGLVPNHSTLPCAIIAAANIAALGM--GKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           R GL PN  TL   + AA+ + +  +  G+  H   +++    +V+V  +++  YA+C  
Sbjct: 109 RIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHH 168

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E++ L+FD +  +N V+WNA+I GYA+ G+G++A   F  M    ++P   T   +L A
Sbjct: 169 LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C   G +E+G  +     ++    L       ++D+ ++SG  ++AK+ ++D      + 
Sbjct: 229 CASMGSLEQG-KWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKK-VFDRLAKRDVV 286

Query: 411 FWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
            W ++L G   H    V L  F       + P D++   +L+ A S AG  D
Sbjct: 287 SWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLT-ACSHAGLLD 337


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  330 bits (847), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 285/471 (60%), Gaps = 9/471 (1%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           SCG       S  +VF  + + +VVS  ++I  F ++   ++A+ LF +M   +++ S  
Sbjct: 180 SCGD----LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHV 235

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T   V+ +   + DL  G+++ ++  +  +  N+ + +A+LD+Y K  SIE+A R+F+  
Sbjct: 236 TMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 295

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              + V++TTM+ G    E +E A ++   MP +++V+WNA+I  Y Q G+  EA+ +F 
Sbjct: 296 EEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFH 355

Query: 230 EM-LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           E+ L++ +  N  TL   + A A + AL +G+  H+   K   K++ +V ++LI  Y+KC
Sbjct: 356 ELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKC 415

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +E +  VF+ + +R++  W+A+I G A +G G EA++ F +M+   ++PNGVT   + 
Sbjct: 416 GDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVF 475

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            AC+HTGLV++  S F   K+E    + PE  HYAC+VD+L RSG  ++A +F+  +P  
Sbjct: 476 CACSHTGLVDEAESLF--YKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIP 533

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W ALLG C+IH+N+ L E A  R+L L+P +  ++V+LSN  + +GKWDNVS +R
Sbjct: 534 PSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELR 593

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + M+  G+ + PGCS IEI   +H F++GD  H M++++Y  L    E+++
Sbjct: 594 KHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK 644



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 152/302 (50%), Gaps = 18/302 (5%)

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
           T +F D   P   S    I  L      E A K+F E+P  N  +WN +I  Y+      
Sbjct: 57  TGMFSD---PYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPV 113

Query: 223 EAVNLFIEML--REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            ++  F++M+       PN  T P  I AAA +++L +G+S H  A+K     DVFV NS
Sbjct: 114 CSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANS 173

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI  Y  CG ++ +  VF  + E+++V+WN++I G+ Q G  ++A+E F++M    ++ +
Sbjct: 174 LIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKAS 233

Query: 341 GVTLLGLLWACNHTGLVEKGY---SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            VT++G+L AC     +E G    SY  + ++     L       M+D+ ++ G  ++AK
Sbjct: 234 HVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLA----NAMLDMYTKCGSIEDAK 289

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL-ALDPEDVSSYVMLSNALSVA 456
             L+D   +     W  +L G  I  + E    AAR +L A+  +D+ ++  L +A    
Sbjct: 290 R-LFDAMEEKDNVTWTTMLDGYAISEDYE----AAREVLNAMPKKDIVAWNALISAYEQN 344

Query: 457 GK 458
           GK
Sbjct: 345 GK 346



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 181/396 (45%), Gaps = 71/396 (17%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR--PSEFTFGSVIPSSTA 120
           +VFDE+P  N  +  T+I  +A       +I+ F  M+    +  P+++TF  +I ++  
Sbjct: 86  KVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAE 145

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           +  L+LG+ LH  A K  + S+VFV ++++  Y     ++ A +VF      +VVS+ +M
Sbjct: 146 VSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSM 205

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G +++   + AL+LF++M   +V +                               +H
Sbjct: 206 INGFVQKGSPDKALELFKKMESEDVKA-------------------------------SH 234

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A A I  L  G+   +   +    +++ + N+++  Y KCGS+ED+  +FD 
Sbjct: 235 VTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDA 294

Query: 301 LTE-------------------------------RNIVTWNAVICGYAQNGRGEEAIEFF 329
           + E                               ++IV WNA+I  Y QNG+  EA+  F
Sbjct: 295 MEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVF 354

Query: 330 ERMRIN-GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDL 386
             +++   I+ N +TL+  L AC   G +E G    S  K      +K   Y  + ++ +
Sbjct: 355 HELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIK---KNGIKMNFYVTSALIHM 411

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            S+ G  ++A+E +++      +  W A++GG  +H
Sbjct: 412 YSKCGDLEKARE-VFNSVEKRDVFVWSAMIGGLAMH 446


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 172/473 (36%), Positives = 274/473 (57%), Gaps = 4/473 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPS 107
           VS  +   +      +F+ +PD ++VS   +I  + +     +A+ LFSRML   ++ P 
Sbjct: 237 VSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPD 296

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           EFT  SV+ +   L ++ +GKQ+HA+  +  +  N  V +A++  Y K  S+E A R+ +
Sbjct: 297 EFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMD 356

Query: 168 DTHNP--NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
            +     NV+S+T ++ G +K    E A ++F  M +R+VV+W AMI GY Q GRN+EA+
Sbjct: 357 QSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAI 416

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           +LF  M+  G  PN  TL   +   A++A L  GK  H  A++ L +    V N++I+ Y
Sbjct: 417 DLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMY 476

Query: 286 AKCGSMEDSLLVFDKLTERN-IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           A+ GS   +  +FD++  R   +TW ++I   AQ+G+GEEA+  FE M   G+ P+ +T 
Sbjct: 477 ARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITY 536

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +G+L AC+H G V +G  Y+ Q K E     +  HYACMVDLL+R+G F EA+EF+  +P
Sbjct: 537 VGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 596

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
            +P    W +LL  C++H N EL E AA ++L++DP +  +Y  ++N  S  G+W + + 
Sbjct: 597 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 656

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           I +  KEK + +  G SW  I+SK+HVF   D  H   D +YA+     E+I+
Sbjct: 657 IWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIK 709



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 210/444 (47%), Gaps = 44/444 (9%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S + +    VF E+P+ + VS T ++    +   + EAI     M      P++FT  
Sbjct: 109 AKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLT 168

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ S    +   +G+++H++  K+GL S V V +++L++Y K    E AT VFE     
Sbjct: 169 NVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVR 228

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +V S+  M+       R + A  LF+ MP R++VSWNAMI GY+Q G + +A+ LF  ML
Sbjct: 229 SVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRML 288

Query: 233 RE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            E  + P+  T+   + A AN+  + +GK  HA  ++     +  V N+LIS YAK GS+
Sbjct: 289 HESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSV 348

Query: 292 EDSLLVFDKLTE---------------------------------RNIVTWNAVICGYAQ 318
           E++  + D+  E                                 R++V W A+I GY Q
Sbjct: 349 ENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQ 408

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA---KLEDPGML 375
           NGR +EAI+ F  M   G  PN  TL  +L  C     ++ G     +A    LE    +
Sbjct: 409 NGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSV 468

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAAR 433
                  ++ + +RSG F  A+     + +      W +++     H   E  +G F   
Sbjct: 469 SN----AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 524

Query: 434 RILALDPEDVSSYVMLSNALSVAG 457
               ++P+ + +YV + +A S AG
Sbjct: 525 LRAGVEPDRI-TYVGVLSACSHAG 547



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 181/388 (46%), Gaps = 55/388 (14%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSS----IEEATRVFEDT--HNPNVVSYTTM 180
           G+ +HA A K GL ++ ++ + +L  Y + +     + +A R+F++      NV ++ ++
Sbjct: 45  GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSL 104

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           +    K  R  DA  +F EMP R+ VSW  M+ G ++ GR  EA+   ++M  +G  P  
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ 164

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            TL   + + A   A  +G+  H+  VK  LG   V V NS+++ Y KCG  E +  VF+
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC-VPVANSVLNMYGKCGDSETATTVFE 223

Query: 300 K-------------------------------LTERNIVTWNAVICGYAQNGRGEEAIEF 328
           +                               + +R+IV+WNA+I GY QNG   +A++ 
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 329 FERM-RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMV 384
           F RM   + + P+  T+  +L AC + G V  G   ++Y  + ++        +    ++
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMA----YNSQVTNALI 339

Query: 385 DLLSRSGRFKEAKEFL-YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPE 441
              ++SG  + A+  +   +  D  +  + ALL G      V++G+  + R +   ++  
Sbjct: 340 STYAKSGSVENARRIMDQSMETDLNVISFTALLEG-----YVKIGDMESAREMFGVMNNR 394

Query: 442 DVSSYVMLSNALSVAGKWDNVSNIRREM 469
           DV ++  +       G+ D   ++ R M
Sbjct: 395 DVVAWTAMIVGYEQNGRNDEAIDLFRSM 422



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 82/229 (35%), Gaps = 68/229 (29%)

Query: 257 GMGKSFHACAVKF-------------------------------------LGKLDVFVGN 279
           G G++ HA AVK                                      L + +VF  N
Sbjct: 43  GAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWN 102

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           SL+S +AK G + D+  VF ++ ER+ V+W  ++ G  + GR  EAI+    M  +G  P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 340 NGVTLLGLLWAC--NHTGLVEK----------------------------GYSYFSQAKL 369
              TL  +L +C     G V +                            G S  +    
Sbjct: 163 TQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVF 222

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           E   +     +  MV L +  GR   A+     +P D  I  W A++ G
Sbjct: 223 ERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMP-DRSIVSWNAMIAG 270


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 173/451 (38%), Positives = 265/451 (58%), Gaps = 39/451 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D +    + F ++P  +V+  + +I RFA+    E+A+ +F +M    + P++FT
Sbjct: 195 CGDNDDAW----RAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFT 250

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F SV+ +S  +E L+L K +H  A K GL ++VFV +A++  Y K   IE++        
Sbjct: 251 FSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQS-------- 302

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                  ++LF+ +  RN VSWN +I  Y Q G  E A++LF  
Sbjct: 303 -----------------------MELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSN 339

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR  +     T    + A A +AAL +G   H    K +   DV VGN+LI  YAKCGS
Sbjct: 340 MLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGS 399

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++D+  +FD L  R+ V+WNA+ICGY+ +G G EAI+ F  M+    +P+ +T +G+L A
Sbjct: 400 IKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSA 459

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C++TG +++G  YF+  K +D G ++P  EHY CMV L+ RSG   +A +F+ D+PF+P 
Sbjct: 460 CSNTGRLDEGKQYFTSMK-QDYG-IEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPS 517

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           +  W+ALLG C IH++VELG  +A+R+L L+P D +S+V+LSN  + A +W NV+ +R+ 
Sbjct: 518 VMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKH 577

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           MK KG+ + PG SWIE +  VH F   D +H
Sbjct: 578 MKRKGVKKEPGLSWIENQGNVHCFTVADTSH 608



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 141/287 (49%), Gaps = 31/287 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFDE+P+ N VS  T+I  +A+ + + EA  LF+R+       + F F +V+    ++E 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             LG+ +H    KVG  SN F+G+A++D                        +Y+   C 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALID------------------------AYSVSGCV 97

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            + RE       +F E+  +++VSW  MI  Y++     EA+  F +M   G  PN+ T 
Sbjct: 98  SMARE-------VFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTF 150

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A   +     GK+ H   +K   + D++VG  L+  Y +CG  +D+   F  + +
Sbjct: 151 AGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPK 210

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            +++ W+ +I  +AQ+G+ E+A+E F +MR   + PN  T   +L A
Sbjct: 211 NDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQA 257



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 13/215 (6%)

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
           +F EMP RN VS+  +I GY+Q+ +  EA  LF  +  EG   N       +    ++  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
             +G+  H C +K     + F+G +LI  Y+  G +  +  VFD+++ +++V+W  +I  
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           YA+N    EA+EFF +MR+ G +PN  T  G+L AC        G   F   K     +L
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC-------LGLQNFDAGKTVHCSVL 174

Query: 376 KPEHY------ACMVDLLSRSGRFKEAKEFLYDLP 404
           K  +         +++L +R G   +A     D+P
Sbjct: 175 KTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMP 209



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           ++C ++        ++F+ + D N VS  TII  + +    E A+ LFS ML   ++ +E
Sbjct: 290 MACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATE 349

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T+ S++ +   L  L LG Q+H    K     +V VG+A++D+Y K  SI++A  +F+ 
Sbjct: 350 VTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDM 409

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEA 224
               + VS+  +ICG        +A+K+F  M         +++  ++   S TGR +E 
Sbjct: 410 LDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEG 469

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
              F  M ++ G+ P      C +
Sbjct: 470 KQYFTSMKQDYGIEPCMEHYTCMV 493


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 260/458 (56%), Gaps = 39/458 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +   + VS   II    +  HY++ I  F+ ML   ++P +FT+GSV+ +  AL  
Sbjct: 408 IFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS 467

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G  +H    K GL S+ FV S ++D+Y K                          CG
Sbjct: 468 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCK--------------------------CG 501

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           ++     ++A KL   +  + VVSWNA++ G+S    +EEA   F EML  GL P+H T 
Sbjct: 502 II-----DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 556

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A + +GK  H   +K     D ++ ++L+  YAKCG M DSLLVF+K+ +
Sbjct: 557 ATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 616

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ V+WNA+ICGYA +G G EA+  FERM+   + PN  T + +L AC+H GL + G  Y
Sbjct: 617 RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRY 676

Query: 364 F----SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           F    +  KLE P +   EH+ACMVD+L RS   +EA +F+  +PF      WK LL  C
Sbjct: 677 FHLMTTHYKLE-PQL---EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSIC 732

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +I  +VE+ E AA  +L LDP+D S Y++LSN  + +GKW +VS  RR +K+  + + PG
Sbjct: 733 KIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPG 792

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           CSWIE++S++H F+ GD+ H  + E+Y +L     +++
Sbjct: 793 CSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 830



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 35/309 (11%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S +   S+   +FD +PD +VVS   ++  + ++  ++E++ LF  M    + P   TF 
Sbjct: 94  SHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFA 153

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            ++ S +ALE+L+LG Q+HA A K GL+ +V  GSA++D+Y K  S++            
Sbjct: 154 VLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD------------ 201

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                              DAL  F  MP RN VSW A I G  Q  +    + LFIEM 
Sbjct: 202 -------------------DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQ 242

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R GL  +  +   A  + A ++ L  G+  HA A+K     D  VG +++  YAK  S+ 
Sbjct: 243 RLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLT 302

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+   F  L    + T NA++ G  + G G EA+  F+ M  + IR + V+L G+  AC 
Sbjct: 303 DARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 362

Query: 353 HTGLVEKGY 361
            T    KGY
Sbjct: 363 ET----KGY 367



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 134/270 (49%), Gaps = 7/270 (2%)

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           G   N FV + +L +Y + +    A RVF+     + VS+ TM+           A+ LF
Sbjct: 47  GFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
             MP  +VVSWNA++ GY Q G  +E+V+LF+EM R G+ P+ +T    + + + +  L 
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           +G   HA AVK   ++DV  G++L+  Y KC S++D+L  F  + ERN V+W A I G  
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCV 226

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA---KLEDPGM 374
           QN +    +E F  M+  G+  +  +      +C     +  G    + A   K     +
Sbjct: 227 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 286

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +       +VD+ +++    +A+   + LP
Sbjct: 287 VG----TAIVDVYAKANSLTDARRAFFGLP 312



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 205/459 (44%), Gaps = 51/459 (11%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           C +   LN   +LH+ A        K S  ++   AI    V   ++++  +   + F  
Sbjct: 260 CAAMSCLNTGRQLHAHAIK-----NKFSSDRVVGTAI----VDVYAKANSLTDARRAFFG 310

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P+  V ++  ++    +     EA+ LF  M+  +IR    +   V  +    +    G
Sbjct: 311 LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQG 370

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +Q+H  A K G   ++ V +A+LDLY K  ++ EA  +F                     
Sbjct: 371 QQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF--------------------- 409

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                     Q M  ++ VSWNA+I    Q G  ++ +  F EMLR G+ P+  T    +
Sbjct: 410 ----------QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVL 459

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A A + +L  G   H   +K     D FV ++++  Y KCG ++++  + D++  + +V
Sbjct: 460 KACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV 519

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WNA++ G++ N   EEA +FF  M   G++P+  T   +L  C +   +E G     Q 
Sbjct: 520 SWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 579

Query: 368 KLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
             ++  ML  E+  + +VD+ ++ G   ++   +++         W A++ G  +H    
Sbjct: 580 IKQE--MLDDEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDFVSWNAMICGYALHG--- 633

Query: 427 LGEFAARRILALDPEDV----SSYVMLSNALSVAGKWDN 461
           LG  A R    +  E+V    +++V +  A S  G +D+
Sbjct: 634 LGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDD 672



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 183/412 (44%), Gaps = 41/412 (9%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  +P+ N VS    I    +   Y   + LF  M  L +  S+ ++ S   S  A+  L
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           N G+QLHA A K    S+  VG+AI+D+Y K +S+ +A R F                  
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG---------------- 310

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                          +P+  V + NAM+ G  + G   EA+ LF  M+R  +  +  +L 
Sbjct: 311 ---------------LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLS 355

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
               A A       G+  H  A+K    +D+ V N+++  Y KC ++ ++ L+F  + ++
Sbjct: 356 GVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK 415

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           + V+WNA+I    QNG  ++ I  F  M   G++P+  T   +L AC     +E  Y   
Sbjct: 416 DSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE--YGLM 473

Query: 365 SQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              K+   G+      A  +VD+  + G   EA++ L+D      +  W A+L G  ++ 
Sbjct: 474 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQK-LHDRIGGQQVVSWNAILSGFSLNK 532

Query: 424 NVELGE--FAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREM 469
             E  +  F+    + L P+  +   +L    ++A    GK  +   I++EM
Sbjct: 533 ESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEM 584



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 4/171 (2%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++ D +    VVS   I+  F+     EEA   FS ML + ++P  FTF +V+ +   L
Sbjct: 507 QKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANL 566

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             + LGKQ+H    K  +  + ++ S ++D+Y K   + ++  VFE     + VS+  MI
Sbjct: 567 ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 626

Query: 182 CGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEAVNLF 228
           CG        +AL++F+ M   NVV    ++ A++   S  G  ++    F
Sbjct: 627 CGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYF 677


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 266/457 (58%), Gaps = 2/457 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTA 120
           ++FD  P  ++VS  T+IG + ++ +  EA+ LF RM+  +  +RP E T  + +     
Sbjct: 181 RLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQ 240

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           + DL LG++LH +    G+   V + +A++D+YIK  S+E A  VFE   +  VVS+TTM
Sbjct: 241 MRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTM 300

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G  K    +DA K+F EMP R+V  WNA++ GY Q  + +EA++LF EM    +VP+ 
Sbjct: 301 IVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDE 360

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A + + AL MG   H    K      V +G SLI  YAKCG++E ++ +F +
Sbjct: 361 ITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKE 420

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + E+N +TW A+ICG A +G   EAIE F  M   G +P+ +T +G+L AC H GLV++G
Sbjct: 421 IPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEG 480

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             +FS  + +     K +HY+CM+DLL R+G   EA++ +  +P +P    W A+   C+
Sbjct: 481 REFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACR 540

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +  N+ LGE AA +++ +DP D   YV+L+N  + A        +R  M+  G+ +VPGC
Sbjct: 541 MQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGC 600

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           S IE+   VH F+  D++H  +  IY  L   T QI+
Sbjct: 601 SCIELNGVVHEFIVKDKSHMDSHAIYDCLHEITLQIK 637



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 166/384 (43%), Gaps = 74/384 (19%)

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           RP   TF  ++ +   L +   G    A   ++GL S+VFV +A          +E+A R
Sbjct: 122 RPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARR 181

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           +F+ +   ++VS+ T+I G ++R                               G   EA
Sbjct: 182 LFDRSPVRDLVSWNTLIGGYVRR-------------------------------GNPAEA 210

Query: 225 VNLFIEMLREGLV--PNHSTLPCAIIAAANIAALGMGKSFH--------ACAVKFLGKL- 273
           + LF  M+ E  V  P+  T+  A+     +  L +G+  H        +C V+ +  L 
Sbjct: 211 LELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALM 270

Query: 274 DVFVG----------------------NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           D+++                        ++I  +AK G M+D+  VFD++ ER++  WNA
Sbjct: 271 DMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNA 330

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAK 368
           ++ GY Q  + +EA+  F  M+   + P+ +T++ LL AC+  G +E G   + Y  + +
Sbjct: 331 LMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHR 390

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC--QIHSNVE 426
           L     L       ++D+ ++ G  ++A     ++P    +  W A++ G     H+N  
Sbjct: 391 LVFSVALGTS----LIDMYAKCGNIEKAIHIFKEIPEKNALT-WTAMICGLANHGHANEA 445

Query: 427 LGEFAARRILALDPEDVSSYVMLS 450
           +  F     L   P++++   +LS
Sbjct: 446 IEHFRTMIELGQKPDEITFIGVLS 469



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 14/179 (7%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQT--------GRNEEAVNLFIEMLREGLV-PNHSTL 243
           AL L   +P     ++NA I   S +        G     + L+  +LR G   P+H T 
Sbjct: 72  ALALLSSLP---ASAYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTF 128

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
           P  + A A +   G G +  A  ++     DVFV N+   F +  G MED+  +FD+   
Sbjct: 129 PFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPV 188

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRING--IRPNGVTLLGLLWACNHTGLVEKG 360
           R++V+WN +I GY + G   EA+E F RM      +RP+ VT++  +  C     +E G
Sbjct: 189 RDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELG 247


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 260/458 (56%), Gaps = 39/458 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +   + VS   II    +  HY++ I  F+ ML   ++P +FT+GSV+ +  AL  
Sbjct: 408 IFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS 467

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G  +H    K GL S+ FV S ++D+Y K                          CG
Sbjct: 468 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCK--------------------------CG 501

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           ++     ++A KL   +  + VVSWNA++ G+S    +EEA   F EML  GL P+H T 
Sbjct: 502 II-----DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 556

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A + +GK  H   +K     D ++ ++L+  YAKCG M DSLLVF+K+ +
Sbjct: 557 ATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 616

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ V+WNA+ICGYA +G G EA+  FERM+   + PN  T + +L AC+H GL + G  Y
Sbjct: 617 RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRY 676

Query: 364 F----SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           F    +  KLE P +   EH+ACMVD+L RS   +EA +F+  +PF      WK LL  C
Sbjct: 677 FHLMTTHYKLE-PQL---EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSIC 732

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +I  +VE+ E AA  +L LDP+D S Y++LSN  + +GKW +VS  RR +K+  + + PG
Sbjct: 733 KIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPG 792

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           CSWIE++S++H F+ GD+ H  + E+Y +L     +++
Sbjct: 793 CSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 830



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 35/309 (11%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S +   S+   +FD +PD +VVS   ++  + ++  ++E++ LF  M    + P   TF 
Sbjct: 94  SHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFA 153

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            ++ S +ALE+L+LG Q+HA A K GL+ +V  GSA++D+Y K  S++            
Sbjct: 154 VLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD------------ 201

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                              DAL  F  MP RN VSW A I G  Q  +    + LFIEM 
Sbjct: 202 -------------------DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQ 242

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R GL  +  +   A  + A ++ L  G+  HA A+K     D  VG +++  YAK  S+ 
Sbjct: 243 RLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLT 302

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+   F  L    + T NA++ G  + G G EA+  F+ M  + IR + V+L G+  AC 
Sbjct: 303 DARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACA 362

Query: 353 HTGLVEKGY 361
            T    KGY
Sbjct: 363 ET----KGY 367



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 133/270 (49%), Gaps = 7/270 (2%)

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           G     FV + +L +Y + +    A RVF+     + VS+ TM+           A+ LF
Sbjct: 47  GFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
             MP  +VVSWNA++ GY Q G  +E+V+LF+EM R G+ P+ +T    + + + +  L 
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           +G   HA AVK   ++DV  G++L+  Y KC S++D+L  F  + ERN V+W A I G  
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCV 226

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA---KLEDPGM 374
           QN +    +E F  M+  G+  +  +      +C     +  G    + A   K     +
Sbjct: 227 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 286

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +       +VD+ +++    +A+   + LP
Sbjct: 287 VG----TAIVDVYAKANSLTDARRAFFGLP 312



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 205/459 (44%), Gaps = 51/459 (11%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           C +   LN   +LH+ A        K S  ++   AI    V   ++++  +   + F  
Sbjct: 260 CAAMSCLNTGRQLHAHAIK-----NKFSSDRVVGTAI----VDVYAKANSLTDARRAFFG 310

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P+  V ++  ++    +     EA+ LF  M+  +IR    +   V  +    +    G
Sbjct: 311 LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQG 370

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +Q+H  A K G   ++ V +A+LDLY K  ++ EA  +F                     
Sbjct: 371 QQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF--------------------- 409

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                     Q M  ++ VSWNA+I    Q G  ++ +  F EMLR G+ P+  T    +
Sbjct: 410 ----------QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVL 459

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A A + +L  G   H   +K     D FV ++++  Y KCG ++++  + D++  + +V
Sbjct: 460 KACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV 519

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WNA++ G++ N   EEA +FF  M   G++P+  T   +L  C +   +E G     Q 
Sbjct: 520 SWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 579

Query: 368 KLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
             ++  ML  E+  + +VD+ ++ G   ++   +++         W A++ G  +H    
Sbjct: 580 IKQE--MLDDEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDFVSWNAMICGYALHG--- 633

Query: 427 LGEFAARRILALDPEDV----SSYVMLSNALSVAGKWDN 461
           LG  A R    +  E+V    +++V +  A S  G +D+
Sbjct: 634 LGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDD 672



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 183/412 (44%), Gaps = 41/412 (9%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  +P+ N VS    I    +   Y   + LF  M  L +  S+ ++ S   S  A+  L
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           N G+QLHA A K    S+  VG+AI+D+Y K +S+ +A R F                  
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG---------------- 310

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                          +P+  V + NAM+ G  + G   EA+ LF  M+R  +  +  +L 
Sbjct: 311 ---------------LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLS 355

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
               A A       G+  H  A+K    +D+ V N+++  Y KC ++ ++ L+F  + ++
Sbjct: 356 GVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK 415

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           + V+WNA+I    QNG  ++ I  F  M   G++P+  T   +L AC     +E  Y   
Sbjct: 416 DSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE--YGLM 473

Query: 365 SQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              K+   G+      A  +VD+  + G   EA++ L+D      +  W A+L G  ++ 
Sbjct: 474 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQK-LHDRIGGQQVVSWNAILSGFSLNK 532

Query: 424 NVELGE--FAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREM 469
             E  +  F+    + L P+  +   +L    ++A    GK  +   I++EM
Sbjct: 533 ESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEM 584



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 4/171 (2%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++ D +    VVS   I+  F+     EEA   FS ML + ++P  FTF +V+ +   L
Sbjct: 507 QKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANL 566

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             + LGKQ+H    K  +  + ++ S ++D+Y K   + ++  VFE     + VS+  MI
Sbjct: 567 ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 626

Query: 182 CGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEAVNLF 228
           CG        +AL++F+ M   NVV    ++ A++   S  G  ++    F
Sbjct: 627 CGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYF 677


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/446 (37%), Positives = 269/446 (60%), Gaps = 43/446 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FDE+PD NVVS TT+I  ++  +   +A+     ML   +RP+ +T+ SV+ +   L  
Sbjct: 73  LFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGL-- 130

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LNL +QLH    KVGL+S+VFV SA++D Y KL           + H             
Sbjct: 131 LNL-RQLHGSILKVGLESDVFVRSALIDTYSKLG----------EQH------------- 166

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                   DAL +F EM   ++V WN++IGG++Q    +E ++L+  M R   V + STL
Sbjct: 167 --------DALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTL 218

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-T 302
              + A   +A L +G+  H   +K+    D+ + N+L+  Y KCGS+ED+ L+F ++ T
Sbjct: 219 TSVLRACTGLALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCGSLEDANLLFTRMMT 276

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+++++W+ +I G AQNG   +A++ FE M+  G +PN +T+LG+L+AC+H GLV  G+ 
Sbjct: 277 EKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWY 336

Query: 363 YFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           YF   K     DPG    EHY C++DLL R+G+  EA + ++++  +P    W+ LLG C
Sbjct: 337 YFQSMKEHFGIDPG---REHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGAC 393

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H NV+L  +AA+ IL LDP D  +Y++LSN  + + KW++V+ +RR+M+ +G+ + PG
Sbjct: 394 RVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPG 453

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEI 505
           CSWIE+  +VH F+ GD +H   +EI
Sbjct: 454 CSWIEVSKQVHAFILGDNSHPRIEEI 479



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 6/254 (2%)

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           VF + + P      T+I   +K    ++A  LF EMP RNVVSW  MI  YS +  N +A
Sbjct: 42  VFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKA 101

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           ++  I MLREG+ PN  T    + A   +  L   +  H   +K   + DVFV ++LI  
Sbjct: 102 LDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSALIDT 158

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+K G   D+L VF+++   ++V WN++I G+AQN  G+E +  ++RM+      +  TL
Sbjct: 159 YSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTL 218

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
             +L AC    L+E G          D  ++       ++D+  + G  ++A      + 
Sbjct: 219 TSVLRACTGLALLELGRQVHVHVLKYDQDLILNN---ALLDMYCKCGSLEDANLLFTRMM 275

Query: 405 FDPGIGFWKALLGG 418
            +  +  W  ++ G
Sbjct: 276 TEKDVISWSTMIAG 289


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 260/458 (56%), Gaps = 39/458 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +   + VS   II    +  HY++ I  F+ ML   ++P +FT+GSV+ +  AL  
Sbjct: 450 IFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS 509

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G  +H    K GL S+ FV S ++D+Y K                          CG
Sbjct: 510 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCK--------------------------CG 543

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           ++     ++A KL   +  + VVSWNA++ G+S    +EEA   F EML  GL P+H T 
Sbjct: 544 II-----DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTF 598

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A + +GK  H   +K     D ++ ++L+  YAKCG M DSLLVF+K+ +
Sbjct: 599 ATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEK 658

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ V+WNA+ICGYA +G G EA+  FERM+   + PN  T + +L AC+H GL + G  Y
Sbjct: 659 RDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRY 718

Query: 364 F----SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           F    +  KLE P +   EH+ACMVD+L RS   +EA +F+  +PF      WK LL  C
Sbjct: 719 FHLMTTHYKLE-PQL---EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSIC 774

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +I  +VE+ E AA  +L LDP+D S Y++LSN  + +GKW +VS  RR +K+  + + PG
Sbjct: 775 KIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPG 834

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           CSWIE++S++H F+ GD+ H  + E+Y +L     +++
Sbjct: 835 CSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 872



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 157/323 (48%), Gaps = 41/323 (12%)

Query: 45  RTDSVSCG------SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           R D+VS        S +   S+   +FD +PD +VVS   ++  + ++  ++E++ LF  
Sbjct: 122 RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 181

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M    + P   TF  ++ S +ALE+L+LG Q+HA A K GL+ +V  GSA++D+Y K  S
Sbjct: 182 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 241

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           ++                               DAL  F  MP RN VSW A I G  Q 
Sbjct: 242 LD-------------------------------DALCFFYGMPERNWVSWGAAIAGCVQN 270

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
            +    + LFIEM R GL  +  +   A  + A ++ L  G+  HA A+K     D  VG
Sbjct: 271 EQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG 330

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
            +++  YAK  S+ D+   F  L    + T NA++ G  + G G EA+  F+ M  + IR
Sbjct: 331 TAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIR 390

Query: 339 PNGVTLLGLLWACNHTGLVEKGY 361
            + V+L G+  AC  T    KGY
Sbjct: 391 FDVVSLSGVFSACAET----KGY 409



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 133/270 (49%), Gaps = 7/270 (2%)

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           G     FV + +L +Y + +    A RVF+     + VS+ TM+           A+ LF
Sbjct: 89  GFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 148

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
             MP  +VVSWNA++ GY Q G  +E+V+LF+EM R G+ P+ +T    + + + +  L 
Sbjct: 149 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 208

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           +G   HA AVK   ++DV  G++L+  Y KC S++D+L  F  + ERN V+W A I G  
Sbjct: 209 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCV 268

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA---KLEDPGM 374
           QN +    +E F  M+  G+  +  +      +C     +  G    + A   K     +
Sbjct: 269 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 328

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +       +VD+ +++    +A+   + LP
Sbjct: 329 VG----TAIVDVYAKANSLTDARRAFFGLP 354



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 205/459 (44%), Gaps = 51/459 (11%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           C +   LN   +LH+ A        K S  ++   AI    V   ++++  +   + F  
Sbjct: 302 CAAMSCLNTGRQLHAHAIK-----NKFSSDRVVGTAI----VDVYAKANSLTDARRAFFG 352

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P+  V ++  ++    +     EA+ LF  M+  +IR    +   V  +    +    G
Sbjct: 353 LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQG 412

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +Q+H  A K G   ++ V +A+LDLY K  ++ EA  +F                     
Sbjct: 413 QQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIF--------------------- 451

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                     Q M  ++ VSWNA+I    Q G  ++ +  F EMLR G+ P+  T    +
Sbjct: 452 ----------QGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVL 501

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A A + +L  G   H   +K     D FV ++++  Y KCG ++++  + D++  + +V
Sbjct: 502 KACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVV 561

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WNA++ G++ N   EEA +FF  M   G++P+  T   +L  C +   +E G     Q 
Sbjct: 562 SWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQI 621

Query: 368 KLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
             ++  ML  E+  + +VD+ ++ G   ++   +++         W A++ G  +H    
Sbjct: 622 IKQE--MLDDEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDFVSWNAMICGYALHG--- 675

Query: 427 LGEFAARRILALDPEDV----SSYVMLSNALSVAGKWDN 461
           LG  A R    +  E+V    +++V +  A S  G +D+
Sbjct: 676 LGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDD 714



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 183/412 (44%), Gaps = 41/412 (9%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  +P+ N VS    I    +   Y   + LF  M  L +  S+ ++ S   S  A+  L
Sbjct: 249 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 308

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           N G+QLHA A K    S+  VG+AI+D+Y K +S+ +A R F                  
Sbjct: 309 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFG---------------- 352

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                          +P+  V + NAM+ G  + G   EA+ LF  M+R  +  +  +L 
Sbjct: 353 ---------------LPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLS 397

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
               A A       G+  H  A+K    +D+ V N+++  Y KC ++ ++ L+F  + ++
Sbjct: 398 GVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK 457

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           + V+WNA+I    QNG  ++ I  F  M   G++P+  T   +L AC     +E  Y   
Sbjct: 458 DSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE--YGLM 515

Query: 365 SQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              K+   G+      A  +VD+  + G   EA++ L+D      +  W A+L G  ++ 
Sbjct: 516 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQK-LHDRIGGQQVVSWNAILSGFSLNK 574

Query: 424 NVELGE--FAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREM 469
             E  +  F+    + L P+  +   +L    ++A    GK  +   I++EM
Sbjct: 575 ESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEM 626


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 174/465 (37%), Positives = 271/465 (58%), Gaps = 39/465 (8%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T    CGS  D      + F+   D N ++ + ++  +A+    ++A+ LF++M   
Sbjct: 259 ALVTMYAKCGSLDDAV----RTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSS 314

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + PSEFT   VI + + L  +  GKQ+H++A K+G    ++V SA++D+Y K  S+ +A
Sbjct: 315 GVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADA 374

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            + FE    P+VV                                W ++I GY Q G  E
Sbjct: 375 RKGFECVQQPDVVL-------------------------------WTSIITGYVQNGDYE 403

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
             +NL+ +M  E ++PN  T+   + A +++AAL  GK  HA  +K+  KL+V +G++L 
Sbjct: 404 GGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALS 463

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + Y KCGS++D  L+F ++  R++++WNA+I G +QNG G +A+E FE+M + GI+P+ V
Sbjct: 464 AMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPV 523

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFL 400
           T + LL AC+H GLV++G+ YF    + D   + P  EHYACMVD+LSR+G+  EAKEF+
Sbjct: 524 TFVNLLSACSHMGLVDRGWEYFKM--MFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFI 581

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
                D G+  W+ LLG C+ H N ELG +A  +++ L   + S+YV+LS+  +  G  +
Sbjct: 582 ESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRE 641

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           NV  +RR MK +G+ + PGCSWIE+K  VHVFV GD  H   DEI
Sbjct: 642 NVERVRRIMKARGVNKEPGCSWIELKGLVHVFVVGDNQHPQVDEI 686



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 191/382 (50%), Gaps = 39/382 (10%)

Query: 53  SESDKFSSVHQVFDEVPD--LNVVSATTIIGRFAKQHHYEE---AIYLFSRMLLLN-IRP 106
           ++++  S    +FD + D   + VS  ++I  F++ H       AI LF RM+  N + P
Sbjct: 57  AKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIP 116

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           +  T   V  +++ L D+  GKQ H+ A K G   +V+VGS++L++Y K   + +A ++F
Sbjct: 117 NAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLF 176

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
           +     N VS+ TM                               I GY+ +   ++AV 
Sbjct: 177 DRMPERNTVSWATM-------------------------------ISGYASSDIADKAVE 205

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           +F  M RE  + N   L   + A  +   +  G+  H+ A+K      V V N+L++ YA
Sbjct: 206 VFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYA 265

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCGS++D++  F+   ++N +TW+A++ GYAQ G  ++A++ F +M  +G+ P+  TL+G
Sbjct: 266 KCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVG 325

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           ++ AC+    V +G    S A     G L+    + +VD+ ++ G   +A++  ++    
Sbjct: 326 VINACSDLCAVVEGKQMHSFAFKLGFG-LQLYVLSAVVDMYAKCGSLADARKG-FECVQQ 383

Query: 407 PGIGFWKALLGGCQIHSNVELG 428
           P +  W +++ G   + + E G
Sbjct: 384 PDVVLWTSIITGYVQNGDYEGG 405



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 194/405 (47%), Gaps = 46/405 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD +P+ N VS  T+I  +A     ++A+ +F  M       +EF   SV+ + T+  
Sbjct: 174 KLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDV 233

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +  G+Q+H+ A K GL + V V +A++ +Y K  S+++A R FE + + N ++++ M+ 
Sbjct: 234 FVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVT 293

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G  +    + ALKLF +M                                  G++P+  T
Sbjct: 294 GYAQGGDSDKALKLFNKMH-------------------------------SSGVLPSEFT 322

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I A +++ A+  GK  H+ A K    L ++V ++++  YAKCGS+ D+   F+ + 
Sbjct: 323 LVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQ 382

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           + ++V W ++I GY QNG  E  +  + +M++  + PN +T+  +L AC+    +++G  
Sbjct: 383 QPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQ 442

Query: 363 YFSQA-----KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
             ++      KLE P        + +  + ++ G   +     + +P    I  W A++ 
Sbjct: 443 MHARIIKYGFKLEVP------IGSALSAMYTKCGSLDDGYLIFWRMPSRDVIS-WNAMIS 495

Query: 418 GCQI--HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           G     H N  L  F    +  + P+ V ++V L +A S  G  D
Sbjct: 496 GLSQNGHGNKALELFEKMLLEGIKPDPV-TFVNLLSACSHMGLVD 539



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 139/297 (46%), Gaps = 37/297 (12%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+ LHA   K G  S+++V +  L+LY K + +  A  +F D+ N N             
Sbjct: 30  GRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLF-DSINDN------------- 75

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE---AVNLFIEMLR-EGLVPNHST 242
                           ++ VSWN++I  +SQ   +     A++LF  M+R   ++PN  T
Sbjct: 76  ---------------DKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHT 120

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L     AA+N++ +  GK  H+ AVK     DV+VG+SL++ Y K G + D+  +FD++ 
Sbjct: 121 LAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMP 180

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ERN V+W  +I GYA +   ++A+E FE MR      N   L  +L A      V  G  
Sbjct: 181 ERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQ 240

Query: 363 YFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             S A     G+L     A  +V + ++ G   +A    ++   D     W A++ G
Sbjct: 241 VHSLAI--KNGLLAIVSVANALVTMYAKCGSLDDAVR-TFEFSGDKNSITWSAMVTG 294



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P H  L   +I   +   +  G++ HA  +K      ++V N+ ++ YAK   +  +L +
Sbjct: 9   PQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTL 68

Query: 298 FDKL--TERNIVTWNAVICGYAQNGRGEE---AIEFFER-MRINGIRPNGVTLLGLLWAC 351
           FD +   +++ V+WN++I  ++QN        AI  F R MR N + PN  TL G+  A 
Sbjct: 69  FDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAA 128

Query: 352 NHTGLVEKGYSYFSQA 367
           ++   V  G    S A
Sbjct: 129 SNLSDVVAGKQAHSVA 144


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 272/459 (59%), Gaps = 35/459 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ +      + +D +P  ++++   +I  +++   + +A+ LFS+M   +I  ++ T  
Sbjct: 330 SKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLS 389

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ S  +L+ + + KQ+H  + K G+ S+ +V +++LD Y K + I+EA+++FE     
Sbjct: 390 TVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFE----- 444

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                     E    ++V++ +MI  YSQ G  EEA+ L+++M 
Sbjct: 445 --------------------------ERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQ 478

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              + P+       + A AN++A   GK  H  A+KF    D+F  NSL++ YAKCGS+E
Sbjct: 479 DADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIE 538

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+   F ++  R IV+W+A+I GYAQ+G G+EA+  F +M  +G+ PN +TL+ +L ACN
Sbjct: 539 DADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACN 598

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLV +G  YF   K+E    +KP  EHYACM+DLL RSG+  EA E +  +PF+    
Sbjct: 599 HAGLVNEGKQYFE--KMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGF 656

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALLG  +IH N+ELG+ AA+ +  L+PE   ++V+L+N  + AG W+NV+ +R+ MK
Sbjct: 657 VWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMK 716

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +  + + PG SWIEIK KV+ F+ GDR+H  +DEIYA L
Sbjct: 717 DSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKL 755



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 189/379 (49%), Gaps = 37/379 (9%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P++R   V+  S+  +F    ++ DE  +L+VVS ++++  + +    EEA+ +F+ M L
Sbjct: 16  PSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCL 75

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
           L ++ +EFTF SV+ + +   DLN+G+++H  A   G +S+ FV + ++ +Y K      
Sbjct: 76  LGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAK------ 129

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
                               CGLL     +D+ +LF  +  RNVVSWNA+   Y Q+   
Sbjct: 130 --------------------CGLL-----DDSRRLFGGIVERNVVSWNALFSCYVQSELC 164

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
            EAV LF EM+R G++PN  ++   + A A +    +G+  H   +K    LD F  N+L
Sbjct: 165 GEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANAL 224

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           +  Y+K G +E ++ VF  +   ++V+WNA+I G   +   + A+   + M+ +G RPN 
Sbjct: 225 VDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNM 284

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEF 399
            TL   L AC   G  E G    S     D      + +A   +VD+ S+     +A+  
Sbjct: 285 FTLSSALKACAAMGFKELGRQLHSSLIKMDA---HSDLFAAVGLVDMYSKCEMMDDARRA 341

Query: 400 LYDLPFDPGIGFWKALLGG 418
              +P    I  W AL+ G
Sbjct: 342 YDSMPKKDIIA-WNALISG 359



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 171/361 (47%), Gaps = 33/361 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF ++   +VVS   II         + A+ L   M     RP+ FT  S + +  A+  
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             LG+QLH+   K+   S++F    ++D+Y K   +++A R ++     +++++  +I  
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALI-- 357

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                         GYSQ G + +AV+LF +M  E +  N +TL
Sbjct: 358 -----------------------------SGYSQCGDHLDAVSLFSKMFSEDIDFNQTTL 388

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + A++ A+ + K  H  ++K     D +V NSL+  Y KC  ++++  +F++ T 
Sbjct: 389 STVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTW 448

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            ++V + ++I  Y+Q G GEEA++ + +M+   I+P+      LL AC +    E+G   
Sbjct: 449 EDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              A ++   M        +V++ ++ G  ++A     ++P + GI  W A++GG   H 
Sbjct: 509 HVHA-IKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP-NRGIVSWSAMIGGYAQHG 566

Query: 424 N 424
           +
Sbjct: 567 H 567



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 4/244 (1%)

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K  RF  A KL  E    +VVSW++++ GY Q G  EEA+ +F EM   G+  N  T P 
Sbjct: 28  KCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPS 87

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + A +    L MG+  H  AV    + D FV N+L+  YAKCG ++DS  +F  + ERN
Sbjct: 88  VLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERN 147

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           +V+WNA+   Y Q+    EA+  F+ M  +GI PN  ++  +L AC   GL E       
Sbjct: 148 VVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNAC--AGLQEGDLGRKI 205

Query: 366 QAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
              +   G+   +  A  +VD+ S++G  + A     D+   P +  W A++ GC +H  
Sbjct: 206 HGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAH-PDVVSWNAIIAGCVLHDC 264

Query: 425 VELG 428
            +L 
Sbjct: 265 NDLA 268



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 52/91 (57%)

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            HA  +KF    D  + N L++ Y+KC     +  + D+ +E ++V+W++++ GY QNG 
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            EEA+  F  M + G++ N  T   +L AC+
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACS 93


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 168/445 (37%), Positives = 263/445 (59%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H+VFDE    ++VS  ++I  + ++    EA+ ++ +M+  +++P E T   V+ +   L
Sbjct: 209 HKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQL 268

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           E L LG+++H +  + GL   + + +A++D+Y+K   +E    +F++     VVS+TTMI
Sbjct: 269 ESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMI 328

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G  K    + A KLF +MP +NVV+WNAMIG   Q   + EA+ LF EM    + P+  
Sbjct: 329 VGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKV 388

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A + + AL  G   H    K    LDV +G +LI  YAKCG+M  +L VF+++
Sbjct: 389 TMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEM 448

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             RN +TW A+I G A  G   +AI +F +M  +G+ P+ +T LG+L AC H GLVE+G 
Sbjct: 449 PRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGR 508

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            YF Q K       +P+HY+CMV+LL R+G  +EA+E +  +P +     W AL   C I
Sbjct: 509 KYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGI 568

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N+ +GE AA ++L LDP D   YV+L+N    AGKW+   NIR+ M E+G+ + PG S
Sbjct: 569 HRNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSS 628

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIY 506
            IE+   ++ F+  D++H  +++IY
Sbjct: 629 SIEVNGIINEFIVRDKSHPQSEQIY 653



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 193/429 (44%), Gaps = 73/429 (17%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTF 111
           SES       ++ + + + NV S   +I    +  + ++ + L+ RML     RP  +T+
Sbjct: 98  SESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTY 157

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
             +      L    +G ++     K+G   ++++ + I+ +   L S+ E+         
Sbjct: 158 SFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHM---LVSVGES--------- 205

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                      GL        A K+F E   R++VSWN++I GY +  +  EA+ ++ +M
Sbjct: 206 -----------GL--------AHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQM 246

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           + E + P+  T+   + A A + +L +G+  H    +    L + + N+L+  Y KCG +
Sbjct: 247 ITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDL 306

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGE---------------------------- 323
           E   ++FD + ++ +V+W  +I GYA+NG  +                            
Sbjct: 307 EAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQAN 366

Query: 324 ---EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKP 377
              EA+E F  M+ + ++P+ VT+L  L AC+  G ++ G   ++Y  +  L     L  
Sbjct: 367 LSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLS----LDV 422

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL- 436
                ++D+ ++ G   +A +   ++P    +  W A++GG  ++ NV    F   +++ 
Sbjct: 423 ALGTALIDMYAKCGNMTKALQVFNEMPRRNSLT-WTAIIGGLALYGNVNDAIFYFSKMID 481

Query: 437 -ALDPEDVS 444
             L P++++
Sbjct: 482 SGLMPDEIT 490



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 114/239 (47%), Gaps = 5/239 (2%)

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNH 240
           C + +    +  +K+   + + NV SWNA+I G  ++   ++ + L+  ML R G  P++
Sbjct: 95  CAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDN 154

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T        AN+    MG       +K     D+++ N +I      G    +  VFD+
Sbjct: 155 YTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDE 214

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
              R++V+WN++I GY +  +  EA+  +++M    ++P+ VT++G++ AC     ++ G
Sbjct: 215 GCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLG 274

Query: 361 YSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                   +E+ G+ LK      ++D+  + G   EA + L+D      +  W  ++ G
Sbjct: 275 REI--HRYIEESGLNLKISLVNALMDMYVKCGDL-EAGKVLFDNMRKKTVVSWTTMIVG 330



 Score = 45.8 bits (107), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 13/211 (6%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  +   ++    +   QVF+E+P  N ++ T IIG  A   +  +AI+ FS+M+  
Sbjct: 423 ALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDS 482

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQ-LHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
            + P E TF  V+ +      +  G++      ++  L       S +++L  +   +EE
Sbjct: 483 GLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEE 542

Query: 162 ATRVFEDT---HNPNVVSYTTMICG----LLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
           A  + +      +  V       CG    LL  ER   A KL    PH + + +  +   
Sbjct: 543 AEELIKTMPMEADAMVWGALFFACGIHRNLLIGER--AASKLLDLDPHDSGI-YVLLANM 599

Query: 215 YSQTGRNEEAVNLFIEMLREGL--VPNHSTL 243
           Y + G+ EEA N+   M+  G+   P  S++
Sbjct: 600 YREAGKWEEAQNIRKMMMERGVEKTPGSSSI 630


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/455 (36%), Positives = 271/455 (59%), Gaps = 31/455 (6%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+ + + + ++ TT++    +     EA+ +F RM    +   ++TFGS++ +  AL  
Sbjct: 233 LFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 292

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+HA+ T+   + NVFVGSA++D+Y K  S+  A  VF                 
Sbjct: 293 LEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVF----------------- 335

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                         + M  +N++SW AMI GY Q G  EEAV +F EM R+G+ P+  TL
Sbjct: 336 --------------RRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTL 381

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I + AN+A+L  G  FH  A+    +  V V N+L++ Y KCGS+ED+  +FD+++ 
Sbjct: 382 GSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSF 441

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            + V+W A++ GYAQ G+ +E I+ FE+M   G++P+GVT +G+L AC+ +GLV+KG SY
Sbjct: 442 HDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSY 501

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F   + +   +   +HY CM+DL SRSG  K+A+EF+  +P  P    W  LL  C++  
Sbjct: 502 FHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRG 561

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           ++E+G++AA  +L LDP++ +SYV+L +  +  G+W++V+ +RR M+++ + + PGCSWI
Sbjct: 562 DMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWI 621

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + K+KVH+F   D++H  +  IY  L+    ++ E
Sbjct: 622 KYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVE 656



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 193/362 (53%), Gaps = 8/362 (2%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL--LNIRPSEFTFGSVIPSS 118
           + ++F  +P  + VS   ++  F++   +  A   +  +L     +RPS  T   V+  +
Sbjct: 96  MERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVA 155

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           +AL D  LG+Q+H    ++G  +  F GS ++D+Y K+  I +A RVF++    NVV   
Sbjct: 156 SALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCN 215

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           TMI GLL+ +   +A  LF+ +  R+ ++W  M+ G +Q G   EA+++F  M  EG+  
Sbjct: 216 TMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGI 275

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  T    + A   +AAL  GK  HA   +   + +VFVG++L+  Y+KC S+  +  VF
Sbjct: 276 DQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVF 335

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
            ++  +NI++W A+I GY QNG GEEA+  F  M+ +GI+P+  TL  ++ +C +   +E
Sbjct: 336 RRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLE 395

Query: 359 KGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +G  +   A +     L+P       +V L  + G  ++A     ++ F   +  W AL+
Sbjct: 396 EGAQFHCLALVSG---LRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVS-WTALV 451

Query: 417 GG 418
            G
Sbjct: 452 MG 453



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 137/295 (46%), Gaps = 44/295 (14%)

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           S  ++ + +L  Y     +  A RVF+     N+V+  +++  L +     D  +LF  +
Sbjct: 44  SPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSL 103

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGM 258
           P R+ VS+NA++ G+S+ G +  A   ++ +LR+  G+ P+  T+   ++ A+ +    +
Sbjct: 104 PQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRAL 163

Query: 259 GKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV---------- 307
           G+  H C +  LG     F G+ L+  YAK G + D+  VFD++  +N+V          
Sbjct: 164 GRQVH-CQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLL 222

Query: 308 ---------------------TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
                                TW  ++ G  QNG   EA++ F RMR  G+  +  T   
Sbjct: 223 RCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGS 282

Query: 347 LLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLS--RSGRFKEA 396
           +L AC     +E+G   ++Y ++   ED   +     + +VD+ S  RS R  EA
Sbjct: 283 ILTACGALAALEEGKQIHAYITRTCYEDNVFVG----SALVDMYSKCRSVRLAEA 333


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 184/547 (33%), Positives = 288/547 (52%), Gaps = 70/547 (12%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P +    V+  S+  + S   ++F+ +PD NVV+   +I  F +    +EA  LFS M+ 
Sbjct: 108 PLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMIS 167

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
             + P   TF S +PS T    L  GK++H +  + G+  +VF+ SA++D+Y K   +  
Sbjct: 168 AGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGM 227

Query: 162 ATR-----------------------------------VFEDTHNPNVVSYTTMI--C-- 182
           A +                                   + E+  +PN V+  +++  C  
Sbjct: 228 ACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAG 287

Query: 183 -----------------GLLKRE--------------RFEDALKLFQEMPHRNVVSWNAM 211
                            GL +R               R + A ++F+ MP ++ V WNA+
Sbjct: 288 LATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAI 347

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           I   SQ G+ +EA++LF +M REGL  +  ++  A+ A AN+ AL  GK+ H+  +K   
Sbjct: 348 ITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAF 407

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
             +VF  ++LI  Y KCG++  +  VFD + E+N V+WN++I  Y  +G  E ++  F +
Sbjct: 408 DSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHK 467

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           M  +GI+P+ VT L +L AC H G V+KG  YF     E     + EHYAC+VDL  R+G
Sbjct: 468 MLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAG 527

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451
           R  EA E + ++PF P  G W  LLG C++H NVEL E A+R +L LDPE+   YV+LSN
Sbjct: 528 RLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSN 587

Query: 452 ALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
             + AG+W +V  IR  MK++G+ +VPG SWIE+    H+FV  D +H  + +IY+VL +
Sbjct: 588 VHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNN 647

Query: 512 CTEQIRE 518
              ++R+
Sbjct: 648 LLLELRK 654



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 161/370 (43%), Gaps = 39/370 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E+       ++FD++P+ + V    ++  F K      A+ +F  M     +P+  TF 
Sbjct: 18  AENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFA 77

Query: 113 SV--IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           SV  I +S AL +   G QLH      G   +  V +A++ +Y K   + +A ++F    
Sbjct: 78  SVLSICASEALSE--FGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMP 135

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           + NVV++  MI G                               + Q G  +EA  LF E
Sbjct: 136 DTNVVTWNGMIAG-------------------------------FVQNGFMDEASLLFSE 164

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+  G+ P+  T    + +    A+L  GK  H   ++    LDVF+ ++LI  Y KC  
Sbjct: 165 MISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRD 224

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  +F + T  +IV   A+I GY  NG   +A+E F  +    + PN VTL  +L A
Sbjct: 225 VGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPA 284

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C   GL          A +   G+ +  H  + ++D+ ++ GR   A +    +P    +
Sbjct: 285 C--AGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAV 342

Query: 410 GFWKALLGGC 419
             W A++  C
Sbjct: 343 -CWNAIITNC 351



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           +D FVG+SLI  YA+ G +ED+  +FDK+  ++ V WN ++ G+ + G    A++ FE M
Sbjct: 5   VDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDM 64

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
           R    +PN +T   +L  C    L E G +      +       P     +V + S+ G+
Sbjct: 65  RNCQTKPNSITFASVLSICASEALSEFG-NQLHGLVISCGFHFDPLVANALVAMYSKFGQ 123

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGG 418
             +A +    +P D  +  W  ++ G
Sbjct: 124 LSDALKLFNTMP-DTNVVTWNGMIAG 148


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 263/463 (56%), Gaps = 31/463 (6%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ES    S+ +VF+ +P  ++VS  T+I   A+   +E+A+ +   M   ++RP  FT  S
Sbjct: 142 ESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSS 201

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+P      +L  GK++H +A + G  ++VF+GS+++D+Y K +                
Sbjct: 202 VLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCT---------------- 245

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                          R +D+ ++F  +P  + +SWN++I G  Q G  +E +  F +ML 
Sbjct: 246 ---------------RVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLI 290

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             + PNH +    + A A++  L +GK  H   ++     +VF+ ++L+  YAKCG++  
Sbjct: 291 AKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRT 350

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +FDK+   ++V+W A+I GYA +G   +AI  F+RM + G++PN V  + +L AC+H
Sbjct: 351 ARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSH 410

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLV++ + YF+    +   +   EHYA + DLL R GR +EA EF+ D+  +P    W 
Sbjct: 411 AGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWS 470

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LL  C++H N+EL E  ++++  +DP+++ +YV+LSN  S AG+W +   +R  M++KG
Sbjct: 471 TLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKG 530

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           M + P CSWIEIK+KVH FV GD++H   D I   L+   EQ+
Sbjct: 531 MKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQM 573



 Score = 42.0 bits (97), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           ML  G  P+H+  P  + +   +  L  G+S H C ++     D++  N+L++ Y+K  S
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 291 MED 293
           +E+
Sbjct: 61  LEE 63



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           ML     P    F SV+ S T ++DL  G+ +H    ++G+  +++  +A++++Y K  S
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 159 IEEA 162
           +EE 
Sbjct: 61  LEEG 64


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 175/455 (38%), Positives = 269/455 (59%), Gaps = 12/455 (2%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     Q FD +   +VVS  TII  +A+    +EA  LF    + ++    FT+ +++ 
Sbjct: 229 KIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDV----FTWTAMVS 284

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                  +   ++L         + N    +A+L  Y++   +E A  +F+     NV +
Sbjct: 285 GYIQNRMVEEARELFDRMP----ERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVST 340

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + TMI G  +  +  +A  LF +MP R+ VSW AMI GYSQ+G + EA+ LF+ M REG 
Sbjct: 341 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGG 400

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             N S+   A+   A++ AL +GK  H   VK   +   FVGN+L+  Y KCGS+E++  
Sbjct: 401 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 460

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F ++  ++IV+WN +I GY+++G GEEA+ FFE M+  G++P+  T++ +L AC+HTGL
Sbjct: 461 LFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGL 520

Query: 357 VEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           V+KG  YF     +D G ++P  +HYACMVDLL R+G  +EA   + ++PF+P    W  
Sbjct: 521 VDKGRQYF-HTMTQDYG-VRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGT 578

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG  ++H N EL E AA +I A++PE+   YV+LSN  + +G+W +V  +R  M++KG+
Sbjct: 579 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 638

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            +VPG SWIEI++K H F  GD  H   DEI+A L
Sbjct: 639 KKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFL 673



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 181/429 (42%), Gaps = 55/429 (12%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTF 111
           +F     +FDE+P+ ++VS   +I  + +  +  +A  LF RM        N   S +  
Sbjct: 105 EFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQ 164

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
              +  +  + D    K   +W             +A+L  Y++ S +EEA  +F    N
Sbjct: 165 NGCVDDARRVFDRMPEKNDVSW-------------NALLSAYVQNSKLEEACVLFGSREN 211

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE- 230
             +VS+  ++ G +K+++  +A + F  M  R+VVSWN +I GY+Q G  +EA  LF E 
Sbjct: 212 WALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDES 271

Query: 231 ---------MLREGLVPNH---------STLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
                     +  G + N            +P     + N    G  +       K L  
Sbjct: 272 PVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFD 331

Query: 273 L----DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
           +    +V   N++I+ YA+CG + ++  +FDK+ +R+ V+W A+I GY+Q+G   EA+  
Sbjct: 332 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRL 391

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD--- 385
           F  M   G R N  +    L  C     +E G       +L   G        C V    
Sbjct: 392 FVLMEREGGRLNRSSFSSALSTCADVVALELGKQL--HGRLVKGGY----ETGCFVGNAL 445

Query: 386 --LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPE 441
             +  + G  +EA +   ++     I  W  ++ G   H   E  L  F + +   L P+
Sbjct: 446 LLMYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPD 504

Query: 442 DVSSYVMLS 450
           D +   +LS
Sbjct: 505 DATMVAVLS 513



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 107/243 (44%), Gaps = 51/243 (20%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T    CG    K S    +FD++P  + VS   +I  +++  H  EA+ LF  M     R
Sbjct: 346 TGYAQCG----KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGR 401

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
            +  +F S + +   +  L LGKQLH    K G ++  FVG+A+L +Y K  SIEEA  +
Sbjct: 402 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 461

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F++    ++VS+ TMI G                               YS+ G  EEA+
Sbjct: 462 FKEMAGKDIVSWNTMIAG-------------------------------YSRHGFGEEAL 490

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF----------------HACAVKF 269
             F  M REGL P+ +T+   + A ++   +  G+ +                +AC V  
Sbjct: 491 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDL 550

Query: 270 LGK 272
           LG+
Sbjct: 551 LGR 553



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 130/305 (42%), Gaps = 65/305 (21%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           Y++     EA RVF+     + VSY  MI G L+   FE A  LF EMP R++VSWN MI
Sbjct: 69  YMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMI 128

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
            GY +     +A  LF  M      P                                  
Sbjct: 129 KGYVRNRNLGKARELFERM------PER-------------------------------- 150

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            DV   N+++S YA+ G ++D+  VFD++ E+N V+WNA++  Y QN + EEA   F   
Sbjct: 151 -DVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF--- 206

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEK-----GYSYFSQAKLEDPGMLKPEHYACMVDLL 387
              G R N      + W C   G V+K        +F   K+ D        +  ++   
Sbjct: 207 ---GSRENWAL---VSWNCLLGGFVKKKKIVEARQFFDSMKVRD-----VVSWNTIITGY 255

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE--DVSS 445
           +++G   EA++   + P    +  W A++ G   +  VE     AR +    PE  +VS 
Sbjct: 256 AQNGEIDEARQLFDESPVHD-VFTWTAMVSGYIQNRMVE----EARELFDRMPERNEVSW 310

Query: 446 YVMLS 450
             ML+
Sbjct: 311 NAMLA 315


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 281/479 (58%), Gaps = 25/479 (5%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGSVIPSS 118
           +F+   D +++S   ++G F ++    +A +LF +M     +  N   S +  G  +  +
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 119 TALEDLNLGKQLHAWATKV------GL------------QSNVFVGSAILDLYIKLSSIE 160
             L D +  + +  W   V      G+            + N    +A++  Y++   ++
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
            A  +FE     N+ S+ TMI G  +      A K F  MP R+ VSW A+I GY+Q+G 
Sbjct: 315 IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGH 374

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            EEA+N+F+E+ ++G   N +T  CA+   A+IAAL +GK  H  AVK       FVGN+
Sbjct: 375 YEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNA 434

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L++ Y KCGS++++   F+ + E+++V+WN ++ GYA++G G +A+  FE M+  G++P+
Sbjct: 435 LLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPD 494

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEF 399
            +T++G+L AC+HTGL+++G  YF  +  +D G++   +HY CM+DLL R+GR +EA++ 
Sbjct: 495 EITMVGVLSACSHTGLLDRGTEYF-YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + ++PF PG   W ALLG  +IH N ELGE AA  +  ++P++   YV+LSN  + +G+W
Sbjct: 554 IRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRW 613

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            +   +R +M++ G+ +VPG SW+E+++K+H F  GD +H   + IYA L     ++RE
Sbjct: 614 VDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMRE 672



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 183/445 (41%), Gaps = 61/445 (13%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGS 113
           S++H VF+ +P  + VS   +I  + +   +  A  LF +M        N+  + +    
Sbjct: 67  SALH-VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC 125

Query: 114 VIPSSTALEDLNLGKQLHAWATKV-GLQSNVFVGSA-----------------ILDLYIK 155
            +  +  L DL   K + +W + + G   N +V  A                 +L  Y+ 
Sbjct: 126 RLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVH 185

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
              IEEA  +FE   + +++S+  ++ G +++++  DA  LF +MP R+ +SWN MI GY
Sbjct: 186 NGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGY 245

Query: 216 SQTGRNEEAVNLFIE---------------MLREGLVPNHSTL------PCAIIAAANIA 254
           +Q G   +A  LF E                ++ G++    T          +   A IA
Sbjct: 246 AQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIA 305

Query: 255 ALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
                K        F  +   ++   N++I+ Y + G +  +   FD + +R+ V+W A+
Sbjct: 306 GYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAI 365

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           I GYAQ+G  EEA+  F  ++ +G   N  T    L  C     +E G     QA     
Sbjct: 366 IAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGY 425

Query: 373 GMLKPEHYACMVD-----LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNV 425
           G        C V      +  + G   EA +    +  +  +  W  +L G   H     
Sbjct: 426 GT------GCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARHGFGRQ 478

Query: 426 ELGEFAARRILALDPEDVSSYVMLS 450
            L  F + +   + P++++   +LS
Sbjct: 479 ALTVFESMKTAGVKPDEITMVGVLS 503



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 5/194 (2%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +   + FD +P  + VS   II  +A+  HYEEA+ +F  +       +  TFG  + + 
Sbjct: 345 AQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTC 404

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             +  L LGKQ+H  A K+G  +  FVG+A+L +Y K  SI+EA   FE     +VVS+ 
Sbjct: 405 ADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWN 464

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           TM+ G  +      AL +F+ M    V    ++   ++   S TG  +     F  M ++
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 235 -GLVPNHSTLPCAI 247
            G++P      C I
Sbjct: 525 YGVIPTSKHYTCMI 538



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 166/364 (45%), Gaps = 39/364 (10%)

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           ST + + +    LH + T     S  +  +A++  Y++ S    A  +F+     ++ S+
Sbjct: 57  STHMRNGHCDSALHVFNTMPRRSSVSY--NAMISGYLRNSKFNLARNLFDQMPERDLFSW 114

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
             M+ G ++  R  DA +LF  MP ++VVSWN+++ GY+Q G  +EA  +F  M      
Sbjct: 115 NVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM------ 168

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK--LDVFVGNSLISFYAKCGSMEDSL 295
           P  +++    + AA +     G+   AC + F  K   D+   N L+  + +   + D+ 
Sbjct: 169 PEKNSISWNGLLAAYVHN---GRIEEACLL-FESKSDWDLISWNCLMGGFVRKKKLGDAR 224

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +FDK+  R+ ++WN +I GYAQ G   +A   F+      +     T   ++      G
Sbjct: 225 WLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNG 280

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEH----YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           ++++  ++F +          PE     Y  M+    ++ +   A+E    +P    I  
Sbjct: 281 MLDEAKTFFDEM---------PEKNEVSYNAMIAGYVQTKKMDIARELFESMPC-RNISS 330

Query: 412 WKALLGGCQIHSNVELGEFA-ARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREM 469
           W  ++ G       ++G+ A AR+   + P+ D  S+  +    + +G ++   N+  E+
Sbjct: 331 WNTMITGYG-----QIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 470 KEKG 473
           K+ G
Sbjct: 386 KQDG 389



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 54/303 (17%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P+++ +   I   ++    + AL +F  MP R+ VS+NAMI GY +  +   A NLF +
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M                                          D+F  N +++ Y +   
Sbjct: 106 MPER---------------------------------------DLFSWNVMLTGYVRNCR 126

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + D+  +FD + E+++V+WN+++ GYAQNG  +EA E F+ M       N ++  GLL A
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAA 182

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
             H G +E+    F      D  ++    + C++    R  +  +A+     +P    I 
Sbjct: 183 YVHNGRIEEACLLFESK--SDWDLIS---WNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREM 469
            W  ++ G      +      ARR+    P  DV ++  + +     G  D       EM
Sbjct: 238 -WNTMISGYAQGGGLS----QARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM 292

Query: 470 KEK 472
            EK
Sbjct: 293 PEK 295



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 39/181 (21%)

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           +  +++    + A  VF      + VSY  MI G L+  +F  A  LF +MP R++ SWN
Sbjct: 56  ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWN 115

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
            M+ GY +  R  +A  LF       L+P                               
Sbjct: 116 VMLTGYVRNCRLGDARRLF------DLMPEK----------------------------- 140

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
               DV   NSL+S YA+ G ++++  VFD + E+N ++WN ++  Y  NGR EEA   F
Sbjct: 141 ----DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196

Query: 330 E 330
           E
Sbjct: 197 E 197



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 38/143 (26%)

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           +TGL++ G  YF     E       +HY CM+DLL R  R +E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG---------------- 819

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALLG  +IH N ELGE AA+    + P++                    S I + M++ 
Sbjct: 820 -ALLGASRIHGNTELGEKAAQMFFKMGPQN--------------------SGISK-MRDV 857

Query: 473 GMTRVPGCSWIEIKSKVHVFVTG 495
           G+ +VPG SW E+++K+H F  G
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVG 880


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 281/479 (58%), Gaps = 25/479 (5%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGSVIPSS 118
           +F+   D +++S   ++G F ++    +A +LF +M     +  N   S +  G  +  +
Sbjct: 195 LFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQA 254

Query: 119 TALEDLNLGKQLHAWATKV------GL------------QSNVFVGSAILDLYIKLSSIE 160
             L D +  + +  W   V      G+            + N    +A++  Y++   ++
Sbjct: 255 RRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMD 314

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
            A  +FE     N+ S+ TMI G  +      A K F  MP R+ VSW A+I GY+Q+G 
Sbjct: 315 IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGH 374

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            EEA+N+F+E+ ++G   N +T  CA+   A+IAAL +GK  H  AVK       FVGN+
Sbjct: 375 YEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNA 434

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L++ Y KCGS++++   F+ + E+++V+WN ++ GYA++G G +A+  FE M+  G++P+
Sbjct: 435 LLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPD 494

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEF 399
            +T++G+L AC+HTGL+++G  YF  +  +D G++   +HY CM+DLL R+GR +EA++ 
Sbjct: 495 EITMVGVLSACSHTGLLDRGTEYF-YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDL 553

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + ++PF PG   W ALLG  +IH N ELGE AA  +  ++P++   YV+LSN  + +G+W
Sbjct: 554 IRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRW 613

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            +   +R +M++ G+ +VPG SW+E+++K+H F  GD +H   + IYA L     ++RE
Sbjct: 614 VDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMRE 672



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/445 (23%), Positives = 183/445 (41%), Gaps = 61/445 (13%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGS 113
           S++H VF+ +P  + VS   +I  + +   +  A  LF +M        N+  + +    
Sbjct: 67  SALH-VFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNC 125

Query: 114 VIPSSTALEDLNLGKQLHAWATKV-GLQSNVFVGSA-----------------ILDLYIK 155
            +  +  L DL   K + +W + + G   N +V  A                 +L  Y+ 
Sbjct: 126 RLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVH 185

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
              IEEA  +FE   + +++S+  ++ G +++++  DA  LF +MP R+ +SWN MI GY
Sbjct: 186 NGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGY 245

Query: 216 SQTGRNEEAVNLFIE---------------MLREGLVPNHSTL------PCAIIAAANIA 254
           +Q G   +A  LF E                ++ G++    T          +   A IA
Sbjct: 246 AQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIA 305

Query: 255 ALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
                K        F  +   ++   N++I+ Y + G +  +   FD + +R+ V+W A+
Sbjct: 306 GYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAI 365

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           I GYAQ+G  EEA+  F  ++ +G   N  T    L  C     +E G     QA     
Sbjct: 366 IAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGY 425

Query: 373 GMLKPEHYACMVD-----LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNV 425
           G        C V      +  + G   EA +    +  +  +  W  +L G   H     
Sbjct: 426 GT------GCFVGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARHGFGRQ 478

Query: 426 ELGEFAARRILALDPEDVSSYVMLS 450
            L  F + +   + P++++   +LS
Sbjct: 479 ALTVFESMKTAGVKPDEITMVGVLS 503



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 5/194 (2%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +   + FD +P  + VS   II  +A+  HYEEA+ +F  +       +  TFG  + + 
Sbjct: 345 AQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTC 404

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             +  L LGKQ+H  A K+G  +  FVG+A+L +Y K  SI+EA   FE     +VVS+ 
Sbjct: 405 ADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWN 464

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           TM+ G  +      AL +F+ M    V    ++   ++   S TG  +     F  M ++
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 235 -GLVPNHSTLPCAI 247
            G++P      C I
Sbjct: 525 YGVIPTSKHYTCMI 538



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 165/363 (45%), Gaps = 37/363 (10%)

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           ST + + +    LH + T     S  +  +A++  Y++ S    A  +F+     ++ S+
Sbjct: 57  STHMRNGHCDSALHVFNTMPRRSSVSY--NAMISGYLRNSKFNLARNLFDQMPERDLFSW 114

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
             M+ G ++  R  DA +LF  MP ++VVSWN+++ GY+Q G  +EA  +F  M      
Sbjct: 115 NVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM------ 168

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAV-KFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
           P  +++    + AA +     G+   AC + +     D+   N L+  + +   + D+  
Sbjct: 169 PEKNSISWNGLLAAYVHN---GRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARW 225

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +FDK+  R+ ++WN +I GYAQ G   +A   F+      +     T   ++      G+
Sbjct: 226 LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGM 281

Query: 357 VEKGYSYFSQAKLEDPGMLKPEH----YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           +++  ++F +          PE     Y  M+    ++ +   A+E    +P    I  W
Sbjct: 282 LDEAKTFFDEM---------PEKNEVSYNAMIAGYVQTKKMDIARELFESMPC-RNISSW 331

Query: 413 KALLGGCQIHSNVELGEFA-ARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMK 470
             ++ G       ++G+ A AR+   + P+ D  S+  +    + +G ++   N+  E+K
Sbjct: 332 NTMITGYG-----QIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK 386

Query: 471 EKG 473
           + G
Sbjct: 387 QDG 389



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 54/303 (17%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P+++ +   I   ++    + AL +F  MP R+ VS+NAMI GY +  +   A NLF +
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M                                          D+F  N +++ Y +   
Sbjct: 106 MPER---------------------------------------DLFSWNVMLTGYVRNCR 126

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + D+  +FD + E+++V+WN+++ GYAQNG  +EA E F+ M       N ++  GLL A
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAA 182

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
             H G +E+    F      D  ++    + C++    R  +  +A+     +P    I 
Sbjct: 183 YVHNGRIEEACLLFESKS--DWDLIS---WNCLMGGFVRKKKLGDARWLFDKMPVRDAIS 237

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREM 469
            W  ++ G      +      ARR+    P  DV ++  + +     G  D       EM
Sbjct: 238 -WNTMISGYAQGGGLS----QARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM 292

Query: 470 KEK 472
            EK
Sbjct: 293 PEK 295



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 39/181 (21%)

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           +  +++    + A  VF      + VSY  MI G L+  +F  A  LF +MP R++ SWN
Sbjct: 56  ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWN 115

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
            M+ GY +  R  +A  LF       L+P                               
Sbjct: 116 VMLTGYVRNCRLGDARRLF------DLMPEK----------------------------- 140

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
               DV   NSL+S YA+ G ++++  VFD + E+N ++WN ++  Y  NGR EEA   F
Sbjct: 141 ----DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196

Query: 330 E 330
           E
Sbjct: 197 E 197


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 262/450 (58%), Gaps = 33/450 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +  ++FDE+P  +VVS   +I  +A+  +Y+EA+ LF  M+  N+RP E T  +V+ +  
Sbjct: 175 NAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 234

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               + LG+Q+H+W    G  SN+ + +A++DLY K   +E A                 
Sbjct: 235 QSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETA----------------- 277

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CGL            F+ +P+++V+SWN +IGGY+     +EA+ LF EMLR G  PN
Sbjct: 278 --CGL------------FEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 323

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLV 297
             T+   + A A++ A+ +G+  H    K L  +     +  SLI  YAKCG +E +  V
Sbjct: 324 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQV 383

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +  +++ +WNA+I G+A +GR + + + F RMR NGI P+ +T +GLL AC+H+G++
Sbjct: 384 FNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGML 443

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + G   F     +     K EHY CM+DLL  SG FKEA+E +  +  +P    W +LL 
Sbjct: 444 DLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLK 503

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H NVELGE  A+ ++ ++PE+  SYV+LSN  + AG+W+ V+N R  + +KGM +V
Sbjct: 504 ACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKV 563

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           PGCS IEI S VH F+ GD+ H  N EIY 
Sbjct: 564 PGCSSIEIDSVVHEFIIGDKFHPRNREIYG 593



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 222/411 (54%), Gaps = 5/411 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ + + N++   T+    A       A+ L+  M+ L + P+ +TF  ++ S    + 
Sbjct: 47  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 106

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+H    K+G   +++V ++++ +Y++   +E+A +VF+++ + +VVSYT +I G
Sbjct: 107 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKG 166

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R   E+A K+F E+P ++VVSWNAMI GY++TG  +EA+ LF +M++  + P+ ST+
Sbjct: 167 YASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 226

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A   ++ +G+  H+         ++ + N+LI  Y+KCG +E +  +F+ L  
Sbjct: 227 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPY 286

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H G ++ G   
Sbjct: 287 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 346

Query: 364 FSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                    G+         ++D+ ++ G   EA   +++      +  W A++ G  +H
Sbjct: 347 HVYIDKRLKGVANASSLRTSLIDMYAKCGDI-EAAHQVFNSILHKSLSSWNAMIFGFAMH 405

Query: 423 --SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
             ++     F+  R   ++P+D+ ++V L +A S +G  D   +I R M +
Sbjct: 406 GRADASFDIFSRMRKNGIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMTQ 455



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 124/260 (47%), Gaps = 39/260 (15%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+ +   N++ WN M  G++ +     A+ L++ M+  GL+PN  T P  + + A 
Sbjct: 44  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 103

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------- 304
             A   G+  H   +K    LD++V  SLIS Y + G +ED+  VFD+   R        
Sbjct: 104 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTAL 163

Query: 305 -----------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                  ++V+WNA+I GYA+ G  +EA+E F+ M    +RP+ 
Sbjct: 164 IKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 223

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM---LKPEHYACMVDLLSRSGRFKEAKE 398
            T++ ++ AC  +G +E G    S   ++D G    LK  +   ++DL S+ G  + A  
Sbjct: 224 STMVTVVSACAQSGSIELGRQVHSW--IDDHGFGSNLKIVN--ALIDLYSKCGELETACG 279

Query: 399 FLYDLPFDPGIGFWKALLGG 418
               LP+   I  W  L+GG
Sbjct: 280 LFEGLPYKDVIS-WNTLIGG 298


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 168/460 (36%), Positives = 276/460 (60%), Gaps = 37/460 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D      ++F E+ + + +S T++I  F +     +AI +F  M L N++  ++T
Sbjct: 222 CGRVEDS----KRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYT 277

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           FGSV+ +   +  L  GKQ+HA+  +   + N+FV SA++D+Y K  +I+ A  VF    
Sbjct: 278 FGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVF---- 333

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                      ++M  +NVVSW AM+ GY Q G +EEAV  F +
Sbjct: 334 ---------------------------KKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSD 366

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M + G+ P+  TL   I + AN+A+L  G  FHA A+       + V N+L++ Y KCGS
Sbjct: 367 MQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGS 426

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +EDS  +F++++ ++ VTW A++ GYAQ G+  E I  FE M  +G++P+ VT +G+L A
Sbjct: 427 IEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSA 486

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C+  GLVEKG   F ++ + + G++   +HY CM+DL SR+GR +EA+ F+  +PF P  
Sbjct: 487 CSRAGLVEKGNQIF-ESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDA 545

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W  LL  C+ + N+++G++AA  ++ LDP + +SYV+LS+  +  GKW+ V+ +R++M
Sbjct: 546 ISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDM 605

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           ++KG+ + PGCSWI+ K++VHVF   D+++  +D+IY+ L
Sbjct: 606 RDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSEL 645



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 224/414 (54%), Gaps = 9/414 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRP 106
           +S  S+  + S +  +FD +P  + VS  ++I  +A      +++  ++ ML  +     
Sbjct: 82  LSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNL 141

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           +  TF +++  ++    + LG+Q+H    K G  S VFVGS ++D+Y K+  I  A +VF
Sbjct: 142 NRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVF 201

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
           ++    NVV Y T+I GL++  R ED+ +LF EM  R+ +SW +MI G++Q G + +A++
Sbjct: 202 DELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAID 261

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           +F EM  E L  +  T    + A   + AL  GK  HA  ++   K ++FV ++L+  Y 
Sbjct: 262 IFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYC 321

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KC +++ +  VF K+T +N+V+W A++ GY QNG  EEA++ F  M+  GI P+  TL  
Sbjct: 322 KCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGS 381

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPF 405
           ++ +C +   +E+G  +   A+    G++     +  +V L  + G  +++     ++ F
Sbjct: 382 VISSCANLASLEEGAQF--HARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISF 439

Query: 406 DPGIGFWKALLGG-CQI-HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
              +  W AL+ G  Q   +N  +G F +     L P+ V +++ + +A S AG
Sbjct: 440 KDEVT-WTALVSGYAQFGKANETIGLFESMLAHGLKPDKV-TFIGVLSACSRAG 491



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 166/367 (45%), Gaps = 41/367 (11%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
            K LH+   K       F+ + ++  Y KL SI  A +VF+   +PN+ S+ T++    K
Sbjct: 28  AKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSK 87

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE--GLVPNHSTLP 244
             R  +   LF  MP R+ VSWN++I GY+  G   ++V  +  ML+       N  T  
Sbjct: 88  LGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFS 147

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK----------------- 287
             +I A+    + +G+  H   VKF     VFVG+ L+  Y+K                 
Sbjct: 148 TLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEK 207

Query: 288 --------------CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
                         CG +EDS  +F ++ ER+ ++W ++I G+ QNG   +AI+ F  M+
Sbjct: 208 NVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMK 267

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
           +  ++ +  T   +L AC     +++G   ++Y  +   +D   +     + +VD+  + 
Sbjct: 268 LENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVA----SALVDMYCKC 323

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLG-GCQIHSNVELGEFAARRILALDPEDVSSYVML 449
              K A+     +     + +   L+G G   +S   +  F+  +   ++P+D +   ++
Sbjct: 324 KNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVI 383

Query: 450 SNALSVA 456
           S+  ++A
Sbjct: 384 SSCANLA 390


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 169/470 (35%), Positives = 274/470 (58%), Gaps = 40/470 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS         ++FDE+P  ++VS T++I  +A+     +A+ LF RML     P+EFT
Sbjct: 122 CGS----LEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             S++     +   N G+Q+HA   K G  SNVFVGS+++D+Y +               
Sbjct: 178 LSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYAR--------------- 222

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                      CG L      +A+ +F ++  +N VSWNA+I GY++ G  EEA+ LF+ 
Sbjct: 223 -----------CGYLG-----EAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVR 266

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M REG  P   T    + + +++  L  GK  HA  +K   KL  +VGN+L+  YAK GS
Sbjct: 267 MQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGS 326

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + D+  VFDKL + ++V+ N+++ GYAQ+G G+EA + F+ M   GI PN +T L +L A
Sbjct: 327 IRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTA 386

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C+H  L+++G  YF   +  +   ++P+  HYA +VDLL R+G   +AK F+ ++P +P 
Sbjct: 387 CSHARLLDEGKHYFGLMRKYN---IEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPT 443

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           +  W ALLG  ++H N E+G +AA+R+  LDP    ++ +L+N  + AG+W++V+ +R+ 
Sbjct: 444 VAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKI 503

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           MK+ G+ + P CSW+E+++ VHVFV  D  H   ++I+ +     ++I+E
Sbjct: 504 MKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKE 553



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 175/353 (49%), Gaps = 41/353 (11%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           ++ P    + +++   T L  L  GK +H        + ++ + +++L +Y +  S+E A
Sbjct: 69  SLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGA 128

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            R                               LF EMPHR++VSW +MI GY+Q  R  
Sbjct: 129 RR-------------------------------LFDEMPHRDMVSWTSMITGYAQNDRAS 157

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A+ LF  ML +G  PN  TL   +     +A+   G+  HAC  K+    +VFVG+SL+
Sbjct: 158 DALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLV 217

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YA+CG + +++LVFDKL  +N V+WNA+I GYA+ G GEEA+  F RM+  G RP   
Sbjct: 218 DMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEF 277

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T   LL +C+  G +E+G  +     ++    L       ++ + ++SG  ++A E ++D
Sbjct: 278 TYSALLSSCSSMGCLEQG-KWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDA-EKVFD 335

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRI-----LALDPEDVSSYVMLS 450
                 +    ++L G   H    LG+ AA++        ++P D++   +L+
Sbjct: 336 KLVKVDVVSCNSMLIGYAQHG---LGKEAAQQFDEMIRFGIEPNDITFLSVLT 385


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/447 (38%), Positives = 260/447 (58%), Gaps = 31/447 (6%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           +VVS TT+I  + + +  ++A+  F +ML   IR  E    + + +   L+ L  G+Q+H
Sbjct: 538 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 597

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A A   G  S++   +A++ LY K  +IEEA   FE T   + ++               
Sbjct: 598 AQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIA--------------- 642

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
                           WNA++ G+ Q+G NEEA+ +F  M REG+  N+ T   A+ AA+
Sbjct: 643 ----------------WNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAAS 686

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
             A +  GK  HA   K     +  V N++IS YAKCGS+ D+   F +L+ +N V+WNA
Sbjct: 687 ETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNA 746

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I  Y+++G G EA++ F++M  + +RPN VTL+G+L AC+H GLV+KG  YF     E 
Sbjct: 747 MINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEY 806

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
               KPEHY C+VD+L+R+G    AK+F+ ++P +P    W+ LL  C +H N+E+GEFA
Sbjct: 807 GLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFA 866

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A  +L L+PED ++YV+LSN  +V  KWD     R++MKEKG+ + PG SWIE+K+ +H 
Sbjct: 867 AHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 926

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           F  GD+NH + DEI+   +  T++  E
Sbjct: 927 FYVGDQNHPLADEIHEYFKDLTKRASE 953



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 188/435 (43%), Gaps = 76/435 (17%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S   +F  +   + V+  T+I   ++  + E+A+ LF RM L  + P   T  S++ + +
Sbjct: 324 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACS 383

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF------------- 166
           +   L  G+QLHA+ TK+G  SN  +  A+L+LY K S IE A   F             
Sbjct: 384 SDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNV 443

Query: 167 --------EDTHN--------------PNVVSYTTM------------------------ 180
                   +D  N              PN  +Y ++                        
Sbjct: 444 MLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTS 503

Query: 181 ------ICGLL-----KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                 +C +L     K  + + A  +      ++VVSW  MI GY+Q   +++A+  F 
Sbjct: 504 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR 563

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +ML  G+  +   L  A+ A A + AL  G+  HA A       D+   N+L++ Y+KCG
Sbjct: 564 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCG 623

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           ++E++ L F++    + + WNA++ G+ Q+G  EEA+  F RM   GI  N  T    + 
Sbjct: 624 NIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVK 683

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDP 407
           A + T  +++G      A +   G    E   C  ++ + ++ G   +AK+   +L    
Sbjct: 684 AASETANMKQGKQV--HAVITKTGY-DSETEVCNAIISMYAKCGSISDAKKQFLELSMKN 740

Query: 408 GIGFWKALLGGCQIH 422
            +  W A++     H
Sbjct: 741 EVS-WNAMINAYSKH 754



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 175/392 (44%), Gaps = 35/392 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +   +  S   +I   +K     EAI LF  M +L I P+ + F SV+ +   +E
Sbjct: 226 RVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 285

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L +G+QLH    K+G  S+ +V +A++ LY  L S+  A  +F +              
Sbjct: 286 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSN-------------- 331

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            M  R+ V++N +I G SQ G  E+A+ LF  M  +GL P+ +T
Sbjct: 332 -----------------MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNT 374

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   ++A ++   L  G+  HA   K     +  +  +L++ YAKC  +E +L  F +  
Sbjct: 375 LASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETE 434

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             N+V WN ++  Y        +   F +M+I  I PN  T   +L  C   G +E G  
Sbjct: 435 VENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 494

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
             SQ  ++    L     + ++D+ ++ G+   A + L        +  W  ++ G   +
Sbjct: 495 IHSQI-IKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVS-WTTMIAGYTQY 552

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           +  +      R++  LD    S  V L+NA+S
Sbjct: 553 NFDDKALTTFRQM--LDRGIRSDEVGLTNAVS 582



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 146/299 (48%), Gaps = 32/299 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+P+  + +   +I   A +    +   LF RM+  N+ P+E TF  V+ +     
Sbjct: 124 KVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGS 183

Query: 123 -DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
              ++ +Q+HA     GL  +  V + ++DLY +   ++ A RVF               
Sbjct: 184 VAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVF--------------- 228

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                     D L L      ++  SW AMI G S+     EA+ LF +M   G++P   
Sbjct: 229 ----------DGLYL------KDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPY 272

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A   I +L +G+  H   +K     D +V N+L+S Y   GS+  +  +F  +
Sbjct: 273 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNM 332

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++R+ VT+N +I G +Q G GE+A+E F+RM+++G+ P+  TL  L+ AC+  G +  G
Sbjct: 333 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSG 391



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 5/219 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  S+       +  F++    + ++   ++  F +  + EEA+ +F+RM    I  + 
Sbjct: 616 VTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNN 675

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTFGS + +++   ++  GKQ+HA  TK G  S   V +AI+ +Y K  SI +A + F +
Sbjct: 676 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLE 735

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEA 224
               N VS+  MI    K     +AL  F +M H NV    V+   ++   S  G  ++ 
Sbjct: 736 LSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 795

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSF 262
           +  F  M  E GL P      C +        L   K F
Sbjct: 796 IEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDF 834



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 35/260 (13%)

Query: 104 IRPSEFTFGSVIPSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           IRP+  T   ++         L+ G++LH+   K+G  +N  +   +LD Y+    ++ A
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            +VF+                               EMP R + +WN MI   +    + 
Sbjct: 123 LKVFD-------------------------------EMPERTIFTWNKMIKELASRSLSG 151

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAA-ANIAALGMGKSFHACAV-KFLGKLDVFVGNS 280
           +   LF  M+ E + PN  T    + A      A  + +  HA  + + LGK    V N 
Sbjct: 152 KVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGK-STIVCNP 210

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI  Y++ G ++ +  VFD L  ++  +W A+I G ++N    EAI  F  M + GI P 
Sbjct: 211 LIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPT 270

Query: 341 GVTLLGLLWACNHTGLVEKG 360
                 +L AC     +E G
Sbjct: 271 PYAFSSVLSACKKIESLEIG 290



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 6/187 (3%)

Query: 235 GLVPNHSTLPCAIIAAANI-AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           G+ PNH TL   +        +L  G+  H+  +K     +  +   L+ FY   G ++ 
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +L VFD++ ER I TWN +I   A      +    F RM    + PN  T  G+L AC  
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC-R 180

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
            G V         A++   G+ K     C  ++DL SR+G    A+  ++D  +      
Sbjct: 181 GGSVAFDVVEQIHARIIYQGLGKST-IVCNPLIDLYSRNGFVDRARR-VFDGLYLKDHSS 238

Query: 412 WKALLGG 418
           W A++ G
Sbjct: 239 WVAMISG 245


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 261/447 (58%), Gaps = 31/447 (6%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           +VVS TT+I  + + +  ++A+  F +ML   IR  E    + + +   L+ L  G+Q+H
Sbjct: 515 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 574

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A A   G  S++   +A++ LY +   IEE+   FE T   + ++               
Sbjct: 575 AQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA--------------- 619

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
                           WNA++ G+ Q+G NEEA+ +F+ M REG+  N+ T   A+ AA+
Sbjct: 620 ----------------WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAAS 663

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
             A +  GK  HA   K     +  V N+LIS YAKCGS+ D+   F +++ +N V+WNA
Sbjct: 664 ETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNA 723

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I  Y+++G G EA++ F++M  + +RPN VTL+G+L AC+H GLV+KG +YF     E 
Sbjct: 724 IINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEY 783

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
               KPEHY C+VD+L+R+G    AKEF+ ++P  P    W+ LL  C +H N+E+GEFA
Sbjct: 784 GLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFA 843

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A  +L L+PED ++YV+LSN  +V+ KWD     R++MKEKG+ + PG SWIE+K+ +H 
Sbjct: 844 AHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 903

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           F  GD+NH + DEI+   +  T++  E
Sbjct: 904 FYVGDQNHPLADEIHEYFQDLTKRASE 930



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 164/371 (44%), Gaps = 70/371 (18%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S   +F  +   + V+  T+I   ++  + E+A+ LF RM L  + P   T  S++ + +
Sbjct: 301 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACS 360

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF------------- 166
           A   L  G+QLHA+ TK+G  SN  +  A+L+LY K + IE A   F             
Sbjct: 361 ADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNV 420

Query: 167 --------EDTHN--------------PNVVSYTTM------------------------ 180
                   +D  N              PN  +Y ++                        
Sbjct: 421 MLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN 480

Query: 181 ------ICGLL-----KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                 +C +L     K  + + A  +      ++VVSW  MI GY+Q   +++A+  F 
Sbjct: 481 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR 540

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +ML  G+  +   L  A+ A A + AL  G+  HA A       D+   N+L++ Y++CG
Sbjct: 541 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 600

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            +E+S L F++    + + WNA++ G+ Q+G  EEA+  F RM   GI  N  T    + 
Sbjct: 601 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 660

Query: 350 ACNHTGLVEKG 360
           A + T  +++G
Sbjct: 661 AASETANMKQG 671



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 182/420 (43%), Gaps = 45/420 (10%)

Query: 43  AIRTDSVSCGSESDKFSS------VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLF 96
            +R  +V C    D +S         +VFD +   +  S   +I   +K     EAI LF
Sbjct: 177 GLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLF 236

Query: 97  SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL 156
             M +L I P+ + F SV+ +   +E L +G+QLH    K+G  S+ +V +A++ LY  L
Sbjct: 237 CDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHL 296

Query: 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216
            ++  A  +F +                               M  R+ V++N +I G S
Sbjct: 297 GNLISAEHIFSN-------------------------------MSQRDAVTYNTLINGLS 325

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
           Q G  E+A+ LF  M  +GL P+ +TL   ++A +    L  G+  HA   K     +  
Sbjct: 326 QCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNK 385

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +  +L++ YAKC  +E +L  F +    N+V WN ++  Y        +   F +M+I  
Sbjct: 386 IEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEE 445

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFK 394
           I PN  T   +L  C   G +E G    SQ    +    +   Y C  ++D+ ++ G+  
Sbjct: 446 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN---FQLNAYVCSVLIDMYAKLGKLD 502

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
            A + L        +  W  ++ G   ++  +      R++  LD    S  V L+NA+S
Sbjct: 503 TAWDILIRFAGKDVVS-WTTMIAGYTQYNFDDKALTTFRQM--LDRGIRSDEVGLTNAVS 559



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 145/299 (48%), Gaps = 32/299 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+P+  + +   +I   A ++   E   LF RM+  N+ P+E TF  V+ +     
Sbjct: 101 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 160

Query: 123 -DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
              ++ +Q+HA     GL+ +  V + ++DLY +   ++ A RVF+     +  S+  MI
Sbjct: 161 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 220

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            GL K E                                  EA+ LF +M   G++P   
Sbjct: 221 SGLSKNE-------------------------------CEAEAIRLFCDMYVLGIMPTPY 249

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A   I +L +G+  H   +K     D +V N+L+S Y   G++  +  +F  +
Sbjct: 250 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 309

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++R+ VT+N +I G +Q G GE+A+E F+RM ++G+ P+  TL  L+ AC+  G + +G
Sbjct: 310 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 368



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 108/260 (41%), Gaps = 35/260 (13%)

Query: 104 IRPSEFTFGSVIPSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           IRP+  T   ++         L+ G++LH+   K+GL SN  +   + D Y         
Sbjct: 40  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFY--------- 90

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                                L K + +  A K+F EMP R + +WN MI   +      
Sbjct: 91  ---------------------LFKGDLY-GAFKVFDEMPERTIFTWNKMIKELASRNLIG 128

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAA-ANIAALGMGKSFHACAVKFLGKLD-VFVGNS 280
           E   LF+ M+ E + PN  T    + A      A  + +  HA  + + G  D   V N 
Sbjct: 129 EVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHA-RILYQGLRDSTVVCNP 187

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI  Y++ G ++ +  VFD L  ++  +W A+I G ++N    EAI  F  M + GI P 
Sbjct: 188 LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPT 247

Query: 341 GVTLLGLLWACNHTGLVEKG 360
                 +L AC     +E G
Sbjct: 248 PYAFSSVLSACKKIESLEIG 267



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  S   K    +  F++    + ++   ++  F +  + EEA+ +F RM    I  + 
Sbjct: 593 VTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNN 652

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTFGS + +++   ++  GKQ+HA  TK G  S   V +A++ +Y K  SI +A + F +
Sbjct: 653 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 712

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEA 224
               N VS+  +I    K     +AL  F +M H NV    V+   ++   S  G  ++ 
Sbjct: 713 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 772

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSF 262
           +  F  M  E GL P      C +        L   K F
Sbjct: 773 IAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEF 811



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 12/190 (6%)

Query: 235 GLVPNHSTLPCAIIAAANI-AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           G+ PNH TL   +        +L  G+  H+  +K     +  +   L  FY   G +  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VFD++ ER I TWN +I   A      E    F RM    + PN  T  G+L AC  
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 354 TG----LVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
                 +VE+ ++      L D  ++  P     ++DL SR+G    A+     L     
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNP-----LIDLYSRNGFVDLARRVFDGLRLKDH 213

Query: 409 IGFWKALLGG 418
              W A++ G
Sbjct: 214 SS-WVAMISG 222


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 175/498 (35%), Positives = 281/498 (56%), Gaps = 38/498 (7%)

Query: 51  CG-SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           CG +   K +   ++FD++P  NVV+   +I  + +  H +EAI LF  M   N      
Sbjct: 241 CGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKN----SI 296

Query: 110 TFGSVIPSSTALEDLNLGKQL------------------HAWATKVGLQSNVFVGSAILD 151
           ++ +VI     +  L+  +QL                  +    ++     +F   +I D
Sbjct: 297 SWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRD 356

Query: 152 L---------YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
           +         Y +   ++EA  +F+     ++VS+ TM+    +  + + A+K+F+EM  
Sbjct: 357 VVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKE 416

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           +N+VSWN++I G +Q G   +A+  F+ M  EG  P+ ST  C + + A++AAL +GK  
Sbjct: 417 KNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQL 476

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H   +K     D+FV N+LI+ YAKCGS+  + L+F  +   ++V+WN++I  YA NG G
Sbjct: 477 HQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNG 536

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS---QAKLEDPGMLKPEH 379
            EA++ F +M + G+ P+ VT +G+L AC+H GL+++G   F    QA   +P     EH
Sbjct: 537 REALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP---LAEH 593

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
           YACMVDLL R+GR +EA + +  +  +   G W ALLG C+IH N+EL +FAA ++L  +
Sbjct: 594 YACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFE 653

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           P   S+YV+LSN  + AG+WD V+ +RR MKEKG  + PG SWIE++++VH F++ D  H
Sbjct: 654 PHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAH 713

Query: 500 HMNDEIYAVLRSCTEQIR 517
               E+  +LRS T  +R
Sbjct: 714 PRAVELCHILRSLTAHMR 731



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 165/333 (49%), Gaps = 42/333 (12%)

Query: 49  VSCGSESDKFSSVHQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           ++C + + + +    +F+ +P   N V    ++  +AK   ++EA  LF  M   ++   
Sbjct: 115 ITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDL--- 171

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             ++ S++   T   ++ LG Q      +   + +V   + ++D ++++  +  +   FE
Sbjct: 172 -VSWNSMLTGYTRNGEMRLGLQFF----EEMAERDVVSWNLMVDGFVEVGDLNSSWEFFE 226

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
              NPN VS+ TM+CG  +  +  +A +LF +MP RNVV+WNAMI  Y Q    +EA++L
Sbjct: 227 KIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISL 286

Query: 228 FIEM---------------LREGLVPNHSTL----PCAIIAA--ANIAALGMGKSFHACA 266
           F+EM               +R G +     L    P   +AA  A I+     K      
Sbjct: 287 FMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDAR 346

Query: 267 VKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
             F  +   DV   N++I+ Y++CG M+++L +F ++ +++IV+WN ++  YAQ G+ + 
Sbjct: 347 QIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDA 406

Query: 325 AIEFFERMR----------INGIRPNGVTLLGL 347
           AI+ FE M+          I+G+  NG  L  L
Sbjct: 407 AIKIFEEMKEKNIVSWNSLISGLTQNGSYLDAL 439



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 141/324 (43%), Gaps = 38/324 (11%)

Query: 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
           K   I+EA +VF+   + N V++ +MI    K  R  DA +LF  MP RN+VSWN+MI  
Sbjct: 27  KSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAA 86

Query: 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPC-----AIIAAANIAALGMGKSFHACAVKF 269
           Y    R EEA  LF +M    L      + C      +  A N+  L   K    C    
Sbjct: 87  YLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCC--- 143

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
                    N++++ YAK    +++  +FD +  +++V+WN+++ GY +NG     ++FF
Sbjct: 144 ---------NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFF 194

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
           E M    +    + + G +      G +   + +F   K+ +P  +    +  M+   +R
Sbjct: 195 EEMAERDVVSWNLMVDGFV----EVGDLNSSWEFFE--KIPNPNTVS---WVTMLCGFAR 245

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGG----CQIHSNVELGEFAARRILALDPEDVSS 445
            G+  EA+     +P    +  W A++      C +   + L        + +  ++  S
Sbjct: 246 FGKIAEARRLFDQMPIRNVVA-WNAMIAAYVQNCHVDEAISL-------FMEMPEKNSIS 297

Query: 446 YVMLSNALSVAGKWDNVSNIRREM 469
           +  + N     GK D    +  +M
Sbjct: 298 WTTVINGYVRMGKLDEARQLLNQM 321



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 159/365 (43%), Gaps = 47/365 (12%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
             N    ++++  + K   I +A ++F+     N+VS+ +MI   L  +R E+A +LF +
Sbjct: 43  HKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDK 102

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           MP R++ SW  MI  Y++ G   +A NLF       L+P      C     A +A     
Sbjct: 103 MPTRDLYSWTLMITCYTRNGELAKARNLF------NLLPYKWNPVC---CNAMVAGYAKN 153

Query: 260 KSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           + F      F  +   D+   NS+++ Y + G M   L  F+++ ER++V+WN ++ G+ 
Sbjct: 154 RQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFV 213

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP----- 372
           + G    + EFFE++      PN V+ + +L      G + +    F Q  + +      
Sbjct: 214 EVGDLNSSWEFFEKIP----NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNA 269

Query: 373 -----------------GMLKPEH----YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
                             M  PE     +  +++   R G+  EA++ L  +P+   +  
Sbjct: 270 MIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYR-NVAA 328

Query: 412 WKALLGGCQIHSNVELGEFAARRIL-ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
             A++ G   +  ++     AR+I   +   DV  +  +    S  G+ D   ++ ++M 
Sbjct: 329 QTAMISGYVQNKRMD----DARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMV 384

Query: 471 EKGMT 475
           +K + 
Sbjct: 385 KKDIV 389



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 157/348 (45%), Gaps = 24/348 (6%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  +++ + S   Q+FD +P  N+VS  ++I  +      EEA  LF +M   ++    
Sbjct: 53  ISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDL---- 108

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +++  +I   T   +L   + L      +  + N    +A++  Y K    +EA R+F+ 
Sbjct: 109 YSWTLMITCYTRNGELAKARNLF---NLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDA 165

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               ++VS+ +M+ G  +       L+ F+EM  R+VVSWN M+ G+ + G    +   F
Sbjct: 166 MPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFF 225

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            ++     V +  T+ C       IA     + F    ++     +V   N++I+ Y + 
Sbjct: 226 EKIPNPNTV-SWVTMLCGFARFGKIAE--ARRLFDQMPIR-----NVVAWNAMIAAYVQN 277

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             +++++ +F ++ E+N ++W  VI GY + G+ +EA +   +M    +      + G +
Sbjct: 278 CHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYV 337

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
                   ++     F+Q  + D        +  M+   S+ GR  EA
Sbjct: 338 ----QNKRMDDARQIFNQISIRDVVC-----WNTMIAGYSQCGRMDEA 376



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 145/358 (40%), Gaps = 72/358 (20%)

Query: 44  IRTDSVSCGSESDKFSSVHQ------VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97
           ++ D VS  +    ++ V Q      +F+E+ + N+VS  ++I    +   Y +A+  F 
Sbjct: 384 VKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFM 443

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
            M     +P + TF   + S   L  L +GKQLH    K G  +++FV +A++ +Y K  
Sbjct: 444 LMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCG 503

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
           SI  A  +F+D  + +VVS+ ++I                                 Y+ 
Sbjct: 504 SISSAELLFKDIDHFDVVSWNSLI-------------------------------AAYAL 532

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
            G   EA+ LF +M  EG+ P+  T    + A +++  +  G     C V+       + 
Sbjct: 533 NGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQ------AYN 586

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
              L   YA    M D L                      + GR EEA +    M+IN  
Sbjct: 587 IEPLAEHYA---CMVDLL---------------------GRAGRLEEAFQLVRGMKINA- 621

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
             N      LL AC   G +E   + F+  KL +    K  +Y  + ++ + +GR+ E
Sbjct: 622 --NAGIWGALLGACRIHGNLE--LAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDE 675


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 163/469 (34%), Positives = 282/469 (60%), Gaps = 5/469 (1%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           SCG       S  +VF  + + +VVS  ++I  F ++   ++A+ LF +M   +++ S  
Sbjct: 178 SCGD----LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHV 233

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T   V+ +   + +L  G+Q+ ++  +  +  N+ + +A+LD+Y K  SIE+A R+F+  
Sbjct: 234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              + V++TTM+ G    E +E A ++   MP +++V+WNA+I  Y Q G+  EA+ +F 
Sbjct: 294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353

Query: 230 EM-LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           E+ L++ +  N  TL   + A A + AL +G+  H+   K   +++  V ++LI  Y+KC
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC 413

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +E S  VF+ + +R++  W+A+I G A +G G EA++ F +M+   ++PNGVT   + 
Sbjct: 414 GDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+HTGLV++  S F Q +     + + +HYAC+VD+L RSG  ++A +F+  +P  P 
Sbjct: 474 CACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPS 533

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W ALLG C+IH+N+ L E A  R+L L+P +  ++V+LSN  +  GKW+NVS +R+ 
Sbjct: 534 TSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKH 593

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M+  G+ + PGCS IEI   +H F++GD  H M++++Y  L    E+++
Sbjct: 594 MRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLK 642



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 149/293 (50%), Gaps = 14/293 (4%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P   S    +  L      E A K+F E+P  N  +WN +I  Y+       ++  F++
Sbjct: 61  DPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLD 120

Query: 231 MLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           M+ E    PN  T P  I AAA +++L +G+S H  AVK     DVFV NSLI  Y  CG
Sbjct: 121 MVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCG 180

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++ +  VF  + E+++V+WN++I G+ Q G  ++A+E F++M    ++ + VT++G+L 
Sbjct: 181 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 240

Query: 350 ACNHTGLVEKGY---SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           AC     +E G    SY  + ++     L       M+D+ ++ G  ++AK  L+D   +
Sbjct: 241 ACAKIRNLEFGRQVCSYIEENRVNVNLTLA----NAMLDMYTKCGSIEDAKR-LFDAMEE 295

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGK 458
                W  +L G  I  + E    AAR +L   P+ D+ ++  L +A    GK
Sbjct: 296 KDNVTWTTMLDGYAISEDYE----AAREVLNSMPQKDIVAWNALISAYEQNGK 344



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 182/396 (45%), Gaps = 72/396 (18%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTAL 121
           +VFDE+P  N  +  T+I  +A       +I+ F  M+  +   P+++TF  +I ++  +
Sbjct: 85  KVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEV 144

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L+LG+ LH  A K  + S+VFV ++++  Y     ++ A +VF      +VVS+ +MI
Sbjct: 145 SSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMI 204

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G +++   + AL+LF++M   +V +                               +H 
Sbjct: 205 NGFVQKGSPDKALELFKKMESEDVKA-------------------------------SHV 233

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A A I  L  G+   +   +    +++ + N+++  Y KCGS+ED+  +FD +
Sbjct: 234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293

Query: 302 TE-------------------------------RNIVTWNAVICGYAQNGRGEEAIEFFE 330
            E                               ++IV WNA+I  Y QNG+  EA+  F 
Sbjct: 294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353

Query: 331 RMRIN-GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDL 386
            +++   ++ N +TL+  L AC   G +E G   +SY  +  +     +     + ++ +
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR----MNFHVTSALIHM 409

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            S+ G  ++++E +++      +  W A++GG  +H
Sbjct: 410 YSKCGDLEKSRE-VFNSVEKRDVFVWSAMIGGLAMH 444


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 171/473 (36%), Positives = 273/473 (57%), Gaps = 4/473 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPS 107
           VS  +   +      +F+ +P  ++VS   +I  + +     +A+ LFSRML   ++ P 
Sbjct: 237 VSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPD 296

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           EFT  SV+ +   L ++ +GKQ+HA+  +  +  N  V +A++  Y K  S+E A R+ +
Sbjct: 297 EFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMD 356

Query: 168 DTHNP--NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
            +     NV+S+T ++ G +K    E A ++F  M +R+VV+W AMI GY Q GRN+EA+
Sbjct: 357 QSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAI 416

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           +LF  M+  G  PN  TL   +   A++A L  GK  H  A++ L +    V N++I+ Y
Sbjct: 417 DLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMY 476

Query: 286 AKCGSMEDSLLVFDKLTERN-IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           A+ GS   +  +FD++  R   +TW ++I   AQ+G+GEEA+  FE M   G+ P+ +T 
Sbjct: 477 ARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITY 536

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +G+L AC+H G V +G  Y+ Q K E     +  HYACMVDLL+R+G F EA+EF+  +P
Sbjct: 537 VGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 596

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
            +P    W +LL  C++H N EL E AA ++L++DP +  +Y  ++N  S  G+W + + 
Sbjct: 597 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 656

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           I +  KEK + +  G SW  I+SK+HVF   D  H   D +YA+     E+I+
Sbjct: 657 IWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIK 709



 Score =  178 bits (452), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 210/444 (47%), Gaps = 44/444 (9%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S + +    VF E+P+ + VS T ++    +   + EAI     M      P++FT  
Sbjct: 109 AKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLT 168

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ S    +   +G+++H++  K+GL S V V +++L++Y K    E A+ VFE     
Sbjct: 169 NVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVR 228

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +V S+  M+       R + A  LF+ MP R++VSWNAMI GY+Q G + +A+ LF  ML
Sbjct: 229 SVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRML 288

Query: 233 RE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            E  + P+  T+   + A AN+  + +GK  HA  ++     +  V N+LIS YAK GS+
Sbjct: 289 HESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSV 348

Query: 292 EDSLLVFDKLTE---------------------------------RNIVTWNAVICGYAQ 318
           E++  + D+  E                                 R++V W A+I GY Q
Sbjct: 349 ENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQ 408

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA---KLEDPGML 375
           NGR +EAI+ F  M   G  PN  TL  +L  C     ++ G     +A    LE    +
Sbjct: 409 NGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSV 468

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAAR 433
                  ++ + +RSG F  A+     + +      W +++     H   E  +G F   
Sbjct: 469 SN----AIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 524

Query: 434 RILALDPEDVSSYVMLSNALSVAG 457
               ++P+ + +YV + +A S AG
Sbjct: 525 LRAGVEPDRI-TYVGVLSACSHAG 547



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 180/388 (46%), Gaps = 55/388 (14%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSS----IEEATRVFEDT--HNPNVVSYTTM 180
           G+ +HA A K GL ++ ++ + +L  Y + +     + +A R+F++      NV ++ ++
Sbjct: 45  GRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSL 104

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           +    K  R  DA  +F EMP R+ VSW  M+ G ++ GR  EA+   ++M  +G  P  
Sbjct: 105 LSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQ 164

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            TL   + + A   A  +G+  H+  VK  LG   V V NS+++ Y KCG  E +  VF+
Sbjct: 165 FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC-VPVANSVLNMYGKCGDAETASTVFE 223

Query: 300 K-------------------------------LTERNIVTWNAVICGYAQNGRGEEAIEF 328
           +                               +  R+IV+WNA+I GY QNG   +A++ 
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 329 FERM-RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMV 384
           F RM   + + P+  T+  +L AC + G V  G   ++Y  + ++        +    ++
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMA----YNSQVTNALI 339

Query: 385 DLLSRSGRFKEAKEFL-YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPE 441
              ++SG  + A+  +   +  D  +  + ALL G      V++G+  + R +   ++  
Sbjct: 340 STYAKSGSVENARRIMDQSMETDLNVISFTALLEG-----YVKIGDMESAREMFGVMNNR 394

Query: 442 DVSSYVMLSNALSVAGKWDNVSNIRREM 469
           DV ++  +       G+ D   ++ R M
Sbjct: 395 DVVAWTAMIVGYEQNGRNDEAIDLFRSM 422



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 37/135 (27%)

Query: 257 GMGKSFHACAVKF-------------------------------------LGKLDVFVGN 279
           G G++ HA AVK                                      L + +VF  N
Sbjct: 43  GAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWN 102

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           SL+S +AK G + D+  VF ++ ER+ V+W  ++ G  + GR  EAI+    M  +G  P
Sbjct: 103 SLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTP 162

Query: 340 NGVTLLGLLWACNHT 354
              TL  +L +C  T
Sbjct: 163 TQFTLTNVLSSCAVT 177


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 261/447 (58%), Gaps = 31/447 (6%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           +VVS TT+I  + + +  ++A+  F +ML   IR  E    + + +   L+ L  G+Q+H
Sbjct: 555 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 614

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A A   G  S++   +A++ LY +   IEE+   FE T   + ++               
Sbjct: 615 AQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIA--------------- 659

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
                           WNA++ G+ Q+G NEEA+ +F+ M REG+  N+ T   A+ AA+
Sbjct: 660 ----------------WNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAAS 703

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
             A +  GK  HA   K     +  V N+LIS YAKCGS+ D+   F +++ +N V+WNA
Sbjct: 704 ETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNA 763

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I  Y+++G G EA++ F++M  + +RPN VTL+G+L AC+H GLV+KG +YF     E 
Sbjct: 764 IINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEY 823

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
               KPEHY C+VD+L+R+G    AKEF+ ++P  P    W+ LL  C +H N+E+GEFA
Sbjct: 824 GLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFA 883

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A  +L L+PED ++YV+LSN  +V+ KWD     R++MKEKG+ + PG SWIE+K+ +H 
Sbjct: 884 AHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHS 943

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           F  GD+NH + DEI+   +  T++  E
Sbjct: 944 FYVGDQNHPLADEIHEYFQDLTKRASE 970



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 164/371 (44%), Gaps = 70/371 (18%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S   +F  +   + V+  T+I   ++  + E+A+ LF RM L  + P   T  S++ + +
Sbjct: 341 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACS 400

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF------------- 166
           A   L  G+QLHA+ TK+G  SN  +  A+L+LY K + IE A   F             
Sbjct: 401 ADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNV 460

Query: 167 --------EDTHN--------------PNVVSYTTM------------------------ 180
                   +D  N              PN  +Y ++                        
Sbjct: 461 MLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN 520

Query: 181 ------ICGLL-----KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                 +C +L     K  + + A  +      ++VVSW  MI GY+Q   +++A+  F 
Sbjct: 521 FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFR 580

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +ML  G+  +   L  A+ A A + AL  G+  HA A       D+   N+L++ Y++CG
Sbjct: 581 QMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCG 640

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            +E+S L F++    + + WNA++ G+ Q+G  EEA+  F RM   GI  N  T    + 
Sbjct: 641 KIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVK 700

Query: 350 ACNHTGLVEKG 360
           A + T  +++G
Sbjct: 701 AASETANMKQG 711



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 182/420 (43%), Gaps = 45/420 (10%)

Query: 43  AIRTDSVSCGSESDKFSS------VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLF 96
            +R  +V C    D +S         +VFD +   +  S   +I   +K     EAI LF
Sbjct: 217 GLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLF 276

Query: 97  SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL 156
             M +L I P+ + F SV+ +   +E L +G+QLH    K+G  S+ +V +A++ LY  L
Sbjct: 277 CDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHL 336

Query: 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216
            ++  A  +F +                               M  R+ V++N +I G S
Sbjct: 337 GNLISAEHIFSN-------------------------------MSQRDAVTYNTLINGLS 365

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
           Q G  E+A+ LF  M  +GL P+ +TL   ++A +    L  G+  HA   K     +  
Sbjct: 366 QCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNK 425

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +  +L++ YAKC  +E +L  F +    N+V WN ++  Y        +   F +M+I  
Sbjct: 426 IEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEE 485

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFK 394
           I PN  T   +L  C   G +E G    SQ    +    +   Y C  ++D+ ++ G+  
Sbjct: 486 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTN---FQLNAYVCSVLIDMYAKLGKLD 542

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
            A + L        +  W  ++ G   ++  +      R++  LD    S  V L+NA+S
Sbjct: 543 TAWDILIRFAGKDVVS-WTTMIAGYTQYNFDDKALTTFRQM--LDRGIRSDEVGLTNAVS 599



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 145/299 (48%), Gaps = 32/299 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+P+  + +   +I   A ++   E   LF RM+  N+ P+E TF  V+ +     
Sbjct: 141 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 200

Query: 123 -DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
              ++ +Q+HA     GL+ +  V + ++DLY +   ++ A RVF+     +  S+  MI
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 260

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            GL K E                                  EA+ LF +M   G++P   
Sbjct: 261 SGLSKNE-------------------------------CEAEAIRLFCDMYVLGIMPTPY 289

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A   I +L +G+  H   +K     D +V N+L+S Y   G++  +  +F  +
Sbjct: 290 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 349

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++R+ VT+N +I G +Q G GE+A+E F+RM ++G+ P+  TL  L+ AC+  G + +G
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 108/260 (41%), Gaps = 35/260 (13%)

Query: 104 IRPSEFTFGSVIPSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           IRP+  T   ++         L+ G++LH+   K+GL SN  +   + D Y         
Sbjct: 80  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFY--------- 130

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                                L K + +  A K+F EMP R + +WN MI   +      
Sbjct: 131 ---------------------LFKGDLY-GAFKVFDEMPERTIFTWNKMIKELASRNLIG 168

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAA-ANIAALGMGKSFHACAVKFLGKLD-VFVGNS 280
           E   LF+ M+ E + PN  T    + A      A  + +  HA  + + G  D   V N 
Sbjct: 169 EVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHA-RILYQGLRDSTVVCNP 227

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI  Y++ G ++ +  VFD L  ++  +W A+I G ++N    EAI  F  M + GI P 
Sbjct: 228 LIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPT 287

Query: 341 GVTLLGLLWACNHTGLVEKG 360
                 +L AC     +E G
Sbjct: 288 PYAFSSVLSACKKIESLEIG 307



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 5/219 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  S   K    +  F++    + ++   ++  F +  + EEA+ +F RM    I  + 
Sbjct: 633 VTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNN 692

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTFGS + +++   ++  GKQ+HA  TK G  S   V +A++ +Y K  SI +A + F +
Sbjct: 693 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLE 752

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEA 224
               N VS+  +I    K     +AL  F +M H NV    V+   ++   S  G  ++ 
Sbjct: 753 VSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSF 262
           +  F  M  E GL P      C +        L   K F
Sbjct: 813 IAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEF 851



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 12/190 (6%)

Query: 235 GLVPNHSTLPCAIIAAANI-AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           G+ PNH TL   +        +L  G+  H+  +K     +  +   L  FY   G +  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VFD++ ER I TWN +I   A      E    F RM    + PN  T  G+L AC  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 354 TG----LVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
                 +VE+ ++      L D  ++  P     ++DL SR+G    A+     L     
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNP-----LIDLYSRNGFVDLARRVFDGLRLKDH 253

Query: 409 IGFWKALLGG 418
              W A++ G
Sbjct: 254 SS-WVAMISG 262


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  327 bits (839), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 167/458 (36%), Positives = 266/458 (58%), Gaps = 33/458 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VFDE+ + NVVS T +I  ++++    EA++LF +ML  +  P+EFTF +V+ S T   
Sbjct: 66  HVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFS 125

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
              LG+Q+H+   K   ++++FVGS++LD+Y K   I EA  VFE              C
Sbjct: 126 GFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFE--------------C 171

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            +P R+VVS  A+I GY+Q G +EEA+ LF  + REG+  N+ T
Sbjct: 172 -----------------LPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVT 214

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A + +AAL  GK  H+  ++      V + NSLI  Y+KCG++  +  +F+ + 
Sbjct: 215 YASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMP 274

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGY 361
            R +++WNA++ GY+++G+G E ++ F+ MR  N ++P+ VT L +L  C+H GL +KG 
Sbjct: 275 VRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGL 334

Query: 362 SYFSQA-KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             F +     D      EHY C++DLL R+GR +EA E +  +PF+P    W +LLG C+
Sbjct: 335 EMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACR 394

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +HSN  +GEF   R+L ++PE+  +YV+LSN  + AG+W++V N+R  M EK + + PG 
Sbjct: 395 VHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGR 454

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           SWIE+   +H F   DR+H   +E++  +R    + +E
Sbjct: 455 SWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKE 492



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 142/279 (50%), Gaps = 8/279 (2%)

Query: 149 ILDLYIKLSSIEEATRV----FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN 204
           +L+  +   ++ E  RV     +  + P V   T +I    K E    A  +F EM  RN
Sbjct: 16  LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERN 75

Query: 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
           VVSW AMI GYSQ G   EA++LF++MLR    PN  T    + +    +   +G+  H+
Sbjct: 76  VVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHS 135

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
              K   +  +FVG+SL+  YAK G + ++  VF+ L ER++V+  A+I GYAQ G  EE
Sbjct: 136 HIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEE 195

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHYACM 383
           A+E F R++  G+  N VT   LL A +    ++ G    S   + E P  +  ++   +
Sbjct: 196 ALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQN--SL 253

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +D+ S+ G    A++   ++P    I  W A+L G   H
Sbjct: 254 IDMYSKCGNLNYARKIFNNMPVRTVIS-WNAMLVGYSKH 291



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 100/188 (53%), Gaps = 5/188 (2%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +++ +      VF+ +P+ +VVS T II  +A+    EEA+ LF R+    +  +  T+ 
Sbjct: 157 AKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYA 216

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ + + L  L+ GKQ+H+   +  L   V + ++++D+Y K  ++  A ++F +    
Sbjct: 217 SLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVR 276

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRN-----VVSWNAMIGGYSQTGRNEEAVNL 227
            V+S+  M+ G  K  +  + +KLF+ M   N      V++ A++ G S  G  ++ + +
Sbjct: 277 TVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEM 336

Query: 228 FIEMLREG 235
           F EM+  G
Sbjct: 337 FDEMMNGG 344


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 268/457 (58%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S S + S    VFD     +VV+   +I  + +   ++E++ LF  M  + + PS  T  
Sbjct: 165 SLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLV 224

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ + + L+DLN+GK++H +   + ++    + +A++D+Y     ++ A  +F++  + 
Sbjct: 225 SVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSR 284

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +V+S+T ++ G     +   A   F +MP R+ VSW AMI GY Q  R +E ++LF EM 
Sbjct: 285 DVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQ 344

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              + P+  T+   + A A++ AL +G+   A   K   K+D FVGN+LI  Y  CG++E
Sbjct: 345 AANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVE 404

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            ++ +F+ +  R+ ++W AVI G A NG GEEA++ F +M    I P+ VT +G+L AC 
Sbjct: 405 KAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACT 464

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+G+V+KG  +F++   +        HY CMVDLL R+G  KEA E + ++P  P    W
Sbjct: 465 HSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVW 524

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LLG C++H + E+ E AA++IL L+PE+ + YV+L N  +   +W+ +  +R+ M ++
Sbjct: 525 GSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDR 584

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           G+ + PGCS IE+   VH FV GD+ H  + EIY+ L
Sbjct: 585 GIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKL 621



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 205/474 (43%), Gaps = 82/474 (17%)

Query: 12  LSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVS--CGSESDKFSSVHQVFDEVP 69
           LSL K  K  S+A    I +Q      +  P +    ++  C  E         VFD +P
Sbjct: 23  LSLIKTCK--SMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMP 80

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
             N      +I  +++      A+ ++  ML   + P E+T+  ++   T    +  G++
Sbjct: 81  GPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRE 140

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           LH    K+G  SNVFV +A++ LY     +  A  VF+ +   +VV++  MI G  + ++
Sbjct: 141 LHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQ 200

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
           F++++KLF EM                             E +R  ++P+  TL   + A
Sbjct: 201 FDESMKLFDEM-----------------------------ERMR--VLPSSITLVSVLSA 229

Query: 250 AANIAALGMGKSFHACAVKFLGKLDV----FVGNSLISFYAKCGSMEDSLLV-------- 297
            + +  L +GK  H    +++  L +     + N+LI  YA CG M+ +L +        
Sbjct: 230 CSKLKDLNVGKRVH----RYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRD 285

Query: 298 -----------------------FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
                                  FDK+ ER+ V+W A+I GY Q  R +E +  F  M+ 
Sbjct: 286 VISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQA 345

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGR 392
             I+P+  T++ +L AC H G +E G   + +A + D   +K + +    ++D+    G 
Sbjct: 346 ANIKPDEFTMVSILTACAHLGALELG--EWIKAYI-DKNEIKIDSFVGNALIDMYFNCGN 402

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVS 444
            ++A      +P    I  W A++ G  I+   E  L  F+     ++ P++V+
Sbjct: 403 VEKAIRIFNAMPHRDKIS-WTAVIFGLAINGYGEEALDMFSQMLKASITPDEVT 455



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 13/304 (4%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           NP V +     C   +    E A  +F  MP  N   WN MI GYS+ G    AV+++ E
Sbjct: 50  NPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCE 109

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           ML  G++P+  T P  +       A+  G+  H   VK     +VFV N+LI  Y+  G 
Sbjct: 110 MLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGE 169

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  VFD+ ++ ++VTWN +I GY ++ + +E+++ F+ M    + P+ +TL+ +L A
Sbjct: 170 VSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSA 229

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C+    +  G   + Y    K+E   +L+      ++D+ +  G    A     ++    
Sbjct: 230 CSKLKDLNVGKRVHRYVKDLKIEPVRVLE----NALIDMYAACGDMDTALGIFDNMKSRD 285

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIR 466
            I  W A++ G      V L    AR      PE D  S+  + +      ++  V ++ 
Sbjct: 286 VIS-WTAIVTGFTNLGQVGL----ARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLF 340

Query: 467 REMK 470
           REM+
Sbjct: 341 REMQ 344


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 170/458 (37%), Positives = 263/458 (57%), Gaps = 3/458 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           SES       +V D +P+ N VS  T+I R  ++ +  EA+ L+S+ML    RP+   F 
Sbjct: 327 SESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFS 386

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +   LEDL  G ++HA + K+G  +NVFV S+++D+Y K     +A  +F+     
Sbjct: 387 SVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEK 446

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+V + ++  G     +  +A+ LF++MP RN+ SWN +I GY+Q  +  +A+  F  ML
Sbjct: 447 NIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAML 506

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G VP   T    ++A AN+ +L  GK  HA  +K   +  +F+G +L   YAK G ++
Sbjct: 507 ASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQ 566

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S  +F ++ ERN VTW A+I G A+NG  EE+I  FE M   G+ PN  T L LL+AC+
Sbjct: 567 SSKRMFYQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACS 626

Query: 353 HTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           H GLVE+   YF   K++  G+  K +HY CMVD+L+R+GR  EA+  L   P       
Sbjct: 627 HGGLVEQAIHYFE--KMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANS 684

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ALL  C  + N E+GE AA+R+  L  ++ + YV+LSN  +  G+W + + IR  MK 
Sbjct: 685 WAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKG 744

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
             + +  GCSW++++ + H F + +  H ++ EI  +L
Sbjct: 745 TTLKKDGGCSWVQVRGQYHAFFSWEAKHPLSMEINEIL 782



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 182/390 (46%), Gaps = 38/390 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +++++ P  +V   T  I  F +   +  A+ +F +M+   +RP+  TF  +I +     
Sbjct: 204 ELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAG 263

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           +  L   +   A K    +S++ V ++++ LY+++     A +VF++    +VVS+T ++
Sbjct: 264 EFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALL 323

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    + A ++   MP RN VSW  +I  + Q G   EAV L+ +ML +G  PN S
Sbjct: 324 DVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNIS 383

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A A +  L  G   HA ++K     +VFV +SLI  Y KC    D+  +FD L
Sbjct: 384 CFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTL 443

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMR--------------------INGIR--- 338
            E+NIV WN++  GY+ NG+  EA+  F++M                     ++ +R   
Sbjct: 444 PEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFN 503

Query: 339 --------PNGVTLLGLLWAC-NHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLS 388
                   P  +T   +L AC N   LV    ++    KL   GM +       + D+ +
Sbjct: 504 AMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKL---GMEESIFIGTALSDMYA 560

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +SG  + +K   Y +P    +  W A++ G
Sbjct: 561 KSGDLQSSKRMFYQMPERNDVT-WTAMIQG 589



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 146/363 (40%), Gaps = 68/363 (18%)

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED-----THNP---- 172
           E L L   LHA A + G+ ++  V S +L  Y   +   E  R F D       +P    
Sbjct: 97  ERLPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYD 156

Query: 173 -------------------------NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
                                    +VVSYTTM+  L+KR R  +A++L+++ P  +V  
Sbjct: 157 FMVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAF 216

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           + A I G+ +   +  A+ +F +M+  G+ PN  T  C I A       G+  S    A+
Sbjct: 217 FTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 276

Query: 268 KF--------------------------------LGKLDVFVGNSLISFYAKCGSMEDSL 295
           K                                 +   DV    +L+  Y++ G ++ + 
Sbjct: 277 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 336

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            V D + ERN V+W  +I  + Q G   EA++ + +M  +G RPN      +L AC    
Sbjct: 337 RVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLE 396

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            +  G    +++ L+          + ++D+  +  + ++A+     LP +  I  W +L
Sbjct: 397 DLRGGARIHARS-LKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP-EKNIVCWNSL 454

Query: 416 LGG 418
             G
Sbjct: 455 ASG 457



 Score = 45.4 bits (106), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 41/251 (16%)

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           A++L    +R G+  + S     +   A  A A    ++F  C     G    F  + ++
Sbjct: 102 ALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAA--GAASPFTYDFMV 159

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE------------ 330
             + K G +  +  +FD + ER++V++  ++    + GR  EA+E +E            
Sbjct: 160 HEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTA 219

Query: 331 -------------------RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
                              +M   G+RPNG+T + ++ AC   G      S    A   +
Sbjct: 220 TISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSN 279

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF- 430
                 E    ++ L  R G    A++   ++     +  W ALL    ++S  E G+  
Sbjct: 280 FFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVS-WTALL---DVYS--ESGDLD 333

Query: 431 AARRILALDPE 441
            ARR+L   PE
Sbjct: 334 GARRVLDAMPE 344


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 175/505 (34%), Positives = 276/505 (54%), Gaps = 22/505 (4%)

Query: 20  LHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTI 79
           LH L PN  +  +                V+  + S    S   VFD + + + +   +I
Sbjct: 105 LHGLQPNAFLAAKM---------------VAMYASSGDLDSAVVVFDRIDNPSSLLYNSI 149

Query: 80  IGRFAKQ---HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK 136
           I  + +          +  ++RM  L +    FT   V+ S   L  + +G+ +H    +
Sbjct: 150 IRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLR 209

Query: 137 VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKL 196
           VGL+ + +VG++++D+Y+K   I +A ++F+     ++ S+  +I G +K      A  L
Sbjct: 210 VGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDL 269

Query: 197 FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG--LVPNHSTLPCAIIAAANIA 254
           F+ M HRN+VSW AMI GY+Q G  E+A+ LF EML++G  + PN  T+   + A A  A
Sbjct: 270 FERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSA 329

Query: 255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAV 312
           AL  G+  H  A      L+  V  +L   YAKC S+ ++   FD + +  +N++ WN +
Sbjct: 330 ALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTM 389

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           I  YA +G G EA+  FE M   G++P+ VT +GLL  C+H+GL++ G ++F+       
Sbjct: 390 ITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHS 449

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
              + EHYAC+VDLL R+GR  EAKE +  +P   G   W ALL  C+ H N+E+ E AA
Sbjct: 450 VEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAA 509

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVF 492
           RR+  L+P++  +YV+LSN  + AG W+ V  +R  +K +GM + PGCSWIEI  K H+F
Sbjct: 510 RRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLF 569

Query: 493 VTGDRNHHMNDEIYAVLRSCTEQIR 517
           +  D++H    EIY  L +  E+I+
Sbjct: 570 MGADKSHPQAKEIYKFLEALPEKIK 594



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 126/291 (43%), Gaps = 67/291 (23%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P   ++  +    T    + LG+Q HA     GLQ N F+ + ++ +Y     ++ A  V
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG---RNE 222
           F+   NP+ + Y                               N++I  Y++ G      
Sbjct: 135 FDRIDNPSSLLY-------------------------------NSIIRAYTRHGXXXXXX 163

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
             +  +  M   GL+ ++ TLP  + + A+++ + MG+  H   ++   + D +VG SLI
Sbjct: 164 XXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLI 223

Query: 283 SFYAKCGSMEDSLLVFDKLT-------------------------------ERNIVTWNA 311
             Y KCG + D+  +FDK+                                 RNIV+W A
Sbjct: 224 DMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTA 283

Query: 312 VICGYAQNGRGEEAIEFFERMRING--IRPNGVTLLGLLWACNHTGLVEKG 360
           +I GY QNG  E+A+  F+ M  +G  ++PN VT++ +L AC  +  +E+G
Sbjct: 284 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERG 334



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 22/268 (8%)

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           +G+  HA  V    + + F+   +++ YA  G ++ +++VFD++   + + +N++I  Y 
Sbjct: 95  LGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYT 154

Query: 318 QNG---RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
           ++G        +E + RM   G+  +  TL  +L +C     V  G     Q        
Sbjct: 155 RHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVG--- 211

Query: 375 LKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE--- 429
           L+ + Y  A ++D+  + G   +A++ L+D      +  W AL+ G      + + E   
Sbjct: 212 LEGDFYVGASLIDMYVKCGVIGDARK-LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLF 270

Query: 430 --FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV---PGCSW-- 482
                R I++     +S Y     A    G +D +     EMK   +T V   P C+   
Sbjct: 271 ERMEHRNIVSWTAM-ISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSA 329

Query: 483 -IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            +E   ++H F  G    H+N  +   L
Sbjct: 330 ALERGRRIHDFANGI-GLHLNSSVQTAL 356


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/517 (34%), Positives = 279/517 (53%), Gaps = 45/517 (8%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           L+  C    SL+    +H+    +L  +Q A    L+   I      CG+ +D      +
Sbjct: 70  LITACARYRSLDDARAIHA----HLAGSQFAGSVFLDNSLIHL-YCKCGAVAD----ARR 120

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  ++ S T++I  +A+    +EA+ L   ML    +P+ FTF S++ ++ A   
Sbjct: 121 VFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASAS 180

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             +G+Q+HA   K     +V+VGSA+LD+Y +                          CG
Sbjct: 181 SGIGEQIHALTVKYDWHDDVYVGSALLDMYAR--------------------------CG 214

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                R + A+ +F ++  +N VSWNA+I G+++ G  E  + +F EM R G    H T 
Sbjct: 215 -----RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTY 269

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                A A I AL  GK  HA  +K   +L  FVGN+++  YAK GSM D+  VFD++ +
Sbjct: 270 SSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDK 329

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++VTWN+++  +AQ G G EA+  FE MR  G+  N +T L +L AC+H GLV++G  Y
Sbjct: 330 KDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQY 389

Query: 364 FSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F   K  +   L+PE  HY  +VDLL R+G   +A  F++ +P  P    W ALLG C++
Sbjct: 390 FDMMKEYN---LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ++G+FAA  +  LDP+D    V+L N  +  G+WD  + +R+ MK  G+ + P CS
Sbjct: 447 HKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACS 506

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+EI++ VH+FV  D  H  ++EIY      + QIR+
Sbjct: 507 WVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRK 543


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 163/452 (36%), Positives = 263/452 (58%), Gaps = 4/452 (0%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NV++   ++    +     +A+    RM      P        + +   + D+ +G+QLH
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLH 179

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            +  K G + +  V +A++D+Y K    +E  RVF+++ + +V S   ++ GL +  +  
Sbjct: 180 GYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVS 239

Query: 192 DALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
           +AL+LF+E   R    NVVSW +++    Q GR+ EAV+LF EM  EG+ PN  T+PC +
Sbjct: 240 EALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVL 299

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A ANIAAL  G+S H  +++     D++VG++L+  YAKCG + D+ ++F+ +  RN+V
Sbjct: 300 PAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVV 359

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WNA+I GYA +G  E A+  F  M+ +  +P+ VT   +L AC+  G  E+G SYF++ 
Sbjct: 360 SWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEM 419

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
           + +     + EHYACMV LL R+G+  +A + +  +PF+P    W +LLG C++H NV L
Sbjct: 420 QHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVL 479

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            E AA  +  L+PE+  +YV+LSN  +    WD V+ +R  MK  G+ +  GCSWIEIK+
Sbjct: 480 AEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKN 539

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           KVH+ + GD +H M   I   L+  T ++R  
Sbjct: 540 KVHMLLAGDSSHPMMAAITEKLKHLTMEMRRL 571



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 171/380 (45%), Gaps = 52/380 (13%)

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           G+  + FV S++L  Y++  +  +A  V +   +  VV ++ +I         E A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 198 QEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
           + M       NV++WN ++ G +++GR  +AV   + M  EG +P+ + + CA+ A  ++
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT----------- 302
             + +G+  H   VK   +LD  V  +LI  Y KCG  ++ + VFD+ +           
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 303 ------------------------ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
                                   E N+V+W +++    QNGR  EA++ F  M+  GI 
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIE 289

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-----ACMVDLLSRSGRF 393
           PN VT+  +L A  +   +  G S    +      + K  H+     + +VD+ ++ GR 
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFS------LRKGFHHDIYVGSALVDMYAKCGRV 343

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL-ALDPEDVSSYVMLSNA 452
           ++A+     +P+   +  W A++GG  +H   E      R +  + +  D+ ++  +  A
Sbjct: 344 RDARMIFEAMPYRNVVS-WNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGA 402

Query: 453 LSVAGKWDNVSNIRREMKEK 472
            S AG  +   +   EM+ K
Sbjct: 403 CSQAGWTEEGRSYFNEMQHK 422



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 5/183 (2%)

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           +LNVVS T+I+    +     EA+ LF  M    I P+  T   V+P+   +  L  G+ 
Sbjct: 254 ELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRS 313

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
            H ++ + G   +++VGSA++D+Y K   + +A  +FE     NVVS+  MI G      
Sbjct: 314 AHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGE 373

Query: 190 FEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLP 244
            E+A++LF+ M       ++V++  ++G  SQ G  EE  + F EM  + G+ P      
Sbjct: 374 AENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYA 433

Query: 245 CAI 247
           C +
Sbjct: 434 CMV 436


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/517 (34%), Positives = 279/517 (53%), Gaps = 45/517 (8%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           L+  C    SL+    +H+    +L  +Q A    L+   I      CG+ +D      +
Sbjct: 70  LITACARYRSLDDARAIHA----HLAGSQFAGSVFLDNSLIHL-YCKCGAVAD----ARR 120

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  ++ S T++I  +A+    +EA+ L   ML    +P+ FTF S++ ++ A   
Sbjct: 121 VFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASAS 180

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             +G+Q+HA   K     +V+VGSA+LD+Y +                          CG
Sbjct: 181 SGIGEQIHALTVKYDWHDDVYVGSALLDMYAR--------------------------CG 214

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                R + A+ +F ++  +N VSWNA+I G+++ G  E  + +F EM R G    H T 
Sbjct: 215 -----RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTY 269

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                A A I AL  GK  HA  +K   +L  FVGN+++  YAK GSM D+  VFD++ +
Sbjct: 270 SSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDK 329

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++VTWN+++  +AQ G G EA+  FE MR  G+  N +T L +L AC+H GLV++G  Y
Sbjct: 330 KDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQY 389

Query: 364 FSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F   K  +   L+PE  HY  +VDLL R+G   +A  F++ +P  P    W ALLG C++
Sbjct: 390 FDMMKEYN---LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRM 446

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ++G+FAA  +  LDP+D    V+L N  +  G+WD  + +R+ MK  G+ + P CS
Sbjct: 447 HKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACS 506

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+EI++ VH+FV  D  H  ++EIY      + QIR+
Sbjct: 507 WVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRK 543


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 174/456 (38%), Positives = 262/456 (57%), Gaps = 41/456 (8%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +S  ++FDE+P  +VVS   +I  +A+  + +EA+ LF  M+  N+RP E T  SV+ +
Sbjct: 170 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 229

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                 + LG+Q+H+W    G  SN+ + +A++DLYIK   +E A               
Sbjct: 230 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA--------------- 274

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               CGL            F+ + +++V+SWN +IGGY+     +EA+ LF EMLR G  
Sbjct: 275 ----CGL------------FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 318

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN------SLISFYAKCGSM 291
           PN  T+   + A A++ A+ +G+  H     ++ K    V N      SLI  YAKCG +
Sbjct: 319 PNDVTMLSILPACAHLGAIEIGRWIHV----YINKRLKGVANASSHRTSLIDMYAKCGDI 374

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           E +  VFD +  R++ +WNA+I G+A +GR   A + F RMR N I P+ +T +GLL AC
Sbjct: 375 EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSAC 434

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H+G+++ G   F   K +     K EHY CM+DLL  SG FKEA+E +  +  +P    
Sbjct: 435 SHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 494

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W +LL  C++H NVELGE  A+ ++ ++P++  SYV+LSN  + AG+W+ V+ IR  + +
Sbjct: 495 WCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLND 554

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           KGM +VPGCS IEI S VH F+ GD+ H  N EIY 
Sbjct: 555 KGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 590



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 227/411 (55%), Gaps = 5/411 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ + + N++   T+    A       A+YL+  M+ L + P+ +TF  ++ S    + 
Sbjct: 44  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 103

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+H    K+G   +++V ++++ +Y++   +E+A +VF+ + + +VVSYT +I G
Sbjct: 104 FREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITG 163

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              +     A K+F E+P ++VVSWNAMI GY++TG N+EA+ LF EM++  + P+ ST+
Sbjct: 164 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 223

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A  A++ +G+  H+         ++ + N+LI  Y KCG +E +  +F+ L+ 
Sbjct: 224 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 283

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H G +E G   
Sbjct: 284 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 343

Query: 364 FSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                    G+     H   ++D+ ++ G  + A++ ++D   +  +  W A++ G  +H
Sbjct: 344 HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQ-VFDSILNRSLSSWNAMIFGFAMH 402

Query: 423 --SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
             +N     F+  R   ++P+D+ ++V L +A S +G  D   +I R MKE
Sbjct: 403 GRANAAFDIFSRMRKNEIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMKE 452



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 39/260 (15%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+ +   N++ WN M  G++ +     A+ L++ M+  GL+PN  T P  + + A 
Sbjct: 41  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 100

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------- 304
             A   G+  H   +K    LD++V  SLIS Y + G +ED+  VFD+ + R        
Sbjct: 101 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 160

Query: 305 -----------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                  ++V+WNA+I GYA+ G  +EA+E F+ M    +RP+ 
Sbjct: 161 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDE 220

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM---LKPEHYACMVDLLSRSGRFKEAKE 398
            T++ ++ AC  +  +E G    S   ++D G    LK  +   ++DL  + G  + A  
Sbjct: 221 STMVSVVSACAQSASIELGRQVHSW--IDDHGFGSNLKIVN--ALIDLYIKCGEVETACG 276

Query: 399 FLYDLPFDPGIGFWKALLGG 418
               L +   I  W  L+GG
Sbjct: 277 LFEGLSYKDVIS-WNTLIGG 295


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 171/453 (37%), Positives = 265/453 (58%), Gaps = 8/453 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     Q FD +   +VVS  TII  +A+    +EA  LF    + ++    FT+ +++ 
Sbjct: 234 KIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVS 289

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                  +   ++L         + N    +A+L  Y++   +E A  +F+     NV +
Sbjct: 290 GYIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVST 345

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + TMI G  +  +  +A  LF +MP R+ VSW AMI GYSQ+G + EA+ LF++M REG 
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG 405

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             N S+   A+   A++ AL +GK  H   VK   +   FVGN+L+  Y KCGS+E++  
Sbjct: 406 RLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAND 465

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F ++  ++IV+WN +I GY+++G GE A+ FFE M+  G++P+  T++ +L AC+HTGL
Sbjct: 466 LFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGL 525

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V+KG  YF     +   M   +HYACMVDLL R+G  ++A   + ++PF+P    W  LL
Sbjct: 526 VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLL 585

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G  ++H N EL E AA +I A++PE+   YV+LSN  + +G+W +V  +R  M++KG+ +
Sbjct: 586 GASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK 645

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           VPG SWIEI++K H F  GD  H   DEI+A L
Sbjct: 646 VPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFL 678



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 187/429 (43%), Gaps = 55/429 (12%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTF 111
           +F    ++FDE+P+ ++VS   +I  + +  +  +A  LF  M        N   S +  
Sbjct: 110 EFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQ 169

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
              +  + ++ D    K   +W             +A+L  Y++ S +EEA  +F+   N
Sbjct: 170 NGCVDDARSVFDRMPEKNDVSW-------------NALLSAYVQNSKMEEACMLFKSREN 216

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE- 230
             +VS+  ++ G +K+++  +A + F  M  R+VVSWN +I GY+Q+G+ +EA  LF E 
Sbjct: 217 WALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276

Query: 231 ---------MLREGLVPNH---------STLP--CAIIAAANIAALGMGKSFHACAVKF- 269
                     +  G + N            +P    +   A +A    G+        F 
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFD 336

Query: 270 -LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
            +   +V   N++I+ YA+CG + ++  +FDK+ +R+ V+W A+I GY+Q+G   EA+  
Sbjct: 337 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRL 396

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD--- 385
           F +M   G R N  +    L  C     +E G       +L   G        C V    
Sbjct: 397 FVQMEREGGRLNRSSFSSALSTCADVVALELGKQL--HGRLVKGGY----ETGCFVGNAL 450

Query: 386 --LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPE 441
             +  + G  +EA +   ++     I  W  ++ G   H    V L  F + +   L P+
Sbjct: 451 LLMYCKCGSIEEANDLFKEMA-GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPD 509

Query: 442 DVSSYVMLS 450
           D +   +LS
Sbjct: 510 DATMVAVLS 518



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 132/300 (44%), Gaps = 55/300 (18%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           Y++     EA RVF+     + VSY  MI G L+   FE A KLF EMP R++VSWN MI
Sbjct: 74  YMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMI 133

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
            GY +     +A  LF                                       + + +
Sbjct: 134 KGYVRNRNLGKARELF---------------------------------------EIMPE 154

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            DV   N+++S YA+ G ++D+  VFD++ E+N V+WNA++  Y QN + EEA   F+  
Sbjct: 155 RDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS- 213

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
                R N      + W C   G V+K     ++   +   +     +  ++   ++SG+
Sbjct: 214 -----RENWAL---VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGK 265

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE--DVSSYVMLS 450
             EA++   + P    +  W A++ G   +  VE     AR +    PE  +VS   ML+
Sbjct: 266 IDEARQLFDESPVQD-VFTWTAMVSGYIQNRMVE----EARELFDKMPERNEVSWNAMLA 320



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 137/301 (45%), Gaps = 15/301 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T    CG    K S    +FD++P  + VS   +I  +++  H  EA+ LF +M     R
Sbjct: 351 TGYAQCG----KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGR 406

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
            +  +F S + +   +  L LGKQLH    K G ++  FVG+A+L +Y K  SIEEA  +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRN 221
           F++    ++VS+ TMI G  +    E AL+ F+ M    +     +  A++   S TG  
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526

Query: 222 EEAVNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
           ++    F  M ++ G++PN     C +     +   G+ +  H        + D  +  +
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDL---LGRAGLLEDAHNLMKNMPFEPDAAIWGT 583

Query: 281 LISFYAKCGSMEDSLLVFDK---LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           L+      G+ E +    DK   +   N   +  +   YA +GR  +  +   RMR  G+
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643

Query: 338 R 338
           +
Sbjct: 644 K 644



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
           G  D+   N  IS Y + G   ++L VF ++   + V++N +I GY +NG  E A + F+
Sbjct: 60  GDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFD 119

Query: 331 RM 332
            M
Sbjct: 120 EM 121


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 172/477 (36%), Positives = 278/477 (58%), Gaps = 37/477 (7%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T    CG   D      + F+   D + ++ + +I  +A+     EA+ LF  M L 
Sbjct: 254 ALVTMYGKCGCLDDAL----KTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLN 309

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
             +PSEFTF  VI + + +  L  GKQ+H ++ K G +  ++  +A++D+Y K  S+ +A
Sbjct: 310 GNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDA 369

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            + F+    P++V                                W +MI GY+Q G NE
Sbjct: 370 RKGFDYLKEPDIVL-------------------------------WTSMISGYAQNGENE 398

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
            A+ L+  M  E ++P+  T+   + A +++AAL  GK  HA  +K+   L+V +G++L 
Sbjct: 399 TALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALS 458

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + YAKCGS+ED  LVF ++  R+I+TWNA+I G +QNG G +A+E FE +R    +P+ V
Sbjct: 459 TMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYV 518

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLY 401
           T + +L AC+H GLVE+G  YF +  L++ G++ + EHYACMVD+LSR+G+  E KEF+ 
Sbjct: 519 TFVNVLSACSHMGLVERGKVYF-RMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIE 577

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
               D G+  W+ LLG C+ + N ELG +A  +++ L  ++ S+Y++LS+  +  G+ D+
Sbjct: 578 SATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDD 637

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           V  +RR MK +G+ + PGCSWIE+KS+VHVFV GD+ H    +I + LR   + +++
Sbjct: 638 VERVRRLMKLRGVNKEPGCSWIELKSQVHVFVVGDQIHPQIVKICSELRRLRDHMKD 694



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 195/423 (46%), Gaps = 52/423 (12%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + LL  C     L K   +H+     L+ T   S   L T ++      CGS        
Sbjct: 14  VDLLLRCTRQKDLQKGKAIHA----QLLRTGSFSSVYL-TNSLVNLYAKCGS----IVKA 64

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHH--YEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
             VF+ + + +VVS   +I  ++++    Y   + LF RM   N  P+  TF  V  +++
Sbjct: 65  KLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAAS 124

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           +  +   G Q HA A K     +VFVGS+++++Y K+                       
Sbjct: 125 SSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIG---------------------- 162

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             C L       DA K+F  +P RN VSW  +I GY+      EA  LF  M RE    +
Sbjct: 163 --CML-------DARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHD 213

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF-VGNSLISFYAKCGSMEDSLLVF 298
                  + A      +  GK  H  A+K  G L +  VGN+L++ Y KCG ++D+L  F
Sbjct: 214 KFIYTSVLSALTVPDLVHYGKQIHCLALKN-GLLSIASVGNALVTMYGKCGCLDDALKTF 272

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           +   +++ +TW+A+I GYAQ G   EA+  F  M +NG +P+  T +G++ AC+  G +E
Sbjct: 273 ELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALE 332

Query: 359 KG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           +G   + Y  +A  E     +      +VD+ ++ G   +A++  +D   +P I  W ++
Sbjct: 333 EGKQIHGYSLKAGYE----CQIYFMTALVDMYAKCGSLVDARKG-FDYLKEPDIVLWTSM 387

Query: 416 LGG 418
           + G
Sbjct: 388 ISG 390



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 109/237 (45%), Gaps = 33/237 (13%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M L  + P   +F  ++   T  +DL  GK +HA   + G  S+V++ +++++LY K  S
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           I +A  VFE   N +VVS                               WN +I GYSQ 
Sbjct: 61  IVKAKLVFESITNKDVVS-------------------------------WNCLINGYSQK 89

Query: 219 GR--NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
           G       + LF  M  E  +PN  T      AA++      G   HA A+K     DVF
Sbjct: 90  GTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVF 149

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           VG+SLI+ Y K G M D+  VFD + ERN V+W  +I GYA      EA E F  MR
Sbjct: 150 VGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMR 206



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L P H +    ++       L  GK+ HA  ++      V++ NSL++ YAKCGS+  + 
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEA--IEFFERMRINGIRPNGVTLLGLLWA 350
           LVF+ +T +++V+WN +I GY+Q G    +  +E F+RMR     PNG T  G+  A
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTA 122


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 270/457 (59%), Gaps = 33/457 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VF+   + N ++ + +I  +A+    + A+ +FS+M      P+EFTF  V+ +S+ L 
Sbjct: 276 HVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLG 335

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L +GKQ H    K+G +  ++V SA++D+Y K                          C
Sbjct: 336 ALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAK--------------------------C 369

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G +      DA + F ++   ++V W AM+ G+ Q G +EEA+ L+  M +EG++P+ ST
Sbjct: 370 GCIA-----DAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKST 424

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A IAAL  GK  H   VK+   L   VG++L + Y+KCG++ED + VF ++ 
Sbjct: 425 IASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIP 484

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +R+++ WN++I G++QNG G  A++ FE M++ G  P+ +T + +L AC+H GLV++G+ 
Sbjct: 485 DRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWE 544

Query: 363 YFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YFS    +D G+  + +HYACMVD+LSR+G  KEAK+F+  +  D G   W+ +LG C+ 
Sbjct: 545 YFSLMT-KDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRS 603

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
             + ++G +A  R++ L   D S+Y++LSN  +   KW++V  +R  M+ +G+ + PGCS
Sbjct: 604 LRDFDVGAYAGERLMELGTRDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCS 663

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+E+ S+VHVFV G++ H   + I A LR   + +++
Sbjct: 664 WVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKD 700



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 176/370 (47%), Gaps = 47/370 (12%)

Query: 58  FSSVHQVFDEVPDL--NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSV 114
            ++   VFD++P    +V S  +++   ++ H   +A+  F  ML  + + PS  +F + 
Sbjct: 65  LAAAFAVFDDIPPAARDVASWNSLLNPLSR-HRPLDALSRFRSMLSSSTVLPSPHSFAAA 123

Query: 115 IPSSTALEDLNLGKQLHAWATKV-GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
             ++        G   HA A K+    SNV+V +++L++Y KL  + +A R+F+      
Sbjct: 124 FTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDG----- 178

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                                     MP RN  SW+ M+ GY+    +EEA +LF  ML 
Sbjct: 179 --------------------------MPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLE 212

Query: 234 EGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSM 291
           E        +  A+++A ++   L MG+  H   VK  G LD V V NSL++ YAK G M
Sbjct: 213 ECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD-GLLDFVSVENSLVTMYAKAGCM 271

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             +  VF+   ERN +TW+A+I GYAQNG  + A+  F +M   G  P   T +G+L A 
Sbjct: 272 GAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNAS 331

Query: 352 NHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           +  G +  G   +    +   E    +K    + +VD+ ++ G   +AKE  +D  ++  
Sbjct: 332 SDLGALAVGKQAHGLMVKLGFEVQIYVK----SALVDMYAKCGCIADAKEG-FDQLYEVD 386

Query: 409 IGFWKALLGG 418
           I  W A++ G
Sbjct: 387 IVLWTAMVSG 396



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 34/210 (16%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+ LHAWA K G  S+  V +++++ Y  L                              
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSL-----------------------------P 61

Query: 187 RERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTL 243
           R     A  +F ++P   R+V SWN+++   S+  R  +A++ F  ML    V P+  + 
Sbjct: 62  RPLLAAAFAVFDDIPPAARDVASWNSLLNPLSRH-RPLDALSRFRSMLSSSTVLPSPHSF 120

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKL-DVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
             A  AAA  A+   G + HA A K    + +V+V  SL++ Y K G + D+  +FD + 
Sbjct: 121 AAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMP 180

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           +RN  +W+ ++ GYA     EEA + F  M
Sbjct: 181 QRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 280/457 (61%), Gaps = 1/457 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD++P+ +VVS  T++   A+  +++EA+  +S    L I+ + F+F  V+     L+
Sbjct: 147 KLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLK 206

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           ++ L +Q+H      G  SNV + S++LD Y+K   + +A ++F++    +V+++TTM+ 
Sbjct: 207 EVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVS 266

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G  K    + A +LF EMP +N VSW A+I GY++ G   +A+ LF +M+   + P+  T
Sbjct: 267 GYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFT 326

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A A+IA+L  GK  HA  ++   + +  V ++LI  Y+KCGS+     VFD + 
Sbjct: 327 FSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMG 386

Query: 303 ER-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            + ++V WN +I   AQ+G GEEAI+  + M  +G +P+ +T + +L AC+H+GLV++G 
Sbjct: 387 NKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGL 446

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           ++F     +   +   EHYAC++DLL R+G F+E  + L  +P+ P    W ALLG C+I
Sbjct: 447 NFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRI 506

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H ++ELG  AA R++ L+P+  ++YV+LS+  +V G+W++V  +R+ M E+ + +    S
Sbjct: 507 HGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAIS 566

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+EI++KVH F   D +H + ++IY+VL     Q+ E
Sbjct: 567 WLEIENKVHSFSVSDSSHPLKEQIYSVLEQLAGQMEE 603



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 185/420 (44%), Gaps = 52/420 (12%)

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           I +  K++   EA+     +    +R    T  S++        L  GK++H      GL
Sbjct: 31  IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGL 90

Query: 140 Q-SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           +    F+ + ++++Y K     EA +VF+     N+ S+  M+ G  K    + A KLF 
Sbjct: 91  KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFD 150

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +MP ++VVSWN M+  ++Q G  +EA+  + E  + G+  N  +    +     +  +G+
Sbjct: 151 KMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGL 210

Query: 259 GKSFHA--CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT-------------- 302
            +  H       FL   +V + +S++  Y KCG M D+  +FD+++              
Sbjct: 211 TRQVHGQILVAGFLS--NVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGY 268

Query: 303 -----------------ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
                            E+N V+W A+I GYA+NG G +A+E F +M +  +RP+  T  
Sbjct: 269 AKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFS 328

Query: 346 GLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
             L AC     ++ G   ++Y  +   +   ++     + ++D+ S+ G     ++    
Sbjct: 329 SCLCACASIASLKHGKQIHAYLLRINFQPNTIV----VSALIDMYSKCGSLGIGRKVFDL 384

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL-----DPEDVSSYVMLSNALSVAG 457
           +     +  W  ++     H     GE A + +  +      P+ + ++V++ NA S +G
Sbjct: 385 MGNKLDVVLWNTIISALAQHG---CGEEAIQMLDDMVRSGAKPDKI-TFVVILNACSHSG 440



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 113/208 (54%), Gaps = 6/208 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  ++     S +++F E+P+ N VS T +I  +A+     +A+ LF++M+L ++R
Sbjct: 262 TTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVR 321

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P +FTF S + +  ++  L  GKQ+HA+  ++  Q N  V SA++D+Y K  S+    +V
Sbjct: 322 PDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKV 381

Query: 166 FEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGR 220
           F+   N  +VV + T+I  L +    E+A+++  +M         +++  ++   S +G 
Sbjct: 382 FDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGL 441

Query: 221 NEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
            ++ +N F  M  + G+VP+     C I
Sbjct: 442 VQQGLNFFESMSCDYGIVPSQEHYACLI 469


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/548 (33%), Positives = 303/548 (55%), Gaps = 40/548 (7%)

Query: 3   QLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH 62
           +++ + +++  LN++ ++H+L     ++     + KL          +C S +D   +  
Sbjct: 5   KVMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLF-----ACSSANDLLYA-R 58

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-SEFTFGSVIPSSTAL 121
            VFDE+P  +     T+I  +    + +E++ LF +M      P   ++   VI +   L
Sbjct: 59  SVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRL 118

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           +D   G++LH    K+GL S++FV +A++++Y K   IE A  + ++  +P++V Y  ++
Sbjct: 119 KDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLL 178

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG---------------------- 219
              ++      A  LF  MP R++VSWN MI G++  G                      
Sbjct: 179 AEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSS 238

Query: 220 ---------RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
                    ++ EA+ LF EM    ++P+  T+   + A  ++ ALGMGK  H C  +  
Sbjct: 239 MIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNR 298

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            ++D+ +G SL+  YAKCG +++SL VF+ +  R++  W+A+I G A +G GE A++ F 
Sbjct: 299 IEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFS 358

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF-SQAKLEDPGMLKPEHYACMVDLLSR 389
           +M    I+PN VT +G+L AC+H GLV++G++YF S +K+ D    K EHY C+VD+L R
Sbjct: 359 KMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSP-KIEHYGCVVDILGR 417

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML 449
           +GR +EA E +  +PF P    W+ALLG C+I+ NVE+ E A   +L L+P    +YV+L
Sbjct: 418 AGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLL 477

Query: 450 SNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           SN  S A +WD V N+RR MK   + +VPG S IE+ + VH FV GD++H  + +I  +L
Sbjct: 478 SNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRML 537

Query: 510 RSCTEQIR 517
              T +++
Sbjct: 538 SEITARLK 545


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/500 (33%), Positives = 276/500 (55%), Gaps = 41/500 (8%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +S  +VFDE+P+ NV+    +I  +     Y E + +F  M   N+RP  +TF  V+ + 
Sbjct: 91  ASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKAC 150

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           +    + +G+++H  ATKVGL S +FVG+ ++ +Y K   + EA  V ++    +VVS+ 
Sbjct: 151 SCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWN 210

Query: 179 TMICGLLKRERFEDALKLFQEMP------------------------------------- 201
           +++ G  + +RF+DAL++ +EM                                      
Sbjct: 211 SLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG 270

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            +++VSWN MIG Y +     EAV L+  M  +G  P+  ++   + A  + +AL +GK 
Sbjct: 271 KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKK 330

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            H    +     ++ + N+LI  YAKCG +E +  VF+ +  R++V+W A+I  Y  +GR
Sbjct: 331 IHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EH 379
           G +A+  F +++ +G+ P+ +  +  L AC+H GL+E+G S F    + D   + P  EH
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL--MTDHYKITPRLEH 448

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
            ACMVDLL R+G+ KEA  F+ D+  +P    W ALLG C++HS+ ++G  AA ++  L 
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           PE    YV+LSN  + AG+W+ V+NIR  MK KG+ + PG S +E+   +H F+ GDR+H
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568

Query: 500 HMNDEIYAVLRSCTEQIREF 519
             +DEIY  L    ++++E 
Sbjct: 569 PQSDEIYRELDVLVKKMKEL 588



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 1/216 (0%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEA-TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           Q  VF+   +LD Y  + ++    +R+  +    N      ++      +    A K+F 
Sbjct: 39  QETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFD 98

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           E+P RNV+  N MI  Y   G   E V +F  M    + P+H T PC + A +    + +
Sbjct: 99  EIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVI 158

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+  H  A K      +FVGN L+S Y KCG + ++ LV D+++ R++V+WN+++ GYAQ
Sbjct: 159 GRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           N R ++A+E    M    I  +  T+  LL A ++T
Sbjct: 219 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +G  L+  YA    +  +  VFD++ ERN++  N +I  Y  NG   E ++ F  M    
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 337 IRPNGVTLLGLLWACNHTGLVEKG 360
           +RP+  T   +L AC+ +G +  G
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIG 159


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 259/450 (57%), Gaps = 33/450 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  ++FDE+P  +VVS   +I  +A+  +Y+EA+ LF  M+  N++P E T  +V+ +  
Sbjct: 187 SAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACA 246

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               + LG+Q+H+W    G  SN+ + +A++DLYIK   +E A+ +FE            
Sbjct: 247 QSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEG----------- 295

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                               + +++V+SWN +IGGY+     +EA+ LF EMLR G  PN
Sbjct: 296 --------------------LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 335

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLV 297
             T+   + A A++ A+ +G+  H    K L  +     +  SLI  YAKCG +E +  V
Sbjct: 336 EVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQV 395

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD +  R++ +WNA+I G+A +GR   A + F RMR +GI P+ +T +GLL AC+H+G++
Sbjct: 396 FDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGML 455

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + G   F     +     K EHY CM+DLL  SG FKEA+E +  +  DP    W +LL 
Sbjct: 456 DLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLK 515

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H NVELGE  A+ ++ ++P++  SYV+LSN  + AG+W+ V+  R  + +KGM +V
Sbjct: 516 ACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKV 575

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           PGCS IEI S VH F+ GD+ H  N EIY 
Sbjct: 576 PGCSSIEIDSVVHEFIIGDKLHPRNREIYG 605



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 229/423 (54%), Gaps = 13/423 (3%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D  +    VFD + + N++   T+    A       A+YL+  M+ L + P+ +TF  ++
Sbjct: 51  DGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLL 110

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            +    +    G+Q+H    K+G   +++V ++++ +Y+K    E+A +VF+ + + +VV
Sbjct: 111 KACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVV 170

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           SYT +I G         A K+F E+P ++VVSWNA+I GY++TG  +EA+ LF EM++  
Sbjct: 171 SYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTN 230

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+ ST+   + A A  A++ +G+  H+         ++ + N+LI  Y KCG +E + 
Sbjct: 231 VKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAS 290

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +F+ L+ +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H G
Sbjct: 291 GLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLG 350

Query: 356 LVEKG---YSYFSQ--AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            ++ G   + Y  +    + +P  L+      ++D+ ++ G   EA + ++D   +  + 
Sbjct: 351 AIDIGRWIHVYIDKRLKGVSNPSSLR----TSLIDMYAKCGDI-EAAQQVFDSMLNRSLS 405

Query: 411 FWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
            W A++ G  +H  +N     F+  R   ++P+D+ ++V L +A S +G  D   +I R 
Sbjct: 406 SWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDI-TFVGLLSACSHSGMLDLGRHIFRS 464

Query: 469 MKE 471
           M E
Sbjct: 465 MTE 467


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/500 (33%), Positives = 276/500 (55%), Gaps = 41/500 (8%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +S  +VFDE+P+ NV+    +I  +     Y E + +F  M   N+RP  +TF  V+ + 
Sbjct: 91  ASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKAC 150

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           +    + +G+++H  ATKVGL S +FVG+ ++ +Y K   + EA  V ++    +VVS+ 
Sbjct: 151 SCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWN 210

Query: 179 TMICGLLKRERFEDALK-------------------------------------LFQEMP 201
           +++ G  + +RF+DAL+                                     +F +M 
Sbjct: 211 SLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG 270

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            +++VSWN MIG Y +     EAV L+  M  +G  P+  ++   + A  + +AL +GK 
Sbjct: 271 KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKK 330

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            H    +     ++ + N+LI  YAKCG +E +  VF+ +  R++V+W A+I  Y  +GR
Sbjct: 331 IHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGR 390

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EH 379
           G +A+  F +++ +G+ P+ +  +  L AC+H GL+E+G S F    + D   + P  EH
Sbjct: 391 GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL--MTDHYKITPRLEH 448

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
            ACMVDLL R+G+ KEA  F+ D+  +P    W ALLG C++HS+ ++G  AA ++  L 
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           PE    YV+LSN  + AG+W+ V+NIR  MK KG+ + PG S +E+   +H F+ GDR+H
Sbjct: 509 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 568

Query: 500 HMNDEIYAVLRSCTEQIREF 519
             +DEIY  L    ++++E 
Sbjct: 569 PQSDEIYRELDVLVKKMKEL 588



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 1/216 (0%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEA-TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           Q  VF+   +LD Y  + ++    +R+  +    N      ++      +    A K+F 
Sbjct: 39  QETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFD 98

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           E+P RNV+  N MI  Y   G   E V +F  M    + P+H T PC + A +    + +
Sbjct: 99  EIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVI 158

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+  H  A K      +FVGN L+S Y KCG + ++ LV D+++ R++V+WN+++ GYAQ
Sbjct: 159 GRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQ 218

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           N R ++A+E    M    I  +  T+  LL A ++T
Sbjct: 219 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 254



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 43/84 (51%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +G  L+  YA    +  +  VFD++ ERN++  N +I  Y  NG   E ++ F  M    
Sbjct: 76  LGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN 135

Query: 337 IRPNGVTLLGLLWACNHTGLVEKG 360
           +RP+  T   +L AC+ +G +  G
Sbjct: 136 VRPDHYTFPCVLKACSCSGTIVIG 159


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 270/457 (59%), Gaps = 33/457 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VF+   + N ++ + +I  +A+    + A+ +FS+M      P+EFTF  V+ +S+ L 
Sbjct: 170 HVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLG 229

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L +GKQ H    K+G +  ++V SA++D+Y K                          C
Sbjct: 230 ALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAK--------------------------C 263

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G +      DA + F ++   ++V W AM+ G+ Q G +EEA+ L+  M +EG++P+ ST
Sbjct: 264 GCIA-----DAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKST 318

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A IAAL  GK  H   VK+   L   VG++L + Y+KCG++ED + VF ++ 
Sbjct: 319 IASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIP 378

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +R+++ WN++I G++QNG G  A++ FE M++ G  P+ +T + +L AC+H GLV++G+ 
Sbjct: 379 DRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWE 438

Query: 363 YFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YFS    +D G+  + +HYACMVD+LSR+G  KEAK+F+  +  D G   W+ +LG C+ 
Sbjct: 439 YFSLMT-KDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRS 497

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
             + ++G +A  R++ L   D S+Y++LSN  +   KW++V  +R  M+ +G+ + PGCS
Sbjct: 498 LRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCS 557

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+E+ S+VHVFV G++ H   + I A LR   + +++
Sbjct: 558 WVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKD 594



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 168/361 (46%), Gaps = 34/361 (9%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPS 117
           S   +VFD +P  N  S +T++  +A +   EEA  LF  ML       SEF   +V+ +
Sbjct: 64  SDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSA 123

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            +    L +G+Q+H    K GL   V V ++++ +Y K   +  A  VFE +   N +++
Sbjct: 124 VSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITW 183

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           + MI G                               Y+Q G  + AV++F +M   G  
Sbjct: 184 SAMITG-------------------------------YAQNGEADSAVSMFSQMHAAGFT 212

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P   T    + A++++ AL +GK  H   VK   ++ ++V ++L+  YAKCG + D+   
Sbjct: 213 PTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEG 272

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD+L E +IV W A++ G+ QNG  EEA+  + RM   GI P+  T+   L AC     +
Sbjct: 273 FDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAAL 332

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           E G    +Q      G+  P   A +  + S+ G  ++       +P D  +  W +++ 
Sbjct: 333 EPGKQLHTQIVKYGLGLGAPVGSA-LSTMYSKCGNLEDGMSVFRRIP-DRDVIAWNSIIS 390

Query: 418 G 418
           G
Sbjct: 391 G 391



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 152/322 (47%), Gaps = 43/322 (13%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV-GLQSNVFVGSAILDLYIKLSSIEE 161
            + PS  +F +   ++        G   HA A K+    SNV+V +++L++Y KL  + +
Sbjct: 6   TVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSD 65

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           A RVF+                                MP RN  SW+ M+ GY+    +
Sbjct: 66  ARRVFDG-------------------------------MPQRNSFSWSTMVAGYAAEKCS 94

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLD-VFVGN 279
           EEA +LF  ML E        +  A+++A ++   L MG+  H   VK  G LD V V N
Sbjct: 95  EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD-GLLDFVSVEN 153

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           SL++ YAK G M  +  VF+   ERN +TW+A+I GYAQNG  + A+  F +M   G  P
Sbjct: 154 SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTP 213

Query: 340 NGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
              T +G+L A +  G +  G   +    +   E    +K    + +VD+ ++ G   +A
Sbjct: 214 TEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVK----SALVDMYAKCGCIADA 269

Query: 397 KEFLYDLPFDPGIGFWKALLGG 418
           KE  +D  ++  I  W A++ G
Sbjct: 270 KEG-FDQLYEVDIVLWTAMVSG 290


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 269/467 (57%), Gaps = 35/467 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D       +F+++   +++S T +IG  AK     EA+ +F  M    ++P+  T
Sbjct: 494 CGSIKD----ARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVT 549

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + S++ + ++   L+ G+++H    + GL ++  V + ++++Y                 
Sbjct: 550 YTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMY----------------- 592

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                     +CG +K     DA ++F  M  R++V++NAMIGGY+     +EA+ LF  
Sbjct: 593 ---------SMCGSVK-----DARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDR 638

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           +  EGL P+  T    + A AN  +L   K  H+  +K     D  +GN+L+S YAKCGS
Sbjct: 639 LQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGS 698

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
             D+LLVFDK+ +RN+++WNA+I G AQ+GRG++ ++ FERM++ GI+P+ VT + LL A
Sbjct: 699 FSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSA 758

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H GL+E+G  YF     +       EHY CMVDLL R+G+  E +  +  +PF     
Sbjct: 759 CSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTR 818

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALLG C+IH NV + E AA   L LDP++ + YV LS+  + AG WD+ + +R+ M+
Sbjct: 819 IWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLME 878

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           ++G+T+ PG SWIE+  K+H FV  DR+H  +++IYA L   T  ++
Sbjct: 879 QRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMK 925



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/409 (30%), Positives = 217/409 (53%), Gaps = 45/409 (11%)

Query: 57  KFSSVHQ---VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           K  S+H+   VFD++   +VVS T IIG +A   H E A  +F +M    + P+  T+ +
Sbjct: 291 KCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYIN 350

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ + +    L  GK +H+     G +S++ VG+A++ +Y K                  
Sbjct: 351 VLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAK------------------ 392

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                   CG      ++D  ++F+++ +R++++WN MIGG ++ G  EEA  ++ +M R
Sbjct: 393 --------CG-----SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQR 439

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG++PN  T    + A  N  AL  G+  H+  VK     D+ V N+LIS YA+CGS++D
Sbjct: 440 EGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKD 499

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + L+F+K+  ++I++W A+I G A++G G EA+  F+ M+  G++PN VT   +L AC+ 
Sbjct: 500 ARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSS 559

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
              ++ G     Q  + + G+    H A  +V++ S  G  K+A++ ++D      I  +
Sbjct: 560 PAALDWGRRIHQQ--VIEAGLATDAHVANTLVNMYSMCGSVKDARQ-VFDRMTQRDIVAY 616

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPE----DVSSYVMLSNALSVAG 457
            A++GG   H+   LG+ A +    L  E    D  +Y+ + NA + +G
Sbjct: 617 NAMIGGYAAHN---LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 662



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 194/431 (45%), Gaps = 42/431 (9%)

Query: 49  VSCGSESDKFSSVHQVFDEV--PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP 106
           + CGS         QV++++   +  V S   ++  + +  + EEA+ L   M    +  
Sbjct: 187 IQCGS----IEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
              T   ++ S  +   L  G+++H  A K  L  +V V + IL++Y K  SI EA  VF
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVF 302

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
           +     +VVS+T +I G       E A ++FQ+M                          
Sbjct: 303 DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQ------------------------- 337

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
                 +EG+VPN  T    + A +  AAL  GK+ H+  +    + D+ VG +L+  YA
Sbjct: 338 ------QEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYA 391

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCGS +D   VF+KL  R+++ WN +I G A+ G  EEA E + +M+  G+ PN +T + 
Sbjct: 392 KCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVI 451

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           LL AC +   +  G    S+  ++D  M        ++ + +R G  K+A+  L++    
Sbjct: 452 LLNACVNPTALHWGREIHSRV-VKDGFMFDISVQNALISMYARCGSIKDAR-LLFNKMVR 509

Query: 407 PGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
             I  W A++GG          L  F   +   L P  V +Y  + NA S     D    
Sbjct: 510 KDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRV-TYTSILNACSSPAALDWGRR 568

Query: 465 IRREMKEKGMT 475
           I +++ E G+ 
Sbjct: 569 IHQQVIEAGLA 579



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 168/376 (44%), Gaps = 77/376 (20%)

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           R +   +  ++     ++DL  G+++H    +     + +  +A++++YI+  SIEEA +
Sbjct: 138 RVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQ 197

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           V+      N +++T                        R V SWNAM+ GY Q G  EEA
Sbjct: 198 VW------NKLNHT-----------------------ERTVHSWNAMVVGYVQYGYIEEA 228

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           + L  EM + GL    +T    + +  + +AL  G+  H  A+K     DV V N +++ 
Sbjct: 229 LKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNM 288

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YAKCGS+ ++  VFDK+  +++V+W  +I GYA  G  E A E F++M+  G+ PN +T 
Sbjct: 289 YAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITY 348

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA------CMVDLLSRSGRFKEAKE 398
           + +L A +    ++ G +  S        +L   H +       +V + ++ G +K+ ++
Sbjct: 349 INVLNAFSGPAALKWGKTVHSH-------ILNAGHESDLAVGTALVKMYAKCGSYKDCRQ 401

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
               L  +  +  W  ++GG                                  L+  G 
Sbjct: 402 VFEKL-VNRDLIAWNTMIGG----------------------------------LAEGGN 426

Query: 459 WDNVSNIRREMKEKGM 474
           W+  S I  +M+ +GM
Sbjct: 427 WEEASEIYHQMQREGM 442



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 13/130 (10%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLA--PNYLIETQKASVQKLETPAIRTDSVSCGSESDKFS 59
           I +L  C +S SL    ++HSL     YL +T   +       A+ +    CGS    FS
Sbjct: 652 INMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGN-------ALVSTYAKCGS----FS 700

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
               VFD++   NV+S   IIG  A+    ++ + LF RM +  I+P   TF S++ + +
Sbjct: 701 DALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACS 760

Query: 120 ALEDLNLGKQ 129
               L  G++
Sbjct: 761 HAGLLEEGRR 770


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/443 (38%), Positives = 251/443 (56%), Gaps = 31/443 (6%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS   +I   A+    +EAI  F  M +  ++  ++ FGSV+P+   L  +N GKQ+HA 
Sbjct: 236 VSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHAC 295

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             +   Q +++VGSA++D+Y K   +  A  VF+                          
Sbjct: 296 IIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFD-------------------------- 329

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
                 M  +NVVSW AM+ GY QTGR EEAV +F++M R G+ P+H TL  AI A AN+
Sbjct: 330 -----RMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANV 384

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           ++L  G  FH  A+       V V NSL++ Y KCG ++DS  +F+++  R+ V+W A++
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMV 444

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
             YAQ GR  E I+ F++M  +G++P+GVTL G++ AC+  GLVEKG  YF     E   
Sbjct: 445 SAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGI 504

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
           +    HY+CM+DL SRSGR +EA  F+  +PF P    W  LL  C+   N+E+G++AA 
Sbjct: 505 VPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAE 564

Query: 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFV 493
            ++ LDP   + Y +LS+  +  GKWD+V+ +RR M+EK + + PG SWI+ K K+H F 
Sbjct: 565 SLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFS 624

Query: 494 TGDRNHHMNDEIYAVLRSCTEQI 516
             D +    D+IYA L     +I
Sbjct: 625 ADDESSPYLDQIYAKLEELNNKI 647



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 175/316 (55%), Gaps = 2/316 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTF 111
           S++   S +   F+++PD + V+   +I  ++       A+  ++ M+   +   +  T 
Sbjct: 83  SKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTL 142

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            +++  S++   ++LGKQ+H    K+G +S + VGS +L +Y  +  I +A +VF    +
Sbjct: 143 MTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDD 202

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            N V Y +++ GLL     EDAL+LF+ M  ++ VSW AMI G +Q G  +EA+  F EM
Sbjct: 203 RNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREM 261

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             +GL  +       + A   + A+  GK  HAC ++   +  ++VG++LI  Y KC  +
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             +  VFD++ ++N+V+W A++ GY Q GR EEA++ F  M+ +GI P+  TL   + AC
Sbjct: 322 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381

Query: 352 NHTGLVEKGYSYFSQA 367
            +   +E+G  +  +A
Sbjct: 382 ANVSSLEEGSQFHGKA 397



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 173/431 (40%), Gaps = 72/431 (16%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K +H    +       F+ + I+  Y  + S   A RVF+    PN+ S+  ++    K 
Sbjct: 26  KMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKA 85

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCA 246
               +    F+++P R+ V+WN +I GYS +G    AV  +  M+R+        TL   
Sbjct: 86  GLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTM 145

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           +  +++   + +GK  H   +K   +  + VG+ L+  YA  G + D+  VF  L +RN 
Sbjct: 146 LKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNT 205

Query: 307 ------------------------------VTWNAVICGYAQNGRGEEAIEFFERMRING 336
                                         V+W A+I G AQNG  +EAIE F  M++ G
Sbjct: 206 VMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG 265

Query: 337 IRPNGVTLLGLLWACNHTGLVEKG--------------YSYFSQAKLEDPGMLKPEHYA- 381
           ++ +      +L AC   G + +G              + Y   A ++     K  HYA 
Sbjct: 266 LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAK 325

Query: 382 ---------------CMVDLLSRSGRFKEAKEFLYDLP---FDPGIGFWKALLGGCQIHS 423
                           MV    ++GR +EA +   D+     DP        +  C   S
Sbjct: 326 TVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVS 385

Query: 424 NVELG-EFAARRILALDPEDVSSYVMLSNAL-SVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           ++E G +F  + I +     +  YV +SN+L ++ GK  ++ +  R   E  M      S
Sbjct: 386 SLEEGSQFHGKAITS----GLIHYVTVSNSLVTLYGKCGDIDDSTRLFNE--MNVRDAVS 439

Query: 482 WIEIKSKVHVF 492
           W  + S    F
Sbjct: 440 WTAMVSAYAQF 450


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 181/525 (34%), Positives = 298/525 (56%), Gaps = 30/525 (5%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           S+ +L ++H+    +L++T +     + T  +R   +S  S+         VFD++P+ N
Sbjct: 27  SMRELKQVHA----FLVKTGQTHDNAIATEILR---LSATSDFRDIGYALSVFDQLPERN 79

Query: 73  VVSATTIIGRFAK-QHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
             +  T+I   A+ Q  + +A+ +F +ML    + P++FTF SV+ +   +  L  GKQ+
Sbjct: 80  CFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQV 139

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF-------EDTHNP---------NV 174
           H    K GL  + FV + +L +Y+   S+E+A  +F       +D  N          NV
Sbjct: 140 HGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNV 199

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           V    M+ G  +    + A +LF  M  R+VVSWN MI GY+Q G  +EA+ +F  M++ 
Sbjct: 200 VLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQM 259

Query: 235 G-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           G ++PN  TL   + A + +  L +GK  H  A K   ++D  +G++L+  YAKCGS+E 
Sbjct: 260 GDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEK 319

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           ++ VF++L + N++TWNAVI G A +G+  +   +  RM   GI P+ VT + +L AC+H
Sbjct: 320 AIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSH 379

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
            GLV++G S+F+   + +   LKP  EHY CMVDLL R+G  +EA+E + ++P  P    
Sbjct: 380 AGLVDEGRSFFND--MVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVI 437

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           WKALLG  ++H N+++G  AA  ++ + P D  +YV LSN  + +G WD V+ +R  MK+
Sbjct: 438 WKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKD 497

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
             + + PGCSWIEI   +H F+  D +H    +I+++L   + ++
Sbjct: 498 MDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKL 542



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 180/401 (44%), Gaps = 90/401 (22%)

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P   A + +   KQ+HA+  K G   +  + + IL L         AT  F D      
Sbjct: 19  VPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRL--------SATSDFRD------ 64

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT-GRNEEAVNLFIEMLR 233
           + Y               AL +F ++P RN  +WN +I   ++T  R+ +A+ +F +ML 
Sbjct: 65  IGY---------------ALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLS 109

Query: 234 EGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           E  V PN  T P  + A A +A L  GK  H   +KF    D FV  +L+  Y  CGSME
Sbjct: 110 EATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSME 169

Query: 293 DSLL-----------------------------------------------VFDKLTERN 305
           D+ +                                               +FD++ +R+
Sbjct: 170 DANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRS 229

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFER-MRINGIRPNGVTLLGLLWACNHTGLVEKG---Y 361
           +V+WN +I GYAQNG  +EAIE F R M++  + PN VTL+ +L A +  G++E G   +
Sbjct: 230 VVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVH 289

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            Y  + K+    +L     + +VD+ ++ G  ++A +    LP +  I  W A++GG  +
Sbjct: 290 LYAEKNKIRIDDVLG----SALVDMYAKCGSIEKAIQVFERLPQNNVIT-WNAVIGGLAM 344

Query: 422 H--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           H  +N      +      + P DV +Y+ + +A S AG  D
Sbjct: 345 HGKANDIFNYLSRMEKCGISPSDV-TYIAILSACSHAGLVD 384


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/458 (37%), Positives = 264/458 (57%), Gaps = 33/458 (7%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++F  + + + +S T +I    +     EA+ +F  M L      +FTFGSV+ +  +L
Sbjct: 224 QRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSL 283

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  GKQ+HA+  +   + NVFVGSA++D+Y K  SI+ A  VF               
Sbjct: 284 LALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVF--------------- 328

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                           + MP +NV+SW AM+ GY Q G +EEAV +F EM R G+ P+  
Sbjct: 329 ----------------KRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDF 372

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSLLVFDK 300
           TL   I + AN+A+L  G  FH C     G +  + V N+LI+ Y KCGS E+S  +F +
Sbjct: 373 TLGSVISSCANLASLEEGAQFH-CRALVSGLISFITVSNALITLYGKCGSTENSHRLFTE 431

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +  R+ V+W A++ GYAQ G+  E I  FERM  +G++P+GVT +G+L AC+  GLVEKG
Sbjct: 432 MNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKG 491

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             YF     E   M   +H  C++DLL R+GR +EA+ F+ ++P  P +  W  LL  C+
Sbjct: 492 LQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCR 551

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H ++E+G++AA  ++AL+P++ +SYV+LS+  +  GKWD V+ +RR M++K + + PG 
Sbjct: 552 VHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGY 611

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           SWI+ K KVHVF   D++     +IYA L     ++ E
Sbjct: 612 SWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIE 649



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 216/406 (53%), Gaps = 12/406 (2%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML---LLNIRPSEFTFGSV 114
            S + Q+F+ +P  + VS    I  +A      +A+ ++  ML    +N+  +  TF ++
Sbjct: 87  LSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNL--NRITFSTM 144

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +   +    ++LG+Q++    K G  S+VFVGS ++D+Y KL  I +A R F++    NV
Sbjct: 145 LILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNV 204

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           V   TMI GL++    E++ +LF  +  R+ +SW  MI G  Q G   EA+++F EM   
Sbjct: 205 VMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLA 264

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G   +  T    + A  ++ ALG GK  HA  ++   K +VFVG++L+  Y+KC S++ +
Sbjct: 265 GFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSA 324

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VF ++ ++N+++W A++ GY QNG  EEA++ F  M+ NG+ P+  TL  ++ +C + 
Sbjct: 325 ETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANL 384

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
             +E+G  +  +A +   G++     +  ++ L  + G  + +     ++     +  W 
Sbjct: 385 ASLEEGAQFHCRALVS--GLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVS-WT 441

Query: 414 ALLGG-CQI-HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           ALL G  Q   +N  +G F       L P+ V +++ + +A S AG
Sbjct: 442 ALLAGYAQFGKANETIGLFERMLAHGLKPDGV-TFIGVLSACSRAG 486



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 148/343 (43%), Gaps = 40/343 (11%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + S++      ++    K+LH    K   Q   F+ + ++  Y KL ++  A  VF+   
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
            PN+ S+ T++    K        ++F  MP R+ VSWN  I GY+  G   +AV ++  
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 231 MLREGLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           ML++  +  N  T    +I  +    + +G+  +   +KF    DVFVG+ L+  Y K G
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 290 SMEDSLLVFDKLTERNIV-------------------------------TWNAVICGYAQ 318
            + D+   FD++ ERN+V                               +W  +I G  Q
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGML 375
           NG   EA++ F  MR+ G   +  T   +L AC     + +G   ++Y  +   +D   +
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                + +VD+ S+    K A+     +P    I  W A+L G
Sbjct: 308 G----SALVDMYSKCRSIKSAETVFKRMPQKNVIS-WTAMLVG 345


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 262/455 (57%), Gaps = 4/455 (0%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E    +    VFD +   N V   T+I  ++  +  EEA+ L+ +ML  +I  + +TF  
Sbjct: 57  EFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPF 116

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++ + +AL  L    Q+H    K G  S V+  +++L +Y    SI+ A  +F+   + +
Sbjct: 117 LLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRD 176

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           +VS+ TMI G +K    E A K+FQ MP +NV+SW +MI G+ +TG ++EA+ L  +ML 
Sbjct: 177 IVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLV 236

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+ P+  TL C++ A A + AL  GK  H    K   K+D  +G +LI  Y KCG M+ 
Sbjct: 237 AGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKK 296

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +LLVF KL ++ + TW A+I G+A +G+G EA+++F +M+  GI+P   T   +L AC+H
Sbjct: 297 ALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSH 356

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           TGLVE+G S F    +     +KP  EHY CMVDLL R+G  KEAKEF+  +P  P    
Sbjct: 357 TGLVEEGKSLFES--MSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAI 414

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W +LL  C +H ++ELG+   + ++ LDPE    Y+ L++  + AG+WD  S +R  +K 
Sbjct: 415 WGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKN 474

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           KG+  +PGCS I +    H F  G   H    E+Y
Sbjct: 475 KGLLNLPGCSTITLNGVAHEFFAGAEPHPHVREMY 509



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 148/313 (47%), Gaps = 28/313 (8%)

Query: 125 NLG--KQLHAWATKVGLQSNVFVGSAILDLY--IKLSSIEEATRVFEDTHNPNVVSYTTM 180
           N+G  KQ+H    K G   +    S +L  Y  ++ S++  A  VF+   +PN V + TM
Sbjct: 23  NIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTM 82

Query: 181 ICGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG- 235
           I         E+AL L+ +M H     N  ++  ++   S      E   + +++++ G 
Sbjct: 83  IRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGF 142

Query: 236 ---LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              +   +S L    I+       G  KS H      L   D+   N++I  Y KCG++E
Sbjct: 143 GSEVYATNSLLRVYAIS-------GSIKSAHVL-FDLLPSRDIVSWNTMIDGYIKCGNVE 194

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  +F  + E+N+++W ++I G+ + G  +EA+   ++M + GI+P+ +TL   L AC 
Sbjct: 195 MAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACA 254

Query: 353 HTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
             G +E+G   ++Y  + K++    + P     ++D+  + G  K+A      L     +
Sbjct: 255 GLGALEQGKWIHTYIGKNKIK----IDPVLGCALIDMYVKCGEMKKALLVFSKLE-KKCV 309

Query: 410 GFWKALLGGCQIH 422
             W A++GG  +H
Sbjct: 310 YTWTAIIGGFAVH 322


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 270/457 (59%), Gaps = 33/457 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VF+   + N ++ + +I  +A+    + A+ +FS+M      P+EFTF  V+ +S+ L 
Sbjct: 276 HVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLG 335

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L +GKQ H    K+G +  ++V SA++D+Y K                          C
Sbjct: 336 ALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAK--------------------------C 369

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G +      DA + F ++   ++V W AM+ G+ Q G +EEA+ L+  M +EG++P+ ST
Sbjct: 370 GCIA-----DAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKST 424

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A IAAL  GK  H   VK+   L   VG++L + Y+KCG++ED + VF ++ 
Sbjct: 425 IASGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIP 484

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +R+++ WN++I G++QNG G  A++ FE M++ G  P+ +T + +L AC+H GLV++G+ 
Sbjct: 485 DRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWE 544

Query: 363 YFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YFS    +D G+  + +HYACMVD+LSR+G  KEAK+F+  +  D G   W+ +LG C+ 
Sbjct: 545 YFSLMT-KDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRS 603

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
             + ++G +A  R++ L   D S+Y++LSN  +   KW++V  +R  M+ +G+ + PGCS
Sbjct: 604 LRDFDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCS 663

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+E+ S+VHVFV G++ H   + I A LR   + +++
Sbjct: 664 WVELNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKD 700



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 175/370 (47%), Gaps = 47/370 (12%)

Query: 58  FSSVHQVFDEVPDL--NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSV 114
            ++   VFD++P    +V S  +++   +  H   +A+  F  ML  + + PS  +F + 
Sbjct: 65  LAAAFAVFDDIPPAARDVTSWNSLLNPLSG-HRPLDALSRFRSMLSSSTVLPSPHSFAAA 123

Query: 115 IPSSTALEDLNLGKQLHAWATKV-GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
             ++        G   HA A K+    SNV+V +++L++Y KL  + +A RVF+      
Sbjct: 124 FTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDG----- 178

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                                     MP RN  SW+ M+ GY+    +EEA +LF  ML 
Sbjct: 179 --------------------------MPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLE 212

Query: 234 EGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSM 291
           E        +  A+++A ++   L MG+  H   VK  G LD V V NSL++ YAK G M
Sbjct: 213 ECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD-GLLDFVSVENSLVTMYAKAGCM 271

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             +  VF+   ERN +TW+A+I GYAQNG  + A+  F +M   G  P   T +G+L A 
Sbjct: 272 GAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNAS 331

Query: 352 NHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           +  G +  G   +    +   E    +K    + +VD+ ++ G   +AKE  +D  ++  
Sbjct: 332 SDLGALAVGKQAHGLMVKLGFEVQIYVK----SALVDMYAKCGCIADAKEG-FDQLYEVD 386

Query: 409 IGFWKALLGG 418
           I  W A++ G
Sbjct: 387 IVLWTAMVSG 396



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 34/210 (16%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+ LHAWA K G  S+  V +++++ Y  L                              
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSL-----------------------------P 61

Query: 187 RERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTL 243
           R     A  +F ++P   R+V SWN+++   S   R  +A++ F  ML    V P+  + 
Sbjct: 62  RPLLAAAFAVFDDIPPAARDVTSWNSLLNPLSGH-RPLDALSRFRSMLSSSTVLPSPHSF 120

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKL-DVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
             A  AAA  A+   G + HA A K    + +V+V  SL++ Y K G + D+  VFD + 
Sbjct: 121 AAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMP 180

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           +RN  +W+ ++ GYA     EEA + F  M
Sbjct: 181 QRNSFSWSTMVAGYAAEKCSEEAFDLFRLM 210


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 264/458 (57%), Gaps = 3/458 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           SES       +V D +P+ N VS  T+I R  ++ +  EA+ L+S+ML    RP+   F 
Sbjct: 324 SESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFS 383

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +  +LEDL  G ++HA + K+G  +NVFV  +++D+Y K +   +A  +F+     
Sbjct: 384 SVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQK 443

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+V + +++ G     +  +A+ LF++MP RN+ SWN +I GY+Q  +  +A+  F  ML
Sbjct: 444 NIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAML 503

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G VP   T    ++A AN+ +L  GK  HA  +K   +  +F+G +L   YAK G ++
Sbjct: 504 ASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQ 563

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S  +F ++ ERN VTW A+I G A+NG  EE+I  FE M   G+ PN  T L LL+AC+
Sbjct: 564 SSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACS 623

Query: 353 HTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           H GLVE+   YF   K++  G+  K +HY CMVD+L+R+GR  EA+  L   P       
Sbjct: 624 HGGLVEQAIHYFD--KMQALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANS 681

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ALL  C  + N E+ E AA+R+  L  ++ + YV+LSN  +  G+W + + IR  MK 
Sbjct: 682 WAALLSACNTYRNEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKG 741

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
             + +  GCSW++++ + H F + +  H ++ EI  +L
Sbjct: 742 TTLKKDGGCSWVQVRGQYHAFFSWEAKHPLSMEIDEIL 779



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 180/391 (46%), Gaps = 40/391 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +++++ P  +V   T  I  F +   +  A+ +F +ML   +RP+  T   +I +     
Sbjct: 201 ELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAG 260

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           +  L   +   A K    +S++ V ++++ LY+++     A +VF++    +VVS+T ++
Sbjct: 261 EFGLALSIVGLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALL 320

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    + A ++   MP RN VSW  +I  + Q G   EAV L+ +ML +G  PN S
Sbjct: 321 DVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNIS 380

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A A++  L  G   HA ++K     +VFV  SLI  Y KC    D+  +FD L
Sbjct: 381 CFSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTL 440

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMR---------------------------- 333
            ++NIV WN+++ GY+ NG+  EA+  F++M                             
Sbjct: 441 PQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFN 500

Query: 334 ---INGIRPNGVTLLGLLWAC-NHTGLVEKGYSYFSQAKL--EDPGMLKPEHYACMVDLL 387
               +G  P  +T   +L AC N   LV    ++    KL  E+   +       + D+ 
Sbjct: 501 AMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIG----TALSDMY 556

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           ++SG  + +K   Y +P    +  W A++ G
Sbjct: 557 AKSGDLQSSKRMFYQMPERNDVT-WTAMIQG 586



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 133/299 (44%), Gaps = 36/299 (12%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           ++K   I  A R+F+   +  VVSYTTM+  L+KR R  +A++L+++ P  +V  + A I
Sbjct: 159 HVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTATI 218

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA---------AANIAALGMGKSFH 263
            G+ +   +  A+ +F +ML   + PN  T+ C I A         A +I  L +  +F 
Sbjct: 219 SGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNFF 278

Query: 264 ACAVKFLGKL-----------------------DVFVGNSLISFYAKCGSMEDSLLVFDK 300
             +++    L                       DV    +L+  Y++ G ++ +  V D 
Sbjct: 279 ESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDA 338

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN V+W  +I  + Q G   EA++ + +M  +G RPN      +L AC     +  G
Sbjct: 339 MPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGG 398

Query: 361 YSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                 A+    G       +C ++D+  +  +  +A+     LP    I  W +L+ G
Sbjct: 399 ARI--HARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLP-QKNIVCWNSLVSG 454



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 4/203 (1%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VS  S + K      +F ++P  N+ S  TII  +A+   + +A+  F+ ML     P E
Sbjct: 452 VSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGE 511

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF SV+ +   L  L  GK  HA   K+G++ ++F+G+A+ D+Y K   ++ + R+F  
Sbjct: 512 ITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQ 571

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEA 224
               N V++T MI GL +    E+++ LF++M    +     ++ A++   S  G  E+A
Sbjct: 572 MPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQA 631

Query: 225 VNLFIEMLREGLVPNHSTLPCAI 247
           ++ F +M   G+ P      C +
Sbjct: 632 IHYFDKMQALGISPKEKHYTCMV 654


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 167/481 (34%), Positives = 269/481 (55%), Gaps = 4/481 (0%)

Query: 40  ETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           E PA +  +      S   +    VFD +   N     T+I  ++     EEA+ L+  M
Sbjct: 50  EIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM 109

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
           L  ++  + +TF  ++ + +++  L   +Q+HA   K+G  S ++  +++L++Y K   I
Sbjct: 110 LYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDI 169

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
           + A  +F+     + VS+ +MI G  K    E A ++F  MP RN++SW +MI G    G
Sbjct: 170 KSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAG 229

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
           + +EA+NLF  M   G+  ++  L   + A A++  L  GK  HA   K   ++D  +G 
Sbjct: 230 KPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGC 289

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
            LI  YAKCG +E+++ VF K+ E+ +  W A+I GYA +GRG EA+E+F +M+  G+ P
Sbjct: 290 VLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEP 349

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAK 397
           N +T  G+L AC+H GLV +    F    +E     KP  EHY CMVDLL R+G  KEA+
Sbjct: 350 NQMTFTGILTACSHAGLVHEAKLLFE--SMERIHGFKPSIEHYGCMVDLLGRAGLLKEAE 407

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           E + ++P  P    W ALL  C IH N+ELG+   + ++ +DP     Y+ L++  + AG
Sbjct: 408 ELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAG 467

Query: 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +W+  + +RR+MKE+G++++PGCS I +    H F+ GD +H    EI  +L    E++R
Sbjct: 468 EWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLR 527

Query: 518 E 518
           E
Sbjct: 528 E 528


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 187/589 (31%), Positives = 310/589 (52%), Gaps = 91/589 (15%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGS------ESDK 57
           LL  C +   L K  +LHS    YL++             +  D +  GS      +S  
Sbjct: 250 LLAACSAVGDLRKGKQLHS----YLLKA-----------GMSLDYIMEGSLLDLYVKSGD 294

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
                Q+FD     NVV    ++  + +     ++  +F RML   +RP++FT+  ++ +
Sbjct: 295 IEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRT 354

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T   ++ LG+Q+H+   K G QS+++V   ++D+Y K   +++A R+ +     +VVS+
Sbjct: 355 CTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSW 414

Query: 178 TTMICGLLKRERFEDALKLFQEMP------------------------HR---------- 203
           T+MI G ++ E  ++AL+ F+EM                         H+          
Sbjct: 415 TSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYV 474

Query: 204 -----NVVSWNAMIGGYSQTGRNEE-------------------------------AVNL 227
                +V  WN ++  Y++ G ++E                               A+ +
Sbjct: 475 SGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKV 534

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F++M + G   N  T   +I A+AN+A +  GK  HA  +K     +  + N+LIS Y K
Sbjct: 535 FMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGK 594

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CGS+ED+ + F ++T+RN V+WN +I   +Q+GRG EA++ F++M+  G++P+ VT +G+
Sbjct: 595 CGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGV 654

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L AC+H GLVE+G  YF     E     +P+HYAC+VD+L R+G+   AK F+ ++P   
Sbjct: 655 LTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPA 714

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W+ LL  C++H N+E+GEFAA+ +L L+P D +SYV+LSNA +V GKW +   IR+
Sbjct: 715 DSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRK 774

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            MK++G+ + PG SWIE+K+ VH F  GDR H + D+IY  L    +++
Sbjct: 775 IMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRL 823



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 168/361 (46%), Gaps = 33/361 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F    +VF ++   + V+  T+I   A+  H + A+ +F  M L  + P   T  S++ +
Sbjct: 194 FRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAA 253

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            +A+ DL  GKQLH++  K G+  +  +  ++LDLY+K   IEEA               
Sbjct: 254 CSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEA--------------- 298

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                           L++F      NVV WN M+  Y Q     ++ ++F  ML  G+ 
Sbjct: 299 ----------------LQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVR 342

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T PC +    +   +G+G+  H+  +K   + D++V   LI  Y+K G ++ +  +
Sbjct: 343 PNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRI 402

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            D + E+++V+W ++I GY Q+   +EA+E F+ M+  GI P+ + L   + AC     V
Sbjct: 403 LDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAV 462

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            +G    ++  +          +  +V L +R G  KEA      +    GI  W  L+ 
Sbjct: 463 HQGSQIHARVYVSGYSA-DVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGIT-WNGLIS 520

Query: 418 G 418
           G
Sbjct: 521 G 521



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 166/362 (45%), Gaps = 37/362 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+E+   + VS   ++  +A+    EEA+ L+  M    + P+ +   S++ + T  E
Sbjct: 98  RVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTE 157

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
              LG+ +H    K G  S  FVG+A++ LY++  S   A RVF D              
Sbjct: 158 LFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCD-------------- 203

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            M + + V++N +I G++Q G  + A+ +F EM   GL P+  T
Sbjct: 204 -----------------MLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVT 246

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A + +  L  GK  H+  +K    LD  +  SL+  Y K G +E++L +FD   
Sbjct: 247 IASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGD 306

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             N+V WN ++  Y Q     ++ + F RM   G+RPN  T   +L  C HTG +  G  
Sbjct: 307 RTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQ 366

Query: 363 YFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             S   L      + + Y    ++D+ S+ G   +A+  L D+  +  +  W +++ G  
Sbjct: 367 IHS---LTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRIL-DMIEEKDVVSWTSMIAGYV 422

Query: 421 IH 422
            H
Sbjct: 423 QH 424



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 39/291 (13%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++HA A   GL     +G+ ++DLY K   +  A RVFE                     
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFE--------------------- 101

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     E+  R+ VSW A++ GY+Q G  EEAV L+ EM R G+VP    L   + 
Sbjct: 102 ----------ELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILS 151

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A        +G+  H    K     + FVGN+LIS Y +C S   +  VF  +   + VT
Sbjct: 152 ACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVT 211

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
           +N +I G+AQ G G+ A+  F+ M+++G+ P+ VT+  LL AC+  G + KG   +SY  
Sbjct: 212 FNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLL 271

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +A +    +++      ++DL  +SG  +EA + ++D      +  W  +L
Sbjct: 272 KAGMSLDYIME----GSLLDLYVKSGDIEEALQ-IFDSGDRTNVVLWNLML 317



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 122/284 (42%), Gaps = 16/284 (5%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  R   S+N  + G+      E+ + LF    R+ +V       CA+ A       G G
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACR-----GSG 55

Query: 260 KSF------HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           + +      HA A+         +GN LI  YAK G +  +  VF++L+ R+ V+W AV+
Sbjct: 56  RRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVL 115

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            GYAQNG GEEA+  +  M  +G+ P    L  +L AC  T L + G       ++   G
Sbjct: 116 SGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLG--RLIHVQVYKQG 173

Query: 374 MLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI-HSNVELGEFA 431
                     ++ L  R   F+ A     D+ +   + F   + G  Q  H +  LG F 
Sbjct: 174 FFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFD 233

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
             ++  L P+ V+   +L+ A S  G       +   + + GM+
Sbjct: 234 EMQLSGLSPDSVTIASLLA-ACSAVGDLRKGKQLHSYLLKAGMS 276


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 173/456 (37%), Positives = 263/456 (57%), Gaps = 41/456 (8%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +S  ++FDE+P  +VVS   +I  +A+  + +EA+ LF  M+  N+RP E T  SV+ +
Sbjct: 185 IASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSA 244

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                 + LG+Q+H+W    G  SN+ + +A++DLYIK   +E A               
Sbjct: 245 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETA--------------- 289

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               CGL            F+ + +++V+SWN +IGGY+     +EA+ LF EMLR G  
Sbjct: 290 ----CGL------------FEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES 333

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN------SLISFYAKCGSM 291
           PN  T+   + A A++ A+ +G+  H     ++ K    V N      SLI  YAKCG +
Sbjct: 334 PNDVTMLSILPACAHLGAIEIGRWIHV----YINKRLKGVANASSHRTSLIDMYAKCGDI 389

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           E +  VFD +  R++ +WNA+I G+A +GR   A + F RMR N I P+ +T +GLL AC
Sbjct: 390 EAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSAC 449

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H+G+++ G   F   K +     K EHY CM+DLL  SG FKEA+E +  +  +P    
Sbjct: 450 SHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVI 509

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W +LL  C++++NVELGE  A+ ++ ++P++  SYV+LSN  + AG+W+ V+ IR  + +
Sbjct: 510 WCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLND 569

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           KGM +VPGCS IEI S VH F+ GD+ H  N EIY 
Sbjct: 570 KGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 227/411 (55%), Gaps = 5/411 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ + + N++   T+    A       A+YL+  M+ L + P+ +TF  ++ S    + 
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKA 118

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+H    K+G   +++V ++++ +Y++   +E+A +VF+ + + +VVSYT +I G
Sbjct: 119 FREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITG 178

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              +     A K+F E+P ++VVSWNAMI GY++TG N+EA+ LF EM++  + P+ ST+
Sbjct: 179 YASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 238

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A  A++ +G+  H+         ++ + N+LI  Y KCG +E +  +F+ L+ 
Sbjct: 239 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY 298

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H G +E G   
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWI 358

Query: 364 FSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                    G+     H   ++D+ ++ G  + A++ ++D   +  +  W A++ G  +H
Sbjct: 359 HVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQ-VFDSILNRSLSSWNAMIFGFAMH 417

Query: 423 --SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
             +N     F+  R   ++P+D+ ++V L +A S +G  D   +I R MKE
Sbjct: 418 GRANAAFDIFSRMRKNEIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMKE 467



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 39/260 (15%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+ +   N++ WN M  G++ +     A+ L++ M+  GL+PN  T P  + + A 
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 115

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------- 304
             A   G+  H   +K    LD++V  SLIS Y + G +ED+  VFD+ + R        
Sbjct: 116 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTAL 175

Query: 305 -----------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                  ++V+WNA+I GYA+ G  +EA+E F+ M    +RP+ 
Sbjct: 176 ITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDE 235

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM---LKPEHYACMVDLLSRSGRFKEAKE 398
            T++ ++ AC  +  +E G    S   ++D G    LK  +   ++DL  + G  + A  
Sbjct: 236 STMVSVVSACAQSASIELGRQVHSW--IDDHGFGSNLKIVN--ALIDLYIKCGEVETACG 291

Query: 399 FLYDLPFDPGIGFWKALLGG 418
               L +   I  W  L+GG
Sbjct: 292 LFEGLSYKDVIS-WNTLIGG 310


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 166/500 (33%), Positives = 278/500 (55%), Gaps = 41/500 (8%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++  +VFDE+P+ NV+    +I  +     Y E I +F  M   +++P  +TF  V+ + 
Sbjct: 92  ATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKAC 151

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           +   ++ +GK++H  ATKVGL S +FVG+ ++ +Y K   + EA  V ++    +VVS+ 
Sbjct: 152 SCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWN 211

Query: 179 TMICGLLKRERFEDALKLFQEMP------------------------------------- 201
           +++ G  + +RF+DAL++ +EM                                      
Sbjct: 212 SLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG 271

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            +++VSWN MIG Y +     EAV L+  M  +G  P+  ++   + A  + +AL +GK 
Sbjct: 272 KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKK 331

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            H    +     ++ + N+LI  YAKCG ++ +  VF+ +  R++V+W A+I  Y  +GR
Sbjct: 332 IHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGR 391

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EH 379
           G +A+  F +M+ +G+ P+ +  +  L AC+H GL+E+G S F    + D   + P  EH
Sbjct: 392 GCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKL--MTDHYKITPRLEH 449

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
            ACMVDLL R+G+ KEA +F+ ++P +P    W ALLG C++HSN ++G  AA ++  L 
Sbjct: 450 LACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLA 509

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           PE    YV+LSN  + AG+W+ V+NIR  MK KG+ + PG S +E+   +H F+ GDR+H
Sbjct: 510 PEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSH 569

Query: 500 HMNDEIYAVLRSCTEQIREF 519
             + EIY  L    ++++E 
Sbjct: 570 PQSAEIYRELDVLVKKMKEL 589



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 1/216 (0%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEA-TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           +   F+   +LD Y  L ++    +R+  +    N      ++      +    A K+F 
Sbjct: 40  KETAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFD 99

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           E+P RNV+  N MI  Y   G   E + +F  M    + P+H T PC + A +    + +
Sbjct: 100 EIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVI 159

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GK  H  A K      +FVGN L+S Y KCG + ++ LV D+++ R++V+WN+++ GYAQ
Sbjct: 160 GKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQ 219

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           N R ++A+E    M    I  +  T+  LL A ++T
Sbjct: 220 NQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 255



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +G  L+  YA    +  +  VFD++ ERN++  N +I  Y  NG   E I+ F  M    
Sbjct: 77  LGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCH 136

Query: 337 IRPNGVTLLGLLWACNHTG 355
           ++P+  T   +L AC+ +G
Sbjct: 137 VKPDHYTFPCVLKACSCSG 155


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 271/451 (60%), Gaps = 4/451 (0%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N+VS   I+  F +  +++EA+ +F +M  L   P + T  SV+PS    E+LN+G+Q+H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            +  K GL  +  V SA+LD+Y K   +    ++F++            I GL +    +
Sbjct: 276 GYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVD 335

Query: 192 DALKLF----QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
            AL++F    ++    NVVSW ++I G +Q G++ EA+ LF EM   G+ PN  T+P  +
Sbjct: 336 KALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSML 395

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A  NIAALG G+S H  AV+     DV VG++LI  YAKCG ++ S +VF+ +  +N+V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLV 455

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
            WN+++ GY+ +G+ +E +  FE +    ++P+ ++   LL AC   GL ++G+ YF+  
Sbjct: 456 CWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMM 515

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
             E     + EHY+CMV+LL R+G+ +EA + + ++PF+P    W ALL  C++ +NV+L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            E AA+++  L+PE+  +YV++SN  +  G W  V +IR +M+  G+ + PGCSWI++K+
Sbjct: 576 AEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKN 635

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           KV+  +  D++H   D+I   +   +E++R+
Sbjct: 636 KVYTLLACDKSHPQIDQITEKMDEISEEMRK 666



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/468 (23%), Positives = 215/468 (45%), Gaps = 50/468 (10%)

Query: 30  ETQKASVQKLETPA-----IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFA 84
           +T +A  + L++ A     I    ++  S  + F+    +   +PD  V S +++I    
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALT 92

Query: 85  KQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF 144
           K   + ++I +FSRM    + P      ++      L     GKQ+H  A   GL  + F
Sbjct: 93  KAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAF 152

Query: 145 VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR- 203
           V  ++  +Y++   + +A +VF+     +VV+ + ++CG  ++   E+ +++  EM    
Sbjct: 153 VQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSG 212

Query: 204 ---NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
              N+VSWN ++ G++++G ++EAV +F +M   G  P+  T+   + +  +   L MG+
Sbjct: 213 IEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGR 272

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL------------------- 301
             H   +K     D  V ++++  Y K G +   + +FD+                    
Sbjct: 273 QIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNG 332

Query: 302 ----------------TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
                            E N+V+W ++I G AQNG+  EA+E F  M++ G++PN VT+ 
Sbjct: 333 LVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIP 392

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLP 404
            +L AC +   +  G S    A      +L   H  + ++D+ ++ GR K + + ++++ 
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVH--LLDDVHVGSALIDMYAKCGRIKMS-QIVFNMM 449

Query: 405 FDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
               +  W +L+ G  +H   +  +  F +     L P+ +S   +LS
Sbjct: 450 PTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLS 497



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 124/261 (47%), Gaps = 34/261 (13%)

Query: 56  DKFSSVHQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           DK   +  +F E   +LNVVS T+II   A+     EA+ LF  M +  ++P+  T  S+
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P+   +  L  G+  H +A +V L  +V VGSA++D+Y K                   
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAK------------------- 435

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                  CG +K  +      +F  MP +N+V WN+++ GYS  G+ +E +++F  ++R 
Sbjct: 436 -------CGRIKMSQI-----VFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRT 483

Query: 235 GLVPNHSTLPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            L P+  +    + A   +     G K F+  + ++  K  +   + +++   + G +++
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 294 SLLVFDKLT-ERNIVTWNAVI 313
           +  +  ++  E +   W A++
Sbjct: 544 AYDLIKEIPFEPDSCVWGALL 564


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 168/451 (37%), Positives = 264/451 (58%), Gaps = 4/451 (0%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N+VS   ++  F     Y+EA+ +F  ML+    P   T   V+P+   LED+ +G Q+H
Sbjct: 204 NLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVH 263

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            +  K GL S+ FV SA+LD+Y K   ++E +RVF++     + S    + GL +    +
Sbjct: 264 GYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVD 323

Query: 192 DALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
            AL++F +   +    NVV+W ++I   SQ G++ EA+ LF +M   G+ PN  T+P  I
Sbjct: 324 TALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLI 383

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A  NI+AL  GK  H  +++     DV+VG++LI  YAKCG ++ +   FDK++  N+V
Sbjct: 384 PACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLV 443

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WNAV+ GYA +G+ +E +E F  M  +G +P+ VT   +L AC   GL E+G+  ++  
Sbjct: 444 SWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSM 503

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
             E     K EHYAC+V LLSR G+ +EA   + ++PF+P    W ALL  C++H+N+ L
Sbjct: 504 SEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSL 563

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
           GE AA ++  L+P +  +Y++LSN  +  G WD  + IR  MK KG+ + PG SWIE+  
Sbjct: 564 GEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGH 623

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           KVH+ + GD++H    +I   L     Q+++
Sbjct: 624 KVHMLLAGDQSHPQMKDILEKLDKLNMQMKK 654



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 214/463 (46%), Gaps = 53/463 (11%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C+  S+ SL++  + H+L     + +       L +      S+S    S   SS     
Sbjct: 8   CLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSS----- 62

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
             +P   + S +++I  FA+ HH+   +  FS +  L + P  F   S I S  +L  L+
Sbjct: 63  -HLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALD 121

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
            G+QLHA+A   G  ++  V S++  +Y+K   I +A ++F+   + +VV ++ MI G  
Sbjct: 122 PGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYS 181

Query: 186 KRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           +    E+A +LF EM       N+VSWN M+ G+   G  +EAV +F  ML +G  P+ S
Sbjct: 182 RLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGS 241

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+ C + A   +  + +G   H   +K     D FV ++++  Y KCG +++   VFD++
Sbjct: 242 TVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEV 301

Query: 302 TER-----------------------------------NIVTWNAVICGYAQNGRGEEAI 326
            E                                    N+VTW ++I   +QNG+  EA+
Sbjct: 302 EEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEAL 361

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY--FSQAKLEDPGMLKPEHY-ACM 383
           E F  M+  G+ PN VT+  L+ AC +   +  G     FS  +    G+    +  + +
Sbjct: 362 ELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRR----GIFDDVYVGSAL 417

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           +D+ ++ GR + A+   +D      +  W A++ G  +H   +
Sbjct: 418 IDMYAKCGRIQLARR-CFDKMSALNLVSWNAVMKGYAMHGKAK 459



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 31/187 (16%)

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           D+  +LNVV+ T+II   ++     EA+ LF  M    + P+  T  S+IP+   +  L 
Sbjct: 334 DQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALM 393

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
            GK++H ++ + G+  +V+VGSA++D+Y K   I+ A R F+     N+V          
Sbjct: 394 HGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLV---------- 443

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                                SWNA++ GY+  G+ +E + +F  ML+ G  P+  T  C
Sbjct: 444 ---------------------SWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTC 482

Query: 246 AIIAAAN 252
            + A A 
Sbjct: 483 VLSACAQ 489


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 169/458 (36%), Positives = 262/458 (57%), Gaps = 3/458 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           SES       +V D +P+ N VS  T+I R  ++ +  EA+ L+S+ML    RP+   F 
Sbjct: 326 SESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFS 385

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +   LEDL  G ++HA + K+G  +NVFV S+++D+Y K     +A  +F+     
Sbjct: 386 SVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEK 445

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+V + ++  G     +  +A+ LF++MP RN+ SWN +I GY+Q  +  +A+  F  ML
Sbjct: 446 NIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAML 505

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G VP   T    ++A AN+ +L  GK  HA  +K   +  +F+G +L   YAK G ++
Sbjct: 506 ASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQ 565

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S  +F ++ ERN VTW A+I G A+NG  EE+I   E M   G+ PN  T L LL+AC+
Sbjct: 566 SSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACS 625

Query: 353 HTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           H GLVE+   YF   K++  G+  K +HY CMVD+L+R+GR  EA+  L   P       
Sbjct: 626 HGGLVEQAIHYFE--KMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANS 683

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ALL  C  + N E+GE AA+R+  L  ++ + YV+LSN  +  G+W + + IR  MK 
Sbjct: 684 WAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKG 743

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
             + +  GCSW++++ + H F + +  H ++ EI  +L
Sbjct: 744 TTLKKDGGCSWVQVRGQYHAFFSWEAKHPLSMEINEIL 781



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 182/390 (46%), Gaps = 38/390 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +++++ P  +V   T  I  F +   +  A+ +F +M+   +RP+  TF  +I +     
Sbjct: 203 ELYEQCPSGSVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAG 262

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           +  L   +   A K    +S++ V ++++ LY+++     A +VF++    +VVS+T ++
Sbjct: 263 EFGLAMSIVGSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALL 322

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    + A ++   MP RN VSW  +I  + Q G   EAV L+ +ML +G  PN S
Sbjct: 323 DVYSESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNIS 382

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A A +  L  G   HA ++K     +VFV +SLI  Y KC    D+  +FD L
Sbjct: 383 CFSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTL 442

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMR--------------------INGIR--- 338
            E+NIV WN++  GY+ NG+  EA+  F++M                     ++ +R   
Sbjct: 443 PEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFN 502

Query: 339 --------PNGVTLLGLLWAC-NHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLS 388
                   P  +T   +L AC N   LV    ++    KL   GM +       + D+ +
Sbjct: 503 AMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKL---GMEESIFIGTALSDMYA 559

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +SG  + +K   Y +P    +  W A++ G
Sbjct: 560 KSGDLQSSKRMFYQMPERNDVT-WTAMIQG 588



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 146/363 (40%), Gaps = 68/363 (18%)

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED-----THNP---- 172
           E L L   LHA A + G+ ++  V S +L  Y   +   E  R F D       +P    
Sbjct: 96  ERLPLALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYD 155

Query: 173 -------------------------NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
                                    NVVSYTTM+  L+KR R  +A++L+++ P  +V  
Sbjct: 156 FMVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAF 215

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           + A I G+ +   +  A+ +F +M+  G+ PN  T  C I A       G+  S    A+
Sbjct: 216 FTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAI 275

Query: 268 KF--------------------------------LGKLDVFVGNSLISFYAKCGSMEDSL 295
           K                                 +   DV    +L+  Y++ G ++ + 
Sbjct: 276 KSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGAR 335

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            V D + ERN V+W  +I  + Q G   EA++ + +M  +G RPN      +L AC    
Sbjct: 336 RVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLE 395

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            +  G    +++ L+          + ++D+  +  + ++A+     LP +  I  W +L
Sbjct: 396 DLRGGARIHARS-LKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP-EKNIVCWNSL 453

Query: 416 LGG 418
             G
Sbjct: 454 ASG 456



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 41/251 (16%)

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           A++L    +R G+  + S     +   A  A A    ++F  C     G    F  + ++
Sbjct: 101 ALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAA--GAASPFTYDFMV 158

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE------------ 330
             + K G +  +  +FD + ERN+V++  ++    + GR  EA+E +E            
Sbjct: 159 HEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTA 218

Query: 331 -------------------RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
                              +M   G+RPNG+T + ++ AC   G      S    A   +
Sbjct: 219 TISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSN 278

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF- 430
                 E    ++ L  R G    A++   ++     +  W ALL    ++S  E G+  
Sbjct: 279 FFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVS-WTALL---DVYS--ESGDLD 332

Query: 431 AARRILALDPE 441
            ARR+L   PE
Sbjct: 333 GARRVLDAMPE 343


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 173/457 (37%), Positives = 257/457 (56%), Gaps = 33/457 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           + S    S  ++FDE+P  +VVS   +I  +A+   Y+EA+ LF  M+  N+RP E T  
Sbjct: 143 ASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMV 202

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ +      + LG+Q+H+W    G  SN+ + +A++DLY K   +E A          
Sbjct: 203 TVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETA---------- 252

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CGL            F+ +  ++VVSWN +IGGY+     +EA+ LF EML
Sbjct: 253 ---------CGL------------FEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEML 291

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGS 290
           R G  PN  T+   + A A++ A+ +G+  H    K L  +     +  SLI  YAKCG 
Sbjct: 292 RSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGD 351

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E +  VF+ +  +++ +WNA+I G+A +GR     + F RMR NGI P+ +T +GLL A
Sbjct: 352 IEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSA 411

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H+G ++ G   F     +     K EHY CM+DLL  SG FKEAKE +  +P +P   
Sbjct: 412 CSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGV 471

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W +LL  C+ H N+EL E  AR ++ ++PE+  SYV+LSN  + AG+WD V+ +R  + 
Sbjct: 472 IWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLN 531

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
            KGM +VPGCS IEI S+VH F+ GD+ H  N EIY 
Sbjct: 532 GKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYG 568



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 225/420 (53%), Gaps = 7/420 (1%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D F     VF  + + N +   T++  +A       A+ L+  M+ L + P+ +TF  ++
Sbjct: 14  DGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLL 73

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            S    +    G+Q+H    K+G + +++V ++++ +Y +   +E+A +VF+ + + +VV
Sbjct: 74  KSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVV 133

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           SYT +I G         A ++F E+P ++VVSWNAMI GY++TG  +EA+ LF EM++  
Sbjct: 134 SYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTN 193

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+  T+   + A A   ++ +G+  H+         ++ + N+LI  Y+KCG +E + 
Sbjct: 194 VRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETAC 253

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +F+ L+ +++V+WN +I GY      +EA+  F+ M  +G  PN VT++ +L AC H G
Sbjct: 254 GLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLG 313

Query: 356 LVEKG--YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            ++ G     +   KL+D     P     ++D+ ++ G   EA   +++      +  W 
Sbjct: 314 AIDIGRWIHVYIDKKLKDVTN-APSLRTSLIDMYAKCGDI-EAAHQVFNSMLHKSLSSWN 371

Query: 414 ALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           A++ G  +H  +N     F+  R   ++P+D+ ++V L +A S +GK D   +I + M +
Sbjct: 372 AMIFGFAMHGRANAGFDLFSRMRKNGIEPDDI-TFVGLLSACSHSGKLDLGRHIFKSMTQ 430



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%)

Query: 41  TPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
            P++RT  +   ++     + HQVF+ +   ++ S   +I  FA          LFSRM 
Sbjct: 335 APSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMR 394

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
              I P + TF  ++ + +    L+LG+ +
Sbjct: 395 KNGIEPDDITFVGLLSACSHSGKLDLGRHI 424


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 182/519 (35%), Positives = 286/519 (55%), Gaps = 53/519 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-LLLNIRPSEFTF 111
           S+  +     ++FDE+ + +V++ TT+I  + K    EEA  LF R+    N+       
Sbjct: 78  SKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMV 137

Query: 112 GSVIPSSTALEDLNL-----GKQLHAWATKV-GLQSNVFVGSA----------------- 148
           G  I S+   +   L      K + +W T + G   N  + SA                 
Sbjct: 138 GGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNT 197

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR-----ERFED----------- 192
           ++ +  +   IEEA R+F+     +V+S+T MI GLL       ER  +           
Sbjct: 198 VMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMIT 257

Query: 193 ----------ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHS 241
                     A KLF EMP +NV+SW  MI G  Q G +EEA+ +F  ML   G  PN  
Sbjct: 258 GLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQG 317

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK- 300
           T    + A +N+A LG G+  H    K + +   FV ++LI+ Y+KCG +  +  +FD  
Sbjct: 318 TFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDG 377

Query: 301 -LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
             ++R++V+WN +I  YA +G G+EAI FF+ MR +G +P+ VT +GLL AC+H GLVE+
Sbjct: 378 MTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEE 437

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G  YF +   +   +++ +HYAC+VDL  R+GR KEA  F+  L   P    W ALL GC
Sbjct: 438 GLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGC 497

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
            +H+NV++G+ AA+++L ++PE+  +Y++LSN  +  GKW   + +R +MK+KG+ + PG
Sbjct: 498 NVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPG 557

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           CSWIE+ ++VHVFV GD++H  +  IY++LR    ++++
Sbjct: 558 CSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMKK 596



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 22/251 (8%)

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           T + NV     MI  L K  R  +A +LF EM   +V++W  +I GY + G  EEA  LF
Sbjct: 62  TVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLF 121

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             +  +  V   + +    I +  I+     K F+    K     +V   N++I  YA+ 
Sbjct: 122 DRVDAKKNVVTWTAMVGGYIRSNKIS--DAEKLFNEMPNK-----NVVSWNTMIDGYAQN 174

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G ++ ++ +F+K+ ERN+V+WN V+   AQ GR EEA   F+RM    +         + 
Sbjct: 175 GRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDV---------IS 225

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           W     GL+++    F +    D        +  M+  L ++G  + A++   ++P    
Sbjct: 226 WTAMIAGLLDEALDLFERMPERD-----LPSWNTMITGLIQNGDLRRARKLFNEMPKKNV 280

Query: 409 IGFWKALLGGC 419
           I  W  ++ GC
Sbjct: 281 IS-WTTMITGC 290


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 170/451 (37%), Positives = 259/451 (57%), Gaps = 5/451 (1%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             +V D +P  N VS  T+I R  ++    EA+ L+S+ML    RP+   F SV+ +   
Sbjct: 332 ARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACAT 391

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L+DL  G ++HA A K+G  +N+FV S+++D+Y K      A RVF      N V + ++
Sbjct: 392 LQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSL 451

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G     +  +A  LF +MP RN VSWN MI GY++  R  +A+N F  ML  G +P  
Sbjct: 452 ISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGE 511

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL   ++A AN+ +L MG+  HA  VK   + ++F+G +L   YAK G ++ S  VF +
Sbjct: 512 ITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQ 571

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + E+N +TW A++ G A+NG  EE+I  FE M  NGI PN  T L +L+AC+H GLVE+ 
Sbjct: 572 MPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQA 631

Query: 361 YSYFS--QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             YF   QA    P   K +HY CMVD+L+R+G   EA+E L  +  +     W +LL  
Sbjct: 632 IHYFETMQAHGIPP---KSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSA 688

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C  + N E+GE AA+++  L+ ++ + YV+LSN  +  GKW + +  R  M+   + +  
Sbjct: 689 CSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDA 748

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           GCSW++++ + H F +    H ++ EIY +L
Sbjct: 749 GCSWLQLRGQYHAFFSWKEKHPLSLEIYEIL 779



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 180/391 (46%), Gaps = 40/391 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++++  P  +V   T +I  F +   +++A  +F +ML  ++RP+  T   VI +     
Sbjct: 201 ELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAG 260

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + +L   +   A K  L + ++ V ++++ LY+++     A RVF+D    +VVS+T ++
Sbjct: 261 EFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALL 320

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                    + A ++   MP RN VSW  +I  + Q G   EA+ L+ +ML +G  PN S
Sbjct: 321 DVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNIS 380

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A A +  L  G   HA A+K     ++FV +SLI  Y KC     +  VF+ L
Sbjct: 381 CFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSL 440

Query: 302 TERNIVTWNAVICGYAQNG-------------------------------RGEEAIEFFE 330
            E+N V WN++I GY+ NG                               R  +A+ +F 
Sbjct: 441 PEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFY 500

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLL 387
            M  +G  P  +TL  +L AC +   +E G   ++   +  +ED   +       + D+ 
Sbjct: 501 AMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMG----TALCDMY 556

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           ++SG    ++   Y +P    I  W A++ G
Sbjct: 557 AKSGDLDSSRRVFYQMPEKNNIT-WTAMVQG 586



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 125/308 (40%), Gaps = 69/308 (22%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLY---------------- 153
           T  S  PSS  L    L   LHA A + GL ++  V S +L  Y                
Sbjct: 85  TMPSYAPSSGCLP---LVLSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDC 141

Query: 154 ------------------IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALK 195
                             +K   I  A R+F      +VVSYTTM+  L+KR    DA++
Sbjct: 142 VAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVE 201

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
           L++  P  +V  + AMI G+ +   +++A  +F +ML   + PN  TL C I A      
Sbjct: 202 LYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGE 261

Query: 256 LGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
             +       AVK  L +  + V NSLI+ Y + G    +  VFD +  R++V+W A++ 
Sbjct: 262 FDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLD 321

Query: 315 GYA-------------------------------QNGRGEEAIEFFERMRINGIRPNGVT 343
            YA                               Q G   EA++ + +M  +G RPN   
Sbjct: 322 VYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISC 381

Query: 344 LLGLLWAC 351
              +L AC
Sbjct: 382 FSSVLSAC 389



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K      +F+++P  N VS  T+I  +A+   + +A+  F  ML     P E T  SV+ 
Sbjct: 460 KMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLL 519

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L +G+ +HA   K+G++ N+F+G+A+ D+Y K   ++ + RVF      N ++
Sbjct: 520 ACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNIT 579

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEAVNLFIEML 232
           +T M+ GL +    E+++ LF++M    +     ++ A++   S  G  E+A++ F  M 
Sbjct: 580 WTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQ 639

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
             G+ P      C +   A    L   +      +K   +LD    +SL+S
Sbjct: 640 AHGIPPKSKHYTCMVDVLARAGCLPEAEEL---LMKVSSELDTSSWSSLLS 687



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
            +++    K GS+ D++ ++++    ++  + A+I G+ +N   ++A   F +M    +R
Sbjct: 184 TTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVR 243

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           PN VTL+ ++ AC   G  +        A   +      E +  ++ L  R G    A+ 
Sbjct: 244 PNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARR 303

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEF-AARRILALDP 440
              D+     +  W ALL    +++  +LG+   ARR+L   P
Sbjct: 304 VFDDMEVRDVVS-WTALL---DVYA--DLGDLDGARRVLDAMP 340


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 162/466 (34%), Positives = 267/466 (57%), Gaps = 34/466 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D+      +FDE+P+L+ VS   +I  +++   YE +++ F  M  +      F F 
Sbjct: 296 SKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFA 355

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  +  L  L +G+QLH  A      S + VG++++D+Y K                 
Sbjct: 356 TMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKC---------------- 399

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                          E FE+A  +F+ +P R  VSW A+I GY Q G +   + LF +M 
Sbjct: 400 ---------------EMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMR 444

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              L  + ST    + A+A+ A+L +GK  HA  ++     +VF G+ L+  YAKCGS++
Sbjct: 445 GSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 504

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D++ VF+++ +RN V+WNA+I  +A NG GE AI  F +M  +G++P+ V++LG+L AC+
Sbjct: 505 DAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACS 564

Query: 353 HTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           H G VE+G  YF QA     G+  K +HYACM+DLL R+GRF EA++ + ++PF+P    
Sbjct: 565 HCGFVEQGTEYF-QAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIM 623

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
           W ++L  C+IH N  L E AA ++ +++   D ++YV +SN  + AG+W+ V ++++ M+
Sbjct: 624 WSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMR 683

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           E+G+ +VP  SW+E+  K+HVF + D+ H   DEI   +   T +I
Sbjct: 684 ERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEI 729



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 180/384 (46%), Gaps = 37/384 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+E+P+ + V+  T+I  + K   Y E+I+LF +M     +PS+FTF  V+ +   L D
Sbjct: 206 LFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHD 265

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             LG+QLHA +   G   +  VG+ ILD Y K   + E   +F++    + VSY  +I  
Sbjct: 266 FALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISS 325

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             + +++E +L  F+EM             G+ +  RN      F  ML           
Sbjct: 326 YSQADQYEASLHFFREM----------QCMGFDR--RNFP----FATMLS---------- 359

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                 AAN+++L MG+  H  A+       + VGNSL+  YAKC   E++ L+F  L +
Sbjct: 360 -----IAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQ 414

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R  V+W A+I GY Q G     ++ F +MR + +R +  T   +L A      +  G   
Sbjct: 415 RTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQL 474

Query: 364 FSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              A +   G L+       +VD+ ++ G  K+A +   ++P D     W AL+     +
Sbjct: 475 --HAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAHADN 531

Query: 423 SNVE--LGEFAARRILALDPEDVS 444
            + E  +G FA      L P+ VS
Sbjct: 532 GDGEAAIGAFAKMIESGLQPDSVS 555



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 169/365 (46%), Gaps = 39/365 (10%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIP 116
           SS   +FD +PD  VV+ T ++G +A+  H++EA  LF +M   +    P   TF +++P
Sbjct: 96  SSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLP 155

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVF--VGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
                   N   Q+HA+A K+G  +N F  V + +L  Y ++                  
Sbjct: 156 GCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV------------------ 197

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                         R + A  LF+E+P ++ V++N +I GY + G   E+++LF++M + 
Sbjct: 198 -------------RRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQS 244

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G  P+  T    + A   +    +G+  HA +V      D  VGN ++ FY+K   + ++
Sbjct: 245 GHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLET 304

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
            ++FD++ E + V++N VI  Y+Q  + E ++ FF  M+  G          +L    + 
Sbjct: 305 RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANL 364

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
             ++ G     QA L     +   H    +VD+ ++   F+EA+     LP    +  W 
Sbjct: 365 SSLQMGRQLHCQALLATADSIL--HVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS-WT 421

Query: 414 ALLGG 418
           AL+ G
Sbjct: 422 ALISG 426



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +++ A   K G  ++    + I++  ++   +  A +V+++  + N VS  TMI G +K 
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG--LVPNHSTLPC 245
                A  LF  MP R VV+W  ++G Y++    +EA  LF +M R     +P+H T   
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVF--VGNSLISFYAKCGSMEDSLLVFDKLTE 303
            +    +          HA AVK     + F  V N L+  Y +   ++ + ++F+++ E
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++ VT+N +I GY ++G   E+I  F +MR +G +P+  T  G+L A
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 296/546 (54%), Gaps = 50/546 (9%)

Query: 9   RSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH---QVF 65
           +SS SL+ L ++H++A               +   +    V C + +  FS+++   +VF
Sbjct: 38  KSSTSLHHLKQVHAVA---------LRTGHFQDHYVSGTLVKCYA-NPHFSNLNFALKVF 87

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           + VP+ NV     II    + +   +AI  + +M++ + RP++FT+ ++  + TA E   
Sbjct: 88  EYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAE 147

Query: 126 LGKQLHAWATKVGLQSNVFVGSA-------------------------------ILDLYI 154
            G Q+HA   K GL  +V + SA                               ++D Y+
Sbjct: 148 EGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYL 207

Query: 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
           K   +E A  +F    + NV S+  M+ G+ K    E+A +LF EM  +N +SW+AMI G
Sbjct: 208 KCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDG 267

Query: 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
           Y + G  +EA+ +F  M RE + P    L   + A AN+ AL  G+  HA         D
Sbjct: 268 YIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFD 327

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
             +G +L+  YAKCG ++ +  VF+K+ ++ + TWNA+ICG   +GR E+AIE F +M+ 
Sbjct: 328 AVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQK 387

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSG 391
              RPNG+TLLG+L AC H+G+V++G   F+  +     +PGM   EHY C+VDLL R+G
Sbjct: 388 QKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGM---EHYGCVVDLLGRAG 444

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451
              EA+E +Y +P +P    W ALLG C+ H +VELGE   + +L L+P++   Y +LSN
Sbjct: 445 LLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSN 504

Query: 452 ALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
             + AG+WD+V+N+R+ MKE+G+    G S I+    VH F  GD +H     IY +L++
Sbjct: 505 IYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKN 564

Query: 512 CTEQIR 517
             ++++
Sbjct: 565 MIKRLK 570


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  324 bits (830), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 184/519 (35%), Positives = 289/519 (55%), Gaps = 42/519 (8%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + +L  C S  +L K  ++H+    +++E++  S  ++ T A+    + CG+    F   
Sbjct: 234 MNVLSACGSLAALEKGKQIHA----HIVESEYHSDVRVST-ALTKMYMKCGA----FKDA 284

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VF+ +   +V++  T+I  F      EEA   F RML   + P   T+ +V+ +    
Sbjct: 285 REVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARP 344

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  GK++HA A K GL S+V  G+A++++Y K  S+++A +VF+              
Sbjct: 345 GGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFD-------------- 390

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                             MP R+VVSW  ++G Y+   +  E+   F +ML++G+  N  
Sbjct: 391 -----------------RMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKI 433

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T  C + A +N  AL  GK  HA  VK     D+ V N+L+S Y KCGS+ED++ VF+ +
Sbjct: 434 TYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGM 493

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           + R++VTWN +I G  QNGRG EA++ +E M+  G+RPN  T + +L AC    LVE+G 
Sbjct: 494 SMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGR 553

Query: 362 SYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             F+    +D G++  E HYACMVD+L+R+G  +EA++ +  +P  P    W ALL  C+
Sbjct: 554 RQFAFMS-KDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACR 612

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH NVE+GE AA   L L+P++   YV LS   + AG W +V+ +R+ MKE+G+ + PG 
Sbjct: 613 IHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGR 672

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           SWIEI  +VH FV  D++H    EIYA L +  +Q++  
Sbjct: 673 SWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSL 711



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 184/368 (50%), Gaps = 39/368 (10%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS     +   Q+FD+  + +VVS   +I  +A +   +EA  LF+ M    + P +FT
Sbjct: 76  CGS----VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFT 131

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F S++ + ++   LN G+++H    + GL ++  VG+A++ +Y K  S+ +A RVF+   
Sbjct: 132 FVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFD--- 188

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        M  R+ VSW  + G Y+++G  EE++  +  
Sbjct: 189 ----------------------------AMASRDEVSWTTLTGAYAESGYGEESLKTYHA 220

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           ML+E + P+  T    + A  ++AAL  GK  HA  V+     DV V  +L   Y KCG+
Sbjct: 221 MLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGA 280

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            +D+  VF+ L+ R+++ WN +I G+  +G+ EEA   F RM   G+ P+  T   +L A
Sbjct: 281 FKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSA 340

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C   G + +G    ++A  +  G++    +   ++++ S++G  K+A++    +P    +
Sbjct: 341 CARPGGLARGKEIHARAAKD--GLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVV 398

Query: 410 GFWKALLG 417
             W  LLG
Sbjct: 399 S-WTTLLG 405



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 169/357 (47%), Gaps = 48/357 (13%)

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           + +  ++ S    +DL +GKQ+H    + G++ NV++ + +L LY    S+ EA      
Sbjct: 29  YDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEAR----- 83

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                     +LF +  +++VVSWN MI GY+  G  +EA NLF
Sbjct: 84  --------------------------QLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLF 117

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             M +E L P+  T    + A ++ A L  G+  H   ++     D  VGN+LIS YAKC
Sbjct: 118 TLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKC 177

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS+ D+  VFD +  R+ V+W  +   YA++G GEE+++ +  M    +RP+ +T + +L
Sbjct: 178 GSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVL 237

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA------CMVDLLSRSGRFKEAKEFLYD 402
            AC     +EKG    +        +++ E+++       +  +  + G FK+A+E    
Sbjct: 238 SACGSLAALEKGKQIHAH-------IVESEYHSDVRVSTALTKMYMKCGAFKDAREVFEC 290

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDVSSYVMLSNALSVAG 457
           L +   I  W  ++ G      +E       R+L   + P D ++Y  + +A +  G
Sbjct: 291 LSYRDVIA-WNTMIRGFVDSGQLEEAHGTFHRMLEEGVAP-DRATYTTVLSACARPG 345


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  324 bits (830), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 170/450 (37%), Positives = 258/450 (57%), Gaps = 33/450 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S H++FDE+P  +VVS    I  +A+  +Y+EA+ LF +M+  N+RP E T  +V+ +  
Sbjct: 187 SAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACA 246

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               + LG+Q+H+W    G   N+ + +A++DLY K   +E A                 
Sbjct: 247 QSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETA----------------- 289

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CGL            FQ + +++V+SWN +IGGY+     +EA+ LF +MLR G  PN
Sbjct: 290 --CGL------------FQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPN 335

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLV 297
             T+   + A A++ A+ +G+  H    K L  +     +  SLI  YAKCG +E +  V
Sbjct: 336 DVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQV 395

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD +  R++ +WNA+I G+A +GR   A + F RMR NGI P+ +T +GLL AC+H+G++
Sbjct: 396 FDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGML 455

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + G   F     +   M K EHY CM+DL   SG FKEA++ +  +  +P    W +LL 
Sbjct: 456 DLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLK 515

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H NVELGE  A+ ++ ++PE+  SYV+LSN  + A +W+ V+  R  + +KGM +V
Sbjct: 516 ACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKV 575

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           PGCS IEI S VH F+ GD+ H  N EIY 
Sbjct: 576 PGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 217/409 (53%), Gaps = 5/409 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD + +  ++   T+    A       A+ L+  M+ L + P+ +TF  ++ S      
Sbjct: 59  VFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXA 118

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+QLH    K G   ++++ ++++ +Y++   +E+A +V + + + +VVSYT +I G
Sbjct: 119 FKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITG 178

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R   E A K+F E+P ++VVSWNA I GY++TG  +EA+ LF +M++  + P+ ST+
Sbjct: 179 YASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A   ++ +G+  H+         ++ + N+LI  Y+KCG +E +  +F  L+ 
Sbjct: 239 VTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSN 298

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN +I GY      +EA+  F+ M  +G +PN VT+L +L AC H G ++ G   
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWI 358

Query: 364 FSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                    G+         ++D+ ++ G   EA + ++D   +  +  W A++ G  +H
Sbjct: 359 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDI-EAAQQVFDSMLNRSLSSWNAMIFGFAMH 417

Query: 423 --SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             +N     F+  R   ++P+D+ ++V L +A S +G  D   +I R M
Sbjct: 418 GRANAAFDIFSRMRKNGIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSM 465



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 35/258 (13%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F  +    ++ WN M  G++ +     A+ L++ M+  GL+PN  T P  + + A 
Sbjct: 56  AISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAK 115

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
             A   G+  H   +KF   LD+++  SLIS Y + G +ED+  V DK + R++V++ A+
Sbjct: 116 SXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTAL 175

Query: 313 ICGYAQNGRGE-------------------------------EAIEFFERMRINGIRPNG 341
           I GYA  G  E                               EA+E F++M    +RP+ 
Sbjct: 176 ITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDE 235

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFL 400
            T++ +L AC  +G +E G    S   + D G     +    ++DL S+ G  + A    
Sbjct: 236 STMVTVLSACAQSGSIELGRQVHSW--INDHGFGXNLKIVNALIDLYSKCGELETACGLF 293

Query: 401 YDLPFDPGIGFWKALLGG 418
             L  +  +  W  L+GG
Sbjct: 294 QGLS-NKDVISWNTLIGG 310


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  324 bits (830), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 171/477 (35%), Positives = 285/477 (59%), Gaps = 8/477 (1%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPS 107
           +S   +S +F      F+++PD ++VS  ++I  +++Q +  EA+ +FS+ML   +++P 
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPD 274

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            FT  S++ +   LE LN+GKQ+HA+  +   +++  VG+A++ +Y K   +E A  + E
Sbjct: 275 NFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVE 334

Query: 168 D--THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
              T N N++++T+++ G  K    + A ++F ++  R+VV+W AMI GY Q G   +A+
Sbjct: 335 HNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDAL 394

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF  M+ EG  PN  TL   +  ++++  L  GK  HA A+K        V N+LI+ Y
Sbjct: 395 ELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMY 454

Query: 286 AKCGSMEDSLLVFDKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           AK G++  +  VFD    ++ IV+W ++I   AQ+G G+EAI  FERM   G++P+ +T 
Sbjct: 455 AKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITY 514

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYD 402
           +G+L AC H GLVE+G  Y++   + +   ++P   HYACM+DL  R+G  +EA  F+  
Sbjct: 515 VGVLSACTHVGLVEQGRKYYNM--MTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIES 572

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P +P    W +LL  C+IH N +L + AA R+L +DP +  +Y+ L+N  S  GKW+N 
Sbjct: 573 MPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENA 632

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +  R+ MK++G+ +  G SWI IK++VH F   D  H   DEIY ++    E+I++ 
Sbjct: 633 AQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKM 689



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 205/390 (52%), Gaps = 36/390 (9%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  ++   F    ++  E+PD + VS T II  + +   ++ AI++F++M+   + PS+
Sbjct: 83  ISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQ 142

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  +V+ S  A + L++G+++H++  K+GL S V V +++L++Y K      A  VF+ 
Sbjct: 143 FTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDR 202

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               N+ ++  +I   ++  +FE A   F++MP R++VSWN+MI GYSQ G N EA+ +F
Sbjct: 203 MTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIF 262

Query: 229 IEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
            +ML E  L P++ TL   + A AN+  L +GK  HA  ++   +    VGN+LIS YAK
Sbjct: 263 SKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAK 322

Query: 288 CGSME-------------------DSLL--------------VFDKLTERNIVTWNAVIC 314
            G +E                    SLL              +F+KL +R++V W A+I 
Sbjct: 323 SGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIV 382

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
           GY QNG   +A+E F  M   G  PN  TL  +L   +   ++E G    + A ++    
Sbjct: 383 GYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA-IKAGES 441

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
             P     ++ + +++G    AK  ++DLP
Sbjct: 442 STPSVTNALIAMYAKTGNINVAKR-VFDLP 470



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 17/279 (6%)

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           SEF F  ++ +S  ++D   G+ +H    K GL   V++ + ++  Y K  S+  A  VF
Sbjct: 10  SEF-FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF 68

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
           ++    +  S+ T+I G  K+  FE + +L  EMP  + VSW A+I GY+Q G  + A+ 
Sbjct: 69  DEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           +F +M+ E + P+  T+   + + A    L +G+  H+  VK      V V  SL++ YA
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYA 188

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCG    + +VFD++T +NI TWNA+I  Y Q+G+ E A   FE+M    I         
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI--------- 239

Query: 347 LLWACNHTGLVEKGYSY-----FSQAKLEDPGMLKPEHY 380
           + W    +G  ++GY+      FS+  L +P  LKP+++
Sbjct: 240 VSWNSMISGYSQQGYNLEALVIFSKM-LNEPS-LKPDNF 276


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 171/477 (35%), Positives = 285/477 (59%), Gaps = 8/477 (1%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPS 107
           +S   +S +F      F+++PD ++VS  ++I  +++Q +  EA+ +FS+ML   +++P 
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPD 274

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            FT  S++ +   LE LN+GKQ+HA+  +   +++  VG+A++ +Y K   +E A  + E
Sbjct: 275 NFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVE 334

Query: 168 D--THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
              T N N++++T+++ G  K    + A ++F ++  R+VV+W AMI GY Q G   +A+
Sbjct: 335 HNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDAL 394

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF  M+ EG  PN  TL   +  ++++  L  GK  HA A+K        V N+LI+ Y
Sbjct: 395 ELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMY 454

Query: 286 AKCGSMEDSLLVFDKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           AK G++  +  VFD    ++ IV+W ++I   AQ+G G+EAI  FERM   G++P+ +T 
Sbjct: 455 AKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITY 514

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYD 402
           +G+L AC H GLVE+G  Y++   + +   ++P   HYACM+DL  R+G  +EA  F+  
Sbjct: 515 VGVLSACTHVGLVEQGRKYYNM--MTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIES 572

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P +P    W +LL  C+IH N +L + AA R+L +DP +  +Y+ L+N  S  GKW+N 
Sbjct: 573 MPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENA 632

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +  R+ MK++G+ +  G SWI IK++VH F   D  H   DEIY ++    E+I++ 
Sbjct: 633 AQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKM 689



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 205/390 (52%), Gaps = 36/390 (9%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  ++   F    ++  E+PD + VS T II  + +   ++ AI++F++M+   + PS+
Sbjct: 83  ISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQ 142

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  +V+ S  A + L++G+++H++  K+GL S V V +++L++Y K      A  VF+ 
Sbjct: 143 FTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDR 202

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               N+ ++  +I   ++  +FE A   F++MP R++VSWN+MI GYSQ G N EA+ +F
Sbjct: 203 MTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIF 262

Query: 229 IEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
            +ML E  L P++ TL   + A AN+  L +GK  HA  ++   +    VGN+LIS YAK
Sbjct: 263 SKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAK 322

Query: 288 CGSME-------------------DSLL--------------VFDKLTERNIVTWNAVIC 314
            G +E                    SLL              +F+KL +R++V W A+I 
Sbjct: 323 SGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIV 382

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
           GY QNG   +A+E F  M   G  PN  TL  +L   +   ++E G    + A ++    
Sbjct: 383 GYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA-IKAGES 441

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
             P     ++ + +++G    AK  ++DLP
Sbjct: 442 STPSVTNALIAMYAKTGNINVAKR-VFDLP 470



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 147/277 (53%), Gaps = 13/277 (4%)

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           SEF F  ++ +S  ++D   G+ +H    K GL   V++ + ++  Y K  S+  A  VF
Sbjct: 10  SEF-FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVF 68

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
           ++    +  S+ T+I G  K+  FE + +L  EMP  + VSW A+I GY+Q G  + A+ 
Sbjct: 69  DEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIW 128

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           +F +M+ E + P+  T+   + + A    L +G+  H+  VK      V V  SL++ YA
Sbjct: 129 MFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYA 188

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCG    + +VFD++T +NI TWNA+I  Y Q+G+ E A   FE+M    I         
Sbjct: 189 KCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI--------- 239

Query: 347 LLWACNHTGLVEKGYSYFSQA---KLEDPGMLKPEHY 380
           + W    +G  ++GY+  + A   K+ +   LKP+++
Sbjct: 240 VSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNF 276


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 182/517 (35%), Positives = 280/517 (54%), Gaps = 45/517 (8%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
            +  C  S +L    K+H+    +L  ++ A    L+   I      CGS  +      +
Sbjct: 57  FITACAQSKNLEDARKVHA----HLASSRFAGDAFLDNSLIHL-YCKCGSVLE----ARK 107

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFDE+   ++VS T++I  +A+    EEAI L   ML    +P+ FTF S++ ++ A  D
Sbjct: 108 VFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHAD 167

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             +G+Q+HA A K     +V+VGSA+LD+Y +   ++ AT VF+                
Sbjct: 168 SGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFD---------------- 211

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          ++  +N VSWNA+I G+++ G  E A+  F EMLR G    H T 
Sbjct: 212 ---------------KLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTY 256

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                + A + AL  GK  HA  +K   K+  F GN+L+  YAK GSM D+  VFD++ +
Sbjct: 257 SSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDD 316

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++VTWN ++  +AQ G G+EA+  FE MR +GI  N VT L +L AC+H GLV++G  Y
Sbjct: 317 KDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRY 376

Query: 364 FSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F   K  D   L+PE  H+  +V LL R+G    A  F++ +P +P    W ALL  C++
Sbjct: 377 FEMMKEYD---LEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRM 433

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ++G+FAA  +  LDP+D    V+L N  +  G+WD  + +RR MK  G+ + P CS
Sbjct: 434 HKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACS 493

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+E+++ VH+FV  D  H   +EIY +    +++IR+
Sbjct: 494 WVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRK 530


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 165/455 (36%), Positives = 266/455 (58%), Gaps = 31/455 (6%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ + D + ++ TT++    +     EA+ +F RM    +   ++TFGS++ +  AL  
Sbjct: 237 VFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAA 296

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              GKQ+HA+  +     N+FVGSA++D+Y K  SI  A  VF                 
Sbjct: 297 SEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVF----------------- 339

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                         + M  +N++SW AMI GY Q G  EEAV +F EM  +G+ PN  TL
Sbjct: 340 --------------RRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTL 385

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I + AN+A+L  G  FH  A+    +  + V ++L++ Y KCGS+ED+  +FD++  
Sbjct: 386 GSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPF 445

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            + V++ A++ GYAQ G+ +E I+ FE+M + G++PNGVT +G+L AC+ +GLVEKG SY
Sbjct: 446 HDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSY 505

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F   + +   +L  +HY CM+DL SRSGR KEA+EF+  +P  P    W  LL  C++  
Sbjct: 506 FHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRG 565

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           ++E+G++AA  +L  DP++ +SYV+L +  +  G+W  V+ +RR M+++ + + PGCSWI
Sbjct: 566 DMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWI 625

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + K++VH+F   D++H  +  IY  L+    ++ E
Sbjct: 626 KYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAE 660



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/475 (28%), Positives = 236/475 (49%), Gaps = 44/475 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHY------------EEAIYLFSRMLLLNIRPSEFT 110
           ++F  +P  + VS   +I  F+                 EEA+   +R     +RPS  T
Sbjct: 97  RLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGAR-----VRPSRIT 151

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              ++ +++AL D  LG+Q+H    ++G  +  F  S ++D+Y K+  I +A RVF++  
Sbjct: 152 MSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMV 211

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             NVV Y TMI GLL+ +  E+A  +F+ M  R+ ++W  M+ G +Q G   EA+++F  
Sbjct: 212 VKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRR 271

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  EG+  +  T    + A   +AA   GK  HA  ++ L   ++FVG++L+  Y+KC S
Sbjct: 272 MRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRS 331

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  VF ++T +NI++W A+I GY QNG GEEA+  F  M+ +GI+PN  TL  ++ +
Sbjct: 332 IRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISS 391

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C +   +E+G  +   A +     L+P     + +V L  + G  ++A     ++PF   
Sbjct: 392 CANLASLEEGAQFHCMALVSG---LRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQ 448

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRIL-ALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
           + +   + G  Q     E  +   + +L  + P  V +++ + +A S +G          
Sbjct: 449 VSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGV-TFIGVLSACSRSG---------- 497

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA---VLRSCTEQIREF 519
            + EK      GCS+     + H  V  D ++    ++Y+    L+   E IR+ 
Sbjct: 498 -LVEK------GCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQM 545



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 40/257 (15%)

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
            +V + +L  Y +   +  A R+F+   +PN+ +   ++  L       D  +LF  MP 
Sbjct: 45  TYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQ 104

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-------PNHSTLPCAIIAAANIAA 255
           R+ VS+NA+I G+S  G    A   +  +LRE  V       P+  T+   ++AA+ +  
Sbjct: 105 RDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGD 164

Query: 256 LGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV------- 307
             +G+  H C +  LG     F  + L+  YAK G + D+  VFD++  +N+V       
Sbjct: 165 RALGRQVH-CQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMIT 223

Query: 308 ------------------------TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
                                   TW  ++ G  QNG   EA++ F RMR  G+  +  T
Sbjct: 224 GLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYT 283

Query: 344 LLGLLWACNHTGLVEKG 360
              +L AC      E+G
Sbjct: 284 FGSILTACGALAASEEG 300



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 16/192 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D     H++FDE+P  + VS T ++  +A+    +E I LF +MLL  ++P+  T
Sbjct: 430 CGSIED----AHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVT 485

Query: 111 FGSVIPSSTALEDLNLG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           F  V+ + +    +  G    H+     G+       + ++DLY +   ++EA       
Sbjct: 486 FIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQM 545

Query: 170 HN-PNVVSYTTMICGLLKRERFE----DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
              P+ + + T++     R   E     A  L +  P +N  S+  +   ++  G   E 
Sbjct: 546 PRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDP-QNPASYVLLCSMHASKGEWSE- 603

Query: 225 VNLFIEMLREGL 236
               + +LR G+
Sbjct: 604 ----VALLRRGM 611


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 266/459 (57%), Gaps = 31/459 (6%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +   ++D    ++VV  +T+I  +      E+A+ +F  +L   I+P+  T  SV+P+  
Sbjct: 396 TARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACA 455

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           ++  L LG+++H +  +   +   +V SA++D+Y K                        
Sbjct: 456 SISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAK------------------------ 491

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CG L    +     +F +M  ++ V+WN+MI  +SQ G  +EA++LF +M  EG+  N
Sbjct: 492 --CGRLDLSHY-----IFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYN 544

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           + T+  A+ A A++ A+  GK  H   +K   K D+F  ++LI  YAKCG+ME +L VF+
Sbjct: 545 NVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFE 604

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + ++N V+WN++I  Y  +G  +E++ F  RM+  G +P+ VT L L+ AC H GLVE+
Sbjct: 605 FMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEE 664

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G   F     E     + EH+ACMVDL SRSGR  +A +F+ D+PF P  G W ALL  C
Sbjct: 665 GLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHAC 724

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H NVEL + A++ +  LDP +   YV++SN  +VAG+WD VS +RR MK+  + ++PG
Sbjct: 725 RVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPG 784

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            SW+++ +  H+FV  D++H  +++IY  L++  +++RE
Sbjct: 785 YSWVDVNNSSHLFVASDKSHPESEDIYTSLKALLQELRE 823



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 145/309 (46%), Gaps = 36/309 (11%)

Query: 57  KFSSVHQVFDEVPDLNVVSATT---IIGRFAKQHHYEEAIYLFSRMLLLNIRPSE--FTF 111
           +F     VF  +P     S+     +I  F    H+  A+  + +M      PS    T 
Sbjct: 85  RFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTL 144

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
             V+ S  AL  ++LG+ +H  A   GL S+V+VGSA++ +Y                  
Sbjct: 145 PYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSD---------------- 188

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                      GLL+     DA   F  MP R+ V WN M+ GY + G    AV LF  M
Sbjct: 189 ----------AGLLR-----DARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNM 233

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
              G  PN +TL C +   A  A L  G   H+ AVK   + +V V N+L+S YAKC  +
Sbjct: 234 RVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCL 293

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +D+  +F+ L   ++VTWN +I G  QNG  +EA+  F  M  +G RP+ VTL+ LL A 
Sbjct: 294 DDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPAL 353

Query: 352 NHTGLVEKG 360
                +++G
Sbjct: 354 TDLNGLKQG 362



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 132/299 (44%), Gaps = 31/299 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S++         FD +P  + V    ++  + K      A+ LF  M +    P+  T  
Sbjct: 187 SDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLA 246

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
             +    A  DL  G QLH+ A K GL+  V V + +L +Y K   +++A R+FE     
Sbjct: 247 CFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRD 306

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           ++V++  MI G ++                                G  +EA+ LF +ML
Sbjct: 307 DLVTWNGMISGCVQ-------------------------------NGLLDEALGLFCDML 335

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R G  P+  TL   + A  ++  L  GK  H   ++    +D F+ ++L+  Y KC  + 
Sbjct: 336 RSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVR 395

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            +  ++D     ++V  + VI GY  NG  E+A++ F  +    I+PN VT+  +L AC
Sbjct: 396 TARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPAC 454


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  323 bits (829), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 170/449 (37%), Positives = 259/449 (57%), Gaps = 5/449 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +V D +P  N VS  T+I R  ++    EA+ L+S+ML    RP+   F SV+ +   L+
Sbjct: 334 RVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQ 393

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL  G ++HA A K+G  +N+FV S+++D+Y K      A RVF      N V + ++I 
Sbjct: 394 DLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLIS 453

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     +  +A  LF +MP RN VSWN MI GY++  R  +A+N F  ML  G +P   T
Sbjct: 454 GYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEIT 513

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   ++A AN+ +L MG+  HA  VK   + ++F+G +L   YAK G ++ S  VF ++ 
Sbjct: 514 LSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMP 573

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+N +TW A++ G A+NG  EE+I  FE M  NGI PN  T L +L+AC+H GLVE+   
Sbjct: 574 EKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIH 633

Query: 363 YFS--QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF   QA    P   K +HY CMVD+L+R+G   EA+E L  +  +     W +LL  C 
Sbjct: 634 YFETMQAHGIPP---KSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACS 690

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            + N E+GE AA+++  L+ ++ + YV+LSN  +  GKW + +  R  M+   + +  GC
Sbjct: 691 TYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLKKDAGC 750

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           SW++++ + H F +    H ++ EIY +L
Sbjct: 751 SWLQLRGQYHAFFSWKEKHPLSLEIYEIL 779



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 179/391 (45%), Gaps = 40/391 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++++  P  +V   T +I  F +   +++A  +F +ML  ++RP+  T   VI +     
Sbjct: 201 ELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAG 260

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + +L   +   A K  L + ++ V ++++ LY+++     A RVF+D    +VVS+T ++
Sbjct: 261 EFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALL 320

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                      A ++   MP RN VSW  +I  + Q G   EA+ L+ +ML +G  PN S
Sbjct: 321 DVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNIS 380

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A A +  L  G   HA A+K     ++FV +SLI  Y KC     +  VF+ L
Sbjct: 381 CFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSL 440

Query: 302 TERNIVTWNAVICGYAQNG-------------------------------RGEEAIEFFE 330
            E+N V WN++I GY+ NG                               R  +A+ +F 
Sbjct: 441 PEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFY 500

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLL 387
            M  +G  P  +TL  +L AC +   +E G   ++   +  +ED   +       + D+ 
Sbjct: 501 AMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMG----TALSDMY 556

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           ++SG    ++   Y +P    I  W A++ G
Sbjct: 557 AKSGDLDSSRRVFYQMPEKNNIT-WTAMVQG 586



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 7/239 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S + K      +F+++P  N VS  T+I  +A+   + +A+  F  ML     P E
Sbjct: 452 ISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGE 511

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  SV+ +   L  L +G+ +HA   K+G++ N+F+G+A+ D+Y K   ++ + RVF  
Sbjct: 512 ITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQ 571

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEA 224
               N +++T M+ GL +    E+++ LF++M    +     ++ A++   S  G  E+A
Sbjct: 572 MPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQA 631

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           ++ F  M   G+ P      C +   A    L   +      +K   +LD    +SL+S
Sbjct: 632 IHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEEL---LMKVSSELDTSSWSSLLS 687



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 32/231 (13%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           ++K   I  A R+F      +VVSYTTM+  L+KR    DA++L++  P  +V  + AMI
Sbjct: 159 HVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMI 218

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LG 271
            G+ +   +++A  +F +ML   + PN  TL C I A        +       AVK  L 
Sbjct: 219 SGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLF 278

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA-------------- 317
           +  + V NSLI+ Y + G    +  VFD +  R++V+W A++  YA              
Sbjct: 279 EKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDA 338

Query: 318 -----------------QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
                            Q G   EA++ + +M  +G RPN      +L AC
Sbjct: 339 MPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSAC 389



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
            +++    K GS+ D++ ++++    ++  + A+I G+ +N   ++A   F +M    +R
Sbjct: 184 TTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVR 243

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           PN VTL+ ++ AC   G  +        A   +      E +  ++ L  R G    A  
Sbjct: 244 PNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHR 303

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGE-FAARRILALDP 440
              D+     +  W ALL    +++  +LG+ + ARR+L   P
Sbjct: 304 VFDDMEVRDVVS-WTALL---DVYA--DLGDLYGARRVLDAMP 340


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  323 bits (829), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 166/441 (37%), Positives = 257/441 (58%), Gaps = 4/441 (0%)

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST---ALEDLNLGKQ 129
           +VS TT I  + K  H  +A   F +M    I P+  TF +++ +     +   ++ G  
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115

Query: 130 LHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           +HA   K+GL  N V VG+A++D+Y K   +E A   F+     N+VS+ TMI G ++  
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
           +FEDAL++F  +P +N +SW A+IGG+ +   +EEA+  F EM   G+ P++ T+   I 
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A AN+  LG+G   H   +    + +V V NSLI  Y++CG ++ +  VFD++ +R +V+
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVS 295

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           WN++I G+A NG  +EA+ +F  M+  G +P+GV+  G L AC+H GL+ +G   F   K
Sbjct: 296 WNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMK 355

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
                + + EHY C+VDL SR+GR +EA   L ++P  P      +LL  C+   N+ L 
Sbjct: 356 RVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLA 415

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
           E     ++ LD    S+YV+LSN  +  GKWD  + +RR MKE+G+ + PG S IEI S 
Sbjct: 416 ENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSS 475

Query: 489 VHVFVTGDRNHHMNDEIYAVL 509
           +H FV+GD++H   D IYA L
Sbjct: 476 IHKFVSGDKSHEEKDHIYAAL 496



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 118/262 (45%), Gaps = 40/262 (15%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           KF    QVFD +P  N +S T +IG F K+ ++EEA+  F  M L  + P   T  +VI 
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L LG  +H        ++NV V ++++D+Y +   I+ A +VF+      +VS
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVS 295

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + ++I                                G++  G  +EA++ F  M  EG 
Sbjct: 296 WNSIIV-------------------------------GFAVNGLADEALSYFNSMQEEGF 324

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSF--HACAV-KFLGKLDVFVGNSLISFYAKCGSMED 293
            P+  +   A++A ++   +G G     H   V + L +++ +    L+  Y++ G +E+
Sbjct: 325 KPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHY--GCLVDLYSRAGRLEE 382

Query: 294 SLLVFDKLTERNIVTWNAVICG 315
           +L V   +  +     N VI G
Sbjct: 383 ALNVLKNMPMKP----NEVILG 400


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/475 (36%), Positives = 276/475 (58%), Gaps = 11/475 (2%)

Query: 47  DSVSCGSESDKFSSV------HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           D+  C S  D ++ V       QVF+E+P  +VVS   +I  + K   YE+A+ +F RM 
Sbjct: 166 DTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQ 225

Query: 101 LLN-IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
             + +RP+E T  S + +  AL+ L LGK++H +  +  L   + +G+A++D+Y K   +
Sbjct: 226 QQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVRE-QLGFTIKIGNALVDMYCKCGHL 284

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
             A  +F D     V+ +T+M+ G +   + ++A +LF+  P R+VV W AMI GY Q  
Sbjct: 285 SIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFN 344

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
           R ++AV LF EM  + + P+  TL   +   A +  L  GK  H    +    +D  VG 
Sbjct: 345 RFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGT 404

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           +LI  YAKCG +E SL +F+ L E++  +W ++ICG A NG+  +A+E F  M   G++P
Sbjct: 405 ALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKP 464

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           + +T +G+L AC+H GLVE+G  +F           K EHY C++DLL R+G+  EA+E 
Sbjct: 465 DDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEEL 524

Query: 400 LYDLP---FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
           +   P    +  +  + ALL  C+ H NVE+GE  A+R++ ++  D S + +L+N  + A
Sbjct: 525 IEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASA 584

Query: 457 GKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
            +W++V+ +RR+MK+ G+ +VPGCS +E+   VH F+ GD +H    EIY++L S
Sbjct: 585 DRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDS 639



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/463 (20%), Positives = 204/463 (44%), Gaps = 84/463 (18%)

Query: 36  VQKLETPAIRTDSVSCGSESDKF---------SSVH---QVFDEVPDLNVVSATTIIGRF 83
           +++++T  +RT     G   +KF          ++H   ++F+ +    +     +I  F
Sbjct: 48  LKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAF 107

Query: 84  AKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNV 143
            K   + +A+ LF ++    + P  FT+  V  +   L ++  G++++ +  K GL+ + 
Sbjct: 108 TKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDT 167

Query: 144 FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
           +V ++++D+Y ++  ++   +VFE+    +VVS+  +I G +K  R+EDA+ +F+ M  +
Sbjct: 168 YVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQ 227

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           +                               L PN +T+   + A   +  L +GK  H
Sbjct: 228 S------------------------------SLRPNEATVVSTLSACIALKMLELGKEIH 257

Query: 264 ACAVKFLGKLDVFVGNSLISFYAK-------------------------------CGSME 292
               + LG   + +GN+L+  Y K                               CG ++
Sbjct: 258 RYVREQLG-FTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLD 316

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++  +F++   R++V W A+I GY Q  R ++A+  F  M+I  + P+  TL+ LL  C 
Sbjct: 317 EARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCA 376

Query: 353 HTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
             G +E+G   + Y  + K+    M+       ++++ ++ G  +++ E    L  +   
Sbjct: 377 QLGTLEQGKWIHGYIDENKI----MIDAVVGTALIEMYAKCGFIEKSLEIFNGLK-EKDT 431

Query: 410 GFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
             W +++ G  ++      L  FA      + P+D++   +LS
Sbjct: 432 ASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLS 474



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 11/283 (3%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A ++F  +    +  +N +I  +++ G   +AV LF ++  EGL P++ T P    A   
Sbjct: 85  AERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGC 144

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           +  +  G+  +   VK   + D +V NSL+  YA+ G +++   VF+++ +R++V+WN +
Sbjct: 145 LGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVL 204

Query: 313 ICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           I GY +  R E+A++ F RM + + +RPN  T++  L AC    ++E G       + + 
Sbjct: 205 ISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQL 264

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF- 430
              +K  +   +VD+  + G    A+E   D+P    I  W +++ G      V  G+  
Sbjct: 265 GFTIKIGN--ALVDMYCKCGHLSIAREIFNDMPIKTVI-CWTSMVSG-----YVNCGQLD 316

Query: 431 AARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            AR +    P  DV  +  + N      ++D+   + REM+ K
Sbjct: 317 EARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIK 359


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 181/517 (35%), Positives = 279/517 (53%), Gaps = 45/517 (8%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
            +  C  S +L+   K+H+    +L  ++ A    L+   I      CGS        H+
Sbjct: 57  FITACAQSKNLDDARKIHA----HLASSRFAGDAFLDNSLIHL-YCKCGS----VVEAHK 107

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD++ + ++VS T++I  +A+     EAI L   ML    +P+ FTF S++ +  A  D
Sbjct: 108 VFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYAD 167

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             +G Q+HA A K     +V+VGSA+LD+Y +   ++ AT VF+                
Sbjct: 168 SGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFD---------------- 211

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          ++  +N VSWNA+I G+++ G  E A+ +F EM R G    H T 
Sbjct: 212 ---------------KLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTY 256

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                A A I AL  GK  HA  +K   KL  FVGN+++  YAK GSM D+  VF+++  
Sbjct: 257 SSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLN 316

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++VTWN+++  +AQ G G+EA+  FE MR +GI  N ++ L +L AC+H GLV++G  Y
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHY 376

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F   K  +   L+P  EHY  +VDLL R+G    A  F++ +P +P    W ALL  C++
Sbjct: 377 FDMIKEYN---LEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRM 433

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ++G+FAA  +  LDP+D    V+L N  +  G WD  + +R+ MK  G+ + P CS
Sbjct: 434 HKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACS 493

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+EI++ VH+FV  D  H   +EIY +    + +IR+
Sbjct: 494 WVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRK 530


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 168/461 (36%), Positives = 277/461 (60%), Gaps = 2/461 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTAL 121
           +VFDE+P+ +VVS TT++  +A+    +EA  LF RM+++  +RP+  T  + + +   +
Sbjct: 199 KVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQM 258

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  G  LH + T+ G+  +V + +A++D++ K   +  A  VF+     +V S+T+M+
Sbjct: 259 GLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMV 318

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               K    E A +LF++MP RNVVSW+ MI  YSQ  + EEAV LF EM+  G+ P  +
Sbjct: 319 NAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDA 378

Query: 242 TLPCAIIAAANIAALGMGK-SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           TL   + A A +  L +G+  +    V     L V +GN+LI  +AKCG + ++  +FD+
Sbjct: 379 TLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDE 438

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN+V+WN +I  +A +G+ EEAI  FE+++   I P+ +T LGLL +C+H+GLV +G
Sbjct: 439 MAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEG 498

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             YF + ++      + EHYACM+DLL + G  +EA E    +P +     W ALL  C+
Sbjct: 499 RRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACR 558

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H NVE+G   A +++ LDP D   YV++S   +   KWD V  +R  M+++G+ + PGC
Sbjct: 559 MHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGC 618

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
           S IE++ K H F+  D +H  ++EIY+ L++    +++ ++
Sbjct: 619 SSIEVEGKFHDFLVADVSHACSEEIYSALKNIYFHLKQEDM 659



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 33/269 (12%)

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNHSTLPCAII 248
            +DA K+F EMP R+VVSW  ++ GY++ G  +EA  LF  M +  G+ PN  TL  A+ 
Sbjct: 194 LDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVS 253

Query: 249 AAANIAALGMGKSFHA---------------CAVKFLGKL----------------DVFV 277
           A   +  L  G   H                  V   GK                 DV+ 
Sbjct: 254 AIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYS 313

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
             S+++ YAKCG +E +  +F  +  RN+V+W+ +I  Y+Q  + EEA+  F  M   G+
Sbjct: 314 WTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGV 373

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            P   TL+ +L AC   G ++ G   +    + +   L       ++D+ ++ G   EA 
Sbjct: 374 DPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEAS 433

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           + L+D   +  +  W  ++    +H   E
Sbjct: 434 K-LFDEMAERNVVSWNTMIMAHAVHGQSE 461



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 106/193 (54%), Gaps = 9/193 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+  ++     S  Q+F ++P  NVVS + +I  +++ +  EEA++LF  M+   + 
Sbjct: 315 TSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVD 374

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHA---WATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           P + T  SV+ +   L  L+LG+ ++     + K+GL  N  +G+A++D++ K   + EA
Sbjct: 375 PIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVN--LGNALIDMFAKCGDVGEA 432

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQT 218
           +++F++    NVVS+ TMI       + E+A++LF+++   N+V    ++  ++   S +
Sbjct: 433 SKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHS 492

Query: 219 GRNEEAVNLFIEM 231
           G   E    F EM
Sbjct: 493 GLVSEGRRYFKEM 505



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 17/210 (8%)

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI------IAAANIA 254
           P  N      M+ G+ +      A+ LF  ++R+ L  +  T   A+        + +  
Sbjct: 97  PGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGG 156

Query: 255 ALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
               G++ H  A+K  F+G+  V VGN+L+ FYA   S++D+  VFD++ ER++V+W  +
Sbjct: 157 TPSGGEAIHCAALKCGFVGE-SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTL 215

Query: 313 ICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAK 368
           + GYA+ G  +EA   F RM  + G+RPN VTL+  + A    GL+  G   + Y ++  
Sbjct: 216 VDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGG 275

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           +     L       +VD+  + G  + A+E
Sbjct: 276 VARSVNLD----NALVDMFGKCGCVRYARE 301


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 167/458 (36%), Positives = 270/458 (58%), Gaps = 4/458 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF +V   N    T +I  +A Q    E+   ++RM    + P  FTF ++  +  A  +
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 124 LNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           ++LGKQ+HA    +G   S+++VG++++DLY+K   +  A +VF++    +VVS+T +I 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
              K    E A  LF ++P +++V+W AM+ GY+Q GR +EA+  F +M   G+  +  T
Sbjct: 218 AYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 243 LPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           L   I A A + A+         A +  F    +V VG++LI  Y+KCGS +++  VF+ 
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN+ +++++I GYA +GR   A++ F  M    IRPN VT +G+L AC+H GLVE+G
Sbjct: 338 MKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQG 397

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              F++ +        P+HYACMVDLL R+G  +EA + +  +P +P  G W ALLG C+
Sbjct: 398 RQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACR 457

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH N ++ + AA  +  L+P  + +Y++LSN  + AG+W+ VS +R+ ++EKG  + PGC
Sbjct: 458 IHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGC 517

Query: 481 SWIEIKS-KVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           SW E K+ ++H F  GD  H  + EI   L+   E++R
Sbjct: 518 SWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLR 555



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 32/197 (16%)

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
           L +F ++ + N   W AMI GY+  G   E+ N +  M R+G+ P   T      A    
Sbjct: 96  LLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAA 155

Query: 254 AALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT---- 308
             + +GK  HA  +   G   D++VGNS+I  Y KCG +  +  VFD+++ER++V+    
Sbjct: 156 LNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTEL 215

Query: 309 ---------------------------WNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                      W A++ GYAQNGR +EA+E+F++M+  G+  + 
Sbjct: 216 IVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDE 275

Query: 342 VTLLGLLWACNHTGLVE 358
           VTL G++ AC   G V+
Sbjct: 276 VTLAGVISACAQLGAVK 292



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 7/195 (3%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S   +FD++P  ++V+ T ++  +A+    +EA+  F +M  + +   E T   VI +  
Sbjct: 227 SASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACA 286

Query: 120 ALEDLNLGKQLHAWATKVGL--QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            L  +     +   A + G     NV VGSA++D+Y K  S +EA +VFE     NV SY
Sbjct: 287 QLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSY 346

Query: 178 TTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           ++MI G     R   AL+LF +M       N V++  ++   S  G  E+   LF +M +
Sbjct: 347 SSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK 406

Query: 234 -EGLVPNHSTLPCAI 247
             G+ P+     C +
Sbjct: 407 FFGVAPSPDHYACMV 421



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 89/210 (42%), Gaps = 21/210 (10%)

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           ++ L K+DV +G+               LLVF ++   N   W A+I GYA  G   E+ 
Sbjct: 81  IRMLTKVDVPMGSY-------------PLLVFGQVNYPNPFLWTAMIRGYALQGLLSEST 127

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMV 384
            F+ RMR +G+ P   T   L  AC     ++ G    +Q  L   G    + Y    M+
Sbjct: 128 NFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTIL--IGGFASDLYVGNSMI 185

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444
           DL  + G    A++ ++D   +  +  W  L+     + ++   E A+     L  +D+ 
Sbjct: 186 DLYVKCGFLGCARK-VFDEMSERDVVSWTELIVAYAKYGDM---ESASGLFDDLPSKDMV 241

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           ++  +    +  G+        ++M++ GM
Sbjct: 242 AWTAMVTGYAQNGRPKEALEYFQKMQDVGM 271



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 35/164 (21%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  + +    +VF+ + + NV S +++I  +A       A+ LF  ML   IRP++ T
Sbjct: 325 CGSPDEAY----KVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVT 380

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  ++ + +    +  G+QL A   K       F G A                      
Sbjct: 381 FIGILSACSHAGLVEQGRQLFAKMEK-------FFGVA---------------------- 411

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIG 213
            P+   Y  M+  L +    E+AL L + MP   N   W A++G
Sbjct: 412 -PSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLG 454


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/426 (38%), Positives = 251/426 (58%), Gaps = 4/426 (0%)

Query: 96  FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
           ++RM  L +    FT   V+ S   L  + +G+ +H    +VGL+ + +VG++++D+Y+K
Sbjct: 95  YARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK 154

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
              I +A ++F+     ++ S+  +I G +K      A  LF+ M HRN+VSW AMI GY
Sbjct: 155 CGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGY 214

Query: 216 SQTGRNEEAVNLFIEMLREG--LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           +Q G  E+A+ LF EML++G  + PN  T+   + A A  AAL  G+  H  A      L
Sbjct: 215 TQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHL 274

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFER 331
           +  V  +L   YAKC S+ ++   FD + +  +N++ WN +I  YA +G G EA+  FE 
Sbjct: 275 NSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN 334

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           M   G++P+ VT +GLL  C+H+GL++ G ++F+          + EHYAC+VDLL R+G
Sbjct: 335 MLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAG 394

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451
           R  EAKE +  +P   G   W ALL  C+ H N+E+ E AARR+  L+P++  +YV+LSN
Sbjct: 395 RLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSN 454

Query: 452 ALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
             + AG W+ V  +R  +K +GM + PGCSWIEI  K H+F+  D++H    EIY  L +
Sbjct: 455 LYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEA 514

Query: 512 CTEQIR 517
             E+I+
Sbjct: 515 LPEKIK 520



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 8/177 (4%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL--LNIRPSEFTFGSVIPSSTA 120
            +F+ +   N+VS T +I  + +    E+A+ LF  ML     ++P+  T  SV+P+   
Sbjct: 194 DLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ 253

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE--DTHNPNVVSYT 178
              L  G+++H +A  +GL  N  V +A+  +Y K  S+ EA   F+    +  N++++ 
Sbjct: 254 SAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWN 313

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEM 231
           TMI          +A+ +F+ M    V    V++  ++ G S +G  +  +N F +M
Sbjct: 314 TMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDM 370


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/444 (38%), Positives = 257/444 (57%), Gaps = 33/444 (7%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS + +I   A+    +EAI  F  M +  ++  ++ FGSV+P+   L  +N G+Q+HA 
Sbjct: 233 VSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHAC 292

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             +  LQ +++VGSA++D+Y K   +  A  VF+                          
Sbjct: 293 IIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFD-------------------------- 326

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
                 M  +NVVSW AM+ GY QTGR  EAV +F++M R G+ P+H TL  AI A ANI
Sbjct: 327 -----RMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANI 381

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           ++L  G  FH  A+       + V NSL++ Y KCG ++DS  +F+++  R+ V+W A++
Sbjct: 382 SSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMV 441

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
             YAQ GR  EAI+ F++M   G++P+GVTL G++ AC+  GLVEKG  YF +  + + G
Sbjct: 442 SAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYF-ELMINEYG 500

Query: 374 MLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
           ++    HY+CM+DL SRSGR +EA  F+  +PF P    W  LL  C+   N+E+G++AA
Sbjct: 501 IVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAA 560

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVF 492
             ++ LDP   + Y +LS+  +  GKWD V+ +RR MKEK + + PG SWI+ K K+H F
Sbjct: 561 ESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSF 620

Query: 493 VTGDRNHHMNDEIYAVLRSCTEQI 516
              D +   +D+IYA L    ++I
Sbjct: 621 SADDESSPYSDQIYAKLEELYQKI 644



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 178/316 (56%), Gaps = 2/316 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTF 111
           S+S   S + + F+++PD + V+   +I  ++       A+  ++ M+   +   +  T 
Sbjct: 80  SKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTL 139

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            +++  S++   ++LGKQ+H    K+G +S + VGS +LD+Y K+  I +A +VF    +
Sbjct: 140 MTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDD 199

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            N V Y T++ GLL     EDAL+LF+ M  ++ VSW+AMI G +Q G  +EA+  F EM
Sbjct: 200 RNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREM 258

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             EGL  +       + A   + A+  G+  HAC ++   +  ++VG++LI  Y KC  +
Sbjct: 259 KIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCL 318

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             +  VFD++ ++N+V+W A++ GY Q GR  EA++ F  M+ +GI P+  TL   + AC
Sbjct: 319 HYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISAC 378

Query: 352 NHTGLVEKGYSYFSQA 367
            +   +E+G  +  +A
Sbjct: 379 ANISSLEEGSQFHGKA 394



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 170/411 (41%), Gaps = 72/411 (17%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K +H    +       F+ + I+  Y  + S   A RVF+    PN+ S+  ++    K 
Sbjct: 23  KMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKS 82

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS--TLPC 245
               +  + F+++P R+ V+WN +I GYS +G    AV  +  M+++    N +  TL  
Sbjct: 83  GHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKD-FSSNLTRVTLMT 141

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            +  +++   + +GK  H   +K   +  + VG+ L+  Y+K G + D+  VF  L +RN
Sbjct: 142 MLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRN 201

Query: 306 I------------------------------VTWNAVICGYAQNGRGEEAIEFFERMRIN 335
                                          V+W+A+I G AQNG  +EAIE F  M+I 
Sbjct: 202 TVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIE 261

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKG--------------YSYFSQAKLEDPGMLKPEHYA 381
           G++ +      +L AC   G +  G              + Y   A ++     K  HYA
Sbjct: 262 GLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYA 321

Query: 382 ----------------CMVDLLSRSGRFKEAKEFLYDLP---FDPGIGFWKALLGGCQIH 422
                            MV    ++GR  EA +   D+     DP        +  C   
Sbjct: 322 KTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANI 381

Query: 423 SNVELG-EFAARRILALDPEDVSSYVMLSNAL-SVAGKWDNVSNIRREMKE 471
           S++E G +F  + I A     +  Y+ +SN+L ++ GK  ++ +  R   E
Sbjct: 382 SSLEEGSQFHGKAITA----GLIHYITVSNSLVTLYGKCGDIDDSTRLFNE 428


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 267/467 (57%), Gaps = 35/467 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D       VFD++   +V+S T +IG  AK     EA+ ++  M    + P+  T
Sbjct: 376 CGSIKD----ARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVT 431

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + S++ + ++   L  G+++H    + GL ++  VG+ ++++Y                 
Sbjct: 432 YTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMY----------------- 474

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                     +CG +K     DA ++F  M  R++V++NAMIGGY+     +EA+ LF  
Sbjct: 475 ---------SMCGSVK-----DARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDR 520

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           +  EGL P+  T    + A AN  +L   +  H    K     D  VGN+L+S YAKCGS
Sbjct: 521 LQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGS 580

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
             D+ +VF+K+T+RN+++WNA+I G AQ+GRG++A++ FERM++ G++P+ VT + LL A
Sbjct: 581 FSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSA 640

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H GL+E+G  YF     +   +   EHY CMVDLL R+G+  EA+  +  +PF     
Sbjct: 641 CSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTR 700

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALLG C+IH NV + E AA   L LD ++   YV LS+  + AG WD+ + +R+ M+
Sbjct: 701 IWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLME 760

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           ++G+T+ PG SWI++  K+H FV  DR+H  +++IYA L   T  ++
Sbjct: 761 QRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMK 807



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 218/428 (50%), Gaps = 46/428 (10%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS         +VFD++   +VVS T  IG +A     E A  +F +M    + P+  T
Sbjct: 174 CGS----IEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRIT 229

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + SV+ + ++   L  GK +H+     G +S+  VG+A++ +Y K               
Sbjct: 230 YISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAK--------------- 274

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                      CG      ++D  ++F+++ +R++++WN MIGG ++ G  EEA  ++ +
Sbjct: 275 -----------CG-----SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQ 318

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M REG++PN  T    + A  N AAL  GK  H+   K     D+ V N+LIS Y++CGS
Sbjct: 319 MQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGS 378

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++D+ LVFDK+  +++++W A+I G A++G G EA+  ++ M+  G+ PN VT   +L A
Sbjct: 379 IKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNA 438

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C+    +E G     Q  + + G+    H    +V++ S  G  K+A++ ++D      I
Sbjct: 439 CSSPAALEWGRRIHQQ--VVEAGLATDAHVGNTLVNMYSMCGSVKDARQ-VFDRMIQRDI 495

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPE----DVSSYVMLSNALSVAGKWDNVSNI 465
             + A++GG   H+   LG+ A +    L  E    D  +Y+ + NA + +G  +    I
Sbjct: 496 VAYNAMIGGYAAHN---LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREI 552

Query: 466 RREMKEKG 473
              +++ G
Sbjct: 553 HTLVRKGG 560



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 153/304 (50%), Gaps = 43/304 (14%)

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           ++DL  G+Q+H    +     + +  +A++++YI+  SIEEA +V++       +SY   
Sbjct: 36  VKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKK------LSYM-- 87

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                                 R V SWNAM+ GY Q G  E+A+ L  +M + GL P+ 
Sbjct: 88  ---------------------ERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           +T+   + +  +  AL  G+  H  A++     DV V N +++ YAKCGS+E++  VFDK
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ++++V+W   I GYA  GR E A E F++M   G+ PN +T + +L A +    ++ G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 361 YSYFSQAKLEDPGMLKPEHYA------CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            +  S+       +L   H +       +V + ++ G +K+ ++    L  +  +  W  
Sbjct: 247 KAVHSR-------ILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNT 298

Query: 415 LLGG 418
           ++GG
Sbjct: 299 MIGG 302



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 123/252 (48%), Gaps = 15/252 (5%)

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           AV++   + ++G   N S     +     +  L  G+  H   ++     D +  N+LI+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 284 FYAKCGSMEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
            Y +CGS+E++  V+ KL+  ER + +WNA++ GY Q G  E+A++   +M+ +G+ P+ 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFL 400
            T++  L +C   G +E G     QA     G+L     A C++++ ++ G  +EA+E +
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKCGSIEEARE-V 183

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS----SYVMLSNALS-- 454
           +D      +  W   +GG   +++    E A      ++ E V     +Y+ + NA S  
Sbjct: 184 FDKMEKKSVVSWTITIGG---YADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240

Query: 455 VAGKWDNVSNIR 466
            A KW    + R
Sbjct: 241 AALKWGKAVHSR 252


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 180/485 (37%), Positives = 269/485 (55%), Gaps = 45/485 (9%)

Query: 47  DSVSC-------GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           D VSC        S  D F S  +VFDE+ + +VVS   +I  + +   YEEA+ LF  M
Sbjct: 129 DVVSCTALITGYASRGD-FRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEM 187

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV----GLQSNVFVGSAILDLYIK 155
           +  N+RP E T  SV+ +      + LG+Q+H+W        G  S++ + +A++DLY K
Sbjct: 188 MRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSK 247

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
                                     CG       E A  LF+ +  ++VVSWN +IGGY
Sbjct: 248 --------------------------CG-----DVETAFGLFEGLSCKDVVSWNTLIGGY 276

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-- 273
           + T   +EA+ LF EMLR G  PN  TL   + A A++ A+ +G+  H    K L  +  
Sbjct: 277 THTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTN 336

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +  +  SLI  YAKCG +E +  VF+ +  R++ +WNA+I G+A +GR   A + F RMR
Sbjct: 337 ETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMR 396

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
            N + P+ +T +GLL AC+H+GL++ G   F     +     K EHY CM+DLL  SG F
Sbjct: 397 GNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLF 456

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
           KEA+E ++ +P +P    W +LL  C+ H N+EL E  A++++ ++PE+  SYV+LSN  
Sbjct: 457 KEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIY 516

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           + AG+W++V+ +R  +  KGM +VPGCS IE+ S VH F+ GD+ H    EIY +L    
Sbjct: 517 ATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMD 576

Query: 514 EQIRE 518
            Q+ E
Sbjct: 577 VQLEE 581



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 217/417 (52%), Gaps = 13/417 (3%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ + + N++   T++   A       A+ ++ RM+ L   P+ ++F  ++ S    + 
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+HA   K+G   + +V ++++ +Y +   +E+A +VF+ + + +VVS T +I G
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITG 139

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R  F  A K+F E+  R+VVSWNAMI GY + GR EEA+ LF EM+R  + P+  TL
Sbjct: 140 YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTL 199

Query: 244 PCAIIAAANIAALGMGKSFHACAVK------FLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
              + A A   ++ +G+  H+          F   L +   N+LI  Y+KCG +E +  +
Sbjct: 200 VSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIV--NALIDLYSKCGDVETAFGL 257

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ L+ +++V+WN +I GY      +EA+  F+ M  +G  PN VTLL +L AC H G +
Sbjct: 258 FEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAI 317

Query: 358 EKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           + G         +  G+         ++D+ ++ G  + A +    + +   +  W A++
Sbjct: 318 DIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR-SLSSWNAMI 376

Query: 417 GGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
            G  +H  +N     F+  R   ++P+D+ ++V L +A S +G  D    I + M +
Sbjct: 377 FGFAMHGRANAAFDLFSRMRGNRVEPDDI-TFVGLLSACSHSGLLDLGRQIFKSMTQ 432



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 127/298 (42%), Gaps = 67/298 (22%)

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           A  VFE    PN                               ++ WN M+ G++ +   
Sbjct: 17  AISVFETIQEPN-------------------------------LLIWNTMLRGHASSSDP 45

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
             A+ +++ M+  G +PN  + P  + + A   A   G+  HA  +K    LD +V  SL
Sbjct: 46  VSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSL 105

Query: 282 ISFYAKCGSMED-------------------------------SLLVFDKLTERNIVTWN 310
           IS YA+ G +ED                               +  VFD++TER++V+WN
Sbjct: 106 ISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWN 165

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQA 367
           A+I GY +NGR EEA+E F+ M    +RP+  TL+ ++ AC  +G +E G   +S+    
Sbjct: 166 AMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDD 225

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
             +       +    ++DL S+ G  + A      L     +  W  L+GG   H+N+
Sbjct: 226 DDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVS-WNTLIGG-YTHTNL 281



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 20/217 (9%)

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VF+ + E N++ WN ++ G+A +     A+E + RM   G  PN  +   LL +C  +  
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKA 79

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
            E+G    +Q      G+ +  H + ++ + +R+G  ++A++ ++D      +    AL+
Sbjct: 80  FEEGRQIHAQVLKLGCGLDRYVHTS-LISMYARNGGLEDARK-VFDASSHRDVVSCTALI 137

Query: 417 GGCQIHSNVELGEF-AARRIL-ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG- 473
            G         G+F +AR++   +   DV S+  +       G+++    + +EM     
Sbjct: 138 TG-----YASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192

Query: 474 -------MTRVPGCSW---IEIKSKVHVFVTGDRNHH 500
                  ++ V  C+    IE+  +VH +V  D + H
Sbjct: 193 RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDH 229


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 167/460 (36%), Positives = 274/460 (59%), Gaps = 8/460 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF +V   N    T +I  +A Q  + E++ L++ M    I P  FTF +++ + +A  D
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 124 LNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +NLG+Q+H     +G   S+++VG+ ++D+Y+K   +    RVF++  + +V+S+T++I 
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIV 214

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
              K    E A +LF  +P +++V+W AM+ GY+Q  R  EA+ +F  M   G+  +  T
Sbjct: 215 AYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVT 274

Query: 243 LPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           L   I A A + A          A +  F    +V VG++LI  YAKCGS+ED+  VF++
Sbjct: 275 LVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFER 334

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN+ +++++I G+A +G    A+E F+ M    I+PN VT +G+L AC+H G+VE+G
Sbjct: 335 MEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQG 394

Query: 361 YSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              F  A +E+   + P  +HYACMVDLL R+GR +EA   +  +P +P  G W ALLG 
Sbjct: 395 QQLF--AMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGA 452

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+IH N ++ + AA  +  L+P  + +Y++LSN  + AG+WD+VS +R+ M+ KG+ + P
Sbjct: 453 CRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNP 512

Query: 479 GCSWIEIKSK-VHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           GCSW+E K   +H F  GD +H  + EI   L    ++++
Sbjct: 513 GCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLK 552



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 137/308 (44%), Gaps = 66/308 (21%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +N  KQ+HA   + GL+   FV + +L    KL        V  D + P +V        
Sbjct: 52  INQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLD-------VPMDPY-PRLV-------- 95

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                        FQ++ + N   W A+I GY+  G   E+V L+  M R+G+ P   T 
Sbjct: 96  -------------FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTF 142

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKC-------------- 288
              + A +    + +G+  H   +   G   D++VGN+LI  Y KC              
Sbjct: 143 TALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEML 202

Query: 289 -----------------GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
                            G+ME +  +FD L  +++V W A++ GYAQN R  EA+E FER
Sbjct: 203 DRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFER 262

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY---ACMVDLLS 388
           M+  G++ + VTL+G++ AC   G  +  Y+ + +   E  G     +    + ++D+ +
Sbjct: 263 MQAAGVKTDEVTLVGVISACAQLGAAK--YANWVRDVAEQSGFGPTSNVVVGSALIDMYA 320

Query: 389 RSGRFKEA 396
           + G  ++A
Sbjct: 321 KCGSVEDA 328



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 42/226 (18%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYE------------------------------- 90
           H+VFDE+ D +V+S T++I  +AK  + E                               
Sbjct: 195 HRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPR 254

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL--QSNVFVGSA 148
           EA+ +F RM    ++  E T   VI +   L        +   A + G    SNV VGSA
Sbjct: 255 EALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSA 314

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM------PH 202
           ++D+Y K  S+E+A +VFE     NV SY++MI G         A++LF EM      P+
Sbjct: 315 LIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPN 374

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAI 247
           R  V++  ++   S  G  E+   LF  M    G+ P+     C +
Sbjct: 375 R--VTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMV 418



 Score = 45.1 bits (105), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 43/179 (24%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D +    +VF+ + + NV S +++I  FA       A+ LF  ML   I+P+  T
Sbjct: 322 CGSVEDAY----KVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVT 377

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  V+ + +    +  G+QL A                                + E+ H
Sbjct: 378 FIGVLTACSHAGMVEQGQQLFA--------------------------------MMEECH 405

Query: 171 N--PNVVSYTTMICGLLKRERFEDALKLFQEM---PHRNVVSWNAMIGGYSQTGRNEEA 224
              P+   Y  M+  L +  R E+AL L + M   PH  V  W A++G     G  + A
Sbjct: 406 GVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGV--WGALLGACRIHGNPDMA 462


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 169/457 (36%), Positives = 257/457 (56%), Gaps = 36/457 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD++   ++VS T++I  +A+     EAI L   ML    +P+ FTF S++ ++ A  D
Sbjct: 108 VFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYAD 167

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+HA A K G   +V+VGSA+LD+Y +   ++ AT VF+                
Sbjct: 168 SGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFD---------------- 211

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          ++  +N VSWNA+I G+++ G  E A+  F EMLR G    H T 
Sbjct: 212 ---------------KLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTY 256

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                + A + AL  GK  HA  +K   KL  FVGN+L+  YAK GSM D+  VFD++  
Sbjct: 257 SSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDN 316

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++VTWN+++  +AQ G G+EA+  FE MR +G+  N +T L +L AC+H GLV++G  Y
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRY 376

Query: 364 FSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F   K  D   L+PE  HY  +V LL R+G    A  F++ +P +P    W ALL  C++
Sbjct: 377 FEMMKEYD---LEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRM 433

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ++G+FAA  +  LDP+D    V+L N  +  G+WD  + +R  MK  G+ + P CS
Sbjct: 434 HKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACS 493

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+E+++ VH+FV  D  H   +EIY +    +++IR+
Sbjct: 494 WVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRK 530


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/463 (34%), Positives = 273/463 (58%), Gaps = 15/463 (3%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           KF     +FD++P+ ++ S   ++  + +    + A  LF RM   +I     ++ +++ 
Sbjct: 10  KFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI----VSWNAMLS 65

Query: 117 SSTALEDLNLGKQL-HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
                  ++  +++ +    K G+  N      +L  Y++   IE+A R+FE   +  +V
Sbjct: 66  GYAQNGFVDEAREIFYKMPLKNGISWN-----GLLAAYVQNGRIEDAKRLFESKMDWTLV 120

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+  ++ G +++ R      LF  MP R+ +SW+AMI GYSQ G +EEA++ F+EM R+ 
Sbjct: 121 SWNCLMGGFVRKRR-----NLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDC 175

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
              N S+  CA+   +NIAAL +G+  H   VK   +   +VGN+L++ Y KCGS++++ 
Sbjct: 176 ERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEAR 235

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
             F ++ E+++V+WN +I GYA++G GEEA+  FE M+  GIRP+  T++ +L AC+H G
Sbjct: 236 DAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAG 295

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           LV++G  YF     +     K  HY CMVDLL R+G+ +EA+  + ++PF+P    W AL
Sbjct: 296 LVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGAL 355

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           LG  +IH N ELGE AA+ I  ++P +   Y++LS   + +G+W +   +R EM+ KG+ 
Sbjct: 356 LGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVK 415

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +VPG SW+E+++K+H F  GD +H   D+IY  L     ++++
Sbjct: 416 KVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQ 458



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 150/329 (45%), Gaps = 25/329 (7%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           Y++    + A  +F+     ++ S+  M+ G ++    + A  LF+ MP R++VSWNAM+
Sbjct: 5   YLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAML 64

Query: 213 GGYSQTGRNEEAVNLFIEM-LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
            GY+Q G  +EA  +F +M L+ G+  N             +AA             F  
Sbjct: 65  SGYAQNGFVDEAREIFYKMPLKNGISWN-----------GLLAAYVQNGRIEDAKRLFES 113

Query: 272 KLDVFVGNSLISFYAKCGS-MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
           K+D     +L+S+    G  +     +FD + +R+ ++W+A+I GY+QNG  EEA+ FF 
Sbjct: 114 KMDW----TLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFV 169

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSR 389
            M+ +  R N  +    L  C++   +E G       +L   G     +    ++ +  +
Sbjct: 170 EMQRDCERLNRSSFTCALSTCSNIAALELGRQL--HCRLVKAGYQTGWYVGNALLAMYCK 227

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYV 447
            G   EA++   ++  +  +  W  ++ G   H   E  L  F   +   + P+D +   
Sbjct: 228 CGSIDEARDAFQEI-LEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVS 286

Query: 448 MLSNALSVAGKWDNVSNIRREM-KEKGMT 475
           +L+ A S AG  D  S     M ++ G+T
Sbjct: 287 VLA-ACSHAGLVDQGSEYFYSMNRDYGIT 314


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 268/481 (55%), Gaps = 4/481 (0%)

Query: 40  ETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           E PA +  +      S   +    VFD +   N     T+I  ++     EEA+ L+  M
Sbjct: 50  EIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHM 109

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
           L  ++  + +TF  ++ + +++      +Q+HA   K+G  S ++  +++L++Y K   I
Sbjct: 110 LYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDI 169

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
           + A  +F+     + VS+ +MI G  K    E A ++F  MP RN++SW +MI G    G
Sbjct: 170 KSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAG 229

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
           + +EA+NLF  M   G+  ++  L   + A A++  L  GK  HA   K   ++D  +G 
Sbjct: 230 KPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGC 289

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
            LI  YAKCG +E+++ VF K+ E+ +  W A+I GYA +GRG EA+E+F +M+  G+ P
Sbjct: 290 VLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEP 349

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAK 397
           N +T  G+L AC+H GLV +    F    +E     KP  EHY CMVDLL R+G  KEA+
Sbjct: 350 NQMTFTGILTACSHAGLVHEAKLLFE--SMERIHGFKPSIEHYGCMVDLLGRAGLLKEAE 407

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           E + ++P  P    W ALL  C IH N+ELG+   + ++ +DP     Y+ L++  + AG
Sbjct: 408 ELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAG 467

Query: 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +W+  + +RR+MKE+G++++PGCS I +    H F+ GD +H    EI  +L    E++R
Sbjct: 468 EWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLR 527

Query: 518 E 518
           E
Sbjct: 528 E 528


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/464 (38%), Positives = 261/464 (56%), Gaps = 39/464 (8%)

Query: 49   VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
            + CGS  D +    +VF  +   NV+S T +IG FA Q    +A  LF +M     +P +
Sbjct: 633  IRCGSLQDAY----EVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVK 688

Query: 109  FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             TF S++ +  +   L+ GK++ A     G + +  VG+A++  Y K  S+         
Sbjct: 689  STFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMT-------- 740

Query: 169  THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                   DA K+F +MP+R+++SWN MI GY+Q G    A+   
Sbjct: 741  -----------------------DARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFA 777

Query: 229  IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             +M  +G+V N  +    + A ++ +AL  GK  HA  VK   + DV VG +LIS YAKC
Sbjct: 778  YQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKC 837

Query: 289  GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            GS+E++  VFD  TE+N+VTWNA+I  YAQ+G   +A++FF  M   GI+P+G T   +L
Sbjct: 838  GSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSIL 897

Query: 349  WACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
             ACNH+GLV +G   FS   LE    L P  EHY C+V LL R+GRF+EA+  +  +PF 
Sbjct: 898  SACNHSGLVMEGNRIFS--SLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFP 955

Query: 407  PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
            P    W+ LLG C+IH NV L E AA   L L+  + + YV+LSN  + AG+WD+V+ IR
Sbjct: 956  PDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIR 1015

Query: 467  REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
            R M+ +G+ + PG SWIE+ + +H F+  DR+H    EIY  L+
Sbjct: 1016 RVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELK 1059



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 189/373 (50%), Gaps = 39/373 (10%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS          VF+     +++S  ++I   A+   YE A  LF  M    + P + T
Sbjct: 534 CGS----IMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKIT 589

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F SV+      E L LG+Q+H    + GLQ +V +G+A++++YI+               
Sbjct: 590 FASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIR--------------- 634

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                      CG L     +DA ++F  + HRNV+SW AMIGG++  G + +A  LF +
Sbjct: 635 -----------CGSL-----QDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQ 678

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  +G  P  ST    + A  + A L  GK   A  +    +LD  VGN+LIS Y+K GS
Sbjct: 679 MQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGS 738

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M D+  VFDK+  R+I++WN +I GYAQNG G  A++F  +M+  G+  N  + + +L A
Sbjct: 739 MTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNA 798

Query: 351 CNHTGLVEKGYSYFSQ-AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C+    +E+G    ++  K +  G ++    A ++ + ++ G  +EA+E ++D   +  +
Sbjct: 799 CSSFSALEEGKRVHAEIVKRKMQGDVRVG--AALISMYAKCGSLEEAQE-VFDNFTEKNV 855

Query: 410 GFWKALLGGCQIH 422
             W A++     H
Sbjct: 856 VTWNAMINAYAQH 868



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 219/451 (48%), Gaps = 56/451 (12%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I +L  C S   L    K+HS     +IE   A  Q+   P ++   ++   + +   S 
Sbjct: 187 ISILTACCSPAELEYGKKIHS----KIIE---AGYQR--DPRVQNSLLNMYGKCEDLPSA 237

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            QVF  +   +VVS  T++G +A++ + EE I LF +M    I P + T+ +++ + T  
Sbjct: 238 RQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTP 297

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L+ GK++H  A   GL S++ VG+A+  ++++   +  A +  E              
Sbjct: 298 SMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALE-------------- 343

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                   F D          R+VV +NA+I   +Q G  EEA   + +M  +G+V N +
Sbjct: 344 -------AFAD----------RDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRT 386

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A +   ALG G+  H+   +     DV +GNSLIS YA+CG +  +  +F+ +
Sbjct: 387 TYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTM 446

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +R++++WNA+I GYA+     EA++ +++M+  G++P  VT L LL AC ++       
Sbjct: 447 PKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNS------- 499

Query: 362 SYFSQAKL--ED---PGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           S +S  K+  ED    G+    H A  ++++  R G   EA+  +++      I  W ++
Sbjct: 500 SAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQN-VFEGTRARDIISWNSM 558

Query: 416 LGGCQIHSNVELGE--FAARRILALDPEDVS 444
           + G   H + E     F   +   L+P+ ++
Sbjct: 559 IAGHAQHGSYEAAYKLFLEMKKEGLEPDKIT 589



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 194/417 (46%), Gaps = 42/417 (10%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I LL    +   L++  ++H LA N  + +       L T  +R     CG      +  
Sbjct: 288 INLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVR-----CGD----VAGA 338

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            Q  +   D +VV    +I   A+  HYEEA   + +M    +  +  T+ SV+ + +  
Sbjct: 339 KQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTS 398

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + L  G+ +H+  ++VG  S+V +G++++ +Y +                          
Sbjct: 399 KALGAGELIHSHISEVGHSSDVQIGNSLISMYAR-------------------------- 432

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG L R R     +LF  MP R+++SWNA+I GY++     EA+ L+ +M  EG+ P   
Sbjct: 433 CGDLPRAR-----ELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRV 487

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A  N +A   GK  H   ++   K +  + N+L++ Y +CGS+ ++  VF+  
Sbjct: 488 TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGT 547

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             R+I++WN++I G+AQ+G  E A + F  M+  G+ P+ +T   +L  C +   +E G 
Sbjct: 548 RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR 607

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                  +E    L       ++++  R G  ++A E  + L     +  W A++GG
Sbjct: 608 Q-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMIGG 662



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 173/373 (46%), Gaps = 43/373 (11%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V C S SD     HQVF ++P  +V+S  ++I  +A+Q   ++A  LF  M      PS+
Sbjct: 128 VKCRSVSD----AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSK 183

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T+ S++ +  +  +L  GK++H+   + G Q +  V +++L++Y K   +  A +VF  
Sbjct: 184 ITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSG 243

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
            +  +VVSY T                               M+G Y+Q    EE + LF
Sbjct: 244 IYRRDVVSYNT-------------------------------MLGLYAQKAYVEECIGLF 272

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M  EG+ P+  T    + A    + L  GK  H  AV      D+ VG +L + + +C
Sbjct: 273 GQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRC 332

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +  +    +   +R++V +NA+I   AQ+G  EEA E + +MR +G+  N  T L +L
Sbjct: 333 GDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVL 392

Query: 349 WACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            AC+ +  +  G   +S+ S+        +       ++ + +R G    A+E    +P 
Sbjct: 393 NACSTSKALGAGELIHSHISEVGHSSDVQIGNS----LISMYARCGDLPRARELFNTMPK 448

Query: 406 DPGIGFWKALLGG 418
              I  W A++ G
Sbjct: 449 RDLIS-WNAIIAG 460



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 126/259 (48%), Gaps = 34/259 (13%)

Query: 105 RPSEF---TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
           RP+E     +  ++ + T    L   K++HA   + G+  ++F+ + ++++Y+K  S+  
Sbjct: 76  RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVS- 134

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
                                         DA ++F +MP R+V+SWN++I  Y+Q G  
Sbjct: 135 ------------------------------DAHQVFLKMPRRDVISWNSLISCYAQQGFK 164

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           ++A  LF EM   G +P+  T    + A  + A L  GK  H+  ++   + D  V NSL
Sbjct: 165 KKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSL 224

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           ++ Y KC  +  +  VF  +  R++V++N ++  YAQ    EE I  F +M   GI P+ 
Sbjct: 225 LNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDK 284

Query: 342 VTLLGLLWACNHTGLVEKG 360
           VT + LL A     ++++G
Sbjct: 285 VTYINLLDAFTTPSMLDEG 303



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 122/257 (47%), Gaps = 45/257 (17%)

Query: 4   LLCICRSSLSLNKLSKL--HSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           +L  C SS  L++  K+  H L   Y ++T            +    +S  S+S   +  
Sbjct: 694 ILKACMSSACLDEGKKVIAHILNSGYELDT-----------GVGNALISAYSKSGSMTDA 742

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VFD++P+ +++S   +I  +A+      A+    +M    +  ++F+F S++ + ++ 
Sbjct: 743 RKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSF 802

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  GK++HA   K  +Q +V VG+A++ +Y K  S+EEA  VF++    NV       
Sbjct: 803 SALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNV------- 855

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                                   V+WNAMI  Y+Q G   +A++ F  M +EG+ P+ S
Sbjct: 856 ------------------------VTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGS 891

Query: 242 TLPCAIIAAANIAALGM 258
           T   +I++A N + L M
Sbjct: 892 TFT-SILSACNHSGLVM 907



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
           +L   K  HA  V+     D+F+ N LI+ Y KC S+ D+  VF K+  R++++WN++I 
Sbjct: 97  SLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLIS 156

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
            YAQ G  ++A + FE M+  G  P+ +T + +L AC     +E G    S+  +E    
Sbjct: 157 CYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKI-IEAGYQ 215

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAA 432
             P     ++++  +      A++    + +   +  +  +LG     + VE  +G F  
Sbjct: 216 RDPRVQNSLLNMYGKCEDLPSARQVFSGI-YRRDVVSYNTMLGLYAQKAYVEECIGLFGQ 274

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
                + P+ V +Y+ L +A +     D    I +    +G+ 
Sbjct: 275 MSSEGIPPDKV-TYINLLDAFTTPSMLDEGKRIHKLAVNEGLN 316


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/454 (37%), Positives = 262/454 (57%), Gaps = 37/454 (8%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSS 118
           S  ++FDE+P  +VVS   +I  + +  +Y+EA+ LF  M+++ N+RP E T  +V+ + 
Sbjct: 173 SAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSAC 232

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
              + + LG+ +H+W    G  SN+ + +A++DLY K   +E A  +F+   N       
Sbjct: 233 AQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWN------- 285

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                                   ++V+SWN +IGGY+     +EA+ LF EMLR G  P
Sbjct: 286 ------------------------KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 321

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN---SLISFYAKCGSMEDSL 295
           N  T+   + A A++ A+ +G+  H    K L  +   V +   SLI  YAKCG ++ + 
Sbjct: 322 NDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQ 381

Query: 296 LVFDK-LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
            VFD  ++ R++ TWNA+I G+A +GR   A + F RMR+NGI P+ +T +GLL AC+H+
Sbjct: 382 QVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHS 441

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G+++ G + F           K EHY CM+DLL  SG FKEA+E +  +P +P    W +
Sbjct: 442 GMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCS 501

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LL  C+IH N+ELGE  A++++ ++P +  SYV+LSN  + AG+W+ V+ IR  + +KGM
Sbjct: 502 LLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGM 561

Query: 475 -TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
             +VPGCS IEI S VH F+ GD+ H  N EIY 
Sbjct: 562 KKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYG 595



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/419 (29%), Positives = 219/419 (52%), Gaps = 6/419 (1%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D F     VFD + + N++   T+    A       A+ L+  M+ L + P  +TF  ++
Sbjct: 37  DGFPYAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLL 96

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            S    +    G+Q+H    K+G   +++V ++++ +Y +   +E+A +VF+ + + +VV
Sbjct: 97  KSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVV 156

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE-MLRE 234
           SYT +I G + R   E A KLF E+P ++VVSWNAMI GY +TG  +EA+ LF E M+  
Sbjct: 157 SYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMT 216

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
            + P+ ST+   + A A   ++ +G+  H+         ++ + N+LI  Y+K G +E +
Sbjct: 217 NVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETA 276

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             +FD L  +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H 
Sbjct: 277 CELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 336

Query: 355 GLVEKG--YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           G ++ G     +   KL+            ++D+ ++ G    A++       +  +  W
Sbjct: 337 GAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTW 396

Query: 413 KALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
            A++ G  +H  +N     F+  R+  ++P+D+ ++V L +A S +G  D   NI R M
Sbjct: 397 NAMISGFAMHGRANAAFDIFSRMRMNGIEPDDI-TFVGLLSACSHSGMLDLGRNIFRSM 454


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 263/456 (57%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+ + + NVV+ T++I   A     EE   +F +M    +    F   +++       
Sbjct: 181 RVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGET 240

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           ++++G+QLH +  K G+ S+V VG+A L +Y K    E+A+  FE     +V+S+TTMI 
Sbjct: 241 NISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMIT 300

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                   E A   F  MP RNV+SWNAM+G Y Q    EE + L+I MLR+ + P+  T
Sbjct: 301 SFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWIT 360

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               I A + +A   +G    + AVK     DV V NS I+ Y++CG +E++  +FD + 
Sbjct: 361 FVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQ 420

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+N+++WN+++ GYAQNG G + IE F+ M + G +P+ +T + +L  C+H+GLV++   
Sbjct: 421 EKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKY 480

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F+    +    +  EH+ CMVDL  R+G  K A + +  +PF P    W ALL  C+IH
Sbjct: 481 HFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRIH 540

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            + E+ E A + +L L+ E+  SY++L+N  S  G+ + VS +R+ MKEK + + PGCSW
Sbjct: 541 HDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQKDPGCSW 600

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           IE+ ++VHVF   D +H    +IY  L    ++I++
Sbjct: 601 IEVCNRVHVFTANDTSHPQVKDIYKALEDIVKKIKD 636



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 156/328 (47%), Gaps = 32/328 (9%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           + +  QLH  + K G  +N  + ++I+D+YIK  +I  A +VF     P++ S+  MI G
Sbjct: 9   IRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYG 68

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K      A+  F++MP R+ VSWN +I  +S  G + +++  F+EM  +G  PN  T 
Sbjct: 69  YSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTY 128

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A ANI     GK  HA  V+    LDV VGN L+  YAKCG ++ S  VF+ L E
Sbjct: 129 ASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLRE 188

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN----------- 352
            N+VTW ++I G A  G  EE  + F +MR + +  +   L  +L  C            
Sbjct: 189 HNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQL 248

Query: 353 HTGLVEKGYSY-----------------FSQAKLEDPGMLKPE--HYACMVDLLSRSGRF 393
           H   V+ G +                  F +A L    M   +   +  M+   S SG  
Sbjct: 249 HGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNV 308

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGG-CQ 420
           + A+++   +P +  +  W A+LG  CQ
Sbjct: 309 ERARDYFNRMP-ERNVISWNAMLGAYCQ 335



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 192/438 (43%), Gaps = 71/438 (16%)

Query: 58  FSSVHQV------FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           +S +H++      F ++P+ + VS  TII  F+    + +++  F  M +   +P+  T+
Sbjct: 69  YSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTY 128

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            SV+ +   + D   GK LHA   +V    +V VG+ ++D+Y K   I+ + RVF     
Sbjct: 129 ASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLRE 188

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            NVV++T++I G+                               +  G  EE  ++F +M
Sbjct: 189 HNVVTWTSLISGI-------------------------------AHFGSQEEVYDIFYQM 217

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            ++ ++ ++  L   +        + +G+  H   VK      V VGN+ +S YAKCG  
Sbjct: 218 RKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDF 277

Query: 292 EDSLLVFD-------------------------------KLTERNIVTWNAVICGYAQNG 320
           E + L F+                               ++ ERN+++WNA++  Y QN 
Sbjct: 278 EKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNS 337

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
             EE ++ +  M    +RP+ +T + ++ AC+   + + G    SQA     G       
Sbjct: 338 FWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGS-DVSVV 396

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG-CQIHSNVELGEFAARRILALD 439
              + L SR GR +EA+  L+D   +  +  W +++GG  Q    +++ E     ++A  
Sbjct: 397 NSAITLYSRCGRIEEAQN-LFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGC 455

Query: 440 PEDVSSYVMLSNALSVAG 457
             D  +Y+ + +  S +G
Sbjct: 456 KPDHITYIAILSGCSHSG 473



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 39/273 (14%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  ++  S S         F+ +P+ NV+S   ++G + +   +EE + L+  ML   +R
Sbjct: 296 TTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVR 355

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P   TF ++I + + L    LG Q+ + A KVGL S+V V ++ + LY +   IEEA  +
Sbjct: 356 PDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNL 415

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+     N++S                               WN+++GGY+Q G   + +
Sbjct: 416 FDSIQEKNLIS-------------------------------WNSIMGGYAQNGEGMKVI 444

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV-KFLG---KLDVFVGNSL 281
            +F  ML  G  P+H T   AI++  + + L     +H  ++ K  G    L+ FV   +
Sbjct: 445 EIFQNMLMAGCKPDHITY-IAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFV--CM 501

Query: 282 ISFYAKCGSMEDSLLVFDKLTER-NIVTWNAVI 313
           +  + + G ++ +L + D++  + N   W A++
Sbjct: 502 VDLFGRAGLLKLALDMIDQMPFKPNASIWGALL 534



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 45/85 (52%)

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
           +A +++  + +    H  + K+    +  + NS+I  Y KC ++  +  VF ++ + ++ 
Sbjct: 1   MACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLF 60

Query: 308 TWNAVICGYAQNGRGEEAIEFFERM 332
           +WN +I GY++      AI+ F +M
Sbjct: 61  SWNCMIYGYSKLHEMGRAIDTFRQM 85


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 165/459 (35%), Positives = 270/459 (58%), Gaps = 33/459 (7%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++FDE+P  +VVS   +I  +A+   Y+EA+ LF+ M+ ++++P E T  +V+ + T  
Sbjct: 164 QKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHS 223

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            ++ LG+Q+H+W    G  SN+ + +A++DLY K                          
Sbjct: 224 GNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSK-------------------------- 257

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG ++R     A  LF+ + +++V+SWN +IGGY+    ++EA+ +F EML+ G  PN  
Sbjct: 258 CGEMER-----AHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDV 312

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFD 299
           T+   + A A++ A+ +G+  H    K L  +  +  +  SLI  YAKCG++E +  VFD
Sbjct: 313 TMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFD 372

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            +  +++ + NA+I G+A +GR + A +   RM+ +GI P+ +T +GLL AC+H GL + 
Sbjct: 373 TILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDL 432

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G   F    L+     K EHY CM+DLL RSG FKEA+E +  +  +P    W +LL  C
Sbjct: 433 GRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKAC 492

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +IH N+ELGE  A++++ ++P++  SYV+LSN  + + +WD+V+ +R  + +KG+ +VPG
Sbjct: 493 KIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPG 552

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           CS IEI S VH F+ GD+ H  N EIY +L      + E
Sbjct: 553 CSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAE 591



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 215/409 (52%), Gaps = 5/409 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF  + + N +S  T+I   A       A+ L+  M+ L + P+ +TF  +  S    + 
Sbjct: 34  VFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKA 93

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              GKQ+HA   K GL  ++ V ++++ +Y +   +E+A +VF+ + + +VVSYT MI G
Sbjct: 94  AQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITG 153

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R   + A K+F E+P ++VVSWNAMI GY++ GR +EA+ LF EM++  + P+ ST+
Sbjct: 154 YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTM 213

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +    +   + +G+  H+         ++ + N+LI  Y+KCG ME +  +F+ L  
Sbjct: 214 ATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQY 273

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN +I GYA     +EA+  F+ M   G  PN VT+L +L AC H G ++ G   
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWI 333

Query: 364 FSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                 +  G++        ++D+ ++ G  + A + ++D   +  +    A++ G  +H
Sbjct: 334 HVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQ-VFDTILNKSLSSCNAMIFGFAMH 392

Query: 423 SNVELGEFAARRIL--ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
              +       R+    ++P+D+ ++V L +A S AG  D    I + M
Sbjct: 393 GRADAAFDLLSRMKKDGIEPDDI-TFVGLLSACSHAGLSDLGRKIFKSM 440



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 138/316 (43%), Gaps = 57/316 (18%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+ +   N +SWN MI G++ +     A+NL++ M+  GL PN  T P    + A 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------- 304
             A   GK  HA  +K+   +D+ V  SLIS YA+ G +ED+  VFD  + R        
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 305 -----------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                  ++V+WNA+I GYA+ GR +EA+E F  M    ++P+ 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 342 VTLLGLLWACNHTGLVEKG---------YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
            T+  +L  C H+G VE G         + + S  KL +           ++DL S+ G 
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVN----------ALIDLYSKCGE 260

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQI--HSNVELGEFAARRILALDPEDVSSYVMLS 450
            + A      L +   I  W  L+GG     H    L  F     L   P DV+   +L 
Sbjct: 261 MERAHGLFEGLQYKDVIS-WNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILP 319

Query: 451 NALSVA----GKWDNV 462
               +     G+W +V
Sbjct: 320 ACAHLGAIDIGRWIHV 335



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 95/185 (51%), Gaps = 6/185 (3%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+  +    H +F+ +   +V+S  T+IG +A  +H++EA+ +F  ML L   P++ T  
Sbjct: 256 SKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTML 315

Query: 113 SVIPSSTALEDLNLGKQLHAWATK--VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           S++P+   L  +++G+ +H +  K   G+ +N  + ++++D+Y K  +IE A +VF+   
Sbjct: 316 SILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTIL 375

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVN 226
           N ++ S   MI G     R + A  L   M    +    +++  ++   S  G ++    
Sbjct: 376 NKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRK 435

Query: 227 LFIEM 231
           +F  M
Sbjct: 436 IFKSM 440


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 167/458 (36%), Positives = 270/458 (58%), Gaps = 4/458 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF +V   N    T +I  +A Q    E+   ++RM    + P  FTF ++  +  A  +
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 124 LNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           ++LGKQ+HA    +G   S+++VG++++DLY+K   +  A +VF++    +VVS+T +I 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
              K    E A  LF ++P +++V+W AM+ GY+Q GR +EA+  F +M   G+  +  T
Sbjct: 218 AYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVT 277

Query: 243 LPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           L   I A A + A+         A +  F    +V VG++LI  Y+KCGS +++  VF+ 
Sbjct: 278 LAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEV 337

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN+ +++++I GYA +GR   A++ F  M    IRPN VT +G+L AC+H GLVE+G
Sbjct: 338 MKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQG 397

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              F++ +        P+HYACMVDLL R+G  +EA + +  +P +P  G W ALLG C+
Sbjct: 398 RQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACR 457

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH N ++ + AA  +  L+P  + +Y++LSN  + AG+W+ VS +R+ ++EKG  + PGC
Sbjct: 458 IHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGC 517

Query: 481 SWIEIKS-KVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           SW E K+ ++H F  GD  H  + EI   L+   E++R
Sbjct: 518 SWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLR 555



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 32/197 (16%)

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
           L +F ++ + N   W AMI GY+  G   E+ N +  M R+G+ P   T      A    
Sbjct: 96  LLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAA 155

Query: 254 AALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT---- 308
             + +GK  HA  +   G   D++VGNS+I  Y KCG +  +  VFD+++ER++V+    
Sbjct: 156 LNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTEL 215

Query: 309 ---------------------------WNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                      W A++ GYAQNGR +EA+E+F++M+  G+  + 
Sbjct: 216 IVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDE 275

Query: 342 VTLLGLLWACNHTGLVE 358
           VTL G++ AC   G V+
Sbjct: 276 VTLAGVISACAQLGAVK 292



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 7/195 (3%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S   +FD++P  ++V+ T ++  +A+    +EA+  F +M  + +   E T   VI +  
Sbjct: 227 SASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACA 286

Query: 120 ALEDLNLGKQLHAWATKVGL--QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            L  +     +   A + G     NV VGSA++D+Y K  S +EA +VFE     NV SY
Sbjct: 287 QLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSY 346

Query: 178 TTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           ++MI G     R   AL+LF +M       N V++  ++   S  G  E+   LF +M +
Sbjct: 347 SSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEK 406

Query: 234 -EGLVPNHSTLPCAI 247
             G+ P+     C +
Sbjct: 407 FFGVAPSPDHYACMV 421



 Score = 46.2 bits (108), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 17/139 (12%)

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           ++ L K+DV +G+               LLVF ++   N   W A+I GYA  G   E+ 
Sbjct: 81  IRMLTKVDVPMGSY-------------PLLVFGQVNYPNPFLWTAMIRGYALQGLLSEST 127

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMV 384
            F+ RMR +G+ P   T   L  AC     ++ G    +Q  L   G    + Y    M+
Sbjct: 128 NFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTIL--IGGFASDLYVGNSMI 185

Query: 385 DLLSRSGRFKEAKEFLYDL 403
           DL  + G    A++   ++
Sbjct: 186 DLYVKCGFLGCARKVFDEM 204



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 35/164 (21%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  + +    +VF+ + + NV S +++I  +A       A+ LF  ML   IRP++ T
Sbjct: 325 CGSPDEAY----KVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVT 380

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  ++ + +    +  G+QL A   K       F G A                      
Sbjct: 381 FIGILSACSHAGLVEQGRQLFAKMEK-------FFGVA---------------------- 411

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIG 213
            P+   Y  M+  L +    E+AL L + MP   N   W A++G
Sbjct: 412 -PSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLG 454


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 165/459 (35%), Positives = 267/459 (58%), Gaps = 4/459 (0%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALED 123
           F+++ + ++V+  ++I  + ++ +   A+ +FS+ML  + + P  FT  SV+ +   LE 
Sbjct: 235 FEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEK 294

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED--THNPNVVSYTTMI 181
           L +G+Q+H+     G   +  V +A++ +Y +   +E A R+ E   T +  +  +T ++
Sbjct: 295 LCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G +K     +A  +F  +  R+VV+W AMI GY Q G   EA+NLF  M+ E   PN  
Sbjct: 355 DGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSY 414

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   +  A+++A+LG GK  H  AVK      V V N+LI+ YAK GS+  +   FD +
Sbjct: 415 TLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLI 474

Query: 302 -TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
             ER+ V+W ++I   AQ+G  EEA+E FE M + G+RP+ +T +G+  AC H GLV +G
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQG 534

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             YF   K  D  +    HYACMVDL  R+G  +EA+EF+  +P +P +  W +LL  C+
Sbjct: 535 RQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACR 594

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           ++ N++LG+ AA R+L L+PE+  +Y  L+N  S  GKW+  + IR+ MK+  + +  G 
Sbjct: 595 VYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGF 654

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           SWIE+K KVH F   D  H   +EIY  ++   ++I++ 
Sbjct: 655 SWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKM 693



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 166/320 (51%), Gaps = 34/320 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           + FD +P  + VS TT+I  +     Y +AI +   M+   I PS+FT  +V+ S  A  
Sbjct: 101 EFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATR 160

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GK++H++  K+GL+ NV V +++L++Y K      A  VF+     ++ S+  MI 
Sbjct: 161 CLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIA 220

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHS 241
             ++  + + A+  F++M  R++V+WN+MI GY+Q G +  A+++F +MLR+ ++ P+  
Sbjct: 221 LHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRF 280

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME--------- 292
           TL   + A AN+  L +G+  H+  V     +   V N+LIS Y++CG +E         
Sbjct: 281 TLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQR 340

Query: 293 ----------DSLL--------------VFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
                      +LL              +FD L +R++V W A+I GY Q+G   EAI  
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINL 400

Query: 329 FERMRINGIRPNGVTLLGLL 348
           F  M     RPN  TL  +L
Sbjct: 401 FRSMVGEEQRPNSYTLAAML 420



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 65/357 (18%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +H    K GL  +V++ + ++++Y K      A ++F++       S+ T++    KR  
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            + + + F  +P R+ VSW  MI GY   G+  +A+ +  EM+REG+ P+  TL   + +
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC--------------------- 288
            A    L  GK  H+  VK   + +V V NSL++ YAKC                     
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 289 ----------GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGI 337
                     G M+ ++  F+++ ER+IVTWN++I GY Q G    A++ F +M R + +
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSML 275

Query: 338 RPNGVTLLGLLWACN-----------HTGLVEKGY-----------SYFSQAK------- 368
            P+  TL  +L AC            H+ +V  G+           S +S+         
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 369 -LEDPGM--LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            +E  G   LK E +  ++D   + G   EAK  ++D   D  +  W A++ G + H
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKN-IFDSLKDRDVVAWTAMIVGYEQH 391



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 147/340 (43%), Gaps = 73/340 (21%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD + D +VV+ T +I  + +   Y EAI LF  M+    RP+ +T  +++  +++L  
Sbjct: 369 IFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLAS 428

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVVSYTTMIC 182
           L  GKQ+H  A K G   +V V +A++ +Y K  SI  A+R F+      + VS+T+MI 
Sbjct: 429 LGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMII 488

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            L +    E+AL+LF+                                ML EGL P+H T
Sbjct: 489 ALAQHGHAEEALELFE-------------------------------TMLMEGLRPDHIT 517

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
                 A  +   +  G+ +       +  +D  +    +S YA                
Sbjct: 518 YVGVFSACTHAGLVNQGRQY----FDMMKDVDKIIPT--LSHYA---------------- 555

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
                    ++  + + G  +EA EF E+M    I P+ VT   LL AC     ++ G  
Sbjct: 556 --------CMVDLFGRAGLLQEAQEFIEKM---PIEPDVVTWGSLLSACRVYKNIDLG-- 602

Query: 363 YFSQAKLEDPGMLKPEH---YACMVDLLSRSGRFKEAKEF 399
              +   E   +L+PE+   Y+ + +L S  G+++EA + 
Sbjct: 603 ---KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKI 639


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 174/518 (33%), Positives = 289/518 (55%), Gaps = 44/518 (8%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C    +L +  ++H+    ++I+T+      L    +RT  +    + D      +
Sbjct: 57  LLNACLDKRALREGQRVHA----HMIKTRY-----LPATYLRTRLLIFYGKCDCLEDARK 107

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           V DE+P+ NVVS T +I R+++  H  EA+ +F+ M+  + +P+EFTF +V+ S      
Sbjct: 108 VLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASG 167

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGKQ+H    K    S++FVGS++LD+Y K   IEEA  +FE              C 
Sbjct: 168 LALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFE--------------C- 212

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                           +P R+VVS  A+I GY+Q G +EEA+ +F  +  EG+ PN+ T 
Sbjct: 213 ----------------LPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTY 256

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A + +A L  GK  H   ++        + NSLI  Y+KCG++  +  +FD + E
Sbjct: 257 ASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPE 316

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKGYS 362
           R  ++WNA++ GY+++G G E +E F  MR    ++P+ VTLL +L  C+H  + + G S
Sbjct: 317 RTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLS 376

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
            +      + G +KP  EHY C+VD+L R+GR  EA EF+  +P  P  G   +LLG C+
Sbjct: 377 IYDGMVAGEYG-IKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 435

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H +V++GE+   R++ ++PE+  +YV+LSN  + AG+W++V+N+R  M +K +T+ PG 
Sbjct: 436 VHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGR 495

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           SWI+ +  +H F   DR H   +E+ A ++  + ++++
Sbjct: 496 SWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 533



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 151/282 (53%), Gaps = 12/282 (4%)

Query: 148 AILDLYIKLSSIEEATRV----FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
           A+L+  +   ++ E  RV     +  + P     T ++    K +  EDA K+  EMP +
Sbjct: 56  ALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 115

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           NVVSW AMI  YSQTG + EA+++F EM+R    PN  T    + +    + L +GK  H
Sbjct: 116 NVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIH 175

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
              VK+     +FVG+SL+  YAK G +E++  +F+ L ER++V+  A+I GYAQ G  E
Sbjct: 176 GLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDE 235

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHY 380
           EA+E F+R++  G+RPN VT   LL A +   L++ G   + +  + +L    +L+    
Sbjct: 236 EALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS-- 293

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
             ++D+ S+ G    A+    ++P    I  W A+L G   H
Sbjct: 294 --LIDMYSKCGNLSYAQRLFDNMPERTAIS-WNAMLVGYSKH 332



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 122/264 (46%), Gaps = 25/264 (9%)

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           GR +EA+   +EM+  G           + A  +  AL  G+  HA  +K       ++ 
Sbjct: 33  GRLQEAL---LEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLR 89

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF-ERMRINGI 337
             L+ FY KC  +ED+  V D++ E+N+V+W A+I  Y+Q G   EA+  F E MR +G 
Sbjct: 90  TRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDG- 148

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-------ACMVDLLSRS 390
           +PN  T   +L +C    +   G +   Q      G++   +Y       + ++D+ +++
Sbjct: 149 KPNEFTFATVLTSC----IRASGLALGKQIH----GLIVKWNYDSHIFVGSSLLDMYAKA 200

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR-RILALDPEDVSSYVML 449
           G+ +EA+E    LP    +     + G  Q+  + E  E   R +   + P  V+   +L
Sbjct: 201 GQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLL 260

Query: 450 SN----ALSVAGKWDNVSNIRREM 469
           +     AL   GK  +   +RRE+
Sbjct: 261 TALSGLALLDHGKQAHCHVLRREL 284


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 264/474 (55%), Gaps = 31/474 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           ++T  V   ++       H+VFD++PD NVVS T II  +     + EAI +F R+L +N
Sbjct: 149 VKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMN 208

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           + P  FT   V+ + T L DLN G+ +H    ++G+  NVFVG++++D+Y K  ++E+A 
Sbjct: 209 LAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKAR 268

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            VF+                                MP +++VSW AMI GY+  G  +E
Sbjct: 269 SVFDG-------------------------------MPEKDIVSWGAMIQGYALNGLPKE 297

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A++LF++M RE + P+  T+   + A A + AL +G+       +     +  +G +LI 
Sbjct: 298 AIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALID 357

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCGSM  +  VF  + E++ V WNA+I G A NG  + +   F ++   GI+P+G T
Sbjct: 358 LYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNT 417

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            +GLL  C H GLV++G  YF+            EHY CMVDLL R+G   EA + + ++
Sbjct: 418 FIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM 477

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P +     W ALLG C+IH + +L E A ++++ L+P +  +YV+LSN  S   KWD  +
Sbjct: 478 PMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAA 537

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +R  M EK + + PGCSWIE+   VH F+ GD+ H ++++IYA L   T++++
Sbjct: 538 KVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMK 591



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/399 (29%), Positives = 195/399 (48%), Gaps = 36/399 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F ++   N+    T+I        +++AI  +  M      P+ FTF  V+ +   L D
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LG ++H    K G   +VFV ++++ LY K                          CG
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAK--------------------------CG 161

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            L     EDA K+F ++P +NVVSW A+I GY   G+  EA+++F  +L   L P+  T+
Sbjct: 162 YL-----EDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTI 216

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A   +  L  G+  H C ++     +VFVG SL+  YAKCG+ME +  VFD + E
Sbjct: 217 VRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPE 276

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           ++IV+W A+I GYA NG  +EAI+ F +M+   ++P+  T++G+L AC   G +E G  +
Sbjct: 277 KDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELG-EW 335

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            S     +  +  P     ++DL ++ G    A E    +     +  W A++ G  ++ 
Sbjct: 336 VSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRV-VWNAIISGLAMNG 394

Query: 424 NVEL--GEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
            V++  G F     L + P D ++++ L    + AG  D
Sbjct: 395 YVKISFGLFGQVEKLGIKP-DGNTFIGLLCGCTHAGLVD 432


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 263/459 (57%), Gaps = 5/459 (1%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E        +V DE+P+ N VS  T++ R  ++ + +EA+ L+S+ML    RP+   F 
Sbjct: 323 AELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFS 382

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +  +L+DL  G+++H    K+   +NVFV SA++D+Y K   + +A  +F      
Sbjct: 383 SVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQK 442

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+V + ++I G     +  +A +LF++MP RNV SWN++I GY+Q  +  +A+  F  ML
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAML 502

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G  P   T    ++A A++ +L MGK  HA  +K   K  +FVG +L   YAK G ++
Sbjct: 503 ASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLD 562

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S  VF ++ +RN V W A+I G A+NG  EE+I  FE M   GI PN  T L +L+AC+
Sbjct: 563 SSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622

Query: 353 HTGLVEKGYSYFS--QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H+GLVE    YF   QA    P   K +HY CMVD+L+R+G   EA++ L  +       
Sbjct: 623 HSGLVEHAMHYFEMMQACGISP---KAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEAN 679

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL  C I+ N E+GE AA+R+  LD ++ + YV+LSN  +  GKW + + +R  MK
Sbjct: 680 SWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
              + +  GCSW++I+ +   F + +  H +  ++Y +L
Sbjct: 740 GINLKKDGGCSWVQIRGQYQAFFSWETKHPLLPDVYEML 778



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 182/389 (46%), Gaps = 36/389 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +++ + P  +V   T +I  F      ++A+ +F  ML   + P+E T  SVI +     
Sbjct: 200 ELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAG 259

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + +L   +   A K  L   N+ V ++++ LY++    + A R+F++    +VVS+T ++
Sbjct: 260 EFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALL 319

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    E A ++  EMP RN VSW  ++  + Q G  +EAV+L+ +ML +G  PN S
Sbjct: 320 DVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNIS 379

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A A++  L  G+  H   +K     +VFV ++LI  Y KC  + D+ ++F  L
Sbjct: 380 CFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSL 439

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMR---------------------------- 333
            ++NIV WN++I GY+ N +  EA E F++M                             
Sbjct: 440 PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFH 499

Query: 334 ---INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSR 389
               +G  P  +T   +L AC     +E G      AK+   G+ +       + D+ ++
Sbjct: 500 AMLASGQSPGEITFSSVLLACASLCSLEMG--KMVHAKIIKLGIKESIFVGTALSDMYAK 557

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           SG    +K   Y++P    +  W A++ G
Sbjct: 558 SGDLDSSKRVFYEMPKRNDVA-WTAMIQG 585



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 34/298 (11%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           ++K   I  A R+F+     +VVSYTTM+  L+KR    DA++L+++ P  +V  + AMI
Sbjct: 158 HVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMI 217

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK---- 268
            G+      ++A+ +F EML  G+ PN  TL   I A        +  S    A+K    
Sbjct: 218 AGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLL 277

Query: 269 -------------FLGK---------------LDVFVGNSLISFYAKCGSMEDSLLVFDK 300
                        +L K                DV    +L+  YA+ G +E +  V D+
Sbjct: 278 DKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDE 337

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN V+W  ++  + Q G  +EA+  + +M  +G RPN      +L AC     +  G
Sbjct: 338 MPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSG 397

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               +Q  L+          + ++D+  +  +  +A+   Y LP    I  W +L+ G
Sbjct: 398 RKIHNQT-LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNSLISG 453



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 107/203 (52%), Gaps = 4/203 (1%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S + K     ++F ++P  NV S  +II  +A+   + +A+  F  ML     P E
Sbjct: 451 ISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGE 510

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF SV+ +  +L  L +GK +HA   K+G++ ++FVG+A+ D+Y K   ++ + RVF +
Sbjct: 511 ITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYE 570

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEA 224
               N V++T MI GL +    E+++ LF++M    +     ++ A++   S +G  E A
Sbjct: 571 MPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHA 630

Query: 225 VNLFIEMLREGLVPNHSTLPCAI 247
           ++ F  M   G+ P      C +
Sbjct: 631 MHYFEMMQACGISPKAKHYTCMV 653


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 172/497 (34%), Positives = 276/497 (55%), Gaps = 36/497 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH-HYEEAIYLFSRMLLLNIRPS 107
           V CG       S  +VF+++   + V+  +I+  FAK+  H+E A  LF ++     +P+
Sbjct: 52  VRCGD----IDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI----PQPN 103

Query: 108 EFTFGSVIP---------------SSTALEDLNLGKQLHAWATKVGL------------Q 140
             ++  ++                 S  L+D+     + +   +VGL            +
Sbjct: 104 TVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPE 163

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
            N    SA++  Y+    ++ A   F      +V+++T MI G +K  R E A +LFQEM
Sbjct: 164 KNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEM 223

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
             R +V+WNAMI GY + GR E+ + LF  ML  G+ PN  +L   ++  +N++AL +GK
Sbjct: 224 SMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGK 283

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
             H    K     D   G SL+S Y+KCG ++D+  +F ++  +++V WNA+I GYAQ+G
Sbjct: 284 QVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHG 343

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
            G++A+  F+ M+  G++P+ +T + +L ACNH GLV+ G  YF+  + +     KPEHY
Sbjct: 344 AGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHY 403

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP 440
           ACMVDLL R+G+  EA + +  +PF P    +  LLG C+IH N+ L EFAA+ +L LDP
Sbjct: 404 ACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDP 463

Query: 441 EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHH 500
              + YV L+N  +   +WD+V++IRR MK+  + ++PG SWIEI S VH F + DR H 
Sbjct: 464 TIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHP 523

Query: 501 MNDEIYAVLRSCTEQIR 517
               I+  L+   ++++
Sbjct: 524 ELASIHEKLKDLEKKMK 540



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 135/315 (42%), Gaps = 42/315 (13%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTH----------------------------- 170
            +NV   + ++  Y++   I+ A RVFED                               
Sbjct: 38  NNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFE 97

Query: 171 ---NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
               PN VSY  M+          DA   F  MP ++V SWN MI   +Q G   EA  L
Sbjct: 98  KIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRL 157

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F  M  +  V + S +    +A  ++ A    + F+A  ++      V    ++I+ Y K
Sbjct: 158 FSAMPEKNCV-SWSAMVSGYVACGDLDA--AVECFYAAPMR-----SVITWTAMITGYMK 209

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
            G +E +  +F +++ R +VTWNA+I GY +NGR E+ +  F  M   G++PN ++L  +
Sbjct: 210 FGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSV 269

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L  C++   ++ G     Q   + P          +V + S+ G  K+A E    +P   
Sbjct: 270 LLGCSNLSALQLG-KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-RK 327

Query: 408 GIGFWKALLGGCQIH 422
            +  W A++ G   H
Sbjct: 328 DVVCWNAMISGYAQH 342


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 173/470 (36%), Positives = 270/470 (57%), Gaps = 10/470 (2%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +  +  Q  D + +  VV+   +I  +     + EA+ +F +M LL I+  EFT+ SV+ 
Sbjct: 240 ELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLS 299

Query: 117 SSTALEDLNLGKQLHAWATKV----GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +         GKQ+HA+  +      L  ++ V +A+  LY K   ++EA +VF      
Sbjct: 300 ACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK 359

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           ++VS+  ++ G +   R ++A   F+EMP RN+++W  MI G +Q G  EE++ LF  M 
Sbjct: 360 DLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMK 419

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            EG  P       AIIA A +AAL  G+  HA  V+      +  GN+LI+ YAKCG +E
Sbjct: 420 SEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVE 479

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  +F  +   + V+WNA+I    Q+G G +A+E FE M    I P+ +T L +L  C+
Sbjct: 480 AAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCS 539

Query: 353 HTGLVEKGYSYF-SQAKLED--PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H GLVE+G+ YF S + L    PG    +HYA M+DLL R+G+F EAK+ +  +P +PG 
Sbjct: 540 HAGLVEEGHRYFKSMSGLYGICPG---EDHYARMIDLLCRAGKFSEAKDMIETMPVEPGP 596

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W+ALL GC+IH N++LG  AA R+  L P+   +YV+LSN  +  G+WD+V+ +R+ M
Sbjct: 597 PIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLM 656

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           ++KG+ + PGCSWIE+++KVHVF+  D  H     +Y  L     ++R+ 
Sbjct: 657 RDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKL 706



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 165/364 (45%), Gaps = 58/364 (15%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIG--------RFAKQHHYEE----- 91
           R   V C  +S    S H +FDE+   ++V+ TT+I           A++  +       
Sbjct: 55  RLIDVYC--KSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIR 112

Query: 92  --------------------AIYLFSRMLLLNIRPSEFTFGSVIPS-STALEDLNLGKQL 130
                               AI LF  +L    RP  FTF SV+ + +  +ED    +Q+
Sbjct: 113 DTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQI 172

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSS---------IEEATRVFEDTHNPNVVSYTTMI 181
           H    K G      V +A+L +++K +S         +  A ++F++    + +S+TTMI
Sbjct: 173 HCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMI 232

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G ++    + A +    M  + VV+WNAMI GY   G   EA+ +F +M   G+  +  
Sbjct: 233 AGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEF 292

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGK----LDVFVGNSLISFYAKCGSMEDSLLV 297
           T    + A AN      GK  HA  ++   +      + V N+L + Y KCG ++++  V
Sbjct: 293 TYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQV 352

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++  +++V+WNA++ GY   GR +EA  FFE M    +         L W    +GL 
Sbjct: 353 FNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNL---------LTWTVMISGLA 403

Query: 358 EKGY 361
           + G+
Sbjct: 404 QNGF 407



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 47/340 (13%)

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           ++ + +HA     G +   ++ + ++D+Y K S +  A  +F++   P++V+ TT+I   
Sbjct: 32  SIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAH 91

Query: 185 LKRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                   A ++F   P   R+ V +NAMI GYS       A+ LF ++LR G  P++ T
Sbjct: 92  SSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFT 151

Query: 243 LPCAIIAAANIAA-LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG---------SME 292
               + A A I       +  H   VK        V N+L+S + KC           M 
Sbjct: 152 FTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMA 211

Query: 293 DSLLVFDKLTERN-------------------------------IVTWNAVICGYAQNGR 321
            +  +FD++TER+                               +V WNA+I GY  +G 
Sbjct: 212 AARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGF 271

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPE 378
             EA+E F +M + GI+ +  T   +L AC + G    G   ++Y  + +          
Sbjct: 272 FLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLS 331

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               +  L  + G+  EA++    +P    +  W A+L G
Sbjct: 332 VNNALATLYWKCGKVDEARQVFNQMPVKDLVS-WNAILSG 370


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 272/462 (58%), Gaps = 39/462 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL--LNIRPSEFTFGSVIPSSTA 120
           ++F E+P  NV+S T++IG   +    EEA+ LF +M+   + ++P+  T+  VI +   
Sbjct: 140 RLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACAN 199

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
              L  G Q+HA   K+G   + ++ +A++  Y                           
Sbjct: 200 ASALYQGVQIHAHVFKLGYSFDAYISAALITFYANC------------------------ 235

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                  ++ ED+L++F    H NVV W A++ GY    ++E+A+ +F EM+REG++PN 
Sbjct: 236 -------KQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQ 288

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           S+   A+ +   + AL  G+  H  AVK   + DVFVGNSLI  Y +CG++ D +++F +
Sbjct: 289 SSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 348

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++++NIV+WN+VI G AQ+G G  A+ FF +M  + + P+ +T  GLL AC+H+G+ +KG
Sbjct: 349 ISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKG 408

Query: 361 ---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
              + YFS+ K  +   +K +HYACMVD+L RSG+ +EA+E + ++P       W  LL 
Sbjct: 409 RCLFKYFSENKSAE---VKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLS 465

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C +HS +E+ E AA+ I+ L+P   S+YV+LSN  + A +W +VS IRREMK++G+T+ 
Sbjct: 466 ACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQ 525

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           PG SWI IK   + F++GDR+H  +D IY  L     +++E 
Sbjct: 526 PGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKEL 567



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 156/300 (52%), Gaps = 10/300 (3%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
            + +      VFD+V   +V   T +I  +A+ + ++ A+ LF  M + ++     ++ S
Sbjct: 7   RNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDV----VSWNS 62

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           +I       DL + ++L         + +V   + +++ +++   IE A  +F      +
Sbjct: 63  MIKGCFDCADLTMARKLFDEMP----ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRD 118

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           + ++ +MI G     R ED L+LFQEMP RNV+SW +MIGG  Q GR+EEA+ LF +M+ 
Sbjct: 119 IAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMG 178

Query: 234 EG--LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            G  + P  ST  C I A AN +AL  G   HA   K     D ++  +LI+FYA C  M
Sbjct: 179 CGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQM 238

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           EDSL VF      N+V W A++ GY  N + E+A++ F  M   G+ PN  +    L +C
Sbjct: 239 EDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSC 298



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 12/211 (5%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           +++   I+EA  VF+    P+V  YT MI G  +  RF+ AL+LF EMP ++VVSWN+MI
Sbjct: 5   HLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMI 64

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI-AALGMGKSFHACAVKFLG 271
            G         A  LF EM    +V + +T+    +    I  A G+   F+    +   
Sbjct: 65  KGCFDCADLTMARKLFDEMPERSVV-SWTTMINGFLQFGKIEVAEGL---FYKMPFR--- 117

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
             D+   NS+I  Y   G +ED L +F ++  RN+++W ++I G  Q+GR EEA+  F +
Sbjct: 118 --DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 175

Query: 332 MRING--IRPNGVTLLGLLWACNHTGLVEKG 360
           M   G  ++P   T   ++ AC +   + +G
Sbjct: 176 MMGCGVEVKPTSSTYCCVITACANASALYQG 206



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 39/201 (19%), Positives = 85/201 (42%), Gaps = 13/201 (6%)

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           +I+ + +   ++++  VFDK++  ++  +  +I GYA+N R + A++ F  M +  +   
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSW 60

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
              + G    C    +  K +    +  +          +  M++   + G+ + A+   
Sbjct: 61  NSMIKGCF-DCADLTMARKLFDEMPERSVVS--------WTTMINGFLQFGKIEVAEGLF 111

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           Y +PF   I  W +++ G   +  VE G    R    +   +V S+  +   L   G+ +
Sbjct: 112 YKMPFRD-IAAWNSMIYGYCCNGRVEDG---LRLFQEMPCRNVISWTSMIGGLDQHGRSE 167

Query: 461 NVSNIRREMKEKGMTRVPGCS 481
               + R+M   G+   P  S
Sbjct: 168 EALGLFRQMMGCGVEVKPTSS 188


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 181/517 (35%), Positives = 276/517 (53%), Gaps = 45/517 (8%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
            +  C  S +L+   K+H     +L  ++      L+   I      CGS  +     H+
Sbjct: 57  FITACAQSKNLDDARKIHG----HLASSRFEGDAFLDNSLIHL-YCKCGSVVE----AHK 107

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD++   ++VS T++I  +A+     EAI L   ML    +P+ FTF S++ ++ A  D
Sbjct: 108 VFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYAD 167

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             +G Q+HA A K     +V+VGSA+LD+Y +   ++ AT VF+                
Sbjct: 168 SGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFD---------------- 211

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          ++  +N VSWNA+I G+++ G  E A+ +F EM R G    H T 
Sbjct: 212 ---------------KLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTY 256

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                  A I AL  GK  HA  VK   KL  FVGN+++  YAK GSM D+  VF+++  
Sbjct: 257 SSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLN 316

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++VTWN+++  +AQ G G+EA+  FE MR +GI  N +T L +L AC+H GLV++G  Y
Sbjct: 317 KDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHY 376

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F   K  +   L+P  EHY  +VDLL R+G    A  F++ +P +P    W ALL  C++
Sbjct: 377 FDMIKEYN---LEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRM 433

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ++G+FAA  +  LDP+D    V+L N  +  G WD  + +R+ MK  G+ + P CS
Sbjct: 434 HKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACS 493

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+EI + VH+FV  D  H   +EIY +    + +IR+
Sbjct: 494 WVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRK 530



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 12/188 (6%)

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHA--CAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           L P        I A A    L   +  H    + +F G  D F+ NSLI  Y KCGS+ +
Sbjct: 47  LAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEG--DAFLDNSLIHLYCKCGSVVE 104

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN- 352
           +  VFDK+ ++++V+W ++I GYAQN    EAI     M     +PNG T   LL A   
Sbjct: 105 AHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 353 --HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
              +G+  + ++   +    +   +     + ++D+ +R G+   A      L    G+ 
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVG----SALLDMYARCGKMDMATAVFDKLDSKNGVS 220

Query: 411 FWKALLGG 418
            W AL+ G
Sbjct: 221 -WNALISG 227


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 172/478 (35%), Positives = 274/478 (57%), Gaps = 39/478 (8%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  V CGS  D      + F+   + N ++ + ++  FA+    ++A+ LF  M   
Sbjct: 259 ALVTMYVKCGSLEDAL----KTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQS 314

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
              PSEFT   VI + +    +  G+Q+H ++ K+G +  ++V SA++D+Y K  SI +A
Sbjct: 315 GELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDA 374

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            + FE    P+VV                                W ++I GY Q G  E
Sbjct: 375 RKGFECIQQPDVVL-------------------------------WTSIITGYVQNGDYE 403

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
            A+NL+ +M   G++PN  T+   + A +N+AAL  GK  HA  +K+   L++ +G++L 
Sbjct: 404 GALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALS 463

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + YAKCGS++D   +F ++  R++++WNA+I G +QNGRG E +E FE+M + G +P+ V
Sbjct: 464 AMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNV 523

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFL 400
           T + LL AC+H GLV++G+ YF    + D   + P  EHYACMVD+LSR+G+  EAKEF+
Sbjct: 524 TFVNLLSACSHMGLVDRGWVYFKM--MFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFI 581

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
                D G+  W+ LL   + H + +LG +A  +++ L   + S+YV+LS+  +  GKW+
Sbjct: 582 ESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWE 641

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +V  +R  MK +G+T+ PGCSWIE+KS  HVFV GD  H   DEI   L+  T+ +++
Sbjct: 642 DVERVRGMMKARGVTKEPGCSWIELKSLTHVFVVGDNMHPQIDEIRLGLKLLTKLMKD 699



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 162/299 (54%), Gaps = 33/299 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL--LNIRPSEFTFGSVIPSSTAL 121
           +FDE+P+ N VS  T+I  +A Q   +EA  LF  M         +EF F SV+ + T  
Sbjct: 173 LFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCY 232

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +N G+Q+H+ A K GL   V V +A++ +Y+K  S+E+A + FE + N N ++++ M+
Sbjct: 233 MLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMV 292

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G                               ++Q G +++A+ LF +M + G +P+  
Sbjct: 293 TG-------------------------------FAQFGDSDKALKLFYDMHQSGELPSEF 321

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   I A ++  A+  G+  H  ++K   +L ++V ++L+  YAKCGS+ D+   F+ +
Sbjct: 322 TLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECI 381

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            + ++V W ++I GY QNG  E A+  + +M++ G+ PN +T+  +L AC++   +++G
Sbjct: 382 QQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQG 440



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 199/394 (50%), Gaps = 38/394 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIY---LFSRMLLLN--IRPSEFTFG 112
           FS  + VFD + + +VVS   +I  F++Q  +  +++   LF ++++ +  I P+  T  
Sbjct: 61  FSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLT 120

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V  +++ L D   G+Q HA A K     +VF  S++L++Y K   + EA  +F++    
Sbjct: 121 GVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPER 180

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N VS+ TMI G   +E  ++A +LF+ M H              + G+NE    +F  +L
Sbjct: 181 NAVSWATMISGYASQELADEAFELFKLMRHE-------------EKGKNENEF-VFTSVL 226

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
                   S L C ++       +  G+  H+ A+K      V V N+L++ Y KCGS+E
Sbjct: 227 --------SALTCYML-------VNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLE 271

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+L  F+    +N +TW+A++ G+AQ G  ++A++ F  M  +G  P+  TL+G++ AC+
Sbjct: 272 DALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACS 331

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
               + +G      + L+    L+    + +VD+ ++ G   +A++  ++    P +  W
Sbjct: 332 DACAIVEGRQMHGYS-LKLGYELQLYVLSALVDMYAKCGSIVDARKG-FECIQQPDVVLW 389

Query: 413 KALLGGCQIHSNVE--LGEFAARRILALDPEDVS 444
            +++ G   + + E  L  +   ++  + P D++
Sbjct: 390 TSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLT 423



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 36/220 (16%)

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           T  + L  G+ LHA     G  S+  + +++++LY K S   +A  VF+  +N       
Sbjct: 21  TRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINN------- 73

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF-----IEMLR 233
                                   ++VVSWN +I  +SQ   +  ++++      + M  
Sbjct: 74  ------------------------KDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAH 109

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           + +VPN  TL     AA+ ++    G+  HA AVK     DVF  +SL++ Y K G + +
Sbjct: 110 KTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFE 169

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +  +FD++ ERN V+W  +I GYA     +EA E F+ MR
Sbjct: 170 ARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMR 209


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 272/462 (58%), Gaps = 39/462 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL--LNIRPSEFTFGSVIPSSTA 120
           ++F E+P  NV+S T++IG   +    EEA+ LF +M+   + ++P+  T+  VI +   
Sbjct: 156 RLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACAN 215

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
              L  G Q+HA   K+G   + ++ +A++  Y                           
Sbjct: 216 ASALYQGVQIHAHVFKLGYSFDAYISAALITFYANC------------------------ 251

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                  ++ ED+L++F    H NVV W A++ GY    ++E+A+ +F EM+REG++PN 
Sbjct: 252 -------KQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQ 304

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           S+   A+ +   + AL  G+  H  AVK   + DVFVGNSLI  Y +CG++ D +++F +
Sbjct: 305 SSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 364

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++++NIV+WN+VI G AQ+G G  A+ FF +M  + + P+ +T  GLL AC+H+G+ +KG
Sbjct: 365 ISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKG 424

Query: 361 ---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
              + YFS+ K  +   +K +HYACMVD+L RSG+ +EA+E + ++P       W  LL 
Sbjct: 425 RCLFKYFSENKSAE---VKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLS 481

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C +HS +E+ E AA+ I+ L+P   S+YV+LSN  + A +W +VS IRREMK++G+T+ 
Sbjct: 482 ACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQ 541

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           PG SWI IK   + F++GDR+H  +D IY  L     +++E 
Sbjct: 542 PGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKEL 583



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 156/300 (52%), Gaps = 10/300 (3%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
            + +      VFD+V   +V   T +I  +A+ + ++ A+ LF  M + ++     ++ S
Sbjct: 23  RNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDV----VSWNS 78

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           +I       DL + ++L         + +V   + +++ +++   IE A  +F      +
Sbjct: 79  MIKGCFDCADLTMARKLFDEMP----ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRD 134

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           + ++ +MI G     R ED L+LFQEMP RNV+SW +MIGG  Q GR+EEA+ LF +M+ 
Sbjct: 135 IAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMG 194

Query: 234 EG--LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            G  + P  ST  C I A AN +AL  G   HA   K     D ++  +LI+FYA C  M
Sbjct: 195 CGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQM 254

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           EDSL VF      N+V W A++ GY  N + E+A++ F  M   G+ PN  +    L +C
Sbjct: 255 EDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSC 314



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 12/221 (5%)

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
            F   +++  +++   I+EA  VF+    P+V  YT MI G  +  RF+ AL+LF EMP 
Sbjct: 11  TFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV 70

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI-AALGMGKS 261
           ++VVSWN+MI G         A  LF EM    +V + +T+    +    I  A G+   
Sbjct: 71  KDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVV-SWTTMINGFLQFGKIEVAEGL--- 126

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
           F+    +     D+   NS+I  Y   G +ED L +F ++  RN+++W ++I G  Q+GR
Sbjct: 127 FYKMPFR-----DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGR 181

Query: 322 GEEAIEFFERMRING--IRPNGVTLLGLLWACNHTGLVEKG 360
            EEA+  F +M   G  ++P   T   ++ AC +   + +G
Sbjct: 182 SEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQG 222



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 90/214 (42%), Gaps = 21/214 (9%)

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           K   F   S+I+ + +   ++++  VFDK++  ++  +  +I GYA+N R + A++ F  
Sbjct: 8   KFCTFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYE 67

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH----YACMVDLL 387
           M +  +    V+   ++  C     +      F +          PE     +  M++  
Sbjct: 68  MPVKDV----VSWNSMIKGCFDCADLTMARKLFDEM---------PERSVVSWTTMINGF 114

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447
            + G+ + A+   Y +PF   I  W +++ G   +  VE G    R    +   +V S+ 
Sbjct: 115 LQFGKIEVAEGLFYKMPFRD-IAAWNSMIYGYCCNGRVEDG---LRLFQEMPCRNVISWT 170

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
            +   L   G+ +    + R+M   G+   P  S
Sbjct: 171 SMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSS 204


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 256/454 (56%), Gaps = 31/454 (6%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF E+   + VS   II    +   YE+ I   + ML   + P +FT+GSV+ +   L+ 
Sbjct: 410 VFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQS 469

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G  +H  A K GL  + FV S ++D+Y K  +I EA                     
Sbjct: 470 LEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQ-------------------- 509

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                      KL   +  + +VSWN++I G+S T ++EEA   F EML  G+ P+H T 
Sbjct: 510 -----------KLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTY 558

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A + +GK  H   +K     D ++ ++L+  YAKCG+M DSLL+F+K  +
Sbjct: 559 ATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARK 618

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            + V+WNA+ICGYA +G+G EA+E FERM+   + PN  T + +L AC+H GL++ G  Y
Sbjct: 619 LDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQY 678

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F         + + EH+ACMVD+L RS   +EA EF+  +P +     WK LL  C+I  
Sbjct: 679 FHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQ 738

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           +VE+ E AA  +L LDP+D S Y++LSN  + +GKW +VS  RR M++  + + PGCSWI
Sbjct: 739 DVEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWI 798

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           E++S++H F+ GD+ H  + E+Y +L S   +++
Sbjct: 799 EVQSEMHGFLVGDKVHPRSKEVYEMLNSLIGEMK 832



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 35/298 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +PD +VVS  T+I  + +   +  ++ L   M    +     T   ++ S   L+D
Sbjct: 107 LFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDD 166

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LG Q+HA A K GL+++V  GSA++D+Y K  S++                       
Sbjct: 167 LALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLD----------------------- 203

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                   DAL+ F  M  RN VSW A I G  Q  +    + LF++M R GL  +    
Sbjct: 204 --------DALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAY 255

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
             A  + A +  L   +  HA A+K +   D  VG +++  YAK G++ D+   F  L  
Sbjct: 256 ASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPH 315

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            N+ T NA++ G  + G G EA++ F+ M  +G+  + ++L G+  AC       KGY
Sbjct: 316 HNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEV----KGY 369



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 110/221 (49%)

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +S     L  G+  HA     G     FV + +L +Y +      A  VF+   + + VS
Sbjct: 28  ASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVS 87

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + TM+   +     + A  LF  MP  +VVSWN +I GY Q G    +V L +EM R G+
Sbjct: 88  WNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGV 147

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             + +TL   + +   +  L +G   HA AVK   + DV  G++L+  Y KC S++D+L 
Sbjct: 148 ALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALR 207

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            F  + ERN V+W A I G  QN +    +E F +M+  G+
Sbjct: 208 FFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGL 248



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 180/412 (43%), Gaps = 41/412 (9%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  + + N VS    I    +   Y   + LF +M  L +  S+  + S   S  A+  L
Sbjct: 209 FHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCL 268

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           +  +QLHA A K    S+  VG+AI+D+Y K  ++ +A R F                  
Sbjct: 269 STARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIG---------------- 312

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                          +PH NV + NAM+ G  +TG   EA+ LF  M R G+  +  +L 
Sbjct: 313 ---------------LPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLS 357

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
               A A +     G   H  AVK    +DV V N+++  Y KC ++ ++ LVF ++ +R
Sbjct: 358 GVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQR 417

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           + V+WNA+I    QN   E+ I     M  +G+ P+  T   +L AC   GL    Y   
Sbjct: 418 DSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKAC--AGLQSLEYGLV 475

Query: 365 SQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              K    G+ L     + +VD+  + G   EA++ L+D      +  W +++ G  +  
Sbjct: 476 VHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQK-LHDRIGGQELVSWNSIISGFSLTK 534

Query: 424 NVELGE--FAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREM 469
             E  +  F+    + + P+  +   +L    ++A    GK  +   I++EM
Sbjct: 535 QSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEM 586



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 179/418 (42%), Gaps = 44/418 (10%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           C +   L+   +LH+ A   +  + +          + T  V   +++       + F  
Sbjct: 262 CAAMPCLSTARQLHAHAIKNVFSSDRV---------VGTAIVDVYAKAGNLVDARRAFIG 312

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  NV +   ++    +     EA+ LF  M    +     +   V  +   ++    G
Sbjct: 313 LPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQG 372

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            Q+H  A K G   +V V +AILDLY K  ++ EA  VF                     
Sbjct: 373 LQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVF--------------------- 411

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                     QEM  R+ VSWNA+I    Q    E+ +    EMLR G+ P+  T    +
Sbjct: 412 ----------QEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVL 461

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A A + +L  G   H  A+K    LD FV ++++  Y KCG++ ++  + D++  + +V
Sbjct: 462 KACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELV 521

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WN++I G++   + EEA  FF  M   G++P+  T   +L  C +   +E G     Q 
Sbjct: 522 SWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQI 581

Query: 368 KLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
             ++  ML  E+  + +VD+ ++ G   ++   +++         W A++ G  +H  
Sbjct: 582 IKQE--MLGDEYISSTLVDMYAKCGNMPDSL-LMFEKARKLDFVSWNAMICGYALHGQ 636



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 9/202 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+     +   ++ D +    +VS  +II  F+     EEA   FS ML + ++P  FT
Sbjct: 502 CGA----ITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFT 557

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + +V+ +   L  + LGKQ+H    K  +  + ++ S ++D+Y K  ++ ++  +FE   
Sbjct: 558 YATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAR 617

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEAVN 226
             + VS+  MICG     +  +AL++F+ M   NVV    ++ A++   S  G  ++   
Sbjct: 618 KLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQ 677

Query: 227 LFIEML-REGLVPNHSTLPCAI 247
            F  M  R  LVP      C +
Sbjct: 678 YFHLMTSRYKLVPQLEHFACMV 699



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 77/205 (37%), Gaps = 35/205 (17%)

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN- 305
           + A+A  +AL  G++ HA  +        FV N L+  YA+CG    +  VFD +  R+ 
Sbjct: 26  LCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDT 85

Query: 306 ------------------------------IVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
                                         +V+WN +I GY Q+G    ++     M   
Sbjct: 86  VSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRR 145

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFK 394
           G+  +  TL  LL +C   GL +        A     G+       + +VD+  +     
Sbjct: 146 GVALDRTTLAVLLKSCG--GLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLD 203

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGC 419
           +A  F + +     +  W A + GC
Sbjct: 204 DALRFFHGMGERNSVS-WGAAIAGC 227


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 175/498 (35%), Positives = 285/498 (57%), Gaps = 25/498 (5%)

Query: 19  KLHSLAPNYLIETQKASVQKLETPAIRTDSVS-------------CGSESDKFSSVHQVF 65
           KL +L  NY    Q   + +++   I    +S             C + ++ + +   +F
Sbjct: 10  KLTTLLLNYAEHFQTKQLLQIQAQLITNPPLSLHPNLIAVKLIGACAANANLYHA-QLIF 68

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL--NIRPSEFTFGSVIPSSTALED 123
            ++P+ NV S   II        +E A+  F+R L L     P+E+ + S+I +   LE 
Sbjct: 69  AQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEA 128

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  G ++HA   K GL +N+ +G++++D+Y K      A +VF++    +VVS+ TM+ G
Sbjct: 129 IADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSG 188

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHST 242
                  E A ++F +M  R+V+SWNAMIGGY Q G+  +A+ +F EM +  G+VP+  T
Sbjct: 189 YCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVT 248

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLG----KLDVFVGNSLISFYAKCGSMEDSLLVF 298
           L   + A A++ AL  G+       +F+G     L++++GN+LI  YAKCG+ME++  +F
Sbjct: 249 LVSVLSACAHVGALDFGRWID----RFVGWRGRGLNLYLGNALIDMYAKCGTMEEARRIF 304

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D + ER++++W+ +ICG   +G  +EA  ++ +M   G++PN VT +GLL AC+H GLV+
Sbjct: 305 DGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVD 364

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           KG   FS+   E   + K  HY C++DLLSR+GR  EA++ +  +P +P +  W ALLGG
Sbjct: 365 KGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGG 424

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+IH +   GE  A+ +L LD E   SYV ++ A +  G+ D+ +N    M+ KG+ + P
Sbjct: 425 CRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIKDP 484

Query: 479 GCSWIEIKSKVHVFVTGD 496
           GCS IE+ + VH F   D
Sbjct: 485 GCSKIEVHNTVHEFKECD 502


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 261/470 (55%), Gaps = 40/470 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+ SD       VFD++P  +VVS T +I  +A+ +   EAI L   ML    RP+ FT
Sbjct: 5   CGAVSD----ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F S++ ++ A    ++G+Q+HA A K     +V+VGSA+LD+Y +               
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARC-------------- 106

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                            E+ + A+ +F  +  +N VSWNA+I G+++    E  +  F E
Sbjct: 107 -----------------EQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAE 149

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M R G    H T      A A I AL  G+  HA  +K   KL  FVGN+++  YAK GS
Sbjct: 150 MQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGS 209

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M D+  VFD++ +R++VTWN ++   AQ G G+EA+  FE +R  GI+ N +T L +L A
Sbjct: 210 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 269

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C+H GLV++G  YF   K  +   ++PE  HY   VDLL R+G  KEA  F++ +P +P 
Sbjct: 270 CSHGGLVKEGKHYFDMMKDYN---VQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPT 326

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W ALLG C++H N ++G++AA  +  LDP+D    V+L N  +  GKW++ + +R+ 
Sbjct: 327 AAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKM 386

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           MK  G+ + P CSW++I++ VH+FV  D  H  + +IY +      +I++
Sbjct: 387 MKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKK 436



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 39/71 (54%)

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y KCG++ D+  VFDK+  R++V+W  +I GYAQN    EAI     M     RPNG T 
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 345 LGLLWACNHTG 355
             LL A    G
Sbjct: 62  TSLLKATGACG 72


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 169/457 (36%), Positives = 261/457 (57%), Gaps = 31/457 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FDE+P  +VVS   +I  +A+    +EA+ LF  M   N+ P+E T  SV+ +     
Sbjct: 216 QLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSN 275

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L+LG  + +W    GL SN+ + +A++D+Y K                          C
Sbjct: 276 ALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSK--------------------------C 309

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G L+  R     +LF +M  R+V+SWN MIGGY+     +EA+ LF EML  G+ P   T
Sbjct: 310 GDLQTAR-----ELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEIT 364

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + + A++ A+ +GK  HA   K    +   +  SLI  YAKCG++  +  VFD + 
Sbjct: 365 FLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMK 424

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +++ +WNA+ICG A +G+ ++A E F +M  +GI PN +T +G+L AC H GLV+ G  
Sbjct: 425 IKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQ 484

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +FS    +     K +HY CM+DLL R+G F+EA+  L ++   P    W +LLG C+ H
Sbjct: 485 FFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDH 544

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
             VELGE  A R+  L+P++  +YV+LSN  + AGKWD+V+ IR  + ++GM +VPGC+ 
Sbjct: 545 GRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTT 604

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           IE+ + VH F+ GD+ H  +++IY +L    EQ++ F
Sbjct: 605 IEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVF 641



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 200/380 (52%), Gaps = 8/380 (2%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           S  S S   S    +F+ + + N+    ++I   +       A+  F RM+   + P+ +
Sbjct: 71  SAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSY 130

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF  ++ S   L   + GKQ+HA   K+G  S+VF+ ++++++Y +   +  A  VF+ +
Sbjct: 131 TFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQS 190

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           +  + +S+T +I G       + A +LF EMP ++VVSWNAMI GY+Q GR++EA+ LF 
Sbjct: 191 NFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFE 250

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M +  + PN ST+   + A A   AL +G S  +         ++ + N+LI  Y+KCG
Sbjct: 251 DMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCG 310

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++ +  +FD + ER++++WN +I GY      +EA+  F  M  +G+ P  +T L +L 
Sbjct: 311 DLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILP 370

Query: 350 ACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           +C H G ++ G   ++Y ++    +   +       ++DL ++ G    A++ ++D    
Sbjct: 371 SCAHLGAIDLGKWIHAYINK----NFNSVSTSLSTSLIDLYAKCGNIVAARQ-VFDGMKI 425

Query: 407 PGIGFWKALLGGCQIHSNVE 426
             +  W A++ G  +H   +
Sbjct: 426 KSLASWNAMICGLAMHGQAD 445



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 166/370 (44%), Gaps = 70/370 (18%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           KQ+HA   K GL + +F  S +++              F        +SY          
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIE--------------FSAVSRSGDISY---------- 81

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                A+ LF  +   N+  WN+MI G S +     A+  F+ M+  G+ PN  T P  +
Sbjct: 82  -----AISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLL 136

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK------- 300
            + A +A+   GK  HA  +K     DVF+  SLI+ YA+ G M ++ LVFD+       
Sbjct: 137 KSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAI 196

Query: 301 ------------------------LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
                                   +  +++V+WNA+I GYAQ GR +EA+  FE MR   
Sbjct: 197 SFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKAN 256

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKE 395
           + PN  T++ +L AC  +  ++ G S   ++ +ED G+    +    ++D+ S+ G  + 
Sbjct: 257 VPPNESTIVSVLSACAQSNALDLGNSM--RSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA--LDPEDVSSYVMLSNAL 453
           A+E L+D   +  +  W  ++GG     + +      R +LA  ++P +++   +L +  
Sbjct: 315 ARE-LFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCA 373

Query: 454 SVA----GKW 459
            +     GKW
Sbjct: 374 HLGAIDLGKW 383



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 37/202 (18%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +  QVFD +   ++ S   +I   A     ++A  LFS+M    I P+E TF  ++ +  
Sbjct: 415 AARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACK 474

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               ++LG+Q              F  S + D  I                +P    Y  
Sbjct: 475 HAGLVDLGQQ--------------FFSSMVQDYKI----------------SPKSQHYGC 504

Query: 180 MICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           MI  L +   FE+A  L Q M  + +   W +++G     GR E       E++ E L  
Sbjct: 505 MIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELG-----ELVAERLFE 559

Query: 239 NHSTLPCAIIAAANIAALGMGK 260
                P A +  +NI A G GK
Sbjct: 560 LEPDNPGAYVLLSNIYA-GAGK 580


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 268/469 (57%), Gaps = 36/469 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG+  D       V D +P+ +VVS TT+I  +++   + EA+ LF +ML     P+E
Sbjct: 56  VRCGALDD----ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNE 111

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +T  +V+ S +  + +  GKQ+H+   K   +S++FVGS++LD+Y K  +I+EA RVF D
Sbjct: 112 YTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVF-D 170

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           T                              +P R+VVS  A+I GY+Q G +EEA++LF
Sbjct: 171 T------------------------------LPERDVVSCTAIISGYAQKGLDEEALDLF 200

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            ++  EG+  NH T    + A + +A+L  GK  HA  ++      V + NSLI  Y+KC
Sbjct: 201 RQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKC 260

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +  S  VFD + ER++V+WNA++ GY ++G G E I  F+ +    ++P+ VTLL +L
Sbjct: 261 GKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVL 319

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
             C+H GLV++G   F     E   +L   HY C++DLL RSGR ++A   + ++PF+  
Sbjct: 320 SGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFEST 379

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W +LLG C++H+NV +GE  A+++L ++PE+  +YV+LSN  + AG W +V  +R+ 
Sbjct: 380 PSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKL 439

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M EK +T+ PG SWI +   +H F + +R H    +I A ++     I+
Sbjct: 440 MLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIK 488



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 154/299 (51%), Gaps = 39/299 (13%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+Q+HA       +  VF+G+ ++ +Y++                          CG L 
Sbjct: 29  GRQVHARMITARYRPAVFLGTRLVTMYVR--------------------------CGAL- 61

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
               +DA  +   MP R+VVSW  MI GYSQT R+ EA++LFI+MLR G +PN  TL   
Sbjct: 62  ----DDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATV 117

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + + +   ++  GK  H+  VK   +  +FVG+SL+  YAK  +++++  VFD L ER++
Sbjct: 118 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDV 177

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           V+  A+I GYAQ G  EEA++ F ++   G++ N VT   L+ A   +GL    Y     
Sbjct: 178 VSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTAL--SGLASLDYGKQVH 235

Query: 367 A---KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           A   + E P  +  ++   ++D+ S+ G+   ++  ++D   +  +  W A+L G   H
Sbjct: 236 ALILRKELPFFVALQN--SLIDMYSKCGKLLYSRR-VFDNMLERSVVSWNAMLMGYGRH 291



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
           AI A     AL  G+  HA  +    +  VF+G  L++ Y +CG+++D+  V D++ ER+
Sbjct: 16  AITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERS 75

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YS 362
           +V+W  +I GY+Q  R  EA++ F +M   G  PN  TL  +L +C+    + +G   +S
Sbjct: 76  VVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHS 135

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
              +   E    +     + ++D+ ++S   +EA+     LP
Sbjct: 136 LLVKTNFESHMFVG----SSLLDMYAKSENIQEARRVFDTLP 173


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 261/470 (55%), Gaps = 40/470 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+ SD       VFD++P  +VVS T +I  +A+ +   EAI L   ML    RP+ FT
Sbjct: 108 CGAVSD----ARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 163

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F S++ ++ A    ++G+Q+HA A K     +V+VGSA+LD+Y +               
Sbjct: 164 FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARC-------------- 209

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                            E+ + A+ +F  +  +N VSWNA+I G+++    E  +  F E
Sbjct: 210 -----------------EQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAE 252

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M R G    H T      A A I AL  G+  HA  +K   KL  FVGN+++  YAK GS
Sbjct: 253 MQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGS 312

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M D+  VFD++ +R++VTWN ++   AQ G G+EA+  FE +R  GI+ N +T L +L A
Sbjct: 313 MVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTA 372

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C+H GLV++G  YF   K  +   ++PE  HY   VDLL R+G  KEA  F++ +P +P 
Sbjct: 373 CSHGGLVKEGKHYFDMMKDYN---VQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPT 429

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W ALLG C++H N ++G++AA  +  LDP+D    V+L N  +  GKW++ + +R+ 
Sbjct: 430 AAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKM 489

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           MK  G+ + P CSW++I++ VH+FV  D  H  + +IY +      +I++
Sbjct: 490 MKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKK 539



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 31/257 (12%)

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           + P+   + S+I +    ++L   + +HA  ++  L  + F+ ++++ +Y K  ++ +A 
Sbjct: 56  LAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDAR 115

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            VF+                               +MP R+VVSW  +I GY+Q     E
Sbjct: 116 HVFD-------------------------------KMPSRDVVSWTYLIAGYAQNYMPAE 144

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A+ L  +MLR    PN  T    + A        +G+  HA AVK+    DV+VG++L+ 
Sbjct: 145 AIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLD 204

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YA+C  M+ +++VFD+L  +N V+WNA+I G+A+   GE  +  F  M+ NG      T
Sbjct: 205 MYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFT 264

Query: 344 LLGLLWACNHTGLVEKG 360
              +  A    G +E+G
Sbjct: 265 YSSMFSAFARIGALEQG 281


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 265/448 (59%), Gaps = 3/448 (0%)

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST--ALEDLNLGKQL 130
           +VS T+ I    +     EA   FSRM +  +RP+  TF +++ + T   LE L  G  +
Sbjct: 54  IVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSI 113

Query: 131 HAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           HA+  K+GL + NV VG+A++D+Y K   ++ A  +F++ H  N VS+ TMI G ++   
Sbjct: 114 HAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGE 173

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
             +A+ LF +M  R+ +SW +MIGG+ + G  E+A+  F EM   G+ P++ T+   + A
Sbjct: 174 VGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAA 233

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            AN+ ALG+G   +   +K   K ++ + NSLI  Y++CG +  +  VF+++ +R++V+W
Sbjct: 234 CANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSW 293

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           N++I G+A NG  EEA+EFF  MR  G RP+GV+  G L AC+H+GLV++G  +F   K 
Sbjct: 294 NSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKR 353

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
                 + EHY C+VDL SR+GR ++A   + ++P  P      +LL  C+ H +V L E
Sbjct: 354 TRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAE 413

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
              + +  +DP   S+YV+LSN  +  G+WD  S +R++MK  G+ + PG S IE+   +
Sbjct: 414 RLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSI 473

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           H FV GD+ H     IYA+L     ++R
Sbjct: 474 HEFVAGDKTHVETQNIYAMLDHLFLELR 501



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 140/338 (41%), Gaps = 72/338 (21%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++ + + +S T++IG F K+  +E+A+  F  M L  + P   T  SV+ +   L  
Sbjct: 180 LFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGA 239

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LG  ++ +  K   + N+ + ++++D+Y +   I  A +VFE     ++VS+ +MI  
Sbjct: 240 LGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIV- 298

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                         G++  G  EEA+  F  M +EG  P+  + 
Sbjct: 299 ------------------------------GFALNGHAEEALEFFNLMRKEGFRPDGVSF 328

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
             A+ A ++   +  G  F                              D +    K++ 
Sbjct: 329 TGALTACSHSGLVDEGLQFF-----------------------------DIMKRTRKISP 359

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC---NHTGLVEKG 360
           R I  +  ++  Y++ GR E+A+     M    ++PN V L  LL AC      GL E+ 
Sbjct: 360 R-IEHYGCLVDLYSRAGRLEDALNVIANMP---MKPNEVVLGSLLAACRTHGDVGLAERL 415

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
             Y  +    DPG     +Y  + ++ +  GR+  A +
Sbjct: 416 MKYLCEV---DPG--SDSNYVLLSNIYAAVGRWDGASK 448


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 174/479 (36%), Positives = 277/479 (57%), Gaps = 15/479 (3%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+  ++     +  + FD +P+ +VVS   ++  +A+    EE + LF  M+   I 
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIE 257

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P E T+ +VI + ++  D  L   L     +  +Q N FV +A+LD+Y K  SI  A R+
Sbjct: 258 PDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRI 317

Query: 166 FEDTHN-PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           F++     N V++  MI    +    + A +LF  MP RNVV+WN+MI GY+Q G++  A
Sbjct: 318 FDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMA 377

Query: 225 VNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG----KLDVFVGN 279
           + LF EM+  + L P+  T+   I A  ++ AL +G       V+FL     KL +   N
Sbjct: 378 IELFKEMITAKKLTPDEVTMVSVISACGHLGALELGN----WVVRFLTENQIKLSISGHN 433

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           ++I  Y++CGSMED+  VF ++  R++V++N +I G+A +G G EAI     M+  GI P
Sbjct: 434 AMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEP 493

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           + VT +G+L AC+H GL+E+G   F   K  DP +   +HYACMVDLL R G  ++AK  
Sbjct: 494 DRVTFIGVLTACSHAGLLEEGRKVFESIK--DPAI---DHYACMVDLLGRVGELEDAKRT 548

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           +  +P +P  G + +LL   +IH  VELGE AA ++  L+P++  ++++LSN  + AG+W
Sbjct: 549 MERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRW 608

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            +V  IR  MK+ G+ +  G SW+E   K+H F+  DR+H  +D+IY +L    +++RE
Sbjct: 609 KDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMRE 667



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 198/433 (45%), Gaps = 81/433 (18%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H +F+   + NV   T+++  ++    + + + +F  M    +RP  F +  +I S+   
Sbjct: 54  HLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG-- 111

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---------- 171
              N G   HA   K+G  S+ FV +A++D+Y +L  I  A +VF++  +          
Sbjct: 112 ---NGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNA 168

Query: 172 -----------------------PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
                                   NV+++T M+ G  K +  E A + F  MP R+VVSW
Sbjct: 169 MVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSW 228

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA----ALGMGKSFHA 264
           NAM+ GY+Q G  EE + LF EM+  G+ P+ +T    I A ++      A  + ++ H 
Sbjct: 229 NAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQ 288

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--------------------- 303
             +    +L+ FV  +L+  YAKCGS+  +  +FD+L                       
Sbjct: 289 KQI----QLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLD 344

Query: 304 -----------RNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWAC 351
                      RN+VTWN++I GYAQNG+   AIE F+ M     + P+ VT++ ++ AC
Sbjct: 345 SARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 404

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
            H G +E G ++  +   E+   L    +  M+ + SR G  ++AK    ++     + +
Sbjct: 405 GHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSY 463

Query: 412 WKALLGGCQIHSN 424
              L+ G   H +
Sbjct: 464 -NTLISGFAAHGH 475


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 170/516 (32%), Positives = 285/516 (55%), Gaps = 25/516 (4%)

Query: 25  PNYLIETQKASV--QKLETPAIRTDSVSCGSESDKF---------------SSVHQVFDE 67
           P +L   +  +V    L    +  D+  CG  SD F                   +VFD+
Sbjct: 165 PVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDD 224

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +   +VVS T++   + K     + + +F  M    ++P+  T  S++P+   L+DL  G
Sbjct: 225 LVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSG 284

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K++H +A + G+  N+FV SA++ LY K  S+ EA  VF+   + +VVS+  ++    K 
Sbjct: 285 KEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKN 344

Query: 188 ERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           + +E    LF +M    V     +WNA+IGG  + GR+EEAV +F +M + G  PN  T+
Sbjct: 345 KEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITI 404

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A +    L MGK  H    +     D+    +L+  YAKCG +  S  VFD +  
Sbjct: 405 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRR 464

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++V WN +I   A +G G+EA+  F++M ++ ++PN VT  G+L  C+H+ LVE+G   
Sbjct: 465 KDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQI 524

Query: 364 FSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F+    +   +++P+  HY+C+VD+ SR+GR  EA +F+  +P +P    W ALL  C++
Sbjct: 525 FNSMGRDH--LVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 582

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           + NVEL + +A+++  ++P +  +YV L N L  A  W   S +R  MKE+G+T+ PGCS
Sbjct: 583 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 642

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           W+++ +KVH FV GD+++  +D+IY  L    E+++
Sbjct: 643 WLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMK 678



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 66/332 (19%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F+   Q+FD +P  +  + +T+I          EAI ++S +    I+P    F +   +
Sbjct: 114 FNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKA 173

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                D    K++H  AT+ G+ S+VFVG+A++  Y K   +E A RVF+D         
Sbjct: 174 CAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDD--------- 224

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                 L+ R+                VVSW ++   Y + G   + +++F EM   G+ 
Sbjct: 225 ------LVVRD----------------VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 262

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T+   + A A +  L  GK  H  AV+    +++FV ++L+S YAKC S+ ++ +V
Sbjct: 263 PNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMV 322

Query: 298 FDKLTERNIV-----------------------------------TWNAVICGYAQNGRG 322
           FD +  R++V                                   TWNAVI G  +NGR 
Sbjct: 323 FDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRS 382

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           EEA+E F +M+  G +PN +T+  +L AC+ +
Sbjct: 383 EEAVEMFRKMQKMGFKPNEITISSILPACSFS 414


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 167/506 (33%), Positives = 280/506 (55%), Gaps = 4/506 (0%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           L  LS++ SL     I    A +     P ++T  V   +   + +    +FD++   +V
Sbjct: 129 LKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDV 188

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           V+ + +I  + +   + +A+ LF  M   N+ P E    +V+ +     +L+ GK +H +
Sbjct: 189 VTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDF 248

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             +  +  +  + SA++ +Y    S++ A  +FE     N+V+ T M+ G  K  + E+A
Sbjct: 249 IMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENA 308

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             +F +M  +++V W+AMI GY+++   +EA+NLF EM   G+ P+  T+   I A A++
Sbjct: 309 RSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHL 368

Query: 254 AALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            AL   K  H    K  F G L +   N+LI  YAKCGS+E +  +FDK+  +N+++W  
Sbjct: 369 GALDQAKWIHLFVDKNGFGGALPI--NNALIEMYAKCGSLERARRIFDKMPRKNVISWTC 426

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I  +A +G    A+ FF +M    I PNG+T +G+L+AC+H GLVE+G   F     E 
Sbjct: 427 MISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEH 486

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
               K  HY CMVDL  R+   +EA E +  +P  P +  W +L+  C++H  +ELGEFA
Sbjct: 487 NITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFA 546

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A+R+L LDP+   ++V LSN  + A +W++V  +R+ MK KG+++  GCS  E+ +++H 
Sbjct: 547 AKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHE 606

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIR 517
           F+  DR+H   DEIY  L     +++
Sbjct: 607 FLVADRSHKHADEIYEKLYEVVSKLK 632



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 180/366 (49%), Gaps = 12/366 (3%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ +P          +   ++    E+ + ++ RM    +    F+F  ++ + + ++ 
Sbjct: 78  VFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKS 137

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G ++H  A K+G  S+ FV + ++ +Y     I EA  +F+   + +VV+++ MI G
Sbjct: 138 LVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDG 197

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGG-YSQTGRNEEAVNL-FIEMLREGLVPNHS 241
             +   F DAL LF+EM + NV     M+    S  GR   A NL + +M+ + ++ N+ 
Sbjct: 198 YCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGR---AGNLSYGKMIHDFIMENNI 254

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKL---DVFVGNSLISFYAKCGSMEDSLLVF 298
            +   + +A        G      A+    K+   ++    ++++ Y+K G +E++  VF
Sbjct: 255 VVDPHLQSALVTMYASCGSM--DLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVF 312

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           +++ ++++V W+A+I GYA++   +EA+  F  M+  GI+P+ VT+L ++ AC H G ++
Sbjct: 313 NQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALD 372

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +             G   P + A ++++ ++ G  + A+     +P    I  W  ++  
Sbjct: 373 QAKWIHLFVDKNGFGGALPINNA-LIEMYAKCGSLERARRIFDKMPRKNVIS-WTCMISA 430

Query: 419 CQIHSN 424
             +H +
Sbjct: 431 FAMHGD 436



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           AL +F  +P       N  +   S++   E+ + ++  M  +GL  +  + P  + A + 
Sbjct: 75  ALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSR 134

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           + +L  G   H  A K     D FV   L+  YA CG + ++ L+FDK+  R++VTW+ +
Sbjct: 135 VKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIM 194

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           I GY Q+G   +A+  FE M+   + P+ + L  +L AC   G +  G
Sbjct: 195 IDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYG 242


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 169/469 (36%), Positives = 267/469 (56%), Gaps = 5/469 (1%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S  D  SSV  VF+ + + + +   ++I  +A+    E  +  +  M         FTF 
Sbjct: 117 SSGDIDSSV-SVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFP 175

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+ SS  L  + +GK +H    ++GLQ +++V ++++ LY K   I +A +VF++    
Sbjct: 176 FVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR 235

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +V S+  ++ G  K    + AL +F+ MP RN+VSW  MI GYSQ+G  ++A++LF EM+
Sbjct: 236 DVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMV 295

Query: 233 RE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           +E  G+ PN  T+   + A A ++ L  G+  H  A +     +  V  +L + YAKCGS
Sbjct: 296 KEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGS 355

Query: 291 MEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           + D+   FDKL   E+N++ WN +I  YA  G G +A+  F  M   GI+P+ +T  GLL
Sbjct: 356 LVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLL 415

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
             C+H+GLV+ G  YF+          + EHYAC+ DLL R+GR  EA + + ++P   G
Sbjct: 416 SGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAG 475

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W +LL  C+ H N+E+ E AAR++  L+PE+  +YV+LSN  + AG+W  V  +R  
Sbjct: 476 PSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAI 535

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +K +G  + PGCSWIEI  K H+F+ GD +H    EIY  L +  E+++
Sbjct: 536 VKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMK 584



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 35/269 (13%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P   ++  V    T L  L LG Q+HA     GLQ    VGS ++  Y     I+ +  V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F     P+ + +                               N+MI  Y++ G  E  V
Sbjct: 128 FNGIGEPSSLLF-------------------------------NSMIRAYARYGFAERTV 156

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
             +  M   G   ++ T P  + ++  + ++ MGK  H   ++   + D++V  SLI  Y
Sbjct: 157 ATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILY 216

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            KCG + D+  VFD +T R++ +WNA++ GY ++G  + A+  FERM    I    V+  
Sbjct: 217 GKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNI----VSWT 272

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
            ++   + +GL ++  S F +   ED G+
Sbjct: 273 TMISGYSQSGLAQQALSLFDEMVKEDSGV 301


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 266/460 (57%), Gaps = 37/460 (8%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
             ++D    ++VV  +T+I  +      EEA+ +F  +L   I+P+  T  SV+P   ++
Sbjct: 398 QNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASM 457

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L LG+Q+H +  +   +   +V SA++D+Y K                          
Sbjct: 458 AALPLGQQIHGYVLRNAYERKCYVESALMDMYAK-------------------------- 491

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG L    +     +F +M  ++ V+WN+MI  +SQ G+ +EA++LF +M  EG+  N+ 
Sbjct: 492 CGRLDLSHY-----IFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNI 546

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+  A+ A A++ A+  GK  H   +K   K D+F  ++LI  YAKCG++E +L VF+ +
Sbjct: 547 TISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFM 606

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ++N V+WN++I  Y  +G  +E++     M+  G +P+ VT L L+ AC H GLVE+G 
Sbjct: 607 PDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGV 666

Query: 362 SYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             F   ++  L  P M   EH+ACMVDL SRSG+  +A +F+ D+PF P  G W ALL  
Sbjct: 667 QLFQCMTKKYLIAPRM---EHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHA 723

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C++H NVEL + A++ +  LDP +   YV++SN  +VAG+WD VS +RR MK+  + ++P
Sbjct: 724 CRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIP 783

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G SW+++ +  H+FV  D++H  +++IY  L++  +++RE
Sbjct: 784 GYSWVDVNNSSHLFVASDKSHPESEDIYTSLKTLLQELRE 823



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 148/311 (47%), Gaps = 40/311 (12%)

Query: 57  KFSSVHQVFDEVPDLNVVSATT---IIGRF--AKQHHYEEAIYLFSRMLLLNIRPSE--F 109
           +F     VF  +P     S+     +I  F  A QHH   A+  + +M      PS    
Sbjct: 85  RFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHL--AVLFYVKMWSHPAAPSPDAH 142

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T   V+ S  AL  ++LG+ +H  A  +GL ++V+VGSA++ +Y                
Sbjct: 143 TLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYAD-------------- 188

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                        GLL   R  DA   F  +P R+ V WN M+ G  + G  + AV LF 
Sbjct: 189 ------------AGLLGNAR--DA---FDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFR 231

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            M   G  PN +TL C +   A  A L  G   H+ AVK   + +V V N+L++ YAKC 
Sbjct: 232 NMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQ 291

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++D+  +F+ + + ++VTWN +I G  QNG   EA   F  M+ +G RP+ +TL+ LL 
Sbjct: 292 CLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLP 351

Query: 350 ACNHTGLVEKG 360
           A      +++G
Sbjct: 352 ALTDLNGLKQG 362



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 129/299 (43%), Gaps = 31/299 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +++    +    FD +P+ + V    ++    K    + A+ LF  M      P+  T  
Sbjct: 187 ADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLA 246

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
             +       DL  G QLH+ A K GL+  V V + +L +Y K   +++A R+FE     
Sbjct: 247 CFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQD 306

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           ++V++  MI G +                               Q G   EA  LF +M 
Sbjct: 307 DLVTWNGMISGCV-------------------------------QNGLFVEAFGLFYDMQ 335

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R G  P+  TL   + A  ++  L  GK  H   V+    +DVF+ ++L+  Y KC  + 
Sbjct: 336 RSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVR 395

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            +  ++D     ++V  + +I GY  NG  EEA++ F  +    I+PN VT+  +L  C
Sbjct: 396 MAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGC 454


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 187/532 (35%), Positives = 296/532 (55%), Gaps = 22/532 (4%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIET--QKASVQKLETPAIR----TDSVSCG--- 52
           +QLL     SLS  K  KL    P Y +++    A +++  +  IR     D+ + G   
Sbjct: 4   LQLLQASPPSLSSAKAHKL----PLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVI 59

Query: 53  -----SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
                S+S   +   +VFD++P  +     TI   + +       I+++SRML  ++ P+
Sbjct: 60  KFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPN 119

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           +FT+  +I +      +  GKQ+HA   K G  ++ F  + ++ +Y+   S+E+A RVF+
Sbjct: 120 KFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFD 179

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           +    +VVS+T++I G  +    + A ++F+ MP RN VSWNAMI  Y Q+ R  EA  L
Sbjct: 180 NMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFAL 239

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F  M  E +V +       + A   + AL  GK  H    K   +LD  +  ++I  Y K
Sbjct: 240 FDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCK 299

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG +E +  VF++L ++ I +WN +I G A +G+GE AIE F+ M    + P+G+T + +
Sbjct: 300 CGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNV 359

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPF 405
           L AC H+GLVE+G  YF Q   E  G LKP  EH+ CMVDLL R+G  +EA++ + ++P 
Sbjct: 360 LSACAHSGLVEEGKHYF-QYMTEVLG-LKPGMEHFGCMVDLLGRAGLLEEARKLINEMPV 417

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
           +P  G   AL+G C+IH N ELGE   ++++ L+P +   YV+L+N  + AG+W++V+ +
Sbjct: 418 NPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKV 477

Query: 466 RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           R+ M ++G+ + PG S IE +S V  F+ G R H    EIYA L    E IR
Sbjct: 478 RKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIR 529


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 167/464 (35%), Positives = 269/464 (57%), Gaps = 35/464 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D        F+ +P+ ++++   II  +++     EA+ LF  M    I  ++ T  
Sbjct: 378 SKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLS 437

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++ S+  L+ +++ +Q+H  + K G  S+++V ++++D Y K S +E+A R+F      
Sbjct: 438 TILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIF------ 491

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                    +E    ++VS+ +MI  Y+Q G+ EEA+ LF+EM 
Sbjct: 492 -------------------------EECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ 526

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              L P+       + A AN++A   GK  H   +K+   LD+F GNSL++ YAKCGS++
Sbjct: 527 DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSID 586

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+   F +LTER IV+W+A+I G AQ+G G +A++ F +M   G+ PN +TL+ +L ACN
Sbjct: 587 DAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN 646

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLV +   YF    +E+    KP  EHYACM+DLL R+G+  EA E +  +PF+    
Sbjct: 647 HAGLVTEAKLYFES--MEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANAS 704

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALLG  +IH +VELG  AA  +  L+PE   ++V+L+N  + AGKW+NV+ +RR M+
Sbjct: 705 VWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMR 764

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTE 514
           +  + + PG SWIE+K KV+ F+ GDR+H+ + EIYA L   ++
Sbjct: 765 DSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSD 808



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 210/415 (50%), Gaps = 45/415 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++ D+F    ++FDE+P+ NVVS   +   + +     EA+ LF  M+L  I+P+EF+  
Sbjct: 203 AKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ + T L D + GK +H +  K+G   + F  +A++D+Y K+  + +A  VFE    P
Sbjct: 263 SMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP 322

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEM-------------------------------- 200
           ++VS+  +I G +  E  E AL+L  +M                                
Sbjct: 323 DIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL 382

Query: 201 -----------PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
                      P +++++WNA+I GYSQ   + EA++LF+EM +EG+  N +TL   + +
Sbjct: 383 LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKS 442

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A +  + + +  H  +VK     D++V NSLI  Y KC  +ED+  +F++ T  ++V++
Sbjct: 443 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSF 502

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
            ++I  YAQ G+GEEA++ F  M+   ++P+      LL AC +    E+G        L
Sbjct: 503 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHI-L 561

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
           +   +L       +V++ ++ G   +A     +L  + GI  W A++GG   H +
Sbjct: 562 KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQHGH 615



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 150/320 (46%), Gaps = 31/320 (9%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           L++     SL P   I          + P+IR   ++  S+   F    ++ DE  + ++
Sbjct: 63  LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDL 122

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS + +I  +A+      A+  F  M LL ++ +EFTF SV+ + + ++DL +GKQ+H  
Sbjct: 123 VSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGV 182

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
               G + +VFV + ++ +Y K     ++ R+F++    NVVS                 
Sbjct: 183 VVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVS----------------- 225

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
                         WNA+   Y Q     EAV LF EM+  G+ PN  +L   + A   +
Sbjct: 226 --------------WNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGL 271

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
                GK  H   +K     D F  N+L+  YAK G + D++ VF+K+ + +IV+WNAVI
Sbjct: 272 RDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVI 331

Query: 314 CGYAQNGRGEEAIEFFERMR 333
            G   +   E+A+E   +M+
Sbjct: 332 AGCVLHEHHEQALELLGQMK 351



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 159/357 (44%), Gaps = 40/357 (11%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           N  P+  ++  ++      + L  G Q+HA  TK GL  +  + + +++LY K      A
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYA 110

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            ++ +++  P++VS                               W+A+I GY+Q G   
Sbjct: 111 RKLVDESSEPDLVS-------------------------------WSALISGYAQNGLGG 139

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
            A+  F EM   G+  N  T    + A + +  L +GK  H   V    + DVFV N+L+
Sbjct: 140 GALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLV 199

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKC    DS  +FD++ ERN+V+WNA+   Y Q     EA+  F  M ++GI+PN  
Sbjct: 200 VMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEF 259

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLY 401
           +L  ++ AC  TGL +          L   G    P     +VD+ ++ G   +A     
Sbjct: 260 SLSSMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVE-----LGEFAARRILALDPEDVSSYVMLSNAL 453
            +   P I  W A++ GC +H + E     LG+   +   +L   D+ S + +S  L
Sbjct: 318 KIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGL 373


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 268/455 (58%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFDE+    +V  T II  +      E+A+ LF  M  + + P      +V+ +   L 
Sbjct: 147 QVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLG 206

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL + K +H +  K G++ + FV S ++  Y +  S++ A R F++T   N+V + TMI 
Sbjct: 207 DLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIH 266

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
             ++    E   +LFQ MP R+VVSWN+MIGG+++ G+ +EA+  F EM   G+ PN  T
Sbjct: 267 QSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALT 326

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+  AL  G   HA   K     D  + +SLI  Y+KCG ++ ++ +F++ T
Sbjct: 327 LLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEEST 386

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R++ TW +++CG A +GRGE+A+ +F +M+   ++P+ VT++G+L AC H GL+++G+ 
Sbjct: 387 RRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWW 446

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF   +     + K EHY CMVDLL R G  KEA + +  +P +     W A L  C++H
Sbjct: 447 YFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVH 506

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
           +NVELGE AARR+L LDP D  + VMLSN  +   KWD    +R+E+K+KG+ + PGCS 
Sbjct: 507 NNVELGEVAARRLLGLDPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSS 566

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           IE+   VH F+ GD +H    EI +++    + +R
Sbjct: 567 IEVNGSVHGFLVGDNSHPCYTEINSMVEKIEKLMR 601



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 186/408 (45%), Gaps = 73/408 (17%)

Query: 90  EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAI 149
           +  +  + + L   +RP+  TF  ++ +  + +++  G+++HA   + G   + FV  A+
Sbjct: 73  DPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGAL 132

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           L  Y+    + +  +VF++   P +V +T +I   +     E AL+LF+ M  R V    
Sbjct: 133 LGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTM--REV---- 186

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
                                    GL P+   +   + A   +  LG+ K+ H    K 
Sbjct: 187 -------------------------GLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKS 221

Query: 270 LGKLDVFVGNSLISFYAKCGSME-----------------DSLL--------------VF 298
             ++D FV ++LIS Y +CGS++                 ++++              +F
Sbjct: 222 GIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLF 281

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
             + +R++V+WN++I G+A+ G+ +EA+ +F  M  +G+ PN +TLL  L AC   G ++
Sbjct: 282 QSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALD 341

Query: 359 KG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            G   ++Y  +  +   G L     + ++D+ S+ G   +A + +++      +  W ++
Sbjct: 342 TGAWIHAYVDKNDMNRDGSLD----SSLIDMYSKCGDIDKAVQ-IFEESTRRDLFTWTSI 396

Query: 416 LGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
           + G  +H   E  L  F+  +   + P+DV+   +LS A + AG  D 
Sbjct: 397 VCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLS-ACAHAGLLDQ 443



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 118/277 (42%), Gaps = 13/277 (4%)

Query: 204 NVVSWNAMIGGYSQTG--RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
           NV  WN MI    + G    +  +  +++ LR GL PN  T    + A  +   +  G+ 
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            HA  V+       FV  +L+ FY  CG +     VFD++ +  +V W  +I  Y     
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWAC---NHTGLVEKGYSYFSQAKLEDPGMLKPE 378
            E+A+E F  MR  G+ P+ V +  ++ AC      G+ +  + +  ++ +E    +   
Sbjct: 173 PEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVS-- 230

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
             + ++      G    A  F  + P    I  W  ++     H+N+ELG+   +   ++
Sbjct: 231 --STLISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELGK---QLFQSM 284

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
              DV S+  +    +  G++        EM+  G++
Sbjct: 285 PDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVS 321


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 167/464 (35%), Positives = 269/464 (57%), Gaps = 35/464 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D        F+ +P+ ++++   II  +++     EA+ LF  M    I  ++ T  
Sbjct: 405 SKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLS 464

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++ S+  L+ +++ +Q+H  + K G  S+++V ++++D Y K S +E+A R+       
Sbjct: 465 TILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERI------- 517

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                   F+E    ++VS+ +MI  Y+Q G+ EEA+ LF+EM 
Sbjct: 518 ------------------------FEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ 553

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              L P+       + A AN++A   GK  H   +K+   LD+F GNSL++ YAKCGS++
Sbjct: 554 DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSID 613

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+   F +LTER IV+W+A+I G AQ+G G +A++ F +M   G+ PN +TL+ +L ACN
Sbjct: 614 DAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN 673

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLV +   YF    +E+    KP  EHYACM+DLL R+G+  EA E +  +PF+    
Sbjct: 674 HAGLVTEAKLYFES--MEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANAS 731

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALLG  +IH +VELG  AA  +  L+PE   ++V+L+N  + AGKW+NV+ +RR M+
Sbjct: 732 VWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMR 791

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTE 514
           +  + + PG SWIE+K KV+ F+ GDR+H+ + EIYA L   ++
Sbjct: 792 DSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSD 835



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 192/407 (47%), Gaps = 37/407 (9%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           L++     SL P   I          + P+IR   ++  S+   F    ++ DE  + ++
Sbjct: 63  LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDL 122

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS + +I  +A+      A+  F  M LL ++ +EFTF SV+ + + ++DL +GKQ+H  
Sbjct: 123 VSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGV 182

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
               G + +VFV + ++ +Y K                                + F D+
Sbjct: 183 VVVSGFEGDVFVANTLVVMYAKC-------------------------------DEFLDS 211

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
            +LF E+P RNVVSWNA+   Y Q     EAV LF EM+  G+ PN  +L   + A   +
Sbjct: 212 KRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGL 271

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
                GK  H   +K     D F  N+L+  YAK G + D++ VF+K+ + +IV+WNAVI
Sbjct: 272 RDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVI 331

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            G   +   E+A+E   +M+ +GI PN  TL   L AC   GL E G    S     D  
Sbjct: 332 AGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMD-- 389

Query: 374 MLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            ++ + +    +VD+ S+    ++A+     LP    I  W A++ G
Sbjct: 390 -MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIA-WNAIISG 434



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 207/457 (45%), Gaps = 65/457 (14%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++ D+F    ++FDE+P+ NVVS   +   + +     EA+ LF  M+L  I+P+EF+  
Sbjct: 203 AKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ + T L D + GK +H +  K+G   + F  +A++D+Y K+  + +A  VFE    P
Sbjct: 263 SMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP 322

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +                               +VSWNA+I G      +E+A+ L  +M 
Sbjct: 323 D-------------------------------IVSWNAVIAGCVLHEHHEQALELLGQMK 351

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R G+ PN  TL  A+ A A +    +G+  H+  +K   + D+FV   L+  Y+KC  +E
Sbjct: 352 RSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 411

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL-------- 344
           D+ + F+ L E++++ WNA+I GY+Q     EA+  F  M   GI  N  TL        
Sbjct: 412 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA 471

Query: 345 -LGLLWACN--HTGLVEKGY------------SYFSQAKLEDPGMLKPE-------HYAC 382
            L ++  C   H   V+ G+            SY   + +ED   +  E        +  
Sbjct: 472 GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTS 531

Query: 383 MVDLLSRSGRFKEA-KEFL--YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
           M+   ++ G+ +EA K FL   D+   P      +LL  C   S  E G+     IL   
Sbjct: 532 MITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYG 591

Query: 440 -PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
              D+ +   L N  +  G  D+      E+ E+G+ 
Sbjct: 592 FVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIV 628



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 147/325 (45%), Gaps = 35/325 (10%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           N  P+  ++  ++      + L  G Q+HA  TK GL  +  + + +++LY K  +   A
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYA 110

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            ++ +++  P++VS                               W+A+I GY+Q G   
Sbjct: 111 RKLVDESSEPDLVS-------------------------------WSALISGYAQNGLGG 139

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
            A+  F EM   G+  N  T    + A + +  L +GK  H   V    + DVFV N+L+
Sbjct: 140 GALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLV 199

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKC    DS  +FD++ ERN+V+WNA+   Y Q     EA+  F  M ++GI+PN  
Sbjct: 200 VMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEF 259

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLY 401
           +L  ++ AC  TGL +          L   G    P     +VD+ ++ G   +A     
Sbjct: 260 SLSSMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVE 426
            +   P I  W A++ GC +H + E
Sbjct: 318 KIK-QPDIVSWNAVIAGCVLHEHHE 341



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
           F+ A KL Q +P             +SQ  +    +NL   + +    P   +    +  
Sbjct: 21  FKPAPKLIQTVPQ------------FSQDPQTTAILNL---IDKGNFTPTSVSYSKLLSQ 65

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
                +L  G   HA   K     D  + N LI+ Y+KC +   +  + D+ +E ++V+W
Sbjct: 66  CCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSW 125

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           +A+I GYAQNG G  A+  F  M + G++ N  T   +L AC+
Sbjct: 126 SALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 267/465 (57%), Gaps = 36/465 (7%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V CG+  D       V D +P+ +VVS TT+I  +++   + EA+ LF +ML     
Sbjct: 85  TMYVRCGALDD----ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCI 140

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+E+T  +V+ S +  + +  GKQ+H+   K   +S++FVGS++LD+Y K  +I+EA RV
Sbjct: 141 PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRV 200

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F DT                              +P R+VVS  A+I GY+Q G +EEA+
Sbjct: 201 F-DT------------------------------LPERDVVSCTAIISGYAQKGLDEEAL 229

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           +LF ++  EG+  NH T    + A + +A+L  GK  HA  ++      V + NSLI  Y
Sbjct: 230 DLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMY 289

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           +KCG +  S  VFD + ER++V+WNA++ GY ++G G E I  F+ +    ++P+ VTLL
Sbjct: 290 SKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLL 348

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            +L  C+H GLV++G   F     E   +L   HY C++DLL RSGR ++A   + ++PF
Sbjct: 349 AVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPF 408

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
           +     W +LLG C++H+NV +GE  A+++L ++PE+  +YV+LSN  + AG W +V  +
Sbjct: 409 ESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKV 468

Query: 466 RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           R+ M EK +T+ PG SWI +   +H F + +R H    +I A ++
Sbjct: 469 RKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIK 513



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 154/299 (51%), Gaps = 39/299 (13%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+Q+HA       +  VF+G+ ++ +Y++                          CG L 
Sbjct: 61  GRQVHARMITARYRPAVFLGTRLVTMYVR--------------------------CGAL- 93

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
               +DA  +   MP R+VVSW  MI GYSQT R+ EA++LFI+MLR G +PN  TL   
Sbjct: 94  ----DDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATV 149

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + + +   ++  GK  H+  VK   +  +FVG+SL+  YAK  +++++  VFD L ER++
Sbjct: 150 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDV 209

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           V+  A+I GYAQ G  EEA++ F ++   G++ N VT   L+ A   +GL    Y     
Sbjct: 210 VSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTAL--SGLASLDYGKQVH 267

Query: 367 A---KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           A   + E P  +  ++   ++D+ S+ G+   ++  ++D   +  +  W A+L G   H
Sbjct: 268 ALILRKELPFFVALQN--SLIDMYSKCGKLLYSRR-VFDNMLERSVVSWNAMLMGYGRH 323



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
           AI A     AL  G+  HA  +    +  VF+G  L++ Y +CG+++D+  V D++ ER+
Sbjct: 48  AITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERS 107

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YS 362
           +V+W  +I GY+Q  R  EA++ F +M   G  PN  TL  +L +C+    + +G   +S
Sbjct: 108 VVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHS 167

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
              +   E    +     + ++D+ ++S   +EA+     LP
Sbjct: 168 LLVKTNFESHMFVG----SSLLDMYAKSENIQEARRVFDTLP 205


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 173/472 (36%), Positives = 263/472 (55%), Gaps = 19/472 (4%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VSCG          ++FD+    ++VS  ++I  + ++    EA+  +  M +  I+P E
Sbjct: 125 VSCGD----LDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 180

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T   V+ S   LEDL+LG++ H +  + GL+  V + +A++D+Y+K  ++E A ++F+ 
Sbjct: 181 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDS 240

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
             N  +VS+TTM               LF EMP ++VV WNAMIGGY    R +EA+ LF
Sbjct: 241 MTNKTMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 285

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM    + P+  T+   + A + + AL +G   H    K    L+V +G +LI  YAKC
Sbjct: 286 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 345

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +  ++ VF +L  RN +TW A+I G A +G    AI +F  M  N + P+ VT LGLL
Sbjct: 346 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 405

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC H GLVE+G  YFSQ   +     K +HY+CMVDLL R+G  +EA+E +  +P +  
Sbjct: 406 SACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEAD 465

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W AL   C+IH NV +GE AA ++L +DP D   YV+L+N    A  W      R+ 
Sbjct: 466 AVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKL 525

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           M+++G+ + PGCS IE+   V+ F+  D++H  +++IY  L   T Q+   E
Sbjct: 526 MRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLELVE 577



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 190/402 (47%), Gaps = 60/402 (14%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQL 130
           N  S    I  F    +  EA+ L+ R+L  +  +P  +T+  +  +   L  + +G ++
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
                 +G  S++FV +A++ L +    ++ A ++F+ +   ++VS+ +MI G ++R   
Sbjct: 102 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRR--- 158

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
                                       G   EA+N + EM  EG+ P+  T+   + + 
Sbjct: 159 ----------------------------GWAYEALNFYREMKVEGIKPDEVTMIGVVSSC 190

Query: 251 ANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSME------DSL-------- 295
           A +  L +G+  H C ++  G KL V + N+L+  Y KCG++E      DS+        
Sbjct: 191 AQLEDLDLGRESH-CYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSW 249

Query: 296 --LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
             ++FD++ ++++V WNA+I GY    RG+EA+  F  M+   I P+ VT++  L AC+ 
Sbjct: 250 TTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQ 309

Query: 354 TGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            G ++ G   + Y  + +L     L       ++D+ ++ G+  +A +   +LP    + 
Sbjct: 310 LGALDVGIWIHHYIEKHELS----LNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLT 365

Query: 411 FWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
            W A++ G  +H N    +  F+     ++ P++V+   +LS
Sbjct: 366 -WTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLS 406



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 136/277 (49%), Gaps = 24/277 (8%)

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           N  SWN  I G+  +    EAV L+  +L+ +G  P++ T P    A A ++ + MG   
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
               +      D+FV N++I     CG ++ +  +FDK   R++V+WN++I GY + G  
Sbjct: 102 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 161

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYA 381
            EA+ F+  M++ GI+P+ VT++G++ +C     ++ G    S   +E+ G+ L      
Sbjct: 162 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRE--SHCYIEENGLKLTVPLAN 219

Query: 382 CMVDLLSRSGRFKEAKEF---------------LYDLPFDPGIGFWKALLGGCQIHSNV- 425
            ++D+  + G  + A++                L+D   D  +  W A++GG  +H+N  
Sbjct: 220 ALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGG-YVHANRG 278

Query: 426 --ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
              L  F   + + ++P++V+    LS A S  G  D
Sbjct: 279 KEALALFNEMQAMNINPDEVTMVSCLS-ACSQLGALD 314



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 26  NYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           ++ IE  + S+      A+      CG    K +   QVF E+P  N ++ T II   A 
Sbjct: 320 HHYIEKHELSLNVALGTALIDMYAKCG----KITKAIQVFQELPGRNSLTWTAIISGLAL 375

Query: 86  QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA-WATKVGLQSNVF 144
             +   AI  FS M+  ++ P E TF  ++ +      +  G++  +  ++K  L   + 
Sbjct: 376 HGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLK 435

Query: 145 VGSAILDLYIKLSSIEEATRVFE 167
             S ++DL  +   +EEA  + +
Sbjct: 436 HYSCMVDLLGRAGLLEEAEELIK 458


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 170/516 (32%), Positives = 285/516 (55%), Gaps = 25/516 (4%)

Query: 25  PNYLIETQKASV--QKLETPAIRTDSVSCGSESDKF---------------SSVHQVFDE 67
           P +L   +  +V    L    +  D+  CG  SD F                   +VFD+
Sbjct: 79  PVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDD 138

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +   +VVS T++   + K     + + +F  M    ++P+  T  S++P+   L+DL  G
Sbjct: 139 LVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSG 198

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K++H +A + G+  N+FV SA++ LY K  S+ EA  VF+   + +VVS+  ++    K 
Sbjct: 199 KEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKN 258

Query: 188 ERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           + +E    LF +M    V     +WNA+IGG  + GR+EEAV +F +M + G  PN  T+
Sbjct: 259 KEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITI 318

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A +    L MGK  H    +     D+    +L+  YAKCG +  S  VFD +  
Sbjct: 319 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRR 378

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++V WN +I   A +G G+EA+  F++M ++ ++PN VT  G+L  C+H+ LVE+G   
Sbjct: 379 KDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQI 438

Query: 364 FSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F+    +   +++P+  HY+C+VD+ SR+GR  EA +F+  +P +P    W ALL  C++
Sbjct: 439 FNSMGRDH--LVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 496

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           + NVEL + +A+++  ++P +  +YV L N L  A  W   S +R  MKE+G+T+ PGCS
Sbjct: 497 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 556

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           W+++ +KVH FV GD+++  +D+IY  L    E+++
Sbjct: 557 WLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMK 592



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 66/332 (19%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F+   Q+FD +P  +  + +T+I          EAI ++S +    I+P    F +   +
Sbjct: 28  FNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKA 87

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                D    K++H  AT+ G+ S+VFVG+A++  Y K   +E A RVF+D         
Sbjct: 88  CAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDD--------- 138

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                 L+ R+                VVSW ++   Y + G   + +++F EM   G+ 
Sbjct: 139 ------LVVRD----------------VVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 176

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T+   + A A +  L  GK  H  AV+    +++FV ++L+S YAKC S+ ++ +V
Sbjct: 177 PNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMV 236

Query: 298 FDKLTERNIV-----------------------------------TWNAVICGYAQNGRG 322
           FD +  R++V                                   TWNAVI G  +NGR 
Sbjct: 237 FDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRS 296

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           EEA+E F +M+  G +PN +T+  +L AC+ +
Sbjct: 297 EEAVEMFRKMQKMGFKPNEITISSILPACSFS 328


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 168/451 (37%), Positives = 261/451 (57%), Gaps = 37/451 (8%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           ++VF+ + + ++VS   ++  F           +F +MLL   +P+ FTF SV+ S ++L
Sbjct: 207 NKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSL 266

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D   GKQ+HA   K     + FVG+A++D+Y K   +E+A   F+              
Sbjct: 267 LDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFD-------------- 312

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                             + +R++ SW  +I GY+QT + E+AV  F +M REG+ PN  
Sbjct: 313 -----------------RLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEY 355

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   +   +++A L  G+  HA AVK     D+FVG++L+  Y KCG ME +  +F  L
Sbjct: 356 TLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL 415

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             R+IV+WN +I GY+Q+G+GE+A+E F  M   GI P+  T +G+L AC+  GLVE+G 
Sbjct: 416 ISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGK 475

Query: 362 SYF-SQAKLE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             F S +K+   +P +   EHYACMVD+L R+G+F E K F+ ++   P    W+ +LG 
Sbjct: 476 KRFDSMSKIYGINPSI---EHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGA 532

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C++H NV+ GE AA+++  ++P   SSY++LSN  +  G+WD+V NIR  M  +G+ + P
Sbjct: 533 CKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEP 592

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           GCSW+E+  +VHVF++ D +H    EIYA L
Sbjct: 593 GCSWVEVDGQVHVFLSQDGSHPKIREIYAKL 623



 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 203/430 (47%), Gaps = 59/430 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+  D      +VF ++ + +VV+ + +I    +Q H +EA  LF  M     RP++FT
Sbjct: 99  CGTVYDAL----KVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFT 154

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             S++ ++T + DL  G+ +H    K G +S+  V + ++ +Y+K   +E          
Sbjct: 155 LSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVE---------- 204

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                D  K+F+ M + ++VSWNA++ G+  +        +F +
Sbjct: 205 ---------------------DGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           ML EG  PN  T    + + +++     GK  HA  +K     D FVG +L+  YAK   
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARC 303

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +ED+ + FD+L  R+I +W  +I GYAQ  + E+A+++F +M+  GI+PN  TL   L  
Sbjct: 304 LEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSG 363

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHY------ACMVDLLSRSGRFKEAKEFLYDLP 404
           C+H   +E G    + A       +K  H+      + +VDL  + G  + A+     L 
Sbjct: 364 CSHMATLENGRQLHAVA-------VKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL- 415

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILA--LDPEDVSSYVMLSNALSVAG----- 457
               I  W  ++ G   H   E    A R +L+  + P D ++++ + +A S  G     
Sbjct: 416 ISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMP-DEATFIGVLSACSFMGLVEEG 474

Query: 458 --KWDNVSNI 465
             ++D++S I
Sbjct: 475 KKRFDSMSKI 484



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 139/290 (47%), Gaps = 31/290 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F  +P+ N VS   ++  +A+    ++ + LF +M     + S+FT  +V+       
Sbjct: 6   RLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTG 65

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GK LHA A + G + + F+G +++D+Y K  ++ +A +VF    NP+VV+++ MI 
Sbjct: 66  SLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMIT 125

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL                                Q G  +EA  LF  M R+G  PN  T
Sbjct: 126 GL-------------------------------DQQGHGQEAAELFHLMRRKGARPNQFT 154

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   +  A N+  L  G+S H C  K+  + D  V N LI  Y K   +ED   VF+ +T
Sbjct: 155 LSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT 214

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
             ++V+WNA++ G+  +         F +M + G +PN  T + +L +C+
Sbjct: 215 NPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCS 264



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 20/237 (8%)

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
           E A +LF  MP +N VSWNA++ GY+Q G  ++ + LF +M       +  TL   +   
Sbjct: 2   ELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGC 61

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           AN  +L  GK  HA A++   ++D F+G SL+  Y+KCG++ D+L VF K+   ++V W+
Sbjct: 62  ANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWS 121

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---------Y 361
           A+I G  Q G G+EA E F  MR  G RPN  TL  L+    + G +  G         Y
Sbjct: 122 AMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKY 181

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            + S   + +P           + ++    R  E    +++   +P +  W ALL G
Sbjct: 182 GFESDNLVSNP-----------LIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSG 227



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 4/129 (3%)

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ME +  +F  + E+N V+WNA++ GYAQ G G++ ++ F +M+    + +  TL  +L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C +TG + +G    + A     G    E   C +VD+ S+ G   +A +    +  +P +
Sbjct: 61  CANTGSLREGKVLHALAL--RSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIR-NPDV 117

Query: 410 GFWKALLGG 418
             W A++ G
Sbjct: 118 VAWSAMITG 126


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 168/469 (35%), Positives = 268/469 (57%), Gaps = 36/469 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG+  D       V D +P+ +VVS TT+I  +++   + EA+ LF +ML     P+E
Sbjct: 56  VRCGALDD----ARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNE 111

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +T  +V+ S +  + +  GKQ+H+   K   +S++FVGS++LD+Y K  +I+EA RVF D
Sbjct: 112 YTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVF-D 170

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           T                              +P R+VVS  A+I GY+Q G +EEA++LF
Sbjct: 171 T------------------------------LPERDVVSCTAIISGYAQKGLDEEALDLF 200

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            ++  EG+  NH T    + A + +A+L  GK  HA  ++      V + NSLI  Y+KC
Sbjct: 201 RQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKC 260

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +  S  VFD + ER++V+WNA++ GY ++G G E I  F+ +    ++P+ VTLL +L
Sbjct: 261 GKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVL 319

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
             C+H GLV++G   F     E   +L   HY C++DLL RSGR ++A   + ++PF+  
Sbjct: 320 SGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFEST 379

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W +LLG C++H+NV +GE  A+++L ++PE+  +YV+LSN  + AG W +V  +R+ 
Sbjct: 380 PSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKL 439

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M EK +T+ PG SWI +   +H F + +R H    +I A ++     I+
Sbjct: 440 MLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIK 488



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 154/299 (51%), Gaps = 39/299 (13%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+Q+HA       +  VF+G+ ++ +Y++                          CG L 
Sbjct: 29  GRQVHARMITARYRPAVFLGTRLVTMYVR--------------------------CGAL- 61

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
               +DA  +   MP R+VVSW  MI GYSQT R+ EA++LFI+MLR G +PN  TL   
Sbjct: 62  ----DDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATV 117

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + + +   ++  GK  H+  VK   +  +FVG+SL+  YAK  +++++  VFD L ER++
Sbjct: 118 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDV 177

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           V+  A+I GYAQ G  EEA++ F ++   G++ N VT   L+ A   +GL    Y     
Sbjct: 178 VSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTAL--SGLASLDYGKQVH 235

Query: 367 A---KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           A   + E P  +  ++   ++D+ S+ G+   ++  ++D   +  +  W A+L G   H
Sbjct: 236 ALILRKELPFFVALQN--SLIDMYSKCGKLLYSRR-VFDNMLERSVVSWNAMLMGYGRH 291



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
           AI A     AL  G+  HA  +    +  VF+G  L++ Y +CG+++D+  V D++ ER+
Sbjct: 16  AITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERS 75

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YS 362
           +V+W  +I GY+Q  R  EA++ F +M   G  PN  TL  +L +C+    + +G   +S
Sbjct: 76  VVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHS 135

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
              +   E    +     + ++D+ ++S   +EA+     LP
Sbjct: 136 LLVKTNFESHMFVG----SSLLDMYAKSENIQEARRVFDTLP 173


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 270/493 (54%), Gaps = 37/493 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F    +VF  +P+ NV     +I    + +   +AIY + RM++ + RP++FT+ ++  +
Sbjct: 83  FDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKA 141

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSA----------------------------- 148
            +  + +  G+Q+H    K G+ S+V + SA                             
Sbjct: 142 CSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWN 201

Query: 149 -ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
            ++D Y+K   +E A  +F      N+ S+  MI GL K     DA KLF EM  R+ +S
Sbjct: 202 TMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEIS 261

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           W++M+ GY   GR +EA+ +F +M RE   P    L   + A +NI A+  G+  HA   
Sbjct: 262 WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLK 321

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           +   KLD  +G +L+  YAKCG ++    VF+++ ER I TWNA+I G A +GR E+A+E
Sbjct: 322 RNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALE 381

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL---EDPGMLKPEHYACMV 384
            F +++   ++PNG+TL+G+L AC H G V+KG   F   +     DP +   EHY CMV
Sbjct: 382 LFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPEL---EHYGCMV 438

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444
           DLL RSG F EA++ +  +P  P    W ALLG C+IH N +L E   + +L L+P++  
Sbjct: 439 DLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSG 498

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDE 504
            YV+LSN  +  G++D+VS IR+ MK++G+  VPG S +++   VH F  GD +H    E
Sbjct: 499 RYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKE 558

Query: 505 IYAVLRSCTEQIR 517
           IY  L+   E+++
Sbjct: 559 IYRKLKIIKERLQ 571



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 185/428 (43%), Gaps = 79/428 (18%)

Query: 105 RPSEFTFGSVIPSST-------------ALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           +P +F+    IP+S              ++  L    QLH    + G   + +V  A+L 
Sbjct: 14  KPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLK 73

Query: 152 LYIK--LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP-------- 201
            Y     S+ + A +VF    NPNV  +  +I G L+  +   A+  +  M         
Sbjct: 74  CYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKF 133

Query: 202 ---------------------HRNVVSW---------NAMIGGYSQTGRNEEAVNLFIEM 231
                                H +VV           +A I  Y+  GR E+A  +F   
Sbjct: 134 TYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSG 193

Query: 232 LREGLVPN---HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             + +  N      L C ++ AA     G+   F    VK +G  +V     +I+  AK 
Sbjct: 194 ESDVVCWNTMIDGYLKCGVLEAAK----GL---FAQMPVKNIGSWNV-----MINGLAKG 241

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G++ D+  +FD+++ER+ ++W++++ GY   GR +EA+E F++M+    RP    L  +L
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 349 WACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            AC++ G +++G   ++Y  +  ++   +L       ++D+ ++ GR     E   ++  
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLG----TALLDMYAKCGRLDMGWEVFEEMK- 356

Query: 406 DPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           +  I  W A++GG  IH   E  L  F+  +   + P  ++   +L+ A + AG  D   
Sbjct: 357 EREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLT-ACAHAGFVDKGL 415

Query: 464 NIRREMKE 471
            I + M+E
Sbjct: 416 RIFQTMRE 423



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 80/148 (54%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++        ++FDE+ + + +S ++++  +     Y+EA+ +F +M     RP  F   
Sbjct: 239 AKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILS 298

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ + + +  ++ G+ +HA+  +  ++ +  +G+A+LD+Y K   ++    VFE+    
Sbjct: 299 SVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKER 358

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEM 200
            + ++  MI GL    R EDAL+LF ++
Sbjct: 359 EIFTWNAMIGGLAIHGRAEDALELFSKL 386


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 292/520 (56%), Gaps = 65/520 (12%)

Query: 30  ETQKASVQKLET---PAI--RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFA 84
           E Q+     ++T   P++  RT  +   ++ D     H VFDE+P+ NVVS T +I  ++
Sbjct: 261 EGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYS 320

Query: 85  KQHHYEEAIYLF--------------SRMLLLN-------IRPSEFTFGSVIPSSTALED 123
           ++ +  +A+ LF               ++ L N         P+EFTF +V+ S T+   
Sbjct: 321 QRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLG 380

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             LG+Q+H+   K+  + +VFVGS++LD+Y K   I EA  VFE              C 
Sbjct: 381 FILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFE--------------C- 425

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                           +P R+VVS  A+I GY+Q G +EEA+ LF  +  EG+  N+ T 
Sbjct: 426 ----------------LPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTY 469

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A + +AAL +GK  H   ++      V + NSLI  Y+KCG++  S  +FD + E
Sbjct: 470 TGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYE 529

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           R +++WNA++ GY+++G G E ++ F  MR    ++P+ VT+L +L  C+H GL +KG +
Sbjct: 530 RTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLN 589

Query: 363 YF---SQAKLE-DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            F   S  K+E +P M   EHY C+VDLL RSGR +EA EF+  +PF+P    W +LLG 
Sbjct: 590 IFNDMSSGKIEVEPKM---EHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGA 646

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C++HSNV++GEFA +++L ++P +  +YV+LSN  + AG+W++VS++R  M +K +T+ P
Sbjct: 647 CRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEP 706

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G S IE+   +H F   DR+H   +EI   ++  +   +E
Sbjct: 707 GRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKE 746


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/448 (37%), Positives = 254/448 (56%), Gaps = 35/448 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FDE+   + VS   II    +     + +  F  ML   + P EFT+GSV+ +      
Sbjct: 416 LFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRA 475

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            + G ++H    K G+   +FVGSA++D+Y K                          CG
Sbjct: 476 FSNGMEVHGRIIKSGMGLKMFVGSALVDMYSK--------------------------CG 509

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           ++     E+A K+   +  + +VSWNA+I G+S   ++E++   F  ML  G+ P++ T 
Sbjct: 510 MM-----EEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTY 564

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A +G+GK  HA  +K     DV++ ++L+  Y+KCG+M DSLL+F K  +
Sbjct: 565 ATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPK 624

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ VTWNA+ICG+A +G GEEA+E FE M    I+PN  T + +L AC+H G  +KG  Y
Sbjct: 625 RDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFY 684

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F   K+     L+P  EHY+CMVD+L RSG+ +EA   + D+PF+     W+ LL  C+I
Sbjct: 685 FQ--KMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKI 742

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
             NVE+ E AA  +L LDPED S+Y +LSN  + AG W  VS IR+ M+   + + PGCS
Sbjct: 743 QGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCS 802

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           WIE+K +VH F+  D+ H   + IY++L
Sbjct: 803 WIEVKDEVHTFLVCDKAHPKCEMIYSLL 830



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 172/350 (49%), Gaps = 7/350 (2%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF  +    +    L  GK+ HA     G    VFV + ++ +Y+K  ++E A +VFE+ 
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNEEAVNLF 228
              ++VS+ TM+ G     R E A  +F  MPH  +VVSWN++I GY Q G  ++++ +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           ++M   G++ +H+TL  ++   + +    +G   H  AV+     DV  G++L+  YAKC
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            S+EDSL VF +L ++N ++W+A I G  QN +    ++ F+ M+  GI  +  T   + 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            +C        G      A   D G       A + D+ ++     +A +    LP D  
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATL-DMYAKCDNMSDAYKLFSLLP-DHN 323

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS-SYVMLSNALSVAG 457
           +  + A++ G   ++  E G  A +  L L     S   V LS ALS A 
Sbjct: 324 LQSYNAMIIG---YARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAA 370



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 177/391 (45%), Gaps = 42/391 (10%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T ++   ++ D  S  +++F  +PD N+ S   +I  +A+     +A  LF ++   +
Sbjct: 295 VGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNS 354

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
               E +    + ++  ++  + G QLH  A K  L SN+ V +AILD+Y K  ++ EA+
Sbjct: 355 FSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEAS 414

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                                           LF EM  R+ VSWNA+I    Q     +
Sbjct: 415 -------------------------------GLFDEMEIRDPVSWNAIITACEQNESEGK 443

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            ++ F  MLR  + P+  T    + A A   A   G   H   +K    L +FVG++L+ 
Sbjct: 444 TLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVD 503

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCG ME++  +  +L E+ +V+WNA+I G++   + E++  FF  M   G+ P+  T
Sbjct: 504 MYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFT 563

Query: 344 LLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFL 400
              +L  C +   V  G    +Q  KLE    L  + Y  + +VD+ S+ G   ++    
Sbjct: 564 YATVLDTCANLATVGLGKQIHAQMIKLE----LLSDVYITSTLVDMYSKCGNMHDSLLMF 619

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
              P    +  W A++ G   H    LGE A
Sbjct: 620 RKAPKRDSVT-WNAMICGFAYHG---LGEEA 646



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 115/460 (25%), Positives = 210/460 (45%), Gaps = 67/460 (14%)

Query: 64  VFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           VF+ +P   +VVS  ++I  + +    +++I +F +M  L +     T    +   + LE
Sbjct: 112 VFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLE 171

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D  LG Q+H  A ++G   +V  GSA++D+Y K +S+E                      
Sbjct: 172 DQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLE---------------------- 209

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                    D+L +F E+P +N +SW+A I G  Q  +    + LF EM R+G+  + ST
Sbjct: 210 ---------DSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQST 260

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
                 + A ++A  +G   H  A+K     DV VG + +  YAKC +M D+  +F  L 
Sbjct: 261 YASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLP 320

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           + N+ ++NA+I GYA+N +G +A + F +++ N    + V+L G L A      V KG+S
Sbjct: 321 DHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSA----AAVIKGHS 376

Query: 363 YFSQAKLEDPGMLKPEHYA-------CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
                 L+  G+    + +        ++D+  + G   EA     ++     +  W A+
Sbjct: 377 ----EGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVS-WNAI 431

Query: 416 LGGCQIHSN--VELGEFAARRILALDPEDVSSYVML---------SNALSVAGKWDNVSN 464
           +  C+ + +    L  F A     ++P++ +   +L         SN + V G+      
Sbjct: 432 ITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRI----- 486

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDE 504
           I+  M   G+    G + +++ SK  +    ++ H+  +E
Sbjct: 487 IKSGM---GLKMFVGSALVDMYSKCGMMEEAEKIHYRLEE 523



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 35/163 (21%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+  D       +F + P  + V+   +I  FA     EEA+ LF  ML  NI+P+  T
Sbjct: 609 CGNMHDSL----LMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHAT 664

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F SV+ + +           H    K GL             + K++SI           
Sbjct: 665 FVSVLRACS-----------HVGNAKKGLF-----------YFQKMASIYAL-------- 694

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMI 212
            P +  Y+ M+  L +  + E+AL+L Q+MP   + + W  ++
Sbjct: 695 EPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLL 737


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/457 (36%), Positives = 271/457 (59%), Gaps = 4/457 (0%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIP 116
            +    +FDE+PD +VVS TT++  +A++   +EA  +F RM++   ++P+E T  +V+ 
Sbjct: 192 LAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVS 251

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   +  L  G+ ++ +    G+  +V + +A++D++ K      A  VF+     +V S
Sbjct: 252 AMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYS 311

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +TTM+    K    E A +LF +MP RN VSW+ MI  YSQ  + EEAV LF  M+ EG+
Sbjct: 312 WTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGV 371

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK--LDVFVGNSLISFYAKCGSMEDS 294
            P ++ L   + A A +  L +G+  +   V   GK  L V +GN+ I  YAKCG  + +
Sbjct: 372 EPINAGLVSVLSACAQLGCLDLGRWIYDNYV-ISGKAVLTVNLGNAFIDVYAKCGDFDAA 430

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             +F ++ ERN+V+WN++I  +A +G+ EE +  FE+++   I P+ +T LGLL AC+H+
Sbjct: 431 SKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHS 490

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           GLV +G  YF + KL      K EHYACM+DLL + G  +EA E    +P +     W A
Sbjct: 491 GLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGA 550

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LL  C+++ NVE+GEFAA +++ L+P D   YV++S   +   KWD V  +R  M+E+G+
Sbjct: 551 LLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGV 610

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
            + PGCS IE+  K H F+  D +H  +++IYA L++
Sbjct: 611 KKNPGCSSIEVDGKFHEFLVADVSHVHSEDIYAALKN 647



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 25/357 (7%)

Query: 127 GKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           G+ +H  A K G +  +V VG+A++  Y    S+  A  +F++  + +VVS+TT++ G  
Sbjct: 159 GEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYA 218

Query: 186 KRERFEDALKLFQEMP-----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           +R   ++A ++F  M        N V+  A++    Q G       +    + +G V   
Sbjct: 219 RRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFG-RMVYRYVADGGVGRS 277

Query: 241 STLPCAIIAAANIAALGMGKS----FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             L  A+I        G   S    F + AVK     DV+   ++++ YAKCG +E +  
Sbjct: 278 VNLENALIDM--FGKFGCAASAREVFDSMAVK-----DVYSWTTMVNAYAKCGDLESAAR 330

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +FD +  RN V+W+ +I  Y+Q  + EEA+  F+ M   G+ P    L+ +L AC   G 
Sbjct: 331 LFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGC 390

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           ++ G   +    +    +L        +D+ ++ G F  A +   ++  +  +  W +++
Sbjct: 391 LDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMA-ERNVVSWNSMI 449

Query: 417 GGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
               +H   E  L  F   +   + P+++ +++ L +A S +G    VS  RR  KE
Sbjct: 450 MAHAVHGQSEEVLRLFEQLKGTCIVPDEI-TFLGLLSACSHSGL---VSEGRRYFKE 502



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSS---IEEATRVFEDTHNPNVVSYTTMICGLL 185
           QLHA  T  GL ++ F  S +L  +  LS+   ++ A  +      PN     TM+   L
Sbjct: 55  QLHALLTVSGLAAHRFPASRLL-AFCALSTPPRVDHAAAILARASAPNAYMLATMMRAFL 113

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           +             +P R                    A  LF  ++RE L  +  TL  
Sbjct: 114 R-----------ARLPSR--------------------ASALFRRVIRESLPADARTLVF 142

Query: 246 AIIAAAN---IAALGMGKSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFDK 300
           AI AAA+     +   G+  H  A+K+ G +   V VGN+L+ FYA   S+  +  +FD+
Sbjct: 143 AIKAAASEHEHHSPSGGEGVHCVALKW-GHVAQSVLVGNALVHFYANHRSLAHARNLFDE 201

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEK 359
           + +R++V+W  ++ GYA+ G  +EA   F RM +  G++PN VTL+ ++ A    GL+  
Sbjct: 202 MPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAF 261

Query: 360 G---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G   Y Y +   +     L+      ++D+  + G    A+E ++D      +  W  ++
Sbjct: 262 GRMVYRYVADGGVGRSVNLEN----ALIDMFGKFGCAASARE-VFDSMAVKDVYSWTTMV 316

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
                  ++   E AAR    +   +  S+  +  A S A + +    + + M E+G+
Sbjct: 317 NAYAKCGDL---ESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGV 371



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+  ++     S  ++FD++P  N VS + +I  +++ +  EEA+ LF  M+   + 
Sbjct: 313 TTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVE 372

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQL---HAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           P      SV+ +   L  L+LG+ +   +  + K  L  N  +G+A +D+Y K    + A
Sbjct: 373 PINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVN--LGNAFIDVYAKCGDFDAA 430

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQT 218
           +++F +    NVVS+ +MI       + E+ L+LF+++    +V    ++  ++   S +
Sbjct: 431 SKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHS 490

Query: 219 GRNEEAVNLFIEM-LREGLVPNHSTLPCAI 247
           G   E    F EM L  G+ P      C I
Sbjct: 491 GLVSEGRRYFKEMKLIYGIEPKSEHYACMI 520


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/498 (34%), Positives = 285/498 (57%), Gaps = 15/498 (3%)

Query: 34  ASVQKL--ETPAIRTDS------VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           A+ +KL  E P  R D       ++    +D   +  ++ + + D   V+   +I  +  
Sbjct: 192 AAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVH 251

Query: 86  QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN--- 142
           +  YEEA  L  RM  L I+  E+T+ SVI +++     N+G+Q+HA+  +  +Q +   
Sbjct: 252 RGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHF 311

Query: 143 -VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
            + V +A++ LY +   + EA RVF+     ++VS+  ++ G +   R E+A  +F+EMP
Sbjct: 312 VLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMP 371

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            R++++W  MI G +Q G  EE + LF +M  EGL P       AI + + + +L  G+ 
Sbjct: 372 VRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQ 431

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            H+  ++      + VGN+LI+ Y++CG +E +  VF  +   + V+WNA+I   AQ+G 
Sbjct: 432 LHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGH 491

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA 381
           G +AI+ +E+M    I P+ +T L +L AC+H GLV++G  YF   ++      + +HY+
Sbjct: 492 GVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYS 551

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441
            ++DLL R+G F EAK     +PF+PG   W+ALL GC IH N+ELG  AA R+L L P+
Sbjct: 552 RLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQ 611

Query: 442 DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHM 501
              +Y+ LSN  +  G+WD V+ +R+ M+E+G+ + PGCSWIE+++ VHVF+  D  H  
Sbjct: 612 QDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVH-- 669

Query: 502 NDEIYAVLRSCTEQIREF 519
             E++AV R   + + E 
Sbjct: 670 -PEVHAVYRYLEQLVHEM 686



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 192/439 (43%), Gaps = 55/439 (12%)

Query: 38  KLETPAI--RTDSVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAI 93
           K+  P I   T  +S  S +      HQ+F+  P    + VS   +I  F+  H    A+
Sbjct: 56  KIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAAL 115

Query: 94  YLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG-KQLHAWATKVGLQSNVFVGSAILDL 152
            LF +M  L   P  FTF SV+ + + + D     +QLH    K G  S   V +A++  
Sbjct: 116 QLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSC 175

Query: 153 YIKLSS--------IEEATRVFEDTHNP---NVVSYTTMICGLLKRERFEDALKLFQEMP 201
           Y+  +S        +  A R   D   P   +  ++TT+I G ++ +    A +L + M 
Sbjct: 176 YVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMT 235

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
               V+WNAMI GY   G  EEA +L   M   G+  +  T    I AA+N     +G+ 
Sbjct: 236 DHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQ 295

Query: 262 FHACAVKFL----GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV----- 312
            HA  ++ +    G   + V N+LI+ Y +CG + ++  VFDK+  +++V+WNA+     
Sbjct: 296 VHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCV 355

Query: 313 --------------------------ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
                                     I G AQNG GEE ++ F +M++ G+ P      G
Sbjct: 356 NARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAG 415

Query: 347 LLWACNHTGLVEKGYSYFSQ-AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            + +C+  G ++ G    SQ  +L     L   +   ++ + SR G  + A      +P+
Sbjct: 416 AIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGN--ALITMYSRCGLVEAADTVFLTMPY 473

Query: 406 DPGIGFWKALLGGCQIHSN 424
              +  W A++     H +
Sbjct: 474 VDSVS-WNAMIAALAQHGH 491



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 143/347 (41%), Gaps = 49/347 (14%)

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L   +  + +HA     G +    + + ++D Y K  +I  A  +F+    P++V+ TTM
Sbjct: 9   LSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTM 68

Query: 181 ICGLLKRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           +         + A +LF   P   R+ VS+NAMI  +S +     A+ LF++M R G VP
Sbjct: 69  LSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVP 128

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV-FVGNSLISFYAKCGS------- 290
           +  T    + A + IA          C V   G L V  V N+L+S Y  C S       
Sbjct: 129 DPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSC 188

Query: 291 --MEDSLLVFDK---------------------------------LTERNIVTWNAVICG 315
             M  +  +FD+                                 +T+   V WNA+I G
Sbjct: 189 VLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISG 248

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDP 372
           Y   G  EEA +   RM   GI+ +  T   ++ A ++ GL   G   ++Y  +  ++  
Sbjct: 249 YVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPS 308

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G         ++ L +R G+  EA+     +P    +  W A+L GC
Sbjct: 309 GHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVS-WNAILSGC 354


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 269/493 (54%), Gaps = 37/493 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F    +VF  +P+ NV     +I    + +   +AIY + RM++ + RP++FT+ ++  +
Sbjct: 83  FDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKA 141

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSA----------------------------- 148
            +  + +  G+Q+H    K G+ S+V + SA                             
Sbjct: 142 CSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWN 201

Query: 149 -ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
            ++D Y+K   +E A  +F      N+ S+  MI GL K     DA KLF EM  R+ +S
Sbjct: 202 TMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEIS 261

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           W++M+ GY   GR +EA+ +F +M RE   P    L   + A +NI A+  G+  HA   
Sbjct: 262 WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLK 321

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           +   KLD  +G +L+  YAKCG ++    VF+++ ER I TWNA+I G A +GR E+A+E
Sbjct: 322 RNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALE 381

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL---EDPGMLKPEHYACMV 384
            F +++   ++PNG+TL+G+L AC H G V+KG   F   +     DP +   EHY CMV
Sbjct: 382 LFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPEL---EHYGCMV 438

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444
           DLL RSG F EA++ +  +P  P    W ALLG C+IH N +L E   + +L L+P++  
Sbjct: 439 DLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSG 498

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDE 504
            YV+LSN  +  G++D+VS IR+ MK +G+  VPG S +++   VH F  GD +H    E
Sbjct: 499 RYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKE 558

Query: 505 IYAVLRSCTEQIR 517
           IY  L+   E+++
Sbjct: 559 IYRKLKIIKERLQ 571



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 186/428 (43%), Gaps = 79/428 (18%)

Query: 105 RPSEFTFGSVIPSST-------------ALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           +P +F+    IP+S              ++  L    QLHA   + G   + +V  A+L 
Sbjct: 14  KPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLK 73

Query: 152 LYIK--LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP-------- 201
            Y     S+ + A +VF    NPNV  +  +I G L+  +   A+  +  M         
Sbjct: 74  CYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKF 133

Query: 202 ---------------------HRNVVSW---------NAMIGGYSQTGRNEEAVNLFIEM 231
                                H +VV           +A I  Y+  GR E+A  +F   
Sbjct: 134 TYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSG 193

Query: 232 LREGLVPN---HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             + +  N      L C ++ AA     G+   F    VK +G  +V     +I+  AK 
Sbjct: 194 ESDVVCWNTMIDGYLKCGVLEAAK----GL---FAQMPVKNIGSWNV-----MINGLAKG 241

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G++ D+  +FD+++ER+ ++W++++ GY   GR +EA+E F++M+    RP    L  +L
Sbjct: 242 GNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVL 301

Query: 349 WACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            AC++ G +++G   ++Y  +  ++   +L       ++D+ ++ GR     E   ++  
Sbjct: 302 AACSNIGAIDQGRWVHAYLKRNSIKLDAVLG----TALLDMYAKCGRLDMGWEVFEEMK- 356

Query: 406 DPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           +  I  W A++GG  IH   E  L  F+  +   + P  ++   +L+ A + AG  D   
Sbjct: 357 EREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLT-ACAHAGFVDKGL 415

Query: 464 NIRREMKE 471
            I + M+E
Sbjct: 416 RIFQTMRE 423


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/454 (37%), Positives = 261/454 (57%), Gaps = 37/454 (8%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  ++FDE+P  +VVS   +I  +A+  +Y++A+ LF  M+  N++P E T  +V+ +  
Sbjct: 159 SAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACA 218

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               + LG+Q+H+W    G  SN+ + +A++DLY K                        
Sbjct: 219 QSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSK------------------------ 254

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CG       E A +L + + +++V+SWN +IGGY+     +EA+ LF EMLR G  PN
Sbjct: 255 --CG-----EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 307

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF----VGNSLISFYAKCGSMEDSL 295
             T+   + A A++ A+ +G+  H    K L  + V     +  SLI  YAKCG ++ + 
Sbjct: 308 DVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAP 367

Query: 296 LVFDKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
            V D     R++ TWNA+I G+A +GR   A + F RMR NGI P+ +T +GLL AC+H+
Sbjct: 368 QVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 427

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G+++ G + F   + +     K EHY CM+DLL  SG FKEA+E +  +P +P    W +
Sbjct: 428 GMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCS 487

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LL  C+IH N+ELGE  A++++ ++PE+  SYV+LSN  + AGKW+ V  IR  + +KGM
Sbjct: 488 LLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGM 547

Query: 475 -TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
             +VPGCS IEI S VH F+ GD+ H  N EIY 
Sbjct: 548 KKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYG 581



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 221/413 (53%), Gaps = 6/413 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ +P+ N +    +    A       A+ L+  M+ L + P+ FTF  ++ S    + 
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+H    K+G   +++V ++++ +Y +   +E+A +VF+ + + +VVSYT +I G
Sbjct: 91  FKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITG 150

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R   E A K+F E+P ++VVSWNAMI GY++TG  ++A+ LF EM++  + P+ ST+
Sbjct: 151 YASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A   ++ +G+  H+         ++ + N+LI  Y+KCG +E +  + + L+ 
Sbjct: 211 ATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSN 270

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG--Y 361
           +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H G ++ G   
Sbjct: 271 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 330

Query: 362 SYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             +   KL+   +         ++D+ ++ G    A +      F+  +  W A++ G  
Sbjct: 331 HVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFA 390

Query: 421 IH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           +H  +N     F+  R   ++P+D+ ++V L +A S +G  D   NI R M++
Sbjct: 391 MHGRANAAFDIFSRMRKNGIEPDDI-TFVGLLSACSHSGMLDLGRNIFRSMRQ 442



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 39/260 (15%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+ +P  N + WN M  G++ +     A+ L++ M+  GL+PN  T P  + + A 
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------- 304
                 G+  H   +K    LD++V  SLIS YA+ G +ED+  VFD+ + R        
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 305 -----------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                  ++V+WNA+I GYA+ G  ++A+E F+ M    ++P+ 
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM---LKPEHYACMVDLLSRSGRFKEAKE 398
            T+  ++ AC  +G +E G    S   + D G    LK  +   ++DL S+ G  + A E
Sbjct: 208 STMATVVSACAQSGSIELGRQVHSW--INDHGFGSNLKIVN--ALIDLYSKCGEVETACE 263

Query: 399 FLYDLPFDPGIGFWKALLGG 418
            L  L  +  +  W  L+GG
Sbjct: 264 LLEGLS-NKDVISWNTLIGG 282


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 257/450 (57%), Gaps = 39/450 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF E+   + VS   II    +   YE+ I   + ML   + P +FT+GSV+ +   L+ 
Sbjct: 395 VFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQS 454

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G  +H  A K GL  + FV S ++D+Y K                          CG
Sbjct: 455 LEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCK--------------------------CG 488

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           ++      +A KL   +  + +VSWN++I G+S   ++EEA   F EML  G+ P+H T 
Sbjct: 489 MIT-----EAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTY 543

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A + +GK  H   +K     D ++ ++L+  YAKCG+M DSLL+F+K  +
Sbjct: 544 ATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQK 603

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            + V+WNA+ICGYA +G+G EA+E FERM+   + PN  T + +L AC+H GL++ G  Y
Sbjct: 604 LDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRY 663

Query: 364 F----SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           F    S+ KLE     + EH+ACMVD+L RS   +EA +F+  +P +     WK LL  C
Sbjct: 664 FYLMTSRYKLEP----QLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSIC 719

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +I  +VE+ E AA  +L LDP+D S Y++LSN  + +GKW +VS  RR M++  + + PG
Sbjct: 720 KIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPG 779

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           CSWIE++S++H F+ GD+ H  + E+Y +L
Sbjct: 780 CSWIEVQSEMHGFLAGDKVHPRSREVYEML 809



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 110/214 (51%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G+  HA     G     FV + +L +Y +      A  VF+   + + VS+ TM+  
Sbjct: 20  LATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTA 79

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                    A  LF  MP  +VVSWNA++ GY Q G   ++V L +EM R G+ P+ +TL
Sbjct: 80  YAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTL 139

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A   +  L +G   HA AVK   ++DV  G++L+  Y KC S+ED+L  F  + E
Sbjct: 140 AVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGE 199

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           RN V+W A I G  QN +    +E F +M+  G+
Sbjct: 200 RNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGL 233



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 169/382 (44%), Gaps = 35/382 (9%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T  V   +++D      + F  +P+  V +   ++    +     EA+ LF  M    
Sbjct: 274 VGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSG 333

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           I     +   V  +   ++    G Q+H  A K G   +V V +AILDLY K  ++ EA 
Sbjct: 334 IGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAY 393

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            VF                               QEM  R+ VSWNA+I    Q    E+
Sbjct: 394 LVF-------------------------------QEMEQRDSVSWNAIIAALEQNECYED 422

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            +    EMLR G+ P+  T    + A A + +L  G   H  A+K    LD FV ++++ 
Sbjct: 423 TIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVD 482

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG + ++  + D++  + +V+WN++I G++ N + EEA +FF  M   G++P+  T
Sbjct: 483 MYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFT 542

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYD 402
              +L  C +   +E G     Q   ++  ML  E+  + +VD+ ++ G   ++   +++
Sbjct: 543 YATVLDTCANLATIELGKQIHGQIIKQE--MLGDEYISSTLVDMYAKCGNMPDSL-LMFE 599

Query: 403 LPFDPGIGFWKALLGGCQIHSN 424
                    W A++ G  +H  
Sbjct: 600 KAQKLDFVSWNAMICGYALHGQ 621



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 181/412 (43%), Gaps = 41/412 (9%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  + + N VS    I    +   Y   + LF +M  L +  S+  + SV  S  A+  L
Sbjct: 194 FHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCL 253

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           +  +QLHA A K    ++  VG+AI+D+Y K  S+ +A R F                  
Sbjct: 254 STARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFF----------------- 296

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                          +P+  V + NAM+ G  +TG   EA+ LF  M R G+  +  +L 
Sbjct: 297 --------------SLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLS 342

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
               A A +     G   H  A+K    +DV V N+++  Y KC ++ ++ LVF ++ +R
Sbjct: 343 GVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQR 402

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           + V+WNA+I    QN   E+ I +   M   G+ P+  T   +L AC   GL    Y   
Sbjct: 403 DSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKAC--AGLQSLEYGSV 460

Query: 365 SQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              K    G+ L     + +VD+  + G   EA++ L+D      +  W +++ G  ++ 
Sbjct: 461 VHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQK-LHDRIGGQELVSWNSIISGFSLNK 519

Query: 424 NVELGE--FAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREM 469
             E  +  F+    + + P+  +   +L    ++A    GK  +   I++EM
Sbjct: 520 QSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEM 571



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 35/298 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +PD +VVS   ++  + ++  + +++ L   M    + P   T   ++ +   LED
Sbjct: 92  LFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLED 151

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LG Q+HA A K GL+ +V  GSA++D+Y K  S+E+A R F      N VS+   I G
Sbjct: 152 LALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAG 211

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            ++ E++   L+                               LF++M R GL  +    
Sbjct: 212 CVQNEQYTRGLE-------------------------------LFVQMQRLGLGVSQPAY 240

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                + A I  L   +  HA A+K     D  VG +++  YAK  S+ D+   F  L  
Sbjct: 241 ASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPN 300

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             +   NA++ G  + G G EA++ F+ M  +GI  + V+L G+  AC       KGY
Sbjct: 301 HTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEV----KGY 354



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 5/195 (2%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +   ++ D +    +VS  +II  F+     EEA   FS ML + ++P  FT+ +V+ +
Sbjct: 490 ITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDT 549

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L  + LGKQ+H    K  +  + ++ S ++D+Y K  ++ ++  +FE     + VS+
Sbjct: 550 CANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSW 609

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEAVNLFIEML- 232
             MICG     +  +AL++F+ M   NVV    ++ A++   S  G  ++    F  M  
Sbjct: 610 NAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTS 669

Query: 233 REGLVPNHSTLPCAI 247
           R  L P      C +
Sbjct: 670 RYKLEPQLEHFACMV 684



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 35/205 (17%)

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN- 305
           + A A  +AL  G++ HA  +        FV N L+  YA+CG    +  VFD +  R+ 
Sbjct: 11  LCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDT 70

Query: 306 ------------------------------IVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
                                         +V+WNA++ GY Q G   +++     M   
Sbjct: 71  VSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARR 130

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFK 394
           G+ P+  TL  LL AC   GL +        A     G+ +     + +VD+  +    +
Sbjct: 131 GVAPDRTTLAVLLKACG--GLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLE 188

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGC 419
           +A  F + +     +  W A + GC
Sbjct: 189 DALRFFHGMGERNSVS-WGAAIAGC 212


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 264/460 (57%), Gaps = 8/460 (1%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           HQVF+++P  ++VS   +I  +AK+    EA+ LF  M+ L + P EFT   ++ S   L
Sbjct: 118 HQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQL 177

Query: 122 EDLNLGKQLHAWAT--KVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            ++  GK +H W    K  + SN+ +G+A+LD+Y+K   +E A R F      ++VS+  
Sbjct: 178 GNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNM 237

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           ++ G  K    E A   F +MP R++VSWN+++ GY+  G       L ++M+ E ++P+
Sbjct: 238 IVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPD 297

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T+   + AA    AL  G+  H   ++   KLD F+G++LI  Y KCGS+E +  VF 
Sbjct: 298 TVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFK 357

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ ++++  W  +I G A +G G +A+E F  M+   + P+ VT + +L AC+H+GLV++
Sbjct: 358 EINKKDVTVWTTMITGLAFHGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQ 416

Query: 360 GYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           G   FS   + D G ++P  EHY C+VDLL+RSGR  EAK+ +  +P  P    W A+L 
Sbjct: 417 GIKVFSS--MTDYG-IEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLN 473

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            CQ   +VEL E A+R +L LDPE+   Y +LSN  + +G+W     IR  M+ +G+ + 
Sbjct: 474 ACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKT 533

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            GCS + +   VH F++ D+ H    +I ++L     +++
Sbjct: 534 AGCSSVVVDGVVHNFISADKCHPGWVDISSILNCLKNEMK 573



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 192/448 (42%), Gaps = 80/448 (17%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           P+ N+    T+I  F+     E + YL++ +L     P + T   ++ +   +  +   K
Sbjct: 28  PNPNLFIYNTLISAFSSLKKIE-SFYLYNVLLSSGECPDKQTLLYLLQAVNFISQV---K 83

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           Q+H  A   GL S  ++ + ++ +Y++   +  A +VFE                     
Sbjct: 84  QIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFE--------------------- 122

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     +MP  ++VS+N MI GY++ G   EA+ LF EM+  GL P+  T+   ++
Sbjct: 123 ----------KMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLV 172

Query: 249 AAANIAALGMGKSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           +   +  +  GK+ H    +    +  ++ +GN+L+  Y KC  +E +L  F  L E++I
Sbjct: 173 SCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDI 232

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIR---------------------------- 338
           V+WN ++ G A+ G  E+A  FF +M    I                             
Sbjct: 233 VSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVME 292

Query: 339 ---PNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
              P+ VT++ L+ A   +G +++G   + +  + +++    L     + ++D+  + G 
Sbjct: 293 KVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLG----SALIDMYCKCGS 348

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHS-NVELGEFAARRILALDPEDVSSYVMLSN 451
            + A     ++     +  W  ++ G   H    +  E  +     + P+DV ++V + +
Sbjct: 349 IERASRVFKEIN-KKDVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPDDV-TFVSVLS 406

Query: 452 ALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           A S +G  D    +   M + G+   PG
Sbjct: 407 ACSHSGLVDQGIKVFSSMTDYGIE--PG 432



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 56/328 (17%)

Query: 188 ERFEDALKLFQEM-PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
           +  + A+ LF    P+ N+  +N +I  +S   +  E+  L+  +L  G  P+  TL   
Sbjct: 14  DNLDLAITLFNHFTPNPNLFIYNTLISAFSSL-KKIESFYLYNVLLSSGECPDKQTLLYL 72

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDV-FVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
           + A   I+ +   K  H C     G     ++ N+LI  Y + G +  +  VF+K+   +
Sbjct: 73  LQAVNFISQV---KQIH-CQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPD 128

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           IV++N +I GYA+ G G EA+  F  M   G+ P+  T+LGLL +C   G V+ G +   
Sbjct: 129 IVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHG 188

Query: 366 QAKLEDP-----------------------------GMLKPEH---YACMVDLLSRSGRF 393
             +   P                             G LK +    +  +V   ++ G  
Sbjct: 189 WMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGEL 248

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD-------PEDVSSY 446
           ++A+ F Y +P    I  W +L+ G         G+FA+ + L +D       P+ V+  
Sbjct: 249 EQARLFFYQMPCRD-IVSWNSLVTGYACR-----GDFASVKELIVDMVMEKVIPDTVTMI 302

Query: 447 VMLSNALSVA----GKWDNVSNIRREMK 470
            ++S A        G+W +   IR ++K
Sbjct: 303 SLVSAATESGALDQGRWAHGWVIRMQIK 330


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/473 (34%), Positives = 269/473 (56%), Gaps = 12/473 (2%)

Query: 54  ESDKFSSVHQVFD--EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFT 110
           E+       ++FD  E+   + +S  ++I  +A    ++EA+ +F  +L+   I    FT
Sbjct: 220 ENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFT 279

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
            GSV+ +   +  L  GK++HA A   GL  N FVG A++++Y K   ++ A   F+   
Sbjct: 280 LGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVT 339

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVN 226
             +  ++  +I G     + E+   L Q+M       NV +WN +I G+ + G NE A+ 
Sbjct: 340 ERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALR 399

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF EM    L P+  T+   + A A +A +  GK  HA +++   +LDV +G +L+  YA
Sbjct: 400 LFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYA 459

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCGS++ ++ V+++++  N+V+ NA++  YA +G G+E I  F  M  NG RP+ VT L 
Sbjct: 460 KCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLS 519

Query: 347 LLWACNHTGLVEKGYSYFSQAKLED--PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +L +C H G VE G+ +F      +  P +   +HY C+VDLLSR+GR  EA E +  +P
Sbjct: 520 VLSSCVHAGAVETGHEFFDLMTYYNVTPSL---KHYTCIVDLLSRAGRLDEAYELVKKIP 576

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
             P    W ALLGGC I  NVELGE AA  ++ L+P +  +YV+L+N  + AG+W ++  
Sbjct: 577 RKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDR 636

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            R+ +K++GM + PGCSWIE +  +HVF++ D++H   ++IY  L +    +R
Sbjct: 637 TRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 689



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 197/430 (45%), Gaps = 60/430 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF ++P  N+ S T I+       ++EEA+ LF ++ L +I    F F  V+     L  
Sbjct: 116 VFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRV 175

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LG+QLH    K                  + + +  A ++F      NVVSY TMI G
Sbjct: 176 LELGRQLHGVVIK------------------RCADMGSALKIFSGFSVKNVVSYNTMIVG 217

Query: 184 LLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNH 240
             +    E A +LF +M    ++ +SWN+MI GY+     +EA+++F ++L  EG+  + 
Sbjct: 218 YCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADS 277

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL   + A A++A+L  GK  HA AV      + FVG +L+  Y+KC  ++ + L FD 
Sbjct: 278 FTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDG 337

Query: 301 LTERNIVTWNAVICGYA-----------------------------------QNGRGEEA 325
           +TER+  TWN +I GYA                                   +NG  E A
Sbjct: 338 VTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELA 397

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385
           +  F  M+ + +RP+  T+  +L AC     + +G    + + +     L     A +VD
Sbjct: 398 LRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHS-IRQGYELDVHIGAALVD 456

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDV 443
           + ++ G  K A + +Y+   +P +    A+L    +H + + G    R +L     P+ V
Sbjct: 457 MYAKCGSIKHAMQ-VYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHV 515

Query: 444 SSYVMLSNAL 453
           +   +LS+ +
Sbjct: 516 TFLSVLSSCV 525



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 161/385 (41%), Gaps = 70/385 (18%)

Query: 97  SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL 156
           + + LL+ +    T+ S++ S   L   NLGKQ+HA   K G   + FV + +L +Y + 
Sbjct: 51  THLSLLDKQIDSSTYASLLESCRTL---NLGKQVHAHTLKTGFHGHEFVETKLLQMYGRF 107

Query: 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216
             +++A  VF                                +MP RN+ SW A++  + 
Sbjct: 108 GCLDDANLVF-------------------------------VKMPQRNLYSWTAILSVHV 136

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
             G  EEA++LF ++  + +       P  +     +  L +G+  H   +K        
Sbjct: 137 DHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIK-------- 188

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
                     +C  M  +L +F   + +N+V++N +I GY +NG  E+A E F++M + G
Sbjct: 189 ----------RCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVG 238

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE-----DPGMLKPEHYACMVDLLS-RS 390
              + ++   ++       L ++  S F    +E     D   L     AC  D+ S R 
Sbjct: 239 --KDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAAC-ADMASLRR 295

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGC--QIHSNVELGEFAARRILALDPEDVSSYVM 448
           G+   A+  +  L        W   +GG   +++S  E  + A      +   D +++ +
Sbjct: 296 GKEVHAQAVVRGL-------HWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNV 348

Query: 449 LSNALSVAGKWDNVSNIRREMKEKG 473
           L +  +   + +N+ N+ ++MK  G
Sbjct: 349 LISGYACCNQLENIQNLIQKMKGDG 373


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 160/461 (34%), Positives = 268/461 (58%), Gaps = 32/461 (6%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHY-EEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +  ++FD++ D NV S T +I  + ++  Y EEA+ LF  M+L ++ P+ FTF S + + 
Sbjct: 327 AARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC 386

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L  L +G+Q+   A K+G  S   V ++++ +Y +                       
Sbjct: 387 ANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYAR----------------------- 423

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                     R +DA K F  +  +N++S+N +I  Y++   +EEA+ LF E+  +G+  
Sbjct: 424 --------SGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  T    +  AA+I  +G G+  HA  +K   KL+  V N+LIS Y++CG++E +  VF
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           + + +RN+++W ++I G+A++G   +A+E F +M   G+RPN VT + +L AC+H GLV 
Sbjct: 536 EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVN 595

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +G+ +F     E   + + EHYACMVD+L RSG   EA +F+  +P+      W+  LG 
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C++H N+ELG+ AA+ I+  +P D ++Y++LSN  +   KWD VSNIR+ MKEK + +  
Sbjct: 656 CRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEA 715

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           GCSW+E+++KVH F  GD +H    EIY  L++ + +I++ 
Sbjct: 716 GCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKL 756



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 187/390 (47%), Gaps = 54/390 (13%)

Query: 37  QKLETPAIRTDSVS----------CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQ 86
           +KL    ++ DSV+          CG + +K +S+ Q+     DL  +S + ++  FA  
Sbjct: 90  EKLTQSDLQLDSVTLNSLISLYSKCG-QWEKATSIFQLMGSSRDL--ISWSAMVSCFANN 146

Query: 87  HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFV 145
           +    A+  F  M+     P+E+ F +   + +  E +++G  +  +  K G LQS+V V
Sbjct: 147 NMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCV 206

Query: 146 GSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
           G  ++D+++K                               R     A K+F++MP RN 
Sbjct: 207 GCGLIDMFVK------------------------------GRGDLVSAFKVFEKMPERNA 236

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
           V+W  MI    Q G   EA++LF+EM+  G  P+  TL   I A AN+  L +G+  H+ 
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 266 AVKFLGKLDVFVGNSLISFYAKC---GSMEDSLLVFDKLTERNIVTWNAVICGYAQN-GR 321
           A++    LD  VG  LI+ YAKC   GSM  +  +FD++ + N+ +W A+I GY Q  G 
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHY 380
            EEA++ F  M +  + PN  T    L AC +   +  G   F+ A KL   G       
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL---GFSSVNCV 413

Query: 381 A-CMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           A  ++ + +RSGR  +A++  +D+ F+  +
Sbjct: 414 ANSLISMYARSGRIDDARK-AFDILFEKNL 442



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 108/204 (52%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  + S +     + FD + + N++S  T+I  +AK  + EEA+ LF+ +    +  S 
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF S++  + ++  +  G+Q+HA   K GL+ N  V +A++ +Y +  +IE A +VFED
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEA 224
             + NV+S+T++I G  K      AL+LF +M       N+V++ A++   S  G   E 
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEG 597

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
              F  M  E G++P      C +
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACMV 621



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 1/147 (0%)

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           GR  +A++    M+ +G  P+  T    +       +  +G   H    +   +LD    
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 279 NSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           NSLIS Y+KCG  E +  +F  + + R++++W+A++  +A N  G  A+  F  M  NG 
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYF 364
            PN         AC+    V  G S F
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIF 191


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 167/463 (36%), Positives = 277/463 (59%), Gaps = 12/463 (2%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYE-EAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALE 122
           F+ + + ++VS  ++I     QH ++ EA+  FS +L   +++P  F+  S + +   LE
Sbjct: 196 FELLSERDIVSWNSMIAG-CNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLE 254

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT--HNPNVVSYTTM 180
            L+ GKQ+H +  +    ++  VG+A++ +Y K   +E A R+ E +   + +V+++T +
Sbjct: 255 KLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTAL 314

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           + G +K      A ++F  +   +VV+W AMI GY Q G N +A+ +F  M+ EG  PN 
Sbjct: 315 LNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNS 374

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL   + A++++ +L  GK  HA A++    L   VGN+L + YAK GS+  +  VF+ 
Sbjct: 375 FTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNL 434

Query: 301 LTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           L + R+ V+W ++I   AQ+G GEEAIE FE+M   GI+P+ +T +G+L AC H GLVE+
Sbjct: 435 LRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQ 494

Query: 360 GYSYFSQAK---LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G SYF   K     DP +    HYACMVDL  R+G  +EA +F+ ++P +P +  W +LL
Sbjct: 495 GRSYFDLMKNVHKIDPTL---SHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLL 551

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C+++ NV+L + AA R+L ++P +  +Y  L+N  S  GKWD+ + IR+ MK +G+ +
Sbjct: 552 SSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKK 611

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
             G SW++I++K HVF   D  H   DEIY ++    ++I++ 
Sbjct: 612 EQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKM 654



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 208/437 (47%), Gaps = 43/437 (9%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++  K    HQVFD +P  + VS TTII  + +   +E+AI +F  M+   + P++FT  
Sbjct: 52  AKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLT 111

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ S  A     +GK++H++  K+GL + V V +++L++Y K   ++ A  VF+     
Sbjct: 112 NVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR 171

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N  S+  MI   +   R + AL  F+ +  R++VSWN+MI G +Q G + EA+  F  +L
Sbjct: 172 NTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSIL 231

Query: 233 RE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           ++  L P+  +L  A+ A AN+  L  GK  H   V+ +      VGN+LIS YAK G +
Sbjct: 232 KDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGV 291

Query: 292 E-------------------DSLL--------------VFDKLTERNIVTWNAVICGYAQ 318
           E                    +LL              +F+ L + ++V W A+I GY Q
Sbjct: 292 EIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQ 351

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           NG   +AIE F+ M   G RPN  TL  +L A +    +  G    + A +     L P 
Sbjct: 352 NGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASA-IRSGEALSPS 410

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE-----FAAR 433
               +  + +++G    A++    L  +     W +++     H    LGE     F   
Sbjct: 411 VGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHG---LGEEAIELFEQM 467

Query: 434 RILALDPEDVSSYVMLS 450
             L + P+ ++   +LS
Sbjct: 468 LTLGIKPDHITYVGVLS 484



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 168/344 (48%), Gaps = 18/344 (5%)

Query: 136 KVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALK 195
           K+GL  +V++ + +++LY K     +A  +F +       S+ T++ G  K+ + E A +
Sbjct: 3   KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ 62

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
           +F  +P R+ VSW  +I GY+Q GR E+A+ +F++M+++ ++P   TL   + + A   +
Sbjct: 63  VFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGS 122

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
            G+GK  H+  VK      V V NSL++ YAK G ++ + +VFD++  RN  +WNA+I  
Sbjct: 123 RGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISL 182

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           +   GR + A+  FE +    I    V+   ++  CN  G   +   +FS   L+D   L
Sbjct: 183 HMNCGRVDLALAQFELLSERDI----VSWNSMIAGCNQHGFDNEALQFFSSI-LKDTS-L 236

Query: 376 KPEHYACMVDL-----LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
           KP+ ++    L     L +    K+   ++    FD       AL+        VE+   
Sbjct: 237 KPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEI--- 293

Query: 431 AARRIL---ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
            ARRI+    +   DV ++  L N     G       I   +K+
Sbjct: 294 -ARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKD 336


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/453 (36%), Positives = 268/453 (59%), Gaps = 5/453 (1%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSST 119
           +  +FDE+PD +V+S   +I  + K   +E+AI +F RM   + + P E T  S + + T
Sbjct: 191 MKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACT 250

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           AL+ L LGK++H +  +  ++    +G+A+LD+Y K   +  A  VFE+  + NV+ +TT
Sbjct: 251 ALKRLELGKKIHHYV-RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTT 309

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           M+ G       E+A +LF+  P R+VV W AMI GY Q  R +EAV LF EM    + P+
Sbjct: 310 MVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPD 369

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
              +   +   A   A+  GK  H    +    +D  VG +LI  YAKCG +E +L +F 
Sbjct: 370 KFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFY 429

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            L  ++  +W ++ICG A NG+  +A+E F +M+  G+RP+ +T +G+L AC+H GLVE+
Sbjct: 430 GLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEE 489

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG---IGFWKALL 416
           G  +F+  ++E     K EHY C+VDLL R+G   EA+E +  +P +     +  + +LL
Sbjct: 490 GRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLL 549

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C+I+ NVE+GE  A++++  +  D S + +L+N  + A +W++V+ +RR+MK+ G+ +
Sbjct: 550 SACRIYGNVEMGERVAKQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKK 609

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            PGCS IE+ S +H F +G  +H    EIY +L
Sbjct: 610 TPGCSSIEVDSIIHEFFSGHPSHPEMREIYYML 642



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 186/408 (45%), Gaps = 72/408 (17%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           II  FAK+ +Y+  + LFS++    + P  FT+  V  +   L +++  ++L    TK G
Sbjct: 108 IIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTG 167

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+ + +V ++++D+Y +L+  +    +F++  + +V+S+  MI G +K  RFEDA+ +F 
Sbjct: 168 LEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFC 227

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            M                     EE+          GL+P+ +T+   + A   +  L +
Sbjct: 228 RM--------------------QEES----------GLMPDEATVVSTLSACTALKRLEL 257

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GK  H   V+   K    +GN+L+  Y KCG +  +  VF+++  +N++ W  ++ GYA 
Sbjct: 258 GKKIHH-YVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYAN 316

Query: 319 NGRGEEAIEFFE-------------------------------RMRINGIRPNGVTLLGL 347
            G  EEA E FE                                M+I  ++P+   ++ L
Sbjct: 317 CGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSL 376

Query: 348 LWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           L  C  TG +E+G   + +  + ++    ++       ++++ ++ G  ++A E  Y L 
Sbjct: 377 LTGCAQTGAIEQGKWIHEFIDENRIPIDAVVG----TALIEMYAKCGFIEKALEIFYGLR 432

Query: 405 FDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
                  W +++ G  ++      L  F+  +   + P+D++   +LS
Sbjct: 433 VK-DTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLS 479



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 147/319 (46%), Gaps = 22/319 (6%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A K+F+ + +  ++ +N +I  +++ G  +  + LF ++  +GL P++ T P    A   
Sbjct: 90  AEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGY 149

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           +  +   +       K   + D +V NSLI  YA+    +   ++FD++ +R++++WN +
Sbjct: 150 LGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVM 209

Query: 313 ICGYAQNGRGEEAIEFFERMR-INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           I GY +  R E+AI  F RM+  +G+ P+  T++  L AC     +E G       +  D
Sbjct: 210 ISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVR--D 267

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV-ELGEF 430
                P     ++D+  + G    A+    ++P    +  W  ++ G   ++N  EL E 
Sbjct: 268 NVKFTPIIGNALLDMYCKCGCLSIARAVFEEMP-SKNVICWTTMVSG---YANCGELEE- 322

Query: 431 AARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG--------MTRVPGCS 481
            AR +    P  DV  +  + N      ++D    + REM+ +         ++ + GC+
Sbjct: 323 -ARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCA 381

Query: 482 W---IEIKSKVHVFVTGDR 497
               IE    +H F+  +R
Sbjct: 382 QTGAIEQGKWIHEFIDENR 400



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 4/193 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  +   +     ++F+  P  +VV  T +I  + + + ++EA+ LF  M +  ++
Sbjct: 308 TTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVK 367

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P +F   S++        +  GK +H +  +  +  +  VG+A++++Y K   IE+A  +
Sbjct: 368 PDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEI 427

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRN 221
           F      +  S+T++ICGL    +   AL+LF +M    V    +++  ++   S  G  
Sbjct: 428 FYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLV 487

Query: 222 EEAVNLFIEMLRE 234
           EE    F  M  E
Sbjct: 488 EEGRKFFNSMRME 500


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 172/450 (38%), Positives = 254/450 (56%), Gaps = 33/450 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  ++FDE+P  +VVS   II  +A   + +EA+ LF  M+  N++P E T  +V+ +  
Sbjct: 187 SAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACA 246

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               + LG+Q+H+W    GL SN+ + +A++DLY K   +E A                 
Sbjct: 247 QSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETA----------------- 289

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CGL            FQ + +++V+SWN MIGGY+     +EA+ LF EMLR G  PN
Sbjct: 290 --CGL------------FQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPN 335

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLV 297
             T+   + A A + A+  G+  H    K +  +     +  SLI  YAKCG +E +  V
Sbjct: 336 DVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQV 395

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +  R +   NA+I G+A +GR   A + F RMR NGI P+ +T +GLL AC+H+G++
Sbjct: 396 FNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGML 455

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + G   F           K EHY CM+DLL   G FKEA+E +  +  +P    W +LL 
Sbjct: 456 DLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLK 515

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H NVELGE  A++++ ++PE+  SYV+LSN  + AG+W+ V+NIR  + +KGM +V
Sbjct: 516 ACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKV 575

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           PGCS IEI S VH F+ GD+ H  N EIY 
Sbjct: 576 PGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605



 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 219/411 (53%), Gaps = 5/411 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ + + N++   T+    A       AI L+  M+ L + P+ +TF  ++ S   L+ 
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKV 118

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+H    K+G + +++V ++++ +Y+K    ++A +VF+ + + +VVSYT +I G
Sbjct: 119 SKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITG 178

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R   E A K+F E+P ++VVSWNA+I GY+ TG N+EA++LF EM++  + P+ ST+
Sbjct: 179 YASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTM 238

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A   ++ +G+  H+         ++ + N+LI  Y+KCG +E +  +F  L+ 
Sbjct: 239 VTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSN 298

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC   G ++ G   
Sbjct: 299 KDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWI 358

Query: 364 FSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                    G+         ++D+ ++ G   EA   +++      +    A++ G  +H
Sbjct: 359 HVYIDKRIKGVTNASSLRTSLIDMYAKCGDI-EAAHQVFNSMHHRTLSACNAMIFGFAMH 417

Query: 423 --SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
             +N     F+  R   ++P+D+ ++V L +A S +G  D    I R M +
Sbjct: 418 GRANAAFDIFSRMRKNGIEPDDI-TFVGLLSACSHSGMLDLGRRIFRSMTQ 467



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 39/260 (15%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+ +   N++ WN M  G++ +     A+ L++ M+  GL+PN  T P  + + A 
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAK 115

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------- 304
           +     G+  H   +K   +LD++V  SLIS Y K G  +D+  VFD  + R        
Sbjct: 116 LKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTAL 175

Query: 305 -----------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                  ++V+WNA+I GYA  G  +EA++ F+ M    ++P+ 
Sbjct: 176 ITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDE 235

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM---LKPEHYACMVDLLSRSGRFKEAKE 398
            T++ ++ AC  +G ++ G    S   ++D G+   LK  +   ++DL S+ G  + A  
Sbjct: 236 STMVTVVSACAQSGSIQLGRQVHSW--IDDHGLGSNLKIVN--ALIDLYSKCGEVETACG 291

Query: 399 FLYDLPFDPGIGFWKALLGG 418
               L  +  +  W  ++GG
Sbjct: 292 LFQGLS-NKDVISWNTMIGG 310



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 15/212 (7%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           ++RT  +   ++     + HQVF+ +    + +   +I  FA       A  +FSRM   
Sbjct: 374 SLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKN 433

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEE 161
            I P + TF  ++ + +    L+LG+++    T+   +   +     ++DL   L   +E
Sbjct: 434 GIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKE 493

Query: 162 ATRVFED-THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-------NVVSWNAMIG 213
           A  +    T  P+ V +    C LLK  +    ++L +    +       N  S+  +  
Sbjct: 494 AEEMINTMTMEPDGVIW----CSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSN 549

Query: 214 GYSQTGRNEEAVNLFIEMLREGL--VPNHSTL 243
            Y+  GR  E  N+   +  +G+  VP  S++
Sbjct: 550 IYATAGRWNEVANIRALLNDKGMKKVPGCSSI 581


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 276/451 (61%), Gaps = 6/451 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FDE    +VV+ TT+I  +A+ +  +EAI LF+ ML  +++P+E T  +++ + +   
Sbjct: 208 QMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKG 267

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D  +GK LH    +  +  ++ + +A+LD+Y+K   +  A  +F +    +V S+T+++ 
Sbjct: 268 DSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLN 327

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHS 241
           G  K      A KLF EMP RN+VSWNAMI GYSQ  +  EA+ LF  M+   GLVP   
Sbjct: 328 GYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTED 387

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           TL C + A+  +  L MG+  H   V  +G ++ + + N+++  YAKCGS++ +  +F  
Sbjct: 388 TLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHS 447

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + E+N+V+WN++I  YA  G  ++A+  F++M  +G++P+ +T +G+L AC++ G V +G
Sbjct: 448 MPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEG 507

Query: 361 YSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            ++F    +E+   ++P  EHYACMVDLLSR G  KEA E +  +P +   G W ALL  
Sbjct: 508 QAHFES--MENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDA 565

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+ H NVE+ + A  ++L LDPED   Y +L+N  +   KW +V  +RR M+E+G+ +VP
Sbjct: 566 CRKHGNVEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVP 625

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           G S IEI+ K H F+  D +H  + EIY V+
Sbjct: 626 GHSLIEIEGKFHEFLVADTSHTRSSEIYRVV 656



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 19/346 (5%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWAT----KVGLQSNVFVGSAILDLYIKLSSIEE 161
           PS F+F    P + AL  L+  + L   ++    K    SNVF+ +  L +    SS+ +
Sbjct: 11  PSHFSF---FPLNLALNILHSFRPLSTSSSPGKPKWNSLSNVFISNPTLLILQSCSSMFQ 67

Query: 162 ATRVFEDTHNPNVV------SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
             ++        ++      S     C L        A  +F +    N   WN MI GY
Sbjct: 68  LKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGY 127

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
            +        + F +M+R     +  +   A+ A    A   +G + H+   K     D+
Sbjct: 128 CKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWKRGFDSDL 187

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           FV N LI  Y + G +  +  +FD+ + +++VTW  +I GYA+N   +EAI  F  M  +
Sbjct: 188 FVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSS 247

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
            ++PN VT++ LL AC+  G  E G +     + +D           M+D+  + G    
Sbjct: 248 DVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDI-TCSLNLLNAMLDMYVKCGCLTT 306

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441
           A+E   ++     +  W +LL G     N +LG  +AR++    PE
Sbjct: 307 AREIFNNME-RRDVFSWTSLLNG--YAKNGDLG--SARKLFDEMPE 347



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 33/193 (17%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEFTF 111
           +++    S  ++FDE+P+ N+VS   +I  +++     EA+ LF  M+ ++ + P+E T 
Sbjct: 330 AKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTL 389

Query: 112 GSVIPSSTALEDLNLGKQLHA-WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             V+ +S  L  L +G+++H     K+G+Q ++ + +A++D+Y K  SI+ A ++F    
Sbjct: 390 VCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMP 449

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             N+VS+ +M                               I  Y+  G  ++A+ LF +
Sbjct: 450 EKNLVSWNSM-------------------------------ISAYASYGHAKKALTLFDQ 478

Query: 231 MLREGLVPNHSTL 243
           M+  GL P+H T 
Sbjct: 479 MIGSGLKPDHITF 491


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 161/466 (34%), Positives = 268/466 (57%), Gaps = 34/466 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D+      +F+E+P+L+ VS   +I  +++   YEE++ LF  M  +      F F 
Sbjct: 290 SKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFA 349

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  +  L  L +G+Q+H  A      S + VG++++D+Y K                 
Sbjct: 350 TMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKC---------------- 393

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                          E F++A  +F+ +  R+ VSW A+I GY Q G +   + LF +M 
Sbjct: 394 ---------------EMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMR 438

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              L  + ST    + A+A  A+L +GK  HA  ++     +VF G+ L+  YAKCGS++
Sbjct: 439 GANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIK 498

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D++ VF+++ +RN V+WNA+I  YA NG GE AI  F +M  +G++P+ V++LG+L AC+
Sbjct: 499 DAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACS 558

Query: 353 HTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           H G VE+G  +F QA     G+  K +HYACM+DLL R+GRF EA++ + ++PF+P    
Sbjct: 559 HCGFVEQGTEFF-QAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIM 617

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
           W ++L  C+I+ N  L E AA ++ +++   D ++YV +SN  + AGKW+NV ++++ M+
Sbjct: 618 WSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMR 677

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           E+G+ +VP  SW+E+  K+HVF + D+ H   DEI   +   T +I
Sbjct: 678 ERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEI 723



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 184/412 (44%), Gaps = 37/412 (8%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           CRS+ ++  L +   ++    +  +      + T  + +  V  G      SS   +FD 
Sbjct: 45  CRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGD----LSSARHLFDA 100

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +PD  VV+ T ++G +A  +H++EA  LF +M      P   TF +++P        N  
Sbjct: 101 MPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAV 160

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            Q+HA+A K+G  +N+F+   + ++ +K                    SY  +       
Sbjct: 161 GQVHAFAVKLGFDTNLFL--TVCNVLLK--------------------SYCEV------- 191

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
            R + A  LF+E+  ++ V++N +I GY + G   EA++LF++M + G  P+  T    +
Sbjct: 192 RRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVL 251

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A   +    +G+  H  +V      D  VGN ++ FY+K   + ++  +F+++ E + V
Sbjct: 252 KAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFV 311

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           ++N VI  Y+Q  + EE++  F  M+  G          +L    +   ++ G     QA
Sbjct: 312 SYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQA 371

Query: 368 KLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            +     +   H    +VD+ ++   F EA+     L     +  W AL+ G
Sbjct: 372 IVATADSIL--HVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVS-WTALISG 420



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 2/225 (0%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +++ A   K G  ++    +  ++  ++   +  A +V+++  + N VS  TMI G +K 
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                A  LF  MP R VV+W  ++G Y+     +EA  LF +M R   +P++ T    +
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLL 148

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVF--VGNSLISFYAKCGSMEDSLLVFDKLTERN 305
               +          HA AVK     ++F  V N L+  Y +   ++ + ++F+++ +++
Sbjct: 149 PGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKD 208

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            VT+N +I GY ++G   EAI  F +MR +G +P+  T  G+L A
Sbjct: 209 SVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKA 253



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 12/199 (6%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D      QVF+E+PD N VS   +I  +A     E AI  F++M+   ++P   +
Sbjct: 494 CGSIKDAV----QVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVS 549

Query: 111 FGSVIPSSTALEDLNLGKQ-LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
              V+ + +    +  G +   A +   G+       + +LDL  +     EA ++ ++ 
Sbjct: 550 ILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEM 609

Query: 170 -HNPNVVSYTTMI--CGLLKRERFED--ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
              P+ + +++++  C + K +   +  A +LF     R+  ++ +M   Y+  G+ E  
Sbjct: 610 PFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENV 669

Query: 225 VNLFIEMLREGL--VPNHS 241
            ++   M   G+  VP +S
Sbjct: 670 RHVKKAMRERGIKKVPAYS 688


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 160/420 (38%), Positives = 247/420 (58%), Gaps = 4/420 (0%)

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +RP        + +   +  +++G+QLH +A K G +++  V +A++D+Y K     E  
Sbjct: 153 LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVV 212

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTG 219
           RVF+++ + +V S   +I GL +  +  +AL+LF+E   R    NVVSW +++    Q G
Sbjct: 213 RVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNG 272

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
           ++ EAV  F EM  +G  PN  T+PC + A AN+AAL  G+S H  A++     DV+V +
Sbjct: 273 KDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSS 332

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           +L+  YAKCG ++D+ ++FD +  RN+V+WNA+I GYA  G    A+  F  M     +P
Sbjct: 333 ALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKP 392

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           + VT   LL AC   GL E+G  YF +   E     + EHYACMV LL R+G+  EA + 
Sbjct: 393 DMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDL 452

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + D+PF+P    W +LLG C++H NV+L E AA ++  L+PE+  +YV+LSN  +    W
Sbjct: 453 ISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMW 512

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           D V+ +R  MK+ G+ +  GCSWIEIK+KVH+ + GD +H M   I   +     Q+R+ 
Sbjct: 513 DRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKL 572



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 159/339 (46%), Gaps = 47/339 (13%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN--VVSYTTMI 181
           L L + LHA A   GL  + FV S++L  Y++L +   A  +F+    P   VV ++ ++
Sbjct: 33  LPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALV 92

Query: 182 CGLLKRERFEDALKLFQEMPHR-----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                R   E A +L +EM        NV++WN ++ G +++GR  +AV     M  EGL
Sbjct: 93  AAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGL 152

Query: 237 V-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+ + + CA+ A  ++  + +G+  H  AVK   + D  V  +LI  Y KCG   + +
Sbjct: 153 LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVV 212

Query: 296 LVFDKLT-----------------------------------ERNIVTWNAVICGYAQNG 320
            VFD+ +                                   E N+V+W +++    QNG
Sbjct: 213 RVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNG 272

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
           +  EA+EFF  M+  G  PN VT+  +L A  +   +  G S    A  +  G L   + 
Sbjct: 273 KDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRK--GFLHDVYV 330

Query: 381 -ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            + +VD+ ++ GR K+A+  ++D      +  W A++GG
Sbjct: 331 SSALVDMYAKCGRVKDAR-IIFDTMVSRNVVSWNAMIGG 368



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 15/231 (6%)

Query: 32  QKASVQKLETPAIRTDSVSCGSESDKFSSVHQV------FDEVPD----LNVVSATTIIG 81
           Q A V ++   +   D  SC +     S   QV      F E  D    LNVVS T+I+ 
Sbjct: 207 QAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVA 266

Query: 82  RFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS 141
              +     EA+  F  M      P+  T   V+P+   +  L  G+  H +A + G   
Sbjct: 267 CCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLH 326

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM- 200
           +V+V SA++D+Y K   +++A  +F+   + NVVS+  MI G        +A+ +F  M 
Sbjct: 327 DVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSML 386

Query: 201 ---PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
                 ++V++  ++   +Q G  EE  + F EM  E G+ P      C +
Sbjct: 387 KCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMV 437


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/521 (32%), Positives = 281/521 (53%), Gaps = 63/521 (12%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           + H+VFD++P+ N      +   +++   +++ I LF +M  L++ P+ FTF  ++ S  
Sbjct: 3   NAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCV 62

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT- 178
            +  L  G+++H +  K G ++N FV + ++D+Y    +I  A RVF +    NV+++T 
Sbjct: 63  KINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTA 122

Query: 179 ------------------------------TMICGLLK-------RERFE---------- 191
                                         TMI G ++       RE F+          
Sbjct: 123 MINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSW 182

Query: 192 -----------DAL---KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-L 236
                      D +   +LF+EMP RNV SWNA+IGGY++ G   E ++ F  ML +G +
Sbjct: 183 NTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTV 242

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
           VPN +TL   + A A + AL +GK  H  A     K +V+V N+L+  YAKCG +E +L 
Sbjct: 243 VPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALD 302

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VF  +  +++++WN +I G A +G G +A+  F  M+I G  P+G+T +G+L AC H GL
Sbjct: 303 VFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGL 362

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VE G+SYF     +   + + EHY C+VDLL R+G    A +F+  +P +     W ALL
Sbjct: 363 VEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALL 422

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C+++ NVEL E A  +++  +P++ ++YVMLSN     G+W +V+ ++  M++ G  +
Sbjct: 423 GACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKK 482

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +PGCS IE+   +  F + D  H   ++IY  LR+ T+ +R
Sbjct: 483 LPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLR 523



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 70/126 (55%)

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
           E+A K+F ++P  N   WNAM  GYSQ   +++ + LF +M    ++PN  T P  + + 
Sbjct: 2   ENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSC 61

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
             I AL  G+  H   +K   + + FV  +LI  YA  G++  +  VF ++ ERN++ W 
Sbjct: 62  VKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWT 121

Query: 311 AVICGY 316
           A+I GY
Sbjct: 122 AMINGY 127



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 6/178 (3%)

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ME++  VFD++ E N   WNA+  GY+QN   ++ I  F +M+   + PN  T   +L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C     +++G        ++      P     ++D+ +  G    A     ++  +  + 
Sbjct: 61  CVKINALKEGEEVHCFV-IKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEM-IERNVI 118

Query: 411 FWKALLGG----CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
            W A++ G    C + +   L + A  R + L    +S Y+   + +     +D + N
Sbjct: 119 AWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPN 176


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 161/444 (36%), Positives = 261/444 (58%), Gaps = 10/444 (2%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     Q+FD +P+ ++ S   ++  +      E A   F +M + +      ++ ++I 
Sbjct: 52  KIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTA----SWNTMIS 107

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
             +    ++  ++L      V    N    +A++  Y++   ++ A ++FE     +VV+
Sbjct: 108 GFSQNGMMDQARELFL----VMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVA 163

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +T MI G +K  + E A K F+EMP +N+V+WNAMI GY +  + E  + LF  M+  G 
Sbjct: 164 WTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGF 223

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN S+L   ++  +N++AL +GK  H    K     ++  G SL+S Y KCG +ED+  
Sbjct: 224 RPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWK 283

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F  + ++++VTWNA+I GYAQ+G GE+A+  F++MR  G++P+ +T + +L ACNH G 
Sbjct: 284 LFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGF 343

Query: 357 VEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           V+ G  YF+ + + D G+  KP+HY C+VDLL R G+  EA + +  +PF P    +  L
Sbjct: 344 VDLGIEYFN-SMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTL 402

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           LG C+IH N+EL EFAA+ +L LDPE  + YV L+N  +   +WD+V+ +RR MK+  + 
Sbjct: 403 LGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVI 462

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNH 499
           + PG SWIE+KS VH F +GDR H
Sbjct: 463 KTPGYSWIEVKSVVHEFRSGDRIH 486



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 145/345 (42%), Gaps = 46/345 (13%)

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFED-------THN---------------------- 171
           SNV   + ++  +I+   +  A RVFE        T N                      
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 172 ---PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
              P++ SY  M+   L     E A   F +MP ++  SWN MI G+SQ G  ++A  LF
Sbjct: 63  IPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF 122

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKS-FHACAVKFLGKLDVFVGNSLISFYAK 287
           + M     V N  +    I        L + K  F    V+      V    ++I+ + K
Sbjct: 123 LVM----PVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVR-----SVVAWTAMITGFMK 173

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
            G +E +   F+++  +N+VTWNA+I GY +N + E  ++ F+RM  +G RPN  +L  +
Sbjct: 174 FGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSV 233

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L  C++   ++ G     Q   + P          ++ +  + G  ++A +    +P   
Sbjct: 234 LLGCSNLSALKLG-KQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QK 291

Query: 408 GIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
            +  W A++ G   H   E  L  F   R   + P+ ++   +LS
Sbjct: 292 DVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLS 336


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 167/450 (37%), Positives = 259/450 (57%), Gaps = 33/450 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  ++FDE+P  +VVS   +I  +A+   Y+EA+ LF  M+ +N+RP E T+ +V+ +  
Sbjct: 148 SAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACA 207

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               + LG+Q+H+W    G  SN+ + +A++DLY K   +E A                 
Sbjct: 208 HSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA----------------- 250

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CGL            FQ + +++V+SWN +IGGY+     +EA+ LF EMLR G  PN
Sbjct: 251 --CGL------------FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 296

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLV 297
             T+   + A A++ A+ +G+  H    K L  +     +  SLI  YAKCG +E +  V
Sbjct: 297 DVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 356

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +  +++ +WNA+I G+A +GR + + + F RMR  GI P+ +T +GLL AC+H+G++
Sbjct: 357 FNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGML 416

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + G   F     +     K EHY CM+DLL  SG FKEA+E +  +  +P    W +LL 
Sbjct: 417 DLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLK 476

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H NVEL E  A+ ++ ++PE+ SSY++LSN  + AG+W++V+ IR  +  K M +V
Sbjct: 477 ACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKV 536

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           PGCS IE+ S V  FV GD+ H  N EIY 
Sbjct: 537 PGCSSIEVDSVVFEFVVGDKFHPQNREIYG 566



 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 222/419 (52%), Gaps = 5/419 (1%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D       VF+ + + N +   T+I   A       ++ L+  M+ L + P+ +TF  ++
Sbjct: 12  DGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLL 71

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            S    +    G+Q+H    K+G   +++V ++++ +Y++   +E+A +VF+ + + +VV
Sbjct: 72  KSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVV 131

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           SYT +I G   R     A KLF E+P ++VVSWNAMI GY++TG  +EA+ LF EM++  
Sbjct: 132 SYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMN 191

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+ ST    + A A+  ++ +G+  H+         ++ + N+LI  Y+KCG +E + 
Sbjct: 192 VRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETAC 251

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +F  L+ +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H G
Sbjct: 252 GLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLG 311

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            ++ G            G+         ++D+ ++ G  + A + +++      +  W A
Sbjct: 312 AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ-VFNSMLHKSLSSWNA 370

Query: 415 LLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           ++ G  +H  ++     F+  R + ++P+D+ ++V L +A S +G  D   +I R M +
Sbjct: 371 MIFGFAMHGRADASFDLFSRMRKIGIEPDDI-TFVGLLSACSHSGMLDLGRHIFRSMTQ 428



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 44/88 (50%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           ++RT  +   ++     + HQVF+ +   ++ S   +I  FA     + +  LFSRM  +
Sbjct: 335 SLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI 394

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            I P + TF  ++ + +    L+LG+ +
Sbjct: 395 GIEPDDITFVGLLSACSHSGMLDLGRHI 422


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 159/444 (35%), Positives = 259/444 (58%), Gaps = 10/444 (2%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     ++F ++P+ + VS  T++  + +  + E A   F  M + +  PS   + ++I 
Sbjct: 22  KLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDT-PS---WNTMIT 77

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                + ++  + L      +    NV   +A++  Y++   ++ A ++FE     +VV+
Sbjct: 78  GFAQNQQMDKARDLFL----IMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVA 133

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +T MI G +K  R   A +LF++MP +N+V+WNAMI GY +  R E+ V LF  M+  G+
Sbjct: 134 WTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGI 193

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN STL  A++  + ++AL +G+  H    K     D   G SLIS Y KCG +ED   
Sbjct: 194 QPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWK 253

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F ++  R++VTWNA+I GYAQ+G G++A+  F+ M   G++P+ +T + +L ACNH G 
Sbjct: 254 LFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGF 313

Query: 357 VEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            + G  YF  +  +D G++ KP+HY CMVDLL R+G+  EA + +  +PF P    +  L
Sbjct: 314 TDLGVKYF-HSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTL 372

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           LG C+IH N E+ EFA++++L LDP   + YV L+N  +   +WD+V+ +R+ MK   + 
Sbjct: 373 LGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVV 432

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNH 499
           + PG SWIE+KS  H F +GD+ H
Sbjct: 433 KTPGYSWIEVKSMAHQFRSGDKFH 456



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 10/284 (3%)

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L++ V   S +  +  K   ++EA  +F     P+ VSY TM+   ++    E A   F+
Sbjct: 3   LKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFE 62

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +MP ++  SWN MI G++Q  + ++A +LF+ M  + +V  ++ +   +      +AL  
Sbjct: 63  DMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSAL-- 120

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
            K F     K      V    ++I+ Y K G +  +  +F+K+ E+N+VTWNA+I GY +
Sbjct: 121 -KLFEKAPFK-----SVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIE 174

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           N R E+ ++ F  M   GI+PN  TL   L  C+    ++ G     Q   + P      
Sbjct: 175 NHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQ-VHQLVCKSPLCDDTT 233

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
               ++ +  + G  ++  +    +P    +  W A++ G   H
Sbjct: 234 AGTSLISMYCKCGVLEDGWKLFVQVP-RRDVVTWNAMISGYAQH 276


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 178/527 (33%), Positives = 286/527 (54%), Gaps = 32/527 (6%)

Query: 11  SLSLNKLSKLHS------LAPN-----YLIETQK--ASVQKLETPAIRTDSVSCGS---- 53
           SLSLN+    ++      + PN     +L++  K  + V ++   AI T S   G     
Sbjct: 108 SLSLNQSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQVMQIHCHAIITGSFYYGYLQNT 167

Query: 54  ------ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
                 E++K    +QVF ++   + VS   +I  +AK+ H  EA+     M+ L ++P 
Sbjct: 168 LMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPD 227

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGL--QSNVFVGSAILDLYIKLSSIEEATRV 165
           EFT   ++     L D  LGK +HAW  + GL   SN+ + +A+LD+Y+K   +  A  +
Sbjct: 228 EFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSI 287

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F      + +S+ TMI G  K    E A   F++MP R++VSWN++I GY+Q G      
Sbjct: 288 FNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQ 347

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF  M+ E + P+  T+   + AAA I AL  G+  H   V+   K+D F+G++ I  Y
Sbjct: 348 RLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMY 407

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            KCGS++ + +VF ++TE+++  W  +I G+A +G G +A++ F  M+   + PN VT +
Sbjct: 408 WKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQ-EYVMPNQVTFV 466

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
            +L AC+H+G V +G   F+  K     +PG+   EHY C+VDLL RSGRF E K+ +  
Sbjct: 467 AVLTACSHSGFVSQGLRIFNSMKERYGIEPGV---EHYGCLVDLLGRSGRFSEVKDVIEM 523

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P  P    W A+L  C+ + N+E+ E A + +L L+PE    YV+LSN  + +G+W + 
Sbjct: 524 MPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSNIYATSGRWKHS 583

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
             IR  M+ +G+ +  GCS + +   +H FV  D+ H    EI ++L
Sbjct: 584 DKIREIMESRGVKKTAGCSSVVVDGIIHEFVAADKRHPRWIEIQSIL 630



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 126/291 (43%), Gaps = 16/291 (5%)

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYT------TMICGLLKRERFEDALKLFQE-M 200
           A L L  K S+ +   ++       N++  T       +   +   E  + A+ LF+   
Sbjct: 33  ATLILLEKCSTRDHFKQILAQIMRINLIGQTFPMSRLILFSAITHPENLDMAVLLFRHHT 92

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
           PH N+  +N MI   S +    ++   +  +L   + PN ST    + A+  ++ +    
Sbjct: 93  PHPNLYIYNTMISALSLS--LNQSFAFYNSLLSSCIYPNRSTFLFLLQASKFLSQV---M 147

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
             H  A+        ++ N+L+  Y +   M  +  VF ++   + V++N +I GYA+ G
Sbjct: 148 QIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKG 207

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
              EA++F   M   G++P+  T+LGLL  C   G  + G S    A +E  G++K  + 
Sbjct: 208 HNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSV--HAWIERRGLIKSSNL 265

Query: 381 ACMVDLLSRSGRFKEAK--EFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
                LL    + KE +  + ++++        W  ++ G     N+E+  
Sbjct: 266 ILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAH 316


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 175/470 (37%), Positives = 260/470 (55%), Gaps = 35/470 (7%)

Query: 49   VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
            + CGS  D       VF  +   +V+S T +IG  A Q    +AI LF +M     RP +
Sbjct: 578  IRCGSLQD----ARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVK 633

Query: 109  FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             TF S++   T+   L+ GK++ A+    G + +  VG+A++  Y K  S+ +A  VF+ 
Sbjct: 634  STFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFD- 692

Query: 169  THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                          +MP R++VSWN +I GY+Q G  + AV   
Sbjct: 693  ------------------------------KMPSRDIVSWNKIIAGYAQNGLGQTAVEFA 722

Query: 229  IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             +M  + +VPN  +    + A ++ +AL  GK  HA  VK   + DV VG +LIS YAKC
Sbjct: 723  YQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKC 782

Query: 289  GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            GS  ++  VFD + E+N+VTWNA+I  YAQ+G   +A+ FF  M   GI+P+G T   +L
Sbjct: 783  GSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSIL 842

Query: 349  WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
             ACNH GLV +GY  FS  + E   +   EHY C+V LL R+ RF+EA+  +  +PF P 
Sbjct: 843  SACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPD 902

Query: 409  IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
               W+ LLG C+IH N+ L E AA   L L+  + + Y++LSN  + AG+WD+V+ IRR 
Sbjct: 903  AAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRV 962

Query: 469  MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            M+ +G+ + PG SWIE+ + +H F+  DR+H    EIYA L+  + ++ E
Sbjct: 963  MEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEE 1012



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/412 (31%), Positives = 204/412 (49%), Gaps = 46/412 (11%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS          VF+     +V+S  ++I   A+   YE A  LF  M    + P   T
Sbjct: 479 CGS----LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F SV+      E L LGKQ+H   T+ GLQ +V +G+A++++YI+               
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIR--------------- 579

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                      CG L     +DA  +F  + HR+V+SW AMIGG +  G + +A+ LF +
Sbjct: 580 -----------CGSL-----QDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQ 623

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  EG  P  ST    +    + A L  GK   A  +    +LD  VGN+LIS Y+K GS
Sbjct: 624 MQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGS 683

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           M D+  VFDK+  R+IV+WN +I GYAQNG G+ A+EF  +M+   + PN  + + LL A
Sbjct: 684 MTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNA 743

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C+    +E+G   ++   + KL+    +     A ++ + ++ G   EA+E ++D   + 
Sbjct: 744 CSSFSALEEGKRVHAEIVKRKLQGDVRVG----AALISMYAKCGSQGEAQE-VFDNIIEK 798

Query: 408 GIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            +  W A++     H  ++  LG F       + P D S++  + +A + AG
Sbjct: 799 NVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKP-DGSTFTSILSACNHAG 849



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 213/457 (46%), Gaps = 56/457 (12%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I +L  C S   L    K+HS       +  KA  Q+   P ++   +S   +       
Sbjct: 132 ISILTACYSPAELENGKKIHS-------QIIKAGYQR--DPRVQNSLLSMYGKCGDLPRA 182

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            QVF  +   +VVS  T++G +A++ + +E + LF +M    I P + T+ +++ + T  
Sbjct: 183 RQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTP 242

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L+ GK++H    + GL S++ VG+A++ + ++   ++ A + F+ T + +VV Y    
Sbjct: 243 SMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVY---- 298

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                                      NA+I   +Q G N EA   +  M  +G+  N +
Sbjct: 299 ---------------------------NALIAALAQHGHNVEAFEQYYRMRSDGVALNRT 331

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A +   AL  GK  H+   +     DV +GN+LIS YA+CG +  +  +F  +
Sbjct: 332 TYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM 391

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +R++++WNA+I GYA+     EA+  +++M+  G++P  VT L LL AC ++       
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS------- 444

Query: 362 SYFSQAKL--ED---PGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           S ++  K+  ED    G+    H A  ++++  R G   EA+           I  W ++
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSM 503

Query: 416 LGGCQIHSNVELGE--FAARRILALDPEDVSSYVMLS 450
           + G   H + E     F   +   L+P++++   +LS
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 172/358 (48%), Gaps = 33/358 (9%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
            HQVF E+P  +V+S  ++I  +A+Q   ++A  LF  M      P++ T+ S++ +  +
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
             +L  GK++H+   K G Q +  V +++L +Y K                         
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGK------------------------- 175

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
            CG L R R     ++F  +  R+VVS+N M+G Y+Q    +E + LF +M  EG+ P+ 
Sbjct: 176 -CGDLPRAR-----QVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDK 229

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T    + A    + L  GK  H   V+     D+ VG +L++   +CG ++ +   F  
Sbjct: 230 VTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKG 289

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
             +R++V +NA+I   AQ+G   EA E + RMR +G+  N  T L +L AC+ +  +E G
Sbjct: 290 TADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG 349

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               S    ED      +    ++ + +R G   +A+E  Y +P    I  W A++ G
Sbjct: 350 KLIHSHIS-EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLIS-WNAIIAG 405



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 181/378 (47%), Gaps = 39/378 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  V CG       S  Q F    D +VV    +I   A+  H  EA   + RM   
Sbjct: 269 ALVTMCVRCGD----VDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            +  +  T+ S++ + +  + L  GK +H+  ++ G  S+V +G+A++ +Y +       
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYAR------- 377

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG L + R     +LF  MP R+++SWNA+I GY++     
Sbjct: 378 -------------------CGDLPKAR-----ELFYTMPKRDLISWNAIIAGYARREDRG 413

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+ L+ +M  EG+ P   T    + A AN +A   GK  H   ++   K +  + N+L+
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALM 473

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + Y +CGS+ ++  VF+    R++++WN++I G+AQ+G  E A + F+ M+   + P+ +
Sbjct: 474 NMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNI 533

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLY 401
           T   +L  C +   +E G       ++ + G+ L       ++++  R G  ++A+   +
Sbjct: 534 TFASVLSGCKNPEALELGKQI--HGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFH 591

Query: 402 DLPFDPGIGFWKALLGGC 419
            L     +  W A++GGC
Sbjct: 592 SLQHRD-VMSWTAMIGGC 608



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 34/259 (13%)

Query: 105 RPSEF---TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
           RP+E    T+ +++ + T    L   K++HA   +  +  ++F+ + ++++Y+K  S+  
Sbjct: 21  RPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVL- 79

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
                                         DA ++F+EMP R+V+SWN++I  Y+Q G  
Sbjct: 80  ------------------------------DAHQVFKEMPRRDVISWNSLISCYAQQGFK 109

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           ++A  LF EM   G +PN  T    + A  + A L  GK  H+  +K   + D  V NSL
Sbjct: 110 KKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSL 169

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           +S Y KCG +  +  VF  ++ R++V++N ++  YAQ    +E +  F +M   GI P+ 
Sbjct: 170 LSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDK 229

Query: 342 VTLLGLLWACNHTGLVEKG 360
           VT + LL A     ++++G
Sbjct: 230 VTYINLLDAFTTPSMLDEG 248



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 121/255 (47%), Gaps = 45/255 (17%)

Query: 4   LLCICRSSLSLNKLSKL--HSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           +L +C SS  L++  K+  + L   Y ++T            +    +S  S+S   +  
Sbjct: 639 ILKVCTSSACLDEGKKVIAYILNSGYELDT-----------GVGNALISAYSKSGSMTDA 687

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VFD++P  ++VS   II  +A+    + A+    +M   ++ P++F+F S++ + ++ 
Sbjct: 688 REVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSF 747

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  GK++HA   K  LQ +V VG+A++ +Y K  S  EA  VF++    NV       
Sbjct: 748 SALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNV------- 800

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                                   V+WNAMI  Y+Q G   +A+  F  M +EG+ P+ S
Sbjct: 801 ------------------------VTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGS 836

Query: 242 TLPCAIIAAANIAAL 256
           T   +I++A N A L
Sbjct: 837 TFT-SILSACNHAGL 850



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 7/220 (3%)

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
            K  HA  V+     D+F+ N LI+ Y KC S+ D+  VF ++  R++++WN++I  YAQ
Sbjct: 46  AKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQ 105

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
            G  ++A + FE M+  G  PN +T + +L AC     +E G    SQ  ++      P 
Sbjct: 106 QGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQI-IKAGYQRDPR 164

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVE--LGEFAARRI 435
               ++ +  + G    A++    + P D  +  +  +LG     + V+  LG F     
Sbjct: 165 VQNSLLSMYGKCGDLPRARQVFAGISPRD--VVSYNTMLGLYAQKAYVKECLGLFGQMSS 222

Query: 436 LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
             + P+ V +Y+ L +A +     D    I +   E+G+ 
Sbjct: 223 EGISPDKV-TYINLLDAFTTPSMLDEGKRIHKLTVEEGLN 261


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 169/465 (36%), Positives = 273/465 (58%), Gaps = 42/465 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+   D ++VS  T+I  F++   + EA+  F  M+L  +     T  SV+P+ + LE 
Sbjct: 170 LFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLER 229

Query: 124 LNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           L++GK++HA+  +   L  N FVGSA++D+Y     +E   RVF+             I 
Sbjct: 230 LDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDH------------IL 277

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHS 241
           G                   R +  WNAMI GY++ G +E+A+ LFIEM++  GL+PN +
Sbjct: 278 G-------------------RRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTT 318

Query: 242 TLPCAIIAAAN-IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           T+   + A  + +AA+  GK  HA A++ +   D+ VG++L+  YAKCG +  S  VF++
Sbjct: 319 TMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNE 378

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERM-----RINGIRPNGVTLLGLLWACNHTG 355
           +  +N++TWN +I     +G+GEEA+E F+ M     R    +PN VT + +  AC+H+G
Sbjct: 379 MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSG 438

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWK 413
           L+ +G + F + K +       +HYAC+VDLL R+G+ +EA E +  +P  FD  +G W 
Sbjct: 439 LISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDK-VGAWS 497

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           +LLG C+IH NVELGE AA+ +L L+P   S YV+LSN  S AG W+    +R+ M++ G
Sbjct: 498 SLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMG 557

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + + PGCSWIE + +VH F+ GD +H  +++++  L + +E++R+
Sbjct: 558 VKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRK 602



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 182/364 (50%), Gaps = 21/364 (5%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           P  +  S    +    + + + EAI  +  M +   RP  F F +V+ + + L+DL  G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 129 QLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           Q+HA A K G   S+V V + ++++Y K   I + T     T+N  +  Y        K 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTF----TNNALMAMYA-------KL 161

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
            R +D+  LF+    R++VSWN MI  +SQ+ R  EA+  F  M+ EG+  +  T+   +
Sbjct: 162 GRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVL 221

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
            A +++  L +GK  HA  ++    ++  FVG++L+  Y  C  +E    VFD +  R I
Sbjct: 222 PACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRI 281

Query: 307 VTWNAVICGYAQNGRGEEA-IEFFERMRINGIRPNGVTLLGLLWACNHT-GLVEKGYSYF 364
             WNA+I GYA+NG  E+A I F E +++ G+ PN  T+  ++ AC H+   + KG    
Sbjct: 282 ELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIH 341

Query: 365 SQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           + A      ML  +    + +VD+ ++ G    ++    ++P +  +  W  L+  C +H
Sbjct: 342 AYAIRN---MLASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMH 397

Query: 423 SNVE 426
              E
Sbjct: 398 GKGE 401



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 12/203 (5%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEFTFGSVI 115
           +  S  +VFD +    +     +I  +A+    E+A+ LF  M+ +  + P+  T  SV+
Sbjct: 265 QVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVM 324

Query: 116 PSST-ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           P+   +L  +  GK++HA+A +  L S++ VGSA++D+Y K   +  + RVF +  N NV
Sbjct: 325 PACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNV 384

Query: 175 VSYTTMICGLLKRERFEDALKLFQEM---------PHRNVVSWNAMIGGYSQTGRNEEAV 225
           +++  +I       + E+AL+LF+ M            N V++  +    S +G   E +
Sbjct: 385 ITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGL 444

Query: 226 NLFIEMLRE-GLVPNHSTLPCAI 247
           NLF  M  + G+ P      C +
Sbjct: 445 NLFYRMKHDHGVEPTSDHYACVV 467


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 164/465 (35%), Positives = 259/465 (55%), Gaps = 12/465 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD +   +++   TII  + +     + I LF   L+    P  FT   VI     L  
Sbjct: 72  IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHE-LVHEYLPDNFTLPCVIKGCARLGV 130

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP----------- 172
           +  GKQ+H  A K+G  S+VFV  +++++Y K   I+ A +VF+   +            
Sbjct: 131 VQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG 190

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+VS+  MI G +K   F+ AL+LF +MP  ++V+WN MI GY   G+  +AV +F  ML
Sbjct: 191 NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMML 250

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           + G  P+H+TL   + A + +A LG G+  H+   K   +LD  +G SLI  YAKCG +E
Sbjct: 251 KLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIE 310

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +L VF  + ++ +  W A+I G   +G    A+  F  M   G++PN +  +G+L ACN
Sbjct: 311 SALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACN 370

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H GLV+ G  YF     E       EHY C+VD+L R+G  +EAK  + ++P  P    W
Sbjct: 371 HAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIW 430

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LLGG + H  +++GE+AA+R++ + PE +  Y++LSN  + +G W+ VS++R  M ++
Sbjct: 431 MSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKR 490

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           G  + PGCS +E K  +H F+ GD +H    EIYA +    E+++
Sbjct: 491 GFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLK 535



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 164/383 (42%), Gaps = 87/383 (22%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLY--IKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           +QLHA++ K  + ++ FV S +L LY   K++ +  A  +F+     +++ + T+I   +
Sbjct: 33  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 92

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           + +   D + LF E+ H                                  +P++ TLPC
Sbjct: 93  ENQFSHDGIVLFHELVHE--------------------------------YLPDNFTLPC 120

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER- 304
            I   A +  +  GK  H  A+K     DVFV  SL++ Y+KCG ++ +  VFD + ++ 
Sbjct: 121 VIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKD 180

Query: 305 ----------NIVTWNAVICGYAQNGRGEEAIEFFERMRI-------------------- 334
                     N+V+WNA+I GY ++G  + A+E F +M I                    
Sbjct: 181 VVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFM 240

Query: 335 -----------NGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHY 380
                       G RP+  TL+ +L A +   ++ KG   +SY  +   E  G+L     
Sbjct: 241 DAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTS-- 298

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILAL 438
             ++++ ++ G  + A      +     +G W A++ G  IH  +N  L  F       L
Sbjct: 299 --LIEMYAKCGCIESALTVFRAIQ-KKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGL 355

Query: 439 DPEDVSSYVMLSNALSVAGKWDN 461
            P  +  ++ + NA + AG  D+
Sbjct: 356 KPNAI-IFIGVLNACNHAGLVDD 377



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 147/368 (39%), Gaps = 87/368 (23%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S  F S  ++F ++P  ++V+   +I  +     + +A+ +F  ML L  RPS  T  S
Sbjct: 204 KSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVS 263

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ + + L  L  G+ +H++  K G + +  +G++++++Y K   IE A  VF       
Sbjct: 264 VLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKK 323

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V  +T +I GL                                  G    A+ LF+EM +
Sbjct: 324 VGHWTAIIVGL-------------------------------GIHGMANHALALFLEMCK 352

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            GL PN                          A+ F+G L+              G ++D
Sbjct: 353 TGLKPN--------------------------AIIFIGVLNAC---------NHAGLVDD 377

Query: 294 SLLVFDKL-----TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
               FD +      E  +  +  ++    + G  EEA    E M I+   PN V  + LL
Sbjct: 378 GRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPIS---PNKVIWMSLL 434

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV---DLLSRSGRFKE---AKEFLYD 402
               + G ++ G  Y +Q  +E    + PE   C +   ++ + SG +++    +E +Y 
Sbjct: 435 GGSRNHGKIDIG-EYAAQRVIE----VAPETIGCYILLSNMYAASGMWEKVSHVREMMYK 489

Query: 403 LPF--DPG 408
             F  DPG
Sbjct: 490 RGFRKDPG 497


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 174/518 (33%), Positives = 286/518 (55%), Gaps = 44/518 (8%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C    +L    ++H+    ++I+T+      L    +RT  +    + D      +
Sbjct: 58  LLNACLDKRALRDGQRVHA----HMIKTRY-----LPATYLRTRLLIFYGKCDCLEDARK 108

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           V DE+P+ NVVS T +I R+++  H  EA+ +F+ M+  + +P+EFTF +V+ S      
Sbjct: 109 VLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASG 168

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGKQ+H    K    S++FVGS++LD+Y K   I+EA  +FE              C 
Sbjct: 169 LGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFE--------------C- 213

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                           +P R+VVS  A+I GY+Q G +EEA+ +F  +  EG+ PN+ T 
Sbjct: 214 ----------------LPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTY 257

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A + +A L  GK  H   ++        + NSLI  Y+KCG++  +  +FD + E
Sbjct: 258 ASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPE 317

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKGYS 362
           R  ++WNA++ GY+++G G E +E F  MR    ++P+ VTLL +L  C+H  + + G +
Sbjct: 318 RTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLN 377

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
            F      + G  KP  EHY C+VD+L R+GR  EA EF+  +P  P  G   +LLG C+
Sbjct: 378 IFDGMVAGEYGT-KPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 436

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H +V++GE   RR++ ++PE+  +YV+LSN  + AG+W +V+N+R  M +K +T+ PG 
Sbjct: 437 VHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGR 496

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           SWI+ +  +H F   DR H   +E+ A ++  + ++++
Sbjct: 497 SWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 534



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 164/324 (50%), Gaps = 13/324 (4%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+ +   +++P S    +  L + L   A  +G +       A+L+  +   ++ +  RV
Sbjct: 16  PTNYVLQTILPISQLCSNGRLQEALLEMAM-LGPEMGFHGYDALLNACLDKRALRDGQRV 74

Query: 166 ----FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
                +  + P     T ++    K +  EDA K+  EMP +NVVSW AMI  YSQTG +
Sbjct: 75  HAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHS 134

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
            EA+ +F EM+R    PN  T    + +    + LG+GK  H   VK+     +FVG+SL
Sbjct: 135 SEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSL 194

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           +  YAK G ++++  +F+ L ER++V+  A+I GYAQ G  EEA+E F R+   G+ PN 
Sbjct: 195 LDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNY 254

Query: 342 VTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           VT   LL A +   L++ G   + +  + +L    +L+      ++D+ S+ G    A+ 
Sbjct: 255 VTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS----LIDMYSKCGNLSYARR 310

Query: 399 FLYDLPFDPGIGFWKALLGGCQIH 422
              ++P    I  W A+L G   H
Sbjct: 311 LFDNMPERTAIS-WNAMLVGYSKH 333


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 172/497 (34%), Positives = 283/497 (56%), Gaps = 10/497 (2%)

Query: 30  ETQKASVQKLETPAIRT--DSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH 87
           ET +A  +++   ++ +    VS  +   +      +F+ +PD  +VS   +I  + +  
Sbjct: 214 ETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNG 273

Query: 88  HYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
              +A++ FSRML  + + P EFT  SV+ +   L  +++GKQ+HA+  +  +     V 
Sbjct: 274 LNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVT 333

Query: 147 SAILDLYIKLSSIEEATRVFEDT--HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN 204
           +A++ +Y K  S+E A  V +     + NV+S+T ++ G +K    + A ++F  M +R+
Sbjct: 334 NALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRD 393

Query: 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
           VV+W AMI GY Q G N+EA+ LF  M+R G  PN  T+   +   A++A L  GK  H 
Sbjct: 394 VVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHC 453

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN-IVTWNAVICGYAQNGRGE 323
            A++ L +    V NS+++ YA+ GS+  +  VFD++  R   VTW ++I   AQ+G GE
Sbjct: 454 KAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGE 513

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYA 381
           +A+  FE M   G++P+ +T +G+L AC H G V++G  YF Q  L+D   + PE  HYA
Sbjct: 514 DAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQ--LQDKHGIVPEMSHYA 571

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441
           CMVDLL+R+G F EA+EF+  +P +P    W +LL  C++H N +L E AA ++L++DP 
Sbjct: 572 CMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPG 631

Query: 442 DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHM 501
           +  +Y  LSN  S  G+W++ + I +  K+K + +  G SW  I ++VHVF   D  H  
Sbjct: 632 NSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQ 691

Query: 502 NDEIYAVLRSCTEQIRE 518
            D +Y       + I++
Sbjct: 692 RDTVYRTAAKMWDDIKK 708



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 176/346 (50%), Gaps = 42/346 (12%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S + +    VF E+P+ + VS T ++    +   + EAI +F  M+   + P++FT  
Sbjct: 107 AKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLT 166

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ S  A E   +G+++H++  K+GL S V V +++L++Y K    E A  VFE     
Sbjct: 167 NVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPER 226

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +V S+  M+       R + AL LF+ MP R +VSWNA+I GY+Q G N +A+  F  ML
Sbjct: 227 SVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRML 286

Query: 233 R-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK----FLGKLDVFVGNSLISFYAK 287
               + P+  T+   + A AN+  + +GK  HA  ++    ++G+    V N+LIS YAK
Sbjct: 287 SYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQ----VTNALISMYAK 342

Query: 288 CGSMEDSLLV---------------------------------FDKLTERNIVTWNAVIC 314
            GS+E++  V                                 FD ++ R++V W A+I 
Sbjct: 343 SGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIV 402

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           GY QNG  +EA+E F  M  +G  PN  T+  +L  C     +E G
Sbjct: 403 GYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYG 448



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 156/313 (49%), Gaps = 46/313 (14%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSS-----IEEATRVFED--THNPNVVSYTT 179
           G+ +HA A K GL ++ ++ + +L  Y   ++       EA R+F++      NV ++ +
Sbjct: 42  GRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNS 101

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           ++    K  R  DA  +F EMP R+ VSW  M+ G ++ GR  EA+ +F++M+ +GL P 
Sbjct: 102 LLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPT 161

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             TL   + + A   A G+G+  H+  VK      V V NS+++ Y KCG  E +  VF+
Sbjct: 162 QFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFE 221

Query: 300 KLTERN-------------------------------IVTWNAVICGYAQNGRGEEAIEF 328
           ++ ER+                               IV+WNAVI GY QNG   +A+ F
Sbjct: 222 RMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWF 281

Query: 329 FERM-RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMV 384
           F RM   + + P+  T+  +L AC + G+V  G   ++Y  ++++   G +       ++
Sbjct: 282 FSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTN----ALI 337

Query: 385 DLLSRSGRFKEAK 397
            + ++SG  + A+
Sbjct: 338 SMYAKSGSVENAR 350



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 41/148 (27%)

Query: 257 GMGKSFHACAVKFLGKLDVFVGNSLISF-------------------------------- 284
           G G++ HA AVK       ++ N+L+S+                                
Sbjct: 40  GAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTW 99

Query: 285 ------YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
                 YAK G + D+  VF ++ ER+ V+W  ++ G  + GR  EAI+ F  M  +G+ 
Sbjct: 100 NSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLS 159

Query: 339 PNGVTLLGLLWACNHT---GLVEKGYSY 363
           P   TL  +L +C  T   G+  K +S+
Sbjct: 160 PTQFTLTNVLSSCAATEARGVGRKVHSF 187


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 288/500 (57%), Gaps = 16/500 (3%)

Query: 30  ETQKASVQKLETPAIRTDS-----VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFA 84
           ET +A  ++++   +R++S     VS  +   +      +F+ + + ++VS   II  + 
Sbjct: 215 ETARAVFERMK---VRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYN 271

Query: 85  KQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNV 143
           +    + A+  FSRML  + + P EFT  SV+ +   L  L +GKQ+H++  + G+  + 
Sbjct: 272 QNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSS 331

Query: 144 FVGSAILDLYIKLSSIEEATRVFEDT--HNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
            + +A++  Y K  S+E A R+ +     + NV+S+T ++ G +K    + A ++F  M 
Sbjct: 332 QIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMN 391

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
           +R+V++W AMI GY Q G+N+EA+ LF  M+R G  PN  TL   + A A++A LG GK 
Sbjct: 392 NRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQ 451

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN-IVTWNAVICGYAQNG 320
            H  A++ L +  V V N++I+ YA+ GS+  +  VFD++  R   VTW ++I   AQ+G
Sbjct: 452 IHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG 511

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE-- 378
            GE+AI  FE M   G++P+ VT +G+  AC H G ++KG  Y+ Q  L + G++ PE  
Sbjct: 512 LGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQM-LNEHGIV-PEMS 569

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           HYACMVDLL+R+G   EA EF+  +P  P    W +LL  C++  N +L E AA ++L++
Sbjct: 570 HYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSI 629

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
           DP++  +Y  L+N  S  G+W++ + I +  K+K + +  G SW  ++SKVHVF   D  
Sbjct: 630 DPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVL 689

Query: 499 HHMNDEIYAVLRSCTEQIRE 518
           H   D I        E+I++
Sbjct: 690 HPQRDAICKKAAEMWEEIKK 709



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 170/337 (50%), Gaps = 34/337 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  ++S + +    VF ++P+ + VS T ++    +   + +A+  F  M+   + PS+
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           F   +V+ S  A E   +G+++H++  K+GL S V V +++L +Y K    E A  VFE 
Sbjct: 164 FMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 223

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               +  S+  M+     + R + AL +F+ M  R++VSWNA+I GY+Q G ++ A+  F
Sbjct: 224 MKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFF 283

Query: 229 IEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
             ML    + P+  T+   + A AN+  L MGK  H+  ++        + N+LIS YAK
Sbjct: 284 SRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAK 343

Query: 288 CGSME-------------------DSLL--------------VFDKLTERNIVTWNAVIC 314
            GS+E                    +LL              VFD +  R+++ W A+I 
Sbjct: 344 SGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIV 403

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           GY QNG+ +EA+E F  M  +G  PN  TL  +L AC
Sbjct: 404 GYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSAC 440



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 185/407 (45%), Gaps = 53/407 (13%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS----SIEEATRVF 166
           F  ++  S    + + G+ +HA A K GL  + ++ + +L  Y +         EA R+F
Sbjct: 28  FARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLF 87

Query: 167 EDT--HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           +D      N  ++ +++    K  R  DA  +F +MP R+ VSW  M+ G ++ GR  +A
Sbjct: 88  DDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDA 147

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           V  F++M+ EGL P+   L   + + A   A G+G+  H+  +K      V V NS++  
Sbjct: 148 VKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYM 207

Query: 285 YAKCGSMEDSLLVFDKLT-------------------------------ERNIVTWNAVI 313
           Y KCG  E +  VF+++                                ER+IV+WNA+I
Sbjct: 208 YGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAII 267

Query: 314 CGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKL 369
            GY QNG  + A++FF RM   + + P+  T+  +L AC +  +++ G   +SY  +  +
Sbjct: 268 AGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGM 327

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFL-YDLPFDPGIGFWKALLGGCQIHSNVELG 428
                +       ++   ++SG  + A+  +   +  D  +  + ALL G      V+LG
Sbjct: 328 PYSSQI----MNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEG-----YVKLG 378

Query: 429 EFA-ARRIL-ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           +   AR +   ++  DV ++  +       G+ D    + R M   G
Sbjct: 379 DTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSG 425


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  317 bits (812), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 183/512 (35%), Positives = 290/512 (56%), Gaps = 27/512 (5%)

Query: 30  ETQKASVQKLETPAIRTDSVSCGSESDKFSSV---------HQVFDEVPDLNVVSATTII 80
           + ++   Q ++T  IR D ++  +E  +FS+V          ++F  +   N  S  T+I
Sbjct: 26  DLKQLHAQMIKTAQIR-DPLA-AAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 83

Query: 81  GRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
              ++ +   +A+ +F  M+   ++ P+ FTF SV  +    E L  G+Q+H  A K GL
Sbjct: 84  RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 143

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVF---------------EDTHNPNVVSYTTMICGL 184
            S+ FV S ++ +Y+    +E+A R+F               +   + +VV +  MI G 
Sbjct: 144 DSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGY 203

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           ++    E A  LF EMP R+VVSWN MI GY+Q+G  +EAV +F EM    + PN+ TL 
Sbjct: 204 VRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLV 263

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + A + + AL +GK  H  AV+    +D  +G++LI  YAKCGS+E +L VF+ L +R
Sbjct: 264 SVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKR 323

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           N+VTW+ +I G A +GR ++ ++ FE M   G+ P+ VT +GLL AC+H GLV +G  +F
Sbjct: 324 NVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFF 383

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
                      + EHY CMVDLL R+G  +E++E + ++P  P    WKALLG C++H N
Sbjct: 384 DHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGN 443

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           VE+G+  A  ++ L P D  SYV LSN  +  G W+ V+ +R  MKE  + + PGCSWIE
Sbjct: 444 VEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIE 503

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           +   +H F+  D +H  + +I+++L+  +  +
Sbjct: 504 LDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNL 535


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  317 bits (812), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 160/446 (35%), Positives = 252/446 (56%), Gaps = 37/446 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+E+   + VS   II    +     + + LF  ML   + P +FT+GSV+ +    + 
Sbjct: 397 IFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQA 456

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN G ++H    K G+  + FVGSA++D+Y K                          CG
Sbjct: 457 LNYGTEIHGRIIKSGMGLDWFVGSALVDMYGK--------------------------CG 490

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           +L      +A K+   +  +  VSWN++I G+S   ++E A   F +ML  G++P++ T 
Sbjct: 491 MLM-----EAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTY 545

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A + +GK  HA  +K     DV++ ++L+  Y+KCG+M+DS L+F+K  +
Sbjct: 546 ATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPK 605

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ VTW+A+IC YA +G GE+AI  FE M++  ++PN    + +L AC H G V+KG  Y
Sbjct: 606 RDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHY 665

Query: 364 FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F +       DP M   EHY+CMVDLL RSG+  EA + +  +PF+     W+ LL  C+
Sbjct: 666 FQKMLSHYGLDPQM---EHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCK 722

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +  NVE+ E A   +L LDP+D S+YV+L+N  ++ G W  V+ +R  MK   + + PGC
Sbjct: 723 MQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGC 782

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIY 506
           SWIE++ +VH F+ GD+ H  ++EIY
Sbjct: 783 SWIEVRDEVHTFLVGDKAHPRSEEIY 808



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 150/291 (51%), Gaps = 31/291 (10%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
             +FD +P+ +VVS  +++  +       ++I +F RM  L I     TF  ++ + + +
Sbjct: 92  QSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGI 151

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           ED  LG Q+H  A ++G +++V  GSA++D+Y K                          
Sbjct: 152 EDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC------------------------- 186

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                 ++ +DA ++F+EMP RN+V W+A+I GY Q  R  E + LF +ML+ G+  + S
Sbjct: 187 ------KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS 240

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T      + A ++A  +G   H  A+K     D  +G + +  YAKC  M D+  VF+ L
Sbjct: 241 TYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTL 300

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
                 ++NA+I GYA+  +G +A++ F+ ++ N +  + ++L G L AC+
Sbjct: 301 PNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACS 351



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 129/244 (52%)

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           + TF  ++   + L+ LN GKQ+H      G    ++V + +L  Y K S +  A +VF+
Sbjct: 6   KLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFD 65

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                +V+S+ T+I G         A  LF  MP R+VVSWN+++  Y   G N +++ +
Sbjct: 66  RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F+ M    +  +++T    + A + I   G+G   H  A++   + DV  G++L+  Y+K
Sbjct: 126 FVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C  ++D+  VF ++ ERN+V W+AVI GY QN R  E ++ F+ M   G+  +  T   +
Sbjct: 186 CKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 348 LWAC 351
             +C
Sbjct: 246 FRSC 249



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 183/405 (45%), Gaps = 47/405 (11%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T ++   ++ ++     +VF+ +P+    S   II  +A+Q    +A+ +F  +   N
Sbjct: 276 IGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNN 335

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +   E +    + + + ++    G QLH  A K GL  N+ V + ILD+Y K  ++ EA 
Sbjct: 336 LGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEAC 395

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            +FE                               EM  R+ VSWNA+I  + Q     +
Sbjct: 396 LIFE-------------------------------EMERRDAVSWNAIIAAHEQNEEIVK 424

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            ++LF+ MLR  + P+  T    + A A   AL  G   H   +K    LD FVG++L+ 
Sbjct: 425 TLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVD 484

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG + ++  +  +L E+  V+WN++I G++   + E A  +F +M   GI P+  T
Sbjct: 485 MYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYT 544

Query: 344 LLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFL 400
              +L  C +   +E G    +Q  KL+    L  + Y  + +VD+ S+ G  ++++   
Sbjct: 545 YATVLDVCANMATIELGKQIHAQILKLQ----LHSDVYIASTLVDMYSKCGNMQDSRLMF 600

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGE-----FAARRILALDP 440
              P    +  W A++     H    LGE     F   ++L + P
Sbjct: 601 EKAPKRDYVT-WSAMICAYAYHG---LGEKAINLFEEMQLLNVKP 641



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           DV   N+LI  YA  G+M  +  +FD + ER++V+WN+++  Y  NG   ++IE F RMR
Sbjct: 71  DVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMR 130

Query: 334 INGIRPNGVTLLGLLWACN---HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
              I  +  T   +L AC+     GL  + +    Q   E+  +      + +VD+ S+ 
Sbjct: 131 SLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTG----SALVDMYSKC 186

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            +  +A     ++P +  +  W A++ G
Sbjct: 187 KKLDDAFRVFREMP-ERNLVCWSAVIAG 213



 Score = 43.9 bits (102), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 40/207 (19%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+  D       +F++ P  + V+ + +I  +A     E+AI LF  M LLN++P+   
Sbjct: 590 CGNMQDS----RLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTI 645

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F SV+ +   +  ++ G  LH +               +L  Y                 
Sbjct: 646 FISVLRACAHMGYVDKG--LHYF-------------QKMLSHY---------------GL 675

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNEEAVNLFI 229
           +P +  Y+ M+  L +  +  +ALKL + MP   + V W  ++      G  E A   F 
Sbjct: 676 DPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFN 735

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAAL 256
            +L+  L P  S+   A +  AN+ A+
Sbjct: 736 SLLQ--LDPQDSS---AYVLLANVYAI 757


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 173/526 (32%), Positives = 280/526 (53%), Gaps = 63/526 (11%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + +   Q+FD++PD N+    ++   +A+   Y E ++LF +M  ++IRP+ FTF  V+ 
Sbjct: 148 RMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLK 207

Query: 117 SSTALEDLNLGKQLH--------------------------------------------A 132
           S   +  L  G+Q+H                                            A
Sbjct: 208 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 267

Query: 133 WATKVG---LQSNVFVGSAILDL---------------YIKLSSIEEATRVFEDTHNPNV 174
           W + +    L +++     + DL               YI+   + EA ++F +  N +V
Sbjct: 268 WTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDV 327

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           + + T++ G       E    LF+EMP RN+ SWNA+IGGY+  G   E +  F  ML E
Sbjct: 328 MFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSE 387

Query: 235 GLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             VP N +TL   + A A + AL +GK  H  A     K +V+VGN+L+  YAKCG +E+
Sbjct: 388 SDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIEN 447

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           ++ VF  +  +++++WN +I G A + RG +A+  F +M+  G +P+G+T +G+L AC H
Sbjct: 448 AISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTH 507

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLVE G++YF     +   M + EHY CMVD+L+R+GR ++A  F+  +P +     W 
Sbjct: 508 MGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWA 567

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LLG C+I+ NVEL E A +R++ L+P++ ++YVMLSN    AG+W++V+ ++  M++ G
Sbjct: 568 GLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTG 627

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
             ++PGCS IE+   V  F + D  H   +EIY VLR   + +R F
Sbjct: 628 FKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSF 673



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 138/303 (45%), Gaps = 25/303 (8%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           +N  +      IC  LKR  +  A +LF ++P  N+  WN+M  GY+Q+    E V LF 
Sbjct: 131 YNEYITPKLVTICATLKRMTY--ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFF 188

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M    + PN  T P  + +   I AL  G+  H   +K   + + FVG +LI  Y+  G
Sbjct: 189 QMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGG 248

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           ++ D+  +F ++ ERN+V W ++I GY  +     A   F+      +         +LW
Sbjct: 249 TVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDV---------VLW 299

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
               +G +E G    ++    +        +  ++   + +G   EA E L++   +  I
Sbjct: 300 NIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNV-EALEGLFEEMPERNI 358

Query: 410 GFWKALLGGCQIHSNV---ELGEFAARRILA---LDPEDVSSYVMLSNALSVA----GKW 459
             W AL+GG   H+ +    LG F  +R+L+   + P D +   +LS    +     GKW
Sbjct: 359 FSWNALIGG-YAHNGLFFEVLGSF--KRMLSESDVPPNDATLVTVLSACARLGALDLGKW 415

Query: 460 DNV 462
            +V
Sbjct: 416 VHV 418


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/463 (36%), Positives = 262/463 (56%), Gaps = 7/463 (1%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F    Q+FDE+ D NVVS  T+I  FAK  +    + LF  M    + P +FT   ++  
Sbjct: 179 FECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLL 238

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L +  LGK +HA   K    SN+ + +A+LD+Y+K + ++ A +VF+     + VS+
Sbjct: 239 CGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSW 298

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            T+I G  K    E A  LF ++P R++VSWN++I GY+Q G       LF  M  E + 
Sbjct: 299 NTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVK 358

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T+   I A A + AL  G+  H  AVK L K++ F G++LI  Y KCGS+E + ++
Sbjct: 359 PDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVI 418

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++ E+++ TW  +I G+A +G G +A+E F  M+    +PN VT + +L AC+H+GLV
Sbjct: 419 FNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLV 477

Query: 358 EKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           ++G   FS  K     +PG+   EHY C+VDLL RSGR  +A   +  +P +P    W A
Sbjct: 478 DEGLKIFSSMKKRYSIEPGV---EHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGA 534

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           +L  C++H N+EL E A   +L L+PE    Y++LSN  +  G+W    +IR  M  +G+
Sbjct: 535 VLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV 594

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            ++ GCS + +   VH F   ++ H    +I ++L   T ++R
Sbjct: 595 KKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMR 637


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 173/504 (34%), Positives = 274/504 (54%), Gaps = 40/504 (7%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDS-VSCGSESDKFSSVH 62
           +L +C S + +N  S+LH L  +  +E        +++P   T + +    +        
Sbjct: 254 VLSVCASEIMINFGSQLHGLVVSSGLE--------MDSPVANTFALIDIYFKCRDVEMAR 305

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD+   +++V  T +I  +        A+ +F  +L   +R +  T  SV+P+   L 
Sbjct: 306 KIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLA 365

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LGK+LH    K G   + +VGSAI+D+Y K                          C
Sbjct: 366 ALTLGKELHGHILKNGHGGSCYVGSAIMDMYAK--------------------------C 399

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     R + A + F  +  ++ V WN+MI   SQ G+ EEA++LF +M   G   +  +
Sbjct: 400 G-----RLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVS 454

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +  A+ A AN+ AL  GK  HA  ++   + D+F  ++LI  Y+KCG+++ +  VFD + 
Sbjct: 455 ISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTME 514

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+N V+WN++I  Y  +GR ++++  F  M  +GI+P+ VT L ++ AC H G V++G  
Sbjct: 515 EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIH 574

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF     E   M + EHYACMVDL  R+GR  EA   +  +PF P  G W  LLG C++H
Sbjct: 575 YFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLH 634

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            NVEL E A+R +  LDP++   YV+LSN  + AG+W++V  IR  MKE+G+ +VPGCSW
Sbjct: 635 GNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSW 694

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIY 506
           I++ +  H+FV  DR+H  + +IY
Sbjct: 695 IDVNNTTHMFVAADRSHPQSSQIY 718



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 147/349 (42%), Gaps = 47/349 (13%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  F     ++ A+  + +ML     P ++TF  VI +   L  + LG+ +H     +G
Sbjct: 118 MIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMG 177

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
            + +VFVGS+++  Y +   I                                DA  LF 
Sbjct: 178 FELDVFVGSSLIKFYSENGCIH-------------------------------DARYLFD 206

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            MP ++ V WN M+ GY + G  + A  +F+EM R    PN  T  C +   A+   +  
Sbjct: 207 RMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINF 266

Query: 259 GKSFHACAVKFLGKLDVFVGNS--LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
           G   H   V    ++D  V N+  LI  Y KC  +E +  +FD+ T  +IV   A+I GY
Sbjct: 267 GSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGY 326

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376
             NG    A+E F  +    +R N VTL  +L AC        G +  +  K     +LK
Sbjct: 327 VLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC-------AGLAALTLGKELHGHILK 379

Query: 377 PEH------YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
             H       + ++D+ ++ GR   A +    +  D     W +++  C
Sbjct: 380 NGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-DKDAVCWNSMITSC 427



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 33/240 (13%)

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ + T    L+ G+Q HA     G+  N  +G+ +L +Y+   +  +A  +F      
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQ---- 106

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                L+L+   P      WN MI G++  G+ + A+  + +ML
Sbjct: 107 ---------------------LRLWCSEP------WNWMIRGFTMMGQFDFALLFYFKML 139

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSM 291
             G +P+  T P  I A   + ++ +G+  H   ++F+G +LDVFVG+SLI FY++ G +
Sbjct: 140 GCGTLPDKYTFPYVIKACGGLNSVALGRVVHD-KIQFMGFELDVFVGSSLIKFYSENGCI 198

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            D+  +FD++  ++ V WN ++ GY +NG  + A   F  MR     PN VT   +L  C
Sbjct: 199 HDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVC 258



 Score = 42.0 bits (97), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 6/200 (3%)

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           + L  G+  HA  +      +  +G  L+  Y  CG+  D+  +F +L       WN +I
Sbjct: 60  SGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMI 119

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            G+   G+ + A+ F+ +M   G  P+  T   ++ AC   GL           K++  G
Sbjct: 120 RGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACG--GLNSVALGRVVHDKIQFMG 177

Query: 374 M-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEF 430
             L     + ++   S +G   +A+     +P   G+  W  +L G   + + +   G F
Sbjct: 178 FELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGV-LWNVMLNGYVKNGDWDNATGVF 236

Query: 431 AARRILALDPEDVSSYVMLS 450
              R    +P  V+   +LS
Sbjct: 237 MEMRRTETNPNSVTFACVLS 256


>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 179/461 (38%), Positives = 266/461 (57%), Gaps = 16/461 (3%)

Query: 69  PDLN-VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI------PSSTAL 121
           P+ N  VS T+ I    K +++ +A   F +ML   + P+  T  +++      PS T++
Sbjct: 47  PNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSI 106

Query: 122 EDLNLGKQLHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
                G  LH  A K G   N V VG+A++D+Y K   ++ A  VF+     N+VS+ TM
Sbjct: 107 ---TFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTM 163

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G +K    +DALKLF ++P +NVVSW  +IGG+ +    EEA+  F EM   G+VP+ 
Sbjct: 164 IDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDF 223

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   I A AN+ ALG+G   H   +K   + +V V NSLI  YA+CG +E +  VFD 
Sbjct: 224 VTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDG 283

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +++RN+V+WN++I G+A NG  ++A+ FF  M+  G+ PNGV+    L AC+H GL+++G
Sbjct: 284 MSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEG 343

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              F+  K +     + EHY C+VDL SR+GR KEA + +  +P  P      +LL  C+
Sbjct: 344 LKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACR 403

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
              +VEL E   +  + L P   S+YV+ SN  +  GKWD  S +RREMKE+G+ +    
Sbjct: 404 TQGDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAF 463

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
           S IEI S +H FV+GD+ H  ND IY+ L     ++  FEL
Sbjct: 464 SSIEIDSGIHKFVSGDKYHEENDYIYSAL-----ELLSFEL 499



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 4/176 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD++P  NVVS T +IG F K+  YEEA+  F  M L  + P   T  ++I +   L 
Sbjct: 178 KLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLG 237

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LG  +H    K   + NV V ++++D+Y +   IE A +VF+     N+VS+ ++I 
Sbjct: 238 ALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIV 297

Query: 183 GLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           G       + AL  F+ M       N VS+ + +   S  G  +E + +F ++ R+
Sbjct: 298 GFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRD 353


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/518 (34%), Positives = 280/518 (54%), Gaps = 65/518 (12%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T ++    + +  S   ++F+ +P+ N+ S   II  +A+                  
Sbjct: 312 IGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDK--------------G 357

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +   E +      +   ++    G Q+H  + K   QSN+ V +AILD+Y K  ++ EA 
Sbjct: 358 LGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEAC 417

Query: 164 RVFEDTHNPNVVSYTTMI------------------------------------------ 181
            VFE+  + + VS+  +I                                          
Sbjct: 418 LVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSK 477

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG++     E A KL   +  + VVSWNA+I G+S   ++EEA   F +ML  G+ P++ 
Sbjct: 478 CGMM-----EKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNF 532

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    +   AN+  + +GK  HA  +K   + D ++ ++L+  Y+KCG+M+D  L+F+K 
Sbjct: 533 TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKA 592

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             R+ VTWNA++CGYAQ+G GEEA++ FE M++  ++PN  T L +L AC H GLVEKG 
Sbjct: 593 PNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGL 652

Query: 362 SYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            YF  + L + G L P  EHY+C+VD++ RSG+  +A E +  +PF+     W+ LL  C
Sbjct: 653 HYF-HSMLSNYG-LDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSIC 710

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +IH NVE+ E AA  IL L+PED ++YV+LSN  + AG W+ V+ +R+ M+  G+ + PG
Sbjct: 711 KIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPG 770

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           CSWIEIKS+VH F+ GD+ H  + EIY  L   T++++
Sbjct: 771 CSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMK 808



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 142/295 (48%), Gaps = 1/295 (0%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF  +    +  + L  GKQ HA       +  VFV + ++ +YIK S +E A +VF+  
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              + VS+  M+ G   R     A KLF  MP R+VVSWN++I GY   G + + +++F+
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M R G V + +T    + + +++   G G   H  AVK     DV  G++L+  YAKC 
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++ S+  F  + E+N V+W+A+I G  QN      +E F+ M+  G+  +  T   +  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +C     +  G      A   D G       A + D+  +     +A++    LP
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATL-DMYMKCNNLSDAQKLFNSLP 337



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 109/477 (22%), Positives = 201/477 (42%), Gaps = 109/477 (22%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++FD +P+ +VVS  ++I  +     + + I +F +M  +       TF  V+ S ++L
Sbjct: 128 QKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSL 187

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           ED   G Q+H  A K+G   +V  GSA+LD+Y K   ++ + + F      N VS++ +I
Sbjct: 188 EDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAII 247

Query: 182 CGLLKRERFEDALKLFQEMPH--------------------------------------- 202
            G ++ +     L+LF+EM                                         
Sbjct: 248 AGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFG 307

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC-AIIAAANIAALGMG-- 259
            +VV   A +  Y +     +A  LF  +      PNH+     AII     +  G+G  
Sbjct: 308 TDVVIGTATLDMYMKCNNLSDAQKLFNSL------PNHNLQSYNAIIVGYARSDKGLGLD 361

Query: 260 -----KSFHACAV---------------KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                 +F ACAV               K L + ++ V N+++  Y KCG++ ++ LVF+
Sbjct: 362 EVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFE 421

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++  R+ V+WNA+I  + QNG  E+ +  F   RI   R    + +G+            
Sbjct: 422 EMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGI------------ 469

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
                                  ++D+ S+ G  ++A E L+D   +  +  W A++ G 
Sbjct: 470 ----------------------ALIDMYSKCGMMEKA-EKLHDRLAEQTVVSWNAIISGF 506

Query: 420 QIHSNVELGE--FAARRILALDPEDVSSYVML---SNALSVA-GKWDNVSNIRREMK 470
            +    E  +  F+    + +DP++ +   +L   +N ++V  GK  +   I++E++
Sbjct: 507 SLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQ 563


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 271/466 (58%), Gaps = 32/466 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+S   +S  QVF+ + + +VVS T++I  +A++   + ++ LF  M    I P  FT  
Sbjct: 297 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTIT 356

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++ +      L  GK +H +  +  +QS++FV +A++D+Y K                 
Sbjct: 357 TILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAK----------------- 399

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG +      DA  +F EM  +++VSWN MIGGYS+     EA+NLF+EM 
Sbjct: 400 ---------CGSMG-----DAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM- 444

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           +    PN  T+ C + A A++AAL  G+  H   ++    LD  V N+L+  Y KCG++ 
Sbjct: 445 QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALG 504

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            + L+FD + E+++V+W  +I GY  +G G EAI  F  MR +GI P+ V+ + +L+AC+
Sbjct: 505 LARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACS 564

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+GL+++G+ +F+  +       K EHYAC+VDLL+R+G   +A +F+  +P +P    W
Sbjct: 565 HSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIW 624

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALL GC+I+ +V+L E  A  +  L+PE+   YV+L+N  + A KW+ V  +R  +  +
Sbjct: 625 GALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRR 684

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G+ + PGCSWIEIK KVH+FVTGD +H + ++I  +L+    +++E
Sbjct: 685 GLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKE 730



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 182/377 (48%), Gaps = 36/377 (9%)

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE----FTFGSVIPSSTALE 122
           E  D  +      I RF +  +   A      M L+N  P       T+ SV+     L+
Sbjct: 62  ETIDCKITDYNIEICRFCELGNLRRA------MELINQSPKPDLELRTYCSVLQLCADLK 115

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +  G+++H+      ++ +  +GS ++ +Y+    + E  R+F+   N  V  +  ++ 
Sbjct: 116 SIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMN 175

Query: 183 G------------LLKR------ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           G            L KR       R E A KLF E+  R+V+SWN+MI GY   G +E+ 
Sbjct: 176 GYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKG 235

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           ++LF +ML  G+  + +T+   +   +N   L +G++ H  A+K     ++ + N L+  
Sbjct: 236 LDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDM 295

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+K G++  ++ VF+ + ER++V+W ++I GYA+ G  + ++  F  M   GI P+  T+
Sbjct: 296 YSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTI 355

Query: 345 LGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
             +L AC  TGL+E G   ++Y  + K++    +       ++D+ ++ G   +A     
Sbjct: 356 TTILHACACTGLLENGKDVHNYIKENKMQSDLFVS----NALMDMYAKCGSMGDAHSVFS 411

Query: 402 DLPFDPGIGFWKALLGG 418
           ++     I  W  ++GG
Sbjct: 412 EMQVKD-IVSWNTMIGG 427


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 277/470 (58%), Gaps = 41/470 (8%)

Query: 51  CGSESDKFSSVHQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           CG   D F+    +F  +P   NVVS T +IG   +      A  LFSRM   N++P+EF
Sbjct: 350 CGELDDAFN----IFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEF 405

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T+ +V+ +S  +    L  Q+HA   K   Q    VG+A+L  Y KL + EEA       
Sbjct: 406 TYSTVLTASIPI----LLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEA------- 454

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                                   L +F+ + H++VV+W+AM+  YSQ G  + A N+FI
Sbjct: 455 ------------------------LSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFI 490

Query: 230 EMLREGLVPNHSTLPCAIIAAAN-IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           +M  +G+ PN  T+  AI A A+  A +  G+ FHA ++K+  +  + VG++L++ YA+ 
Sbjct: 491 KMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARK 550

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS++ + +VF++ T+R++V+WN++I GYAQ+G  +EA++ F +M   GI  +G T L ++
Sbjct: 551 GSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVI 610

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
             C H GLV++G  YF    ++       EHY+CMVDL SR+G+  E    +  +PF  G
Sbjct: 611 VGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAG 670

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W+ LLG C++H NVELG+ AA+++L L+P+D ++YV+LSN  + AG+W     +R+ 
Sbjct: 671 AMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKL 730

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           M  K + +  GCSWI+IK+KVH F+  D++H ++++IYA L++ T ++++
Sbjct: 731 MDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQ 780



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 41/335 (12%)

Query: 127 GKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           G+QLH    K G  ++ V VG+A++D+Y+K   +E+   VFE                  
Sbjct: 118 GEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEG----------------- 160

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                         MP RNVV+W +++ GY Q     + + LF  M  EG+ PN  T   
Sbjct: 161 --------------MPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTS 206

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + A A+  A+ +G+  HA +VKF  +  VFV NSLI+ Y+KCG +E++  VF ++  R+
Sbjct: 207 VLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRD 266

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC---NHTGLVEKGYS 362
           +V+WN ++ G   N    EA++ F   R +  + +  T   ++  C       L  + +S
Sbjct: 267 MVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHS 326

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              +      G +       ++D  S+ G   +A      +P    +  W A++GGC  +
Sbjct: 327 CVLKHGFHSDGNV----MTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQN 382

Query: 423 SNVELGE--FAARRILALDPEDVSSYVMLSNALSV 455
           +++ L    F+  R   + P + +   +L+ ++ +
Sbjct: 383 ADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPI 417



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 143/288 (49%), Gaps = 32/288 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ +P  NVV+ T+++  + +     + + LF RM    + P+ FTF SV+ +  +   
Sbjct: 157 VFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGA 216

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           ++LG+++HA + K G +S VFV ++++++Y K   +EEA  VF      ++VS+ T++ G
Sbjct: 217 VDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAG 276

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           LL  E   +AL+LF +          A +   SQ                       ST 
Sbjct: 277 LLLNEHQLEALQLFHDS--------RASMAKLSQ-----------------------STY 305

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT- 302
              I   AN+  L + +  H+C +K     D  V  +++  Y+KCG ++D+  +F  +  
Sbjct: 306 STVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPG 365

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            +N+V+W A+I G  QN     A   F RMR + ++PN  T   +L A
Sbjct: 366 SQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA 413



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 13/234 (5%)

Query: 193 ALKLFQEMPHRNVVSWNA----MIGGYSQTGRNE-EAVNLFIEMLREGLVPNHSTLPCAI 247
           A +    MP R+  + ++     I  Y + G+   EA++ F+++ R G V   + +   +
Sbjct: 48  ARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCGRVQG-AAVSRVL 106

Query: 248 IAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
                I     G+  H   VK    + +V VG +L+  Y KCG +ED  +VF+ + +RN+
Sbjct: 107 KVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNV 166

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           VTW +++ GY Q     + +  F RMR  G+ PN  T   +L A    G V+ G    +Q
Sbjct: 167 VTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQ 226

Query: 367 AKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +        +   + C  ++++ S+ G  +EAK     +     +  W  L+ G
Sbjct: 227 SVKFG---CRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVS-WNTLMAG 276


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 273/481 (56%), Gaps = 41/481 (8%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +RT  +    + D       VFD +P+ NVVS T +I  ++++ +  +A+ LF +ML   
Sbjct: 95  LRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSG 154

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
             P+EFTF +V+ S        LG+Q+H+   K+  +++V+VGS++LD+Y K   I EA 
Sbjct: 155 TEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEAR 214

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            +F                               Q +P R+VVS  A+I GY+Q G +EE
Sbjct: 215 GIF-------------------------------QCLPERDVVSCTAIISGYAQLGLDEE 243

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A+ LF  + REG+  N+ T    + A + +AAL  GK  H   ++      V + NSLI 
Sbjct: 244 ALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLID 303

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGV 342
            Y+KCG++  +  +FD L ER +++WNA++ GY+++G G E +E F  M   N ++P+ V
Sbjct: 304 MYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSV 363

Query: 343 TLLGLLWACNHTGLVEKGYSYF---SQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAK 397
           T+L +L  C+H GL +KG   F   +  K+     ++P+  HY C+VD+L R+GR + A 
Sbjct: 364 TVLAVLSGCSHGGLEDKGMDIFYDMTSGKIS----VQPDSKHYGCVVDMLGRAGRVEAAF 419

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           EF+  +PF+P    W  LLG C +HSN+++GEF   ++L ++PE+  +YV+LSN  + AG
Sbjct: 420 EFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAG 479

Query: 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +W++V ++R  M +K +T+ PG SWIE+   +H F   D +H   +E+ A ++  + + +
Sbjct: 480 RWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFK 539

Query: 518 E 518
           E
Sbjct: 540 E 540



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 151/290 (52%), Gaps = 8/290 (2%)

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFE---DTHN-PNVVSYTTMICGLLKRERFEDA 193
           GL +N    + +L+  ++  +I E  RV      TH  P V   T +I   +K +   DA
Sbjct: 53  GLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDA 112

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             +F  MP RNVVSW AMI  YSQ G   +A++LF++MLR G  PN  T    + +    
Sbjct: 113 RHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGS 172

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           +   +G+  H+  +K   +  V+VG+SL+  YAK G + ++  +F  L ER++V+  A+I
Sbjct: 173 SGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAII 232

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ-AKLEDP 372
            GYAQ G  EEA+E F R++  G++ N VT   +L A +    ++ G    +   + E P
Sbjct: 233 SGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVP 292

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
             +  ++   ++D+ S+ G    A+  ++D   +  +  W A+L G   H
Sbjct: 293 SYVVLQN--SLIDMYSKCGNLTYARR-IFDTLHERTVISWNAMLVGYSKH 339


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/451 (36%), Positives = 257/451 (56%), Gaps = 33/451 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            ++  ++FDE+   +VVS   +I  + +  +++EA+ L+  M+  N++P E T  +V+ +
Sbjct: 147 INNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSA 206

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                 + LG+QLH+W    G  SN+ + + ++DLY K   +E A               
Sbjct: 207 CAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA--------------- 251

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               CGL            FQ +  ++V+SWN +IGG++     +EA+ LF EMLR G  
Sbjct: 252 ----CGL------------FQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES 295

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSL 295
           PN  T+   + A A++ A+ +G+  H    K L  +     +  SLI  YAKCG +E + 
Sbjct: 296 PNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAK 355

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VFD +  R++ +WNA+I G+A +G+   A + F +MR NGI P+ +T +GLL AC+H+G
Sbjct: 356 QVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSG 415

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           +++ G   F     +     K EHY CM+DLL   G FKEAKE +  +P +P    W +L
Sbjct: 416 MLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSL 475

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C++H+NVELGE  A+ ++ ++PE+  SYV+LSN  + AG+WD V+ IR  + +KG+ 
Sbjct: 476 LKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIK 535

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           + PGCS IEI S VH F+ GD+ H  N EIY
Sbjct: 536 KAPGCSSIEIDSVVHEFIIGDKFHPRNREIY 566



 Score =  191 bits (486), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 220/419 (52%), Gaps = 5/419 (1%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D  S    +F+ + + N++   T+    A       A+ L+  M+ L + P+ ++F  ++
Sbjct: 13  DGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLL 72

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            S    + L  G+Q+H    K+G   +++V ++++ +Y +   +E+A +VF+ + + +VV
Sbjct: 73  KSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVV 132

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           SYT +I G   R    +A KLF E+  ++VVSWNAMI GY +T   +EA+ L+ +M++  
Sbjct: 133 SYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTN 192

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+ ST+   + A A   ++ +G+  H+         ++ + N LI  Y+KCG +E + 
Sbjct: 193 VKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETAC 252

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +F  L ++++++WN +I G+      +EA+  F+ M  +G  PN VT+L +L AC H G
Sbjct: 253 GLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 312

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            ++ G            G+         ++D+ ++ G  + AK+ ++D      +  W A
Sbjct: 313 AIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQ-VFDSMLTRSLSSWNA 371

Query: 415 LLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           ++ G  +H  +N     F+  R   +DP+D+ ++V L +A S +G  D   +I R M +
Sbjct: 372 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDI-TFVGLLSACSHSGMLDLGRHIFRSMSQ 429


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 173/526 (32%), Positives = 280/526 (53%), Gaps = 63/526 (11%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + +   Q+FD++PD N+    ++   +A+   Y E ++LF +M  ++IRP+ FTF  V+ 
Sbjct: 85  RMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLK 144

Query: 117 SSTALEDLNLGKQLH--------------------------------------------A 132
           S   +  L  G+Q+H                                            A
Sbjct: 145 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 204

Query: 133 WATKVG---LQSNVFVGSAILDL---------------YIKLSSIEEATRVFEDTHNPNV 174
           W + +    L +++     + DL               YI+   + EA ++F +  N +V
Sbjct: 205 WTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDV 264

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           + + T++ G       E    LF+EMP RN+ SWNA+IGGY+  G   E +  F  ML E
Sbjct: 265 MFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSE 324

Query: 235 GLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             VP N +TL   + A A + AL +GK  H  A     K +V+VGN+L+  YAKCG +E+
Sbjct: 325 SDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIEN 384

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           ++ VF  +  +++++WN +I G A + RG +A+  F +M+  G +P+G+T +G+L AC H
Sbjct: 385 AISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTH 444

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLVE G++YF     +   M + EHY CMVD+L+R+GR ++A  F+  +P +     W 
Sbjct: 445 MGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWA 504

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LLG C+I+ NVEL E A +R++ L+P++ ++YVMLSN    AG+W++V+ ++  M++ G
Sbjct: 505 GLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTG 564

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
             ++PGCS IE+   V  F + D  H   +EIY VLR   + +R F
Sbjct: 565 FKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSF 610



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 138/303 (45%), Gaps = 25/303 (8%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           +N  +      IC  LKR  +  A +LF ++P  N+  WN+M  GY+Q+    E V LF 
Sbjct: 68  YNEYITPKLVTICATLKRMTY--ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFF 125

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M    + PN  T P  + +   I AL  G+  H   +K   + + FVG +LI  Y+  G
Sbjct: 126 QMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGG 185

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           ++ D+  +F ++ ERN+V W ++I GY  +     A   F+      +         +LW
Sbjct: 186 TVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDV---------VLW 236

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
               +G +E G    ++    +        +  ++   + +G   EA E L++   +  I
Sbjct: 237 NIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNV-EALEGLFEEMPERNI 295

Query: 410 GFWKALLGGCQIHSNV---ELGEFAARRILA---LDPEDVSSYVMLSNALSVA----GKW 459
             W AL+GG   H+ +    LG F  +R+L+   + P D +   +LS    +     GKW
Sbjct: 296 FSWNALIGG-YAHNGLFFEVLGSF--KRMLSESDVPPNDATLVTVLSACARLGALDLGKW 352

Query: 460 DNV 462
            +V
Sbjct: 353 VHV 355


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 268/461 (58%), Gaps = 32/461 (6%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHY-EEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +  ++FD++ D NV S T +I  + ++  Y EEA+ LF  M+L ++ P+ FTF S + + 
Sbjct: 327 AARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC 386

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L  L +G+Q+   A K+G  S   V ++++ +Y +                       
Sbjct: 387 ANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYAR----------------------- 423

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                     R +DA K F  +  +N++S+N +I  Y++   +EEA+ LF E+  +G+  
Sbjct: 424 --------SGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGA 475

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  T    +  AA+I  +G G+  HA  +K   KL+  V N+LIS Y++CG++E +  VF
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           + + +RN+++W ++I G+A++G   +A+E F +M   G+RPN VT + +L AC+H GLV 
Sbjct: 536 EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVN 595

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +G+ +F     E   + + EHYAC+VD+L RSG   EA +F+  +P+      W+  LG 
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C++H N+ELG+ AA+ I+  +P D ++Y++LSN  +   KWD VSNIR+ MKEK + +  
Sbjct: 656 CRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEA 715

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           GCSW+E+++KVH F  GD +H    EIY  L++ + +I++ 
Sbjct: 716 GCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKL 756



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 187/390 (47%), Gaps = 54/390 (13%)

Query: 37  QKLETPAIRTDSVS----------CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQ 86
           +KL    ++ DSV+          CG + +K +S+ ++     DL  +S + ++  FA  
Sbjct: 90  EKLTQSDLQLDSVTLNSLISLYSKCG-QWEKATSIFRLMGSSRDL--ISWSAMVSCFANN 146

Query: 87  HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFV 145
           +    A+  F  M+     P+E+ F +   + +  E +++G  +  +  K G LQS+V V
Sbjct: 147 NMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCV 206

Query: 146 GSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
           G  ++D+++K                               R     A K+F++MP RN 
Sbjct: 207 GCGLIDMFVK------------------------------GRGDLVSAFKVFEKMPERNA 236

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
           V+W  MI    Q G   EA++LF++M+  G  P+  TL   I A AN+  L +G+  H+ 
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296

Query: 266 AVKFLGKLDVFVGNSLISFYAKC---GSMEDSLLVFDKLTERNIVTWNAVICGYAQN-GR 321
           A++    LD  VG  LI+ YAKC   GSM  +  +FD++ + N+ +W A+I GY Q  G 
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHY 380
            EEA++ F  M +  + PN  T    L AC +   +  G   F+ A KL   G       
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL---GFSSVNCV 413

Query: 381 A-CMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           A  ++ + +RSGR  +A++  +D+ F+  +
Sbjct: 414 ANSLISMYARSGRIDDARK-AFDILFEKNL 442



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  + S +     + FD + + N++S  T+I  +AK  + EEA+ LF+ +    +  S 
Sbjct: 418 ISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASA 477

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF S++  + ++  +  G+Q+HA   K GL+ N  V +A++ +Y +  +IE A +VFED
Sbjct: 478 FTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFED 537

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEA 224
             + NV+S+T++I G  K      AL+LF +M    V    V++ A++   S  G   E 
Sbjct: 538 MEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEG 597

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
              F  M  E G++P      C +
Sbjct: 598 WKHFKSMYTEHGVIPRMEHYACIV 621



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 1/147 (0%)

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           GR  +A++    M+ +G  P+  T    +       +  +G   H    +   +LD    
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 279 NSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           NSLIS Y+KCG  E +  +F  + + R++++W+A++  +A N  G  A+  F  M  NG 
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYF 364
            PN         AC+    V  G S F
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIF 191


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 166/452 (36%), Positives = 268/452 (59%), Gaps = 7/452 (1%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTFGSVIPSSTALEDLNLG 127
           PD+ +  A T+I  +A   +  +A+  +S M   ++  P   TF  ++ + + +  L LG
Sbjct: 98  PDIFI--ANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLG 155

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           + +H+   K+G  S V V + ++ +Y     IE A  VF+ T   +  S+  MI G LK 
Sbjct: 156 EAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKC 215

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
             F+ A ++F+ MP R+VVSW+ MI GY Q  R +E + LF +M+ E + PN S L  A+
Sbjct: 216 GVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNAL 275

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A A++ A+  G+       +   +L V +G +LI  Y+KCGS+E +L VF K+ E+N++
Sbjct: 276 SACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVL 335

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
            W+A+I G A NG+G++A+  F +M + G++PN VT +G+L AC+H+ LV++G S+F   
Sbjct: 336 AWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHS- 394

Query: 368 KLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
            +     LKP   H+ CMVDL  R+G   +A+  +  +PF P    W ALL  C+IH + 
Sbjct: 395 -MTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDT 453

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           ELGE   +R+L LDP     YV+LSN  +  G+WD V+ +RR M+E+ +++ PGCS+I++
Sbjct: 454 ELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDL 513

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
              +H FV GD +H   + IYA L   +++++
Sbjct: 514 GDTIHEFVAGDSSHPQLEMIYAKLGEMSQELK 545



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 99/195 (50%), Gaps = 5/195 (2%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F S  ++F+ +PD +VVS + +I  + ++  ++E + LF  M+   I P+E    + + +
Sbjct: 218 FKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSA 277

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L  +  G+ +  +  +  ++  V +G+A++D+Y K  S+E A  VF      NV+++
Sbjct: 278 CAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAW 337

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           + MI GL    + +DAL LF +M  + V    V++  ++   S +   +E  + F  M  
Sbjct: 338 SAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTS 397

Query: 234 -EGLVPNHSTLPCAI 247
             GL PN     C +
Sbjct: 398 IYGLKPNAHHHCCMV 412


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/413 (38%), Positives = 245/413 (59%), Gaps = 4/413 (0%)

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF  V+ SS  L  + +GK +H    ++GLQ +++V ++++ LY K   I +A +VF++
Sbjct: 135 FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN 194

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               +V S+  ++ G  K    + AL +F+ MP RN+VSW  MI GYSQ+G  ++A++LF
Sbjct: 195 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLF 254

Query: 229 IEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
            EM++E  G+ PN  T+   + A A ++ L  G+  H  A +     +  V  +L + YA
Sbjct: 255 DEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYA 314

Query: 287 KCGSMEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           KCGS+ D+   FDKL   E+N++ WN +I  YA  G G +A+  F  M   GI+P+ +T 
Sbjct: 315 KCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITF 374

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
            GLL  C+H+GLV+ G  YF+          + EHYAC+ DLL R+GR  EA + + ++P
Sbjct: 375 TGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMP 434

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
              G   W +LL  C+ H N+E+ E AAR++  L+PE+  +YV+LSN  + AG+W  V  
Sbjct: 435 MPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDK 494

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +R  +K +G  + PGCSWIEI  K H+F+ GD +H    EIY  L +  E+++
Sbjct: 495 LRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMK 547



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 10/164 (6%)

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           M+  Y+ +G  + +V++F        + ++ T P  + ++  + ++ MGK  H   ++  
Sbjct: 111 MVAFYASSGDIDSSVSVF------NGIGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIG 164

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            + D++V  SLI  Y KCG + D+  VFD +T R++ +WNA++ GY ++G  + A+  FE
Sbjct: 165 LQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFE 224

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
           RM    I    V+   ++   + +GL ++  S F +   ED G+
Sbjct: 225 RMPWRNI----VSWTTMISGYSQSGLAQQALSLFDEMVKEDSGV 264



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 31/182 (17%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTAL 121
           +F+ +P  N+VS TT+I  +++    ++A+ LF  M+  +  +RP+  T  SV+P+   L
Sbjct: 222 IFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQL 281

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  G+Q+H  A ++GL SN  V  A+  +Y K  S+ +A   F+              
Sbjct: 282 STLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFD-------------- 327

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               K  R E           +N+++WN MI  Y+  G   +AV+ F EM++ G+ P+  
Sbjct: 328 ----KLNRNE-----------KNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDI 372

Query: 242 TL 243
           T 
Sbjct: 373 TF 374


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/463 (36%), Positives = 262/463 (56%), Gaps = 7/463 (1%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F    Q+FDE+ D NVVS  T+I  FAK  +    + LF  M    + P +FT   ++  
Sbjct: 114 FECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLL 173

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L +  LGK +HA   K    SN+ + +A+LD+Y+K + ++ A +VF+     + VS+
Sbjct: 174 CGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSW 233

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            T+I G  K    E A  LF ++P R++VSWN++I GY+Q G       LF  M  E + 
Sbjct: 234 NTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVK 293

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T+   I A A + AL  G+  H  AVK L K++ F G++LI  Y KCGS+E + ++
Sbjct: 294 PDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVI 353

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++ E+++ TW  +I G+A +G G +A+E F  M+    +PN VT + +L AC+H+GLV
Sbjct: 354 FNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLV 412

Query: 358 EKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           ++G   FS  K     +PG+   EHY C+VDLL RSGR  +A   +  +P +P    W A
Sbjct: 413 DEGLKIFSSMKKRYSIEPGV---EHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGA 469

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           +L  C++H N+EL E A   +L L+PE    Y++LSN  +  G+W    +IR  M  +G+
Sbjct: 470 VLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGV 529

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            ++ GCS + +   VH F   ++ H    +I ++L   T ++R
Sbjct: 530 KKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMR 572


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 169/452 (37%), Positives = 259/452 (57%), Gaps = 33/452 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  ++FDE+P  +VVS   +I  +A+  +Y+EA+ LF  M+  NIRP E T  +V+ +  
Sbjct: 218 SAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACA 277

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               + LG+Q+H+W    G  SN+ + ++++DLY K   +E A                 
Sbjct: 278 QSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETA----------------- 320

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CGL            F+ + +++V+SWN +IGGY+     +EA+ LF EMLR G  PN
Sbjct: 321 --CGL------------FEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPN 366

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLV 297
             T+   + A A++ A+ +G+  H    K L        +  SLI  YAKCG +E +  V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQV 426

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +  +++ +WNA+I G+A +GR + A + F RMR  GI P+ +T +GLL AC+ +G++
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGML 486

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + G   F     +     K EHY CM+DLL  SG FKEA+E + ++  +P    W +LL 
Sbjct: 487 DLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLK 546

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C+I  NVELGE  A+ ++ ++PE+   YV+LSN  + AG+W+ V+ IR  + +KGM +V
Sbjct: 547 ACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKV 606

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           PGCS IEI S VH F+ GD+ H  N EIY +L
Sbjct: 607 PGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 224/411 (54%), Gaps = 5/411 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ + + N++   T+    A       A+ L+  M+ L + P+ +TF  ++ S    + 
Sbjct: 90  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 149

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+H    K+G   ++FV ++++ +Y++   +E+A +VF+ + + +VVSYT +I G
Sbjct: 150 FKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKG 209

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R   E A KLF E+P ++VVSWNAMI GY++TG  +EA+ LF EM++  + P+ ST+
Sbjct: 210 YASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTM 269

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A   ++ +G+  H+         ++ + NSL+  Y+KCG +E +  +F+ L  
Sbjct: 270 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLY 329

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-YS 362
           +++++WN +I GY      +EA+  F+ M  +G RPN VT+L +L AC H G ++ G + 
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +    K              ++D+ ++ G  + A + +++      +  W A++ G  +H
Sbjct: 390 HVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQ-VFNSILHKSLSSWNAMIFGFAMH 448

Query: 423 --SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
             ++     F+  R + ++P+D+ ++V L +A S +G  D   +I R M +
Sbjct: 449 GRADAAFDIFSRMRKIGIEPDDI-TFVGLLSACSRSGMLDLGRHIFRTMTQ 498



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 123/260 (47%), Gaps = 39/260 (15%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+ +   N++ WN M  G++ +     A+ L++ M+  GL+PN  T P  + + A 
Sbjct: 87  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 146

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------- 304
             A   G+  H   +K    LD+FV  SLIS Y + G +ED+  VFD+   R        
Sbjct: 147 SKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTAL 206

Query: 305 -----------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                  ++V+WNA+I GYA+ G  +EA+E F+ M    IRP+ 
Sbjct: 207 IKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDE 266

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM---LKPEHYACMVDLLSRSGRFKEAKE 398
            T++ ++ AC  +G +E G    S   ++D G    LK  +   ++DL S+ G  + A  
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHSW--IDDHGFGSNLKIVN--SLMDLYSKCGELETACG 322

Query: 399 FLYDLPFDPGIGFWKALLGG 418
               L +   I  W  L+GG
Sbjct: 323 LFEGLLYKDVIS-WNTLIGG 341



 Score = 40.0 bits (92), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 44/88 (50%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           ++RT  +   ++     + HQVF+ +   ++ S   +I  FA     + A  +FSRM  +
Sbjct: 405 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKI 464

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            I P + TF  ++ + +    L+LG+ +
Sbjct: 465 GIEPDDITFVGLLSACSRSGMLDLGRHI 492



 Score = 39.3 bits (90), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 92/209 (44%), Gaps = 18/209 (8%)

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VF+ + E N++ WN +  G+A +     A++ +  M   G+ PN  T   LL +C  +  
Sbjct: 90  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 149

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
            ++G        L+    L    +  ++ +  ++GR ++A++     P    + +  AL+
Sbjct: 150 FKEGQQIHGHV-LKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSY-TALI 207

Query: 417 GGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM- 474
            G      +E    +A+++    P +DV S+  + +  +  G +     + +EM +  + 
Sbjct: 208 KGYASRGYIE----SAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIR 263

Query: 475 -------TRVPGCSW---IEIKSKVHVFV 493
                  T V  C+    IE+  +VH ++
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHSWI 292


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/455 (35%), Positives = 258/455 (56%), Gaps = 31/455 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+ + NV +  ++   + K  ++EE + LF  ML L+IR  E T  SV+ +   L 
Sbjct: 180 RVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLA 239

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL LG+ ++ +  + GL+ N  + ++++D+Y K   ++ A R                  
Sbjct: 240 DLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARR------------------ 281

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                        LF +M  R+VV+W+AMI GYSQ  R  EA++LF EM +  + PN  T
Sbjct: 282 -------------LFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEIT 328

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + + A + AL  GK  H    K   KL V +G +L+ FYAKCGS+E S+ VF K+ 
Sbjct: 329 MVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP 388

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +N+++W  +I G A NG+G++A+E+F  M    + PN VT +G+L AC+H GLV++G  
Sbjct: 389 VKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRD 448

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            F     +     + EHY CMVD+L R+G  +EA +F+ ++P  P    W+ LL  C++H
Sbjct: 449 LFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVH 508

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            NVE+GE + ++++ L+P     Y++LSN  +  G+W++   +R EMKEKG+ + PGCS 
Sbjct: 509 KNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSL 568

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           IE+   +H F   D  H  ++EIY  +    +QI+
Sbjct: 569 IELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIK 603



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 5/211 (2%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P + T  V   ++  +  +  ++FD++   +VV+ + +I  +++     EA+ LF  M  
Sbjct: 260 PTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQK 319

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
            NI P+E T  S++ S   L  L  GK +H +  K  ++  V +G+A++D Y K  S+E 
Sbjct: 320 ANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVES 379

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQ 217
           +  VF      NV+S+T +I GL    + + AL+ F  M  +NV    V++  ++   S 
Sbjct: 380 SIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSH 439

Query: 218 TGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
            G  +E  +LF+ M R+ G+ P      C +
Sbjct: 440 AGLVDEGRDLFVSMSRDFGIEPRIEHYGCMV 470


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/449 (36%), Positives = 263/449 (58%), Gaps = 38/449 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVVS T +I    +      A  LFSRM    + P++FT+ +++ +S A    +L  Q+H
Sbjct: 372 NVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVA----SLPPQIH 427

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   +    VG+A+L  Y KL + EEA                             
Sbjct: 428 AQVIKTNYECTSIVGTALLASYSKLCNTEEA----------------------------- 458

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
             L +F+ +  ++VVSW+AM+  Y+Q G ++ A N+FI+M   GL PN  T+   I A A
Sbjct: 459 --LSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACA 516

Query: 252 N-IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           +  A + +G+ FHA ++K      + V ++L+S YA+ GS+E +  +F++ T+R++V+WN
Sbjct: 517 SPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWN 576

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           +++ GYAQ+G  ++A++ F +M   GI  +GVT L ++  C H GLVE+G  YF  +   
Sbjct: 577 SMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYF-DSMAR 635

Query: 371 DPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
           D G+    EHYACMVDL SR+G+  EA   +  + F  G   W+ LLG C++H NVELG+
Sbjct: 636 DYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGK 695

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
            AA ++L+L+P D ++YV+LSN  S AGKW     +R+ M  K + +  GCSWI+IK+KV
Sbjct: 696 LAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKV 755

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           H F+  D++H ++++IYA LR+ T ++++
Sbjct: 756 HSFIASDKSHPLSEQIYAKLRAMTTKLKQ 784



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 181/408 (44%), Gaps = 54/408 (13%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI------RPSEFTFG 112
           +   Q FDE+P  N +         A++    +A+  F     L++      R       
Sbjct: 55  TGARQAFDEIPHRNTLDHALF--DHARRGSVHQALDHF-----LDVHRCHGGRVGGGALV 107

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            V+    ++ D  LGKQLH    + G  + +V VG++++D+Y+K  S+ +  +VFE    
Sbjct: 108 GVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFE---- 163

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                                       MP RNVV+W +++ GY Q G   + + LF  M
Sbjct: 164 ---------------------------AMPKRNVVTWTSLLTGYIQDGALSDVMELFFRM 196

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             EG+ PN  T    +   A+   + +G+  HA +VKF     VFV NSL++ YAKCG +
Sbjct: 197 RAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLV 256

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN---GIRPNGVTLLGLL 348
           E++ +VF  +  R++V+WN ++ G   NG   EA++ F   R +     +    T++ L 
Sbjct: 257 EEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLC 316

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
                 GL  + +S   +      G +       ++D  S++G+   A +    +     
Sbjct: 317 ANIKQLGLARQLHSSVLKRGFHSYGNV----MTALMDAYSKAGQLGNALDIFLLMSGSQN 372

Query: 409 IGFWKALLGGCQIHSNVELGE--FAARRILALDPEDVSSYVMLSNALS 454
           +  W A++ GC  + +V L    F+  R   + P D +   +L+ +++
Sbjct: 373 VVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVA 420



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 99/190 (52%), Gaps = 6/190 (3%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STALE 122
           +F  +   +VVS + ++  +A+    + A  +F +M +  ++P+EFT  SVI + ++   
Sbjct: 461 IFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTA 520

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            ++LG+Q HA + K      + V SA++ +Y +  SIE A  +FE   + ++VS+ +M+ 
Sbjct: 521 GVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLS 580

Query: 183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLV 237
           G  +    + AL +F++M    +    V++ ++I G +  G  EE    F  M R+ G+ 
Sbjct: 581 GYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGIT 640

Query: 238 PNHSTLPCAI 247
           P      C +
Sbjct: 641 PTMEHYACMV 650


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 277/502 (55%), Gaps = 5/502 (0%)

Query: 16  KLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVS 75
           +LS L  +   ++++ +   V  +   +I     SCG       +  +VFDE P  ++VS
Sbjct: 170 RLSSLGHMILGHVLKLRLELVSHVHNASIHM-FASCGD----MENARKVFDESPVRDLVS 224

Query: 76  ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWAT 135
              +I  + K    E+AIY++  M    ++P + T   ++ S + L DLN GK+ + +  
Sbjct: 225 WNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVK 284

Query: 136 KVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALK 195
           + GL+  + + +A++D++ K   I EA R+F++     +VS+TTMI G  +    + + K
Sbjct: 285 ENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRK 344

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
           LF +M  ++VV WNAMIGG  Q  R ++A+ LF EM      P+  T+   + A + + A
Sbjct: 345 LFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGA 404

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           L +G   H    K+   L+V +G SL+  YAKCG++ ++L VF  +  RN +T+ A+I G
Sbjct: 405 LDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGG 464

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
            A +G    AI +F  M   GI P+ +T +GLL AC H G+++ G  YFSQ K       
Sbjct: 465 LALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNP 524

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
           + +HY+ MVDLL R+G  +EA   +  +P +     W ALL GC++H NVELGE AA+++
Sbjct: 525 QLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKL 584

Query: 436 LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG 495
           L LDP D   YV+L      A  W++    RR M E+G+ ++PGCS IE+   V  F+  
Sbjct: 585 LELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVR 644

Query: 496 DRNHHMNDEIYAVLRSCTEQIR 517
           D++   +++IY  L      +R
Sbjct: 645 DKSRPESEKIYDRLHCLGRHMR 666



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 126/251 (50%), Gaps = 5/251 (1%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P   S     C L +    + ++K+ + + + N+ SWN  I G+S++   +E+  L+ +
Sbjct: 84  DPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQ 143

Query: 231 MLREGLV---PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           MLR G     P+H T P      A++    +G       +K   +L   V N+ I  +A 
Sbjct: 144 MLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFAS 203

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG ME++  VFD+   R++V+WN +I GY + G  E+AI  ++ M   G++P+ VT++GL
Sbjct: 204 CGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGL 263

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           + +C+  G + +G  ++   K     M  P   A M D+ S+ G   EA+    +L    
Sbjct: 264 VSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALM-DMFSKCGDIHEARRIFDNLE-KR 321

Query: 408 GIGFWKALLGG 418
            I  W  ++ G
Sbjct: 322 TIVSWTTMISG 332



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 176/409 (43%), Gaps = 73/409 (17%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML---LLNIRPSEF 109
           SES       ++   + + N+ S    I  F++  + +E+  L+ +ML       RP  F
Sbjct: 98  SESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHF 157

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T+  +      L   +LG  +     K+ L+    V +A + ++     +E A +VF+++
Sbjct: 158 TYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDES 217

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                                          P R++VSWN +I GY + G  E+A+ ++ 
Sbjct: 218 -------------------------------PVRDLVSWNCLINGYKKIGEAEKAIYVYK 246

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            M  EG+ P+  T+   + + + +  L  GK F+    +   ++ + + N+L+  ++KCG
Sbjct: 247 LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCG 306

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNG----------------------------- 320
            + ++  +FD L +R IV+W  +I GYA+ G                             
Sbjct: 307 DIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQ 366

Query: 321 --RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGML 375
             RG++A+  F+ M+ +  +P+ +T++  L AC+  G ++ G   + Y  +  L     L
Sbjct: 367 AKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLS----L 422

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
                  +VD+ ++ G   EA    + +     + +  A++GG  +H +
Sbjct: 423 NVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTY-TAIIGGLALHGD 470


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 177/530 (33%), Positives = 291/530 (54%), Gaps = 41/530 (7%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + LL  C  S SL +  K+H    ++L  T  A    L    +    +SC    ++    
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQ---HFLKNTSNADSSVLHK--LTRLYLSC----NQVVLA 62

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++FDE+P+ +V+    II  +A    ++ AI L+  ML L +RP+++T+  V+ + + L
Sbjct: 63  RRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGL 122

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +  G ++H+ A   GL+S+VFV +A++D Y K   + EA R+F    + +VV++  MI
Sbjct: 123 LAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI 182

Query: 182 CGLLKRERFEDALKLFQEMPH--------------------------------RNVVSWN 209
            G       +DA++L  +M                                  RN VSW+
Sbjct: 183 AGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWS 242

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
           AMIGGY  +   +EA+++F  M   G+ P+ +T+   + A +++AAL  G   H   +  
Sbjct: 243 AMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 302

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
               D  + N+LI  Y+KCG +  +  VF+++   +IV+WNA+I GY  +G G EA+  F
Sbjct: 303 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLF 362

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
             +   G++P+ +T + LL +C+H+GLV +G  +F     +   + + EH  CMVD+L R
Sbjct: 363 HDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGR 422

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML 449
           +G   EA  F+ ++PF+P +  W ALL  C+IH N+ELGE  +++I +L PE   ++V+L
Sbjct: 423 AGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLL 482

Query: 450 SNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           SN  S AG+WD+ ++IR   K+ G+ ++PGCSWIEI   VH FV GD++H
Sbjct: 483 SNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSH 532


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/497 (33%), Positives = 276/497 (55%), Gaps = 39/497 (7%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHH------------------------------ 88
           +   ++FDE+P+ + +S TTII  + K +                               
Sbjct: 209 AEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRG 268

Query: 89  -YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV----GLQSNV 143
            Y EA  +F +M++  I+  EFTF SVI          LGK++HA+  K          +
Sbjct: 269 LYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAM 328

Query: 144 FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
            V +A++  Y K   ++ A  +F      ++VS+  ++ G +     ++A   F EMP +
Sbjct: 329 PVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEK 388

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           N++SW  MI G +Q G  EEA+  F  M  +G  P       AII+ + + +L  G+  H
Sbjct: 389 NILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLH 448

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
           A  V++  +  +  GN+LI+ YA+CG ++ +  +F  +   + ++WNA+I    Q+G+G 
Sbjct: 449 AQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGT 508

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYA 381
           +AIE FE M   GI P+ ++ L ++ AC+H GLV++G  YF    + +   + P  EHYA
Sbjct: 509 QAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDS--MHNVYGVNPDEEHYA 566

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441
            ++DLL R+G+F EAKE +  +PF+PG   W+ALL GC+IH N++LG  AA R+  L P+
Sbjct: 567 RIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQ 626

Query: 442 DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHM 501
              +YV+LSN  +VAG+W++++ +R+ M+++G+ + PGCSWIE+++KVH F+ GD NH  
Sbjct: 627 HDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPE 686

Query: 502 NDEIYAVLRSCTEQIRE 518
             +IY  L     ++R+
Sbjct: 687 VRQIYNYLEQLVLEMRK 703



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 171/392 (43%), Gaps = 78/392 (19%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFA---------------------------- 84
           S+S K +    +FDE+P  ++V+ TT+I  ++                            
Sbjct: 59  SKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAM 118

Query: 85  -----KQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STALEDLNLGKQLHAWATKVG 138
                  H    AI LF  M   N RP  +TF SV+ + +   E     +QLH    K G
Sbjct: 119 ITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSG 178

Query: 139 LQSNVFVGSAILDLYIKLSS---------IEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
                 V +A++  Y+K ++         + EA ++F++  N + +S+TT+I G +K   
Sbjct: 179 TGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNND 238

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            + A +       +  V+WNAMI GY+  G   EA  +F +M+   +  +  T    I  
Sbjct: 239 LDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISV 298

Query: 250 AANIAALGMGKSFHACAVKFLGK----LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            AN     +GK  HA  +K +      + + V N+LI+FY KCG ++ +  +F+K+ ER+
Sbjct: 299 CANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERD 358

Query: 306 IVTWNAVICGY-------------------------------AQNGRGEEAIEFFERMRI 334
           +V+WN ++ GY                               AQ G  EEA++FF RM++
Sbjct: 359 LVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKL 418

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
            G  P      G + +C+  G ++ G    +Q
Sbjct: 419 QGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQ 450



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 179/420 (42%), Gaps = 54/420 (12%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLN--LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
           +IR +   +GS++        ++  L + +HA     G Q    + + ++D+Y K S + 
Sbjct: 6   SIRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLN 65

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQT 218
            A  +F++   P++V+ TT+I         + + K+F + P   R+ V +NAMI  YS  
Sbjct: 66  YARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHN 125

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAAL-GMGKSFHACAVKFLGKLDVFV 277
                A+ LF +M R+   P++ T    + A A +A      +  H   VK        V
Sbjct: 126 HDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSV 185

Query: 278 GNSLISFYAKCGS---------MEDSLLVFDKLTERN------IVT-------------- 308
            N+LIS Y KC +         M ++  +FD++  R+      I+T              
Sbjct: 186 LNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEF 245

Query: 309 -----------WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
                      WNA+I GYA  G   EA E F +M ++ I+ +  T   ++  C + G  
Sbjct: 246 LNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCF 305

Query: 358 EKG---YSYFSQAKLED-PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
             G   ++YF +      P +  P + A ++    + G+   A+E    +P +  +  W 
Sbjct: 306 RLGKEMHAYFLKTVANPAPDVAMPVNNA-LITFYWKCGKVDIAQEIFNKMP-ERDLVSWN 363

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            +L G   + NV   + A      +  +++ S++++ + L+  G  +        MK +G
Sbjct: 364 IILSG---YVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQG 420



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 123/287 (42%), Gaps = 39/287 (13%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           +V C  E+  F      F+E+P+ N++S   +I   A+    EEA+  F+RM L    P 
Sbjct: 371 NVRCMDEAKSF------FNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPC 424

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           ++ F   I S + L  L  G+QLHA   + G +S++  G+A++ +Y +   ++ A  +F 
Sbjct: 425 DYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFI 484

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           +    + +S+  MI  L                                Q G+  +A+ L
Sbjct: 485 NMPCVDAISWNAMIAAL-------------------------------GQHGQGTQAIEL 513

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYA 286
           F EML+EG++P+  +    I A ++   +  G+ +        G   D      +I    
Sbjct: 514 FEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLC 573

Query: 287 KCGSMEDSLLVFDKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           + G   ++  V + +  E     W A++ G   +G  +  IE  ER+
Sbjct: 574 RAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERL 620


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 265/451 (58%), Gaps = 4/451 (0%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N+VS   I+  F +  +++EA+ +F ++  L   P + T  SV+PS    E LN+G+ +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            +  K GL  +  V SA++D+Y K   +     +F              I GL +    +
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 192 DALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
            AL++F+    +    NVVSW ++I G +Q G++ EA+ LF EM   G+ PNH T+P  +
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A  NIAALG G+S H  AV+     +V VG++LI  YAKCG +  S +VF+ +  +N+V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 455

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
            WN+++ G++ +G+ +E +  FE +    ++P+ ++   LL AC   GL ++G+ YF   
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
             E     + EHY+CMV+LL R+G+ +EA + + ++PF+P    W ALL  C++ +NV+L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            E AA ++  L+PE+  +YV+LSN  +  G W  V +IR +M+  G+ + PGCSWI++K+
Sbjct: 576 AEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKN 635

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +V+  + GD++H   D+I   +   ++++R+
Sbjct: 636 RVYTLLAGDKSHPQIDQITEKMDEISKEMRK 666



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 219/468 (46%), Gaps = 50/468 (10%)

Query: 30  ETQKASVQKLETPA-----IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFA 84
           +T +A  + L++ A     I    ++  S  + F+    V   +PD  + S +++I    
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92

Query: 85  KQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF 144
           K   + ++I +FSRM    + P      ++      L    +GKQ+H  +   GL  + F
Sbjct: 93  KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 145 VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP--- 201
           V  ++  +Y++   + +A +VF+   + +VV+ + ++C   ++   E+ +++  EM    
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 202 -HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
              N+VSWN ++ G++++G ++EAV +F ++   G  P+  T+   + +  +   L MG+
Sbjct: 213 IEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272

Query: 261 SFHACAVK---------------FLGK----------------LDVFVGNSLISFYAKCG 289
             H   +K                 GK                ++  V N+ I+  ++ G
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332

Query: 290 SMEDSLLVFDKLTER----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            ++ +L +F+   E+    N+V+W ++I G AQNG+  EA+E F  M++ G++PN VT+ 
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLP 404
            +L AC +   +  G S    A      +L   H  + ++D+ ++ GR     + ++++ 
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVH--LLDNVHVGSALIDMYAKCGRIN-LSQIVFNMM 449

Query: 405 FDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
               +  W +L+ G  +H   +  +  F +     L P+ +S   +LS
Sbjct: 450 PTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLS 497



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 123/261 (47%), Gaps = 34/261 (13%)

Query: 56  DKFSSVHQVFDE-VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           DK   + ++F E   +LNVVS T+II   A+     EA+ LF  M +  ++P+  T  S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P+   +  L  G+  H +A +V L  NV VGSA++D+Y K                   
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAK------------------- 435

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                  CG     R   +  +F  MP +N+V WN+++ G+S  G+ +E +++F  ++R 
Sbjct: 436 -------CG-----RINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483

Query: 235 GLVPNHSTLPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            L P+  +    + A   +     G K F   + ++  K  +   + +++   + G +++
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 294 SL-LVFDKLTERNIVTWNAVI 313
           +  L+ +   E +   W A++
Sbjct: 544 AYDLIKEMPFEPDSCVWGALL 564


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 177/503 (35%), Positives = 279/503 (55%), Gaps = 48/503 (9%)

Query: 24  APNYLIETQKASVQKLETPAIRTDS------VSCGSESDKFSSVHQVFDEVPDLNVVSAT 77
           A  ++ E  K +V+      +R  S      + CGS  D       +FD++   NV +  
Sbjct: 350 AWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDD----AQLIFDKLAVRNVTTWN 405

Query: 78  TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV 137
            +IG  A+Q    EA+ LF +M      P   TF +++ ++   E L   K++H++A   
Sbjct: 406 AMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDA 465

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           GL  ++ VG+A++ +Y K  +   A +VF+D                             
Sbjct: 466 GL-VDLRVGNALVHMYAKCGNTMYAKQVFDD----------------------------- 495

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
             M  RNV +W  MI G +Q G   EA +LF++MLREG+VP+ +T    + A A+  AL 
Sbjct: 496 --MVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALE 553

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
             K  H+ AV      D+ VGN+L+  YAKCGS++D+  VFD + ER++ +W  +I G A
Sbjct: 554 WVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLA 613

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF---SQAKLEDPGM 374
           Q+GRG +A++ F +M++ G +PNG + + +L AC+H GLV++G   F   +Q    +P M
Sbjct: 614 QHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTM 673

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR 434
              EHY CMVDLL R+G+ +EAK F+ ++P +PG   W ALLG C  + N+E+ EFAA+ 
Sbjct: 674 ---EHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKE 730

Query: 435 ILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVT 494
            L L P+  S+YV+LSN  +  G W+    +R  M+ +G+ + PG SWIE+ +++H FV 
Sbjct: 731 RLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVV 790

Query: 495 GDRNHHMNDEIYAVLRSCTEQIR 517
           GD +H  + EIYA L+   ++++
Sbjct: 791 GDTSHPESKEIYAKLKDLIKRLK 813



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 200/404 (49%), Gaps = 44/404 (10%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +IG +A+  + E+A+ ++S+M     +P+E T+ S++ +  +   L  GK++HA   + G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
            QS+V V +A++++Y+K  SI++A  +F+                               
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFD------------------------------- 89

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +M  RNV+SW  MIGG +  GR +EA + F++M REG +PN  T    + A A+  AL  
Sbjct: 90  KMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEW 149

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
            K  H+ AV     LD+ VGN+L+  YAK GS++D+ +VFD + ER+I +W  +I G AQ
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQ 209

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLL--WACNHTGLVEKGYSYFSQAKLEDPGMLK 376
           +GRG+EA   F +M   G  PN  T L +L   A   TG +E        A     G + 
Sbjct: 210 HGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAG--KAGFIS 267

Query: 377 PEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
                  ++ + ++ G   +A+  ++D   D  +  W A++GG   +     G  A    
Sbjct: 268 DLRVGNALIHMYAKCGSIDDAR-LVFDGMCDRDVISWNAMIGGLAQNG---CGHEAFTIF 323

Query: 436 LALDPE----DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L +  E    D ++Y+ L N     G W+ V  + +   E G+ 
Sbjct: 324 LKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLV 367



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/420 (29%), Positives = 206/420 (49%), Gaps = 46/420 (10%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + +L  C S +SL    K+H+    ++I++   S  ++ET  +    V CGS  D     
Sbjct: 34  LSILKACCSPVSLKWGKKIHA----HIIQSGFQSDVRVETALVNM-YVKCGSIDD----A 84

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
             +FD++ + NV+S T +IG  A     +EA + F +M      P+ +T+ S++ ++ + 
Sbjct: 85  QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASA 144

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L   K++H+ A   GL  ++ VG+A++ +Y K  SI++A  VF+     ++ S+T MI
Sbjct: 145 GALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMI 204

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            GL +  R                                +EA +LF++M R G +PN +
Sbjct: 205 GGLAQHGR-------------------------------GQEAFSLFLQMERGGCLPNLT 233

Query: 242 TLPCAIIAAA--NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           T    + A+A  +  AL   K  H  A K     D+ VGN+LI  YAKCGS++D+ LVFD
Sbjct: 234 TYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFD 293

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + +R++++WNA+I G AQNG G EA   F +M+  G  P+  T L LL     TG  E 
Sbjct: 294 GMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEW 353

Query: 360 GYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                  A   + G++      +  V +  R G   +A + ++D      +  W A++GG
Sbjct: 354 VKEVHKHAV--EVGLVSDLRVGSAFVHMYIRCGSIDDA-QLIFDKLAVRNVTTWNAMIGG 410



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 198/429 (46%), Gaps = 43/429 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S        VFD + + ++ S T +IG  A+    +EA  LF +M      P+  T+ 
Sbjct: 177 AKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYL 236

Query: 113 SVIPSS--TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           S++ +S  T+   L   K++H  A K G  S++ VG+A++ +Y K  SI++A  VF+   
Sbjct: 237 SILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDG-- 294

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        M  R+V+SWNAMIGG +Q G   EA  +F++
Sbjct: 295 -----------------------------MCDRDVISWNAMIGGLAQNGCGHEAFTIFLK 325

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M +EG VP+ +T    +    +  A    K  H  AV+     D+ VG++ +  Y +CGS
Sbjct: 326 MQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGS 385

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++D+ L+FDKL  RN+ TWNA+I G AQ   G EA+  F +MR  G  P+  T + +L A
Sbjct: 386 IDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
                 +E      S A   D G++       +V + ++ G    AK+   D+  +  + 
Sbjct: 446 NVGEEALEWVKEVHSYAI--DAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDM-VERNVT 502

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPE----DVSSYVMLSNALSVAGKWDNVSNIR 466
            W  ++ G   H     G  A    L +  E    D ++YV + +A +  G  + V  + 
Sbjct: 503 TWTVMISGLAQHG---CGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVH 559

Query: 467 REMKEKGMT 475
                 G+ 
Sbjct: 560 SHAVNAGLV 568


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/446 (36%), Positives = 260/446 (58%), Gaps = 4/446 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+   + NV S + II    +   ++ A   +S+ML   + P+ FTF SV+ S +    
Sbjct: 101 VFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS---- 156

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK LH  A K+GL S+++V + ++D+Y +   +  A ++F+     ++VS TTM+  
Sbjct: 157 LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTC 216

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K    + A  LF+ M  R+VV WN MIGGY+Q+G   E++ LF  ML    +PN  T+
Sbjct: 217 YSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTV 276

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A   + AL  G+  H+       +++V VG +LI  Y+KCGS+ED+ LVFD++ +
Sbjct: 277 LAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRD 336

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++V WN++I GYA +G  + A++ FE M   G +P  +T +G+L AC H GLVE+G S+
Sbjct: 337 KDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSF 396

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F   + +     K EHY CMV+LL R+G  +EA   + ++        W  LLG C++H 
Sbjct: 397 FRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHV 456

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N++LGE  A+ ++     +  +YV+LSN  +  G W+ V+ +R  MKE G+ +  GCS I
Sbjct: 457 NIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSI 516

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVL 509
           E+ +KVH FV G+R H  + EIY +L
Sbjct: 517 EVDNKVHEFVAGERKHPKSKEIYVML 542



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 143/318 (44%), Gaps = 42/318 (13%)

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
           R + ++ +F      NV S++A+I  + Q+   + A   + +ML  G+ PN  T    + 
Sbjct: 94  RLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLK 153

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK-------- 300
           +     +L  GK  H  A+K     D++V   L+  YA+ G +  +  +FDK        
Sbjct: 154 S----CSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVS 209

Query: 301 -----------------------LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
                                  + ER++V WN +I GYAQ+G   E+++ F RM +   
Sbjct: 210 LTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKA 269

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEA 396
            PN VT+L +L AC   G +E G   +  + +E+ G+    H    ++D+ S+ G  ++A
Sbjct: 270 IPNEVTVLAVLSACGQLGALESG--RWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDA 327

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           +  ++D   D  +  W +++ G  +H  S   L  F         P D+ +++ + +A  
Sbjct: 328 R-LVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDI-TFIGILSACG 385

Query: 455 VAGKWDNVSNIRREMKEK 472
             G  +   +  R M++K
Sbjct: 386 HGGLVEEGRSFFRLMRDK 403



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 109/208 (52%), Gaps = 7/208 (3%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  ++C S+  +      +F+ + + +VV    +IG +A+     E++ LF RML+    
Sbjct: 211 TTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAI 270

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+E T  +V+ +   L  L  G+ +H++    G+Q NV VG+A++D+Y K  S+E+A  V
Sbjct: 271 PNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLV 330

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP---HRNV-VSWNAMIGGYSQTGRN 221
           F+   + +VV++ +MI G       + AL+LF+EM    H+   +++  ++      G  
Sbjct: 331 FDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLV 390

Query: 222 EEAVNLFIEMLRE--GLVPNHSTLPCAI 247
           EE  + F  ++R+  G+ P      C +
Sbjct: 391 EEGRSFF-RLMRDKYGIEPKIEHYGCMV 417



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YA  G ++ S+ VF+   E N+ +++A+I  + Q+   + A  ++ +M   G+ PN  T 
Sbjct: 89  YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148

Query: 345 LGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLY 401
             +L +C+    +E G     QA KL     L  + Y    +VD+ +R G    A++   
Sbjct: 149 SSVLKSCS----LESGKVLHCQAIKLG----LGSDLYVRTGLVDVYARGGDVVCARQLFD 200

Query: 402 DLP 404
            +P
Sbjct: 201 KMP 203


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 254/448 (56%), Gaps = 32/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F+E+P  + VS   +I  +A+   +EEA+  F  M   N+ P+E T  +V+ +     
Sbjct: 219 RLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSG 278

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LG  + +W    GL SN+ + +A++D+Y K                          C
Sbjct: 279 SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSK--------------------------C 312

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G L + R      LF+ +  ++++SWN MIGGYS     +EA+ LF +M +  + PN  T
Sbjct: 313 GDLDKAR-----DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVT 367

Query: 243 LPCAIIAAANIAALGMGKSFHA-CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
               + A A + AL +GK  HA    KFLG  +  +  SLI  YAKCG++E +  VF  +
Sbjct: 368 FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             +++ +WNA+I G A +G    A+E F +MR  G  P+ +T +G+L AC+H GLVE G 
Sbjct: 428 KPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             FS    +     K +HY CM+DLL R+G F EA+  + ++   P    W +LLG C++
Sbjct: 488 QCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRV 547

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVELGEFAA+ +  L+PE+  +YV+LSN  + AG+WD+V+ IR ++ +KGM +VPGCS
Sbjct: 548 HGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCS 607

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            IE+ S VH F+ GD+ H  + +IY +L
Sbjct: 608 SIEVDSVVHEFLVGDKVHEQSQDIYKML 635



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/462 (29%), Positives = 238/462 (51%), Gaps = 22/462 (4%)

Query: 2   IQLLCICRSSLSLNKLSKLHS-LAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           + LL  C+S      L ++HS +    L  TQ A  + +E  AI        S     S 
Sbjct: 36  LTLLSTCKS---FQNLKQIHSQIIKTGLHNTQFALSKLIEFCAI--------SPFGNLSY 84

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
              +F+ +   N     T+I   +       AI  + RMLL  + P+ +TF  ++ S   
Sbjct: 85  ALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAK 144

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           +     GKQ+H    K+GL+S+ FV ++++++Y +   +  A  VF  +   + VS+T +
Sbjct: 145 VGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTAL 204

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G   R   +DA +LF+E+P R+ VSWNAMI GY+Q+GR EEA+  F EM R  + PN 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           ST+   + A A   +L +G    +         ++ + N+LI  Y+KCG ++ +  +F+ 
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + E++I++WN +I GY+     +EA+  F +M+ + + PN VT + +L AC + G ++ G
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384

Query: 361 ---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
              ++Y  +  L   G+     +  ++D+ ++ G  + AK+    +     +G W A++ 
Sbjct: 385 KWIHAYIDKKFL---GLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK-PKSLGSWNAMIS 440

Query: 418 GCQI--HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           G  +  H+N+ L  F   R    +P+D+ ++V + +A S AG
Sbjct: 441 GLAMHGHANMALELFRQMRDEGFEPDDI-TFVGVLSACSHAG 481


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 266/459 (57%), Gaps = 4/459 (0%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTFGSVIPSSTALED 123
           F+++ + ++V+  ++I  F ++ +   A+ +FS+ML  ++  P  FT  SV+ +   LE 
Sbjct: 235 FEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEK 294

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED--THNPNVVSYTTMI 181
           L +GKQ+H+     G   +  V +A++ +Y +   +E A R+ E   T +  +  +T ++
Sbjct: 295 LCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALL 354

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G +K      A  +F  +  R+VV+W AMI GY Q G   EA+NLF  M+  G  PN  
Sbjct: 355 DGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSY 414

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   +  A+++A+L  GK  H  AVK      V V N+LI+ YAK G++  +   FD +
Sbjct: 415 TLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLI 474

Query: 302 -TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
             ER+ V+W ++I   AQ+G  EEA+E FE M + G+RP+ +T +G+  AC H GLV +G
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQG 534

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             YF   K  D  +    HYACMVDL  R+G  +EA+EF+  +P +P +  W +LL  C+
Sbjct: 535 RQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACR 594

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H N++LG+ AA R+L L+PE+  +Y  L+N  S  GKW+  + IR+ MK+  + +  G 
Sbjct: 595 VHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGF 654

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           SWIE+K KVHVF   D  H   +EIY  ++   ++I++ 
Sbjct: 655 SWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKM 693



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 34/333 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+     S  + FD++P  + VS TT+I  +     Y +AI +   M+   I P++
Sbjct: 87  LSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQ 146

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  +V+ S  A   +  GK++H++  K+GL+ NV V +++L++Y K      A  VF+ 
Sbjct: 147 FTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDR 206

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               ++ S+  MI   ++  + + A+  F++M  R++V+WN+MI G++Q G +  A+++F
Sbjct: 207 MVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIF 266

Query: 229 IEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
            +MLR+ L+ P+  TL   + A AN+  L +GK  H+  V     +   V N+LIS Y++
Sbjct: 267 SKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSR 326

Query: 288 CGSME-------------------DSLL--------------VFDKLTERNIVTWNAVIC 314
           CG +E                    +LL              +F  L +R++V W A+I 
Sbjct: 327 CGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIV 386

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           GY Q+G   EAI  F  M   G RPN  TL  +
Sbjct: 387 GYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAM 419



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 65/359 (18%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +H    K GL  +V++ + ++++Y K      A ++F++       S+ T++    KR  
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            +   + F ++P R+ VSW  MI GY   G+  +A+ +  +M++EG+ P   TL   + +
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC--------------------- 288
            A    +  GK  H+  VK   + +V V NSL++ YAKC                     
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215

Query: 289 ----------GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGI 337
                     G M+ ++  F+++ ER+IVTWN++I G+ Q G    A++ F +M R + +
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275

Query: 338 RPNGVTLLGLLWACN-----------HTGLVEKGY-----------SYFSQAK------- 368
            P+  TL  +L AC            H+ +V  G+           S +S+         
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 369 -LEDPGM--LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            +E  G   LK E +  ++D   + G   +AK     L  D  +  W A++ G + H +
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLK-DRDVVAWTAMIVGYEQHGS 393



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 172/398 (43%), Gaps = 79/398 (19%)

Query: 10  SSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESD-KFSSVHQ---VF 65
           S + LN L  ++S      +ET +  +++  T  ++ +  +   +   K   ++Q   +F
Sbjct: 313 SGIVLNALISMYSRCGG--VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIF 370

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
             + D +VV+ T +I  + +   Y EAI LF  M+    RP+ +T  +++  +++L  L+
Sbjct: 371 VSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLS 430

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVVSYTTMICGL 184
            GKQ+H  A K G   +V V +A++ +Y K  +I  A+R F+      + VS+T+MI  L
Sbjct: 431 HGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIAL 490

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
            +    E+AL+LF+                                ML EGL P+H T  
Sbjct: 491 AQHGHAEEALELFE-------------------------------TMLMEGLRPDHITYV 519

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
               A  +   +  G+ +       +  +D  +    +S YA                  
Sbjct: 520 GVFSACTHAGLVNQGRQY----FDMMKDVDKIIPT--LSHYA------------------ 555

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
                  ++  + + G  +EA EF E+M    I P+ VT   LL AC     ++ G    
Sbjct: 556 ------CMVDLFGRAGLLQEAQEFIEKM---PIEPDVVTWGSLLSACRVHKNIDLG---- 602

Query: 365 SQAKLEDPGMLKPEH---YACMVDLLSRSGRFKEAKEF 399
            +   E   +L+PE+   Y+ + +L S  G+++EA + 
Sbjct: 603 -KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKI 639


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 261/459 (56%), Gaps = 31/459 (6%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           SV +VF+ +P  +VVS  T+I  +A+   YE+A+ +   M   +++P  FT  SV+P  +
Sbjct: 158 SVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFS 217

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              D+  GK++H +  + G+ S+V++GS+++D+Y K + IE++ RV              
Sbjct: 218 EYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV-------------- 263

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                            F  +  R+ +SWN+++ GY Q GR  EA+ LF +M+   + P 
Sbjct: 264 -----------------FSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPG 306

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                  I A A++A L +GK  H   ++     ++F+ ++L+  Y+KCG+++ +  +FD
Sbjct: 307 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFD 366

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++   + V+W A+I G+A +G G EA+  FE M+  G++PN V  + +L AC+H GLV++
Sbjct: 367 RMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE 426

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            + YF+          + EHYA + DLL R+G+ +EA +F+  +  +P    W  LL  C
Sbjct: 427 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSC 486

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
            +H N+EL E  A +I  +D E++ +YV++ N  +  G+W  ++ +R  +++KG+ + P 
Sbjct: 487 SVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPA 546

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           CSWIE+K+K H FV+GDR+H   D I   L++  EQ+ +
Sbjct: 547 CSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEK 585



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 168/364 (46%), Gaps = 29/364 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S +     +VF  +   + +S  +++  + +   Y EA+ LF +M+   +RP    F 
Sbjct: 252 AKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFS 311

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SVIP+   L  L+LGKQLH +  + G   N+F+ SA++D+Y K  +I+ A ++F+  +  
Sbjct: 312 SVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLH 371

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLF 228
           + VS+T +I G        +A+ LF+EM  + V    V++ A++   S  G  +EA   F
Sbjct: 372 DEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYF 431

Query: 229 IEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
             M +  GL  N      A +A      LG        A  F+ K+ V    S+ S    
Sbjct: 432 NSMTKVYGL--NQELEHYAAVA----DLLGRAGKLEE-AYDFISKMRVEPTGSVWSTLLS 484

Query: 288 CGSMEDSLLVFDKLTER-------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
             S+  +L + +K+ E+       N+  +  +   YA NGR +E  +   R+R  G+R  
Sbjct: 485 SCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKK 544

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEF 399
                    AC+   +  K + + S  +   P M +  E    +++ + + G   +    
Sbjct: 545 P--------ACSWIEMKNKTHGFVSGDR-SHPSMDRINEFLKAVMEQMEKEGYVADTSGV 595

Query: 400 LYDL 403
           L+D+
Sbjct: 596 LHDV 599



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 138/309 (44%), Gaps = 40/309 (12%)

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           ++I + T ++  +  KQLHA   +    S+    S ++ +Y  L  + EA  VF+   +P
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLVFKTLESP 68

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
            V++                               W ++I  ++       A+  F+EM 
Sbjct: 69  PVLA-------------------------------WKSVIRCFTDQSLFSRALASFVEMR 97

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G  P+H+  P  + +   +  L  G+S H   V+     D++ GN+L++ Y+K   ++
Sbjct: 98  ASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGID 157

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
               VF+ +  +++V++N VI GYAQ+G  E+A+     M  + ++P+  TL  +L   +
Sbjct: 158 SVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFS 217

Query: 353 HTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
               V KG   + Y  +  ++    +     + +VD+ ++S R ++++     L     I
Sbjct: 218 EYVDVLKGKEIHGYVIRKGIDSDVYIG----SSLVDMYAKSARIEDSERVFSHLYRRDSI 273

Query: 410 GFWKALLGG 418
             W +L+ G
Sbjct: 274 S-WNSLVAG 281


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/455 (36%), Positives = 260/455 (57%), Gaps = 11/455 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-----IRPSEFTFGSVIPSS 118
           +F  V D N      +I  +     Y  AI ++ +ML  +     I P +FTF  V+ S 
Sbjct: 68  LFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSC 127

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L   +LGKQ+H    K G +SN  V ++++++Y+K  S+++A +VFE+    + VS+ 
Sbjct: 128 AGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWN 187

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           T+I G ++  +   A  +F+EM  + + SW A++ GY++ G   +A+  F  M   G+ P
Sbjct: 188 TLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEP 247

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  +L   + A A + AL +GK  H  A K     ++ V N+LI  YAKCGS+++   +F
Sbjct: 248 DEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLF 307

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D++ ER++++W+ +I G A +GR  EAIE F+ M+   I PN +T +GLL AC H GL+ 
Sbjct: 308 DQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLN 367

Query: 359 KGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           +G  YF   K +   +PG+   EHY C+V+LL  SGR  +A E +  +P  P    W +L
Sbjct: 368 EGLRYFESMKRDYNIEPGV---EHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSL 424

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C+ HSN+E+   A   +L L+P D  +YV+LSN  +  GKWD VS +R+ M+ K M 
Sbjct: 425 LSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMK 484

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           + PGCS IE+ + V  F +GD +   +  IY VL+
Sbjct: 485 KTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLK 519



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 174/403 (43%), Gaps = 85/403 (21%)

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
           ++  L IR  E  F  ++ +   + +L   K++HA   K  L  + F+ + ++D+    +
Sbjct: 4   KLRALKIREMEDIFVPILKNCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVDVCNHHA 60

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
             E A  +F+   +PN   Y                               NAMI  Y  
Sbjct: 61  ETEYANLLFKRVADPNAFLY-------------------------------NAMIRAYKH 89

Query: 218 TGRNEEAVNLFIEML-----REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
                 A+ ++ +ML        + P+  T P  + + A +    +GK  H    KF  K
Sbjct: 90  NKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQK 149

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN---------------------- 310
            +  V NSL+  Y KC S++D+  VF+++TER+ V+WN                      
Sbjct: 150 SNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEM 209

Query: 311 ---------AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG- 360
                    A++ GYA+ G   +A+EFF RM++ GI P+ ++L+ +L AC   G +E G 
Sbjct: 210 QDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGK 269

Query: 361 YSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           + +F   K    G L+     C  ++++ ++ G   E +  L+D   +  +  W  ++ G
Sbjct: 270 WIHFYADK---AGFLR-NICVCNALIEMYAKCGSIDEGRR-LFDQMNERDVISWSTMIVG 324

Query: 419 C----QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
                + H  +EL  F   +   ++P ++ ++V L +A + AG
Sbjct: 325 LANHGRAHEAIEL--FQEMQKAKIEP-NIITFVGLLSACAHAG 364



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 35/214 (16%)

Query: 56  DKFSSVHQVFDEVP-------------------------------DLNVVSATTIIGRFA 84
           D     H+VF+E+                                D  + S T I+  +A
Sbjct: 166 DSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYA 225

Query: 85  KQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF 144
           +   Y +A+  F RM ++ I P E +  SV+P+   L  L LGK +H +A K G   N+ 
Sbjct: 226 RIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNIC 285

Query: 145 VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR- 203
           V +A++++Y K  SI+E  R+F+  +  +V+S++TMI GL    R  +A++LFQEM    
Sbjct: 286 VCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAK 345

Query: 204 ---NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
              N++++  ++   +  G   E +  F  M R+
Sbjct: 346 IEPNIITFVGLLSACAHAGLLNEGLRYFESMKRD 379


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 254/462 (54%), Gaps = 31/462 (6%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S  F SV +VFDE+ + +VVS  T++   A++  + EA+    +M     RP  FT  +V
Sbjct: 117 STAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTV 176

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P      D+  G ++H +A + G  S+VFVGS+++D+Y   +                 
Sbjct: 177 LPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCT----------------- 219

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                         R + ++K+F  +P R+ + WN+++ G +Q G  EEA+ +F  ML+ 
Sbjct: 220 --------------RTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQA 265

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ P   T    I    N+A+L  GK  HA  +    + +VF+ +SLI  Y KCG +  +
Sbjct: 266 GVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIA 325

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             +FDK++  ++V+W A+I GYA +G   EA+  FERM +   +PN +T L +L AC+H 
Sbjct: 326 HCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHA 385

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           GLV+KG+ YF         +   EH+A + D L R+G   EA  F+  +   P    W  
Sbjct: 386 GLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWST 445

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LL  C++H N  L E  A++I+ L+P  + S+V+LSN  S +G+W+  +++R  M++KGM
Sbjct: 446 LLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGM 505

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            + P CSWIE+KSK+HVFV  DR+H   D I   L + +EQ+
Sbjct: 506 KKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQM 547



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 162/344 (47%), Gaps = 22/344 (6%)

Query: 84  AKQHHYEEAIYLFSRMLLLNIRPSEF--TFGSVIPSSTALEDLNLGKQLHAWATKVGLQS 141
           A + H+ +A+ LF RM       S    +  + + S  AL    LG  LHA A + G  +
Sbjct: 24  AAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFA 83

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           + F  +A+L+LY K+         + D+    +V              FE   K+F EM 
Sbjct: 84  DRFTANALLNLYCKVPC------SYLDSTGVAIVDVPG------SSTAFESVRKVFDEMI 131

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            R+VVSWN ++ G ++ GR+ EA+    +M REG  P+  TL   +   A  A +  G  
Sbjct: 132 ERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLE 191

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            H  A +     DVFVG+SLI  YA C   + S+ VFD L  R+ + WN+++ G AQNG 
Sbjct: 192 VHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGS 251

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPE 378
            EEA+  F RM   G+RP  VT   L+  C +   +  G   ++Y      ED   +   
Sbjct: 252 VEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFIS-- 309

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
             + ++D+  + G    A   ++D    P +  W A++ G  +H
Sbjct: 310 --SSLIDMYCKCGEISIA-HCIFDKMSSPDVVSWTAMIMGYALH 350


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 265/451 (58%), Gaps = 4/451 (0%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N+VS   I+  F +  +++EA+ +F ++  L   P + T  SV+PS    E LN+G+ +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            +  K GL  +  V SA++D+Y K   +     +F              I GL +    +
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 192 DALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
            AL++F+    +    NVVSW ++I G +Q G++ EA+ LF EM   G+ PNH T+P  +
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A  NIAALG G+S H  AV+     +V VG++LI  YAKCG +  S +VF+ +  +N+V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 455

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
            WN+++ G++ +G+ +E +  FE +    ++P+ ++   LL AC   GL ++G+ YF   
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
             E     + EHY+CMV+LL R+G+ +EA + + ++PF+P    W ALL  C++ +NV+L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            E AA ++  L+PE+  +YV+LSN  +  G W  V +IR +M+  G+ + PGCSWI++K+
Sbjct: 576 AEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKN 635

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +V+  + GD++H   D+I   +   ++++R+
Sbjct: 636 RVYTLLAGDKSHPQIDQITEKMDEISKEMRK 666



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/468 (22%), Positives = 219/468 (46%), Gaps = 50/468 (10%)

Query: 30  ETQKASVQKLETPA-----IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFA 84
           +T +A  + L++ A     I    ++  S  + F+    V   +PD  + S +++I    
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92

Query: 85  KQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF 144
           K   + ++I +FSRM    + P      ++      L    +GKQ+H  +   GL  + F
Sbjct: 93  KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 145 VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP--- 201
           V  ++  +Y++   + +A +VF+   + +VV+ + ++C   ++   E+ +++  EM    
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 202 -HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
              N+VSWN ++ G++++G ++EAV +F ++   G  P+  T+   + +  +   L MG+
Sbjct: 213 IEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272

Query: 261 SFHACAVK---------------FLGK----------------LDVFVGNSLISFYAKCG 289
             H   +K                 GK                ++  V N+ I+  ++ G
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332

Query: 290 SMEDSLLVFDKLTER----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            ++ +L +F+   E+    N+V+W ++I G AQNG+  EA+E F  M++ G++PN VT+ 
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLP 404
            +L AC +   +  G S    A      +L   H  + ++D+ ++ GR     + ++++ 
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVH--LLDNVHVGSALIDMYAKCGRIN-LSQIVFNMM 449

Query: 405 FDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
               +  W +L+ G  +H   +  +  F +     L P+ +S   +LS
Sbjct: 450 PTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLS 497



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 123/261 (47%), Gaps = 34/261 (13%)

Query: 56  DKFSSVHQVFDE-VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           DK   + ++F E   +LNVVS T+II   A+     EA+ LF  M +  ++P+  T  S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P+   +  L  G+  H +A +V L  NV VGSA++D+Y K                   
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAK------------------- 435

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                  CG     R   +  +F  MP +N+V WN+++ G+S  G+ +E +++F  ++R 
Sbjct: 436 -------CG-----RINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483

Query: 235 GLVPNHSTLPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            L P+  +    + A   +     G K F   + ++  K  +   + +++   + G +++
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 294 SL-LVFDKLTERNIVTWNAVI 313
           +  L+ +   E +   W A++
Sbjct: 544 AYDLIKEMPFEPDSCVWGALL 564


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 270/455 (59%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD++ D  +VS  ++IG +A   +++EA  LF +M    + P  FTF +++   +   
Sbjct: 144 KLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSR 203

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL+LG+ +H      G++ ++ V +A++D+Y K  ++  A  +F+ T   NVVS+T+MI 
Sbjct: 204 DLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMIS 263

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
              +    E A ++F +MP +NVVSWN+MI  Y + G+  EA++LF +M    +VP+ +T
Sbjct: 264 AYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEAT 323

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A + +  L MGK  H   +   G   V + NSLI  YAKCG +  +L +F ++ 
Sbjct: 324 LVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMP 383

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +N+V+WN +I   A +G G EAI+ FE M+ +G  P+ +TL GLL AC+H+GLV+ G  
Sbjct: 384 GKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLY 443

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF +  +      + EHYACMVDLL R G   EA E +  +P  P +  W ALLG C+IH
Sbjct: 444 YFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIH 503

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            NVE+G+   +++L L+P     YV++SN    A +W++V  IR+ M ++G+ +    S 
Sbjct: 504 GNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISS 563

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           IEI   ++ F+  D+ H ++  IYA+L   T+ +R
Sbjct: 564 IEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHLR 598



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 182/403 (45%), Gaps = 70/403 (17%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ++       ++FD++P  N     ++I  ++      +A+ LF RM+   + P+EFT   
Sbjct: 34  DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 93

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ +            +H  A K+G+ S VFV +A++ +Y+                   
Sbjct: 94  VLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYV------------------- 134

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                  +CGL+   R     KLF ++  + +VSWN+MIGGY+  G  +EA  LF +M  
Sbjct: 135 -------VCGLIHCAR-----KLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMRE 182

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+ P+  T    +   +    L +G+  H C      K+D+ V N+L+  YAKCG++  
Sbjct: 183 WGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHS 242

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGE------------------------------ 323
           +  +FD+  E+N+V+W ++I  YAQ+G  E                              
Sbjct: 243 AQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQY 302

Query: 324 -EAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYSYFSQAKLEDPGMLKPEH 379
            EA++ F +MR + + P+  TL+ +L AC+  G   + +K ++Y     L + G      
Sbjct: 303 REALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYI----LSNKGAYGVTL 358

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           Y  ++D+ ++ G    A +   ++P    +  W  ++G   +H
Sbjct: 359 YNSLIDMYAKCGPVVTALDIFLEMP-GKNLVSWNVIIGALALH 400



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 135/262 (51%), Gaps = 12/262 (4%)

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           C +      + A ++F ++P  N   +N++I GYS +    +AV LF  M+  GL PN  
Sbjct: 30  CAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEF 89

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           TLP  + A    +A       H  A+K  +G L VFV N+LI+ Y  CG +  +  +FD 
Sbjct: 90  TLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSL-VFVQNALIAVYVVCGLIHCARKLFDD 148

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +T++ +V+WN++I GYA  G  +EA   F +MR  G+ P+G T + LL  C+ +  ++ G
Sbjct: 149 ITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLG 208

Query: 361 -YSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            Y +F    +E  G+ +       +VD+ ++ G    A+  ++D   +  +  W +++  
Sbjct: 209 RYVHFC---IEITGVKIDIIVRNALVDMYAKCGNLHSAQA-IFDRTQEKNVVSWTSMISA 264

Query: 419 CQIHSNVELGEFAARRILALDP 440
              H ++E+    AR+I    P
Sbjct: 265 YAQHGSIEV----ARQIFDQMP 282



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 177/438 (40%), Gaps = 93/438 (21%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  +S  ++        Q+FD++P  NVVS  ++I  + ++  Y EA+ LF++M    + 
Sbjct: 259 TSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV 318

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P E T  S++ + + L DL +GK++H +         V + ++++D+Y K   +  A  +
Sbjct: 319 PDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDI 378

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F +    N+VS+  +I                               G  +  G   EA+
Sbjct: 379 FLEMPGKNLVSWNVII-------------------------------GALALHGCGLEAI 407

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF EM  +G +P+  TL   + A ++   + MG                          
Sbjct: 408 KLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG-------------------------- 441

Query: 286 AKCGSMEDSLLVFDKL-----TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
                    L  FD++       R I  +  ++    + G   EAIE   RM    ++P+
Sbjct: 442 ---------LYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMP---MKPD 489

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP--GMLKPEHYACMVDLLSRSGRFKEAKE 398
            V    LL AC   G VE G     Q    +P  G L    Y  + ++   + R+++ K+
Sbjct: 490 VVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGL----YVLISNIYWEAQRWEDVKK 545

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS--YVM---LSNAL 453
            +  L  D GI   +A+       S++E+       ++      +SS  Y M   L++ L
Sbjct: 546 -IRKLMIDRGIKKGRAI-------SSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHL 597

Query: 454 SVAGKWDNVSNIRREMKE 471
             AG   N+S++  E +E
Sbjct: 598 RSAGYLCNISSVFFEAEE 615



 Score = 42.4 bits (98), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 281 LISFYA--KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           LISF A    G ++ +  +FD++ + N   +N++I GY+ +    +A+  F RM  +G+ 
Sbjct: 26  LISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLS 85

Query: 339 PNGVTLLGLLWAC 351
           PN  TL  +L AC
Sbjct: 86  PNEFTLPFVLKAC 98


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 173/496 (34%), Positives = 272/496 (54%), Gaps = 40/496 (8%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ +L +C     L  L +LH  +  + +++ +     L   A       CG+      S
Sbjct: 310 ILNVLPVCLERSELQSLKELHGYSWRHGLQSNE-----LVANAFIAAYTRCGA----LCS 360

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             +VFD +    V S   ++  +A+     +A+ L+ +M    + P  FT GS++ + + 
Sbjct: 361 SERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSR 420

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           ++ L+ G+++H +A + GL  + F+G ++L LYI                          
Sbjct: 421 MKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYI-------------------------- 454

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
            CG     +   A  LF  M HR++VSWN MI GYSQ G  +EA+NLF +ML +G+ P  
Sbjct: 455 CCG-----KPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE 509

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
             + C   A + ++AL +GK  H  A+K     D+FV +S+I  YAK G +  S  +FD+
Sbjct: 510 IAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDR 569

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           L E+++ +WN +I GY  +GRG+EA+E FE+M   G++P+  T  G+L AC+H GLVE G
Sbjct: 570 LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDG 629

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             YF+Q         K EHY C+VD+L R+GR  +A   + ++P DP    W +LL  C+
Sbjct: 630 LEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCR 689

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH N+ LGE  A ++L L+PE   +YV++SN  + +GKWD+V  +R  MK+ G+ +  GC
Sbjct: 690 IHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGC 749

Query: 481 SWIEIKSKVHVFVTGD 496
           SWIE+  KVH F+ GD
Sbjct: 750 SWIEVGGKVHNFLIGD 765



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 186/379 (49%), Gaps = 54/379 (14%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEF 109
           CGS SD       VFD++   N+     I+  + +   +E+A+ +FS ++ +   +P  F
Sbjct: 47  CGSPSDS----RMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNF 102

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T   VI +   L DL LG+ +H  ATK+ L S+VFVG+A++ +Y K              
Sbjct: 103 TLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGK-------------- 148

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       CGL+     E+A+K+F+ MP RN+VSWN++I G+S+ G  +E+ N F 
Sbjct: 149 ------------CGLV-----EEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFR 191

Query: 230 EML--REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           EML   E  VP+ +TL   +   A    +  G + H  AVK     ++ V NSLI  Y+K
Sbjct: 192 EMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSK 251

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING--IRPNGVTLL 345
           C  + ++ L+FDK  ++NIV+WN++I GYA+           ++M+     ++ +  T+L
Sbjct: 252 CRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTIL 311

Query: 346 GLLWACNHTGLVEK-----GYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEF 399
            +L  C     ++      GYS+         G+   E  A   +   +R G    + E 
Sbjct: 312 NVLPVCLERSELQSLKELHGYSW-------RHGLQSNELVANAFIAAYTRCGALC-SSER 363

Query: 400 LYDLPFDPGIGFWKALLGG 418
           ++DL     +  W ALL G
Sbjct: 364 VFDLMDTKTVSSWNALLCG 382



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 192/396 (48%), Gaps = 47/396 (11%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVI 115
            S    +FD+    N+VS  ++IG +A++       YL  +M   +  ++  EFT  +V+
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
           P      +L   K+LH ++ + GLQSN  V +A +  Y +  ++  + RVF+        
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFD-------- 366

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                                   M  + V SWNA++ GY+Q     +A++L+++M   G
Sbjct: 367 -----------------------LMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG 403

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L P+  T+   ++A + + +L  G+  H  A++    +D F+G SL+S Y  CG    + 
Sbjct: 404 LDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQ 463

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           ++FD +  R++V+WN +I GY+QNG  +EAI  F +M  +GI+P  + ++ +  AC+   
Sbjct: 464 VLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLS 523

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            +  G   + +  +A L +   +     + ++D+ ++ G    ++  ++D   +  +  W
Sbjct: 524 ALRLGKELHCFALKAHLTEDIFVS----SSIIDMYAKGGCIGLSQR-IFDRLREKDVASW 578

Query: 413 KALLGGCQIHSN----VELGEFAARRILALDPEDVS 444
             ++ G  IH      +EL E   R  L L P+D +
Sbjct: 579 NVIIAGYGIHGRGKEALELFEKMLR--LGLKPDDFT 612


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 260/448 (58%), Gaps = 10/448 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FD++P  +++S  T+I  +A+     +A  LF    + ++    FT+ +++ +     
Sbjct: 209 QLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVYAYVQDG 264

Query: 123 DLNLGKQL-HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            L+  +++      K  +  NV +       Y +   ++    +FE+   PN+ S+  MI
Sbjct: 265 MLDEARRVFDEMPQKREMSYNVMIAG-----YAQYKRMDMGRELFEEMPFPNIGSWNIMI 319

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G  +      A  LF  MP R+ VSW A+I GY+Q G  EEA+N+ +EM R+G   N S
Sbjct: 320 SGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRS 379

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T  CA+ A A+IAAL +GK  H   V+   +    VGN+L+  Y KCG ++++  VF  +
Sbjct: 380 TFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGV 439

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             ++IV+WN ++ GYA++G G +A+  FE M   G++P+ +T++G+L AC+HTGL ++G 
Sbjct: 440 QHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGT 499

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            YF     +       +HYACM+DLL R+G  +EA+  + ++PF+P    W ALLG  +I
Sbjct: 500 EYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRI 559

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N+ELGE AA  +  ++P +   YV+LSN  + +G+W +VS +R +M++ G+ + PG S
Sbjct: 560 HGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYS 619

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           W+E+++K+H F  GD  H     IYA L
Sbjct: 620 WVEVQNKIHTFTVGDCFHPEKGRIYAFL 647



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 159/329 (48%), Gaps = 25/329 (7%)

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           +A++  Y++ +    A  +F+   + ++ S+  M+ G  +  R  DA  LF  MP ++VV
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVV 127

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           SWNAM+ GY ++G  +EA ++F  M      P+ +++    + AA + +  + ++     
Sbjct: 128 SWNAMLSGYVRSGHVDEARDVFDRM------PHKNSISWNGLLAAYVRSGRLEEARRLFE 181

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
            K     ++   N L+  Y K   + D+  +FD++  R++++WN +I GYAQ+G   +A 
Sbjct: 182 SK--SDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQAR 239

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386
             FE   +  +     T   +++A    G++++    F +   +     +   Y  M+  
Sbjct: 240 RLFEESPVRDV----FTWTAMVYAYVQDGMLDEARRVFDEMPQK-----REMSYNVMIAG 290

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG-CQIHSNVELGEFAARRILALDPE-DVS 444
            ++  R    +E   ++PF P IG W  ++ G CQ   N +L +  AR +  + P+ D  
Sbjct: 291 YAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQ---NGDLAQ--ARNLFDMMPQRDSV 344

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           S+  +    +  G ++   N+  EMK  G
Sbjct: 345 SWAAIIAGYAQNGLYEEAMNMLVEMKRDG 373



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 146/338 (43%), Gaps = 41/338 (12%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           KFS    +FD++P  ++ S   ++  +A+     +A  LF  M   ++          + 
Sbjct: 79  KFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVR 138

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           S    E  ++  ++           N    + +L  Y++   +EEA R+FE   +  ++S
Sbjct: 139 SGHVDEARDVFDRMP--------HKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELIS 190

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE------ 230
              ++ G +KR    DA +LF ++P R+++SWN MI GY+Q G   +A  LF E      
Sbjct: 191 CNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV 250

Query: 231 --------------MLREGL-----VPNHSTLPCAIIAA--ANIAALGMGKS-FHACAVK 268
                         ML E       +P    +   ++ A  A    + MG+  F      
Sbjct: 251 FTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFP 310

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
            +G  ++     +IS Y + G +  +  +FD + +R+ V+W A+I GYAQNG  EEA+  
Sbjct: 311 NIGSWNI-----MISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNM 365

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
              M+ +G   N  T    L AC     +E G     Q
Sbjct: 366 LVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQ 403



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S   ++   +    +FD +P  + VS   II  +A+   YEEA+ +   M       + 
Sbjct: 319 ISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNR 378

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF   + +   +  L LGKQ+H    + G +    VG+A++ +Y K   I+EA  VF+ 
Sbjct: 379 STFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQG 438

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEA 224
             + ++VS+ TM+ G  +      AL +F+ M    V    ++   ++   S TG  +  
Sbjct: 439 VQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRG 498

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
              F  M ++ G+ PN     C I
Sbjct: 499 TEYFHSMNKDYGITPNSKHYACMI 522



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 130/308 (42%), Gaps = 57/308 (18%)

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           FED   P+ V  T  I   ++    + AL +F  MP RN VS+NAMI GY +  +   A 
Sbjct: 28  FED---PHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLAR 84

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           +LF +M  +                                       D+F  N +++ Y
Sbjct: 85  DLFDKMPHK---------------------------------------DLFSWNLMLTGY 105

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           A+   + D+ ++FD + E+++V+WNA++ GY ++G  +EA + F+RM       N ++  
Sbjct: 106 ARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM----PHKNSISWN 161

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
           GLL A   +G +E+    F      D  ++      C++    +     +A++    +P 
Sbjct: 162 GLLAAYVRSGRLEEARRLFESK--SDWELISCN---CLMGGYVKRNMLGDARQLFDQIPV 216

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSN 464
              I  W  ++ G     ++      ARR+    P  DV ++  +  A    G  D    
Sbjct: 217 RDLIS-WNTMISGYAQDGDLS----QARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARR 271

Query: 465 IRREMKEK 472
           +  EM +K
Sbjct: 272 VFDEMPQK 279



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 16/226 (7%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP--SS 118
            + VF  V   ++VS  T++  +A+     +A+ +F  M+   ++P E T   V+   S 
Sbjct: 432 AYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSH 491

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSY 177
           T L D    +  H+     G+  N    + ++DL  +   +EEA  +  +    P+  ++
Sbjct: 492 TGLTDRGT-EYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATW 550

Query: 178 TTMICGLL---KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
             ++         E  E A ++  +M   N   +  +   Y+ +GR  +   + ++M + 
Sbjct: 551 GALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQI 610

Query: 235 GL--VPNHSTLPCAIIAAANIAALGMGKSFHACAVK---FLGKLDV 275
           G+   P +S +         I    +G  FH    +   FL +LD+
Sbjct: 611 GVQKTPGYSWVE----VQNKIHTFTVGDCFHPEKGRIYAFLEELDL 652


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 169/476 (35%), Positives = 262/476 (55%), Gaps = 33/476 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +R   +S  S    F    +VFD   D +VVS T +I  F +     EA+  F  M    
Sbjct: 140 VRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSG 199

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEA 162
           +  +E T  SV+ ++   ED+  G+ +H +  + G ++ +VF+GS+++D+Y K       
Sbjct: 200 VAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGK------- 252

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG      ++DA K+F EMP RNVV+W A+I GY Q    E
Sbjct: 253 -------------------CGC-----YDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFE 288

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           + + +F EML+  + PN  TL   + A A++ AL  G+  H   +K   +++  VG +LI
Sbjct: 289 KGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLI 348

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
            FYAKCG +E+++LVF++L E+N+ TW A+I G+A +G    A++ F  M  + + PN V
Sbjct: 349 DFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEV 408

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T + +L AC H GLVE+G   F   K       K +HYACMVDL  R G  +EAK  +  
Sbjct: 409 TFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIER 468

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P +P    W AL G C IH + ELG++AA R++ L P     Y +L+N  S +  WD+V
Sbjct: 469 MPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDV 528

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHM-NDEIYAVLRSCTEQIR 517
           + +R++MK++ + + PGCSWIE+K K+H F+  D    + +D++Y  L +   Q+R
Sbjct: 529 ARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFDDKKPLESDDLYKTLDNVGVQMR 584



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 130/264 (49%), Gaps = 12/264 (4%)

Query: 184 LLKR----ERFEDALKLFQEMPHRNVVSWNAMIGGYS-QTGRNEEAVNL-FIEMLREGLV 237
           LL+R     +F  A +L  ++   ++  W++++G +S +   N     L + +M R G+V
Sbjct: 42  LLRRCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVV 101

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T P  + A   +      + FHA  +KF    D+FV NSLIS Y+ CG  E    V
Sbjct: 102 PSRHTFPPLLKAVFKLRDANPFQ-FHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRV 160

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD   ++++V+W A+I G+ +N    EA+ +F  M+ +G+  N +T++ +L A      V
Sbjct: 161 FDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDV 220

Query: 358 EKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
             G S        + G ++ + +  + +VD+  + G + +A++   ++P    +  W AL
Sbjct: 221 RFGRSI--HGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMP-SRNVVTWTAL 277

Query: 416 LGGCQIHSNVELGEFAARRILALD 439
           + G       E G F    +L  D
Sbjct: 278 IAGYVQGRCFEKGMFVFEEMLKSD 301


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 169/499 (33%), Positives = 272/499 (54%), Gaps = 39/499 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI---- 115
           +   VFD +P+ NVV  + +I  ++ +   E A  L  +M    + P+  T+  ++    
Sbjct: 70  AARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLN 129

Query: 116 ---------------------PSSTAL----------EDLNLGKQLHAWATKVGLQSNVF 144
                                P +T +          +++++GKQ+H +  K G + +  
Sbjct: 130 RSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDAC 189

Query: 145 VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR- 203
           V +A++D+Y K    +E  RVF ++ + +V S   ++ GL +  +  +AL LF+E   R 
Sbjct: 190 VVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRG 249

Query: 204 ---NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
              NVVSW +++    Q GR+ EAV+LF  M   G+ PN  T+PC + A AN+AAL  G+
Sbjct: 250 VELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGR 309

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
           S H  +++     DV+VG++L+  YAKCG    +  +FD +  RN+V+WNA+I GYA +G
Sbjct: 310 SAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHG 369

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
               A++ F  M+    +P+ VT   +L AC+  GL E+G  YF++ +       + EHY
Sbjct: 370 DAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHY 429

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP 440
           ACMV LL RSG+  EA + + ++PF+P    W +LLG C+++ NV L E AA ++  L+P
Sbjct: 430 ACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEP 489

Query: 441 EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHH 500
            +  +YV+LSN  +    WD V+ +R EMK  G+ +  GCSWIEIK+KVH+ + GD +H 
Sbjct: 490 GNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHP 549

Query: 501 MNDEIYAVLRSCTEQIREF 519
           M   I   L   T ++   
Sbjct: 550 MMTAITEKLNQLTIEMNRL 568



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 173/378 (45%), Gaps = 52/378 (13%)

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148
           +  ++Y F R +  +  P      S + S  A     L + LHA A   GL  + FV S+
Sbjct: 3   HSNSLYHFLRHV--SFPPDPHLLPSALKSCPAQP---LARALHAAAVVSGLAEDPFVASS 57

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRN 204
           +L  YI+L +   A  VF+     NVV ++ +I G   R   E A  L ++M       N
Sbjct: 58  LLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPN 117

Query: 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
           V++WN ++ G +++GR  +AV   + M  EG  P+ + + CA+ A  ++  + +GK  H 
Sbjct: 118 VITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHG 177

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCG-------------------------------SMED 293
             VK   +LD  V  +LI  Y KCG                                + +
Sbjct: 178 YVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSE 237

Query: 294 SLLVFDKL----TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           +LL+F +      E N+V+W +++    QNGR  EA++ F  M+  G+ PN VT+  +L 
Sbjct: 238 ALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLP 297

Query: 350 ACNHTGLVEKGYSY--FSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFD 406
           A  +   +  G S   FS  K    G L   +  + +VD+ ++ G+ + A+     +P  
Sbjct: 298 AFANVAALMHGRSAHCFSLRK----GFLHDVYVGSALVDMYAKCGKARHARTIFDAMP-S 352

Query: 407 PGIGFWKALLGGCQIHSN 424
             +  W A++GG  +H +
Sbjct: 353 RNVVSWNAMIGGYAMHGD 370


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 162/488 (33%), Positives = 265/488 (54%), Gaps = 23/488 (4%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           + + +      +F  +P+ NVVS  T++  +       +A  LF  M + +         
Sbjct: 109 ARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLA 168

Query: 113 SVIPS-----STALEDLNLGKQLHAWATKVG------------------LQSNVFVGSAI 149
           +++ S     +  L D    + + AW T V                    + NV   +A+
Sbjct: 169 ALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAM 228

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           +  Y +   I+EA  +F      ++ S+  MI G ++    E A  LF +MP RNV++W 
Sbjct: 229 ISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWT 288

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
            M+ GY Q+ ++E A+ +F  ML EG+ PN  T   A+ A +N+A L  G+  H    K 
Sbjct: 289 TMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKT 348

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
             + D F+ ++L++ YAKCG +  +  VFD   E+++++WN +I  YA +G G EAI  +
Sbjct: 349 SFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLY 408

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
           E+M+  G +PN VT +GLL AC+H+GLV++G   F     +    ++ EHY C++DL SR
Sbjct: 409 EKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSR 468

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML 449
           +GR  +AK  ++ L  +P    W ALLGGC  H N  +G+ AAR +L  +P +  +Y +L
Sbjct: 469 AGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLL 528

Query: 450 SNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            N  + AGKW   + IR EM ++G+ + PGCSWIE+++KVHVFV+ D++H  +D I ++L
Sbjct: 529 CNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRDKSHSESDLINSLL 588

Query: 510 RSCTEQIR 517
           +   + +R
Sbjct: 589 QDIHDIMR 596



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 200/427 (46%), Gaps = 68/427 (15%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR----------MLLLN--- 103
           + S   ++FD  PD +VVS T ++  +A+Q    +A  LF R            LL+   
Sbjct: 50  RVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNVVTWTALLSGYA 109

Query: 104 ----IRPSEFTFG-----SVIPSSTALEDL-NLGKQLHAWATKVGLQ-SNVFVGSAILDL 152
               +  +E  F      +V+  +T LE   + G+   AW    G+   +    + +L  
Sbjct: 110 RAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAA 169

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
            ++  ++++A ++F+     NV+++TTM+ G+ +    ++A  LF  MP RNVVSWNAMI
Sbjct: 170 LVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMI 229

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
            GY++  R +EA +LF++M            P   IA+ NI                   
Sbjct: 230 SGYARNHRIDEAHDLFMKM------------PTRDIASWNI------------------- 258

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
                   +I+ + +   +E +  +FDK+  RN++TW  ++ GY Q+ + E A++ F  M
Sbjct: 259 --------MITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGM 310

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
            + GIRPN VT LG + AC++   + +G     Q   +          + +++L ++ G 
Sbjct: 311 LVEGIRPNQVTFLGAVDACSNLAGLSEG-QQVHQMICKTSFQFDTFIESTLMNLYAKCGE 369

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHS-NVE-LGEFAARRILALDPEDVSSYVMLS 450
            + A++ ++DL  +  +  W  ++     H   VE +  +   +     P DV +YV L 
Sbjct: 370 IRLARK-VFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDV-TYVGLL 427

Query: 451 NALSVAG 457
           +A S +G
Sbjct: 428 SACSHSG 434


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 261/459 (56%), Gaps = 31/459 (6%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           SV +VF+ +P  +VVS  TII  +A+   YE+A+ +   M   +++P  FT  SV+P  +
Sbjct: 194 SVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFS 253

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              D+  GK++H +  + G+ S+V++GS+++D+Y K + IE++ RV              
Sbjct: 254 EYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV-------------- 299

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                            F  +  R+ +SWN+++ GY Q GR  EA+ LF +M+   + P 
Sbjct: 300 -----------------FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPG 342

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                  I A A++A L +GK  H   ++     ++F+ ++L+  Y+KCG+++ +  +FD
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++   + V+W A+I G+A +G G EA+  FE M+  G++PN V  + +L AC+H GLV++
Sbjct: 403 RMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDE 462

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            + YF+          + EHYA + DLL R+G+ +EA  F+  +  +P    W  LL  C
Sbjct: 463 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSC 522

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
            +H N+EL E  A +I  +D E++ +YV++ N  +  G+W  ++ +R  M++KG+ + P 
Sbjct: 523 SVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPA 582

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           CSWIE+K+K H FV+GDR+H   D+I   L++  EQ+ +
Sbjct: 583 CSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEK 621



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 197/414 (47%), Gaps = 32/414 (7%)

Query: 33  KASVQKLETPAIRTDSVSCGSESDKFS---------SVHQVFDEVPDLNVVSATTIIGRF 83
           K+  ++L    IRT S+S  S S   S             +F  +    V++  ++I  F
Sbjct: 21  KSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCF 80

Query: 84  AKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNV 143
             Q  + +A+  F  M      P    F SV+ S T + DL  G+ +H +  ++G+  ++
Sbjct: 81  TDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDL 140

Query: 144 FVGSAILDLYIKL----------SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
           + G+A++++Y KL          +  +E  +   ++ + +V + T ++   +   R    
Sbjct: 141 YTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVR---- 196

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
            ++F+ MP ++VVS+N +I GY+Q+G  E+A+ +  EM    L P+  TL   +   +  
Sbjct: 197 -RVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
             +  GK  H   ++     DV++G+SL+  YAK   +EDS  VF +L  R+ ++WN+++
Sbjct: 256 VDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLE 370
            GY QNGR  EA+  F +M    ++P  V    ++ AC H   +  G   + Y  +    
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
               +     + +VD+ S+ G  K A++    +     +  W A++ G  +H +
Sbjct: 376 SNIFIA----SALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHALHGH 424



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 169/364 (46%), Gaps = 29/364 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S +     +VF  +   + +S  +++  + +   Y EA+ LF +M+   ++P    F 
Sbjct: 288 AKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFS 347

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SVIP+   L  L+LGKQLH +  + G  SN+F+ SA++D+Y K  +I+ A ++F+  +  
Sbjct: 348 SVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL 407

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLF 228
           + VS+T +I G        +A+ LF+EM  + V    V++ A++   S  G  +EA   F
Sbjct: 408 DEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYF 467

Query: 229 IEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
             M +  GL  N      A +A      LG        A  F+ K+ V    S+ S    
Sbjct: 468 NSMTKVYGL--NQELEHYAAVA----DLLGRAGKLEE-AYNFISKMCVEPTGSVWSTLLS 520

Query: 288 CGSMEDSLLVFDKLTER-------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
             S+  +L + +K+ E+       N+  +  +   YA NGR +E  +   RMR  G+R  
Sbjct: 521 SCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKK 580

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEF 399
                    AC+   +  K + + S  +   P M K  E    +++ + + G   +    
Sbjct: 581 P--------ACSWIEMKNKTHGFVSGDR-SHPSMDKINEFLKAVMEQMEKEGYVADTSGV 631

Query: 400 LYDL 403
           L+D+
Sbjct: 632 LHDV 635


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 170/461 (36%), Positives = 257/461 (55%), Gaps = 33/461 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S   +FDE+P  +VVS   +I  + +  +Y+EA+ LF  M+  N+RP E T  +VI +S 
Sbjct: 147 SARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASA 206

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               + LG+Q+H+W    G  SN+ + +A++D Y K   +E A                 
Sbjct: 207 RSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETA----------------- 249

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CGL            F  + +++V+SWN +IGGY+     +EA+ LF EMLR G  PN
Sbjct: 250 --CGL------------FLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPN 295

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLV 297
             T+   + A A++ A+ +G+  H    K L  +     +  SLI  Y+KCG +E +  V
Sbjct: 296 DVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQV 355

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +  +++  WNA+I G+A +GR   A + F RMR N I+P+ +T +GLL AC+H G++
Sbjct: 356 FNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGML 415

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + G   F           K EHY CM+DLL  SG FKEA+E +  +  +P    W +LL 
Sbjct: 416 DLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLK 475

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H NVELGE  A+ +  ++P +  SYV+LSN  + AG+W+ V+ IR  + +KGM +V
Sbjct: 476 ACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKV 535

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           PGCS IEI S VH F+ GD+ H  N EIY +L      ++E
Sbjct: 536 PGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQE 576



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 220/409 (53%), Gaps = 5/409 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ + + N++   T+    A       A+ L+  M+ L + P+ +TF  ++ S   L+ 
Sbjct: 19  VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKA 78

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G Q+H    K+G + +++V ++++ +Y++   +E+A +VF+ + + +VVSYT ++ G
Sbjct: 79  SKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTG 138

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R   E A  +F E+P ++VVSWNAMI GY +TG  +EA+ LF EM++  + P+ ST+
Sbjct: 139 YASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I A+A   ++ +G+  H+         ++ + N+LI FY+KCG ME +  +F  L+ 
Sbjct: 199 VTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSY 258

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H G ++ G   
Sbjct: 259 KDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWI 318

Query: 364 FSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                    G+         ++D+ S+ G  + A + +++      +  W A++ G  +H
Sbjct: 319 HVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQ-VFNSMLHKSLPAWNAMIFGFAMH 377

Query: 423 --SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             +N     F+  R   + P+D+ ++V L +A S AG  D   +I R M
Sbjct: 378 GRANAAFDIFSRMRKNEIKPDDI-TFVGLLSACSHAGMLDLGRHIFRSM 425



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 39/260 (15%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+ +   N++ WN M  G++ +     A+ L++ M+  GL+PN  T P  + + A 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------- 304
           + A   G   H   +K   +LD++V  SLIS Y +   +ED+  VFD+ + R        
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 305 -----------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                  ++V+WNA+I GY + G  +EA+E F+ M    +RP+ 
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM---LKPEHYACMVDLLSRSGRFKEAKE 398
            T++ ++ A   +G +E G    S   + D G    LK  +   ++D  S+ G  + A  
Sbjct: 196 STMVTVISASARSGSIELGRQVHSW--IADHGFGSNLKIVN--ALIDFYSKCGEMETACG 251

Query: 399 FLYDLPFDPGIGFWKALLGG 418
               L +   I  W  L+GG
Sbjct: 252 LFLGLSYKDVIS-WNILIGG 270


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 165/495 (33%), Positives = 272/495 (54%), Gaps = 23/495 (4%)

Query: 44  IRTDSVSCGSESDKF---------------SSVHQVFDEVPDLNVVSATTIIGRFAKQHH 88
           +  D++ CG  SD F                   +VFD++   +VVS T++   +     
Sbjct: 154 VHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGL 213

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148
               + +F  M    ++P+  T  S++P+ + L+DL  G+ +H +A + G+  NVFV SA
Sbjct: 214 PRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSA 273

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV--- 205
           ++ LY +  S+++A  VF+   + +VVS+  ++        ++  L LF +M  + V   
Sbjct: 274 LVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEAD 333

Query: 206 -VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
             +WNA+IGG  + G+ E+AV +  +M   G  PN  T+   + A + + +L MGK  H 
Sbjct: 334 EATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHC 393

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
              +     D+    +L+  YAKCG +  S  VFD +  +++V WN +I   A +G G E
Sbjct: 394 YVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGRE 453

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYAC 382
            +  FE M  +GI+PN VT  G+L  C+H+ LVE+G   F+    +   +++P+  HYAC
Sbjct: 454 VLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDH--LVEPDANHYAC 511

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED 442
           MVD+ SR+GR  EA EF+  +P +P    W ALLG C+++ NVEL + +A ++  ++P +
Sbjct: 512 MVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEPNN 571

Query: 443 VSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMN 502
             +YV L N L  A  W   S  R  MKE+G+T+ PGCSW+++  +VH FV GD+N+  +
Sbjct: 572 PGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMES 631

Query: 503 DEIYAVLRSCTEQIR 517
           D+IY  L    E+++
Sbjct: 632 DKIYNFLDELGEKMK 646



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 147/322 (45%), Gaps = 34/322 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F    Q+FD +P  +  + +T+I  F  +    EAI L++ +    I+P    F +V  +
Sbjct: 82  FRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKA 141

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             A  D +  K++H  A + G+ S+ F+G+A++  Y K   +E A RVF+D    +VV  
Sbjct: 142 CGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV-- 199

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                                        SW +M   Y   G     + +F EM   G+ 
Sbjct: 200 -----------------------------SWTSMSSCYVNCGLPRLGLAVFCEMGWNGVK 230

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  TL   + A + +  L  G++ H  AV+     +VFV ++L+S YA+C S++ + LV
Sbjct: 231 PNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLV 290

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD +  R++V+WN V+  Y  N   ++ +  F +M   G+  +  T   ++  C   G  
Sbjct: 291 FDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQT 350

Query: 358 EKGYSYFSQAKLEDPGMLKPEH 379
           EK        K+++ G  KP  
Sbjct: 351 EKAVEMLR--KMQNLG-FKPNQ 369



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 6/229 (2%)

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
           F  A +LF  +P  +  + + +I  ++  G   EA+ L+  +   G+ P++S       A
Sbjct: 82  FRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKA 141

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
                     K  H  A++     D F+GN+LI  Y KC  +E +  VFD L  +++V+W
Sbjct: 142 CGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSW 201

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
            ++   Y   G     +  F  M  NG++PN VTL  +L AC+    ++ G +    A  
Sbjct: 202 TSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVR 261

Query: 370 EDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
              GM++   + C  +V L +R    K+A+  ++DL     +  W  +L
Sbjct: 262 H--GMIE-NVFVCSALVSLYARCLSVKQAR-LVFDLMPHRDVVSWNGVL 306


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  314 bits (804), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 264/485 (54%), Gaps = 24/485 (4%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +      +FD +P+ NVVS  T++  +A       A  LF  M + +         +++ 
Sbjct: 117 RVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVR 176

Query: 117 SSTALEDLNL-----GKQLHAWATKV-GL-----------------QSNVFVGSAILDLY 153
           S T  E   L      + + +W T + GL                 + NV   +A++  Y
Sbjct: 177 SGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAMISGY 236

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
            +   I+EA  +F +    +V S+  MI G ++ +  + A +LF EMP RNVVSW  M+ 
Sbjct: 237 ARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMN 296

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           G  Q   +E A+ +F  ML +G+ PN  T   A+ A +N+A L  G+  H    K   + 
Sbjct: 297 GCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQF 356

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           D F+ +SL+  YAKCG +  +  VFD   E+++++WN +I  YA +G G EAI  +E+M+
Sbjct: 357 DNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQ 416

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
            N  +PN VT +GLL AC+H+GLV++G   F     +    ++ EHY+C++DL SR+GR 
Sbjct: 417 ENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRL 476

Query: 394 KEAKEFLYDLPFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
            +AK  +  L   P     W ALLGGC  H N  +G+ AAR +L  +P++  +Y +LSN 
Sbjct: 477 DDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTYTLLSNI 536

Query: 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
            + AGKW   + IR EM ++G+ + PGCSWIE+ +KVHVFV  D++H  ++ IY++L+  
Sbjct: 537 YASAGKWKEAAKIRSEMNDRGLKKQPGCSWIELANKVHVFVARDKSHSESELIYSLLQDI 596

Query: 513 TEQIR 517
              +R
Sbjct: 597 HHMMR 601



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 194/427 (45%), Gaps = 68/427 (15%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR------MLLLNIRPSEFT 110
           +     ++FD  PD +VVS T ++  +A+Q    EA  L  R      ++      S + 
Sbjct: 54  RVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRPDARRNVVTWTALLSGYA 113

Query: 111 FGSVIPSSTALEDLNLGKQLHAWAT---------KVGLQSNVFVGSAILD---------L 152
               +  + AL D    + + +W T         ++G    +F G  + D          
Sbjct: 114 RARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAA 173

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
            ++  +++EA R+FE     NV+S+TTMI GL +    ++A  LF  MP RNVVSWNAMI
Sbjct: 174 LVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAMI 233

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
            GY++  R +EA++LF+ M            P   +A+ NI                   
Sbjct: 234 SGYARNLRIDEALDLFMNM------------PERDVASWNI------------------- 262

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
                   +I+ + +   ++ +  +FD++ +RN+V+W  ++ G  Q    E A++ F  M
Sbjct: 263 --------MITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGM 314

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
            ++GIRPN VT LG + A ++   + +G     Q   + P        + ++ L ++ G 
Sbjct: 315 LVDGIRPNQVTFLGAVDAGSNLAGLSEG-QQVHQMICKTPFQFDNFIESSLMKLYAKCGE 373

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIH-SNVE-LGEFAARRILALDPEDVSSYVMLS 450
            + A++ ++DL  +  +  W  ++     H + VE +  +   +     P DV +YV L 
Sbjct: 374 IRLARK-VFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDV-TYVGLL 431

Query: 451 NALSVAG 457
           +A S +G
Sbjct: 432 SACSHSG 438



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 28/241 (11%)

Query: 96  FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
           FS +   N R +E      +P +  L D    + + +W             +A++  Y +
Sbjct: 36  FSHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSW-------------TAMVAAYAR 82

Query: 156 LSSIEEATRVFEDTHNP----NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
              + EA+ +    H P    NVV++T ++ G  +  R ++A  LF  MP RNVVSWN M
Sbjct: 83  QGQLHEASALL---HRPDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTM 139

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           +  Y+  GR   A  LF  M      P        I+ AA + +  M ++      + + 
Sbjct: 140 LEAYASAGRMGAACALFDGM------PVRDAGSWNILLAALVRSGTMDEARR--LFERMP 191

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           + +V    ++IS  A+ GS +++  +FD + ERN+V+WNA+I GYA+N R +EA++ F  
Sbjct: 192 ERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMN 251

Query: 332 M 332
           M
Sbjct: 252 M 252



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 97/185 (52%), Gaps = 4/185 (2%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ++       ++FDE+P  NVVS TT++    + +  E A+ +F+ ML+  IRP++ TF  
Sbjct: 269 QNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLG 328

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + + + L  L+ G+Q+H    K   Q + F+ S+++ LY K   I  A +VF+ +   +
Sbjct: 329 AVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKD 388

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFI 229
           V+S+  MI          +A+ L+++M       N V++  ++   S +G  +E + +F 
Sbjct: 389 VISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFE 448

Query: 230 EMLRE 234
            M ++
Sbjct: 449 YMAKD 453



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 105/261 (40%), Gaps = 61/261 (23%)

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           +T  F    +PN       I  L    R  DA +LF   P R+VVSW AM+  Y++ G+ 
Sbjct: 32  STDAFSHVQDPN-----RRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQL 86

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
            EA  L          P+                                + +V    +L
Sbjct: 87  HEASALLHR-------PD-------------------------------ARRNVVTWTAL 108

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           +S YA+   ++++  +FD++ ERN+V+WN ++  YA  GR   A   F+ M +       
Sbjct: 109 LSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWN 168

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH----YACMVDLLSRSGRFKEAK 397
           + L  L+     +G +++    F +          PE     +  M+  L+RSG   EA+
Sbjct: 169 ILLAALV----RSGTMDEARRLFERM---------PERNVMSWTTMISGLARSGSADEAR 215

Query: 398 EFLYDLPFDPGIGFWKALLGG 418
                +P +  +  W A++ G
Sbjct: 216 ALFDGMP-ERNVVSWNAMISG 235


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  313 bits (803), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 268/463 (57%), Gaps = 1/463 (0%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     ++FD++P+ +VVS  T++  +AK     +A+  +  +  L I  +E++F  ++ 
Sbjct: 132 KIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLN 191

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
               +++L L KQ H      G  SN+ + S++LD Y K S + +A R+F++    +V++
Sbjct: 192 ICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLA 251

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +TTM+ G  +    E A +LF  MP +N V+W ++I GY++     +A+ LF +M+   +
Sbjct: 252 WTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNI 311

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            P+  T    + A+A+IA+L  GK  H   ++   + +  V +SLI  Y+KCG +E   L
Sbjct: 312 RPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRL 371

Query: 297 VFDKLTER-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           VFD + ++ ++V WN +I   AQ+GRG+EAI+ F+ M   G++P+ +TL+ LL AC+H+G
Sbjct: 372 VFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSG 431

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           LV++G   +         +   EHYAC++DLL R+G F      L  +P  P    W AL
Sbjct: 432 LVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNAL 491

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           LG C++H N+E G   A +I+ LDP+  ++YV+LS+  +  G+W+ V N+R+ M E+ + 
Sbjct: 492 LGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVR 551

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +    SWIEI++KVH F   DR H + + IY  L+     + E
Sbjct: 552 KDRAISWIEIENKVHSFTASDRLHPLKEVIYLALKQLAGHMEE 594



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 171/392 (43%), Gaps = 44/392 (11%)

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ-SNVFVGSAILDLYIKLSSIEEA 162
           IR    T   ++      + L LGK +H      GL+  N F+ + ++++Y K      A
Sbjct: 46  IRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSA 105

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            +VF++    N+ S+  M+ G  K  + + A KLF +MP ++VVSWN M+  Y+++G   
Sbjct: 106 YKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCN 165

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA--CAVKFLGKL------- 273
           +A+  + E+ R G+  N  +    +     +  L + K  H       FL  L       
Sbjct: 166 DALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVL 225

Query: 274 ----------------------DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
                                 DV    +++S YA+ G +E +  +FD + E+N V W +
Sbjct: 226 DAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTS 285

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAK 368
           +I GYA++  G +A+E F +M    IRP+  T    L A      +  G   + Y  +  
Sbjct: 286 LIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTN 345

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALLGGCQIHSNVE- 426
           +    ++     + ++D+ S+ G   E    ++DL  D   +  W  ++     H   + 
Sbjct: 346 IRPNTIV----VSSLIDMYSKCGCL-EVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQE 400

Query: 427 -LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            +  F     L + P+ ++  V+L NA S +G
Sbjct: 401 AIQMFDDMVRLGMKPDRITLIVLL-NACSHSG 431



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 115/210 (54%), Gaps = 10/210 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  ++     +  ++FD +P+ N V+ T++I  +A+     +A+ LF++M+ LNIR
Sbjct: 253 TTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIR 312

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P +FTF S + +S ++  LN GKQ+H +  +  ++ N  V S+++D+Y K   +E    V
Sbjct: 313 PDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLV 372

Query: 166 FEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEM------PHRNVVSWNAMIGGYSQT 218
           F+   +  +VV + T+I  L +  R ++A+++F +M      P R  ++   ++   S +
Sbjct: 373 FDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDR--ITLIVLLNACSHS 430

Query: 219 GRNEEAVNLFIEMLR-EGLVPNHSTLPCAI 247
           G  +E + L+  +    G++PN     C I
Sbjct: 431 GLVQEGLRLYESITSCHGVIPNQEHYACLI 460


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/488 (33%), Positives = 267/488 (54%), Gaps = 23/488 (4%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-----LNIRPS 107
           + + +      +F  +P+ NVVS  T++  +       +A  LF+ M +      NI  +
Sbjct: 109 ARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLA 168

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVG------------------LQSNVFVGSAI 149
                  I  +  L D    + + AW T V                    + NV   +A+
Sbjct: 169 ALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAM 228

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           +  Y +   I+EA  +F      ++ S+  MI G ++ +  E A +LF +MP RNVV+W 
Sbjct: 229 ISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWT 288

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
            M+ GY Q+ ++E A+ LF  ML +G+ PN  T   A+ A +N+A L  G+  H    K 
Sbjct: 289 TMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKT 348

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
             + D F+ ++L++ YAKCG +  +  VF+   E+++++WN +I  YA +G G EAI  +
Sbjct: 349 PFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLY 408

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
           E+M+ NG +PN VT +GLL AC+H+GLV++G   F     +    ++ EHY C++DL SR
Sbjct: 409 EKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSR 468

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML 449
           +GR  +AK  ++ L  +P    W ALLGGC  H N  +G+ AAR +L  +P +  +Y +L
Sbjct: 469 AGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLL 528

Query: 450 SNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            N  + AGKW   + IR EM ++G+ + PGCSWIE+ +KVHVFV+ D++H  +D I ++L
Sbjct: 529 CNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLINSLL 588

Query: 510 RSCTEQIR 517
           +   + +R
Sbjct: 589 QDIHDIMR 596



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 178/390 (45%), Gaps = 65/390 (16%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR------MLLLNIRPSEFT 110
           + S   ++FD  PD +VVS T ++  +A Q    +A  LF R      ++      S + 
Sbjct: 50  RVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRPDARRNVVTWTALLSGYA 109

Query: 111 FGSVIPSSTALEDLNLGKQLHAWAT---------KVGLQSNVFVGSAILD---------L 152
               +  + AL      + + +W T         +VG    +F G  + D          
Sbjct: 110 RAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAA 169

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
            ++  +I++A ++F+     NV+++TTM+ G+ +     +A  LF  MP RNVVSWNAMI
Sbjct: 170 LVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMI 229

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
            GY++    +EA +LF++M            P   IA+ NI                   
Sbjct: 230 SGYARNHMIDEAHDLFMKM------------PTRDIASWNI------------------- 258

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
                   +I+ + +  ++E +  +FDK+  RN+VTW  ++ GY Q+ + E A++ F  M
Sbjct: 259 --------MITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGM 310

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
            I+GIRPN VT LG + AC++   + +G     Q   + P        + +++L ++ G 
Sbjct: 311 LIDGIRPNQVTFLGAVDACSNLAGLSEG-QQVHQMICKTPFQFDTFIESTLMNLYAKCGE 369

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              A++ +++L  +  +  W  ++     H
Sbjct: 370 IILARK-VFNLSKEKDVISWNGMIAAYAHH 398


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 277/519 (53%), Gaps = 19/519 (3%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +L +    + LN L +L +    +LI    A         +R     C       S    
Sbjct: 58  VLALLERCIHLNHLKQLQA----FLITLGHAQTHFYAFKLLRF----CTLALSNLSYARF 109

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALE 122
           +FD V   NV   T +I  +A    +  A+ L+  M+      P+ F +  V+ S T + 
Sbjct: 110 IFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVV 169

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL-SSIEEATRVFEDTHNPNVVSYTTMI 181
                + +H    + G +    V +A+LD Y++  S +E A  +F++    NVVS+T MI
Sbjct: 170 GPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMI 229

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-------E 234
            G  +  +  +A+ LF+EMP R+V SWNA+I GY+Q G   EA++LF  M+        +
Sbjct: 230 SGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQ 289

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G  PN  T  C++ A  +   L +GK  H    +    LD FV N+L+  Y KCG ++++
Sbjct: 290 GNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEA 349

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI--NGIRPNGVTLLGLLWACN 352
             VFD+  ER++ +WN++I   A +G+ + AI  FE M    +G++P+ VT +GLL AC 
Sbjct: 350 RRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACT 409

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H GLVEKG+ YF           + EHY C+VDLL R+G+F+EA E +  +  +P    W
Sbjct: 410 HGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIW 469

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LL GC+IH + +L EF+ ++++ +DP +    +ML+N     GKWD V  +R+ +KE+
Sbjct: 470 GSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQ 529

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
              + PGCSWIEI ++VH F + D+ H   +EIY  L S
Sbjct: 530 NAHKTPGCSWIEIDNQVHQFYSVDKTHPRTEEIYNTLES 568


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 268/459 (58%), Gaps = 3/459 (0%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQ-HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
           H+V    P   +     +I  ++    H  +   L+S+MLL +  P++ TF  +  + T+
Sbjct: 36  HKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTS 95

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L   +LG+ LH    K G + ++F  +A+LD+Y K+ ++E A ++F+      V ++  M
Sbjct: 96  LSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAM 155

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPN 239
           + G  +    + AL+LF+ MP RNVVSW  MI GYS++ +  EA+ LF+ M +E G++PN
Sbjct: 156 MAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPN 215

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             TL     A AN+ AL +G+   A A K     +++V N+++  YAKCG ++ +  VF+
Sbjct: 216 AVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFN 275

Query: 300 KL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           ++ + RN+ +WN++I G A +G   + ++ +++M   G  P+ VT +GLL AC H G+VE
Sbjct: 276 EIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVE 335

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           KG   F         + K EHY CMVDLL R+G+ +EA E +  +P  P    W ALLG 
Sbjct: 336 KGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGA 395

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C  H NVEL E AA  + AL+P +  +YV+LSN  + AG+WD V+ +R+ MK   +T+  
Sbjct: 396 CSFHDNVELAEIAAESLFALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSA 455

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           G S+IE   ++H F+  DR+H  ++EI+A+L    E I+
Sbjct: 456 GHSFIEEGGQLHKFIVEDRSHPESNEIFALLDGVYEMIK 494


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 258/457 (56%), Gaps = 31/457 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F+E+P  +V+S T++IG        EEA+++F +ML   + P+  TF  V+ +     
Sbjct: 157 RLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAV 216

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           + NLG Q+H    K+G   + F+  +++  Y     IE A                    
Sbjct: 217 EFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAH------------------- 257

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                       K+F E   +NVV W A++  Y    ++++A+ +F +M + G +PN ST
Sbjct: 258 ------------KIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQST 305

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A   + AL  GK  H  A+K   + DVFVGNSL+  Y +CG++  ++ VF  + 
Sbjct: 306 FSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN 365

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E++IV+WN++I G AQ+G G  A+ FF +M   G+ PN +T  GLL AC+ +G++ KG  
Sbjct: 366 EKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRC 425

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F         +L+P+HYACMVD+L R G+  EA+E +  +P       W ALL  C++H
Sbjct: 426 FFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVH 485

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
           SN+E+ E AA+ IL L+P   S+YV+LSN  + AG+W +VS +R +MK+ G+ + PG SW
Sbjct: 486 SNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSW 545

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           + ++ K H F++ DR+H +++ IY  L    ++++EF
Sbjct: 546 VVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEF 582



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 163/322 (50%), Gaps = 8/322 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T S++   ++ +      +FD++P  N+   T +I  + +     +A+ LF RM + ++ 
Sbjct: 16  TTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDV- 74

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
               ++ S+I       +L +  +L         + NV   + +++ Y+K   +E A R+
Sbjct: 75  ---VSWNSMIKGCLDCGNLGMATRLFDEMP----EKNVISWTTMVNGYLKFGRVELAQRL 127

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F D H  +V ++  M+ G  +  R E+ ++LF+EMP R+V+SW +MIGG    G++EEA+
Sbjct: 128 FLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEAL 187

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            +F +MLR G+ P  ST  C + A AN     +G   H   VK       F+  SLI+FY
Sbjct: 188 FVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFY 247

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           A C  +E +  +F++   +N+V W A++  Y  N + ++A+  F  M   G  PN  T  
Sbjct: 248 ANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFS 307

Query: 346 GLLWACNHTGLVEKGYSYFSQA 367
             L AC     ++KG    + A
Sbjct: 308 ITLKACCGLEALDKGKEIHTMA 329



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 47/232 (20%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K    H++F+E    NVV  T ++  +   + +++A+ +F  M  +   P++ TF   + 
Sbjct: 252 KIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLK 311

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   LE L+ GK++H  A K+GL+++VFVG++++ +Y +  ++  A  VF + +  ++VS
Sbjct: 312 ACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVS 371

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +                               N++I G +Q G    A+  F +M+R G+
Sbjct: 372 W-------------------------------NSIIVGSAQHGFGLWALIFFNQMIRRGV 400

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSF----------------HACAVKFLGK 272
            PN  T    + A +    L  G+ F                +AC V  LG+
Sbjct: 401 DPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGR 452



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 39/208 (18%)

Query: 175 VSYTTMICGLLKRERFE-------------------------------DALKLFQEMPHR 203
           +SYTT +   LK +R +                               DALKLF  M  R
Sbjct: 13  LSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR 72

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           +VVSWN+MI G    G    A  LF EM  + ++ + +T+    +    +      + F 
Sbjct: 73  DVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVI-SWTTMVNGYLKFGRVEL--AQRLFL 129

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
              VK     DV   N+++  Y + G +E+ + +F+++  R++++W ++I G   NG+ E
Sbjct: 130 DMHVK-----DVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSE 184

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWAC 351
           EA+  F++M  +G+ P   T   +L AC
Sbjct: 185 EALFVFKKMLRSGVEPTWSTFACVLSAC 212


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/457 (36%), Positives = 248/457 (54%), Gaps = 31/457 (6%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++  +    + V  TT+I  +      +EA+  F  ++   ++P+  TF S+ P+   L
Sbjct: 315 QKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGL 374

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             LNLGK+LH    K  L     VGSAILD+Y K                          
Sbjct: 375 AALNLGKELHGSIIKTKLDEKCHVGSAILDMYAK-------------------------- 408

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG     R + A ++F  +  ++ + WN+MI   SQ GR  EA+NLF +M  EG   +  
Sbjct: 409 CG-----RLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCV 463

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           ++  A+ A AN+ AL  GK  H   +K   + D++  +SLI  YAKCG++  S  VFD++
Sbjct: 464 SISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRM 523

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ERN V+WN++I  Y  +G  +E +  F  M  NGI+P+ VT LG++ AC H G V++G 
Sbjct: 524 QERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGI 583

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            Y+     E     + EHYAC+ D+  R+GR  EA E +  +PF P  G W  LLG C I
Sbjct: 584 RYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHI 643

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVEL E A++ +  LDP +   YV+L+N  + AGKW  V  +R  MKE+G+ +VPG S
Sbjct: 644 HGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYS 703

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           WIE+ +  H+FV  D +H +  +IY+VL S   ++++
Sbjct: 704 WIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKK 740



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 189/394 (47%), Gaps = 49/394 (12%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +L +C S   L+  ++LH +A +  +E        L++P   T  ++  S+     +  +
Sbjct: 165 VLSVCASEAMLDLGTQLHGIAVSCGLE--------LDSPVANT-LLAMYSKCQCLQAARK 215

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD  P  ++VS   II  + +     EA +LF  M+   I+P   TF S +P    L  
Sbjct: 216 LFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLS 275

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L   K++H +  +  +  +VF+ SA++D+Y K   +E A ++   +      S+ T++C 
Sbjct: 276 LKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSS-----SFDTVVC- 329

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                      MI GY   G+N+EA+  F  +++E + P   T 
Sbjct: 330 -------------------------TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTF 364

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLVFDKL 301
                A A +AAL +GK  H   +K   KLD    VG++++  YAKCG ++ +  VF+++
Sbjct: 365 SSIFPAFAGLAALNLGKELHGSIIK--TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRI 422

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           TE++ + WN++I   +QNGR  EAI  F +M + G R + V++ G L AC +   +  G 
Sbjct: 423 TEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGK 482

Query: 362 SYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRF 393
                  L   G L+ + YA   ++D+ ++ G  
Sbjct: 483 EIHG---LMIKGPLRSDLYAESSLIDMYAKCGNL 513



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 131/274 (47%), Gaps = 31/274 (11%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  F     +  A+  + +ML   + P ++TF  V+ +   L+ + +GK +H     +G
Sbjct: 29  MIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMG 88

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+ +VFVGS+++ LY             E+ H                     DA  LF 
Sbjct: 89  LKEDVFVGSSLIKLYA------------ENGH-------------------LSDAQYLFD 117

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            +P ++ V WN M+ GY + G +  A+ +F+EM    + PN  T  C +   A+ A L +
Sbjct: 118 NIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDL 177

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G   H  AV    +LD  V N+L++ Y+KC  ++ +  +FD   + ++V+WN +I GY Q
Sbjct: 178 GTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQ 237

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           NG   EA   F  M   GI+P+ +T    L   N
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN 271



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 2/172 (1%)

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            +DA  LF  +      +WN MI G++  G+   A+  +++ML  G+ P+  T P  + A
Sbjct: 8   LKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKA 67

Query: 250 AANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
              + ++ MGK  H   V  +G K DVFVG+SLI  YA+ G + D+  +FD + +++ V 
Sbjct: 68  CCGLKSVKMGKIVHE-TVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVL 126

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           WN ++ GY +NG    AI+ F  MR + I+PN VT   +L  C    +++ G
Sbjct: 127 WNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 31/292 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E+   S    +FD +P  + V    ++  + K      AI +F  M    I+P+  TF 
Sbjct: 104 AENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFA 163

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+    +   L+LG QLH  A   GL+ +  V + +L +Y K   ++ A ++F+ +   
Sbjct: 164 CVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQS 223

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           ++VS+                               N +I GY Q G   EA +LF  M+
Sbjct: 224 DLVSW-------------------------------NGIISGYVQNGLMGEAEHLFRGMI 252

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G+ P+  T    +     + +L   K  H   ++    LDVF+ ++LI  Y KC  +E
Sbjct: 253 SAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVE 312

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
            +  +  + +  + V    +I GY  NG+ +EA+E F  +    ++P  VT 
Sbjct: 313 MAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTF 364



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y + GS++D+  +F  L       WN +I G+   G+   A+ F+ +M   G+ P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLY 401
              ++ AC     V+ G        L     LK + +  + ++ L + +G   +A+    
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMG---LKEDVFVGSSLIKLYAENGHLSDAQYLFD 117

Query: 402 DLPFDPGIGFWKALLGG 418
           ++P    +  W  +L G
Sbjct: 118 NIPQKDSV-LWNVMLNG 133


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 276/479 (57%), Gaps = 12/479 (2%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           AI T  V+C        S  QVFD++ D  +VS  ++I  ++K    +EAI LF  ML L
Sbjct: 177 AILTAYVAC----RLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQL 232

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            +    FT  S++ +S+   +L+LG+ +H +    G++ +  V +A++D+Y K   ++ A
Sbjct: 233 GVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFA 292

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF+   + +VVS+T+M+     +   E+A+++F  MP +NVVSWN++I    Q G+  
Sbjct: 293 KHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYT 352

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EAV LF  M   G++P+ +TL   +   +N   L +GK  H      +  + V + NSLI
Sbjct: 353 EAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLI 412

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKCG+++ ++ +F  + E+N+V+WN +I   A +G GEEAIE F+ M+ +G+ P+ +
Sbjct: 413 DMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEI 472

Query: 343 TLLGLLWACNHTGLVEKGYSYF----SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           T  GLL AC+H+GLV+ G  YF    S  ++  PG+   EHYACMVDLL R G   EA  
Sbjct: 473 TFTGLLSACSHSGLVDMGRYYFDIMISTFRIS-PGV---EHYACMVDLLGRGGFLGEAMT 528

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
            +  +P  P +  W ALLG C+I+ N+E+ +   +++L L   +   YV+LSN  S + +
Sbjct: 529 LIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQR 588

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           WD++  IR+ M + G+ +    S+IEI    + F+  D+ H  +  IY++L    + ++
Sbjct: 589 WDDMKKIRKIMDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSILDQLMDHLK 647



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 194/436 (44%), Gaps = 73/436 (16%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           C  E D     H +FD++P  N      +I  ++  +   +++ LF +M+     P++FT
Sbjct: 81  CVQEGD-LRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFT 139

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  V+ +  A         +HA A K+G+  +  V +AIL  Y+    I  A +VF+D  
Sbjct: 140 FPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDIS 199

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +  +VS+ +MI G  K    ++A+ LFQ                               E
Sbjct: 200 DRTIVSWNSMIAGYSKMGFCDEAILLFQ-------------------------------E 228

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           ML+ G+  +  TL   + A++    L +G+  H   V    ++D  V N+LI  YAKCG 
Sbjct: 229 MLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGH 288

Query: 291 MEDSLLVFDKLTE-------------------------------RNIVTWNAVICGYAQN 319
           ++ +  VFD++ +                               +N+V+WN++IC   Q 
Sbjct: 289 LQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQE 348

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYSYFSQAKLEDPGMLK 376
           G+  EA+E F RM I+G+ P+  TL+ +L  C++TG   L ++ + Y     +     L 
Sbjct: 349 GQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLC 408

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARR 434
                 ++D+ ++ G  + A +  + +P +  +  W  ++G   +H   E  +  F + +
Sbjct: 409 NS----LIDMYAKCGALQTAIDIFFGMP-EKNVVSWNVIIGALALHGFGEEAIEMFKSMQ 463

Query: 435 ILALDPEDVSSYVMLS 450
              L P++++   +LS
Sbjct: 464 ASGLYPDEITFTGLLS 479



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 137/295 (46%), Gaps = 37/295 (12%)

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP-----CA---- 246
           LF ++P  N   +N +I GYS +    +++ LF +M+  G +PN  T P     CA    
Sbjct: 93  LFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPF 152

Query: 247 ----IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +I  A    LGMG   HAC           V N++++ Y  C  +  +  VFD ++
Sbjct: 153 YWEAVIVHAQAIKLGMGP--HAC-----------VQNAILTAYVACRLILSARQVFDDIS 199

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
           +R IV+WN++I GY++ G  +EAI  F+ M   G+  +  TL+ LL A +    ++ G  
Sbjct: 200 DRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRF 259

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            + Y     +E   ++       ++D+ ++ G  + AK  ++D   D  +  W +++   
Sbjct: 260 VHLYIVITGVEIDSIVTNA----LIDMYAKCGHLQFAKH-VFDQMLDKDVVSWTSMVNA- 313

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
             ++N  L E A +    +  ++V S+  +   L   G++     +   M   G+
Sbjct: 314 --YANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGV 366


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/436 (36%), Positives = 261/436 (59%), Gaps = 14/436 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD++P  +VVS   +I  + +    E+A+ LF  +   ++     T+ +++       
Sbjct: 219 ELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDV----ITWNTMMAGYAQCG 274

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D+    +L         + N+   + ++  Y++  S++EA ++F+     NV+S+  +I 
Sbjct: 275 DVENAVELFEKMP----EQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVIS 330

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G  +  + E+ALKLF+ MP  NVVSWNAMI GYSQ G+ E A+ LF +M    + PN  T
Sbjct: 331 GFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTET 390

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A A +A L  G   H   ++   + DV VGN+L+  YAKCGS+ED+  VFD++ 
Sbjct: 391 FAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMR 450

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +++  + +A+I GYA NG  +E++E FE+M+  G++P+ VT +G+L AC H GLV++G  
Sbjct: 451 QQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQ 510

Query: 363 YF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           YF   ++     P M   EHY CM+DLL R+G F EA + +  +P  P    W +LL  C
Sbjct: 511 YFDIMTRFYHITPAM---EHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSAC 567

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           + H+N++LGE  A+ ++AL+P++ + YV+LSN  + AG+WD++ ++R  MK++ + +  G
Sbjct: 568 RTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLG 627

Query: 480 CSWIEIKSKVHVFVTG 495
           CSWI IK +VH F+ G
Sbjct: 628 CSWIVIKKQVHAFLVG 643



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 202/357 (56%), Gaps = 19/357 (5%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C ++ SL     LH+    ++I+TQ     + +  ++    VS   +        +
Sbjct: 70  LLQGCLNAKSLPDAKLLHA----HMIQTQF----ECQDISLGNKLVSIYVKLGSLVEARR 121

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFDE+P  NVVS T +I  +A+  H +EA+  F  M  + I+P+ FTF S++P+ T LE 
Sbjct: 122 VFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEV 181

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L    + H    K G +SNVFVG+ ++D+Y K   IE A  +F+     +VVS+  MI G
Sbjct: 182 LG---EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAG 238

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            ++    EDALKLFQE+P R+V++WN M+ GY+Q G  E AV LF +M  + LV  ++ +
Sbjct: 239 YVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMI 298

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   +   A  +         + + + +V   N++IS +A+ G +E++L +F  + E
Sbjct: 299 AGYVQNGSVKEAFKL--------FQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPE 350

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            N+V+WNA+I GY+QNG+ E A++ F +M++  ++PN  T   +L AC    ++E+G
Sbjct: 351 CNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQG 407



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 184/394 (46%), Gaps = 50/394 (12%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           ++    KQ    EA+++   M+   I P   T+ S++      + L   K LHA   +  
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 139 LQ-SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
            +  ++ +G+ ++ +Y+KL S+ EA RVF++    NVVS+T MI    + E  ++AL  F
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
            EM  ++V                             G+ PNH T    + A  ++  LG
Sbjct: 155 YEM--QDV-----------------------------GIQPNHFTFASILPACTDLEVLG 183

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
               FH   VK   + +VFVGN L+  YAK G +E +  +FDK+ +R++V+WNA+I GY 
Sbjct: 184 ---EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYV 240

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
           QNG  E+A++ F+ +     + + +T   ++      G VE     F   K+ +  ++  
Sbjct: 241 QNGLIEDALKLFQEIP----KRDVITWNTMMAGYAQCGDVENAVELFE--KMPEQNLVS- 293

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA 437
             +  M+    ++G  KEA +    +P +  +  W A++ G   +  VE     A ++  
Sbjct: 294 --WNTMIAGYVQNGSVKEAFKLFQIMP-ERNVISWNAVISGFAQNGQVE----EALKLFK 346

Query: 438 LDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMK 470
             PE +V S+  +    S  G+ +N   +  +M+
Sbjct: 347 TMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQ 380



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 31/221 (14%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  +++ +     ++F  +P+ NVVS   +I  +++    E A+ LF +M +++++P+ 
Sbjct: 329 ISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNT 388

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF  V+P+  AL  L  G + H    + G QS+V VG+ ++ +Y K  SIE+A +VF+ 
Sbjct: 389 ETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFD- 447

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                             R R +D+  L            +AMI GY+  G ++E++ LF
Sbjct: 448 ------------------RMRQQDSASL------------SAMIVGYAINGCSKESLELF 477

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
            +M   GL P+  T    + A  +   +  G+ +     +F
Sbjct: 478 EQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRF 518


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 266/455 (58%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFDE+    +V  T II  +      E+A+ LF  M  + + P      +V+ +   L 
Sbjct: 147 QVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLG 206

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL + K +H +  K G++ + FV S ++  Y +  S++ A R F++T   N+V + TMI 
Sbjct: 207 DLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIH 266

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
             ++    E   +LFQ MP R+VVSWN+MIGG+++ G+ +EA+  F EM   G+ PN  T
Sbjct: 267 QSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALT 326

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+  AL  G   HA   K     D  + +SLI  Y+KCG ++ ++ +F++ T
Sbjct: 327 LLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEEST 386

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R++ TW +++CG A +GRGE+A+ +F +M+   ++P+ VT++G+L AC H GL+++G+ 
Sbjct: 387 RRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWW 446

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF   +     + K EHY  MVDLL R G  KEA + +  +P +     W A L  C++H
Sbjct: 447 YFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVH 506

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
           +NVELGE AARR+L L P D  + VMLSN  +   KWD    +R+E+K+KG+ + PGCS 
Sbjct: 507 NNVELGEVAARRLLGLXPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSS 566

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           IE+   VH F+ GD +H    EI +++    + +R
Sbjct: 567 IEVNGSVHGFLVGDNSHPCYTEINSMVEKIEKLMR 601



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 186/408 (45%), Gaps = 73/408 (17%)

Query: 90  EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAI 149
           +  +  + + L   +RP+  TF  ++ +  + +++  G+++HA   + G   + FV  A+
Sbjct: 73  DPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGAL 132

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           L  Y+    + +  +VF++   P +V +T +I   +     E AL+LF+ M  R V    
Sbjct: 133 LGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTM--REV---- 186

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
                                    GL P+   +   + A   +  LG+ K+ H    K 
Sbjct: 187 -------------------------GLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKS 221

Query: 270 LGKLDVFVGNSLISFYAKCGSME-----------------DSLL--------------VF 298
             ++D FV ++LIS Y +CGS++                 ++++              +F
Sbjct: 222 GIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLF 281

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
             + +R++V+WN++I G+A+ G+ +EA+ +F  M  +G+ PN +TLL  L AC   G ++
Sbjct: 282 QSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALD 341

Query: 359 KG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            G   ++Y  +  +   G L     + ++D+ S+ G   +A + +++      +  W ++
Sbjct: 342 TGAWIHAYVDKNDMNRDGSLD----SSLIDMYSKCGDIDKAVQ-IFEESTRRDLFTWTSI 396

Query: 416 LGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
           + G  +H   E  L  F+  +   + P+DV+   +LS A + AG  D 
Sbjct: 397 VCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLS-ACAHAGLLDQ 443



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 118/277 (42%), Gaps = 13/277 (4%)

Query: 204 NVVSWNAMIGGYSQTG--RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
           NV  WN MI    + G    +  +  +++ LR GL PN  T    + A  +   +  G+ 
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            HA  V+       FV  +L+ FY  CG +     VFD++ +  +V W  +I  Y     
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWAC---NHTGLVEKGYSYFSQAKLEDPGMLKPE 378
            E+A+E F  MR  G+ P+ V +  ++ AC      G+ +  + +  ++ +E    +   
Sbjct: 173 PEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVS-- 230

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
             + ++      G    A  F  + P    I  W  ++     H+N+ELG+   +   ++
Sbjct: 231 --STLISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELGK---QLFQSM 284

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
              DV S+  +    +  G++        EM+  G++
Sbjct: 285 PDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVS 321


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/528 (32%), Positives = 281/528 (53%), Gaps = 68/528 (12%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S   VFD++   N+V+ T +I R+++    ++A+ LF R+L+    P +FT  S++ +  
Sbjct: 200 SARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACV 259

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            LE  +LGKQLH+W  + GL S+VFVG  ++D+Y K +++E + ++F    + NV+S+T 
Sbjct: 260 ELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTA 319

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVS-------------------------------- 207
           +I G ++  + ++A+KLF  M H +V                                  
Sbjct: 320 LISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLG 379

Query: 208 -------WNAMIGGYSQTGRNEEAVNLFIEMLREGLVP------------------NHS- 241
                   N++I  Y+++G  E A   F  +  + L+                   NH  
Sbjct: 380 LSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEV 439

Query: 242 ----------TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
                     T  C +  AA I  +  G+  HA  VK     ++ + N+LIS Y+KCG+ 
Sbjct: 440 EHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNK 499

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           E +L VF+ +  RN++TW ++I G+A++G   +A+E F  M   G++PN VT + +L AC
Sbjct: 500 EAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSAC 559

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GL+++ + +F+          + EHYACMVDLL RSG   EA EF+  +PFD     
Sbjct: 560 SHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALV 619

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W+  LG C++H N +LGE AA++IL  +P D ++Y++LSN  +  G+WD+V+ +R+ MK+
Sbjct: 620 WRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQ 679

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           K + +  G SWIE+ ++VH F  GD +H    +IY  L     +I+  
Sbjct: 680 KKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNL 727



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 136/284 (47%), Gaps = 34/284 (11%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN---IRPSEFTFGSVIPSSTALEDLNLGK 128
           ++VS + II  FA       A+  F  ML  +   I P+E+ F +++ S +       G 
Sbjct: 106 DLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGL 165

Query: 129 QLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            + A+  K G   S+V VG A++D++ K                           G L  
Sbjct: 166 AIFAFLLKTGYFDSHVCVGCALIDMFTK---------------------------GGLD- 197

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
              + A  +F +M H+N+V+W  MI  YSQ G  ++AV+LF  +L     P+  TL   +
Sbjct: 198 --IQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLL 255

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A   +    +GK  H+  ++     DVFVG +L+  YAK  ++E+S  +F+ +   N++
Sbjct: 256 SACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVM 315

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +W A+I GY Q+ + +EAI+ F  M    + PN  T   +L AC
Sbjct: 316 SWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKAC 359



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 152/350 (43%), Gaps = 57/350 (16%)

Query: 84  AKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE------DLNLGKQLHAWATKV 137
           AK   +E      SR+ L    P       +I SS  L+      +L LGK LH      
Sbjct: 16  AKDLKFESLRKAISRLDLTTTSP-------LIKSSLLLKACIRSGNLELGKLLHHKLIDS 68

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           GL  +  + ++++ LY K                          CG      +E+AL +F
Sbjct: 69  GLPLDSVLLNSLITLYSK--------------------------CG-----DWENALSIF 97

Query: 198 QEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEML---REGLVPNHSTLPCAIIAAAN 252
           + M H  R++VSW+A+I  ++       A+  F+ ML   R  + PN       + + +N
Sbjct: 98  RNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSN 157

Query: 253 IAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCG-SMEDSLLVFDKLTERNIVTW 309
                 G +  A  +K  G  D  V VG +LI  + K G  ++ + +VFDK+  +N+VTW
Sbjct: 158 PLFFTTGLAIFAFLLK-TGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTW 216

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
             +I  Y+Q G  ++A++ F R+ ++   P+  TL  LL AC        G    S   +
Sbjct: 217 TLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSW--V 274

Query: 370 EDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              G+       C +VD+ ++S   + +++ +++      +  W AL+ G
Sbjct: 275 IRSGLASDVFVGCTLVDMYAKSAAVENSRK-IFNTMLHHNVMSWTALISG 323


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/437 (37%), Positives = 252/437 (57%), Gaps = 31/437 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +V +VFD +    V S   ++  +A+     +A+ L+ +M    + P  FT GS++ + +
Sbjct: 262 AVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            ++ L+ G+++H +A + GL  + F+G ++L LYI                         
Sbjct: 322 RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYI------------------------- 356

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CG    + F  A  LF  M HR++VSWN MI GYSQ G  +EA+NLF +ML +G+ P 
Sbjct: 357 -CCG----KPFA-AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPY 410

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
              + C   A + ++AL +GK  H  A+K     D+FV +S+I  YAK G +  S  +FD
Sbjct: 411 EIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFD 470

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           +L E+++ +WN +I GY  +GRG+EA+E FE+M   G++P+  T  G+L AC+H GLVE 
Sbjct: 471 RLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVED 530

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G  YF+Q         K EHY C+VD+L R+GR  +A   + ++P DP    W +LL  C
Sbjct: 531 GLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSC 590

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +IH N+ LGE  A ++L L+PE   +YV++SN  + +GKWD+V  +R  MK+ G+ +  G
Sbjct: 591 RIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAG 650

Query: 480 CSWIEIKSKVHVFVTGD 496
           CSWIE+  KVH F+ GD
Sbjct: 651 CSWIEVGGKVHNFLIGD 667



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 202/402 (50%), Gaps = 49/402 (12%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEF 109
           CGS SD       VFD++   N+     I+  + +   +E+A+ +FS ++ +   +P  F
Sbjct: 154 CGSPSDS----RMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNF 209

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T   VI +   L DL LG+ +H  ATK+ L S+VFVG+A++ +Y K   +EEA +     
Sbjct: 210 TLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVK----- 264

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                                    ++F  M  + V SWNA++ GY+Q     +A++L++
Sbjct: 265 -------------------------RVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYL 299

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M   GL P+  T+   ++A + + +L  G+  H  A++    +D F+G SL+S Y  CG
Sbjct: 300 QMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCG 359

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
               + ++FD +  R++V+WN +I GY+QNG  +EAI  F +M  +GI+P  + ++ +  
Sbjct: 360 KPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCG 419

Query: 350 ACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           AC+    +  G   + +  +A L +   +     + ++D+ ++ G    ++  ++D   +
Sbjct: 420 ACSQLSALRLGKELHCFALKAHLTEDIFVS----SSIIDMYAKGGCIGLSQR-IFDRLRE 474

Query: 407 PGIGFWKALLGGCQIHSN----VELGEFAARRILALDPEDVS 444
             +  W  ++ G  IH      +EL E   R  L L P+D +
Sbjct: 475 KDVASWNVIIAGYGIHGRGKEALELFEKMLR--LGLKPDDFT 514


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 264/455 (58%), Gaps = 31/455 (6%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+   D N ++ + +I  +++     +A+ LFS+M      PSEFT   V+ + + +  
Sbjct: 270 LFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAA 329

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  GKQ H +  K G ++ ++  +A++D+Y K     +A + F+    P++V        
Sbjct: 330 IEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVL------- 382

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                   W ++I GY Q G+NEEA++++  M    ++PN  T+
Sbjct: 383 ------------------------WTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTM 418

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A +N+AAL  GK  HA  +K+    ++ + ++L + YAKCGS+E+ +L+F ++ +
Sbjct: 419 ASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQ 478

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+IV+WNA+I G +QNG G EA+E FE MR+ G +P+ +T + +L AC+H G+V++G++Y
Sbjct: 479 RDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAY 538

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F+    E   + + EHYACMVD+LSR+G+  EAKEF+     D G+  W+ LL  C+ H 
Sbjct: 539 FNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHC 598

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N ELG +A  +++ L   + S+YV+LS+  +  G+  +V  +RR MK +G+ +  GCSWI
Sbjct: 599 NYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWI 658

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           E+KS VHVFV GD+ H   +EI   +    + +++
Sbjct: 659 ELKSHVHVFVVGDQIHPQIEEIQGAIWRLRKHMKD 693



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 189/392 (48%), Gaps = 39/392 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD +P+ N+VS TT+I  +A +   +EA+ +F  M L+    +EF F SV+ +    E
Sbjct: 168 KLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPE 227

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            ++ GKQ+H    K G+   V V +A++ +Y K  ++  +  +FE   + N ++++ +I 
Sbjct: 228 FVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALIT 287

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G                               YSQ G + +A+ LF +M   G VP+  T
Sbjct: 288 G-------------------------------YSQAGDSHKALKLFSKMHYAGFVPSEFT 316

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A +++AA+  GK  H   +K   +  ++   +L+  YAK G   D+   FD L 
Sbjct: 317 LVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLL 376

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E ++V W ++I GY QNG+ EEA+  + RM++  I PN +T+  +L AC++   +E+G  
Sbjct: 377 EPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQ 436

Query: 363 YFSQAKLEDPGMLKPEH--YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
               A+    G L PE    + +  + ++ G  +E    ++       I  W A++ G  
Sbjct: 437 I--HARTIKYG-LGPELSIRSALSTMYAKCGSLEEGV-LIFRRMLQRDIVSWNAMISGLS 492

Query: 421 I--HSNVELGEFAARRILALDPEDVSSYVMLS 450
              H    L  F   R+    P+ ++   +LS
Sbjct: 493 QNGHGREALELFEEMRLEGTKPDHITFVTVLS 524



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 181/364 (49%), Gaps = 48/364 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEE--AIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           VF+ +   NVVS   +I   +          + LF RM+  NI P   TF  V  ++   
Sbjct: 65  VFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAA-- 122

Query: 122 EDLNLG-----KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
             LNLG     +Q+H    K     +VFVGS++++ Y K+  + EA ++F+     N+VS
Sbjct: 123 --LNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVS 180

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +TTMI G   ++  ++AL +F  M  R V                E  +N F+       
Sbjct: 181 WTTMISGYASKQMAKEALGVFGLM--RLV----------------EGNLNEFV------- 215

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSL 295
               +++  A++    + +   GK  H   VK  G L+ V V N+L++ YAKCG++  SL
Sbjct: 216 ---FTSVLSALVCPEFVDS---GKQVHCVVVKN-GVLEFVSVLNALVTMYAKCGNLNYSL 268

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           ++F+  +++N +TW+A+I GY+Q G   +A++ F +M   G  P+  TL+G+L AC+   
Sbjct: 269 MLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVA 328

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            +E+G    +   L   G     + A  +VD+ ++ G   +A++  +D   +P +  W +
Sbjct: 329 AIEEGKQ--THGYLLKSGYETQIYTATALVDMYAKFGFTGDARKG-FDFLLEPDLVLWTS 385

Query: 415 LLGG 418
           ++ G
Sbjct: 386 IIAG 389



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 43/237 (18%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATR 164
           P   +F +++      + L  G+ LHA   K+  L S  ++ + ++  Y K   +  A  
Sbjct: 5   PQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKL 64

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE- 223
           VFE+                               + H+NVVS+N +I G S  G     
Sbjct: 65  VFEN-------------------------------LKHKNVVSYNCLIHGLSHNGSKGSN 93

Query: 224 -AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-----DVFV 277
             + LF  M+   ++P+  T P    AAA    L +G +F A  V  LG       DVFV
Sbjct: 94  FVLELFRRMIANNILPDAHTFPGVFTAAA----LNLGCNFDARQVHVLGIKTASIDDVFV 149

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
           G+SL++FY K G + ++  +FD++ ERN+V+W  +I GYA     +EA+  F  MR+
Sbjct: 150 GSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRL 206



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 5/117 (4%)

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSL 295
           P + +    +I  A+  +L  G+  HA  +K  +L   + ++ N+LI FYAKCG +  + 
Sbjct: 5   PQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCN-YLANNLIKFYAKCGHLHGAK 63

Query: 296 LVFDKLTERNIVTWNAVICGYAQNG-RGEE-AIEFFERMRINGIRPNGVTLLGLLWA 350
           LVF+ L  +N+V++N +I G + NG +G    +E F RM  N I P+  T  G+  A
Sbjct: 64  LVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTA 120


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/467 (34%), Positives = 269/467 (57%), Gaps = 10/467 (2%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +    F+E+     V    +I  + +     EA  LF RM+   I P EFTF S++ +  
Sbjct: 248 AARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACA 307

Query: 120 ALEDLNLGKQLHAWATKVGL----QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
                  GK +H    ++      ++ + V +A++ LY K   I  AT++F+     +VV
Sbjct: 308 NAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVV 367

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+ T++ G ++    ++A ++F+EMP+++ +SW  M+ GY   G  E+A+ LF +M  E 
Sbjct: 368 SWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSED 427

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P   T   A+ A   + AL  GK  HA  V+   +     GN+L++ YA+CG+++D+ 
Sbjct: 428 VKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDAR 487

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           LVF  +   + V+WNA+I    Q+G G EA+E F++M   GI P+ ++ L +L ACNH G
Sbjct: 488 LVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAG 547

Query: 356 LVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           LV+ G+ YF   + +    PG    +HYA ++DLL R+GR  EA++ +  +PF+P    W
Sbjct: 548 LVDDGFQYFESMERDFGISPG---EDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIW 604

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           +A+L GC+I+ ++ELG +AA ++  + PE   +Y++LSN  S AG+W + + +R+ M+++
Sbjct: 605 EAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDR 664

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           G+ + PGCSWIE+ +KVHVF+ GD  H    E+Y  L     ++R+ 
Sbjct: 665 GVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKL 711



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 189/399 (47%), Gaps = 24/399 (6%)

Query: 16  KLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVP--DLNV 73
           +L  L++L+P+  + T     +    P   T  VS  + + +       FD VP    + 
Sbjct: 65  RLLHLYTLSPD--LATPAVLFRADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDT 122

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLG--KQ 129
           V    +I  FA+      A+ +F  +L  +  +RP +++F S++ +   + DL +    Q
Sbjct: 123 VLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQ 182

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSS---IEEATRVFEDTHNPNVVSYTTMICGLLK 186
           LH    K+G  + + V +A++ LY+K  +     +A +V ++    + +++TT++ G ++
Sbjct: 183 LHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVR 242

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
           +     A   F+E+     V WNAMI GY Q+G   EA  LF  M+ + + P+  T    
Sbjct: 243 KGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSL 302

Query: 247 IIAAANIAALGMGKSFHACAVK----FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           + A AN      GKS H   ++    F+ +  + V N+L++ Y+K G +  +  +FD +T
Sbjct: 303 LSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT 362

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +++V+WN ++ GY ++G  + A   F+ M         V + G +    H GL E    
Sbjct: 363 LKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYV----HGGLAEDALK 418

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEF 399
            F+Q + ED   +KP    YA  V      G  K  K+ 
Sbjct: 419 LFNQMRSED---VKPCDYTYAGAVAACGELGALKHGKQL 454



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 97/191 (50%), Gaps = 5/191 (2%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ES    +  ++F E+P  + +S   ++  +      E+A+ LF++M   +++P ++T+  
Sbjct: 378 ESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAG 437

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + +   L  L  GKQLHA   + G +++   G+A+L +Y +  ++++A  VF    N +
Sbjct: 438 AVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVD 497

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFI 229
            VS+  MI  L +     +AL+LF +M  + +    +S+  ++   +  G  ++    F 
Sbjct: 498 SVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFE 557

Query: 230 EMLRE-GLVPN 239
            M R+ G+ P 
Sbjct: 558 SMERDFGISPG 568


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/438 (37%), Positives = 253/438 (57%), Gaps = 5/438 (1%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E        +V DE+P+ N VS  T++ R  ++ + +EA+ L+S+ML    RP+   F 
Sbjct: 323 AELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFS 382

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +  +L+DL  G+++H    K+   +NVFV SA++D+Y K   + +A  +F      
Sbjct: 383 SVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQK 442

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+V + ++I G     +  +A +LF++MP RNV SWN++I GY+Q  +  +A+  F  ML
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAML 502

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G  P   T    ++A A++ +L MGK  HA  +K   K  +FVG +L   YAK G ++
Sbjct: 503 ASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLD 562

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S  VF ++ +RN V W A+I G A+NG  EE+I  FE M   GI PN  T L +L+AC+
Sbjct: 563 SSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622

Query: 353 HTGLVEKGYSYFS--QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H+GLVE    YF   QA    P   K +HY CMVD+L+R+G   EA++ L  +       
Sbjct: 623 HSGLVEHAMHYFEMMQACGISP---KAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEAN 679

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL  C I+ N E+GE AA+R+  LD ++ + YV+LSN  +  GKW + + +R  MK
Sbjct: 680 SWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739

Query: 471 EKGMTRVPGCSWIEIKSK 488
              + +  GCSW++I+ +
Sbjct: 740 GINLKKDGGCSWVQIRDE 757



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 182/389 (46%), Gaps = 36/389 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +++ + P  +V   T +I  F      ++A+ +F  ML   + P+E T  SVI +     
Sbjct: 200 ELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAG 259

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + +L   +   A K  L   N+ V ++++ LY++    + A R+F++    +VVS+T ++
Sbjct: 260 EFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALL 319

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    E A ++  EMP RN VSW  ++  + Q G  +EAV+L+ +ML +G  PN S
Sbjct: 320 DVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNIS 379

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A A++  L  G+  H   +K     +VFV ++LI  Y KC  + D+ ++F  L
Sbjct: 380 CFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSL 439

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMR---------------------------- 333
            ++NIV WN++I GY+ N +  EA E F++M                             
Sbjct: 440 PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFH 499

Query: 334 ---INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSR 389
               +G  P  +T   +L AC     +E G      AK+   G+ +       + D+ ++
Sbjct: 500 AMLASGQSPGEITFSSVLLACASLCSLEMG--KMVHAKIIKLGIKESIFVGTALSDMYAK 557

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           SG    +K   Y++P    +  W A++ G
Sbjct: 558 SGDLDSSKRVFYEMPKRNDVA-WTAMIQG 585



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 34/298 (11%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           ++K   I  A R+F+     +VVSYTTM+  L+KR    DA++L+++ P  +V  + AMI
Sbjct: 158 HVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMI 217

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK---- 268
            G+      ++A+ +F EML  G+ PN  TL   I A        +  S    A+K    
Sbjct: 218 AGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLL 277

Query: 269 -------------FLGK---------------LDVFVGNSLISFYAKCGSMEDSLLVFDK 300
                        +L K                DV    +L+  YA+ G +E +  V D+
Sbjct: 278 DKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDE 337

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN V+W  ++  + Q G  +EA+  + +M  +G RPN      +L AC     +  G
Sbjct: 338 MPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSG 397

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               +Q  L+          + ++D+  +  +  +A+   Y LP    I  W +L+ G
Sbjct: 398 RKIHNQT-LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNSLISG 453


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/461 (34%), Positives = 265/461 (57%), Gaps = 1/461 (0%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++  ++FD + + +VVS  TI+  +AKQ  + EAI L+     L++  + F+F  V+   
Sbjct: 146 NNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILC 205

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L++L L KQ+H      G  SN+ + S+I+D Y K   +  A  +F++    ++ ++T
Sbjct: 206 VKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWT 265

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           T++ G  K      A +LF +MP +N VSW+A+I GY++     EA++ F +M++ G+ P
Sbjct: 266 TIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINP 325

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
              T    + A A+IAAL  GK  H   ++   + +  V +SLI  Y+KCG +E S  VF
Sbjct: 326 EQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVF 385

Query: 299 DKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
             +  ++++V WN +I   AQNG GE+A++ F  M  +G++P+ +T + +L AC+H+GLV
Sbjct: 386 HLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLV 445

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           ++G  +F     +       EHYAC++DLL R+G F E    L ++   P    W ALLG
Sbjct: 446 QEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLG 505

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C+IH+N+ELG   A R++ L P+  ++YV L++  +  GKW++V  +R  M EK + + 
Sbjct: 506 VCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKE 565

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            G SWI++ +K H F+  DR H + +EIY +L        E
Sbjct: 566 RGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARHTEE 606



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 134/324 (41%), Gaps = 32/324 (9%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           PD   +     +   + Q    EA+    R+    IR     F  ++      +    GK
Sbjct: 23  PDSTGLCIAQSLLDLSSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGK 82

Query: 129 QLHAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            +H      G +     V + ++ +Y +     EA +VF+     N+ S+  M+ G  K 
Sbjct: 83  CVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKL 142

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
               +A KLF  M  ++VVSWN ++  Y++ G   EA+ L+ +  R  +  N  +    +
Sbjct: 143 GDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVL 202

Query: 248 IAAANIAALGMGKSFHA----------------------------CAVKFLGKL---DVF 276
           I    +  L + K  H                             CA     ++   D+ 
Sbjct: 203 ILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIH 262

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
              +++S YAK G M  +  +F ++ E+N V+W+A+I GYA+N  G EA+++F +M   G
Sbjct: 263 AWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFG 322

Query: 337 IRPNGVTLLGLLWACNHTGLVEKG 360
           I P   T    L AC     ++ G
Sbjct: 323 INPEQYTFSSCLCACASIAALKHG 346



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 10/210 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  ++    +S  ++F ++P+ N VS + +I  +A+     EA+  F++M+   I 
Sbjct: 265 TTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGIN 324

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P ++TF S + +  ++  L  GKQ+H +  +   + N  V S+++D+Y K   +E +  V
Sbjct: 325 PEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCV 384

Query: 166 FEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEM------PHRNVVSWNAMIGGYSQT 218
           F    N  +VV + TMI  L +    E A+++F +M      P R  +++  ++   S +
Sbjct: 385 FHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDR--ITFIVILSACSHS 442

Query: 219 GRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
           G  +E +  F  M  + G+ P+     C I
Sbjct: 443 GLVQEGLRFFKAMTYDHGVFPDQEHYACLI 472


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 265/459 (57%), Gaps = 9/459 (1%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +    +  +    HQ+FDE+P+ +  S   ++  + +  ++E+A   F RM   +     
Sbjct: 100 IGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAA--- 156

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            ++ ++I       ++   ++L        ++ N    +A++  YI+   +E+A+  F+ 
Sbjct: 157 -SWNTMITGYARRGEMEKARELFY----SMMEKNEVSWNAMISGYIECGDLEKASHFFKV 211

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMP-HRNVVSWNAMIGGYSQTGRNEEAVNL 227
                VV++T MI G +K ++ E A  +F++M  ++N+V+WNAMI GY +  R E+ + L
Sbjct: 212 APVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKL 271

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F  ML EG+ PN S L  A++  + ++AL +G+  H    K     DV    SLIS Y K
Sbjct: 272 FRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCK 331

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG + D+  +F+ + ++++V WNA+I GYAQ+G  ++A+  F  M  N IRP+ +T + +
Sbjct: 332 CGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAV 391

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L ACNH GLV  G +YF     +     +P+HY CMVDLL R+G+ +EA + +  +PF P
Sbjct: 392 LLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRP 451

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               +  LLG C++H NVEL EFAA ++L L+ ++ + YV L+N  +   +W++V+ +R+
Sbjct: 452 HAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRK 511

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
            MKE  + +VPG SWIEI++KVH F + DR H   D I+
Sbjct: 512 RMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIH 550


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/460 (36%), Positives = 261/460 (56%), Gaps = 1/460 (0%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIP 116
            +   ++FD     ++VS  T+IG + ++    EA+ +F RM+    + P E T   V+ 
Sbjct: 171 MAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVS 230

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
            S  L DL LG++LH +    G++  V + + ++D+YIK   +E A  VFE      +VS
Sbjct: 231 GSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVS 290

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +TTMI G  +    +DA K+F EMP R+V  WNA++ GY Q  R +EA+ LF +M    +
Sbjct: 291 WTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMV 350

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            P+  T+   + A + + AL MG   H    +    L V +G +L+  Y+KCG++E ++ 
Sbjct: 351 EPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIR 410

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VF ++ E+N +TW A+I G A +G  + AI++F+RM   G++P+ +T +G+L AC H GL
Sbjct: 411 VFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGL 470

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V++G  +FS    +     K +HY+CMVDLL R+G   EA+  +  +P +P    W AL 
Sbjct: 471 VKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALF 530

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C++H N+ LGE AA +++ LDP D   YV+L+N  + A        +R  M+  G+ +
Sbjct: 531 FACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEK 590

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           VPGCS IE+   VH F+  D++H     IY  L   T QI
Sbjct: 591 VPGCSCIELNGVVHEFIVKDKSHTDIAAIYDCLHEITLQI 630



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 180/388 (46%), Gaps = 73/388 (18%)

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
           LL + RP   TF  ++ +   L++ N G  +      +G  ++VFV +A +      SS+
Sbjct: 112 LLRSARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSM 171

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
            EA ++F+ +H  ++VS+ T+I G ++R                               G
Sbjct: 172 AEARKLFDGSHVRDLVSWNTLIGGYVRR-------------------------------G 200

Query: 220 RNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHA--------CAVKFL 270
              EA+ +F  M+ +G V P+  T+   +  +A +  L +G+  H         C V+ +
Sbjct: 201 VPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLM 260

Query: 271 ----------GKLD----VFVG---------NSLISFYAKCGSMEDSLLVFDKLTERNIV 307
                     G L+    VF G          ++I  YA+ G M+D+  VFD++ ER++ 
Sbjct: 261 NVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVF 320

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYF 364
            WNA++ GY Q  RG+EA+  F  M+   + P+ +T++ LL AC+  G +E G   + Y 
Sbjct: 321 PWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYI 380

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            + ++    ML       +VD+ S+ G  ++A     ++P    +  W A++ G   H +
Sbjct: 381 DRRRVSLSVMLGTN----LVDMYSKCGNIEKAIRVFKEIPEKNALT-WTAMISGLANHGH 435

Query: 425 VELG-EFAARRI-LALDPEDVSSYVMLS 450
            ++  ++  R I L L P++++   +LS
Sbjct: 436 ADVAIKYFQRMIELGLQPDEITFIGVLS 463



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 201 PHRNVVSWNAMIGGYS---QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
           P  +   +NA +   S     G     + L+  +LR    P+H T P  + A A +    
Sbjct: 79  PPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSAR-PDHLTFPFLLKACARLQERN 137

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
            G +     +      DVFV N+ + F A C SM ++  +FD    R++V+WN +I GY 
Sbjct: 138 YGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYV 197

Query: 318 QNGRGEEAIEFFERMRING-IRPNGVTLLGLL 348
           + G   EA+E F RM  +G + P+ VT++G++
Sbjct: 198 RRGVPREALEMFWRMVGDGAVTPDEVTMIGVV 229



 Score = 46.2 bits (108), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           M+ LL  C    +L     +H     + I+ ++ S+  +    + T+ V   S+      
Sbjct: 357 MVNLLSACSQLGALEMGMWVH-----HYIDRRRVSLSVM----LGTNLVDMYSKCGNIEK 407

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             +VF E+P+ N ++ T +I   A   H + AI  F RM+ L ++P E TF  V+ +   
Sbjct: 408 AIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCH 467

Query: 121 LEDLNLGKQLHA-WATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
              +  G++  +   +K  L+  +   S ++DL  +   ++EA
Sbjct: 468 AGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEA 510


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 253/454 (55%), Gaps = 44/454 (9%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     ++F  + + +VVS T +I  + +   + EA+ LF  M    I+     F S I 
Sbjct: 488 KLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAIS 547

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   ++ L+ G+Q+HA +   G   ++ +G+A++ LY +   + EA   F+         
Sbjct: 548 ACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFD--------- 598

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                                 ++  ++ VSWN+++ G++Q+G  EEA+N+F +M + GL
Sbjct: 599 ----------------------QIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGL 636

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             N  T   A+ AAANIA + +GK  H    K     +  V N+LI+ YAKCG+++D   
Sbjct: 637 EINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD--- 693

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
                     ++WN++I GY+Q+G G EA++ FE M+   + PN VT +G+L AC+H GL
Sbjct: 694 ----------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGL 743

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V++G SYF         + KPEHYAC+VDLL RSG    AK F+ ++P  P    W+ LL
Sbjct: 744 VDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLL 803

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C +H N+++GEFAA  +L L+P+D ++YV++SN  +V+GKWD     R+ MK++G+ +
Sbjct: 804 SACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKK 863

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
            PG SW+E+ + VH F  GD+NH   D IY  LR
Sbjct: 864 EPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLR 897



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 195/437 (44%), Gaps = 65/437 (14%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  S S   SS  Q+F  +   + VS  ++I   A+Q +   A+ LF +M L   +P  
Sbjct: 293 VTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDC 352

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  S++ +  ++  L  GKQ H++A K G+ S++ V  ++LDLY+K S I+ A   F  
Sbjct: 353 VTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF-- 410

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                       +C                                Y Q     ++  +F
Sbjct: 411 ------------LC--------------------------------YGQLDNLNKSFQIF 426

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M  EG+VPN  T P  +     + A  +G+  H   +K   + +V+V + LI  YAK 
Sbjct: 427 TQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKH 486

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G ++ +L +F +L E ++V+W A+I GY Q+ +  EA+  F+ M+  GI+ + +     +
Sbjct: 487 GKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAI 546

Query: 349 WACNHTGLVEKGYSYFSQAKL----EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
            AC     +++G    +Q+ L    +D  +        +V L +R G+ +EA    +D  
Sbjct: 547 SACAGIQALDQGRQIHAQSCLSGYSDDLSIGNA-----LVSLYARCGKVREAYA-AFDQI 600

Query: 405 FDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +      W +L+ G       E  L  FA      L   +++S+    +A+S A    N+
Sbjct: 601 YAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGL---EINSFT-FGSAVSAAA---NI 653

Query: 463 SNIRREMKEKGMTRVPG 479
           +N+R   +  GM R  G
Sbjct: 654 ANVRIGKQIHGMIRKTG 670



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 181/432 (41%), Gaps = 73/432 (16%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA-LE 122
           VFDE+P  ++     I   F  +        LF RML  N+   E  F  V+   +    
Sbjct: 119 VFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAV 178

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
                +Q+HA     G +S+ F+ + ++DLY K   +  A +VFE+              
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFEN-------------- 224

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            +  R+ VSW AMI G SQ G  EEA+ LF +++          
Sbjct: 225 -----------------LKARDSVSWVAMISGLSQNGYEEEAMLLFCQIV---------- 257

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A   +     GK  H   +K     + +V N+L++ Y++ G++  +  +F  ++
Sbjct: 258 ----LSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMS 313

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
           +R+ V++N++I G AQ G    A+  F++M ++  +P+ VT+  LL AC   G +  G  
Sbjct: 314 QRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ 373

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL--------YDLPFD----- 406
            +SY  +A +    +++      ++DL  +    K A EF          +  F      
Sbjct: 374 FHSYAIKAGMTSDIVVE----GSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQM 429

Query: 407 ------PGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKW 459
                 P    + ++L  C      +LGE    ++L    + +V    +L +  +  GK 
Sbjct: 430 QIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKL 489

Query: 460 DNVSNIRREMKE 471
           D+   I R +KE
Sbjct: 490 DHALKIFRRLKE 501



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 152/364 (41%), Gaps = 62/364 (17%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           SS  +VF+ +   + VS   +I   ++  + EEA+ LF ++              V+ + 
Sbjct: 216 SSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSAC 261

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           T +E    GKQLH    K G  S  +V +A++ LY +  ++  A ++F      + VSY 
Sbjct: 262 TKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYN 321

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           ++I GL ++     AL LF++M                         NL  +       P
Sbjct: 322 SLISGLAQQGYINRALALFKKM-------------------------NLDCQK------P 350

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  T+   + A A++ AL  GK FH+ A+K     D+ V  SL+  Y KC  ++ +   F
Sbjct: 351 DCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF 410

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
                         +C Y Q     ++ + F +M+I GI PN  T   +L  C   G  +
Sbjct: 411 --------------LC-YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATD 455

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            G    +Q  L+          + ++D+ ++ G+   A +    L  +  +  W A++ G
Sbjct: 456 LGEQIHTQV-LKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVS-WTAMIAG 513

Query: 419 CQIH 422
              H
Sbjct: 514 YTQH 517



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 18/219 (8%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VS  +   K    +  FD++   + VS  +++  FA+  ++EEA+ +F++M    +  + 
Sbjct: 581 VSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINS 640

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTFGS + ++  + ++ +GKQ+H    K G  S   V +A++ LY K  +I++       
Sbjct: 641 FTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD------- 693

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEA 224
                 +S+ +MI G  +     +ALKLF++M   +V    V++  ++   S  G  +E 
Sbjct: 694 ------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEG 747

Query: 225 VNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           ++ F  M     LVP      C +        L   K F
Sbjct: 748 ISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRF 786



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 122/324 (37%), Gaps = 40/324 (12%)

Query: 173 NVVSYTTMICGLLKRERFEDALKL----------------FQEMPHRNVVSWNAMIGGYS 216
           N  ++  ++ G L    F D LKL                F EMP R++  WN +   + 
Sbjct: 80  NSQTFLWLLEGCLNSRSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFI 139

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AANIAALGMGKSFHACAVKFLGKLDV 275
                     LF  ML + +  +       +   + N  +    +  HA  +    +   
Sbjct: 140 AERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESST 199

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           F+ N LI  Y K G +  +  VF+ L  R+ V+W A+I G +QNG  EEA+  F ++   
Sbjct: 200 FICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--- 256

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRF 393
                      +L AC      E G         +       E Y C  +V L SRSG  
Sbjct: 257 -----------VLSACTKVEFFEFGKQLHGLVLKQG---FSSETYVCNALVTLYSRSGNL 302

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGC--QIHSNVELGEFAARRILALDPEDVSSYVMLSN 451
             A++  + +     + +  +L+ G   Q + N  L  F    +    P+ V+   +LS 
Sbjct: 303 SSAEQIFHCMSQRDRVSY-NSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSA 361

Query: 452 ALSVAGKWDNVSNIRREMKEKGMT 475
             SV G   N         + GMT
Sbjct: 362 CASV-GALPNGKQFHSYAIKAGMT 384


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 254/447 (56%), Gaps = 4/447 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +   N V   T++  ++  +  E A+ L+ +ML  ++  + +TF  ++ + +AL  
Sbjct: 66  VFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSA 125

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
               +Q+HA   K G    V+  +++L +Y    +I+ A  +F      ++VS+  MI G
Sbjct: 126 FEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDG 185

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +K    + A K+FQ MP +NV+SW  MI G+ + G ++EA++L  +ML  G+ P+  TL
Sbjct: 186 YIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITL 245

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
            C++ A A + AL  GK  H    K   K+D  +G  L   Y KCG ME +LLVF KL +
Sbjct: 246 SCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEK 305

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           + +  W A+I G A +G+G EA+++F +M+  GI PN +T   +L AC+H GL E+G S 
Sbjct: 306 KCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSL 365

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F    +     +KP  EHY CMVDL+ R+G  KEA+EF+  +P  P    W ALL  CQ+
Sbjct: 366 FE--SMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQL 423

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + ELG+   + ++ LDP+    Y+ L++  + AG+W+ V  +R ++K +G+   PGCS
Sbjct: 424 HKHFELGKEIGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCS 483

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAV 508
            I +   VH F  GD +H    EIY +
Sbjct: 484 SITLNGVVHEFFAGDGSHPHIQEIYGM 510



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 162/369 (43%), Gaps = 37/369 (10%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLY--IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           Q+H    K G   N    S +L  Y  I+L ++     VF+   +PN V + TM+     
Sbjct: 28  QIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSN 87

Query: 187 RERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGL---VPN 239
               E AL L+ +M H +V     ++  ++   S     EE   +   +++ G    V  
Sbjct: 88  SNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYA 147

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            ++L      + NI      +S H    + L   D+   N +I  Y K G+++ +  +F 
Sbjct: 148 TNSLLRVYAISGNI------QSAHVLFNQ-LPTRDIVSWNIMIDGYIKFGNLDMAYKIFQ 200

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + E+N+++W  +I G+ + G  +EA+   ++M + GI+P+ +TL   L AC   G +E+
Sbjct: 201 AMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQ 260

Query: 360 G---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G   ++Y  + +++    + P     + D+  + G  ++A      L     +  W A++
Sbjct: 261 GKWIHTYIEKNEIK----IDPVLGCVLTDMYVKCGEMEKALLVFSKLE-KKCVCAWTAII 315

Query: 417 GGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG----------KWDNVSN 464
           GG  IH      L  F   +   ++P  ++   +L+ A S AG             +V N
Sbjct: 316 GGLAIHGKGREALDWFTQMQKAGINPNSITFTAILT-ACSHAGLTEEGKSLFESMSSVYN 374

Query: 465 IRREMKEKG 473
           I+  M+  G
Sbjct: 375 IKPSMEHYG 383



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 4/174 (2%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +++F  +P+ NV+S TT+I  F +   ++EA+ L  +ML+  I+P   T    + +   L
Sbjct: 196 YKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGL 255

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  GK +H +  K  ++ +  +G  + D+Y+K   +E+A  VF       V ++T +I
Sbjct: 256 GALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAII 315

Query: 182 CGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            GL    +  +AL  F +M     + N +++ A++   S  G  EE  +LF  M
Sbjct: 316 GGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESM 369


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 269/479 (56%), Gaps = 37/479 (7%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+    V+  S+ +  +   ++FD   D N ++ + ++  +++     EA+ LFSRM   
Sbjct: 257 ALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSA 316

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            I+PSE+T   V+ + + +  L  GKQLH++  K+G + ++F  +A++D+Y K   +   
Sbjct: 317 GIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLA-- 374

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                                        DA K F  +  R+V  W ++I GY Q   NE
Sbjct: 375 -----------------------------DARKGFDCLQERDVALWTSLISGYVQNSDNE 405

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+ L+  M   G++PN  T+   + A +++A L +GK  H   +K    L+V +G++L 
Sbjct: 406 EALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALS 465

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + Y+KCGS+ED  LVF +   +++V+WNA+I G + NG+G+EA+E FE M   G+ P+ V
Sbjct: 466 TMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDV 525

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           T + ++ AC+H G VE+G+ YF+    +   DP   K +HYACMVDLLSR+G+ KEAKEF
Sbjct: 526 TFVNIISACSHKGFVERGWFYFNMMSDQIGLDP---KVDHYACMVDLLSRAGQLKEAKEF 582

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           +     D G+  W+ LL  C+ H   ELG +A  +++AL   + S+YV LS   +  G+ 
Sbjct: 583 IESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRM 642

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            +V  + + M+  G+++  GCSWIE+K++ HVFV GD  H M +E   ++   + Q+ E
Sbjct: 643 RDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEETKDLVCLVSRQMIE 701



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 209/435 (48%), Gaps = 60/435 (13%)

Query: 44  IRTDSVSCGSESD----------KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA- 92
           IRT + +C   ++          K +  H +F+ +   +VVS  ++I  +++      + 
Sbjct: 41  IRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSY 100

Query: 93  --IYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150
             + LF  M   +I P+ +T   +  + ++L+   +G+Q HA   K+    +++V ++++
Sbjct: 101 TVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLV 160

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
            +Y K                           GL+     ED LK+F  MP RN  +W+ 
Sbjct: 161 GMYCK--------------------------AGLV-----EDGLKVFAYMPERNTYTWST 189

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHS--TLPCAIIAAANIAALGMGKSFHACAVK 268
           M+ GY+  GR EEA+ +F   LRE    + S       + + A    +G+G+  H   +K
Sbjct: 190 MVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIK 249

Query: 269 --FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
              LG   V + N+L++ Y+KC S+ ++  +FD   +RN +TW+A++ GY+QNG   EA+
Sbjct: 250 NGLLGF--VALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAV 307

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACM 383
           + F RM   GI+P+  T++G+L AC+    +E+G   +S+  +   E            +
Sbjct: 308 KLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFAT----TAL 363

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI--LALDPE 441
           VD+ +++G   +A++  +D   +  +  W +L+ G   +S+ E      RR+    + P 
Sbjct: 364 VDMYAKAGCLADARKG-FDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPN 422

Query: 442 DVSSYVMLSNALSVA 456
           D +   +L    S+A
Sbjct: 423 DPTMASVLKACSSLA 437



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 197/434 (45%), Gaps = 70/434 (16%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR--PSEFTFGSVIPSSTA 120
           +VF  +P+ N  + +T++  +A +   EEAI +F+  L        S++ F +V+ S  A
Sbjct: 174 KVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAA 233

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
              + LG+Q+H    K GL   V + +A++ +Y K  S+ EA ++F+ + +         
Sbjct: 234 TIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGD--------- 284

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                                 RN ++W+AM+ GYSQ G + EAV LF  M   G+ P+ 
Sbjct: 285 ----------------------RNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSE 322

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A ++I  L  GK  H+  +K   +  +F   +L+  YAK G + D+   FD 
Sbjct: 323 YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDC 382

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN-------- 352
           L ER++  W ++I GY QN   EEA+  + RM+  GI PN  T+  +L AC+        
Sbjct: 383 LQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELG 442

Query: 353 ---HTGLVEKGYS------------YFSQAKLEDPGML---KPEH----YACMVDLLSRS 390
              H   ++ G+             Y     LED  ++    P      +  M+  LS +
Sbjct: 443 KQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHN 502

Query: 391 GRFKEAKEFLYDL---PFDPGIGFWKALLGGCQIHSNVELGEFAARRI---LALDPEDVS 444
           G+  EA E   ++     +P    +  ++  C     VE G F    +   + LDP+ V 
Sbjct: 503 GQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPK-VD 561

Query: 445 SYVMLSNALSVAGK 458
            Y  + + LS AG+
Sbjct: 562 HYACMVDLLSRAGQ 575



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L P+ STL   +   +    L  G++ H   ++      +   N L++FYAKCG +  + 
Sbjct: 10  LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAH 69

Query: 296 LVFDKLTERNIVTWNAVICGYAQNG---RGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            +F+ +  +++V+WN++I GY+QNG        ++ F  MR   I PN  TL G+  A
Sbjct: 70  SIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/444 (36%), Positives = 250/444 (56%), Gaps = 31/444 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD+   +++V  T +I  +        A+ +F  +L   +R +  T  SV+P+   L 
Sbjct: 405 KIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLA 464

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LGK+LH    K G   + +VGSAI+D+Y K                          C
Sbjct: 465 ALTLGKELHGHILKNGHGGSCYVGSAIMDMYAK--------------------------C 498

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     R + A + F  +  ++ V WN+MI   SQ G+ EEA++LF +M   G   +  +
Sbjct: 499 G-----RLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVS 553

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +  A+ A AN+ AL  GK  HA  ++   + D+F  ++LI  Y+KCG+++ +  VFD + 
Sbjct: 554 ISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTME 613

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+N V+WN++I  Y  +GR ++++  F  M  +GI+P+ VT L ++ AC H G V++G  
Sbjct: 614 EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIH 673

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF     E   M + EHYACMVDL  R+GR  EA   +  +PF P  G W  LLG C++H
Sbjct: 674 YFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLH 733

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            NVEL E A+R +  LDP++   YV+LSN  + AG+W++V  IR  MKE+G+ +VPGCSW
Sbjct: 734 GNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSW 793

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIY 506
           I++ +  H+FV  DR+H  + +IY
Sbjct: 794 IDVNNTTHMFVAADRSHPQSSQIY 817



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 31/270 (11%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  F     ++ A+  + +ML     P ++TF  VI +   L  + LG+ +H     +G
Sbjct: 118 MIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMG 177

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
            + +VFVGS+++  Y +   I                                DA  LF 
Sbjct: 178 FELDVFVGSSLIKFYSENGCIH-------------------------------DARYLFD 206

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            MP ++ V WN M+ GY + G  + A  +F+EM R    PN  T  C +   A+   +  
Sbjct: 207 RMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINF 266

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G   H   V    ++D  V N+L++ YAKCG + D+  +FD + + ++VTWN +I GY Q
Sbjct: 267 GSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQ 326

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           NG  +EA   F  M    ++P+ +T    L
Sbjct: 327 NGFMDEASCLFHEMISARMKPDSITFSSFL 356



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 160/380 (42%), Gaps = 45/380 (11%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           SE+        +FD +P  + V    ++  + K   ++ A  +F  M      P+  TF 
Sbjct: 193 SENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFA 252

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+    +   +N G QLH      GL+ +  V + +L +Y K                 
Sbjct: 253 CVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAK----------------- 295

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG L      DA +LF  MP  ++V+WN MI GY Q G  +EA  LF EM+
Sbjct: 296 ---------CGHLF-----DARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMI 341

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              + P+  T    +   +  A L  GK  H   ++    LDVF+ ++LI  Y KC  +E
Sbjct: 342 SARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVE 401

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  +FD+ T  +IV   A+I GY  NG    A+E F  +    +R N VTL  +L AC 
Sbjct: 402 MARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPAC- 460

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEH------YACMVDLLSRSGRFKEAKEFLYDLPFD 406
                  G +  +  K     +LK  H       + ++D+ ++ GR   A +    +  D
Sbjct: 461 ------AGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS-D 513

Query: 407 PGIGFWKALLGGCQIHSNVE 426
                W +++  C  +   E
Sbjct: 514 KDAVCWNSMITSCSQNGKPE 533



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 33/240 (13%)

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ + T    L+ G+Q HA     G+  N  +G+ +L +Y+                  
Sbjct: 51  SILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYV------------------ 92

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                   +CG      F DA  +F ++       WN MI G++  G+ + A+  + +ML
Sbjct: 93  --------LCG-----AFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKML 139

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSM 291
             G +P+  T P  I A   + ++ +G+  H   ++F+G +LDVFVG+SLI FY++ G +
Sbjct: 140 GCGTLPDKYTFPYVIKACGGLNSVALGRVVHD-KIQFMGFELDVFVGSSLIKFYSENGCI 198

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            D+  +FD++  ++ V WN ++ GY +NG  + A   F  MR     PN VT   +L  C
Sbjct: 199 HDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVC 258


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/451 (36%), Positives = 248/451 (54%), Gaps = 32/451 (7%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M+   + P+ FTF S++ + + + +L  G+ +H    K G  S+VFV +A++D Y     
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS-- 216
           I EA RVF++    +V ++TTMI    +      A +LF EMP RN  SWNAMI GYS  
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 120

Query: 217 -----------------------------QTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                                        Q  +  EA+ +F EM   G+ P+  T+   I
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATII 180

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A A++ AL +GK  H  A++    LDV++G++LI  YAKCGS++ SL+VF KL ++N+ 
Sbjct: 181 SACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLF 240

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
            WN++I G A +G  EEA+  F RM+   I+PNGVT + +L AC H GLVE+G   F   
Sbjct: 241 CWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSM 300

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
             +     + EHY CMVDLL ++G  ++A E +  +  +P    W ALLGGC++H N+++
Sbjct: 301 SRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKI 360

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV-PGCSWIEIK 486
            + A      L+P +   Y +L N  +   +W  V+NIR  MKE G+ +  PG SWIE+ 
Sbjct: 361 AQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMD 420

Query: 487 SKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            K+H F   D++H  +DEIY +L     Q++
Sbjct: 421 RKIHQFAASDKSHLASDEIYTLLVELDGQLK 451



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 124/261 (47%), Gaps = 39/261 (14%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S   +F ++P+ +++S TT+I  +++   + EA+ +F+ M    I P E T  ++I +  
Sbjct: 125 SAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACA 184

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            L  L+LGK++H +A ++G   +V++GSA++D+Y K  S++++  VF      N+  + +
Sbjct: 185 HLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNS 244

Query: 180 MICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           +I GL      E+AL +F  M       N V++ +++G  +  G  EE    F+ M R+ 
Sbjct: 245 IIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDF 304

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
            +P                        + C V  LG               K G +ED+L
Sbjct: 305 SIPPEI-------------------EHYGCMVDLLG---------------KAGLLEDAL 330

Query: 296 -LVFDKLTERNIVTWNAVICG 315
            LV     E N V W A++ G
Sbjct: 331 ELVRSMRMEPNSVIWGALLGG 351


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/450 (35%), Positives = 254/450 (56%), Gaps = 31/450 (6%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           + +F  + + +VV+  ++I  F +   Y+EA+  F  M    ++P      S+I + T L
Sbjct: 397 NSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGL 456

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           E ++LG  +H +  K GLQ +VFV S++LD+Y K    E A  +F D             
Sbjct: 457 EKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSD------------- 503

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                             MP +N+V+WN++I  Y +    + ++NLF ++LR  L P+  
Sbjct: 504 ------------------MPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSV 545

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           +    + A +++AAL  GKS H   V+     D+ V N+LI  Y KCG ++ +  +F+++
Sbjct: 546 SFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERI 605

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           +E+N+V WN++I GY  +G   +AIE F+ MR +GI+P+ VT L LL +CNH+GL+E+G 
Sbjct: 606 SEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGL 665

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F   K++     + EHY  +VDL  R+G   +A  F+ ++P +P    W +LL  C+I
Sbjct: 666 HLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKI 725

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N+ELGE  A ++L ++P   S+YV L N    A  WD  +N+R  MKEKG+ + PGCS
Sbjct: 726 HLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCS 785

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
           WIE+++KV VF +GD +  +  EIY  L S
Sbjct: 786 WIEVRNKVDVFYSGDCSSPITTEIYDTLSS 815



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 195/417 (46%), Gaps = 41/417 (9%)

Query: 40  ETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           + P + T  ++   +     S  +VF+EVPD  +     +I  +    +  +A+ ++ +M
Sbjct: 274 DDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQM 333

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
            L  +    FT  +V+ SS+     +LG+ +H    K  LQS++ + SA+L +Y K    
Sbjct: 334 KLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSK---- 389

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
                 F D++  N                      +F  M  R+VV+W ++I G+ Q  
Sbjct: 390 ------FGDSNYAN---------------------SIFSTMKERDVVAWGSVISGFCQNR 422

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
           + +EA++ F  M  + + P+   +   I A   +  + +G + H   +K   +LDVFV +
Sbjct: 423 KYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVAS 482

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           SL+  Y+K G  E +  +F  +  +N+V WN++I  Y +N   + +I  F ++  N + P
Sbjct: 483 SLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYP 542

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQ-AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           + V+   +L A +    + KG S      +L  P  L+ E+   ++D+  + G  K A+ 
Sbjct: 543 DSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVEN--TLIDMYIKCGLLKYAQH 600

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSN----VELGEFAARRILALDPEDVSSYVMLSN 451
            +++   +  +  W +++GG   H      +EL  F   R   + P+DV+   +LS+
Sbjct: 601 -IFERISEKNLVAWNSMIGGYGSHGECSKAIEL--FDEMRSSGIKPDDVTFLSLLSS 654



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 149/337 (44%), Gaps = 59/337 (17%)

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           I    +Q  Y EA+ L+++  +   R   FT+ S++ +  +L +L  GK +H+     GL
Sbjct: 28  IKSLVQQRQYIEALKLYTKSPVYTTR---FTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 140 QSNVFVGSA------------------------------------ILDLYIKLSSIEEAT 163
            S+ ++ S+                                    I+D Y +   +EE  
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144

Query: 164 RVFEDTHNP--------------NVVSY-----TTMICGLLKRERFEDALKLFQEMPHR- 203
             F    +               N++++     T +I    K  R  +A  LF+++  R 
Sbjct: 145 VQFGRMQSSGYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRS 204

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           N+V+WN MIGG+ + G  E ++  ++    E +    S+  C + A      +  GK  H
Sbjct: 205 NIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVH 264

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
             A+K   + D +V  SL++ Y KC  +E +  VF+++ ++ I  WNA+I  Y  NG   
Sbjct: 265 CDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAY 324

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +A+  +++M++  +  +  T+L +L + +  GL + G
Sbjct: 325 DALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLG 361



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 192/426 (45%), Gaps = 49/426 (11%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFS 97
           LET  I T    CG  ++       +F ++ D  N+V+   +IG F +   +E ++  + 
Sbjct: 176 LETALIDT-YFKCGRPTE----ARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYL 230

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
                N++    +F   + +    E ++ GKQ+H  A KVG + + +V +++L +Y K  
Sbjct: 231 LAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQ 290

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
            IE A +V                               F E+P + +  WNA+I  Y  
Sbjct: 291 MIESAEKV-------------------------------FNEVPDKEIELWNALISAYVG 319

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
            G   +A+ ++ +M    ++ +  T+   + +++      +G+  H   VK   +  + +
Sbjct: 320 NGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITI 379

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            ++L++ Y+K G    +  +F  + ER++V W +VI G+ QN + +EA++FF  M  + +
Sbjct: 380 QSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLV 439

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +P+   +  ++ AC     V+ G   + +  ++ L+    L     + ++D+ S+ G  +
Sbjct: 440 KPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQ----LDVFVASSLLDMYSKFGFPE 495

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSN---VELGEFAARRILALDPEDVSSYVMLSN 451
            A     D+P    +  W +++  C   +N   + +  F+      L P+ VS   +L+ 
Sbjct: 496 RAGNIFSDMPLKNLVA-WNSII-SCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAA 553

Query: 452 ALSVAG 457
             SVA 
Sbjct: 554 ISSVAA 559



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 26/182 (14%)

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T P  + A A+++ L  GK+ H+  +      D ++ +SLI+ Y KCG+  D++ VFD+L
Sbjct: 55  TYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQL 114

Query: 302 TER-----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            +      ++  WN++I GY + G+ EE +  F RM+ +G +                  
Sbjct: 115 PKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKEG---------------- 158

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
            ++ +SY  +  L       P     ++D   + GR  EA+     L     I  W  ++
Sbjct: 159 -KQIHSYIVRNMLN----FDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMI 213

Query: 417 GG 418
           GG
Sbjct: 214 GG 215


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/521 (32%), Positives = 287/521 (55%), Gaps = 12/521 (2%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFD 66
           +C +S  L K S+L + A     ET K  + +   P+  T  ++    +D   +  ++ D
Sbjct: 186 VCCASSPLVKSSQLMASARKVFDETPKNQIYE---PSW-TTMIAGYVRNDDLVAARELLD 241

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED--- 123
            +     V+   +I  + ++  YEEA   F RM  + I+  E+T+ S+I +  +  +   
Sbjct: 242 GLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMG 301

Query: 124 -LNLGKQLHAWATKVGLQSN----VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             N G+Q+H +  +  ++ +    + V +A++  Y K   + EA RVF+     +++S+ 
Sbjct: 302 MFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWN 361

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
            ++ G +  +R E+A  +F EMP RNV++W  MI G +Q G  EE + LF +M  EGL P
Sbjct: 362 AVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEP 421

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
                  AI A + + +L  G+  H+  ++      +  GN+LI+ Y++CG +E +  VF
Sbjct: 422 CDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVF 481

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
             +   + V+WNA+I   AQ+G G +AIE FE+M    I P+ +T L +L ACNH GL++
Sbjct: 482 LTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIK 541

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +G  YF             +HYA ++DLL R+G F +A+  +  +PF+ G   W+ALL G
Sbjct: 542 EGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAG 601

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+IH N+ELG  AA R+L L P    +Y++LSN  +  G+WD V+ +R  M+E+G+ + P
Sbjct: 602 CRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEP 661

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           GCSW+E+++ VHVF+  D  H     +Y  L+    ++++ 
Sbjct: 662 GCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKL 702



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 171/405 (42%), Gaps = 64/405 (15%)

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           + + +HA     G + N F+ + ++++Y K S+I  A ++F+    P++V+ TT++    
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 186 KRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                + A +LF   P   R+ VS+NAMI  YS       A+NLF++M R G +P+  T 
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDV-FVGNSLISFYAKCGS---------MED 293
              + A + IA          C V  LG L +  V N+L+S Y  C S         M  
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 294 SLLVFDKLTERNI---------------------------------VTWNAVICGYAQNG 320
           +  VFD+  +  I                                 V WNA+I GY + G
Sbjct: 203 ARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRG 262

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK---- 376
             EEA + F RM   GI+ +  T   L+ AC   G   +    F+  +     +L+    
Sbjct: 263 LYEEAFDTFRRMHSMGIQEDEYTYTSLISAC---GSCNEKMGMFNCGRQVHGYILRTVVE 319

Query: 377 PEHY------ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
           P H+        ++   ++  R  EA+     +P    I  W A+L G      +E    
Sbjct: 320 PSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIIS-WNAVLSGYVNAQRIE---- 374

Query: 431 AARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
            A  I +  PE +V ++ ++ + L+  G  +    +  +MK +G+
Sbjct: 375 EANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGL 419


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/507 (34%), Positives = 277/507 (54%), Gaps = 13/507 (2%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           +L +  +LH+ A    ++  +A   +L+            + SD+      +    PD  
Sbjct: 47  TLRRTGELHAAAVRAGVDGDRAVGFRLQRAY---------AASDRLDLTVTLLRLTPDPT 97

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
            V  T+ I   + +  +  A+ L S ML   + P+  T  S +P   A   L LG+ LHA
Sbjct: 98  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLP---ACHGLALGRALHA 154

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
           +A K+ L  + +V +A+L +Y +    + A  +F++  +P+VV  T M+    K    +D
Sbjct: 155 YAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDD 214

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A +LF  MP ++ + WNAMI GY+Q GR  EA+ LF  MLR G+ P+   +  A+ A A 
Sbjct: 215 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 274

Query: 253 IAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +     G+  H+        +L+  VG +LI  Y KCGS+ED++ VF+ + +++IV WNA
Sbjct: 275 LGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNA 334

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I GYA +G   +A+E F ++R  G+ P  +T +GLL AC+H+GLV++G+ +F   + E 
Sbjct: 335 MINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEY 394

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
             + K EHY CMVDLL R+G  +EA   +  +   P    W +LL  C++H N+ LG+  
Sbjct: 395 AIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQI 454

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A  ++A    +   Y++LSN  +  G W+ V+ +R  MK  G+ + PGCS IE+  KV+ 
Sbjct: 455 ADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYE 514

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           FV GD +H   DEIYA+L      ++E
Sbjct: 515 FVAGDMSHPRTDEIYAMLEKMNGIVKE 541


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/507 (34%), Positives = 277/507 (54%), Gaps = 13/507 (2%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           +L +  +LH+ A    ++  +A   +L+            + SD+      +    PD  
Sbjct: 46  TLRRTGELHAAAVRAGVDGDRAVGFRLQRAY---------AASDRLDLTVTLLRLTPDPT 96

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
            V  T+ I   + +  +  A+ L S ML   + P+  T  S +P   A   L LG+ LHA
Sbjct: 97  TVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLP---ACHGLALGRALHA 153

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
           +A K+ L  + +V +A+L +Y +    + A  +F++  +P+VV  T M+    K    +D
Sbjct: 154 YAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDD 213

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A +LF  MP ++ + WNAMI GY+Q GR  EA+ LF  MLR G+ P+   +  A+ A A 
Sbjct: 214 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 273

Query: 253 IAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +     G+  H+        +L+  VG +LI  Y KCGS+ED++ VF+ + +++IV WNA
Sbjct: 274 LGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNA 333

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I GYA +G   +A+E F ++R  G+ P  +T +GLL AC+H+GLV++G+ +F   + E 
Sbjct: 334 MINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEY 393

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
             + K EHY CMVDLL R+G  +EA   +  +   P    W +LL  C++H N+ LG+  
Sbjct: 394 AIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQI 453

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A  ++A    +   Y++LSN  +  G W+ V+ +R  MK  G+ + PGCS IE+  KV+ 
Sbjct: 454 ADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYE 513

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           FV GD +H   DEIYA+L      ++E
Sbjct: 514 FVAGDMSHPRTDEIYAMLEKMNGIVKE 540


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 169/452 (37%), Positives = 261/452 (57%), Gaps = 33/452 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +  ++FDE+P  +VVS   +I  +A+  +Y+EA+ LF  M+  N+RP E T  +V+ +  
Sbjct: 218 NAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACA 277

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               + LG+Q+H W    G  SN+ + +A++DLY K   +E A                 
Sbjct: 278 QSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETA----------------- 320

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CGL            F+ +P+++V+SWN +IGGY+     +EA+ LF EMLR G  PN
Sbjct: 321 --CGL------------FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLV 297
             T+   + A A++ A+ +G+  H    K L  +     +  SLI  YAKCG +E +  V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +  +++ +WNA+I G+A +GR + + + F RMR  GI+P+ +T +GLL AC+H+G++
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGML 486

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + G   F     +     K EHY CM+DLL  SG FKEA+E +  +  +P    W +LL 
Sbjct: 487 DLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLK 546

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H NVELGE  A  ++ ++PE+  SYV+LSN  + AG+W+ V+  R  + +KGM +V
Sbjct: 547 ACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKV 606

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           PGCS IEI S VH F+ GD+ H  N EIY +L
Sbjct: 607 PGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 221/411 (53%), Gaps = 5/411 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF  + + N++   T+    A       A+ L+  M+ L + P+ +TF  V+ S    + 
Sbjct: 90  VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+H    K+G   +++V ++++ +Y++   +E+A +VF+ + + +VVSYT +I G
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R   E+A KLF E+P ++VVSWNAMI GY++TG  +EA+ LF +M++  + P+ ST+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A   ++ +G+  H          ++ + N+LI  Y+KCG +E +  +F++L  
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H G ++ G   
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 364 FSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                    G+         ++D+ ++ G  + A + +++      +  W A++ G  +H
Sbjct: 390 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ-VFNSILHKSLSSWNAMIFGFAMH 448

Query: 423 --SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
             ++     F+  R + + P+D+ ++V L +A S +G  D   +I R M +
Sbjct: 449 GRADASFDLFSRMRKIGIQPDDI-TFVGLLSACSHSGMLDLGRHIFRTMTQ 498



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 123/260 (47%), Gaps = 39/260 (15%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+ +   N++ WN M  G++ +     A+ L++ M+  GL+PN  T P  + + A 
Sbjct: 87  AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------- 304
             A   G+  H   +K    LD++V  SLIS Y + G +ED+  VFDK   R        
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206

Query: 305 -----------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                  ++V+WNA+I GYA+ G  +EA+E F+ M    +RP+ 
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM---LKPEHYACMVDLLSRSGRFKEAKE 398
            T++ ++ AC  +G +E G        ++D G    LK  +   ++DL S+ G  + A  
Sbjct: 267 STMVTVVSACAQSGSIELGRQV--HLWIDDHGFGSNLKIVN--ALIDLYSKCGELETACG 322

Query: 399 FLYDLPFDPGIGFWKALLGG 418
               LP+   I  W  L+GG
Sbjct: 323 LFERLPYKDVIS-WNTLIGG 341



 Score = 40.4 bits (93), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 45/88 (51%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           ++RT  +   ++     + HQVF+ +   ++ S   +I  FA     + +  LFSRM  +
Sbjct: 405 SLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI 464

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            I+P + TF  ++ + +    L+LG+ +
Sbjct: 465 GIQPDDITFVGLLSACSHSGMLDLGRHI 492


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 172/460 (37%), Positives = 258/460 (56%), Gaps = 40/460 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D    V +VFDE P  ++VS TT+I  F K   Y  A+  F  M  L +R    T
Sbjct: 159 CGSIHD----VQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRT 214

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
              V+ + + L DLNLG+++H++    + ++++VFVG+A+LD+Y+K   +  A +VF+  
Sbjct: 215 LVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFD-- 272

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                                        EMP +NVV+WNAMI G +  GR  EA++ F 
Sbjct: 273 -----------------------------EMPVKNVVTWNAMISGLAYQGRYREALDTFR 303

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            M  +G+ P+  TL   + + AN+  L +GK  HA   +     D FVGN+L+  YAKCG
Sbjct: 304 MMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCG 363

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           S++++  VF+ +  R++ ++ A+I G A +G    A + F  M   GI PN VT LGLL 
Sbjct: 364 SIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLM 423

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           AC+H GLV +G  YF Q  + D   L+P  EHY CM+DLL R+G  KEA+E ++ +   P
Sbjct: 424 ACSHGGLVAEGKKYFFQ--MSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRP 481

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
            +    ALLG C+IH NV++GE   +++  LDP++  +Y++++N  S   +W +   IR+
Sbjct: 482 DVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRK 541

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
            MK K M + PGCS IE+   VH F  GD++H  +  I A
Sbjct: 542 TMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVIIA 581



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 140/268 (52%), Gaps = 33/268 (12%)

Query: 95  LFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS-NVFVGSAILDLY 153
             + ML++ + P  FT   V+ +   ++ +  G+Q+HA + K G+   NV+V + ++ LY
Sbjct: 97  FLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLY 156

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
                                      +CG        D  K+F E PHR++VSW  +I 
Sbjct: 157 --------------------------SVCG-----SIHDVQKVFDECPHRDLVSWTTLIQ 185

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-K 272
            +++ G    AV  F+EM    L  +  TL   + A +N+  L +G+  H+    ++  K
Sbjct: 186 AFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMK 245

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            DVFVGN+L+  Y KC  +  +  VFD++  +N+VTWNA+I G A  GR  EA++ F  M
Sbjct: 246 ADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMM 305

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +  G++P+ VTL+G+L +C + G++E G
Sbjct: 306 QDKGVKPDEVTLVGVLNSCANLGVLEIG 333



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 162/396 (40%), Gaps = 74/396 (18%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ +L  C +   LN   K+HS   +Y+    KA V      A+    + C    D  +S
Sbjct: 215 LVVVLSACSNLGDLNLGQKVHSYIRHYI--DMKADV--FVGNALLDMYLKC----DDLNS 266

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
            ++VFDE+P  NVV+   +I   A Q  Y EA+  F  M    ++P E T   V+ S   
Sbjct: 267 AYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCAN 326

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L  L +GK +HA+  +  + ++ FVG+A+LD+Y K  SI+EA RVFE     +V SYT M
Sbjct: 327 LGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAM 386

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I GL                               +  G    A  +F EM R G+ PN 
Sbjct: 387 IFGL-------------------------------ALHGEANWAFQVFSEMFRVGIEPNE 415

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T    ++A ++   +  GK +      F    D +        Y   G M D L     
Sbjct: 416 VTFLGLLMACSHGGLVAEGKKY------FFQMSDKYKLRPQAEHY---GCMIDLL----- 461

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
                            + G  +EA E   +M    IRP+      LL AC   G V+ G
Sbjct: 462 ----------------GRAGLVKEAEEIIHKME---IRPDVFACGALLGACRIHGNVDIG 502

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
            S   +    DP   +   Y  M +L S   R+K+A
Sbjct: 503 ESVMQKLTELDPD--EEGTYILMTNLYSSVHRWKDA 536



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 124/263 (47%), Gaps = 18/263 (6%)

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
           NA+I   S+   N   +    EML  GL P+  T+P  + A A I  +  G+  HA ++K
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 269 F-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
             +   +V+V N+L+  Y+ CGS+ D   VFD+   R++V+W  +I  + + G    A+E
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYSYFSQAKLEDPGMLKPEHYA--C 382
            F  M    +R +G TL+ +L AC++ G   L +K +SY           +K + +    
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYI-----DMKADVFVGNA 253

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDP 440
           ++D+  +      A +   ++P    +  W A++ G          L  F   +   + P
Sbjct: 254 LLDMYLKCDDLNSAYKVFDEMPV-KNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKP 312

Query: 441 EDVSSYVMLSNALSVA----GKW 459
           ++V+   +L++  ++     GKW
Sbjct: 313 DEVTLVGVLNSCANLGVLEIGKW 335


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 268/467 (57%), Gaps = 10/467 (2%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +   VF+EV     V    +I  +       EA  LF RM+L  +   EFTF SV+ +  
Sbjct: 246 AARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACA 305

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVF------VGSAILDLYIKLSSIEEATRVFEDTHNPN 173
                  GK +H   T+  LQ N        V +A++ LY K  +I  A R+F++  + +
Sbjct: 306 NAGFFAHGKSVHGQITR--LQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKD 363

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS+ T++ G ++    + A+++F+EMP++N +SW  M+ GY   G +E+A+ LF  M  
Sbjct: 364 VVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRA 423

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           E + P   T   AI A   + +L  GK  H   V+   +     GN+LI+ YA+CG++++
Sbjct: 424 EDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKE 483

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + L+F  +   + V+WNA+I    Q+G G EA+E F+RM   GI P+ ++ L +L ACNH
Sbjct: 484 ANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNH 543

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           +GLV++G+ YF   K  D G++  E HY  ++DLL R+GR  EA++ +  +PF+P    W
Sbjct: 544 SGLVDEGFQYFESMK-RDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIW 602

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           +A+L GC+   ++ELG  AA ++  + P+   +Y++LSN  S AG+W + + +R+ M+++
Sbjct: 603 EAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDR 662

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           G+ + PGCSWIE  +KVHVFV GD  H    ++Y  L     ++R+ 
Sbjct: 663 GVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKL 709



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 184/372 (49%), Gaps = 21/372 (5%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDL--NVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           P   T  V+  + + +  +    FD VP    + V    +I  +A+  H   A+ +F  +
Sbjct: 88  PVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 100 LLL-NIRPSEFTFGSVIPSSTALEDLNLGK--QLHAWATKVGLQSNVFVGSAILDLYIKL 156
           L   ++RP +++F +++ ++  L ++++    QL     K G    + V +A++ LY+K 
Sbjct: 148 LASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKC 207

Query: 157 SSIE---EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
            ++E   +A +V ++  + + +++TTM+ G ++R     A  +F+E+  +  V WNAMI 
Sbjct: 208 EALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMIS 267

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK----F 269
           GY  +G   EA  LF  M+ E +  +  T    + A AN      GKS H    +    F
Sbjct: 268 GYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNF 327

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
           + +  + V N+L++ Y+KCG++  +  +FD +  +++V+WN ++ GY ++   ++A+E F
Sbjct: 328 VPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVF 387

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLL 387
           E M       N ++ + ++    H G  E     F++ + ED   +KP    YA  +   
Sbjct: 388 EEMPYK----NELSWMVMVSGYVHGGFSEDALKLFNRMRAED---VKPCDYTYAGAISAC 440

Query: 388 SRSGRFKEAKEF 399
              G  K  K+ 
Sbjct: 441 GELGSLKHGKQL 452



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 97/193 (50%), Gaps = 9/193 (4%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ES       +VF+E+P  N +S   ++  +      E+A+ LF+RM   +++P ++T+  
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAG 435

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            I +   L  L  GKQLH    ++G + +   G+A++ +Y +  +++EA  +F    N +
Sbjct: 436 AISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNID 495

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEM------PHRNVVSWNAMIGGYSQTGRNEEAVNL 227
            VS+  MI  L +     +AL+LF  M      P R  +S+  ++   + +G  +E    
Sbjct: 496 SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDR--ISFLTVLTACNHSGLVDEGFQY 553

Query: 228 FIEMLRE-GLVPN 239
           F  M R+ G++P 
Sbjct: 554 FESMKRDFGIIPG 566


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 264/460 (57%), Gaps = 31/460 (6%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            S  HQ+F ++ + N+ +  T+I  +A+  +   A+ L+ +M +  I P   T+  ++ +
Sbjct: 90  MSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKA 149

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L D+  G+++H+ A + G +S VFV + ++ +Y                        
Sbjct: 150 IAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAA---------------------- 187

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               CG       E A KLF+ M  RN+V+WN++I GY+  GR  EA+ LF EM   G+ 
Sbjct: 188 ----CG-----HAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVE 238

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T+   + A A + AL +G+  H   VK     ++  GN+L+  YAKCGS+  +  V
Sbjct: 239 PDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKV 298

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD++ E+++V+W ++I G A NG G+EA+E F+ +   G+ P+ +T +G+L+AC+H G+V
Sbjct: 299 FDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMV 358

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           ++G+ YF + K E   + K EHY CMVDLL R+G  K+A EF+ ++P  P    W+ LLG
Sbjct: 359 DEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLG 418

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C IH ++ LGE A  ++L L+P+    YV+LSN  +   +W +V  +RR M  +G+ + 
Sbjct: 419 ACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKT 478

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           PG S +E+++++H FV GDR+H   +EIY  L   T+ ++
Sbjct: 479 PGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLK 518


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/437 (36%), Positives = 253/437 (57%), Gaps = 35/437 (8%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+ +P  +V+  + +I R+A+ +  E+A  LF R++  ++ P+E++  SV+ + T +  L
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 380

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           + GKQ+H  A K+G +S++FVG+A++D Y K + ++ +                      
Sbjct: 381 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSS---------------------- 418

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                    LK+F  +   N VSWN ++ G+SQ+G  EEA+++F EM    +     T  
Sbjct: 419 ---------LKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYS 469

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + A A+ A++      H    K     D  +GNSLI  YAKCG + D+L VF  L ER
Sbjct: 470 SVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMER 529

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           +I++WNA+I GYA +G+  +A+E F+RM  + +  N +T + LL  C+ TGLV  G S F
Sbjct: 530 DIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLF 589

Query: 365 SQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              ++ D G +KP  EHY C+V LL R+GR  +A +F+ D+P  P    W+ALL  C IH
Sbjct: 590 DSMRI-DHG-IKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH 647

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            NV LG F+A +IL ++P+D ++YV+LSN  + AG  D V+ +R+ M+  G+ +VPG SW
Sbjct: 648 KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSW 707

Query: 483 IEIKSKVHVFVTGDRNH 499
           +EIK ++H F  G  +H
Sbjct: 708 VEIKGEIHAFSVGSVDH 724



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 151/310 (48%), Gaps = 31/310 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +S  ++FD +P+ N+VS  T++   A++  +E A  LF R+       ++F   +++  
Sbjct: 112 LASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKL 171

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           + A++   L   +H+ A K+G   N FVGS ++D Y   S + +A  VF           
Sbjct: 172 AIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFN---------- 221

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                G+++++                 V W AM+  YS+    E A  +F +M   G  
Sbjct: 222 -----GIVRKD----------------AVVWTAMVSCYSENDCPENAFRVFSKMRVSGCK 260

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN   L   + AA  + ++ +GK  H CA+K L   +  VG +L+  YAKCG ++D+ L 
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 320

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +   +++  + +I  YAQ+ + E+A E F R+  + + PN  +L  +L AC +   +
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 380

Query: 358 EKGYSYFSQA 367
           + G    + A
Sbjct: 381 DFGKQIHNHA 390



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 139/325 (42%), Gaps = 43/325 (13%)

Query: 94  YLFSRMLLLNIRPS-----EFTFGSVIPSSTALEDLNLGKQLHAWATKVGL--QSNVFVG 146
           +L   +  L I PS      F     +    A  D   G+ +H    + G   + ++F  
Sbjct: 40  WLEDELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCA 99

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           + +L++Y KL  +  A R+F+     N+VS+ T++    +R  FE A  LF+ +      
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL------ 153

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
            W                         EG   N   L   +  A  + A G+    H+CA
Sbjct: 154 RW-------------------------EGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCA 188

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
            K     + FVG+ LI  Y+ C  + D+  VF+ +  ++ V W A++  Y++N   E A 
Sbjct: 189 WKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAF 248

Query: 327 EFFERMRINGIRPNGVTLLGLLWA--CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384
             F +MR++G +PN   L  +L A  C  + ++ KG    +   L D    +P     ++
Sbjct: 249 RVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDT---EPHVGGALL 305

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGI 409
           D+ ++ G  K+A+     +P+D  I
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYDDVI 330


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/438 (37%), Positives = 253/438 (57%), Gaps = 5/438 (1%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E        +V DE+P+ N VS  T++ R  ++ + +EA+ L+S+ML    RP+   F 
Sbjct: 323 AELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFS 382

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +  +L+DL  G+++H    K+   +NVFV SA++D+Y K   + +A  +F      
Sbjct: 383 SVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQK 442

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+V + ++I G     +  +A +LF++MP RNV SWN++I GY+Q  +  +A+  F  ML
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAML 502

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G  P   T    ++A A++ +L MGK  HA  +K   K  +FVG +L   YAK G ++
Sbjct: 503 ASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLD 562

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S  VF ++ +RN V W A+I G A+NG  EE+I  FE M   GI PN  T L +L+AC+
Sbjct: 563 SSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622

Query: 353 HTGLVEKGYSYFS--QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H+GLVE    YF   QA    P   K +HY CMVD+L+R+G   EA++ L  +       
Sbjct: 623 HSGLVEHAMHYFEMMQACGISP---KAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEAN 679

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL  C I+ N E+GE AA+R+  LD ++ + YV+LSN  +  GKW + + +R  MK
Sbjct: 680 SWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739

Query: 471 EKGMTRVPGCSWIEIKSK 488
              + +  GCSW++I+ +
Sbjct: 740 GINLKKDGGCSWVQIRDE 757



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 182/389 (46%), Gaps = 36/389 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +++ + P  +V   T +I  F      ++A+ +F  ML   + P+E T  SVI +     
Sbjct: 200 ELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAG 259

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + +L   +   A K  L   N+ V ++++ LY++    + A R+F++    +VVS+T ++
Sbjct: 260 EFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALL 319

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    E A ++  EMP RN VSW  ++  + Q G  +EAV+L+ +ML +G  PN S
Sbjct: 320 DVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNIS 379

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A A++  L  G+  H   +K     +VFV ++LI  Y KC  + D+ ++F  L
Sbjct: 380 CFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSL 439

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMR---------------------------- 333
            ++NIV WN++I GY+ N +  EA E F++M                             
Sbjct: 440 PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFH 499

Query: 334 ---INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSR 389
               +G  P  +T   +L AC     +E G      AK+   G+ +       + D+ ++
Sbjct: 500 AMLASGQSPGEITFSSVLLACASLCSLEMG--KMVHAKIIKLGIKESIFVGTALSDMYAK 557

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           SG    +K   Y++P    +  W A++ G
Sbjct: 558 SGDLDSSKRVFYEMPKRNDVA-WTAMIQG 585



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 34/298 (11%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           ++K   I  A R+F+     +VVSYTTM+  L+KR    DA++L+++ P  +V  + AMI
Sbjct: 158 HVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMI 217

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK---- 268
            G+      ++A+ +F EML  G+ PN  TL   I A        +  S    A+K    
Sbjct: 218 AGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLL 277

Query: 269 -------------FLGK---------------LDVFVGNSLISFYAKCGSMEDSLLVFDK 300
                        +L K                DV    +L+  YA+ G +E +  V D+
Sbjct: 278 DKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDE 337

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN V+W  ++  + Q G  +EA+  + +M  +G RPN      +L AC     +  G
Sbjct: 338 MPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSG 397

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               +Q  L+          + ++D+  +  +  +A+   Y LP    I  W +L+ G
Sbjct: 398 RKIHNQT-LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNSLISG 453


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/458 (35%), Positives = 272/458 (59%), Gaps = 6/458 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTALE 122
           +F ++ + NV S   II  +   H +  AI +F++ML   +  P +FTF  VI S   L 
Sbjct: 61  IFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLL 120

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
              LG+Q+HA   K G +++    +A++D+Y K   +  A +V+E+    + VS+ ++I 
Sbjct: 121 CRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLIS 180

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G ++  + + A ++F EMP R +VSW  MI GY++ G   +A+ +F EM   G+ P+  +
Sbjct: 181 GHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEIS 240

Query: 243 LPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           +   + A A + AL +GK  H  + K  FL    VF  N+L+  YAKCG ++++  +F++
Sbjct: 241 VISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVF--NALVEMYAKCGCIDEAWGLFNQ 298

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + E+++++W+ +I G A +G+G  AI  FE M+  G+ PNGVT +G+L AC H GL  +G
Sbjct: 299 MIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEG 358

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             YF   +++     + EHY C+VDLL RSG+ ++A + +  +P  P    W +LL  C+
Sbjct: 359 LRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCR 418

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH N+E+   A  ++L L+PE+  +YV+L+N  +   KW+ VSN+R+ ++ K + + PGC
Sbjct: 419 IHHNLEIAVVAMEQLLKLEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGC 478

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT-EQIR 517
           S IE+ + V  FV+GD +   + E++ +L+  T  QIR
Sbjct: 479 SLIEVNNLVQEFVSGDDSKPFSQEVFWILKGLTLHQIR 516



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 173/398 (43%), Gaps = 81/398 (20%)

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
           + +R  E  F + + +   + +L   K++HA   K+ L  + F+ + +LDL   LS ++ 
Sbjct: 1   MGVRELENRFVTTLRNCPKIAEL---KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDY 57

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           AT +F+   NPN                               V S+NA+I  Y+   ++
Sbjct: 58  ATMIFQQLENPN-------------------------------VFSYNAIIRTYTHNHKH 86

Query: 222 EEAVNLFIEML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
             A+ +F +ML  +   P+  T P  I + A +    +G+  HA   KF  K      N+
Sbjct: 87  PLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENA 146

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC-------------------------- 314
           LI  Y KCG M  +  V++++TER+ V+WN++I                           
Sbjct: 147 LIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSW 206

Query: 315 -----GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
                GYA+ G   +A+  F  M++ GI P+ ++++ +L AC   G +E G      +  
Sbjct: 207 TTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYS-- 264

Query: 370 EDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
           E  G LK    +  +V++ ++ G   EA   L++   +  +  W  ++GG   H      
Sbjct: 265 EKSGFLKNAGVFNALVEMYAKCGCIDEAWG-LFNQMIEKDVISWSTMIGGLANHGK---- 319

Query: 429 EFAARRIL------ALDPEDVSSYVMLSNALSVAGKWD 460
            +AA R+        + P  V ++V + +A + AG W+
Sbjct: 320 GYAAIRVFEDMQKAGVTPNGV-TFVGVLSACAHAGLWN 356



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 95/176 (53%), Gaps = 4/176 (2%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +  S  +VFDE+P   +VS TT+I  +A+   Y +A+ +F  M ++ I P E +  SV+P
Sbjct: 187 QMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLP 246

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L +GK +H ++ K G   N  V +A++++Y K   I+EA  +F      +V+S
Sbjct: 247 ACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVIS 306

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLF 228
           ++TMI GL    +   A+++F++M    V    V++  ++   +  G   E +  F
Sbjct: 307 WSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYF 362



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 18/222 (8%)

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           K  HA  VK       F+   ++        ++ + ++F +L   N+ ++NA+I  Y  N
Sbjct: 24  KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHN 83

Query: 320 GRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
            +   AI  F +M       P+  T   ++ +C   GL+ +       A +   G   P+
Sbjct: 84  HKHPLAITVFNQMLTTKSASPDKFTFPFVIKSC--AGLLCRRLGQQVHAHVCKFG---PK 138

Query: 379 HYA----CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF-AAR 433
            +A     ++D+ ++ G    A +   ++     +  W +L+ G     +V LG+  +AR
Sbjct: 139 THAITENALIDMYTKCGDMSGAYQVYEEMTERDAVS-WNSLISG-----HVRLGQMKSAR 192

Query: 434 RILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
            +    P   + S+  + N  +  G + +   I REM+  G+
Sbjct: 193 EVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGI 234


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 265/461 (57%), Gaps = 1/461 (0%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++  ++FD + + +VVS  TI+  +AKQ  + EAI L+     L++  + F+F  V+   
Sbjct: 146 NNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILC 205

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L++L L KQ+H      G  SN+ + S+I+D Y K   +  A  +F++    ++ ++T
Sbjct: 206 VKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWT 265

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           T++ G  K      A +LF +MP +N VSW+A+I GY++     EA++ F +M++ G+ P
Sbjct: 266 TIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINP 325

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
              T    + A A+IAAL  GK  H   ++   + +  V +SLI  Y+KCG +E S  VF
Sbjct: 326 EQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVF 385

Query: 299 DKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
             +  ++++V WN +I   AQNG GE+A++ F  M  +G++P+ +T + +L AC+H+GLV
Sbjct: 386 HLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLV 445

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           ++G  +F     +       EHY+C++DLL R+G F E    L ++   P    W ALLG
Sbjct: 446 QEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLG 505

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C+IH+N+ELG   A R++ L P+  ++YV L++  +  GKW++V  +R  M EK + + 
Sbjct: 506 VCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKE 565

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            G SWI++ +K H F+  DR H + +EIY +L        E
Sbjct: 566 RGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARHTEE 606



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 134/324 (41%), Gaps = 32/324 (9%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           PD   +     +   + Q    EA+    R+    +R     F  ++      +    GK
Sbjct: 23  PDSTSLCIAQSLLDLSSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGK 82

Query: 129 QLHAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            +H      G +     V + ++ +Y +     EA +VF+     N+ S+  M+ G  K 
Sbjct: 83  CVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKL 142

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
               +A KLF  M  ++VVSWN ++  Y++ G   EA+ L+ +  R  +  N  +    +
Sbjct: 143 GDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVL 202

Query: 248 IAAANIAALGMGKSFHA----------------------------CAVKFLGKL---DVF 276
           I    +  L + K  H                             CA     ++   D+ 
Sbjct: 203 ILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIH 262

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
              +++S YAK G M  +  +F ++ E+N V+W+A+I GYA+N  G EA+++F +M   G
Sbjct: 263 AWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFG 322

Query: 337 IRPNGVTLLGLLWACNHTGLVEKG 360
           I P   T    L AC     ++ G
Sbjct: 323 INPEQYTFSSCLCACASIAALKHG 346



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 106/210 (50%), Gaps = 10/210 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  ++    +S  ++F ++P+ N VS + +I  +A+     EA+  F++M+   I 
Sbjct: 265 TTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGIN 324

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P ++TF S + +  ++  L  GKQ+H +  +   + N  V S+++D+Y K   +E +  V
Sbjct: 325 PEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCV 384

Query: 166 FEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEM------PHRNVVSWNAMIGGYSQT 218
           F    N  +VV + TMI  L +    E A+++F +M      P R  +++  ++   S +
Sbjct: 385 FHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDR--ITFIVILSACSHS 442

Query: 219 GRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
           G  +E +  F  M  + G+ P+     C I
Sbjct: 443 GLVQEGLRFFKAMTYDHGVFPDQEHYSCLI 472


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 164/438 (37%), Positives = 253/438 (57%), Gaps = 5/438 (1%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E        +V DE+P+ N VS  T++ R  ++ + +EA+ L+S+ML    RP+   F 
Sbjct: 323 AELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFS 382

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +  +L+DL  G+++H    K+   +NVFV SA++D+Y K   + +A  +F      
Sbjct: 383 SVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQK 442

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+V + ++I G     +  +A +LF++MP RNV SWN++I GY+Q  +  +A+  F  ML
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAML 502

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G  P   T    ++A A++ +L MGK  HA  +K   K  +FVG +L   YAK G ++
Sbjct: 503 ASGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLD 562

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S  VF ++ +RN V W A+I G A+NG  EE+I  FE M   GI PN  T L +L+AC+
Sbjct: 563 SSKRVFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACS 622

Query: 353 HTGLVEKGYSYFS--QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H+GLVE    YF   QA    P   K +HY CMVD+L+R+G   EA++ L  +       
Sbjct: 623 HSGLVEHAMHYFEMMQACGISP---KAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEAN 679

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL  C I+ N E+GE AA+R+  LD ++ + YV+LSN  +  GKW + + +R  MK
Sbjct: 680 SWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMK 739

Query: 471 EKGMTRVPGCSWIEIKSK 488
              + +  GCSW++I+ +
Sbjct: 740 GINLKKDGGCSWVQIRDE 757



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 182/389 (46%), Gaps = 36/389 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +++ + P  +V   T +I  F      ++A+ +F  ML   + P+E T  SVI +     
Sbjct: 200 ELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAG 259

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + +L   +   A K  L   N+ V ++++ LY++    + A R+F++    +VVS+T ++
Sbjct: 260 EFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALL 319

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    E A ++  EMP RN VSW  ++  + Q G  +EAV+L+ +ML +G  PN S
Sbjct: 320 DVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNIS 379

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                + A A++  L  G+  H   +K     +VFV ++LI  Y KC  + D+ ++F  L
Sbjct: 380 CFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSL 439

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMR---------------------------- 333
            ++NIV WN++I GY+ N +  EA E F++M                             
Sbjct: 440 PQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFH 499

Query: 334 ---INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSR 389
               +G  P  +T   +L AC     +E G      AK+   G+ +       + D+ ++
Sbjct: 500 AMLASGQSPGEITFSSVLLACASLCSLEMG--KMVHAKIIKLGIKESIFVGTALSDMYAK 557

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           SG    +K   Y++P    +  W A++ G
Sbjct: 558 SGDLDSSKRVFYEMPKRNDVA-WTAMIQG 585



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 132/298 (44%), Gaps = 34/298 (11%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           ++K   I  A R+F+     +VVSYTTM+  L+KR    DA++L+++ P  +V  + AMI
Sbjct: 158 HVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMI 217

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK---- 268
            G+      ++A+ +F EML  G+ PN  TL   I A        +  S    A+K    
Sbjct: 218 AGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLL 277

Query: 269 -------------FLGK---------------LDVFVGNSLISFYAKCGSMEDSLLVFDK 300
                        +L K                DV    +L+  YA+ G +E +  V D+
Sbjct: 278 DKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDE 337

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN V+W  ++  + Q G  +EA+  + +M  +G RPN      +L AC     +  G
Sbjct: 338 MPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSG 397

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               +Q  L+          + ++D+  +  +  +A+   Y LP    I  W +L+ G
Sbjct: 398 RKIHNQT-LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP-QKNIVCWNSLISG 453


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 264/478 (55%), Gaps = 24/478 (5%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +P  NVVS  T++  +A      +A  LF RM + +          ++ S +  + 
Sbjct: 125 LFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKA 184

Query: 124 LNL-----GKQLHAWATKV-GL-----------------QSNVFVGSAILDLYIKLSSIE 160
             L      + + AW T V G+                 + NV   +A++  Y +   ++
Sbjct: 185 RELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLD 244

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
           EA  +F    + ++ S   MI G ++ +  + A KLF EMP RNVV+W  M+ GY +  +
Sbjct: 245 EALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQ 304

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
           +E ++ LF  ML  G+ PN  T   A+ A +++A L  GK  H    K   ++D FVG++
Sbjct: 305 SELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSA 364

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L++ YAKCG +  +  +FD   E+++++WN +I  YA +G G EAI  +E+M+ NG RPN
Sbjct: 365 LMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPN 424

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            VT + LL AC+H+GLV++G   F     +    ++ EHY C++DL SR+GR  +AK  +
Sbjct: 425 DVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLI 484

Query: 401 YDLPFDPGIG-FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + L   P  G  W ALLGGC  H N  +G  AAR ++  +P++  +Y +LSN  + AGKW
Sbjct: 485 HYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYASAGKW 544

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
              + IR EM  +G+ + PGCSWIE+ +KVHVFV  D++H  +D IY +L++    +R
Sbjct: 545 KEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHYMMR 602



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 112/213 (52%), Gaps = 15/213 (7%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVVSYTTMICGLLKRERFEDALKLFQ 198
           + +V   +A++  Y +   + +A  +F+ +    NVV++T ++ G  +    ++A  LFQ
Sbjct: 68  ERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQ 127

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            MP RNVVSWN M+  Y+  GR  +A  LF  M      P        I+ A  + +  +
Sbjct: 128 RMPQRNVVSWNTMLEAYAVAGRAGDACALFDRM------PVRDAGSWNILLAMLVRSGSV 181

Query: 259 GKSFHACAVKFLGKL---DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
            K     A +  G++   DV    +++   A+ G+++++ L+FD + ERN+V+WNA+I G
Sbjct: 182 DK-----ARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISG 236

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           Y +N R +EA++ F +M    I    + + G +
Sbjct: 237 YTRNHRLDEALDLFTKMPHRDIASCNIMITGFI 269



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 38/277 (13%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ++       ++FDE+P+ NVV+ TT++  + K    E ++ LF  ML+  IRP++ TF  
Sbjct: 270 QNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLG 329

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + + + L  L  GKQ+H    K   Q + FVGSA++++Y K   +  A ++F+      
Sbjct: 330 ALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFD------ 383

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                      L RE              ++++SWN +I  Y+  G   EA++L+ +M  
Sbjct: 384 -----------LSRE--------------KDLISWNGIIAAYAHHGVGIEAIHLYEKMQG 418

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV--KFLGKLDVFVGNSLISFYAKCGSM 291
            G  PN  T    + A ++   +  G       V  + +   D      LI   ++ G +
Sbjct: 419 NGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHY-TCLIDLCSRAGRL 477

Query: 292 EDS--LLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           +D+  L+ + K+   +   W+A++ G   N  G E+I
Sbjct: 478 DDAKRLIHYLKIKPASGSVWSALLGGC--NAHGNESI 512



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 53/253 (20%)

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
            E   +PN      +I  L    R  DA KLF   P R+VVSW A++  Y++ G   +A 
Sbjct: 37  LERAQDPN-----RLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDAR 91

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           +LF                                       +   + +V    +L+S Y
Sbjct: 92  SLFD--------------------------------------RSDARRNVVTWTALLSGY 113

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           A+ G ++++ ++F ++ +RN+V+WN ++  YA  GR  +A   F+RM +       + L 
Sbjct: 114 ARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLA 173

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            L+     +G V+K    F +    D        +  MVD ++RSG   EA+  L+D   
Sbjct: 174 MLV----RSGSVDKARELFGRMPERD-----VMAWTTMVDGVARSGNVDEAR-LLFDSMP 223

Query: 406 DPGIGFWKALLGG 418
           +  +  W A++ G
Sbjct: 224 ERNVVSWNAMISG 236



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 27/229 (11%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N LI   A  G + D+  +FD   ER++V+W A++  YA+ G   +A   F+R   +  R
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDR---SDAR 100

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
            N VT   LL      GLV++    F +    +        +  M++  + +GR  +A  
Sbjct: 101 RNVVTWTALLSGYARAGLVDEAEVLFQRMPQRN-----VVSWNTMLEAYAVAGRAGDACA 155

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAG 457
               +P     G W  LL       +V+     AR +    PE DV ++  + + ++ +G
Sbjct: 156 LFDRMPVRDA-GSWNILLAMLVRSGSVD----KARELFGRMPERDVMAWTTMVDGVARSG 210

Query: 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG-DRNHHMNDEI 505
             D    +   M E+ +      SW       +  ++G  RNH +++ +
Sbjct: 211 NVDEARLLFDSMPERNVV-----SW-------NAMISGYTRNHRLDEAL 247


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 265/457 (57%), Gaps = 36/457 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +    VV+ T++I  +A++   +EAI LF  M    + P  FT  +V+ +      
Sbjct: 55  VFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGS 114

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK +H +  +  +QSN+FV +A++D+Y K  S+E+A  VF                 
Sbjct: 115 LENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVF----------------- 157

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          EMP ++++SWN MIGGYS+     EA++LF +M+ E + P+ +TL
Sbjct: 158 --------------LEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTL 202

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
            C + A A++A+L  GK  H   ++     D  V N+L+  Y KCG    + L+FD +  
Sbjct: 203 ACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPT 262

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           ++++TW  +I GY  +G G  AI  F  MR  GI P+ V+ + +L+AC+H+GL+++G+ +
Sbjct: 263 KDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRF 322

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F+   ++D   +KP  EHYAC+VDLL+RSG+   A +F+  +P +P    W ALL GC+I
Sbjct: 323 FNV--MQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRI 380

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H +V+L E  A  +  L+PE+   YV+L+N  + A KW+ V  +R+++  +G+ + PGCS
Sbjct: 381 HHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCS 440

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           WIE+KSKVH+F+ G+ +H    +I  +L+    +++E
Sbjct: 441 WIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKE 477



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 9/212 (4%)

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A AN   + +G++ H   VK          N+L+  YAKCG ++ ++LVFD ++ R +VT
Sbjct: 7   ACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTVVT 66

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           W ++I  YA+ G  +EAI  F  M   G+ P+  T+  +L AC   G +E G    +  +
Sbjct: 67  WTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHNYIR 126

Query: 369 LEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS--N 424
             D   ++   + C  ++D+ ++ G  ++A     ++P    I  W  ++GG   +S  N
Sbjct: 127 END---MQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIIS-WNTMIGGYSKNSLPN 182

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVA 456
             L  F    +L + P+  +   +L    S+A
Sbjct: 183 EALSLF-GDMVLEMKPDGTTLACILPACASLA 213



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 133/308 (43%), Gaps = 48/308 (15%)

Query: 20  LHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFS------SVHQVFDEVPDLNV 73
           LH+ A N  +E  K     +    ++++   C +  D ++        + VF E+P  ++
Sbjct: 106 LHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDI 165

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           +S  T+IG ++K     EA+ LF  M +L ++P   T   ++P+  +L  L+ GK++H  
Sbjct: 166 ISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACASLASLDRGKEVHGH 224

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             + G  S+  V +A++D+Y+K                          CG+    R    
Sbjct: 225 ILRNGFFSDQQVANALVDMYVK--------------------------CGVPVLARL--- 255

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             LF  +P +++++W  MI GY   G    A+  F EM + G+ P+  +    + A ++ 
Sbjct: 256 --LFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHS 313

Query: 254 AALGMGKSF-----HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-TERNIV 307
             L  G  F       C VK   KL+ +    ++   A+ G +  +      +  E +  
Sbjct: 314 GLLDEGWRFFNVMQDECNVK--PKLEHYA--CIVDLLARSGKLAMAYKFIKSMPIEPDAT 369

Query: 308 TWNAVICG 315
            W A++ G
Sbjct: 370 IWGALLSG 377


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/467 (35%), Positives = 262/467 (56%), Gaps = 40/467 (8%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D       +FDE+P+L+ VS   II  +A    YE++  LF R+   +     F F 
Sbjct: 290 SKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFA 349

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  +    +L++G+Q HA A      S V VG+A++D+Y K                 
Sbjct: 350 TMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKC---------------- 393

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                          E+FEDA ++F  + +RN V W A+I  Y Q G +EEA+ +F EM 
Sbjct: 394 ---------------EKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMN 438

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSM 291
           RE +  + +T    + A+AN+A++ +GK  H+  ++ LG L  VF G+ L+  YA CGSM
Sbjct: 439 RENVHGDQATFASTLKASANLASVSLGKQLHSSVIR-LGLLSSVFSGSVLVDMYANCGSM 497

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +D++ VF ++ +RNIV WNA+I  Y+QNG  E     F  M  +G+ P+ V+ L +L AC
Sbjct: 498 KDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTAC 557

Query: 352 NHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           +H GLVEK   YF   +Q    DP   + +HYA M+D+L RSGRF EA+  + ++PF+P 
Sbjct: 558 SHRGLVEKALWYFNSMTQVYKLDP---RRKHYATMIDVLCRSGRFNEAENLISEMPFEPD 614

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRR 467
              W ++L  C+IH N +L + AA ++  +D   D ++YV +SN  + AGKW+N + +++
Sbjct: 615 EVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKK 674

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTE 514
            M+E+G+ +V   SW+EI  +VHVF   DR H   ++I   + S  E
Sbjct: 675 AMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVE 721



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 177/388 (45%), Gaps = 43/388 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+F E+P  + VS   +I  + K    EEA+ LF +M  ++ +PS FTF +++  S   E
Sbjct: 199 QLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSE 258

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D+  G+Q+H  A K     ++FV +A+LD Y K   I+ A                    
Sbjct: 259 DVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAK------------------- 299

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                        LF EMP  + VS+N +I GY+  G+ E++ +LF  +  +G   +   
Sbjct: 300 ------------NLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRL--QGTSFDRKN 345

Query: 243 LPCAII--AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            P A +   AA    L MG+  HA AV      +V VGN+L+  YAKC   ED+  +F  
Sbjct: 346 FPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFAN 405

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           L  RN V W A+I  Y Q G  EEA++ F+ M    +  +  T    L A  +   V  G
Sbjct: 406 LAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLG 465

Query: 361 YSYFSQA-KLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               S   +L   G+L      + +VD+ +  G  K+A E   ++P D  I  W AL+  
Sbjct: 466 KQLHSSVIRL---GLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP-DRNIVCWNALISA 521

Query: 419 CQIHSNVE--LGEFAARRILALDPEDVS 444
              + + E     FA      L P+ VS
Sbjct: 522 YSQNGDAEATFSSFADMIESGLYPDSVS 549



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 166/355 (46%), Gaps = 33/355 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F+ +   N VS T +IG +++ +  +EA  L++ M    ++P   TF +++       
Sbjct: 98  ELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTT 157

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L    Q+H+   + G  +++ V ++++D Y K   ++ A+                   
Sbjct: 158 TLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIAS------------------- 198

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                       +LF EMP ++ VS+N MI GY++ G  EEA+ LF++M      P+  T
Sbjct: 199 ------------QLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFT 246

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +  +     +  G+  H  A+K     D+FV N+L+ FY+K   ++ +  +FD++ 
Sbjct: 247 FAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMP 306

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E + V++N +I GYA NG+ E++ + F+R++             +L        +  G  
Sbjct: 307 ELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQ 366

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
             +QA +    + + +    +VD+ ++  +F++A     +L +   +  W A++ 
Sbjct: 367 THAQAVVT-TAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVP-WTAIIS 419



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 103/195 (52%)

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
           ++ + I +A ++F++    N  S   M+ G +K      A +LF+ M  RN VSW  MIG
Sbjct: 57  VRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIG 116

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           GYSQ  + +EA NL+ EM R G+ P+H T    +    +   L      H+  ++F    
Sbjct: 117 GYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSA 176

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
            + V NSL+  Y K   ++ +  +F ++  ++ V++N +I GY + G  EEA++ F +MR
Sbjct: 177 SLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMR 236

Query: 334 INGIRPNGVTLLGLL 348
               +P+G T   +L
Sbjct: 237 NMDFQPSGFTFAAML 251


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 262/477 (54%), Gaps = 35/477 (7%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           PA  + S      +    SV +VFDE+P+ +VVS  T++   A+   + EA+ L   M  
Sbjct: 107 PAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWR 166

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
              +P  FT  SV+P      D+  G +LH +AT+ G   +VFVGS+++D+Y   +    
Sbjct: 167 DGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCT---- 222

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
                                      R + ++K+F  +P R+ + WN+M+ G +Q G  
Sbjct: 223 ---------------------------RTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSV 255

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           +EA+ LF  ML  G+ P   T    I A  N+A+L +GK  HA  ++     +VF+ +SL
Sbjct: 256 DEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSL 315

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I  Y KCG++  +  +FD++   +IV+W A+I G+A +G   EA+  F+RM +  ++PN 
Sbjct: 316 IDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNH 375

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEF 399
           +T L +L AC+H GLV+KG+ YF+   + D   + P  EH+A + D L R G+ +EA  F
Sbjct: 376 ITFLAVLTACSHAGLVDKGWKYFNS--MSDHYGIVPSLEHHAALADTLGRPGKLEEAYNF 433

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           +  +   P    W  LL  C++H N  L E  A++I  L+P  + S+++LSN  S +G+W
Sbjct: 434 ISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRW 493

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           +  +++R+ M++KGM + P CSWIE+K+K HVFV  D++H   + I   L   +EQ+
Sbjct: 494 NEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQM 550



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 171/346 (49%), Gaps = 29/346 (8%)

Query: 84  AKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP----SSTALEDLNLGKQLHAWATKVGL 139
           A Q  +  AI LF RM   +   +  +  + +P    S  AL    LG  LHA A + G 
Sbjct: 30  ASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGA 89

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
            ++ F  +A+L+LY KL +          +H+P +     ++         E   K+F E
Sbjct: 90  FADRFAANALLNLYCKLPA--------PPSHSPEMDGSAVVL---------ESVRKVFDE 132

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           MP ++VVSWN ++ G +++GR+ EA+ L  EM R+G  P+  TL   +   A  A +  G
Sbjct: 133 MPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRG 192

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
              H  A +     DVFVG+SLI  YA C   + S+ VFD L  R+ + WN+++ G AQN
Sbjct: 193 MELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQN 252

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYSYFSQAKLEDPGMLK 376
           G  +EA+  F RM  +GI+P  VT   L+ AC +     L ++ ++Y  +   +    + 
Sbjct: 253 GSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFIS 312

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
               + ++D+  + G    A+  ++D    P I  W A++ G  +H
Sbjct: 313 ----SSLIDMYCKCGNVSIARR-IFDRIQSPDIVSWTAMIMGHALH 353



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 120/267 (44%), Gaps = 19/267 (7%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           S   ++FD +   ++VS T +I   A      EA+ LF RM L N++P+  TF +V+ + 
Sbjct: 326 SIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTAC 385

Query: 119 TALEDLNLG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVVS 176
           +    ++ G K  ++ +   G+  ++   +A+ D   +   +EEA          P    
Sbjct: 386 SHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASV 445

Query: 177 YTTMI--CGLLKRERF--EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           ++T++  C + K      E A K+F   P R++ S   +   YS +GR  EA +L   M 
Sbjct: 446 WSTLLRACKVHKNTVLAEEVAKKIFDLEP-RSMGSHIILSNTYSSSGRWNEAAHLRKSMR 504

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           ++G+        C+ I   N   + +     H    + +  L+VF    +     + G +
Sbjct: 505 KKGM---QKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMV-----RQGYV 556

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQ 318
            ++  VF  + E      N+V+CG+++
Sbjct: 557 PNTDDVFQDIEEEQK---NSVLCGHSE 580


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/448 (37%), Positives = 259/448 (57%), Gaps = 12/448 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+   + VS   II    +     + + +   ML   + P E+TFGSV+ +  A +
Sbjct: 439 RVFDEMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKA-CAGD 497

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            LN G ++H    K+G+ SN ++GS+++D+Y K   I+EA ++    HN   +       
Sbjct: 498 SLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKI----HNKIFIGIGDSNT 553

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                E  E+   +        +VSWNA+I GY    ++E+A   F  M+  G+ P+  T
Sbjct: 554 YSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFT 613

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +   AN+A++G+GK  HA  +K   + DV++ ++L+  Y+KCG++ DS L+F+K  
Sbjct: 614 YSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAP 673

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R+ VTWNA+ICGYA +G GEEAI+ FE M +  I PN  T + LL AC H GLVE+G  
Sbjct: 674 IRDFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLD 733

Query: 363 YFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           YF   K E   DP   + EHY+ MVD+L +SG  ++A E + ++PF+     W+ LL  C
Sbjct: 734 YFHMMKKEYGLDP---RLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSAC 790

Query: 420 QIH-SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           +I+ +NVE  E AA  +L LDP+D S+Y++LSN  + AG WD  S +R  M+   + + P
Sbjct: 791 KINRNNVEAAEVAANALLRLDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEP 850

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           GCSW+EI+ + H F+ GD+ H    EIY
Sbjct: 851 GCSWVEIRDEFHTFLVGDKAHPRWKEIY 878



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 151/296 (51%), Gaps = 8/296 (2%)

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           LGKQ HA     G +  VFV + +L LYI   ++  AT++F+     +VVS+  MI G  
Sbjct: 67  LGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYA 126

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                  A   F+ MP R+VVSWN+M+ G+ QTG N E+V +FIEM R G+  ++ +   
Sbjct: 127 ASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSV 186

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            +   + +    +G   H  A++     DV  G++L+  YAKC  +++S  VF  + ++N
Sbjct: 187 ILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKN 246

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
            ++W+A+I G  QN   +  ++ F+ M+  G+  +      +L +C     +  G    +
Sbjct: 247 WISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHA 306

Query: 366 QAKLED---PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            A   D    G+++       +D+ ++    ++A+  L+D+  +  +  + A++ G
Sbjct: 307 HALKSDFVKDGIVR----TATLDMYAKCNNMQDAQR-LFDMSENLNLQSYNAMITG 357



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 182/419 (43%), Gaps = 68/419 (16%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +RT ++   ++ +      ++FD   +LN+ S   +I  ++++ +   A+ LF ++   +
Sbjct: 319 VRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSS 378

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +   E +    + +   ++ L+ G QLH  ATK     N+ V +A +D+Y K  +++EA 
Sbjct: 379 LGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEAC 438

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           RVF+                               EM  ++ VSWNA+I  + Q     +
Sbjct: 439 RVFD-------------------------------EMGRKDAVSWNAIIAAHEQNEERSK 467

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            +N+ + MLR G+ P+  T    + A A   +L  G   H   VK     + ++G+SL+ 
Sbjct: 468 TLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTTIVKLGMASNPYIGSSLVD 526

Query: 284 FYAKCG---------------------------SMEDSLLVFDKLTERNIVTWNAVICGY 316
            Y+KCG                           ++E+   + D+  +  IV+WNA+I GY
Sbjct: 527 MYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGY 586

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376
               + E+A  FF RM   GI P+  T   +L  C +   +  G    +    ++   L+
Sbjct: 587 VMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKE---LQ 643

Query: 377 PEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
            + Y C  +VD+ S+ G   +++      P    +  W A++ G   H    +GE A +
Sbjct: 644 YDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVT-WNAMICGYAHHG---MGEEAIK 698



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 180/397 (45%), Gaps = 51/397 (12%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIR----TDSVSCGSESDKFSSVHQ----- 63
           S + + K+ S+  NY + TQ   +      A+R    TD VS  +  D ++   +     
Sbjct: 183 SFSVILKVCSILENYKLGTQIHGI------ALRMGYDTDVVSGSALLDMYAKCKRLDESF 236

Query: 64  -VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VF  +P  N +S + II    + +  +  + +F  M  + +  S+  + SV+ S   L 
Sbjct: 237 TVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLP 296

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL LG QLHA A K     +  V +A LD+Y K +++++A R+F+ + N           
Sbjct: 297 DLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSEN----------- 345

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                N+ S+NAMI GYSQ      A+ LF ++ +  L  +  +
Sbjct: 346 --------------------LNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEIS 385

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L  A+ A A +  L  G   H  A K     ++ V N+ I  Y KC +++++  VFD++ 
Sbjct: 386 LSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMG 445

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            ++ V+WNA+I  + QN    + +     M  +G+ P+  T   +L AC    L      
Sbjct: 446 RKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSLNHGMEI 505

Query: 363 YFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKE 398
           + +  KL   GM   P   + +VD+ S+ G   EA++
Sbjct: 506 HTTIVKL---GMASNPYIGSSLVDMYSKCGMIDEAEK 539



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 136/287 (47%), Gaps = 31/287 (10%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+ +P  +VVS  +++  F +     E++ +F  M    +     +F  ++   + LE+ 
Sbjct: 138 FEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENY 197

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            LG Q+H  A ++G  ++V  GSA+LD+Y K                             
Sbjct: 198 KLGTQIHGIALRMGYDTDVVSGSALLDMYAKC---------------------------- 229

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
              +R +++  +F  MP +N +SW+A+I G  Q    +  + +F EM + G+  + S   
Sbjct: 230 ---KRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYA 286

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + + A +  L +G   HA A+K     D  V  + +  YAKC +M+D+  +FD     
Sbjct: 287 SVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENL 346

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           N+ ++NA+I GY+Q   G  A+  F ++  + +  + ++L G L AC
Sbjct: 347 NLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRAC 393


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 269/471 (57%), Gaps = 12/471 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG    +  +   VFD  P  +V++   II  + K   +EE+  LF  M    + P+  T
Sbjct: 166 CG----QLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVT 221

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              V+ + + L+DL  GK++H++     ++SN+ + +A++D+Y     ++ A  +F   +
Sbjct: 222 LVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMN 281

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           N +++S+TT++ G       + A   F +MP ++ VSW AMI GY ++ R +EA+ LF  
Sbjct: 282 NRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRN 341

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M    + P+  T+   + A A++ AL +G+       +   K D+FV N+LI  Y KCG 
Sbjct: 342 MQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGD 401

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++ +  +F ++++R+  TW A+I G A NG GE+A++ F  M    I P+ +T +G+L A
Sbjct: 402 VDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 461

Query: 351 CNHTGLVEKGYSYF----SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           C HTGLV+KG  YF    SQ  +E P +    HY C+VDLL+R+GR KEA E + ++P  
Sbjct: 462 CTHTGLVDKGRKYFLRMTSQHGIE-PNI---AHYGCLVDLLARAGRLKEAYEVIENMPIK 517

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
                W ALL GC+++   ++ E   ++IL L+P++ + YV+L N  +   +W+++  +R
Sbjct: 518 ANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELR 577

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + M +KG+ + PGCS IE+  +VH FV GDR+H     I A L   T+ ++
Sbjct: 578 QMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLK 628



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 199/442 (45%), Gaps = 72/442 (16%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104
           R  +  C  E   F    ++FDE+P+ N+    T+I  +++    +  + L+  ML   +
Sbjct: 55  RVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV 114

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           +P  +TF  +    T    L  G+QLH    K GLQ NVFV +A++ +Y+    ++ A  
Sbjct: 115 KPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARG 174

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           VF+             +C                  P  +V++WN +I  Y++ G+ EE+
Sbjct: 175 VFD-------------VC------------------PKADVITWNMIISAYNKVGKFEES 203

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
             LF+ M  + ++P   TL   + A + +  L  GK  H+       + ++ + N++I  
Sbjct: 204 RRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDM 263

Query: 285 YAKCGSMEDSLLV-------------------------------FDKLTERNIVTWNAVI 313
           YA CG M+ +L +                               FDK+ E++ V+W A+I
Sbjct: 264 YADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMI 323

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLE 370
            GY ++ R +EA+E F  M+   ++P+  T++ +L AC H G +E G    +Y  + K++
Sbjct: 324 DGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIK 383

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI--HSNVELG 428
           +   ++      ++D+  + G   +A+    ++        W A++ G  +  H    L 
Sbjct: 384 NDLFVR----NALIDMYFKCGDVDKAESIFREMSQRDKFT-WTAMIVGLAVNGHGEKALD 438

Query: 429 EFAARRILALDPEDVSSYVMLS 450
            F+     ++ P++++   +LS
Sbjct: 439 MFSNMLKASILPDEITYIGVLS 460



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 7/229 (3%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           NP + +     C   +   F+ A +LF E+P  N+  WN MI GYS+    +  V+L++E
Sbjct: 49  NPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLE 108

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR G+ P+  T P          AL  G+  H   +K   + +VFV  +L+  Y  CG 
Sbjct: 109 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQ 168

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++ +  VFD   + +++TWN +I  Y + G+ EE+   F  M    + P  VTL+ +L A
Sbjct: 169 LDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 228

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           C+    +  G   +SY    K+E   +L+      M+D+ +  G    A
Sbjct: 229 CSKLKDLRTGKKVHSYVKNCKVESNLVLE----NAMIDMYADCGEMDSA 273


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 269/471 (57%), Gaps = 12/471 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG    +  +   VFD  P  +V++   II  + K   +EE+  LF  M    + P+  T
Sbjct: 187 CG----QLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVT 242

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              V+ + + L+DL  GK++H++     ++SN+ + +A++D+Y     ++ A  +F   +
Sbjct: 243 LVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMN 302

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           N +++S+TT++ G       + A   F +MP ++ VSW AMI GY ++ R +EA+ LF  
Sbjct: 303 NRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRN 362

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M    + P+  T+   + A A++ AL +G+       +   K D+FV N+LI  Y KCG 
Sbjct: 363 MQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGD 422

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++ +  +F ++++R+  TW A+I G A NG GE+A++ F  M    I P+ +T +G+L A
Sbjct: 423 VDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 482

Query: 351 CNHTGLVEKGYSYF----SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           C HTGLV+KG  YF    SQ  +E P +    HY C+VDLL+R+GR KEA E + ++P  
Sbjct: 483 CTHTGLVDKGRKYFLRMTSQHGIE-PNI---AHYGCLVDLLARAGRLKEAYEVIENMPIK 538

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
                W ALL GC+++   ++ E   ++IL L+P++ + YV+L N  +   +W+++  +R
Sbjct: 539 ANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELR 598

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + M +KG+ + PGCS IE+  +VH FV GDR+H     I A L   T+ ++
Sbjct: 599 QMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLK 649



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 199/442 (45%), Gaps = 72/442 (16%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104
           R  +  C  E   F    ++FDE+P+ N+    T+I  +++    +  + L+  ML   +
Sbjct: 76  RVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV 135

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           +P  +TF  +    T    L  G+QLH    K GLQ NVFV +A++ +Y+    ++ A  
Sbjct: 136 KPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARG 195

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           VF+             +C                  P  +V++WN +I  Y++ G+ EE+
Sbjct: 196 VFD-------------VC------------------PKADVITWNMIISAYNKVGKFEES 224

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
             LF+ M  + ++P   TL   + A + +  L  GK  H+       + ++ + N++I  
Sbjct: 225 RRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDM 284

Query: 285 YAKCGSMEDSLLV-------------------------------FDKLTERNIVTWNAVI 313
           YA CG M+ +L +                               FDK+ E++ V+W A+I
Sbjct: 285 YADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMI 344

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLE 370
            GY ++ R +EA+E F  M+   ++P+  T++ +L AC H G +E G    +Y  + K++
Sbjct: 345 DGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIK 404

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI--HSNVELG 428
           +   ++      ++D+  + G   +A+    ++        W A++ G  +  H    L 
Sbjct: 405 NDLFVR----NALIDMYFKCGDVDKAESIFREMSQRDKFT-WTAMIVGLAVNGHGEKALD 459

Query: 429 EFAARRILALDPEDVSSYVMLS 450
            F+     ++ P++++   +LS
Sbjct: 460 MFSNMLKASILPDEITYIGVLS 481



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 7/229 (3%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           NP + +     C   +   F+ A +LF E+P  N+  WN MI GYS+    +  V+L++E
Sbjct: 70  NPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLE 129

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLR G+ P+  T P          AL  G+  H   +K   + +VFV  +L+  Y  CG 
Sbjct: 130 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQ 189

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++ +  VFD   + +++TWN +I  Y + G+ EE+   F  M    + P  VTL+ +L A
Sbjct: 190 LDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSA 249

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           C+    +  G   +SY    K+E   +L+      M+D+ +  G    A
Sbjct: 250 CSKLKDLRTGKKVHSYVKNCKVESNLVLE----NAMIDMYADCGEMDSA 294


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 266/457 (58%), Gaps = 33/457 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VF+   + N ++ + +I  +++  + E A+ +FS+M      P+EFT   V+ + + + 
Sbjct: 276 HVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVG 335

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GKQ H    K+G +  V+V SA++D+Y K                          C
Sbjct: 336 TLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAK--------------------------C 369

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G +      DA + F +    ++V W AM+ G+ Q G  E+A+ L+  M +EG+ PN  T
Sbjct: 370 GCIG-----DAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLT 424

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A +AAL  GK  H   +KF   L   VG++L + Y+KCG++ED ++VF ++ 
Sbjct: 425 ITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMP 484

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R+++ WN++I G++QNGRG +AI  FE M++ G  P+ VT + +L AC+H GLV++G++
Sbjct: 485 HRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWT 544

Query: 363 YFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF ++ ++D G+  + +HYACMVD+LSR+G   EAK+F+  +  D G   W+ +LG C+ 
Sbjct: 545 YF-RSMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFIESITIDHGTCLWRIVLGACRS 603

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
             + ++G +A  +++ L   D ++Y++LSN  +   KW++V  +R  MK  G+++ PGCS
Sbjct: 604 LRDFDVGAYAGEKLMDLGTGDSAAYILLSNIYAAQRKWNDVERVRYLMKLVGVSKDPGCS 663

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+E+ S+VHVFV G++ H   + I   LR   + +++
Sbjct: 664 WVELNSRVHVFVVGEQQHPDAEIINTELRRLGKHMKD 700



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 151/306 (49%), Gaps = 46/306 (15%)

Query: 130 LHAWATKV-GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           +HA A K+    SNVFV +A+L++Y KL  I +A  VF+                     
Sbjct: 139 VHALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFD--------------------- 177

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     EMPHRN VSW AM+ GY+    ++EA  LF +ML E  +  +  +  A++
Sbjct: 178 ----------EMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVL 227

Query: 249 AAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
           +A ++   L MG   H   VK      V V NSL++ YAK G M+ +  VF+   ERN +
Sbjct: 228 SAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSI 287

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYF 364
           TW+A+I GY+QNG  E A+  F +M   G  P   TL+G+L AC+  G + +G   +   
Sbjct: 288 TWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLM 347

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            +   E    +K    + +VD+ ++ G   +AKE       +  I  W A++ G     +
Sbjct: 348 VKLGFEVQVYVK----SALVDMYAKCGCIGDAKECFNQFS-ELDIVLWTAMVTG-----H 397

Query: 425 VELGEF 430
           V+ GEF
Sbjct: 398 VQNGEF 403


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 181/508 (35%), Positives = 274/508 (53%), Gaps = 36/508 (7%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           LN    L +L     +      V       ++   +   ++ D  ++  +VFD V  +NV
Sbjct: 363 LNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINV 422

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS   +I  +++Q    EA+ LF  M L    P+  TF S++  S++L  L L  Q+H  
Sbjct: 423 VSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCL 482

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             K G+  + F GSA++D+Y K S + +A  VFE+ ++                      
Sbjct: 483 IIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYD---------------------- 520

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
                    R++V WNAM  GYSQ   NEE++ L+ ++    L PN  T    I AA+NI
Sbjct: 521 ---------RDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNI 571

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           A+L  G+ FH   +K     D FV NSL+  YAKCGS+E+S   F    +R+I  WN++I
Sbjct: 572 ASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMI 631

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF-SQAKLE-D 371
             YAQ+G   +A+E FERM + G++PN VT +GLL AC+H GL++ G+ +F S +K   +
Sbjct: 632 STYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIE 691

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
           PG+   +HYACMV LL R+G+  EAKEF+  +P  P    W++LL  C++  +VELG +A
Sbjct: 692 PGI---DHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYA 748

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A   ++ DP D  SY++LSN  +  G W +V  +R +M    + + PG SWIE+ ++VH 
Sbjct: 749 AEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNNEVHR 808

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           F+  D  H  +  I  VL +   QI+ F
Sbjct: 809 FIARDTAHRDSTLISLVLDNLILQIKGF 836



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 201/408 (49%), Gaps = 40/408 (9%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K  +  ++F+ + D +VVS TT+I    +   + +A+ LF  M+    +P  F   SV+ 
Sbjct: 305 KVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLN 364

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           S  +L+ L  G+Q+HA+A KV + ++ FV + ++D+Y K  S+  A +VF+         
Sbjct: 365 SCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFD--------- 415

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
              ++  +                   NVVS+NAMI GYS+  +  EA++LF EM     
Sbjct: 416 ---LVAAI-------------------NVVSYNAMIEGYSRQDKLVEALDLFREMRLSLS 453

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            P   T    +  ++++  L +    H   +KF   LD F G++LI  Y+KC  + D+ L
Sbjct: 454 PPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARL 513

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VF+++ +R+IV WNA+  GY+Q    EE+++ ++ ++++ ++PN  T   ++ A ++   
Sbjct: 514 VFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIAS 573

Query: 357 VEKGYSYFSQA---KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           +  G  + +Q     L+D     P     +VD+ ++ G  +E+ +  +       I  W 
Sbjct: 574 LRHGQQFHNQVIKMGLDD----DPFVTNSLVDMYAKCGSIEESHK-AFSSTNQRDIACWN 628

Query: 414 ALLGGCQIHSNVELG-EFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           +++     H +     E   R I+     +  ++V L +A S AG  D
Sbjct: 629 SMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLD 676



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 190/394 (48%), Gaps = 41/394 (10%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR-MLLLNIRPSEFTFGSVIPS 117
           S   ++FD +P  N+V+ ++++  + +  +  EA+ LF R M   + +P+E+   SV+ +
Sbjct: 104 SDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRA 163

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T L +L+   QLH +  K G   +V+VG++++D Y K   ++EA  +F           
Sbjct: 164 CTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIF----------- 212

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                         D LK+      +  V+W A+I GY++ GR+E ++ LF +M    + 
Sbjct: 213 --------------DGLKV------KTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVY 252

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+   +   + A + +  L  GK  H   ++    +DV V N +I FY KC  ++    +
Sbjct: 253 PDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKL 312

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F++L ++++V+W  +I G  QN    +A++ F  M   G +P+      +L +C     +
Sbjct: 313 FNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQAL 372

Query: 358 EKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           +KG   ++Y  +  +++   +K      ++D+ ++      A++ ++DL     +  + A
Sbjct: 373 QKGRQVHAYAIKVNIDNDDFVKNG----LIDMYAKCDSLTNARK-VFDLVAAINVVSYNA 427

Query: 415 LLGGCQIHSN-VELGEFAARRILALDPEDVSSYV 447
           ++ G       VE  +      L+L P  + ++V
Sbjct: 428 MIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFV 461



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 129/259 (49%), Gaps = 11/259 (4%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           H  +V    T++    K     DA KLF  MPHRN+V+W++M+  Y+Q G + EA+ LF 
Sbjct: 83  HQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFC 142

Query: 230 EMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             +R     PN   L   + A   +  L      H   VK     DV+VG SLI FYAK 
Sbjct: 143 RFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKR 202

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G ++++ L+FD L  +  VTW A+I GYA+ GR E +++ F +MR   + P+   +  +L
Sbjct: 203 GYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVL 262

Query: 349 WACNHTGLVEKG---YSYFSQAKLE-DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
            AC+    +E G   + Y  +   + D  ++       ++D   +  + K  ++ L++  
Sbjct: 263 SACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNG-----IIDFYLKCHKVKTGRK-LFNRL 316

Query: 405 FDPGIGFWKALLGGCQIHS 423
            D  +  W  ++ GC  +S
Sbjct: 317 VDKDVVSWTTMIAGCMQNS 335


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 171/520 (32%), Positives = 270/520 (51%), Gaps = 77/520 (14%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N+VS + +IG FA+  + +EA+ L  RM      P+  T  SV+P+   L++LNLGK++H
Sbjct: 10  NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            + T+ G  SN FV + ++D+Y + + +  A ++F      NVVSY TMI G  +    E
Sbjct: 70  GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129

Query: 192 DALKLFQEM-------------------------------------PHRNVVSWNAMIGG 214
            A +LF +M                                       R+  +WN +I G
Sbjct: 130 KAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISG 189

Query: 215 YSQTGRNEEAVNLFIEMLREGLVPN---------------HSTLPCAII----------- 248
           Y+   + E   NL  +M  +G  PN               H+ L   +            
Sbjct: 190 YACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPD 249

Query: 249 ---------AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                    A A +A +  GK  HA +++   +LDV +G +L+  YAKCGS++ ++ V++
Sbjct: 250 IYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYN 309

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           +++  N+V+ NA++  YA +G G+E I  F  M  NG RP+ VT L +L +C H G VE 
Sbjct: 310 RISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVET 369

Query: 360 GYSYFSQAKLED--PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           G+ +F      +  P +   +HY C+VDLLSR+GR  EA E +  +P  P    W ALLG
Sbjct: 370 GHEFFDLMTYYNVTPSL---KHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLG 426

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
           GC I  NVELGE AA  ++ L+P +  +YV+L+N  + AG+W ++   R+ +K++GM + 
Sbjct: 427 GCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKS 486

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           PGCSWIE +  +HVF++ D++H   ++IY  L +    +R
Sbjct: 487 PGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 526


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 266/469 (56%), Gaps = 39/469 (8%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S K  SV ++FD +P  +VVS  T+I   A+   YEEA+ +   M   N+RP  FT  S+
Sbjct: 146 SVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSI 205

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P  T   ++  GK++H +A + G   +VF+GS+++D+Y K + +E +            
Sbjct: 206 LPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELS------------ 253

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                 +C              F  + +R+ +SWN++I G  Q GR ++ +  F  ML+E
Sbjct: 254 ------VCA-------------FHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKE 294

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
            + P   +    I A A++ AL +GK  HA  ++     + F+ +SL+  YAKCG+++ +
Sbjct: 295 KVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMA 354

Query: 295 LLVFDK--LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
             +F+K  + +R++V+W A+I G A +G   +A+  FE M ++G++P  V  + +L AC+
Sbjct: 355 RYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACS 414

Query: 353 HTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H GLV++G+ YF+  + +    PG+   EHYA + DLL R+GR +EA +F+ ++  +P  
Sbjct: 415 HAGLVDEGWKYFNSMQRDFGVAPGL---EHYAAVADLLGRAGRLEEAYDFISNMGEEPTG 471

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W  LL  C+ H N+EL E    +IL +DP ++ ++V++SN  S A +W + + +R  M
Sbjct: 472 SVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRM 531

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           ++ G+ + P CSWIE+ +KVH F+ GD++H   D+I   L    EQ+ +
Sbjct: 532 RKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEK 580



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 175/354 (49%), Gaps = 25/354 (7%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           II  +A       ++  F+ +    I P    F S++ +ST  +  NL + LHA   ++G
Sbjct: 47  IIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLG 106

Query: 139 LQSNVFVGSAILDLYIK----LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDAL 194
              +++  +A++++Y K    LS + E  +   + +N   V             + +   
Sbjct: 107 FHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSV-------------KIDSVR 153

Query: 195 KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254
           KLF  MP R+VVSWN +I G +Q G  EEA+N+  EM +E L P+  TL   +      A
Sbjct: 154 KLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHA 213

Query: 255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
            +  GK  H  A++     DVF+G+SLI  YAKC  +E S+  F  L+ R+ ++WN++I 
Sbjct: 214 NVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIA 273

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLED 371
           G  QNGR ++ + FF RM    ++P  V+   ++ AC H   +  G   ++Y  +   +D
Sbjct: 274 GCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDD 333

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF-DPGIGFWKALLGGCQIHSN 424
              +     + ++D+ ++ G  K A+     +   D  +  W A++ GC +H +
Sbjct: 334 NKFIA----SSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGH 383



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 124/301 (41%), Gaps = 39/301 (12%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           NPN V  T  +     ++     +K  +  PH   ++W  +I  Y+  G    ++  F  
Sbjct: 14  NPNTVVPTCHV-----KQLHAQIVKTTKATPHS--LAWICIIKCYASHGLLRHSLASFNL 66

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK--- 287
           +   G+ P+    P  + A+       + +S HA  ++     D++  N+L++ Y+K   
Sbjct: 67  LRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHP 126

Query: 288 -------------------CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
                                 ++    +FD++  R++V+WN VI G AQNG  EEA+  
Sbjct: 127 HLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNM 186

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVD 385
            + M    +RP+  TL  +L        V KG   + Y  +   +    +     + ++D
Sbjct: 187 VKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIG----SSLID 242

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDV 443
           + ++  + + +    + L     I  W +++ GC  +   + G    RR+L   + P  V
Sbjct: 243 MYAKCTQVELSVCAFHLLSNRDAIS-WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQV 301

Query: 444 S 444
           S
Sbjct: 302 S 302


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 276/484 (57%), Gaps = 49/484 (10%)

Query: 53  SESDKFSSVHQVF-----DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           S+S  F +  ++F     + +P L+VV+ T +I  ++++    EA+ LF +M+     P+
Sbjct: 342 SQSGNFEAAFELFKNMRKENIP-LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 400

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKV----------GLQSNVFVGSAILDLYIKLS 157
             T  SV+ +  +L   + G ++HA++ K           G   ++ V +A++D+Y K  
Sbjct: 401 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
           S + A  +F+D                               +  RNVV+W  MIGG++Q
Sbjct: 461 SFKAARSIFDDI-----------------------------PLEERNVVTWTVMIGGHAQ 491

Query: 218 TGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKL 273
            G + +A+ LF+EM+ E  G+ PN  T+ C ++A A++AA+ +GK  HA  ++       
Sbjct: 492 YGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESS 551

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
             FV N LI  Y+KCG ++ +  VFD +++++ ++W +++ GY  +GRG EA++ F++MR
Sbjct: 552 AYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 611

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
             G  P+ +T L +L+AC+H G+V++G SYF     +     + EHYAC +DLL+RSGR 
Sbjct: 612 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRL 671

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
            +A   + D+P +P    W ALL  C++HSNVEL E A  +++ ++ E+  SY ++SN  
Sbjct: 672 DKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 731

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           + AG+W +V+ IR  MK+ G+ + PGCSW++ +     F  GDR+H ++ +IYA+L S  
Sbjct: 732 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 791

Query: 514 EQIR 517
           ++I+
Sbjct: 792 DRIK 795



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 178/413 (43%), Gaps = 93/413 (22%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           V + V     V    +I    KQ   + AI +  RML    RP  FT   V+ +   L  
Sbjct: 111 VLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPS 170

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G   H      G +SNVF+ +A++ +Y +  S+EEA+ +F++               
Sbjct: 171 YRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE--------------- 215

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML----------R 233
            + +   +D            V+SWN+++  + ++     A++LF +M           R
Sbjct: 216 -ITQRGIDD------------VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNER 262

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             ++   + LP    A  ++ A+   K  H  A++     DVFVGN+LI  YAKCG ME+
Sbjct: 263 SDIISIVNILP----ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMEN 318

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-------------------- 333
           ++ VF+ +  +++V+WNA++ GY+Q+G  E A E F+ MR                    
Sbjct: 319 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQ 378

Query: 334 ---------------INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKL------ 369
                           +G  PN VT++ +L AC   G   +G   ++Y  +  L      
Sbjct: 379 RGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDND 438

Query: 370 ---EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALLGG 418
              ED  ++    Y  ++D+ S+   FK A+    D+P +   +  W  ++GG
Sbjct: 439 FGGEDEDLMV---YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 488



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 143/302 (47%), Gaps = 22/302 (7%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           AL + + +     V WN +I  + + GR + A+N+   MLR G  P+H TLP  + A   
Sbjct: 108 ALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGE 167

Query: 253 IAALGMGKSFHA--CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER---NIV 307
           + +   G +FH   C   F  + +VF+ N+L++ Y++CGS+E++ ++FD++T+R   +++
Sbjct: 168 LPSYRCGSAFHGLICCNGF--ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 225

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRI------NGIRPNGVTLLGLLWACNHTGLVEKGY 361
           +WN+++  + ++     A++ F +M +         R + ++++ +L AC     V +  
Sbjct: 226 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 285

Query: 362 SYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
                A     G   P+ +    ++D  ++ G  + A +    + F   +  W A++ G 
Sbjct: 286 EVHGNAIRN--GTF-PDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS-WNAMVAGY 341

Query: 420 QIHSNVELGEFAARRILALD-PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
               N E      + +   + P DV ++  +    S  G      N+ R+M   G   +P
Sbjct: 342 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG--SLP 399

Query: 479 GC 480
            C
Sbjct: 400 NC 401



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +G  +++ Y  CG+ + +LLV +++T    V WN +I  + + GR + AI    RM   G
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 337 IRPNGVTLLGLLWAC 351
            RP+  TL  +L AC
Sbjct: 151 TRPDHFTLPHVLKAC 165


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 160/484 (33%), Positives = 276/484 (57%), Gaps = 49/484 (10%)

Query: 53  SESDKFSSVHQVF-----DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           S+S  F +  ++F     + +P L+VV+ T +I  ++++    EA+ LF +M+     P+
Sbjct: 349 SQSGNFEAAFELFKNMRKENIP-LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPN 407

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKV----------GLQSNVFVGSAILDLYIKLS 157
             T  SV+ +  +L   + G ++HA++ K           G   ++ V +A++D+Y K  
Sbjct: 408 CVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
           S + A  +F+D                               +  RNVV+W  MIGG++Q
Sbjct: 468 SFKAARSIFDDI-----------------------------PLEERNVVTWTVMIGGHAQ 498

Query: 218 TGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKL 273
            G + +A+ LF+EM+ E  G+ PN  T+ C ++A A++AA+ +GK  HA  ++       
Sbjct: 499 YGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESS 558

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
             FV N LI  Y+KCG ++ +  VFD +++++ ++W +++ GY  +GRG EA++ F++MR
Sbjct: 559 AYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 618

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
             G  P+ +T L +L+AC+H G+V++G SYF     +     + EHYAC +DLL+RSGR 
Sbjct: 619 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRL 678

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
            +A   + D+P +P    W ALL  C++HSNVEL E A  +++ ++ E+  SY ++SN  
Sbjct: 679 DKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 738

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           + AG+W +V+ IR  MK+ G+ + PGCSW++ +     F  GDR+H ++ +IYA+L S  
Sbjct: 739 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 798

Query: 514 EQIR 517
           ++I+
Sbjct: 799 DRIK 802



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 178/413 (43%), Gaps = 93/413 (22%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           V + V     V    +I    KQ   + AI +  RML    RP  FT   V+ +   L  
Sbjct: 118 VLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPS 177

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G   H      G +SNVF+ +A++ +Y +  S+EEA+ +F++               
Sbjct: 178 YRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDE--------------- 222

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML----------R 233
            + +   +D            V+SWN+++  + ++     A++LF +M           R
Sbjct: 223 -ITQRGIDD------------VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNER 269

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             ++   + LP    A  ++ A+   K  H  A++     DVFVGN+LI  YAKCG ME+
Sbjct: 270 SDIISIVNILP----ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMEN 325

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-------------------- 333
           ++ VF+ +  +++V+WNA++ GY+Q+G  E A E F+ MR                    
Sbjct: 326 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQ 385

Query: 334 ---------------INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKL------ 369
                           +G  PN VT++ +L AC   G   +G   ++Y  +  L      
Sbjct: 386 RGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDND 445

Query: 370 ---EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALLGG 418
              ED  ++    Y  ++D+ S+   FK A+    D+P +   +  W  ++GG
Sbjct: 446 FGGEDEDLMV---YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 495



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 143/302 (47%), Gaps = 22/302 (7%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           AL + + +     V WN +I  + + GR + A+N+   MLR G  P+H TLP  + A   
Sbjct: 115 ALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGE 174

Query: 253 IAALGMGKSFHA--CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER---NIV 307
           + +   G +FH   C   F  + +VF+ N+L++ Y++CGS+E++ ++FD++T+R   +++
Sbjct: 175 LPSYRCGSAFHGLICCNGF--ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 232

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRI------NGIRPNGVTLLGLLWACNHTGLVEKGY 361
           +WN+++  + ++     A++ F +M +         R + ++++ +L AC     V +  
Sbjct: 233 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 292

Query: 362 SYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
                A     G   P+ +    ++D  ++ G  + A +    + F   +  W A++ G 
Sbjct: 293 EVHGNAIRN--GTF-PDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS-WNAMVAGY 348

Query: 420 QIHSNVELGEFAARRILALD-PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
               N E      + +   + P DV ++  +    S  G      N+ R+M   G   +P
Sbjct: 349 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG--SLP 406

Query: 479 GC 480
            C
Sbjct: 407 NC 408



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +G  +++ Y  CG+ + +LLV +++T    V WN +I  + + GR + AI    RM   G
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 337 IRPNGVTLLGLLWAC 351
            RP+  TL  +L AC
Sbjct: 158 TRPDHFTLPHVLKAC 172


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 252/440 (57%), Gaps = 3/440 (0%)

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL--EDLNLGKQL 130
           +V  T+ + R+ +     EA   F+RM L  + P+  TF +++ +      E       L
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116

Query: 131 HAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           H +A K GL + +V VG+A++D+Y K + +  A +VF +    N VS+ TM+ G ++   
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            E A++LF EMP R+ +SW A+I G  + G +E+A+  F +M R G+  ++ ++   + A
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A++ AL +G   H   +    K ++ + NSLI  Y++CG +E +  VF K+ +R +V+W
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSW 296

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           N++I G+A NG  +E++EFF  M+  G +P+GV+  G L AC+H GLV KG   F   K 
Sbjct: 297 NSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKS 356

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
                 + EHY C+VDL  R+GR ++A   + ++P  P      +LL  C+ H +V L E
Sbjct: 357 VHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAE 416

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
              + +  LDPE  + YV+LSN  +  GKWD  +N+RR MK +G+ + PG S +EI  KV
Sbjct: 417 RLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKV 476

Query: 490 HVFVTGDRNHHMNDEIYAVL 509
           H FV GD  H   D IY++L
Sbjct: 477 HEFVAGDNYHADADNIYSML 496



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 64/295 (21%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FDE+P  + +S T +I    K  + E+A+  F +M    +     +  +V+ +   L 
Sbjct: 182 QLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLG 241

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LG  +H +      + N+ + ++++D+Y +   IE A +V                 
Sbjct: 242 ALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQV----------------- 284

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                         F +M  R +VSWN++I G++  G  +E++  F  M +EG  P+  +
Sbjct: 285 --------------FVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVS 330

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              A+ A ++   +  G             L++F                D++    K+T
Sbjct: 331 YTGALTACSHAGLVNKG-------------LELF----------------DNMKSVHKIT 361

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            R I  +  ++  Y + GR E+A+   E M    ++PN V L  LL AC   G V
Sbjct: 362 PR-IEHYGCIVDLYGRAGRLEDALNMIEEMP---MKPNEVVLGSLLAACRTHGDV 412


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 165/449 (36%), Positives = 262/449 (58%), Gaps = 38/449 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVVS T +I    +      A  LFSRM    + P++ T+ +++  S A    +   Q+H
Sbjct: 324 NVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEA----SFPPQIH 379

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   +    VG+A++  Y KL S EEA                             
Sbjct: 380 AQVIKTNYECTPTVGTALMVSYSKLCSTEEA----------------------------- 410

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
             L +F+ +  ++VVSW+AM+  Y+Q G    A N FI+M   GL PN  T+  AI A A
Sbjct: 411 --LSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACA 468

Query: 252 NIAA-LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           + AA + +G+ FHA ++K      + V ++L+S YA+ GS+E++  VF++ T+R++++WN
Sbjct: 469 SPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWN 528

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           +++ GYAQ+G  ++A++ F +M + GI  +G+T L ++  C H GLVE+G  YF    + 
Sbjct: 529 SMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYF-DLMVR 587

Query: 371 DPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
           D G+    +HYACMVDL SR+G+  E    +  +PF  G   W+ALLG C++H NVELG+
Sbjct: 588 DYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGK 647

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
            AA ++L+L+P D ++YV+LSN  S AGKW     +R+ M  K + +  GCSWI+IK+KV
Sbjct: 648 LAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKV 707

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           H F+  D++H ++++IYA LR+ T ++++
Sbjct: 708 HFFIASDKSHPLSEQIYAKLRAMTAKLKQ 736



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 166/343 (48%), Gaps = 41/343 (11%)

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +I    ++ D  LGKQLHA   + G    ++ VG++++D+Y+   S+ +  +VFE     
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFE----- 115

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                     G+LKR                NVV+W +++ GY Q G   + ++LF  M 
Sbjct: 116 ----------GMLKR----------------NVVTWTSLLTGYIQAGVLLDVMSLFFRMR 149

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            EG+ PN  T    +   A+   + +G+  HA ++KF     VFV NSL++ YAKCG +E
Sbjct: 150 AEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVE 209

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE--RMRINGIRPNGV-TLLGLLW 349
           ++ +VF ++  R++V+WN ++ G   NGR  EA++ F   R  I  +  +   T++ L  
Sbjct: 210 EARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCA 269

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
              H GL  + +S   +      G +       ++D  +++G+  +A +    +     +
Sbjct: 270 NLKHLGLARQLHSSVLKHGFHSYGNV----MTALMDAYNKAGQLDKALDVFLLMSGSQNV 325

Query: 410 GFWKALLGGCQIHSNVELGE--FAARRILALDPEDVSSYVMLS 450
             W A++ GC  + ++ L    F+  R   + P D++   +L+
Sbjct: 326 VSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT 368



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 140/287 (48%), Gaps = 32/287 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+ +   NVV+ T+++  + +     + + LF RM    + P+ FTF SV+    +  
Sbjct: 112 KVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQG 171

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            ++LG+ +HA + K G  S VFV ++++++Y K                          C
Sbjct: 172 MVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAK--------------------------C 205

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL+     E+A  +F  M  R++VSWN ++ G    GR+ EA+ LF +      +   ST
Sbjct: 206 GLV-----EEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTEST 260

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               I   AN+  LG+ +  H+  +K        V  +L+  Y K G ++ +L VF  ++
Sbjct: 261 YSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMS 320

Query: 303 -ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             +N+V+W A+I G  QNG    A   F RMR +G+ PN +T   +L
Sbjct: 321 GSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL 367



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 97/190 (51%), Gaps = 6/190 (3%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STALE 122
           +F  +   +VVS + ++  +A+      A   F +M +  ++P+EFT  S I + ++   
Sbjct: 413 IFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAA 472

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            ++LG+Q HA + K      + V SA++ +Y +  SIE A  VFE   + +++S+ +M+ 
Sbjct: 473 GVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLS 532

Query: 183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLV 237
           G  +    + AL +F++M    +    +++ ++I G +  G  EE    F  M+R+ G+ 
Sbjct: 533 GYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGIT 592

Query: 238 PNHSTLPCAI 247
           P      C +
Sbjct: 593 PTMDHYACMV 602


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 270/457 (59%), Gaps = 4/457 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F+E+ + ++VS + +I  + +   YEEA+ +F  M    +R  E    SV+ +   L 
Sbjct: 259 KLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLS 318

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +  GK +H    ++G++S V + +A++ +Y     I +A ++F  +HN + +S+ +MI 
Sbjct: 319 IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMIS 378

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G +K    E A  LF  MP +++VSW+A+I GY+Q     E + LF EM    + P+ + 
Sbjct: 379 GCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETI 438

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I A  ++AAL  GK  HA   K   K++V +G +L+  Y KCG +E++L VF+ + 
Sbjct: 439 LVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME 498

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+ + +WNA+I G A NG  E +++ F  M+ NG+ PN +T +G+L AC H GLV++G  
Sbjct: 499 EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRC 558

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           +F+ + +E  G ++P  +HY CMVDLL R+G   EA++ +  +P  P +  W ALLG C+
Sbjct: 559 HFA-SMIEKHG-IEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACK 616

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            H + E+GE   R+++ L P+    +V+LSN  +  G W++V  +R  MK++G+ + PGC
Sbjct: 617 KHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGC 676

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           S IE    VH F+ GD+ H   +++  +L    ++++
Sbjct: 677 SLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLK 713



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 213/450 (47%), Gaps = 74/450 (16%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FD + + N     T++  + + +  E+A+ L+  M+  N+ P  +T+  V+  + A+ 
Sbjct: 96  QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVV-QACAVR 154

Query: 123 DLNLG-KQLHAWATKVGLQSNVFVGSAILDLY---------------------------- 153
            L  G K++H    KVG  S+V+V + ++++Y                            
Sbjct: 155 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 214

Query: 154 ---IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
              +K   +EEA  +F+     N+V+  +MI  L K  +  +A KLF EM  +++VSW+A
Sbjct: 215 AGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSA 274

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK-- 268
           +I GY Q G  EEA+ +FIEM   G+  +   +   + A A+++ +  GK  H   ++  
Sbjct: 275 LISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMG 334

Query: 269 ---------------------------FLG--KLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                                      F G   LD    NS+IS   KCGS+E +  +FD
Sbjct: 335 IESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFD 394

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + E++IV+W+AVI GYAQ+    E +  F  M++  IRP+   L+ ++ AC H   +++
Sbjct: 395 VMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQ 454

Query: 360 G---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G   ++Y  +  L+   +L       ++D+  + G  + A E    +  + G+  W AL+
Sbjct: 455 GKWVHAYIRKNGLKVNVILG----TTLLDMYMKCGCVENALEVFNGME-EKGVSSWNALI 509

Query: 417 GGCQIHSNVE--LGEFAARRILALDPEDVS 444
            G  ++  VE  L  F+  +   + P +++
Sbjct: 510 IGLAVNGLVERSLDMFSEMKNNGVIPNEIT 539



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 141/321 (43%), Gaps = 77/321 (23%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AA 251
           +L++F  + + N   WN M+  Y Q+   E+A+ L+  M++  + P++ T P  + A A 
Sbjct: 94  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 153

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL---------------- 295
            +   G GK  H   +K     DV+V N+LI+ YA CG+M D+                 
Sbjct: 154 RLLEFG-GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNS 212

Query: 296 ---------------LVFDKLTERNI-------------------------------VTW 309
                          L+FD++ +RNI                               V+W
Sbjct: 213 ILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSW 272

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQ 366
           +A+I GY QNG  EEA+  F  M  NG+R + V ++ +L AC H  +V+ G   +    +
Sbjct: 273 SALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR 332

Query: 367 AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
             +E    L+      ++ + S SG   +A++ L++   +     W +++ GC    +VE
Sbjct: 333 MGIESYVNLQN----ALIHMYSGSGEIMDAQK-LFNGSHNLDQISWNSMISGCMKCGSVE 387

Query: 427 LGEFAARRILALDPE-DVSSY 446
                AR +  + PE D+ S+
Sbjct: 388 ----KARALFDVMPEKDIVSW 404



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 17/209 (8%)

Query: 274 DVFVGNSLISFYAKCG--SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           D F  + L+ F        ++ SL +FD++   N   WN ++  Y Q+   E+A+  ++ 
Sbjct: 72  DTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKL 131

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           M  N + P+  T   ++ AC    L+E G        L+            ++++ +  G
Sbjct: 132 MVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCG 190

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE-----LGEFAARRILALDPEDVSSY 446
             ++A++   + P    +  W ++L G     +VE       +   R I+A +    S  
Sbjct: 191 NMRDARKLFDESPVLDSVS-WNSILAGYVKKGDVEEAKLIFDQMPQRNIVASN----SMI 245

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           V+L     V   W     +  EM EK M 
Sbjct: 246 VLLGKMGQVMEAW----KLFNEMDEKDMV 270


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 245/448 (54%), Gaps = 31/448 (6%)

Query: 71  LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            + V  TT+I  +      +EA+  F  ++   ++P+  TF S+ P+   L  LNLGK+L
Sbjct: 324 FDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKEL 383

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           H    K  L     VGSAILD+Y K                          CG     R 
Sbjct: 384 HGSIIKTKLDEKCHVGSAILDMYAK--------------------------CG-----RL 412

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
           + A ++F  +  ++ + WN+MI   SQ GR  EA+NLF +M  EG   +  ++  A+ A 
Sbjct: 413 DLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSAC 472

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           AN+ AL  GK  H   +K   + D++  +SLI  YAKCG++  S  VFD++ E+N V+WN
Sbjct: 473 ANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWN 532

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I  Y  +G  +E +  F  M  NGI+P+ VT LG++ AC H G V++G  Y+     E
Sbjct: 533 SIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEE 592

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
                + EHYAC+ D+  R+GR  EA E +  +PF P  G W  LLG C IH NVEL E 
Sbjct: 593 YGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEV 652

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
           A++ +  LDP +   YV+L+N  + AGKW  V  +R  MKE+G+ +VPG SWIE+ +  H
Sbjct: 653 ASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATH 712

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +FV  D +H +  +IY+VL S   ++++
Sbjct: 713 MFVAADGSHPLTAQIYSVLDSLLLELKK 740



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 132/274 (48%), Gaps = 31/274 (11%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  F     +  A+  + +ML   + P ++TF  V+ +   L+ + +GK +H     +G
Sbjct: 29  MIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMG 88

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+ +VFVGS+++ LY             E+ H                     DA  LF 
Sbjct: 89  LKEDVFVGSSLIKLYA------------ENGH-------------------LSDAQYLFD 117

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            +P ++ V WN M+ GY + G +  A+ +F+EM    + PN  T  C +   A+ A L +
Sbjct: 118 NIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDL 177

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G   H  AV    +LD  V N+L++ Y+KC  ++ +  +FD L + ++V+WN +I GY Q
Sbjct: 178 GTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQ 237

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           NG   EA   F  M   GI+P+ +T    L   N
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN 271



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 127/292 (43%), Gaps = 31/292 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E+   S    +FD +P  + V    ++  + K      AI +F  M    I+P+  TF 
Sbjct: 104 AENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFA 163

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+    +   L+LG QLH  A   GL+ +  V + +L +Y K                 
Sbjct: 164 CVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSK----------------- 206

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    C  L+  R     KLF  +P  ++VSWN +I GY Q G   EA +LF  M+
Sbjct: 207 ---------CQCLQAAR-----KLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMI 252

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G+ P+  T    +     + +L   K  H   ++    LDVF+ ++LI  Y KC  +E
Sbjct: 253 SAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVE 312

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
            +     + +  + V    +I GY  NG+ +EA+E F  +    ++P  VT 
Sbjct: 313 MAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTF 364



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 95/172 (55%), Gaps = 2/172 (1%)

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            +DA  LF  +      +WN MI G++  G+   A+  +++ML  G+ P+  T P  + A
Sbjct: 8   LKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKA 67

Query: 250 AANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
              + ++ MGK  H   V  +G K DVFVG+SLI  YA+ G + D+  +FD + +++ V 
Sbjct: 68  CCGLKSVKMGKIVHE-TVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVL 126

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           WN ++ GY +NG    AI+ F  MR + I+PN VT   +L  C    +++ G
Sbjct: 127 WNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLG 178



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 4/180 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+ + + + +   ++I   ++     EAI LF +M +   R    +    + +   L 
Sbjct: 417 RVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLP 476

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L+ GK++H    K  L+S+++  S+++D+Y K  ++  + RVF+     N VS+ ++I 
Sbjct: 477 ALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIIS 536

Query: 183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                   ++ L LF EM    +    V++  +I      G+ +E +  +  M  E  +P
Sbjct: 537 AYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIP 596



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y + GS++D+  +F  L       WN +I G+   G+   A+ F+ +M   G+ P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLY 401
              ++ AC     V+ G        L     LK + +  + ++ L + +G   +A+    
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMG---LKEDVFVGSSLIKLYAENGHLSDAQYLFD 117

Query: 402 DLPFDPGIGFWKALLGG 418
           ++P    +  W  +L G
Sbjct: 118 NIPQKDSV-LWNVMLNG 133


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 250/446 (56%), Gaps = 37/446 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++   + VS   II    +     + + LF  ML   + P +FT+GSV+ +    + 
Sbjct: 397 IFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQA 456

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN G ++H    K G+  + FVGSA++D+Y K                          CG
Sbjct: 457 LNYGMEIHGRIVKSGMGLDWFVGSALVDMYGK--------------------------CG 490

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           +L      +A K+   +  +  VSWN++I G+S   ++E A   F +ML  G++P++ T 
Sbjct: 491 MLM-----EAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTY 545

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN+A + +GK  HA  +K     DV++ ++L+  Y+KCG+M+DS L+F+K  +
Sbjct: 546 ATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPK 605

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+ VTW+A+IC YA +G GE+AI+ FE M++  ++PN    + +L AC H G V+KG  Y
Sbjct: 606 RDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHY 665

Query: 364 FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F   +     DP M   EHY+CMVDLL RS +  EA + +  + F+     W+ LL  C+
Sbjct: 666 FQIMQSHYGLDPHM---EHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCK 722

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +  NVE+ E A   +L LDP+D S+YV+L+N  +  G W  V+ IR  MK   + + PGC
Sbjct: 723 MQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGC 782

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIY 506
           SWIE++ +VH F+ GD+ H  ++EIY
Sbjct: 783 SWIEVRDEVHTFLVGDKAHPRSEEIY 808



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 148/289 (51%), Gaps = 31/289 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD +P+ +VVS  +++  +       ++I +F RM  L I     TF  V+ + + +ED
Sbjct: 94  LFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIED 153

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             LG Q+H  A ++G +++V  GSA++D+Y K                            
Sbjct: 154 YGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC--------------------------- 186

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
               ++ + A ++F+EMP RN+V W+A+I GY Q  R  E + LF +ML+ G+  + ST 
Sbjct: 187 ----KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTY 242

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                + A ++A  +G   H  A+K     D  +G + +  YAKC  M D+  VF+ L  
Sbjct: 243 ASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPN 302

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
               ++NA+I GYA+  +G +A+E F+ ++   +  + ++L G L AC+
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACS 351



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 152/310 (49%), Gaps = 1/310 (0%)

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           +FTF  ++   + L+ LN GKQ HA          ++V + ++  Y K S++  A +VF+
Sbjct: 6   KFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
              + +V+S+ TMI G  +      A  LF  MP R+VVSWN+++  Y   G N +++ +
Sbjct: 66  RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F+ M    +  +++T    + A + I   G+G   H  A++   + DV  G++L+  Y+K
Sbjct: 126 FVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C  ++ +  +F ++ ERN+V W+AVI GY QN R  E ++ F+ M   G+  +  T   +
Sbjct: 186 CKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
             +C      + G      A   D         A + D+ ++  R  +A +    LP  P
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATL-DMYAKCDRMSDAWKVFNTLPNPP 304

Query: 408 GIGFWKALLG 417
              +   ++G
Sbjct: 305 RQSYNAIIVG 314



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 183/402 (45%), Gaps = 41/402 (10%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T ++   ++ D+ S   +VF+ +P+    S   II  +A+Q    +A+ +F  +    
Sbjct: 276 IGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTY 335

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +   E +    + + + ++    G QLH  A K GL  N+ V + ILD+Y K  ++ EA 
Sbjct: 336 LSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEAC 395

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            +F+D                               M  R+ VSWNA+I  + Q     +
Sbjct: 396 TIFDD-------------------------------MERRDAVSWNAIIAAHEQNEEIVK 424

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            ++LF+ MLR  + P+  T    + A A   AL  G   H   VK    LD FVG++L+ 
Sbjct: 425 TLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVD 484

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG + ++  + D+L E+  V+WN++I G++   + E A  +F +M   G+ P+  T
Sbjct: 485 MYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFT 544

Query: 344 LLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFL 400
              +L  C +   +E G    +Q  KL     L  + Y  + +VD+ S+ G  ++++   
Sbjct: 545 YATVLDVCANMATIELGKQIHAQILKLN----LHSDVYIASTLVDMYSKCGNMQDSRLMF 600

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDP 440
              P    +  W A++     H + E  +  F   ++L + P
Sbjct: 601 EKTPKRDYVT-WSAMICAYAYHGHGEQAIKLFEEMQLLNVKP 641


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 174/480 (36%), Positives = 259/480 (53%), Gaps = 39/480 (8%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  VS G   D      ++FDE+P  +VVS   +I  + +   +EEA+  F+RM   
Sbjct: 198 ALITGYVSEGHVDD----ARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA 253

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           ++ P++ T  SV+ +   L  L LGK + +W    G   N+ + +A++D+Y K       
Sbjct: 254 DVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSK------- 306

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG +   R     KLF  M  ++V+ WN MIGGY      E
Sbjct: 307 -------------------CGEIGTAR-----KLFDGMEDKDVILWNTMIGGYCHLSLYE 342

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL----DVFVG 278
           EA+ LF  MLRE + PN  T    + A A++ AL +GK  HA   K L       +V + 
Sbjct: 343 EALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLW 402

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
            S+I  YAKCG +E +  VF  +  R++ +WNA+I G A NG  E A+  FE M   G +
Sbjct: 403 TSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQ 462

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           P+ +T +G+L AC   G VE G+ YFS    +     K +HY CM+DLL+RSG+F EAK 
Sbjct: 463 PDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKV 522

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
            + ++  +P    W +LL  C+IH  VE GE+ A R+  L+PE+  +YV+LSN  + AG+
Sbjct: 523 LMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGR 582

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           WD+V+ IR ++ +KGM +VPGC+ IEI   VH F+ GD+ H  ++ I+ +L      + E
Sbjct: 583 WDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEE 642



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 208/409 (50%), Gaps = 11/409 (2%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S   S  H +  + P  N+    T+I   +       +++LFS+ML   + P+  TF S+
Sbjct: 76  SYALSLFHSIHHQPP--NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSL 133

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
             S    +  +  KQLHA A K+ L  +  V ++++ +Y ++  +  A  VF+ +   + 
Sbjct: 134 FKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDA 193

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           VS+T +I G +     +DA +LF E+P ++VVSWNAMI GY Q+GR EEA+  F  M   
Sbjct: 194 VSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA 253

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAV-KFLGKLDVFVGNSLISFYAKCGSMED 293
            + PN ST+   + A  ++ +L +GK   +    +  GK ++ + N+L+  Y+KCG +  
Sbjct: 254 DVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGK-NLQLVNALVDMYSKCGEIGT 312

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +FD + +++++ WN +I GY      EEA+  FE M    + PN VT L +L AC  
Sbjct: 313 ARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACAS 372

Query: 354 TGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            G ++ G   ++Y  +       +     +  ++ + ++ G  + A++    +     + 
Sbjct: 373 LGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMG-SRSLA 431

Query: 411 FWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            W A++ G  ++ + E  LG F         P+D+ ++V + +A + AG
Sbjct: 432 SWNAMISGLAMNGHAERALGLFEEMINEGFQPDDI-TFVGVLSACTQAG 479


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 168/478 (35%), Positives = 262/478 (54%), Gaps = 24/478 (5%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +P  NVVS  T++  +A      +A  LF RM + +         +++ S +  + 
Sbjct: 127 LFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKA 186

Query: 124 LNL-----GKQLHAWATKV-GL-----------------QSNVFVGSAILDLYIKLSSIE 160
             L      + + AW T V G+                 + NV   +A++  Y +   I+
Sbjct: 187 RELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRID 246

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
           EA  +F      ++ S   M+ G ++ +  + A +LF EMP RNVV+W  M+ GY +  +
Sbjct: 247 EALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQ 306

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
           +E A+ LF  ML  G  PN  T   A+ A +++AAL  GK  H    K   + D FV ++
Sbjct: 307 SELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESA 366

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L++ YAKCG +  +  +FD   E+++++WN +I  YA +G G EAI  +E+M+ NG RPN
Sbjct: 367 LMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPN 426

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            VT + LL AC+H+GLV++G   F     +    ++ EHY C++DL SR+GR  +AK  +
Sbjct: 427 DVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLI 486

Query: 401 YDLPFDPGIG-FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + L   P  G  W ALLGGC  H N  +G  AAR +L  +P++  +Y +LSN  + AGKW
Sbjct: 487 HYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKW 546

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
              + IR EM  +G+ + PGCSWIE+ +KVHVFV  D++H  +D IY +L++    +R
Sbjct: 547 KEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHHMMR 604



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 15/211 (7%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           +V   +A++  Y +   + +A  +F+      NVV++T ++ G  +    ++A  LFQ M
Sbjct: 72  DVVSWTALVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRM 131

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
           P RNVVSWN M+  Y+  GR  +A  LF  M      P        I+ A  + +  + K
Sbjct: 132 PQRNVVSWNTMLEAYAAAGRVGDACALFDRM------PVRDAGSWNILLATLVRSGSVDK 185

Query: 261 SFHACAVKFLGKL---DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
                A +  G++   DV    +++   A+ G ++++ ++FD + ERN+V+WNA+I GY 
Sbjct: 186 -----ARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYT 240

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           +N R +EA++ F +M    I    + + G +
Sbjct: 241 RNHRIDEALDLFMKMPERDIASCNIMVTGFI 271



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 137/321 (42%), Gaps = 61/321 (19%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD  PD +VVS T ++  +A++    +A  LF R                 P +    
Sbjct: 63  KLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDR-----------------PDA---- 101

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
                            + NV   +A+L  Y +   ++EA  +F+     NVVS+ TM+ 
Sbjct: 102 -----------------RRNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLE 144

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM----------- 231
                 R  DA  LF  MP R+  SWN ++    ++G  ++A  LF  M           
Sbjct: 145 AYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPERDVMAWTTM 204

Query: 232 ----LREGLVPN----HSTLPCAIIAAANIAALGMGKSFHAC-AVKFLGKL---DVFVGN 279
                R G V        ++P   + + N    G  ++     A+    K+   D+   N
Sbjct: 205 VDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCN 264

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
            +++ + +   ++ +  +FD++ ERN+VTW  ++ GY +  + E A+  F  M + G RP
Sbjct: 265 IMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRP 324

Query: 340 NGVTLLGLLWACNHTGLVEKG 360
           N VT LG L AC+    + +G
Sbjct: 325 NQVTFLGALDACSDLAALCEG 345



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 126/277 (45%), Gaps = 38/277 (13%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ++       ++FDE+P+ NVV+ TT++  + K    E A+ LFS ML+   RP++ TF  
Sbjct: 272 QNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLG 331

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + + + L  L  GKQ+H    K   Q + FV SA++++Y K   I  A ++F+      
Sbjct: 332 ALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFD------ 385

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                      L RE              ++++SWN +I  Y+  G   EA+ L+ +M  
Sbjct: 386 -----------LSRE--------------KDLISWNGIIAAYAHHGVGIEAILLYEKMQE 420

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV--KFLGKLDVFVGNSLISFYAKCGSM 291
            G  PN  T    + A ++   +  G       V  + +   D      LI   ++ G +
Sbjct: 421 NGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHY-TCLIDLCSRAGRL 479

Query: 292 EDS--LLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           +D+  L+ + K+   +   W+A++ G   N  G E+I
Sbjct: 480 DDAKRLIHYLKIKPASGSVWSALLGGC--NAHGNESI 514



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 55/268 (20%)

Query: 153 YIKLSSIEEATRV--FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
           Y+   S+  A+     E +H+PN      +I  L    R  DA KLF   P  +VVSW A
Sbjct: 24  YVSYGSMGAASAAVGLEQSHDPN-----RLIAELAAAGRVWDARKLFDGTPDWDVVSWTA 78

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           ++  Y++ G   +A  LF         P+                               
Sbjct: 79  LVSAYARRGMLRDARELFDR-------PD------------------------------- 100

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            + +V    +L+S YA+   ++++  +F ++ +RN+V+WN ++  YA  GR  +A   F+
Sbjct: 101 ARRNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFD 160

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
           RM +       + L  L+     +G V+K    F +    D        +  MVD ++RS
Sbjct: 161 RMPVRDAGSWNILLATLV----RSGSVDKARELFGRMPERD-----VMAWTTMVDGVARS 211

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           G+  EA+     +P +  +  W A++ G
Sbjct: 212 GKVDEARVLFDSMP-ERNVVSWNAMISG 238



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 27/229 (11%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N LI+  A  G + D+  +FD   + ++V+W A++  YA+ G   +A E F+R      R
Sbjct: 46  NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDR---PDAR 102

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
            N VT   LL       LV++  + F +    +        +  M++  + +GR  +A  
Sbjct: 103 RNVVTWTALLSGYARARLVDEAEALFQRMPQRN-----VVSWNTMLEAYAAAGRVGDACA 157

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAG 457
               +P     G W  LL       +V+     AR +    PE DV ++  + + ++ +G
Sbjct: 158 LFDRMPVRDA-GSWNILLATLVRSGSVD----KARELFGRMPERDVMAWTTMVDGVARSG 212

Query: 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG-DRNHHMNDEI 505
           K D    +   M E+ +      SW       +  ++G  RNH +++ +
Sbjct: 213 KVDEARVLFDSMPERNVV-----SW-------NAMISGYTRNHRIDEAL 249


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 163/448 (36%), Positives = 259/448 (57%), Gaps = 36/448 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVVS T II    +      A+ LFSRM    + P+EFT+ +++ +S ++    L  Q+H
Sbjct: 368 NVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIH 423

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   Q   FVG+A+L  Y K  S E                               
Sbjct: 424 AQVIKTNYQHIPFVGTALLASYSKFGSTE------------------------------- 452

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           DAL +F+ +  ++VV+W+AM+  ++Q G  E A  LF +M  +G+ PN  T+   I A A
Sbjct: 453 DALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512

Query: 252 NIAA-LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
             +A +  G+ FHA ++K+     + V ++L+S Y++ G+++ + +VF++ T+R++V+WN
Sbjct: 513 CPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWN 572

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I GYAQ+G   +AIE F +M  +GI+ +GVT L ++  C H GLV +G  YF     +
Sbjct: 573 SMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRD 632

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
                  EHYACMVDL SR+G+  E    + D+PF  G   W+ LLG C++H NVELG+F
Sbjct: 633 HKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKF 692

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
           +A ++L+L+P D S+YV+LSN  + AGKW     +R+ M  + + +  GCSWI+IK+KVH
Sbjct: 693 SADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVH 752

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            F+  D++H M+D+IY  L+    ++++
Sbjct: 753 SFIAFDKSHPMSDQIYKKLKVIITRLKQ 780



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 150/303 (49%), Gaps = 36/303 (11%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           + CGS  +      +VF+ +P  NVV+ T+++   A    + E + LF RM    I P+ 
Sbjct: 146 MKCGSVCEGI----EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNP 201

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF SV+ +  +   L+LG+++HA + K G +S+VFV ++++++Y K   +E+A  VF  
Sbjct: 202 FTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNW 261

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               ++VS+ T++ GL   E   +AL+LF E          A +G  +Q           
Sbjct: 262 METRDMVSWNTLMAGLQLNECELEALQLFHES--------RATMGKMTQ----------- 302

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
                       ST    I   AN+  L + +  H+C +K    L   V  +L   Y+KC
Sbjct: 303 ------------STYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 289 GSMEDSLLVFDKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           G + D+L +F   T  RN+V+W A+I G  QNG    A+  F RMR + + PN  T   +
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 348 LWA 350
           L A
Sbjct: 411 LKA 413



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 172/395 (43%), Gaps = 36/395 (9%)

Query: 65  FDEVPDLNV-VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
            DE+P  +  V A  ++  +A++    E +  FS      +     T   V+ +  ++ D
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114

Query: 124 LNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             LG+QLH    K G  +  V  G++++D+Y+K  S+ E   VFE               
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEG-------------- 160

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            MP +NVV+W +++ G +    + E + LF  M  EG+ PN  T
Sbjct: 161 -----------------MPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFT 203

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A A+  AL +G+  HA +VKF  +  VFV NSL++ YAKCG +ED+  VF+ + 
Sbjct: 204 FASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME 263

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R++V+WN ++ G   N    EA++ F   R    +    T   ++  C +   +     
Sbjct: 264 TRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ 323

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
             S   L+    L       + D  S+ G   +A            +  W A++ GC  +
Sbjct: 324 LHS-CVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382

Query: 423 SNVELGE--FAARRILALDPEDVSSYVMLSNALSV 455
            ++ L    F+  R   + P + +   ML  +LS+
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI 417



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 9/188 (4%)

Query: 52  GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           GS  D  S    +F  +   +VV+ + ++   A+    E A YLF++M +  I+P+EFT 
Sbjct: 449 GSTEDALS----IFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTI 504

Query: 112 GSVIPS-STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
            SVI + +     ++ G+Q HA + K      + V SA++ +Y +  +I+ A  VFE   
Sbjct: 505 SSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQT 564

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVN 226
           + ++VS+ +MI G  +      A++ F++M    +    V++ A+I G +  G   E   
Sbjct: 565 DRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQ 624

Query: 227 LFIEMLRE 234
            F  M+R+
Sbjct: 625 YFDSMVRD 632


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  311 bits (796), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 273/487 (56%), Gaps = 26/487 (5%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +     ++F+ +P  NVVS  T+I  + K    ++AI +F RM   N+        +++ 
Sbjct: 53  RIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQ 112

Query: 117 SSTALE-----DLNLGKQLHAWATKV-GL-----------------QSNVFVGSAILDLY 153
                E     D    + + +W T V GL                 + NV   +A++  Y
Sbjct: 113 CGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGY 172

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
            K   ++EA  +FE     N+ S+ TMI G ++      A K+F EMP +NVVSW  MI 
Sbjct: 173 AKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMIT 232

Query: 214 GYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
           GY Q G +E A+ +F+EM+++G   PN  T    + A +++A LG G+  H    K + +
Sbjct: 233 GYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQ 292

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
              FV ++L++ Y+KCG +  +  +FD   +++R++V WN +I  YA +G G EAIE FE
Sbjct: 293 DRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFE 352

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            M+  G +PN V+ + LL AC+H GLV++G +YF +   ++   L+ +H+AC+VDL  R+
Sbjct: 353 DMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRA 412

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450
           GR KEA +F+  L        W  LL GC  H ++E+G+ AA+ +   DPE+  +Y++LS
Sbjct: 413 GRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLS 472

Query: 451 NALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           N  +   KW   S +R +MKEKG+ + PGCSWIE+ ++VHVF+  D++H+ ++ IY+++ 
Sbjct: 473 NIYASGRKWREASRVRLKMKEKGLKKQPGCSWIEVGNRVHVFLARDKSHYQSNLIYSLVH 532

Query: 511 SCTEQIR 517
               +++
Sbjct: 533 DIHAEMK 539



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 173/356 (48%), Gaps = 43/356 (12%)

Query: 136 KVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALK 195
           +V    +V   +A+L  Y++L  IEEA R+FE     NVVS+ TMI G  K    + A++
Sbjct: 31  RVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIE 90

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA---- 251
           +F+ M  RN+VSWNA+I    Q GR EEA   F EM +  ++ + +T+   +  +     
Sbjct: 91  VFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVI-SWTTMVMGLARSGRVDE 149

Query: 252 -----------NIAALGMGKSFHACAVKFLGKLDVF---------VGNSLISFYAKCGSM 291
                      N+ +     + +A  ++     D+F           N++I+ + + G +
Sbjct: 150 ARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGEL 209

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE-FFERMRINGIRPNGVTLLGLLWA 350
             +  VF+++ E+N+V+W  +I GY Q G  E A++ F E ++  G RPN  T + +L A
Sbjct: 210 AWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGA 269

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C+    + +G   +   S++  +D   +     + ++++ S+ G    A++   D+    
Sbjct: 270 CSDMAGLGEGQQVHLLISKSVYQDRTFVA----SALLNMYSKCGELSIARKIFDDVVISQ 325

Query: 408 -GIGFWKALLG-----GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
             +  W  ++      GC + + +EL  F   + L   P DV SYV L +A S AG
Sbjct: 326 RDLVLWNGMIAAYAHHGCGMEA-IEL--FEDMQGLGFKPNDV-SYVELLSACSHAG 377



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 141/287 (49%), Gaps = 26/287 (9%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNVVSYTTMICGLLKRERFEDALKLFQ 198
           + +V   +A++  YIK   I +A R+F+      +VV++T M+ G ++ +R E+A +LF+
Sbjct: 3   ERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFE 62

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            MP +NVVSWN MI GY +    ++A+ +F  M    +V  ++           IAAL  
Sbjct: 63  VMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAV----------IAALVQ 112

Query: 259 GKSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
                    +F  + K DV    +++   A+ G ++++  VFD++ ERN+V+WNA++ GY
Sbjct: 113 CGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGY 172

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376
           A+N R +EA + FERM    +           W    TG ++ G   +++    +     
Sbjct: 173 AKNMRLDEAFDLFERMPERNLSS---------WNTMITGFIQNGELAWARKVFNEMPEKN 223

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFD----PGIGFWKALLGGC 419
              +  M+    + G  + A +   ++  D    P  G +  +LG C
Sbjct: 224 VVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGAC 270



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 123/283 (43%), Gaps = 32/283 (11%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  R+VV+W A+I GY + G   +A  LF  +     V   + +    +    I      
Sbjct: 1   MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEE--AE 58

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           + F    VK     +V   N++I  Y K   ++ ++ VF+++ ERN+V+WNAVI    Q 
Sbjct: 59  RLFEVMPVK-----NVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQC 113

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
           GR EEA   F+ M    +      ++GL      +G V++    F +          PE 
Sbjct: 114 GRVEEARRRFDEMPKRDVISWTTMVMGLA----RSGRVDEARKVFDRM---------PER 160

Query: 380 ----YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA-ARR 434
               +  MV   +++ R  EA +    +P +  +  W  ++ G      ++ GE A AR+
Sbjct: 161 NVVSWNAMVTGYAKNMRLDEAFDLFERMP-ERNLSSWNTMITGF-----IQNGELAWARK 214

Query: 435 ILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           +    PE +V S+  +       G+ ++   +  EM + G  R
Sbjct: 215 VFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGAR 257


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 267/476 (56%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P I++  ++  +   +      +FD++   +VV+   +I  +++  HY+  + L+  M  
Sbjct: 151 PFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKT 210

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
               P      +V+ +     +L+ GK +H +    G +    + ++++++Y    ++  
Sbjct: 211 SGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHL 270

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           A  V++   + ++V  T M+ G  K    +DA  +F  M  +++V W+AMI GY+++ + 
Sbjct: 271 AREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQP 330

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
            EA+ LF EM R  +VP+  T+   I A AN+ AL   K  H  A K      + + N+L
Sbjct: 331 LEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNAL 390

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I  YAKCG++  +  VF+ +  +N+++W+++I  +A +G  + AI  F RM+   I PNG
Sbjct: 391 IDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNG 450

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
           VT +G+L+AC+H GLVE+G  +FS    E     + EHY CMVDL  R+   ++A E + 
Sbjct: 451 VTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIE 510

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
            +PF P +  W +L+  CQ H  +ELGEFAA R+L L+P+   + V+LSN  +   +WD+
Sbjct: 511 TMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDD 570

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           V  +R+ MK KG+++   CS IE+ ++VHVF+  DR H  +DEIY  L +   Q++
Sbjct: 571 VGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLK 626



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 180/374 (48%), Gaps = 23/374 (6%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +P+     +  ++ +F++    E  + L+  +         F+F  ++ + + L  
Sbjct: 71  LFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSA 130

Query: 124 LNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           LNLG ++H  A+K G   ++ F+ SA++ +Y     I +A  +F+   + +VV++  MI 
Sbjct: 131 LNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMID 190

Query: 183 GLLKRERFEDALKLFQEMPHR----------NVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           G  +   ++  LKL++EM              V+S  A  G  S      +A++ FI+  
Sbjct: 191 GYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYG----KAIHQFIK-- 244

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G           +   AN  A+ + +  +      L    + V  +++S YAK G ++
Sbjct: 245 DNGFRVGSHIQTSLVNMYANCGAMHLAREVY----DQLPSKHMVVSTAMLSGYAKLGMVQ 300

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+  +FD++ E+++V W+A+I GYA++ +  EA++ F  M+   I P+ +T+L ++ AC 
Sbjct: 301 DARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACA 360

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           + G + +     + A     G   P + A ++D+ ++ G   +A+E   ++P    I  W
Sbjct: 361 NVGALVQAKWIHTYADKNGFGRTLPINNA-LIDMYAKCGNLVKAREVFENMPRKNVIS-W 418

Query: 413 KALLGGCQIHSNVE 426
            +++    +H + +
Sbjct: 419 SSMINAFAMHGDAD 432



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 111/214 (51%), Gaps = 4/214 (1%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           AL LF  +P+      N ++  +S+    E  ++L++ + R G   +  + P  + A + 
Sbjct: 68  ALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSK 127

Query: 253 IAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           ++AL +G   H  A KF     D F+ ++LI+ YA CG + D+  +FDK++ R++VTWN 
Sbjct: 128 LSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNI 187

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I GY+QN   +  ++ +E M+ +G  P+ + L  +L AC H G +  G +      ++D
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAI--HQFIKD 245

Query: 372 PGMLKPEH-YACMVDLLSRSGRFKEAKEFLYDLP 404
            G     H    +V++ +  G    A+E    LP
Sbjct: 246 NGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLP 279


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 175/524 (33%), Positives = 283/524 (54%), Gaps = 51/524 (9%)

Query: 38  KLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97
           K+++  I T  V+  +     S     FD++P  +V +  ++I  +    H+ EAI  F 
Sbjct: 47  KVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFY 106

Query: 98  RMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL 156
           ++LL++ IRP  +TF  V+ +   L D   G+++H WA K+G Q NVFV ++++ +Y + 
Sbjct: 107 QLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRF 163

Query: 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDAL---------------------- 194
                A  +F+D    ++ S+  MI GL++      AL                      
Sbjct: 164 GFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSIL 223

Query: 195 -----------------KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE--G 235
                            K+F+ +P ++V+SWN +I GY+Q G   EA+ ++ +M+ E   
Sbjct: 224 PVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKE 282

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           ++PN  T    + A A++ AL  G   H   +K    LDVFV   LI  Y KCG + D++
Sbjct: 283 IIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAM 342

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +F ++ + + VTWNA+I  +  +G  E+ ++ F  M   G++P+ VT + LL AC+H+G
Sbjct: 343 SLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 402

Query: 356 LVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            VE+G   F   +L     +KP  +HY CMVDLL R+G  + A +F+ D+P  P    W 
Sbjct: 403 FVEEGKWCF---RLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWG 459

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALLG C+IH N+ELG+FA+ R+  +D ++V  YV+LSN  +  GKW+ V  +R   +E+G
Sbjct: 460 ALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERG 519

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + + PG S IE+  KV VF TG+++H    EIY  LR  T +++
Sbjct: 520 LKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMK 563



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 6/162 (3%)

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
             K  HA  V       +F+   L++ YA  G +  S   FD++ ++++  WN++I  Y 
Sbjct: 34  FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 318 QNGRGEEAIE-FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376
            NG   EAI  F++ + ++ IRP+  T   +L AC       K + +  +   +    + 
Sbjct: 94  HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVA 153

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               A ++ + SR G    A+    D+PF   +G W A++ G
Sbjct: 154 ----ASLIHMYSRFGFTGIARSLFDDMPFRD-MGSWNAMISG 190


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 160/437 (36%), Positives = 253/437 (57%), Gaps = 35/437 (8%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+ +P  +V+  + +I R+A+ +  E+A  LF R++  ++ P+E++  SV+ + T +  L
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 380

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           + GKQ+H  A K+G +S++FVG+A++D Y K + ++ +                      
Sbjct: 381 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSS---------------------- 418

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                    LK+F  +   N VSWN ++ G+SQ+G  EEA+++F EM    +     T  
Sbjct: 419 ---------LKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYS 469

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + A A+ A++      H    K     D  +GNSLI  YAKCG + D+L VF  L ER
Sbjct: 470 SVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMER 529

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           +I++WNA+I GYA +G+  +A+E F+RM  + +  N +T + LL  C+ TGLV  G S F
Sbjct: 530 DIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLF 589

Query: 365 SQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              ++ D G +KP  EHY C+V LL R+GR  +A +F+ D+P  P    W+ALL  C IH
Sbjct: 590 DSMRI-DHG-IKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH 647

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            NV LG F+A +IL ++P+D ++YV+LSN  + AG  D V+ +R+ M+  G+ +VPG SW
Sbjct: 648 KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSW 707

Query: 483 IEIKSKVHVFVTGDRNH 499
           +EIK ++H F  G  +H
Sbjct: 708 VEIKGEIHAFSVGSVDH 724



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 151/310 (48%), Gaps = 31/310 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +S  ++FD +P+ N+VS  T++   A++  +E A  LF R+       ++F   +++  
Sbjct: 112 LASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKL 171

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           + A++   L   +H+ A K+G   N FVGS ++D Y   S + +A  VF           
Sbjct: 172 AIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFN---------- 221

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                G+++++                 V W AM+  YS+    E A  +F +M   G  
Sbjct: 222 -----GIVRKD----------------AVVWTAMVSCYSENDCPENAFRVFSKMRVSGCK 260

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN   L   + AA  + ++ +GK  H CA+K L   +  VG +L+  YAKCG ++D+ L 
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 320

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +   +++  + +I  YAQ+ + E+A E F R+  + + PN  +L  +L AC +   +
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 380

Query: 358 EKGYSYFSQA 367
           + G    + A
Sbjct: 381 DFGKQIHNHA 390



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 138/322 (42%), Gaps = 43/322 (13%)

Query: 94  YLFSRMLLLNIRPS-----EFTFGSVIPSSTALEDLNLGKQLHAWATKVGL--QSNVFVG 146
           +L   +  L I PS      F     +    A  D   G+ +H    + G   + ++F  
Sbjct: 40  WLEDELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCA 99

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           + +L++Y KL  +  A R+F+     N+VS+ T++    +R  FE A  LF+ +      
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRL------ 153

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
            W                         EG   N   L   +  A  + A G+    H+CA
Sbjct: 154 RW-------------------------EGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCA 188

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
            K     + FVG+ LI  Y+ C  + D+  VF+ +  ++ V W A++  Y++N   E A 
Sbjct: 189 WKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAF 248

Query: 327 EFFERMRINGIRPNGVTLLGLLWA--CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384
             F +MR++G +PN   L  +L A  C  + ++ KG    +   L D    +P     ++
Sbjct: 249 RVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDT---EPHVGGALL 305

Query: 385 DLLSRSGRFKEAKEFLYDLPFD 406
           D+ ++ G  K+A+     +P+D
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYD 327


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  310 bits (795), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 172/473 (36%), Positives = 268/473 (56%), Gaps = 17/473 (3%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEE--AIYLFSRMLLLN-IRPSEFTFGSVIPSS 118
           H++F+++P  N  S  TII  F++    +   AI LF  M+    + P+ FTF SV+ + 
Sbjct: 79  HKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKAC 138

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF------------ 166
                +  GKQ+H  A K G   + FV S ++ +Y+    +++A  +F            
Sbjct: 139 AKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVM 198

Query: 167 --EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
                 +  +V +  MI G ++    + A  LF +M  R+VVSWN MI GYS  G  ++A
Sbjct: 199 TDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDA 258

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           V +F EM +  + PN+ TL   + A + + +L +G+  H  A     ++D  +G++LI  
Sbjct: 259 VEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDM 318

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+KCG +E ++ VF++L   N++TW+A+I G+A +G+  +AI+ F +MR  G+RP+ V  
Sbjct: 319 YSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAY 378

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           + LL AC+H GLVE+G  YFSQ    D    + EHY CMVDLL RSG   EA+EF+ ++P
Sbjct: 379 INLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMP 438

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
             P    WKALLG C++  NVE+G+  A  ++ + P D  +YV LSN  +  G W  VS 
Sbjct: 439 IKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSE 498

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +R  MKEK + + PGCS I+I   +H FV  D +H    EI ++L   ++++R
Sbjct: 499 MRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 146/316 (46%), Gaps = 55/316 (17%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE--AVNLFIEMLREGLV-PNHSTLPCAIIA 249
           A K+F +MP RN  SWN +I G+S++  ++   A+ LF EM+ +  V PN  T P  + A
Sbjct: 78  AHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKA 137

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED---------------- 293
            A    +  GK  H  A+K+    D FV ++L+  Y  CG M+D                
Sbjct: 138 CAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVV 197

Query: 294 -----------------------------SLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
                                        + ++FDK+ +R++V+WN +I GY+ NG  ++
Sbjct: 198 MTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKD 257

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACM 383
           A+E F  M+   IRPN VTL+ +L A +  G +E G      A  ED G+ +     + +
Sbjct: 258 AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYA--EDSGIRIDDVLGSAL 315

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAARRILALDPE 441
           +D+ S+ G  ++A      LP +  I  W A++ G  IH      +  F   R   + P 
Sbjct: 316 IDMYSKCGIIEKAIHVFERLPRENVIT-WSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374

Query: 442 DVSSYVMLSNALSVAG 457
           DV +Y+ L  A S  G
Sbjct: 375 DV-AYINLLTACSHGG 389



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 139/297 (46%), Gaps = 12/297 (4%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +   +FD++   +VVS  T+I  ++    +++A+ +F  M   +IRP+  T  SV+P+ +
Sbjct: 226 AARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAIS 285

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            L  L LG+ LH +A   G++ +  +GSA++D+Y K   IE+A  VFE     NV++++ 
Sbjct: 286 RLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSA 345

Query: 180 MICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLR-E 234
           MI G     +  DA+  F +M    V    V++  ++   S  G  EE    F +M+  +
Sbjct: 346 MINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVD 405

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           GL P      C +        L   + F    +    K D  +  +L+      G++E  
Sbjct: 406 GLEPRIEHYGCMVDLLGRSGLLDEAEEF---ILNMPIKPDDVIWKALLGACRMQGNVEMG 462

Query: 295 LLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGL 347
             V + L +    +   + A+   YA  G   E  E   RM+   IR + G +L+ +
Sbjct: 463 KRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDI 519


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  310 bits (795), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 252/440 (57%), Gaps = 3/440 (0%)

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL--EDLNLGKQL 130
           +V  T+ + R+ +     EA   F+RM L  + P+  TF +++ +      E       L
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116

Query: 131 HAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           H +A K GL + +V VG+A++D+Y K + +  A +VF +    N VS+ TM+ G ++   
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            E A++LF EMP R+ +SW A+I G  + G +E+A+  F +M R G+  ++ ++   + A
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A++ AL +G   H   +    K ++ + NSLI  Y++CG +E +  VF K+ +R +V+W
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSW 296

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           N++I G+A NG  +E++EFF  M+  G +P+GV+  G L AC+H GLV KG   F   K 
Sbjct: 297 NSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKS 356

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
                 + EHY C+VDL  R+GR ++A   + ++P  P      +LL  C+ H +V L E
Sbjct: 357 VHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAE 416

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
              + +  LDPE  + YV+LSN  +  GKWD  +N+RR MK +G+ + PG S +EI  KV
Sbjct: 417 RLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKV 476

Query: 490 HVFVTGDRNHHMNDEIYAVL 509
           H FV GD  H   D IY++L
Sbjct: 477 HEFVAGDNYHADADNIYSML 496



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 64/295 (21%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FDE+P  + +S T +I    K  + E+A+  F +M    +     +  +V+ +   L 
Sbjct: 182 QLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLG 241

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LG  +H +      + N+ + ++++D+Y +   IE A +V                 
Sbjct: 242 ALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQV----------------- 284

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                         F +M  R +VSWN++I G++  G  +E++  F  M +EG  P+  +
Sbjct: 285 --------------FVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVS 330

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              A+ A ++   +  G             L++F                D++    K+T
Sbjct: 331 YTGALTACSHAGLVNKG-------------LELF----------------DNMKSVHKIT 361

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            R I  +  ++  Y + GR E+A+   E M    ++PN V L  LL AC   G V
Sbjct: 362 PR-IEHYGCIVDLYGRAGRLEDALNMIEEMP---MKPNEVVLGSLLAACRTHGDV 412


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  310 bits (795), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 283/500 (56%), Gaps = 12/500 (2%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           ++  L K+H+    +L++T  A      +P +   + S G +    +  + VF ++   N
Sbjct: 36  TMKDLQKIHA----HLLKTGLAKHPLAVSPVLAFCATSPGGD---INYAYLVFTQIHSPN 88

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           + S  TII  F++      AI LF  ML+++ ++P   T+ SV  +   L   + G QLH
Sbjct: 89  LFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLH 148

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
               K+GLQ + F+ + I+ +Y     + E  + F +  + ++V++ +MI GL K    +
Sbjct: 149 GRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVD 208

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           ++ KLF EMP RN VSWN+MI GY + GR  EA++LF +M  E + P+  T+   + A+A
Sbjct: 209 ESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASA 268

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            + AL  G+  H    K   +L+V V  S+I  Y KCGS+ ++  VF+    + + +WN 
Sbjct: 269 RLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNT 328

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I G A NG   EAI+ F R+  + +RP+ VT +G+L ACN++GLV+K   YFS   +  
Sbjct: 329 MILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSL--MSK 386

Query: 372 PGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
              ++P  +HY+CMVD L R+G  +EA+E + ++P +P    W +LL  C+ H NVEL +
Sbjct: 387 TYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAK 446

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
            AA+ I+ LD  D   YV+LSN  + + +++     R  MKEK + + PGCS IE+  ++
Sbjct: 447 RAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEI 506

Query: 490 HVFVTGDRNHHMNDEIYAVL 509
           H FV G R H    E+Y++L
Sbjct: 507 HEFVAGGRLHPQAQEVYSLL 526


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 160/466 (34%), Positives = 263/466 (56%), Gaps = 32/466 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S    + S +++F  +   NVVS T +I  + +   Y++   LF  M L   RP  F   
Sbjct: 343 SNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAIT 402

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S + +    E L  GK +H +A + G++  + V +A++++Y+K  ++EEA  +F+     
Sbjct: 403 SALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFD----- 457

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
            VVS                          ++++SWN +IGGYS+     EA +LF EML
Sbjct: 458 GVVS--------------------------KDMISWNTLIGGYSRNNLANEAFSLFTEML 491

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            + L PN  T+ C + AAA++++L  G+  HA A++     D FV N+LI  Y KCG++ 
Sbjct: 492 LQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALL 550

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  +FD+L+ +N+++W  ++ GY  +GRG +AI  FE+MR++GI P+  +   +L+AC+
Sbjct: 551 LARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACS 610

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+GL ++G+ +F   + E     + +HY CMVDLL  +G  KEA EF+  +P +P    W
Sbjct: 611 HSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIW 670

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LL GC+IH NV+L E  A R+  L+PE+   YV+L+N  + A +W+ V  ++ ++  +
Sbjct: 671 VSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGR 730

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G+    GCSWIE K KVHVF+  +RNH     I   L    ++++E
Sbjct: 731 GLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQE 776



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 182/412 (44%), Gaps = 43/412 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSA-TTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           + CG       +  +VFDE+P ++ V   T ++  +AK     E + LF +M    +RP 
Sbjct: 140 LKCGD----LENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPD 195

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            +T   V+     L  +  G+ +H    K+G  S   VG+A++  Y K            
Sbjct: 196 AYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAK------------ 243

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                                R +DA+ +F  MPHR+V+SWN+MI G +  G  ++A+ L
Sbjct: 244 -------------------SNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIEL 284

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F+ M  EG   + +TL   + A A +  L +G+  H  +VK        + N L+  Y+ 
Sbjct: 285 FVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSN 344

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C     +  +F  + ++N+V+W A+I  Y + G  ++    F+ M + G RP+   +   
Sbjct: 345 CSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSA 404

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFD 406
           L A     L++ G S    A     GM K       ++++  + G  +EAK  ++D    
Sbjct: 405 LHAFAGNELLKHGKSVHGYAIRN--GMEKVLAVTNALMEMYVKCGNMEEAK-LIFDGVVS 461

Query: 407 PGIGFWKALLGGCQIHSNVELGEFA--ARRILALDPEDVSSYVMLSNALSVA 456
             +  W  L+GG    +N+    F+     +L L P  V+   +L  A S++
Sbjct: 462 KDMISWNTLIGGYS-RNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASLS 512



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 5/149 (3%)

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFER 331
           +D  +G  L+  Y KCG +E++  VFD++ +  ++  W A++ GYA+ G   E +  F +
Sbjct: 127 MDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRK 186

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRS 390
           M   G+RP+  T+  +L      G +E G        LE  G          ++   ++S
Sbjct: 187 MHCCGVRPDAYTISCVLKCIAGLGSIEDG--EVVHGLLEKLGFGSQCAVGNALMAFYAKS 244

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            R K+A      +P    I  W +++ GC
Sbjct: 245 NRTKDAILVFDGMPHRDVIS-WNSMISGC 272


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 167/474 (35%), Positives = 271/474 (57%), Gaps = 44/474 (9%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA---IYLFSRMLLLNIRPS 107
           CGS         QVFDE+   +VV+ T++I  +++  +   A   + LF  M+   +RP+
Sbjct: 139 CGS----LEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPN 194

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           EF   S++     L     GKQ+H    K G Q NVFVGS+++D+Y +            
Sbjct: 195 EFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYAR------------ 242

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                         CG L+  R      +F E+  +N VSWNA+I G+++ G  EEA+ L
Sbjct: 243 --------------CGELRESRL-----VFDELESKNEVSWNALISGFARKGEGEEALGL 283

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F++M REG      T    + +++   +L  GK  HA  +K   KL  +VGN+L+  YAK
Sbjct: 284 FVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAK 343

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLG 346
            G++ D+  VFD+L + ++V+ N+++ GYAQ+G G+EA+E FE M +   I PN +T L 
Sbjct: 344 SGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLS 403

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLP 404
           +L AC+H GL+++G  YF   +L     L+P+  HY  +VDL  R+G   +AK F+ ++P
Sbjct: 404 VLTACSHAGLLDEGLYYF---ELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMP 460

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
            +P    W ALLG  ++H N E+G +AA+++L LDP    ++ +LSN  + AG+W +V+ 
Sbjct: 461 IEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAK 520

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +R+EMK+ G+ + P CSW+EI++ VH+F   D +H   +++Y +  +  ++I+E
Sbjct: 521 VRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKE 574



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 130/261 (49%), Gaps = 34/261 (13%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           ++ P    +  ++   T L  L  GK +H        ++++ + ++IL +Y K  S+E A
Sbjct: 86  SLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIA 145

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            +VF++    +VV++T+MI                                GYSQ G   
Sbjct: 146 RQVFDEMCVKDVVTWTSMIT-------------------------------GYSQDGYAS 174

Query: 223 EAVN---LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
            A     LF+EM+R+GL PN   L   +     + +   GK  H C  K+  + +VFVG+
Sbjct: 175 SATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGS 234

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           SL+  YA+CG + +S LVFD+L  +N V+WNA+I G+A+ G GEEA+  F +M+  G   
Sbjct: 235 SLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGA 294

Query: 340 NGVTLLGLLWACNHTGLVEKG 360
              T   LL + + TG +E+G
Sbjct: 295 TEFTYSALLCSSSTTGSLEQG 315


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 170/507 (33%), Positives = 280/507 (55%), Gaps = 17/507 (3%)

Query: 14  LNKLSKLHSLAPNYLIE-TQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           +N+L ++ +      IE T++  V  L+ P+I                 H++FD +P   
Sbjct: 1   MNRLKQIQAYTLRNGIEHTKQLIVSLLQIPSI--------------PYAHKLFDFIPKPT 46

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
           V     +I  ++    + +   L+++M L    P+E +F  +  +  +L     G+ LH 
Sbjct: 47  VFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHT 106

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
              K G   +VF  +A++D+Y KL  +  A + F++    +V ++ +MI G  +    E 
Sbjct: 107 HFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEG 166

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLPCAIIAAA 251
           AL+LF+ MP RNV SW AMI GY+Q G+  +A+++F+ M  E  + PN  TL   + A A
Sbjct: 167 ALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACA 226

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT-ERNIVTWN 310
           N+ AL +G+     A       +++V N+L+  YA+CG ++ +  VF+++   RN+ +WN
Sbjct: 227 NLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWN 286

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I G A +GR +EAIE F +M   G  P+ VT +G+L AC H G+V +G  +F   + +
Sbjct: 287 SMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERD 346

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
                K EHY CMVDLL R+G  +EA + +  +P +P    W  LLG C  H +VEL E 
Sbjct: 347 FSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEK 406

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
           AA  +  L+P +  +YV+LSN  + AG+WD V+ +R+ MK   +T+  G S+IE    +H
Sbjct: 407 AAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGHIH 466

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            F+  DR+H  +DEIYA+L   + +++
Sbjct: 467 KFIVEDRSHSRSDEIYALLDEVSMKMK 493


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 165/467 (35%), Positives = 268/467 (57%), Gaps = 15/467 (3%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H++F +  + N+    T+I        ++E+I ++  M    + P  FTF  ++ +   L
Sbjct: 62  HRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARL 121

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D  LG +LH    K G +S+ FV ++++ LY K   I+ A +VF+D    NV ++T +I
Sbjct: 122 LDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAII 181

Query: 182 CGLLKRERFEDALKLFQE-------MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
            G +   +  +A+ +F+        M  +++VSW++MI GY+  G  +EA++LF +ML E
Sbjct: 182 SGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNE 241

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGK--SFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           G  P+   +   + A A + AL +G   S      +FLG  +  +G +LI  YAKCG M+
Sbjct: 242 GFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLG--NPVLGTALIDMYAKCGRMD 299

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  VF  + +++IV WNA I G A +G  + A   F +M  +GI P+G T +GLL AC 
Sbjct: 300 SAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACT 359

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLV++G  YF+   +E    L PE  HY CMVDLL R+G   EA + +  +P +    
Sbjct: 360 HAGLVDEGRQYFNS--MERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAI 417

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALLGGC++H + +L E   ++++AL+P +  +YV+LSN  S + KW++ + IR  M 
Sbjct: 418 VWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMS 477

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           E+G+ +VPG SWIE+   VH F+ GD +H ++++IYA L    + ++
Sbjct: 478 ERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLK 524



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 161/391 (41%), Gaps = 75/391 (19%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K +HA   ++GL  + ++ + +L       +   + R+F  T  PN+  + TMI GL+  
Sbjct: 27  KHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLN 86

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
           + F+++++++  M                                +EGL P+  T P  +
Sbjct: 87  DSFQESIEIYHSMR-------------------------------KEGLSPDSFTFPFLL 115

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN-- 305
            A A +    +G   H   VK   + D FV  SL+S Y KCG ++++  VFD + E+N  
Sbjct: 116 KACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVA 175

Query: 306 ------------------------------------IVTWNAVICGYAQNGRGEEAIEFF 329
                                               IV+W+++I GYA NG  +EA++ F
Sbjct: 176 AWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLF 235

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
            +M   G RP+   ++G+L AC   G +E G ++ S     +  +  P     ++D+ ++
Sbjct: 236 FKMLNEGFRPDCYAMVGVLCACARLGALELG-NWASNLMDRNEFLGNPVLGTALIDMYAK 294

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI--HSNVELGEFAARRILALDPEDVSSYV 447
            GR   A E    +     I  W A + G  +  H     G F       ++P D +++V
Sbjct: 295 CGRMDSAWEVFRGMR-KKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEP-DGNTFV 352

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
            L  A + AG  D        M E+  T  P
Sbjct: 353 GLLCACTHAGLVDEGRQYFNSM-ERVFTLTP 382



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           C    D F     VFD + + ++VS +++I  +A     +EA+ LF +ML    RP  + 
Sbjct: 190 CREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYA 249

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              V+ +   L  L LG        +     N  +G+A++D+Y K   ++ A  VF    
Sbjct: 250 MVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMR 309

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
             ++V +   I GL      + A  LF +M    +
Sbjct: 310 KKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGI 344


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 264/456 (57%), Gaps = 4/456 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD      VV+   ++  + +   ++++  LF  M    + P+  T   ++ + + L+
Sbjct: 163 KVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLK 222

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL  GK ++ +     ++ N+ + + ++D++     ++EA  VF++  N +V+S+T+++ 
Sbjct: 223 DLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVT 282

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     + + A K F ++P R+ VSW AMI GY +  R  EA+ LF EM    + P+  T
Sbjct: 283 GFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFT 342

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++ AL +G+       K   K D FVGN+LI  Y KCG++  +  VF ++ 
Sbjct: 343 MVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH 402

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            ++  TW A+I G A NG GEEA+  F  M    I P+ +T +G+L AC H G+VEKG S
Sbjct: 403 HKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQS 462

Query: 363 YFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           +F    ++    +KP   HY CMVDLL R+GR +EA E + ++P  P    W +LLG C+
Sbjct: 463 FFISMTMQHG--IKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACR 520

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H NV+L E AA++IL L+PE+ + YV+L N  +   +W+N+  +R+ M E+G+ + PGC
Sbjct: 521 VHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGC 580

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           S +E+   V+ FV GD++H  + EIYA L +  + +
Sbjct: 581 SLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQDL 616



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 115/465 (24%), Positives = 215/465 (46%), Gaps = 29/465 (6%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I LL  C+S   + +L ++HS        T K  +        R  +  C  ES K    
Sbjct: 11  ISLLEKCKS---MYQLKQIHS-------HTIKMGLSSDPLFQKRVIAFCCAHESGKMIYA 60

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            QVFD +P   +    T+I  +++ +H +  + ++  ML  NI+P  FTF  ++   T  
Sbjct: 61  RQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRN 120

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  GK L   A K G  SN+FV  A + ++     ++ A +VF+      VV++  M+
Sbjct: 121 MALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIML 180

Query: 182 CGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            G  + ++F+ +  LF EM  R    N V+   M+   S+    E   +++ + +  G+V
Sbjct: 181 SGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY-KYINGGIV 239

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
             +  L   +I     AA G      +     +   DV    S+++ +A  G ++ +   
Sbjct: 240 ERNLILENVLIDM--FAACGEMDEAQS-VFDNMKNRDVISWTSIVTGFANIGQIDLARKY 296

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD++ ER+ V+W A+I GY +  R  EA+  F  M+++ ++P+  T++ +L AC H G +
Sbjct: 297 FDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGAL 356

Query: 358 EKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           E G    +Y  +  +++   +       ++D+  + G   +AK+   ++        W A
Sbjct: 357 ELGEWVKTYIDKNSIKNDTFVG----NALIDMYFKCGNVGKAKKVFKEMHHKDKFT-WTA 411

Query: 415 LLGGCQI--HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           ++ G  I  H    L  F+     ++ P+++ +Y+ +  A + AG
Sbjct: 412 MIVGLAINGHGEEALAMFSNMIEASITPDEI-TYIGVLCACTHAG 455



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 130/282 (46%), Gaps = 13/282 (4%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A ++F  +P   +  WN MI GYS+    +  V++++ ML   + P+  T P  +     
Sbjct: 60  ARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTR 119

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
             AL  GK     AVK     ++FV  + I  ++ C  ++ +  VFD      +VTWN +
Sbjct: 120 NMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIM 179

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKL 369
           + GY +  + +++   F  M   G+ PN VTL+ +L AC+    +E G   Y Y +   +
Sbjct: 180 LSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIV 239

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
           E   +L+      ++D+ +  G   EA+  ++D   +  +  W +++ G      ++L  
Sbjct: 240 ERNLILE----NVLIDMFAACGEMDEAQS-VFDNMKNRDVISWTSIVTGFANIGQIDL-- 292

Query: 430 FAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMK 470
             AR+     PE D  S+  + +      ++     + REM+
Sbjct: 293 --ARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQ 332


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 165/465 (35%), Positives = 264/465 (56%), Gaps = 16/465 (3%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM------LLLNIRP 106
           S+   F+  +++FDE+P  N+VS  ++I    +   ++EA+  F  M      L+L+   
Sbjct: 155 SKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLD--- 211

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
            EFT  S++ + + L+ +   +Q+H  AT VG ++N+ + +A++D Y K      +  +F
Sbjct: 212 -EFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLF 270

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                 + VS+T+M+    +  R +DA K+F EMP +  VSW A+I G+ + GR  EA+ 
Sbjct: 271 RSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALE 330

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK---LDVFVGNSLIS 283
           +F +M++EG++P   T    + A A+ A +G GK  H   ++        +V+V N+L+ 
Sbjct: 331 VFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMD 390

Query: 284 FYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
            YAKCG M+ +  +F+ +   +++V+WN +I G+AQNGRGE+++  F+RM  + I PN V
Sbjct: 391 MYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHV 450

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T LG+L ACNH GLV  G       +       K  HYA ++DLL R  R +EA   +  
Sbjct: 451 TFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEK 510

Query: 403 LP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           +P      I  W A+LGGC++H N+EL   AA  + AL+PE+   YVMLSN  + +G+W 
Sbjct: 511 VPNEISNHIAMWGAVLGGCRVHGNLELARKAAEALFALEPENTGRYVMLSNIYAASGRWS 570

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           + + IR  MKE+G+ + P  S IE+K   H FV  D+ H    EI
Sbjct: 571 DTNRIRNVMKERGLKKEPAFSRIELKESRHEFVAKDKFHPQIGEI 615



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 152/343 (44%), Gaps = 35/343 (10%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F S+I +  + + L  GK LH+   K  L    F+ + ++DLY K    E   + F+D  
Sbjct: 81  FSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLP 140

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           N    ++ T++    K+  F  A KLF EMP RN+VS+N++I G ++   ++EAV  F E
Sbjct: 141 NKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFRE 200

Query: 231 MLR--EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           M     GL+ +  TL   +   + +  +   +  H  A     + ++ + N+LI  Y KC
Sbjct: 201 MQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKC 260

Query: 289 GS-------------------------------MEDSLLVFDKLTERNIVTWNAVICGYA 317
           G                                ++D+  VF+++  +  V+W A+I G+ 
Sbjct: 261 GEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFV 320

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA--KLEDPGML 375
           +NGR  EA+E F +M   G+ P   T + +L AC    L+ +G     Q         + 
Sbjct: 321 KNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLF 380

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               +  ++D+ ++ G  K A+     +     +  W  L+ G
Sbjct: 381 NVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITG 423



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 13/219 (5%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V   + + +     +VF+E+P    VS   +I  F K     EA+ +F +M+   + 
Sbjct: 282 TSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVL 341

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS----NVFVGSAILDLYIKLSSIEE 161
           P   TF SV+ +  +   +  GKQ+H    + G  S    NV+V +A++D+Y K   ++ 
Sbjct: 342 PRAQTFVSVLDACASEALIGRGKQVHCQIIR-GRSSDNLFNVYVFNALMDMYAKCGDMKS 400

Query: 162 ATRVFE-DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
           A  +FE   H  +VVS+ T+I G  +  R ED+L +F  M   N+   +    G      
Sbjct: 401 AENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACN 460

Query: 221 NEEAVNLFIEML-----REGLVP--NHSTLPCAIIAAAN 252
           +   VN  +E+L     R G+ P  NH  L   ++   N
Sbjct: 461 HAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKN 499


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 160/447 (35%), Positives = 258/447 (57%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FDE+ + ++V+ + +I  F +   YEEAI  F  M  + +   E    S + +   L 
Sbjct: 331 KLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLL 390

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +N+GK +H+ + K+G +S + + +A++ +Y K   I  A ++F++ +  +++S+ +MI 
Sbjct: 391 VVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 450

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G LK    ++A  +F  MP ++VVSW++MI GY+Q    +E + LF EM   G  P+ +T
Sbjct: 451 GYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 510

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I A A +AAL  GK  HA   +    ++V +G +LI  Y KCG +E +L VF  + 
Sbjct: 511 LVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMI 570

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+ I TWNA+I G A NG  E +++ F  M+   + PN +T +G+L AC H GLV++G  
Sbjct: 571 EKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH 630

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F     +       +HY CMVDLL R+G+ +EA+E L  +P  P +  W ALLG C+ H
Sbjct: 631 HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 690

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            + E+G    R+++ L P+    +V+LSN  +  GKWD+V  IR  M +  + ++PGCS 
Sbjct: 691 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSM 750

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           IE    +H F+ GD+ H   D I  +L
Sbjct: 751 IEANGVIHEFLAGDKTHPDMDAIEDML 777



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 196/420 (46%), Gaps = 72/420 (17%)

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           A  L+  ML   +    +T+  +I + +        KQ+H    K+G  S+V+V + +++
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV------ 205
            +   S++ +A RVF ++   + VS+ +++ G ++    E+A  ++ +MP R++      
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM 316

Query: 206 -------------------------VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                                    V+W+A+I  + Q    EEA+  F+ M + G++ + 
Sbjct: 317 IVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDE 376

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM--------- 291
                A+ A AN+  + MGK  H+ ++K   +  + + N+LI  Y+KCG +         
Sbjct: 377 VVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDE 436

Query: 292 ----------------------EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
                                 +++  +FD + E+++V+W+++I GYAQN   +E +  F
Sbjct: 437 AYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALF 496

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDL 386
           + M+++G +P+  TL+ ++ AC     +E+G   ++Y  +  L    +L       ++D+
Sbjct: 497 QEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILG----TTLIDM 552

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVS 444
             + G  + A E  Y +  + GI  W AL+ G  ++  VE  L  F+  +   + P +++
Sbjct: 553 YMKCGCVETALEVFYGM-IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEIT 611



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%)

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
            Y QT     A  L+  ML   L  ++ T P  I A +   +    K  H   +K     
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           DV+V N+LI+ ++ C +M D+  VF++ +  + V+WN+++ GY + G  EEA   + +M
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 165/474 (34%), Positives = 260/474 (54%), Gaps = 36/474 (7%)

Query: 26  NYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           NY+++      Q +    +    V CG   D      ++FDE+P  N VS  TII  +  
Sbjct: 156 NYMVDNGFEPDQYMRNRVLLM-HVKCGMMIDAC----RLFDEMPARNAVSWGTIISGYVD 210

Query: 86  QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFV 145
             +Y EA  LF  M          TF ++I +S  LE +  G+QLH+ A K GL  ++FV
Sbjct: 211 SGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFV 270

Query: 146 GSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
             A++D+Y K  S+E+A  VF+                               EMP + +
Sbjct: 271 SCALIDMYSKCGSLEDAHCVFD-------------------------------EMPDKTI 299

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
           V WN++I GY+  G +EEA++L+ EM   G+  +H T    I   + +A++   K  HA 
Sbjct: 300 VGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHAS 359

Query: 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325
            V+    LDV    +L+ FY+K G ++D+  VFD+++ RNI++WNA+I GY  +G GEEA
Sbjct: 360 LVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEA 419

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385
           I+ FE+M   G+ PN VT L +L AC+ +GL E+G+  F     +     +  H+ACM++
Sbjct: 420 IDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIE 479

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445
           LL R G   EA   +   PF P    W ALL  C++H N+ELG+FAA ++  ++PE +S+
Sbjct: 480 LLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSN 539

Query: 446 YVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           Y++L N  + +GK    +++ + +K KG+  +P CSWIE+ ++ H F++GD++H
Sbjct: 540 YIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHH 593



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 5/209 (2%)

Query: 220 RNEEAVNLF-IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           +  +A+ +F I  L +G    +ST    I A   + ++   K      V    + D ++ 
Sbjct: 111 KYRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMR 170

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N ++  + KCG M D+  +FD++  RN V+W  +I GY  +G   EA   F  MR     
Sbjct: 171 NRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYD 230

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAK 397
               T   ++ A     ++  G    S A     G+ +    +C ++D+ S+ G  ++A 
Sbjct: 231 CGPRTFATMIRASAGLEIIFPGRQLHSCAI--KAGLGQDIFVSCALIDMYSKCGSLEDAH 288

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
               ++P D  I  W +++ G  +H   E
Sbjct: 289 CVFDEMP-DKTIVGWNSIIAGYALHGYSE 316


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 160/447 (35%), Positives = 258/447 (57%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FDE+ + ++V+ + +I  F +   YEEAI  F  M  + +   E    S + +   L 
Sbjct: 196 KLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLL 255

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +N+GK +H+ + K+G +S + + +A++ +Y K   I  A ++F++ +  +++S+ +MI 
Sbjct: 256 VVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 315

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G LK    ++A  +F  MP ++VVSW++MI GY+Q    +E + LF EM   G  P+ +T
Sbjct: 316 GYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 375

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I A A +AAL  GK  HA   +    ++V +G +LI  Y KCG +E +L VF  + 
Sbjct: 376 LVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMI 435

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+ I TWNA+I G A NG  E +++ F  M+   + PN +T +G+L AC H GLV++G  
Sbjct: 436 EKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQH 495

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F     +       +HY CMVDLL R+G+ +EA+E L  +P  P +  W ALLG C+ H
Sbjct: 496 HFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKH 555

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            + E+G    R+++ L P+    +V+LSN  +  GKWD+V  IR  M +  + ++PGCS 
Sbjct: 556 GDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSM 615

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           IE    +H F+ GD+ H   D I  +L
Sbjct: 616 IEANGVIHEFLAGDKTHPDMDAIEDML 642



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 212/462 (45%), Gaps = 77/462 (16%)

Query: 55  SDKFSSVH-----QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           S  F  +H     ++F+ + + N      +I  + + +    A  L+  ML   +    +
Sbjct: 20  STHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNY 79

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T+  +I + +        KQ+H    K+G  S+V+V + +++ +   S++ +A RVF ++
Sbjct: 80  TYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNES 139

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV------------------------ 205
              + VS+ +++ G ++    E+A  ++ +MP R++                        
Sbjct: 140 SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFD 199

Query: 206 -------VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
                  V+W+A+I  + Q    EEA+  F+ M + G++ +      A+ A AN+  + M
Sbjct: 200 EMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 259

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM--------------------------- 291
           GK  H+ ++K   +  + + N+LI  Y+KCG +                           
Sbjct: 260 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 319

Query: 292 ----EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
               +++  +FD + E+++V+W+++I GYAQN   +E +  F+ M+++G +P+  TL+ +
Sbjct: 320 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 379

Query: 348 LWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           + AC     +E+G   ++Y  +  L    +L       ++D+  + G  + A E  Y + 
Sbjct: 380 ISACARLAALEQGKWVHAYIKRNGLTINVILG----TTLIDMYMKCGCVETALEVFYGM- 434

Query: 405 FDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVS 444
            + GI  W AL+ G  ++  VE  L  F+  +   + P +++
Sbjct: 435 IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEIT 476


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/456 (34%), Positives = 266/456 (58%), Gaps = 2/456 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++P  +V      I  F+   H      L+ +M      P++++F  + P+  +L +
Sbjct: 38  LFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFN 97

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  G+ LH+   K G  S++F  +A+LD+Y KL  +  A ++F++    ++ ++ ++I G
Sbjct: 98  VYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAG 157

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHST 242
             +    E AL+LF +MP RNV+SW A+I GY+Q G+  +A+ +FI +  E G  PN  +
Sbjct: 158 YARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVS 217

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL- 301
           +   + A + + AL +GK   A A       + +V N+++  +A+CG++E++  VFD++ 
Sbjct: 218 IASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIG 277

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           ++RN+ +WN +I G A +GR  +A++ +++M I  +RP+ VT +GLL AC H G+V +G 
Sbjct: 278 SKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGR 337

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F   + +     K EHY C+VDLL R+G  +EA   + ++P  P    W  LLG C  
Sbjct: 338 QLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSF 397

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVELGE AA  +  L+P +  +YV+LSN  ++AG W  V+ +R+ MK   +T+  G S
Sbjct: 398 HGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYS 457

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +IE+   +H F+  DR+H  + EIYA+L    + I+
Sbjct: 458 YIEVGDGIHEFIVEDRSHLKSGEIYALLHKIYDIIK 493



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 132/300 (44%), Gaps = 37/300 (12%)

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           +I  LL+      A  LF ++P  +V  +N  I  +S  G       L+ +M  +G  PN
Sbjct: 22  LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPN 81

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             +      A A++  +  G+  H+   K     D+F   +L+  YAK G +  +  +FD
Sbjct: 82  QYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFD 141

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI------------------------- 334
           ++  R+I TWN++I GYA++G  E A+E F +M +                         
Sbjct: 142 EMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEM 201

Query: 335 -------NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDL 386
                   G +PN V++  +L AC+  G ++ G    + A+  + G  K  + +  +++L
Sbjct: 202 FIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYAR--NNGFFKNAYVSNAVLEL 259

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAARRILALDPEDVS 444
            +R G  +EA++   ++     +  W  ++ G  +H      L  +    I  + P+DV+
Sbjct: 260 HARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVT 319



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 37/209 (17%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI--------------- 104
           S  Q+FDE+P  ++ +  ++I  +A+  H E A+ LF++M + N+               
Sbjct: 135 SARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGK 194

Query: 105 -----------------RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147
                            +P+E +  SV+P+ + L  L++GK++ A+A   G   N +V +
Sbjct: 195 YAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSN 254

Query: 148 AILDLYIKLSSIEEATRVFEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEMPHRNV- 205
           A+L+L+ +  +IEEA +VF++  +  N+ S+ TMI GL    R  DAL+L+ +M  R + 
Sbjct: 255 AVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMR 314

Query: 206 ---VSWNAMIGGYSQTGRNEEAVNLFIEM 231
              V++  ++   +  G   E   LF  M
Sbjct: 315 PDDVTFVGLLLACTHGGMVAEGRQLFESM 343


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 256/457 (56%), Gaps = 31/457 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFDE+P  ++VS  T+IG   +     EA+ L  +M       SEFT  SV+ +  A  
Sbjct: 120 QVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKC 179

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L+  + LHA+A K  +  NVFV +A+LD+Y K                          C
Sbjct: 180 ALSECQLLHAFAIKAAMDLNVFVATALLDVYAK--------------------------C 213

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL+K     DA+ +F+ MP R+VV+W++M  GY Q    E+A+ LF +    GL  +   
Sbjct: 214 GLMK-----DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFL 268

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   I A A +AA+  GK  +A   K     ++FV +SLI  YAKCG +E+S  VF  + 
Sbjct: 269 MSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +RN+V WNA+I G +++ R  E +  FE+M+  G+ PN VT + +L AC H GLV+KG  
Sbjct: 329 KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQK 388

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF     E        HY+CMVD LSR+G+  EA + +  LPF+     W +LL  C+ H
Sbjct: 389 YFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTH 448

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+EL E AA+++  ++P +  +Y++LSN  +  GKWD V+ +R+ +KE  + +  G SW
Sbjct: 449 GNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSW 508

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           IEIK KVH+F+ G+RNH    EIY+ L    +++++ 
Sbjct: 509 IEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKL 545



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 159/327 (48%), Gaps = 37/327 (11%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           GK  HA    +GL++++   + ++++Y K  S++ A +VF++  + ++VS+ T       
Sbjct: 83  GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNT------- 135

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                                   MIG  +Q G   EA++L ++M REG   +  T+   
Sbjct: 136 ------------------------MIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSV 171

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A A   AL   +  HA A+K    L+VFV  +L+  YAKCG M+D++ VF+ + +R++
Sbjct: 172 LCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSV 231

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           VTW+++  GY QN   E+A+  F +    G++ +   +  ++ AC     + +G      
Sbjct: 232 VTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQV--N 289

Query: 367 AKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS-N 424
           A L   G       A  ++D+ ++ G  +E+ +   D+     +  W A++ G   H+ +
Sbjct: 290 ALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARS 348

Query: 425 VE-LGEFAARRILALDPEDVSSYVMLS 450
           +E +  F   + + L P DV+   +LS
Sbjct: 349 LEVMILFEKMQQMGLSPNDVTFVSVLS 375



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 14/249 (5%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +LC C +  +L++   LH+ A    ++     +      A+      CG   D       
Sbjct: 171 VLCACAAKCALSECQLLHAFAIKAAMD-----LNVFVATALLDVYAKCGLMKDAVC---- 221

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ +PD +VV+ +++   + +   YE+A+ LF +     ++  +F   SVI +   L  
Sbjct: 222 VFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAA 281

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  GKQ++A  +K G  SN+FV S+++D+Y K   IEE+ +VF D    NVV +  MI G
Sbjct: 282 MIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISG 341

Query: 184 LLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVP 238
           L +  R  + + LF++M       N V++ +++      G  ++    F  M +E  L P
Sbjct: 342 LSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAP 401

Query: 239 NHSTLPCAI 247
           N     C +
Sbjct: 402 NVFHYSCMV 410


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 254/471 (53%), Gaps = 35/471 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG   D      ++FDE+P+ N+VS  TII        + EA  LF  M         
Sbjct: 21  VKCGMMID----ARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGS 76

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF  +I +S  LE +++G+QLHA   K+G+  ++FV  A++D+Y K  SIE+A  VFE 
Sbjct: 77  FTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFE- 135

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                         EMP +  V WN +I GY+  G +EEA++++
Sbjct: 136 ------------------------------EMPEKTTVGWNTIIAGYALHGYSEEALDMY 165

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM   G+  +H T    +   A +A++   K  HA  ++     D+    +L+ FY+K 
Sbjct: 166 YEMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKW 225

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +ED+  VFDK+  +N+++WNA+I GY  +GRG EA+E FE+M    + PN +T L +L
Sbjct: 226 GRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVL 285

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+H+GL E+G+  F     ++    +  HYACM++L+ R G   EA   +   PF P 
Sbjct: 286 SACSHSGLSERGWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPT 345

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W ALL  C+++ N ELG+FAA ++  ++P+ +++Y++L N  + AG     +++   
Sbjct: 346 ANMWAALLTACRVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHT 405

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +K KG+   P CSWIE+K + HVF++GD  H    EIY  +     +I ++
Sbjct: 406 LKRKGLRMRPVCSWIEVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKY 456



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           + D ++ N ++  + KCG M D+  +FD++ ERN+V+WN +I G    G   EA   F  
Sbjct: 7   EFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLN 66

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRS 390
           M          T   ++ A     L+  G      A     G+      +C ++D+ S+ 
Sbjct: 67  MWEEFSDAGSFTFAVMIRASAGLELISIGRQL--HACTLKMGIGDDIFVSCALIDMYSKC 124

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           G  ++A+    ++P    +G W  ++ G  +H   E
Sbjct: 125 GSIEDARFVFEEMPEKTTVG-WNTIIAGYALHGYSE 159


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 277/474 (58%), Gaps = 47/474 (9%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  ++++   +   VF    + N ++ + +I  +A+    + A  +F +M      P+E
Sbjct: 267 VTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTE 326

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF  ++ +S+ +  L +GKQ H    K+G +  V+V SA++D+Y K     +A   F  
Sbjct: 327 FTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQ 386

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
            ++ +                              +VV W AMI G+ Q G +EEA+ L+
Sbjct: 387 LYDVD------------------------------DVVIWTAMITGHVQNGEHEEALMLY 416

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             M +EG++P++ T+   + A A +AAL  GK  HA  +K    L   VG +L + Y+KC
Sbjct: 417 SRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGGSVGTALSTMYSKC 476

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G++EDS++VF ++ +R+I++WN++I G++Q+GRG +A++ FE M++ GI P+ +T + +L
Sbjct: 477 GNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVL 536

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
            AC+H GLV++G+ YF +A  +D G++ K +HYAC+VD+LSR+G+ KEAK+F+  +  D 
Sbjct: 537 CACSHMGLVDRGWFYF-RAMSKDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITIDH 595

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
           G   W+ +LG C+   + ++G +A  +++ L  ED S+Y++LSN  +   KW++V  +R 
Sbjct: 596 GTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRH 655

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH---------------HMNDEIY 506
            M+ +G+++ PGCSW+E+ ++V+VFV G++ H               HM DE Y
Sbjct: 656 LMRLRGVSKDPGCSWVELNNQVNVFVVGEQQHPEAEKINVELIRLAKHMKDEGY 709



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 168/366 (45%), Gaps = 35/366 (9%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPS 117
           S   +VFD++P  N VS   ++  +A     EEA  LF  ML    +  +EF   +V+ +
Sbjct: 175 SDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSA 234

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            +    L +G QLH    K GL   V V ++++ +Y K   ++ A  VF  +        
Sbjct: 235 VSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKE------ 288

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                                    RN ++W+AMI GY+Q G  + A  +F++M   G  
Sbjct: 289 -------------------------RNSITWSAMITGYAQNGEADCAATMFLQMHSAGFS 323

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P   T    + A++++ AL +GK  H   VK   +  V+V ++L+  YAKCG   D+   
Sbjct: 324 PTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDG 383

Query: 298 FDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           F +L +  ++V W A+I G+ QNG  EEA+  + RM   G+ P+ +T+  +L AC     
Sbjct: 384 FHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAA 443

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +E G    +Q  L+    L       +  + S+ G  +++      +P D  I  W +++
Sbjct: 444 LEPGKQLHAQI-LKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMP-DRDIISWNSII 501

Query: 417 GGCQIH 422
            G   H
Sbjct: 502 SGFSQH 507



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/417 (27%), Positives = 194/417 (46%), Gaps = 55/417 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPD--LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRP 106
           C        +   VF ++P    +V S  +++   ++ H    A+  F  M+     + P
Sbjct: 60  CSPPRPLLGAAFAVFADIPAGLRDVASWNSLLNPLSR-HQPLAALSHFRSMMSSTDAVLP 118

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS---NVFVGSAILDLYIKLSSIEEAT 163
           +  +F +V  ++  +   + G   HA+A K+   S   NVFV +A+L++Y KL +I +A 
Sbjct: 119 TPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDAR 178

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           RV                               F +MPHRN VSW AM+ GY+    +EE
Sbjct: 179 RV-------------------------------FDQMPHRNAVSWAAMVSGYATGKCSEE 207

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           A  LF  ML+E  +  +  +  A+++A ++   L +G   H   +K      V V NSL+
Sbjct: 208 AFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLV 267

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + YAK   M+ ++ VF    ERN +TW+A+I GYAQNG  + A   F +M   G  P   
Sbjct: 268 TMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEF 327

Query: 343 TLLGLLWACNHTGLV---EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           T +G+L A +  G +   ++ +    +   E    +K    + +VD+ ++ G   +AK+ 
Sbjct: 328 TFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVK----SALVDMYAKCGCTGDAKDG 383

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDV-SSYVMLSNAL 453
            + L     +  W A++ G     +V+ GE     +L   +D E V  SY+ +++ L
Sbjct: 384 FHQLYDVDDVVIWTAMITG-----HVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVL 435



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 37/223 (16%)

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +++++     G  LH WA K G  S+  V ++++  Y                 +P    
Sbjct: 23  AASSVRTRRAGDALHGWALKSGAASHTPVSNSLITFYC----------------SP---- 62

Query: 177 YTTMICGLLKRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR- 233
                     R     A  +F ++P   R+V SWN+++   S+  +   A++ F  M+  
Sbjct: 63  ---------PRPLLGAAFAVFADIPAGLRDVASWNSLLNPLSRH-QPLAALSHFRSMMSS 112

Query: 234 -EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL---GKLDVFVGNSLISFYAKCG 289
            + ++P   +      AAA + +   G   HA A K     G  +VFV  +L++ Y K G
Sbjct: 113 TDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALLNMYCKLG 172

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           ++ D+  VFD++  RN V+W A++ GYA     EEA E F  M
Sbjct: 173 AISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLM 215


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 160/437 (36%), Positives = 252/437 (57%), Gaps = 35/437 (8%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+ +P  +V+  + +I R+A+ +  E+A  LF R++  ++ P+E++  SV+ + T +  L
Sbjct: 302 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 361

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           + GKQ+H  A K+G +S++FVG+A++D Y K + ++ +                      
Sbjct: 362 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSS---------------------- 399

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                    LK+F  +   N VSWN ++ G+SQ+G  EEA+++F EM    +     T  
Sbjct: 400 ---------LKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYS 450

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + A A+ A++      H    K     D  +GNSLI  YAKCG + D+L VF  L ER
Sbjct: 451 SVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMER 510

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           +I++WNA+I GYA +G+  +A+E F+RM  + +  N +T + LL  C  TGLV  G S F
Sbjct: 511 DIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLF 570

Query: 365 SQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              ++ D G +KP  EHY C+V LL R+GR  +A +F+ D+P  P    W+ALL  C IH
Sbjct: 571 DSMRI-DHG-IKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIH 628

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            NV LG F+A +IL ++P+D ++YV+LSN  + AG  D V+ +R+ M+  G+ +VPG SW
Sbjct: 629 KNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSW 688

Query: 483 IEIKSKVHVFVTGDRNH 499
           +EIK ++H F  G  +H
Sbjct: 689 VEIKGEIHAFSVGSVDH 705



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 142/310 (45%), Gaps = 50/310 (16%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +S  ++FD +P+ N+VS  T++   A++  +E A  LF R+       ++F   +++  
Sbjct: 112 LASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKL 171

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           + A++   L   +H+ A K+G   N FVGS ++D Y   S + +A  VF           
Sbjct: 172 AIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFN---------- 221

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                G+++++                 V W AM+  YS+    E A             
Sbjct: 222 -----GIVRKD----------------AVVWTAMVSCYSENDCPENAFR----------- 249

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
                  C+++A   I+    G   H CA+K L   +  VG +L+  YAKCG ++D+ L 
Sbjct: 250 ---CAQSCSLLA---ISCARQG--IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 301

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +   +++  + +I  YAQ+ + E+A E F R+  + + PN  +L  +L AC +   +
Sbjct: 302 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 361

Query: 358 EKGYSYFSQA 367
           + G    + A
Sbjct: 362 DFGKQIHNHA 371



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 20/217 (9%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A +LF  MP RN+VS+  ++  ++Q G  E A  LF  +  EG   N   L   +  A  
Sbjct: 115 ARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIA 174

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           + A G+    H+CA K     + FVG+ LI  Y+ C  + D+  VF+ +  ++ V W A+
Sbjct: 175 MDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAM 234

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           +  Y++N   E A    +            +LL +  A        +G    +   L D 
Sbjct: 235 VSCYSENDCPENAFRCAQ----------SCSLLAISCA-------RQGIHGCAIKTLNDT 277

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
              +P     ++D+ ++ G  K+A+     +P+D  I
Sbjct: 278 ---EPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVI 311



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 9/128 (7%)

Query: 237 VPNHSTLPCAIIAAANIA---ALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKCGSM 291
           VP   +  CA      IA   A G G++ H   V+   +G+LD+F  N L++ Y K G +
Sbjct: 54  VPGVDSFACARQLQGCIARGDARG-GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPL 112

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG---VTLLGLL 348
             +  +FD++ ERN+V++  ++  +AQ G  E A   F R+R  G   N     T+L L 
Sbjct: 113 ASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLA 172

Query: 349 WACNHTGL 356
            A +  GL
Sbjct: 173 IAMDAAGL 180


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/517 (35%), Positives = 278/517 (53%), Gaps = 47/517 (9%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +L  C S  +L +  ++H+        T KA+++  E   ++   +   ++S+      +
Sbjct: 245 VLTSCGSLEALEQGRQVHAY-------TIKANLESNEF--VKNGLIDMYAKSNLLXDAKK 295

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD + + NV+S   +I  ++ Q    EA+ LF  M +    PS  TF S++  S +L  
Sbjct: 296 VFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFA 355

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L L KQ+H    K G+  ++F GSA++D+Y K S +++A  VFE                
Sbjct: 356 LELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFE---------------- 399

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          EM  +++V WNAM  GY+Q   NEEA+ L+  +      PN  T 
Sbjct: 400 ---------------EMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTF 444

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I AA+N+A+L  G+ FH   VK       FV N+L+  YAKCGS+E++  +F+    
Sbjct: 445 AALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIW 504

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R++V WN++I  +AQ+G  EEA+  F  M   GI+PN VT + +L AC+H G VE G ++
Sbjct: 505 RDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNH 564

Query: 364 FSQAKLEDPGM-LKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F+      PG  +KP  EHYAC+V LL RSG+  EAKEF+  +P +P    W++LL  C+
Sbjct: 565 FNSM----PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACR 620

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           I  NVELG++AA   ++ DP+D  SY++LSN  +  G W +V  +R  M    + + PG 
Sbjct: 621 IAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGR 680

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           SWIE+ +KV+VF+     H   D I +VL    + I+
Sbjct: 681 SWIEVNNKVNVFIARXTTHREADMIGSVLDILIQHIK 717



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 143/285 (50%), Gaps = 31/285 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD++ +   V+ TTII  + K      ++ LF++M   N+ P  +   SV+ + + LE 
Sbjct: 94  VFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 153

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+HA+  + G + +V V + ++D Y K                          C 
Sbjct: 154 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTK--------------------------CN 187

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +K  R     KLF +M  +N++SW  MI GY Q   + EA+ LF EM R G  P+    
Sbjct: 188 RVKAGR-----KLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFAC 242

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + +  ++ AL  G+  HA  +K   + + FV N LI  YAK   + D+  VFD + E
Sbjct: 243 TSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAE 302

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           +N++++NA+I GY+   +  EA+E F  MR+    P+ +T + LL
Sbjct: 303 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 347



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 154/316 (48%), Gaps = 39/316 (12%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+EF   SVI + T L  +  G QLH +  + G   +V+VG++++D Y K   IE A  V
Sbjct: 35  PNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLV 94

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+                               ++  +  V+W  +I GY++ GR+  ++
Sbjct: 95  FD-------------------------------QLLEKTAVTWTTIIAGYTKCGRSXVSL 123

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF +M    +VP+   +   + A + +  L  GK  HA  ++   ++DV V N LI FY
Sbjct: 124 ELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFY 183

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            KC  ++    +FD++  +NI++W  +I GY QN    EA++ F  M   G +P+G    
Sbjct: 184 TKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACT 243

Query: 346 GLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
            +L +C     +E+G   ++Y  +A LE    +K      ++D+ ++S    +AK+ ++D
Sbjct: 244 SVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKN----GLIDMYAKSNLLXDAKK-VFD 298

Query: 403 LPFDPGIGFWKALLGG 418
           +  +  +  + A++ G
Sbjct: 299 VMAEQNVISYNAMIEG 314


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 269/457 (58%), Gaps = 8/457 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+++P+    +  +II  +  ++   +AI  +  M+L  + P  FTF S+  S   L +
Sbjct: 34  VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE 93

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              GKQLH  +TK+G  S+ ++ + ++++Y     +  A +VF+   N +VVS+ TMI  
Sbjct: 94  ---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA 150

Query: 184 LLKRERFEDALKLFQEMP-HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
             + +   +A+KLF+ M    N+  WN MI G+ +    EEA++LF EM   G+  +  T
Sbjct: 151 YAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVT 210

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   +IA  ++ AL +GK  H    K   ++DV +G +L+  YAKCGS+E ++ VF ++ 
Sbjct: 211 MASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP 270

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E++++TW A+I G A  G+G +A+E F  M+++ ++P+ +T +G+L AC+H GLV +G +
Sbjct: 271 EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIA 330

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF+   + +   ++P  EHY CMVD+L R+GR  EA++ + ++P  P       LL  C+
Sbjct: 331 YFNS--MPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACR 388

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH N+ + E AA++++ LDP++  +YV+LSN  S    W+    +R  M E+ + + PGC
Sbjct: 389 IHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGC 448

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           S IE+   VH FV GD +H  + EIY  L     +++
Sbjct: 449 SAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLK 485



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 123/283 (43%), Gaps = 43/283 (15%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P   S     C L        A  +F ++P+    + N++I GY+      +A+  +  
Sbjct: 9   DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+ +GL P+  T P       +   L  GK  H  + K     D ++ N+L++ Y+ CG 
Sbjct: 69  MMLQGLDPDRFTFPSLF---KSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 125

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQ---------------------------NGR-- 321
           +  +  VFDK+  +++V+W  +I  YAQ                           NG   
Sbjct: 126 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVE 185

Query: 322 ---GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGML 375
               EEA+  F  M+++G++ + VT+  LL AC H G +E G   + Y  + K+E    L
Sbjct: 186 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVAL 245

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                  +VD+ ++ G  + A     ++P +  +  W AL+ G
Sbjct: 246 G----TALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVG 283



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 37/225 (16%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAK--------------------------------QH 87
           S  +VFD++ + +VVS  T+IG +A+                                  
Sbjct: 128 SARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDS 187

Query: 88  HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147
            YEEA+ LF+ M L  ++  + T  S++ + T L  L LGK LH +  K  ++ +V +G+
Sbjct: 188 DYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGT 247

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV-- 205
           A++D+Y K  SIE A RVF++    +V+++T +I GL    +   AL+LF EM    V  
Sbjct: 248 ALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKP 307

Query: 206 --VSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCAI 247
             +++  ++   S  G   E +  F  M  + G+ P+     C +
Sbjct: 308 DAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMV 352



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 16/214 (7%)

Query: 29  IETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHH 88
           IE +K  V      A+      CGS      S  +VF E+P+ +V++ T +I   A    
Sbjct: 234 IEKEKIEVDVALGTALVDMYAKCGS----IESAMRVFQEMPEKDVMTWTALIVGLAMCGQ 289

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG-KQLHAWATKVGLQSNVFVGS 147
             +A+ LF  M +  ++P   TF  V+ + +    +N G    ++   K G+Q ++    
Sbjct: 290 GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 349

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF-------EDALKLFQEM 200
            ++D+  +   I EA  + ++   P    Y  ++ GLL   R        E A +   E+
Sbjct: 350 CMVDMLGRAGRIAEAEDLIQNM--PMAPDYFVLV-GLLSACRIHGNLVVAERAAQQLIEL 406

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
             +N  ++  +   YS   +N EA     E++ E
Sbjct: 407 DPKNGGTYVLLSNIYSSM-KNWEAAKKMRELMVE 439



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 273 LDVFVGNSLISFYA--KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
           +D F  + +++F A    GS+  + LVF+++      T N++I GY       +AI F++
Sbjct: 8   VDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQ 67

Query: 331 RMRINGIRPNGVTLLGLLWAC 351
            M + G+ P+  T   L  +C
Sbjct: 68  LMMLQGLDPDRFTFPSLFKSC 88


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 255/457 (55%), Gaps = 31/457 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFDE+P  ++VS  T+IG   +     EA+ L  +M       SEFT  SV+ +  A  
Sbjct: 120 QVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKC 179

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L+  + LHA+A K  +  NVFV +A+LD+Y K                          C
Sbjct: 180 ALSECQLLHAFAIKAAMDLNVFVATALLDVYAK--------------------------C 213

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL+K     DA+ +F+ MP R+VV+W++M  GY Q    E+A+ LF +    GL  +   
Sbjct: 214 GLMK-----DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFL 268

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   I A A +AA+  GK  +A   K     ++FV +SLI  YAKCG +E+S  VF  + 
Sbjct: 269 MSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +RN+V WNA+I G +++ R  E +  FE+M+  G+ PN VT + +L AC H GLV KG  
Sbjct: 329 KRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQK 388

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF     E        HY+CMVD LSR+G+  EA + +  LPF+     W +LL  C+ H
Sbjct: 389 YFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTH 448

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+EL E AA+++  ++P +  +Y++LSN  +  GKWD V+ +R+ +KE  + +  G SW
Sbjct: 449 GNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSW 508

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           IEIK KVH+F+ G+RNH    EIY+ L    +++++ 
Sbjct: 509 IEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKL 545



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 159/327 (48%), Gaps = 37/327 (11%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           GK  HA    +GL++++   + ++++Y K  S++ A +VF++  + ++VS+ T       
Sbjct: 83  GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNT------- 135

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                                   MIG  +Q G   EA++L ++M REG   +  T+   
Sbjct: 136 ------------------------MIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSV 171

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A A   AL   +  HA A+K    L+VFV  +L+  YAKCG M+D++ VF+ + +R++
Sbjct: 172 LCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSV 231

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           VTW+++  GY QN   E+A+  F +    G++ +   +  ++ AC     + +G      
Sbjct: 232 VTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQM--N 289

Query: 367 AKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS-N 424
           A L   G       A  ++D+ ++ G  +E+ +   D+     +  W A++ G   H+ +
Sbjct: 290 ALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHARS 348

Query: 425 VE-LGEFAARRILALDPEDVSSYVMLS 450
           +E +  F   + + L P DV+   +LS
Sbjct: 349 LEVMILFEKMQQMGLSPNDVTFVSVLS 375



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 14/249 (5%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +LC C +  +L++   LH+ A    ++     +      A+      CG   D       
Sbjct: 171 VLCACAAKCALSECQLLHAFAIKAAMD-----LNVFVATALLDVYAKCGLMKDAVC---- 221

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ +PD +VV+ +++   + +   YE+A+ LF +     ++  +F   SVI +   L  
Sbjct: 222 VFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAA 281

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  GKQ++A  +K G  SN+FV S+++D+Y K   IEE+ +VF D    NVV +  MI G
Sbjct: 282 MIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISG 341

Query: 184 LLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVP 238
           L +  R  + + LF++M       N V++ +++      G   +    F  M +E  L P
Sbjct: 342 LSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAP 401

Query: 239 NHSTLPCAI 247
           N     C +
Sbjct: 402 NVFHYSCMV 410


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 173/472 (36%), Positives = 266/472 (56%), Gaps = 42/472 (8%)

Query: 49   VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
            + CGS  D       +FD++   +V +   +IG  A+Q    EA+ LF +M      P  
Sbjct: 570  IRCGSIDD----ARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDA 625

Query: 109  FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             TF +++ ++   E L   K++H+ AT  GL  ++ VG+A++  Y K  +++ A +VF+D
Sbjct: 626  TTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDD 684

Query: 169  THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                           M  RNV +W  MIGG +Q G   +A + F
Sbjct: 685  -------------------------------MVERNVTTWTMMIGGLAQHGCGHDAFSHF 713

Query: 229  IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            ++MLREG+VP+ +T    + A A+  AL   K  H  AV      D+ VGN+L+  YAKC
Sbjct: 714  LQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKC 773

Query: 289  GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            GS++D+  VFD + ER++ +W  +I G AQ+GRG EA++FF +M+  G +PNG + + +L
Sbjct: 774  GSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVL 833

Query: 349  WACNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
             AC+H GLV++G   F   +Q    +P M   EHY CMVDLL R+G  +EA+ F+ ++P 
Sbjct: 834  TACSHAGLVDEGRRQFLSMTQDYGIEPTM---EHYTCMVDLLGRAGLLEEAELFILNMPI 890

Query: 406  DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
            +P    W ALLG C  + N+E+ EFAA+  L L P+  S+YV+LSN  +  GKW+    +
Sbjct: 891  EPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLV 950

Query: 466  RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            R  M+ KG+ + PG SWIE+ +++H FV GD +H  + EIYA L    E+++
Sbjct: 951  RSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLK 1002



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 129/431 (29%), Positives = 214/431 (49%), Gaps = 44/431 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           + CG    +     QVFD++   N+   TT+IG +A+  H E+A+ ++ +M     +P+E
Sbjct: 164 IRCG----RLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNE 219

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T+ S++ +     +L  GK++HA   + G QS+V V +A++++Y+K  SIE+A  +F+ 
Sbjct: 220 ITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD- 278

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                         +M  RNV+SW  MIGG +  GR +EA +LF
Sbjct: 279 ------------------------------KMVERNVISWTVMIGGLAHYGRGQEAFHLF 308

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           ++M REG +PN  T    + A A+  AL   K  H+ AV     LD+ VGN+L+  YAK 
Sbjct: 309 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 368

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS++D+ +VFD +TER+I +W  +I G AQ+GRG+EA   F +M+ NG  PN  T L +L
Sbjct: 369 GSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSIL 428

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDP 407
            A          +        E+ G +        ++ + ++ G   +A+  ++D   D 
Sbjct: 429 NASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDAR-LVFDGMCDR 487

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPE----DVSSYVMLSNALSVAGKWDNVS 463
            +  W A++GG    +    G  A    L +  E    D ++Y+ L N        + V+
Sbjct: 488 DVISWNAMMGGL---AQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVN 544

Query: 464 NIRREMKEKGM 474
            + +   E G+
Sbjct: 545 EVHKHAVETGL 555



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 200/431 (46%), Gaps = 49/431 (11%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF- 111
           ++S        VFD + + ++ S T +IG  A+    +EA  LF +M      P+  T+ 
Sbjct: 366 AKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYL 425

Query: 112 ----GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
                S I S++ALE +   K +H  A + G  S++ +G+A++ +Y K  SI++A  VF+
Sbjct: 426 SILNASAIASTSALEWV---KVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFD 482

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                                           M  R+V+SWNAM+GG +Q G   EA  +
Sbjct: 483 G-------------------------------MCDRDVISWNAMMGGLAQNGCGHEAFTV 511

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F++M +EGLVP+ +T    +    +  AL      H  AV+     D  VG++ I  Y +
Sbjct: 512 FLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIR 571

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CGS++D+ L+FDKL+ R++ TWNA+I G AQ   G EA+  F +M+  G  P+  T + +
Sbjct: 572 CGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINI 631

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L A      +E      S A   D G++       +V   S+ G  K AK+   D+  + 
Sbjct: 632 LSANVDEEALEWVKEVHSHAT--DAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDM-VER 688

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPE----DVSSYVMLSNALSVAGKWDNVS 463
            +  W  ++GG   H     G  A    L +  E    D ++YV + +A +  G  + V 
Sbjct: 689 NVTTWTMMIGGLAQHG---CGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVK 745

Query: 464 NIRREMKEKGM 474
            +       G+
Sbjct: 746 EVHNHAVSAGL 756



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 109/232 (46%), Gaps = 31/232 (13%)

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           + K  H C +K   + +++V N L+  Y +CG ++ +  VFDKL ++NI  W  +I GYA
Sbjct: 136 LAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYA 195

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN-----------HTGLVEKGYSYFSQ 366
           + G  E+A+  +++MR    +PN +T L +L AC            H  +++ G+   S 
Sbjct: 196 EYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQ--SD 253

Query: 367 AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            ++E            +V++  + G  ++A + ++D   +  +  W  ++GG   +    
Sbjct: 254 VRVE----------TALVNMYVKCGSIEDA-QLIFDKMVERNVISWTVMIGGLAHYGR-- 300

Query: 427 LGEFAARRILALDPE----DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
            G+ A    L +  E    +  +YV + NA + AG  + V  +       G+
Sbjct: 301 -GQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGL 351


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 266/471 (56%), Gaps = 38/471 (8%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D      ++FDE+P+ + VS   II  +A    ++ A  LF  +        +F F 
Sbjct: 296 SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFA 355

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  ++   D  +G+Q+HA        S + VG++++D+Y K                 
Sbjct: 356 TMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAK----------------- 398

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG     +FE+A  +F  + HR+ V W AMI  Y Q G  EE + LF +M 
Sbjct: 399 ---------CG-----KFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMR 444

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           +  ++ + +T    + A+A+IA+L +GK  H+  +K     +VF G++L+  YAKCGS++
Sbjct: 445 QASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIK 504

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D++  F ++ +RNIV+WNA+I  YAQNG  E  ++ F+ M ++G++P+ V+ LG+L AC+
Sbjct: 505 DAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS 564

Query: 353 HTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H+GLVE+G  +F   +Q    DP   + EHYA +VD+L RSGRF EA++ + ++P DP  
Sbjct: 565 HSGLVEEGLWHFNSMTQIYKLDP---RREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDE 621

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRRE 468
             W ++L  C+IH N EL   AA ++  ++   D + YV +SN  + AG+W+NVS + + 
Sbjct: 622 IMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKA 681

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           M+++G+ ++P  SW+EIK + H+F   DR H   +EI   +   T+ + E 
Sbjct: 682 MRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEEL 732



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 172/367 (46%), Gaps = 37/367 (10%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S       ++FD + +   V+ T +IG +++ + ++EA  LF +M      P   TF +
Sbjct: 95  KSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVT 154

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++      E  N   Q+     K+G  S + VG+ ++D Y K                  
Sbjct: 155 LLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCK------------------ 196

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                          R + A +LF+EMP  + VS+NAMI GYS+ G +E+AVNLF+EM  
Sbjct: 197 -------------SNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQN 243

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            GL P   T    + A   +  + +G+  H+  +K     +VFV N+L+ FY+K  S+ D
Sbjct: 244 SGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVID 303

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +FD++ E++ V++N +I GYA +G+ + A + F  ++             +L   ++
Sbjct: 304 ARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASN 363

Query: 354 TGLVEKGYSYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           T   E G    +Q      D  +L       +VD+ ++ G+F+EA+    +L     +  
Sbjct: 364 TLDWEMGRQIHAQTIVTTADSEILVGN---SLVDMYAKCGKFEEAEMIFTNLTHRSAVP- 419

Query: 412 WKALLGG 418
           W A++  
Sbjct: 420 WTAMISA 426



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 4/234 (1%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN+   + A   K G   +    +  +  ++K   + +A ++FE   + N VS   MI G
Sbjct: 33  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 92

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +K     +A KLF  M  R  V+W  +IGGYSQ  + +EA  LF++M R G  P++ T 
Sbjct: 93  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 152

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              +++  N   +G   +     +  LG    + VGN+L+  Y K   ++ +  +F ++ 
Sbjct: 153 -VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP 211

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           E + V++NA+I GY+++G  E+A+  F  M+ +G++P   T   +L  C + GL
Sbjct: 212 EIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGL 263


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/489 (35%), Positives = 274/489 (56%), Gaps = 46/489 (9%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T     G      S   ++ +E  +L+VV+ T +I  +A++    EA+ +F +M   
Sbjct: 435 AMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDC 494

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ--------SNVFVGSAILDLYI 154
             RP+  T  S++ +  ++  L  GK+ H +A K  L          ++ V + ++D+Y 
Sbjct: 495 GSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYA 554

Query: 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
           K  S E A ++F D+ +P                              R+VV+W  MIGG
Sbjct: 555 KCQSTEVARKMF-DSVSPK----------------------------DRDVVTWTVMIGG 585

Query: 215 YSQTGRNEEAVNLFIEMLR--EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK-FLG 271
           Y+Q G    A+ LF  M +  + + PN  TL CA++A A +AAL  G+  HA  ++ F G
Sbjct: 586 YAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYG 645

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
            + +FV N LI  Y+K G ++ + +VFD + +RN V+W +++ GY  +GRGE+A+  F+ 
Sbjct: 646 SVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDE 705

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLS 388
           MR   + P+G+T L +L+AC+H+G+V+ G ++F++   +   DPG   PEHYACMVDL  
Sbjct: 706 MRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPG---PEHYACMVDLWG 762

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVM 448
           R+GR  EA + + ++P +P    W ALL  C++HSNVELGEFAA R+L L+  +  SY +
Sbjct: 763 RAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTL 822

Query: 449 LSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAV 508
           LSN  + A +W +V+ IR  MK  G+ + PGCSWI+ +  V  F  GDR+H  + +IY  
Sbjct: 823 LSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYET 882

Query: 509 LRSCTEQIR 517
           L    ++I+
Sbjct: 883 LADLIQRIK 891



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 72/379 (18%)

Query: 90  EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAI 149
            +   L+ +M  L   P  +TF  V  +   L  L+LG  LHA  ++ G  SNVFV +A+
Sbjct: 241 RDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAV 300

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           + +Y K  ++  A  +F+D  +  +                            +++VSWN
Sbjct: 301 VSMYGKCGALRHAHNMFDDLCHRGI----------------------------QDLVSWN 332

Query: 210 AMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
           +++  Y        A+ LF +M  R  + P+  +L   + A A++AA   G+  H  +++
Sbjct: 333 SVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIR 392

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
                DVFVGN+++  YAKCG ME++  VF ++  +++V+WNA++ GY+Q GR E A+  
Sbjct: 393 SGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSL 452

Query: 329 FERMRINGI-----------------------------------RPNGVTLLGLLWACNH 353
           FERM    I                                   RPN VTL+ LL AC  
Sbjct: 453 FERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVS 512

Query: 354 TGLVEKG---YSYFSQAKLE----DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PF 405
            G +  G   + Y  +  L     DPG    +    ++D+ ++    + A++    + P 
Sbjct: 513 VGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPK 572

Query: 406 DPGIGFWKALLGGCQIHSN 424
           D  +  W  ++GG   H +
Sbjct: 573 DRDVVTWTVMIGGYAQHGD 591



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 14/235 (5%)

Query: 193 ALKLFQEMPHR--NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
           A+ L + +P    +V  WN +I      G   +   L+ +M   G  P+H T P    A 
Sbjct: 210 AILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKAC 269

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI---V 307
           AN+++L +G S HA   +     +VFV N+++S Y KCG++  +  +FD L  R I   V
Sbjct: 270 ANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLV 329

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGI-RPNGVTLLGLLWACNHTGLVEKG---YSY 363
           +WN+V+  Y        A+  F +M    +  P+ ++L+ +L AC       +G   + +
Sbjct: 330 SWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGF 389

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             ++ L D   +       +VD+ ++ G+ +EA +    + F   +  W A++ G
Sbjct: 390 SIRSGLVDDVFVG----NAVVDMYAKCGKMEEANKVFQRMKFKDVVS-WNAMVTG 439


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 266/471 (56%), Gaps = 38/471 (8%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D      ++FDE+P+ + VS   II  +A    ++ A  LF  +        +F F 
Sbjct: 256 SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFA 315

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  ++   D  +G+Q+HA        S + VG++++D+Y K                 
Sbjct: 316 TMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAK----------------- 358

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG     +FE+A  +F  + HR+ V W AMI  Y Q G  EE + LF +M 
Sbjct: 359 ---------CG-----KFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMR 404

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           +  ++ + +T    + A+A+IA+L +GK  H+  +K     +VF G++L+  YAKCGS++
Sbjct: 405 QASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIK 464

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D++  F ++ +RNIV+WNA+I  YAQNG  E  ++ F+ M ++G++P+ V+ LG+L AC+
Sbjct: 465 DAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS 524

Query: 353 HTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H+GLVE+G  +F   +Q    DP   + EHYA +VD+L RSGRF EA++ + ++P DP  
Sbjct: 525 HSGLVEEGLWHFNSMTQIYKLDP---RREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDE 581

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRRE 468
             W ++L  C+IH N EL   AA ++  ++   D + YV +SN  + AG+W+NVS + + 
Sbjct: 582 IMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKA 641

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           M+++G+ ++P  SW+EIK + H+F   DR H   +EI   +   T+ + E 
Sbjct: 642 MRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEEL 692



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 191/434 (44%), Gaps = 39/434 (8%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S       ++FD + +   V+ T +IG +++ + ++EA  LF +M      P   TF +
Sbjct: 90  KSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVT 149

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++      E  N   Q+     K+G  S + VG+ ++D Y K + ++ A ++F++    +
Sbjct: 150 LLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEID 209

Query: 174 VVSYTTMICGLL-----------------------------------KRERFEDALKLFQ 198
             ++  ++C  +                                   K +   DA KLF 
Sbjct: 210 SFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFD 269

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           EMP ++ VS+N +I GY+  G+++ A +LF E+               +  A+N     M
Sbjct: 270 EMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEM 329

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+  HA  +      ++ VGNSL+  YAKCG  E++ ++F  LT R+ V W A+I  Y Q
Sbjct: 330 GRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQ 389

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
            G  EE ++ F +MR   +  +  T   LL A      +  G    S   ++   M    
Sbjct: 390 KGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFI-IKSGFMSNVF 448

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRIL 436
             + ++D+ ++ G  K+A +   ++P D  I  W A++     +   E  L  F    + 
Sbjct: 449 SGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLS 507

Query: 437 ALDPEDVSSYVMLS 450
            L P+ VS   +LS
Sbjct: 508 GLQPDSVSFLGVLS 521



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 145/364 (39%), Gaps = 74/364 (20%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN+   + A   K G   +    +  +  ++K   + +A ++FE   + N VS   MI G
Sbjct: 28  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 87

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +K     +A KLF  M  R  V+W  +IGGYSQ  + +EA  LF++M R G  P++ T 
Sbjct: 88  YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTF 147

Query: 244 PCAIIAAAN--------------IAALGMGK----------------------------- 260
              +++  N              I  LG                                
Sbjct: 148 -VTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP 206

Query: 261 -----SFHACAVKFLGKLDVFVGNSLISF-------------------YAKCGSMEDSLL 296
                +F A     +G  D+ +G  + SF                   Y+K  S+ D+  
Sbjct: 207 EIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARK 266

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +FD++ E++ V++N +I GYA +G+ + A + F  ++             +L   ++T  
Sbjct: 267 LFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLD 326

Query: 357 VEKGYSYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            E G    +Q      D  +L       +VD+ ++ G+F+EA+    +L     +  W A
Sbjct: 327 WEMGRQIHAQTIVTTADSEILVGN---SLVDMYAKCGKFEEAEMIFTNLTHRSAVP-WTA 382

Query: 415 LLGG 418
           ++  
Sbjct: 383 MISA 386


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 168/459 (36%), Positives = 258/459 (56%), Gaps = 7/459 (1%)

Query: 46  TDSVSC---GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           T  +SC    + SD       VFD     +      +I  F+     E ++ L+ RML  
Sbjct: 79  TKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCC 138

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           +   + +TF S++ + + L  L    Q+HA  TK+G +++V+  +++++ Y    + + A
Sbjct: 139 SAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLA 198

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             +F+    P+ VS+ ++I G  K  + + AL LF++M  +N +SW  MI GY Q G ++
Sbjct: 199 HLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHK 258

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+ LF EM    + P++ +L  A+ A A + AL  GK  H+   K   ++D  +G  LI
Sbjct: 259 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLI 318

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKCG M ++L VF  +  +++  W A+I GYA +G G EAI  F  M+  GI+PN +
Sbjct: 319 DMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVI 378

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFL 400
           T   +L AC++TGLVE+G   F    +E    LKP  EHY C+VDLLSR+G   EAK F+
Sbjct: 379 TFTTVLTACSYTGLVEEGKLIFYN--MERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFI 436

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
            ++P  P    W ALL  C+IH N+ELGE     ++A+DP     YV  +N  ++  KWD
Sbjct: 437 QEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWD 496

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
             +  RR MKE+G+ +VPGCS I ++   H F+ GDR+H
Sbjct: 497 KAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSH 535


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 148/437 (33%), Positives = 254/437 (58%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVF ++ + N+    + I  F+     +++ + + +     + P   T+  ++ + T   
Sbjct: 68  QVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKG 127

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L++G Q H    + G  S+V+V ++++ +Y  L  I+ A+ VF      +VVS+T+M+ 
Sbjct: 128 SLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVA 187

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G +K      A KLF +MP +N+V+W+ MI GY++    ++A+ L+  +  EG+  N + 
Sbjct: 188 GYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETV 247

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   I + A++ AL +G+  H   ++    +++ +G +L+  YA+CGS++ ++ VFD+L 
Sbjct: 248 MVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLP 307

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R+ ++W  +I G+A +G  E+A+E+F RM   G+ P  +T   +L AC+H GLVE+G  
Sbjct: 308 GRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLE 367

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            F   K +     + EHY CMVDLL R+G+  EA++F+ ++P  P    W ALLG C+IH
Sbjct: 368 LFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIH 427

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N E+ E A + ++ L PE    YV+LSN  +   KW+NV NIR+ MKE+G+ + PG + 
Sbjct: 428 KNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTL 487

Query: 483 IEIKSKVHVFVTGDRNH 499
            E+  KVH F  GD+ H
Sbjct: 488 FEMDGKVHKFTIGDKTH 504



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 167/393 (42%), Gaps = 80/393 (20%)

Query: 96  FSRMLL--LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLY 153
           FS ++L  L ++  + +F   + S T L  L   K +HA   +     +VF  S ++ + 
Sbjct: 4   FSNLVLRKLELKNPKLSF---LESCTTLSHL---KIIHAHLIRAHTIFDVFAASCLISIS 57

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
           I  + ++ A +VF    NPN+  Y                               N+ I 
Sbjct: 58  INKNLLDYAAQVFYQIQNPNLFIY-------------------------------NSFIR 86

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           G+S +   +++ + +++  R GLVP++ T P  + A     +L MG   H   ++     
Sbjct: 87  GFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDS 146

Query: 274 DVFVGNSLISFYAKCGSMEDSLLV-------------------------------FDKLT 302
           DV+V NSL++ Y+  G ++ +  V                               FDK+ 
Sbjct: 147 DVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMP 206

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEK 359
           E+N+VTW+ +I GYA+N   ++AIE +  ++  G+  N   ++ ++ +C H G   L E+
Sbjct: 207 EKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGER 266

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            + Y  + K+    +L       +VD+ +R G   +A      LP    +  W  L+ G 
Sbjct: 267 AHDYILRNKMTVNLILG----TALVDMYARCGSIDKAIWVFDQLPGRDALS-WTTLIAGF 321

Query: 420 QIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
            +H   E  L  F+      L P +++   +LS
Sbjct: 322 AMHGYAEKALEYFSRMEKAGLTPREITFTAVLS 354



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 101/193 (52%), Gaps = 4/193 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+   +S   +S  ++FD++P+ N+V+ + +I  +AK   +++AI L+  +    + 
Sbjct: 183 TSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVH 242

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
            +E    SVI S   L  L LG++ H +  +  +  N+ +G+A++D+Y +  SI++A  V
Sbjct: 243 ANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWV 302

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRN 221
           F+     + +S+TT+I G       E AL+ F  M    +    +++ A++   S  G  
Sbjct: 303 FDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLV 362

Query: 222 EEAVNLFIEMLRE 234
           E  + LF  M R+
Sbjct: 363 ERGLELFESMKRD 375


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 252/454 (55%), Gaps = 35/454 (7%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           SV     S    SV +VFDE+ + +VVS  T++   A++  + EA+ L  +M     RP 
Sbjct: 111 SVGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPD 170

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            FT  SV+P      D+  G ++H +A + G  ++VFVGS+++D+Y   +          
Sbjct: 171 SFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCT---------- 220

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                                R + ++K+F  +P R+ + WN+++ G +Q G  EEA+ +
Sbjct: 221 ---------------------RTDYSVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGI 259

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F  ML+ G+ P   T    I    N+A+L  GK  HA  ++   + +VF+ +SLI  Y K
Sbjct: 260 FRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCK 319

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG +  +  +FD++   ++V+W A+I GYA +G   EA+  FERM +   +PN +T L +
Sbjct: 320 CGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAV 379

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPF 405
           L AC+H GLV+KG+ YF    + D   + P  EH A + D+L R+G   EA  F+  +  
Sbjct: 380 LTACSHAGLVDKGWKYFKS--MSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQI 437

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
            P    W  LL  C++H N  L E  A++I+ L+P  + S+V+LSN  S +G+W+  +++
Sbjct: 438 KPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHL 497

Query: 466 RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           R+ M++KGM + P CSWIE+K+K+HVFV  DR+H
Sbjct: 498 RKSMRKKGMKKDPACSWIEVKNKLHVFVAHDRSH 531



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 165/344 (47%), Gaps = 22/344 (6%)

Query: 84  AKQHHYEEAIYLFSRMLLLNIRPSEF--TFGSVIPSSTALEDLNLGKQLHAWATKVGLQS 141
           A Q H+ +AI LF RM       S    +  + + S  AL    LG  LHA A + G  +
Sbjct: 25  AAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFA 84

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           + F  +A+L+LY KL             H+  V S    + G       E   K+F EM 
Sbjct: 85  DRFTANALLNLYCKLPC--------SYLHSTGVTS----VGGTGSSTALESVRKVFDEMI 132

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            R+VVSWN ++ G ++ GR+ EA+ L  +M REG  P+  TL   +   A  A +  G  
Sbjct: 133 ERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSE 192

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            H  AV+     DVFVG+SLI  YA C   + S+ VFD L  R+ + WN+V+ G AQNG 
Sbjct: 193 VHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCAQNGS 252

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPE 378
            EEA+  F RM   G+RP  VT   L+  C +   +  G   ++Y  +   ED   +   
Sbjct: 253 VEEALGIFRRMLQTGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFIS-- 310

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
             + ++D+  + G    A   ++D    P +  W A++ G  +H
Sbjct: 311 --SSLIDMYCKCGEISIAHH-IFDRMCSPDVVSWTAMIMGYALH 351


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 260/468 (55%), Gaps = 36/468 (7%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D   S  +VFD  P  ++VS TT+I  + K     E + LF  M   N++    T   V+
Sbjct: 174 DVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVL 233

Query: 116 PSSTALEDLNLGKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
            S   L DL LG++LH +  +   +  +VFVG+A++D+Y+K                   
Sbjct: 234 SSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLK------------------- 274

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                  CG     R     K+FQEMP +NVVSWN+MI G +Q G+ +E++ +F +M R 
Sbjct: 275 -------CGDANFAR-----KVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL 322

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ P+  TL   + + AN+  L +GK  HA   +   + D F+GN+L+  YAKCGS++ +
Sbjct: 323 GVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQA 382

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VF  +  +++ ++ A+I G A +G+G +A++ F  M   GI P+ VT +G+L AC+H 
Sbjct: 383 CWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHV 442

Query: 355 GLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           GLVE+G  YF    +     L+P  EHY CMVDLL R+G   EA+EF+ ++P +P     
Sbjct: 443 GLVEEGRKYFED--MSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVL 500

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALLG C+IH  VELGE   ++I  ++P    +YV++SN  S A +W +   +R+ MKE+
Sbjct: 501 GALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKER 560

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
            + + PGCS IE+   +H F  GD++H    EIY +L      ++  E
Sbjct: 561 NLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKNNE 608



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 188/382 (49%), Gaps = 43/382 (11%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           P+L + +A  I G     +   E + ++ +ML   I P  +T   V+ +      +  G+
Sbjct: 87  PNLPLYNAI-IRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGE 145

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++H  A K+GL S+V+V + ++ +Y                           +C +++  
Sbjct: 146 EVHGQAIKMGLASDVYVSNTLMRMY--------------------------AVCDVIRSA 179

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
           R     K+F   P R++VSW  MI GY + G   E V LF EM  E L  +  TL   + 
Sbjct: 180 R-----KVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLS 234

Query: 249 AAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
           + A +  L +G+  H   ++     LDVFVGN+L+  Y KCG    +  VF ++  +N+V
Sbjct: 235 SCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVV 294

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYF 364
           +WN++I G AQ G+ +E++  F +M+  G++P+ VTL+ +L +C + G++E G   ++Y 
Sbjct: 295 SWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYL 354

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            + ++   G +       +VD+ ++ G   +A  +++       +  + A++ G  +H  
Sbjct: 355 DRNQIRADGFIG----NALVDMYAKCGSIDQAC-WVFQAMNRKDVYSYTAMIVGLAMHGQ 409

Query: 425 --VELGEFAARRILALDPEDVS 444
               L  F+    + ++P++V+
Sbjct: 410 GGKALDLFSEMPKMGIEPDEVT 431



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 114/217 (52%), Gaps = 12/217 (5%)

Query: 19  KLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT 78
           KLH     Y+I     ++      A+    + CG  +       +VF E+P  NVVS  +
Sbjct: 247 KLH----RYIIRNSNVNLDVFVGNALVDMYLKCGDAN----FARKVFQEMPVKNVVSWNS 298

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I   A++  ++E++Y+F +M  L ++P + T  +V+ S   L  L LGK +HA+  +  
Sbjct: 299 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQ 358

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           ++++ F+G+A++D+Y K  SI++A  VF+  +  +V SYT MI GL    +   AL LF 
Sbjct: 359 IRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFS 418

Query: 199 EMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEM 231
           EMP   +    V++  ++   S  G  EE    F +M
Sbjct: 419 EMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDM 455


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 253/468 (54%), Gaps = 34/468 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S + +F     VFD +   NVVS  +++  + +    EEA+ +F  M+   + P+EF   
Sbjct: 259 SRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALS 318

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+    A   + LG+QLH  A K  L +++ V +A+L +Y +   +EE   +     NP
Sbjct: 319 IVL---GACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP 375

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           ++VS                               W   I    Q G  E+A+ L  +M 
Sbjct: 376 DLVS-------------------------------WTTAISANFQNGFGEKAIALLCQMH 404

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            EG  PN       + + A++A+L  G  FH  A+K     ++  GN+LI+ Y+KCG M 
Sbjct: 405 SEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMG 464

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            + L FD +   ++ +WN++I G+AQ+G   +A+E F +MR NGI+P+  T LG+L  CN
Sbjct: 465 SARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCN 524

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+G+VE+G  +F     +      P HYACM+D+L R+GRF EA   + D+PF+P    W
Sbjct: 525 HSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIW 584

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           K LL  C++H N+++G+ AA R++ L   D +SYV++SN  ++ G+W++   +RR M E 
Sbjct: 585 KTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDET 644

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           G+ +  GCSWIEI ++VH F + D +H  +D IY +L      +++F+
Sbjct: 645 GVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQDFD 692



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 202/463 (43%), Gaps = 83/463 (17%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S + +    +FD +P  NVV+ T+++  + +    E A+ +F+ M+   + P++F   +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + +   L  L  G+Q+H+ A + G   + ++GS ++++Y +  S+  A  VF+   +P+
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEM------PH------------------------- 202
           VV YT++I    +   FE A +   +M      P+                         
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 203 ------RNVVSWNAMIGGYSQTG-------------------------------RNEEAV 225
                 ++V S  A+I  YS+ G                               R EEA+
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEAL 299

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            +F +M+ EG+ PN   L   + A  +I   G+G+  H  A+K     D+ V N+L+S Y
Sbjct: 300 QVFGDMISEGVDPNEFALSIVLGACGSI---GLGRQLHCSAIKHDLITDIRVSNALLSMY 356

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            + G +E+   + +K+   ++V+W   I    QNG GE+AI    +M   G  PNG    
Sbjct: 357 GRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFS 416

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC----MVDLLSRSGRFKEAKEFLY 401
            +L +C     +++G  +   A       L  +   C    ++++ S+ G+   A+   +
Sbjct: 417 SVLSSCADVASLDQGMQFHCLAL-----KLGCDSEICTGNALINMYSKCGQMGSAR-LAF 470

Query: 402 DLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPED 442
           D+     +  W +L+ G   H  +N  L  F+  R   + P+D
Sbjct: 471 DVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDD 513



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 129/229 (56%), Gaps = 7/229 (3%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P+VV     +  L+K  R  DAL LF  MP +NVV+W +++ GY++ GR E A+ +F +
Sbjct: 45  SPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFAD 104

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+  G+ PN      A++A A++ AL  G+  H+ AV+     D ++G+ LI  Y++CGS
Sbjct: 105 MVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGS 164

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  VFD++   ++V + ++I  + +NG  E A E   +M   G++PN  T+  +L A
Sbjct: 165 LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTA 224

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAK 397
           C    L ++ + Y     ++  G+     Y+   ++D  SR+G FK AK
Sbjct: 225 CPRV-LGQQIHGYL----IKKIGLRSQSVYSSTALIDFYSRNGEFKLAK 268



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           DV +    ++   K G + D+L +FD++  +N+V W +V+ GY +NGR E A+  F  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            +G+ PN       L AC   G +  G   +S   +A       +     +C++++ SR 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIG----SCLIEMYSRC 162

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDVSSYVM 448
           G    AKE ++D    P +  + +L+     +   EL   A  ++L   L P + +   +
Sbjct: 163 GSLPAAKE-VFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTI 221

Query: 449 LSNALSVAGK 458
           L+    V G+
Sbjct: 222 LTACPRVLGQ 231


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 172/526 (32%), Positives = 272/526 (51%), Gaps = 71/526 (13%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD +P  N+VS T +I   ++   + EAI  F  M +    P++F F S I +  +L 
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            + +GKQ+H  A K G+ S +FVGS + D+Y K  ++ +A +VFE+    + VS+T MI 
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 183 GLLKRERFEDALKLFQEM------------------------------PHRNVVSW---- 208
           G  K   FE+AL  F++M                               H +VV      
Sbjct: 181 GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFES 240

Query: 209 -----NAMIGGYSQTGRNEEAVN--------------------------------LFIEM 231
                NA+   YS+ G  E A N                                +F+E+
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            R+G+ PN  T    I A AN AAL  G   HA  +K     D FV + L+  Y KCG +
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           E ++  FD++ +   + WN+++  + Q+G G++AI+FFERM   G++PN +T + LL  C
Sbjct: 361 EHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGC 420

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GLVE+G  YF         +   EHY+C++DLL R+GR KEAKEF+  +PF+P    
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFG 480

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W + LG C+IH + E+G+ AA +++ L+P++  + V+LSN  +   +W++V ++R  M++
Sbjct: 481 WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRD 540

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
             + ++PG SW+++  K HVF   D +H     IY  L    +QI+
Sbjct: 541 GNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIK 586



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 122/252 (48%), Gaps = 31/252 (12%)

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VI +    + L  GKQLHA     G     F+ + ++++Y K                  
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSK------------------ 52

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                   CG L     + ALKLF  MP RN+VSW AMI G SQ  +  EA+  F  M  
Sbjct: 53  --------CGEL-----DHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRI 99

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G VP       AI A A++ ++ MGK  H  A+KF    ++FVG++L   Y+KCG+M D
Sbjct: 100 CGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFD 159

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VF+++  ++ V+W A+I GY++ G  EEA+  F++M    +  +   L   L AC  
Sbjct: 160 ACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGA 219

Query: 354 TGLVEKGYSYFS 365
               + G S  S
Sbjct: 220 LKACKFGRSVHS 231



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           TD  S   + +  S+V  +  E    NVVS T +I  + +    E+ + +F  +    I 
Sbjct: 249 TDMYSKAGDMESASNVFGIDSECR--NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 306

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+EFTF S+I +      L  G QLHA   K+    + FV S ++D+Y K   +E A + 
Sbjct: 307 PNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQA 366

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRN 221
           F++  +P  +++ +++    +    +DA+K F+ M  R    N +++ +++ G S  G  
Sbjct: 367 FDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLV 426

Query: 222 EEAVNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSF 262
           EE ++ F  M +  G+VP      C I        L   K F
Sbjct: 427 EEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEF 468


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 268/472 (56%), Gaps = 2/472 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPS 107
           VS  ++S        +FDE P  ++   ++++   +     E  + L  RML  + +RP 
Sbjct: 45  VSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRPD 104

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            F   S+  ++  L  L LGKQLH         S+  V S+++D+Y K    ++A +VF+
Sbjct: 105 HFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFD 164

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                N V +T +I G +   R ++AL+LF+ MP R + +W A+I G+ ++G +  AV L
Sbjct: 165 SIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKL 224

Query: 228 FIEMLREGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           F++M R+G+ + +   L  AI  AA++AA  +G+  H+  ++      + VGN+++  Y+
Sbjct: 225 FVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYS 284

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KC  +  +  VF+++T R+I++W  ++ G AQ+GR EEA   ++RM + G++PN VT +G
Sbjct: 285 KCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVG 344

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           L++AC+H GLV+KG   F   K E     + +HY C +DLLSRSG   EA+E +  +P+ 
Sbjct: 345 LIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYV 404

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W +LL  C+ ++N E+    A  +L L P+  S+YV+LSN  +V GKWD+V  +R
Sbjct: 405 PDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVR 464

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + M +  + + PG SWIE+  +  +F  G+    + +EI   L     ++R+
Sbjct: 465 KLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILGFLEELVSEMRQ 516



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 10/184 (5%)

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVP 238
           ++    K     D   LF E P R++  +++++   S +   E  + L   ML  + L P
Sbjct: 44  LVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRP 103

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +H  L     A A + +L +GK  H   V      D  V +SLI  Y KCG  +D+  VF
Sbjct: 104 DHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVF 163

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D +  +N V W A+I GY  NGR +EA+E F  M        G TL    W    +G V 
Sbjct: 164 DSIVAKNSVMWTALISGYVLNGRSDEALELFRSM-------PGRTLFA--WTALISGFVR 214

Query: 359 KGYS 362
            G S
Sbjct: 215 SGES 218


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 170/470 (36%), Positives = 269/470 (57%), Gaps = 41/470 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS     +   ++FD + + +++S T +IG +A+  + +EA  L  +M     +P+  T
Sbjct: 177 CGS----INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAIT 232

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + S++ +  +   L   K++H  A   GL+ +V VG+A++ +Y K  SI++A  VF+   
Sbjct: 233 YVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFD--- 289

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        M  R+VVSWN MIG +++ GR  EA +LF++
Sbjct: 290 ----------------------------RMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQ 321

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  EG  P+       + A A+  AL   K  H  A+    ++DV VG +L+  Y+K GS
Sbjct: 322 MQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGS 381

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++D+ +VFD++  RN+V+WNA+I G AQ+G G++A+E F RM  +G++P+ VT + +L A
Sbjct: 382 IDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSA 441

Query: 351 CNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C+H GLV++G S +   +Q    +P +    H  CMVDLL R+GR  EAK F+ ++  DP
Sbjct: 442 CSHAGLVDEGRSQYLAMTQVYGIEPDV---SHCNCMVDLLGRAGRLMEAKLFIDNMAVDP 498

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W ALLG C+ + NVELGE  A+  L LDP++ ++YV+LSN  + AGKWD VS +R 
Sbjct: 499 DEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRT 558

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            M+E+G+ + PG SWIE+ +K+H F+  D +H    EI        E+I+
Sbjct: 559 MMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIK 608



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 206/410 (50%), Gaps = 44/410 (10%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E  +      VFD +   +  S   +I  + +  H E+A+ LF  M    ++P+  T+  
Sbjct: 75  ECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMI 134

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++ +  +L  L  GK++HA     GL+S+V VG+A+L +Y K  SI EA R+F++  N +
Sbjct: 135 ILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHD 194

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           ++S+T                                MIG Y+Q+G  +EA  L ++M +
Sbjct: 195 IISWTV-------------------------------MIGAYAQSGNGKEAYRLMLQMEQ 223

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG  PN  T    + A A+  AL   K  H  A+    +LDV VG +L+  YAK GS++D
Sbjct: 224 EGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDD 283

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + +VFD++  R++V+WN +I  +A++GRG EA + F +M+  G +P+ +  L +L AC  
Sbjct: 284 ARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACAS 343

Query: 354 TGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            G +E        A   D G+ +       +V + S+SG   +A+  ++D      +  W
Sbjct: 344 AGALEWVKKIHRHAL--DSGLEVDVRVGTALVHMYSKSGSIDDAR-VVFDRMKVRNVVSW 400

Query: 413 KALLGGCQIHSNVELGEFAA---RRILA--LDPEDVSSYVMLSNALSVAG 457
            A++ G   H    LG+ A    RR+ A  + P+ V ++V + +A S AG
Sbjct: 401 NAMISGLAQHG---LGQDALEVFRRMTAHGVKPDRV-TFVAVLSACSHAG 446



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 175/391 (44%), Gaps = 46/391 (11%)

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150
           EAI +    L   +    F +  V+      +DL   KQ+H    K  ++ N  V + +L
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
            +YI+                          CG     R ++A  +F  +  ++  SWNA
Sbjct: 71  HVYIE--------------------------CG-----RLQEARCVFDALVKKSGASWNA 99

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           MI GY +    E+A+ LF EM  EG+ PN  T    + A A+++AL  GK  HAC     
Sbjct: 100 MIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGG 159

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            + DV VG +L+  Y KCGS+ ++  +FD L   +I++W  +I  YAQ+G G+EA     
Sbjct: 160 LESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLML 219

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGL---VEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
           +M   G +PN +T + +L AC   G    V++ + +   A LE    L       +V + 
Sbjct: 220 QMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLE----LDVRVGTALVQMY 275

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE----DV 443
           ++SG   +A+  ++D      +  W  ++G    H     G  A    L +  E    D 
Sbjct: 276 AKSGSIDDAR-VVFDRMKVRDVVSWNVMIGAFAEHGR---GHEAYDLFLQMQTEGCKPDA 331

Query: 444 SSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
             ++ + NA + AG  + V  I R   + G+
Sbjct: 332 IMFLSILNACASAGALEWVKKIHRHALDSGL 362



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 150/345 (43%), Gaps = 20/345 (5%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + +L  C S  +L  + ++H  A +  +E             + T  V   ++S      
Sbjct: 234 VSILNACASEGALKWVKRVHRHALDAGLELD---------VRVGTALVQMYAKSGSIDDA 284

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
             VFD +   +VVS   +IG FA+     EA  LF +M     +P    F S++ +  + 
Sbjct: 285 RVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASA 344

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L   K++H  A   GL+ +V VG+A++ +Y K  SI++A  VF+     NVVS+  MI
Sbjct: 345 GALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMI 404

Query: 182 CGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGL 236
            GL +    +DAL++F+ M    V    V++ A++   S  G  +E  + ++ M +  G+
Sbjct: 405 SGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGI 464

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            P+ S   C +        L   K F           D     +L+      G++E   L
Sbjct: 465 EPDVSHCNCMVDLLGRAGRLMEAKLF---IDNMAVDPDEATWGALLGSCRTYGNVELGEL 521

Query: 297 VFD---KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           V     KL  +N  T+  +   YA+ G+ +        MR  GIR
Sbjct: 522 VAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIR 566


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 182/517 (35%), Positives = 279/517 (53%), Gaps = 48/517 (9%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +L  C S  +L +  ++H+        T KA+++  E   ++   +   ++S+      +
Sbjct: 337 VLTSCGSREALEQGRQVHAY-------TIKANLESDEF--VKNGLIDMYAKSNLLIDAKK 387

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD + + NV+S   +I  ++ Q    EA+ LF  M +    PS  TF S++  S +L  
Sbjct: 388 VFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFA 447

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L L KQ+H    K G+  ++F GSA++D+Y K S +++A  VFE                
Sbjct: 448 LELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFE---------------- 491

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          EM  +++V WNAM  GY+Q   NEEA+ L+  +      PN  T 
Sbjct: 492 ---------------EMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTF 536

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I AA+N+A+L  G+ FH   VK       FV N+L+  YAKCGS+E++  +F+    
Sbjct: 537 AALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIW 596

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R++V WN++I  +AQ+G  EEA+  F  M   GI+PN VT + +L AC+H G VE G ++
Sbjct: 597 RDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNH 656

Query: 364 FSQAKLEDPGM-LKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F+      PG  +KP  EHYAC+V LL RSG+  EAKEF+  +P +P    W++LL  C+
Sbjct: 657 FNSM----PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACR 712

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           I  NVELG++AA   ++ DP+D  SY++LSN  +  G W +V  +R  M    + + PG 
Sbjct: 713 IAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGR 772

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           SWIE+ +KV+VF+  D  H   D I +VL    + I+
Sbjct: 773 SWIEVNNKVNVFIARDTTHREAD-IGSVLDILIQHIK 808



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 191/374 (51%), Gaps = 40/374 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPS 107
           ++  S+SD+  +   VFD++P  N+++ ++++  +++Q + EEA+ +F  +   +   P+
Sbjct: 69  INVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPN 128

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           EF   SVI + T L  +  G QLH +  + G   +V+VG++++D Y K  +IEEA  VF+
Sbjct: 129 EFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFD 188

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                                          ++  +  V+W  +I GY++ GR+  ++ L
Sbjct: 189 -------------------------------QLSEKTAVTWTTIIAGYTKCGRSAVSLEL 217

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F +M    +VP+   +   + A + +  L  GK  HA  ++   ++DV V N LI FY K
Sbjct: 218 FAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTK 277

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C  ++    +FD++  +NI++W  +I GY QN    EA++ F  M   G +P+G     +
Sbjct: 278 CNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSV 337

Query: 348 LWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           L +C     +E+G   ++Y  +A LE    +K      ++D+ ++S    +AK+ ++D+ 
Sbjct: 338 LTSCGSREALEQGRQVHAYTIKANLESDEFVKN----GLIDMYAKSNLLIDAKK-VFDVM 392

Query: 405 FDPGIGFWKALLGG 418
            +  +  + A++ G
Sbjct: 393 AEQNVISYNAMIEG 406



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/285 (31%), Positives = 142/285 (49%), Gaps = 31/285 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD++ +   V+ TTII  + K      ++ LF++M   N+ P  +   SV+ + + LE 
Sbjct: 186 VFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 245

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+HA+  + G + +V V + ++D Y K                          C 
Sbjct: 246 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTK--------------------------CN 279

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +K  R     KLF +M  +N++SW  MI GY Q   + EA+ LF EM R G  P+    
Sbjct: 280 RVKAGR-----KLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFAC 334

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + +  +  AL  G+  HA  +K   + D FV N LI  YAK   + D+  VFD + E
Sbjct: 335 TSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE 394

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           +N++++NA+I GY+   +  EA+E F  MR+    P+ +T + LL
Sbjct: 395 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 439



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 153/317 (48%), Gaps = 34/317 (10%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           N+RP    F +++  S +   +   K +H      GLQS+ F+ + +++           
Sbjct: 22  NLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILIN----------- 70

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                             +C   K +R ++A  +F +MPH+N+++W++M+  YSQ G +E
Sbjct: 71  ------------------VCS--KSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSE 110

Query: 223 EAVNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           EA+ +F+++ R+ G  PN   L   I A   +  +  G   H   V+     DV+VG SL
Sbjct: 111 EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 170

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I FY+K G++E++ LVFD+L+E+  VTW  +I GY + GR   ++E F +MR   + P+ 
Sbjct: 171 IDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDR 230

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
             +  +L AC+    +E G    +   L     +       ++D  ++  R K  ++ L+
Sbjct: 231 YVVSSVLSACSMLEFLEGGKQIHAYV-LRRGTEMDVSVVNVLIDFYTKCNRVKAGRK-LF 288

Query: 402 DLPFDPGIGFWKALLGG 418
           D      I  W  ++ G
Sbjct: 289 DQMVVKNIISWTTMISG 305


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 164/453 (36%), Positives = 252/453 (55%), Gaps = 25/453 (5%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +      +FD   + + +S   ++  + +    EEA  +F+RM   ++     ++ +++ 
Sbjct: 174 RIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQRDV----VSWNTMVS 229

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                 D+   ++L      V    +VF  +A++  Y +   +EEA RVF+     N VS
Sbjct: 230 GHARRGDMAEARRLF----DVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVS 285

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +  M+   ++R   E+A +LF  MP RNV SWN M+ GY+Q G  +EA  +F       +
Sbjct: 286 WNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIF------DM 339

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
           +P       A+  AA +AA   G             L +F      + Y KCG+ME++  
Sbjct: 340 MPQKD----AVSWAAMLAAYSQGGFSEET-------LQLFKEMGRCAMYFKCGNMEEAHS 388

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F+++ ER+IV+WN +I GYA++G G+EA+E F+ MR    +P+ +TL+G+L AC+H+GL
Sbjct: 389 AFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGL 448

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VEKG SYF     +     KPEHY CM+DLL R+GR  EA   + D+PF+P    W ALL
Sbjct: 449 VEKGISYFYSMHRDFGVTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALL 508

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G  +IH N ELG  AA +I  L+PE+   YV+LSN  + +GKW +V  +R  M E+G+ +
Sbjct: 509 GASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRLMMHERGVKK 568

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           VPG SWIE+++KVH F  GD  H   ++IY  L
Sbjct: 569 VPGFSWIEVQNKVHTFSVGDSVHPEREDIYGFL 601



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 120/307 (39%), Gaps = 57/307 (18%)

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM------ 200
           +A+L  Y     +  A   F     P+  SY T++  L       DA  LF EM      
Sbjct: 70  NAMLGGYAANGRLTLALSFFRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSV 129

Query: 201 -------------------------PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                                    P ++ VSWN M+  Y + GR +EA +LF       
Sbjct: 130 SYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWD 189

Query: 236 LVPNHSTLP----CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            +  ++ +     C+ I  A        K F+      + + DV   N+++S +A+ G M
Sbjct: 190 AISWNALMAGYVQCSQIEEAQ-------KMFNR-----MPQRDVVSWNTMVSGHARRGDM 237

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            ++  +FD    R++ TW AV+ GYAQNG  EEA   F+ M       N V+   ++ A 
Sbjct: 238 AEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAM----PEKNAVSWNAMMAAY 293

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
               ++E+    F      +        +  M+   +++G   EA+     +P    +  
Sbjct: 294 VQRRMMEEAKELFDAMPCRNVA-----SWNTMLTGYAQAGMLDEARAIFDMMPQKDAVS- 347

Query: 412 WKALLGG 418
           W A+L  
Sbjct: 348 WAAMLAA 354



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 28/274 (10%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +  V+     I   ++  R  DA +LF  M  R+  ++NAM+GGY+  GR   A++ F  
Sbjct: 32  DAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRS 91

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKC 288
           + R          P +      + ALG+  S       F  +   D    N +IS +A  
Sbjct: 92  IPR----------PDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANH 141

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE-RMRINGIRPNGVTLLGL 347
           G +  +   FD   E++ V+WN ++  Y +NGR +EA + F+ R   + I  N   L+  
Sbjct: 142 GLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNA--LMAG 199

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
              C+     +K ++   Q  +          +  MV   +R G   EA+  L+D+    
Sbjct: 200 YVQCSQIEEAQKMFNRMPQRDVVS--------WNTMVSGHARRGDMAEARR-LFDVAPIR 250

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441
            +  W A++ G   +  +E     A+R+    PE
Sbjct: 251 DVFTWTAVVSGYAQNGMLE----EAKRVFDAMPE 280



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 134/320 (41%), Gaps = 21/320 (6%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           +++   + +A R+F      +  +Y  M+ G     R   AL  F+ +P  +  S+N ++
Sbjct: 45  HMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIPRPDSFSYNTLL 104

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
                +    +A  LF EM     V +  +    I + AN   + + + +   A +    
Sbjct: 105 HALGVSSSLADARALFDEMP----VKDSVSYNVMISSHANHGLVSLARHYFDLAPE---- 156

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            D    N +++ Y + G ++++  +FD  TE + ++WNA++ GY Q  + EEA + F RM
Sbjct: 157 KDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRM 216

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
               +    V+   ++      G + +    F  A + D        +  +V   +++G 
Sbjct: 217 PQRDV----VSWNTMVSGHARRGDMAEARRLFDVAPIRDVFT-----WTAVVSGYAQNGM 267

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
            +EAK     +P    +  W A++     +    + E A     A+   +V+S+  +   
Sbjct: 268 LEEAKRVFDAMPEKNAVS-WNAMMAA---YVQRRMMEEAKELFDAMPCRNVASWNTMLTG 323

Query: 453 LSVAGKWDNVSNIRREMKEK 472
            + AG  D    I   M +K
Sbjct: 324 YAQAGMLDEARAIFDMMPQK 343



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 21/218 (9%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  +++       +VFD +P+ N VS   ++  + ++   EEA  LF  M   N+ 
Sbjct: 256 TAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA 315

Query: 106 P-----SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL-------- 152
                 + +    ++  + A+ D+   K   +WA  +   S        L L        
Sbjct: 316 SWNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGRCA 375

Query: 153 -YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VS 207
            Y K  ++EEA   FE+    ++VS+ TMI G  +    ++AL++F  M   +     ++
Sbjct: 376 MYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDIT 435

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLV---PNHST 242
              ++   S +G  E+ ++ F  M R+  V   P H T
Sbjct: 436 LVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYT 473


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 163/468 (34%), Positives = 255/468 (54%), Gaps = 36/468 (7%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +RT  +S  ++         VF+ +   NVV+   +I  + +   Y+ A+  F  +L   
Sbjct: 444 VRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG 503

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           I+P   TF S++    + + L LGK + +   + G +S++ + +A++ +++         
Sbjct: 504 IKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVN-------- 555

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                             CG L       A+ LF +MP R++VSWN +I G+ Q G N+ 
Sbjct: 556 ------------------CGDLM-----SAMNLFNDMPERDLVSWNTIIAGFVQHGENQF 592

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A + F  M   G+ P+  T    + A A+  AL  G+  HA   +     DV VG  LIS
Sbjct: 593 AFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLIS 652

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCGS++D+ LVF  L ++N+ +W ++I GYAQ+GRG+EA+E F +M+  G++P+ +T
Sbjct: 653 MYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWIT 712

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKL--EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
            +G L AC H GL+++G  +F   K    +P M   EHY CMVDL  R+G   EA EF+ 
Sbjct: 713 FVGALSACAHAGLIKEGLHHFESMKDFNIEPRM---EHYGCMVDLFGRAGLLHEAVEFIN 769

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
            +   P    W ALLG CQ+H +VEL E  A++ L LDP D   YV+LSN  + AG W  
Sbjct: 770 KMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKE 829

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           V+ +R+ M ++G+ + PG SWIE+  +VH+F + D+ H   +EI+A L
Sbjct: 830 VTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAEL 877



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 168/302 (55%), Gaps = 31/302 (10%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +S  Q+FDE+PD +V S   ++G + +   YEEA  L  +M+   ++P ++TF  ++ + 
Sbjct: 156 NSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNAC 215

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
              ++++ G +L +     G  +++FVG+A+++++IK   +++A +VF +    +++++T
Sbjct: 216 ADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWT 275

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           +MI GL +  +F+ A  LFQ M                     EE          EG+ P
Sbjct: 276 SMITGLARHRQFKQACNLFQVM---------------------EE----------EGVQP 304

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +       + A  +  AL  GK  HA   +     +++VG +L+S Y KCGSMED+L VF
Sbjct: 305 DKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVF 364

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           + +  RN+V+W A+I G+AQ+GR EEA  FF +M  +GI PN VT + +L AC+    ++
Sbjct: 365 NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALK 424

Query: 359 KG 360
           +G
Sbjct: 425 QG 426



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 199/418 (47%), Gaps = 44/418 (10%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + +L  C  + +++K  +L SL  N   +T           A+    + CG   D     
Sbjct: 209 VYMLNACADAKNVDKGGELFSLILNAGWDTDL-----FVGTALINMHIKCGGVDDAL--- 260

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VF+ +P  ++++ T++I   A+   +++A  LF  M    ++P +  F S++ +    
Sbjct: 261 -KVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHP 319

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           E L  GK++HA   +VGL + ++VG+A+L +Y K  S+E                     
Sbjct: 320 EALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSME--------------------- 358

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                     DAL++F  +  RNVVSW AMI G++Q GR EEA   F +M+  G+ PN  
Sbjct: 359 ----------DALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRV 408

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A +  +AL  G+  H   +K     D  V  +L+S YAKCGS+ D+  VF+++
Sbjct: 409 TFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERI 468

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           +++N+V WNA+I  Y Q+ + + A+  F+ +   GI+P+  T   +L  C     +E G 
Sbjct: 469 SKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG- 527

Query: 362 SYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             + Q+ +   G     H    +V +    G    A     D+P +  +  W  ++ G
Sbjct: 528 -KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAG 583



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 174/357 (48%), Gaps = 37/357 (10%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N   A   + R +K     EA+ +   +   +I+    T+ S++      ++L  G+++H
Sbjct: 68  NTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIH 127

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
                  +Q ++F+ + ++ +Y K  +   A ++F+                        
Sbjct: 128 NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFD------------------------ 163

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
                  EMP ++V SWN ++GGY Q  R EEA  L  +M+++G+ P+  T    + A A
Sbjct: 164 -------EMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACA 216

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +   +  G    +  +      D+FVG +LI+ + KCG ++D+L VF+ L  R+++TW +
Sbjct: 217 DAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTS 276

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I G A++ + ++A   F+ M   G++P+ V  + LL ACNH   +E+G      A++++
Sbjct: 277 MITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRV--HARMKE 334

Query: 372 PGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            G L  E Y    ++ + ++ G  ++A E +++L     +  W A++ G   H  +E
Sbjct: 335 VG-LDTEIYVGTALLSMYTKCGSMEDALE-VFNLVKGRNVVSWTAMIAGFAQHGRME 389


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 261/469 (55%), Gaps = 39/469 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS      S   VF  +   NVVS  T+I  +A+    EEA   F +ML   + P+  +
Sbjct: 291 CGS----VRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVS 346

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
               + +   L DL  G+ +H    +  +  +V V ++++ +Y K   ++ A  VF    
Sbjct: 347 MMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVF---- 402

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                       G LK               H+ VV+WNAMI GY+Q G   EA+NLF E
Sbjct: 403 ------------GNLK---------------HKTVVTWNAMILGYAQNGCVNEALNLFCE 435

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M    + P+  TL   I A A+++     K  H  A++ L   +VFV  +LI  +AKCG+
Sbjct: 436 MQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGA 495

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++ +  +FD + ER+++TWNA+I GY  NG G EA++ F  M+   ++PN +T L ++ A
Sbjct: 496 IQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAA 555

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C+H+GLVE+G  YF   K E+ G L+P  +HY  MVDLL R+GR  +A +F+ D+P  PG
Sbjct: 556 CSHSGLVEEGMYYFESMK-ENYG-LEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPG 613

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           I    A+LG C+IH NVELGE  A  +  LDP+D   +V+L+N  + A  WD V+ +R  
Sbjct: 614 ITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTA 673

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M++KG+ + PGCS +E++++VH F +G  NH  +  IYA L +  ++++
Sbjct: 674 MEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMK 722



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 159/308 (51%), Gaps = 36/308 (11%)

Query: 57  KFSSVHQ---VFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           KF+S+ +   VF+ V   L+V+  T + G +AK     +A+  + RM    + P  + F 
Sbjct: 88  KFNSITEAARVFEPVEHKLDVLYHTMLKG-YAKNSTLRDAVRFYERMRCDEVMPVVYDFT 146

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            ++  S    DL  G+++H      G QSN+F  +A+++LY K   IE            
Sbjct: 147 YLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIE------------ 194

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                              DA K+F+ MP R++VSWN ++ GY+Q G    AV + ++M 
Sbjct: 195 -------------------DAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQ 235

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G  P+  TL   + A A++ AL +G+S H  A +   +  V V  +++  Y KCGS+ 
Sbjct: 236 EAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVR 295

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            + LVF  ++ RN+V+WN +I GYAQNG  EEA   F +M   G+ P  V+++G L AC 
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACA 355

Query: 353 HTGLVEKG 360
           + G +E+G
Sbjct: 356 NLGDLERG 363



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 34/238 (14%)

Query: 116 PSSTALEDLNLGKQLH---AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           PS+  LE     K+LH       K G  +     + ++ L+ K +SI EA RVFE     
Sbjct: 46  PSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFE----- 100

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                      + H+  V ++ M+ GY++     +AV  +  M 
Sbjct: 101 --------------------------PVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMR 134

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            + ++P        +  +     L  G+  H   +    + ++F   ++++ YAKC  +E
Sbjct: 135 CDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIE 194

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           D+  +F+++ +R++V+WN V+ GYAQNG    A++   +M+  G +P+ +TL+ +L A
Sbjct: 195 DAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPA 252



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 13/199 (6%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+  +      VF  +    VV+   +I  +A+     EA+ LF  M   +I+P  
Sbjct: 386 ISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDS 445

Query: 109 FTFGSVIPSSTALEDLNLGKQ---LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           FT  SVI   TAL DL++ +Q   +H  A +  +  NVFV +A++D + K  +I+ A ++
Sbjct: 446 FTLVSVI---TALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKL 502

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRN 221
           F+     +V+++  MI G        +AL LF EM + +V    +++ ++I   S +G  
Sbjct: 503 FDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLV 562

Query: 222 EEAVNLFIEMLRE--GLVP 238
           EE +  F E ++E  GL P
Sbjct: 563 EEGMYYF-ESMKENYGLEP 580


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 158/466 (33%), Positives = 260/466 (55%), Gaps = 32/466 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S    + S +++F  +   NVVS T +I  + +  H+++   LF  M L  IRP  F   
Sbjct: 131 SNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAIT 190

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S + +    E L  GK +H +A + G++  + V +A++++Y+K                 
Sbjct: 191 SALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVK----------------- 233

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG ++  RF     +F  +  ++ +SWN +IGGYS++    EA  LF EML
Sbjct: 234 ---------CGYMEEARF-----IFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEML 279

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            + L PN  T+ C + AAA++++L  G+  HA AV+     D FV N+L+  Y KCG++ 
Sbjct: 280 LQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALL 338

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  +FD LT +N+++W  +I GY  +GRG +AI  FE+M+ +GI+P+  +   +L+AC+
Sbjct: 339 LARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACS 398

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+GL ++G+ +F+  + E     K +HYACMVDLL  +G  KEA EF+  +P +P    W
Sbjct: 399 HSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIW 458

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LL GC+IH NV+L E  A  +  L+PE+   YV+L+N  + A +W+ V  ++ ++  +
Sbjct: 459 VSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGR 518

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G+    GCSWIE++ K H+F   +RNH     I   L     +++E
Sbjct: 519 GLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQE 564



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 130/273 (47%), Gaps = 5/273 (1%)

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K  R EDAL +F EMP R+++SWN++IGG +  G  ++AV LF+ M  EG   + +TL  
Sbjct: 31  KSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLS 90

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + A        +G   H  +V+     +  +GN+L+  Y+ C     +  +F  + ++N
Sbjct: 91  VMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKN 150

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           +V+W A+I  Y + G  ++    F+ M + GIRP+   +   L A      ++ G S   
Sbjct: 151 VVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHG 210

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
            A       + P   A M ++  + G  +EA+ F++D         W  L+GG    SN+
Sbjct: 211 YAIRNGIEEVLPVANALM-EMYVKCGYMEEAR-FIFDHVTKKDTISWNTLIGGYS-RSNL 267

Query: 426 ELGEFA--ARRILALDPEDVSSYVMLSNALSVA 456
               F      +L L P  V+   +L  A S++
Sbjct: 268 ANEAFTLFNEMLLQLRPNAVTMACILPAAASLS 300



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 5/109 (4%)

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G   H   VK+       V N+LISFYAK   +ED+L+VFD++ +R+I++WN++I G A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT-----GLVEKGYS 362
           NG  ++A+E F RM + G   +  TLL ++ AC  +     G V  GYS
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYS 111


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 162/466 (34%), Positives = 265/466 (56%), Gaps = 31/466 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ +       VF  +P+ ++++   +I   ++    EEA  LF  M    I  ++ T  
Sbjct: 258 SKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLS 317

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ S  AL+   + +Q+HA + K G + + +V ++++D Y K   +E+ATRV       
Sbjct: 318 TVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRV------- 370

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                   F+E P  ++V + +++  Y+Q G+ EEA+ L++EM 
Sbjct: 371 ------------------------FEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQ 406

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G+ P+       + A A+++A   GK  H   +KF    D+F GNSL++ YAKCGS+E
Sbjct: 407 DRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIE 466

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+   F ++  R IV+W+A+I G AQ+G G+EA++ F++M   G+ PN +TL+ +L ACN
Sbjct: 467 DASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACN 526

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H GLV +   YF+  K+        EHYACM+DLL R+G+ + A E +  +PF      W
Sbjct: 527 HAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVW 586

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALLG  +IH N++LGE AA  +LAL+PE   ++V+L+N  +  G WD V+ +RR MK+ 
Sbjct: 587 GALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDG 646

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            + + PG SW+E+K KV+ F+ GDR+H  + EIYA L   ++ +++
Sbjct: 647 KVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKK 692



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 149/291 (51%), Gaps = 31/291 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F     +FD +PD +VVS   +   +     + EA+ LF  M+L  IRP+EF+  S+I  
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T LED   G+++H +  K+G  S+ F  +A++D+Y K+  +E+A+ VF+          
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFD---------- 170

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                                E+   ++VSWNA+I G      +  A+ L  EM + G+ 
Sbjct: 171 ---------------------EIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMC 209

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  TL  A+ A A +A   +G+  H+  +K     D F+G  LI  Y+KC SM+D+ LV
Sbjct: 210 PNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLV 269

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           F  + ER+++ WNAVI G++QN   EEA   F  M   GI  N  TL  +L
Sbjct: 270 FKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVL 320



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 154/336 (45%), Gaps = 40/336 (11%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M LL I+ +EF F SV+ + T  +DL LGKQ+H      G  S+ FV ++++ LY K   
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAK--- 57

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
                                  CG      F DA  LF  +P R+VVSWNA+   Y  +
Sbjct: 58  -----------------------CG-----GFGDARSLFDAIPDRSVVSWNALFSCYVHS 89

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
             + EAV+LF +M+  G+ PN  +L   I     +     G+  H   +K     D F  
Sbjct: 90  DMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSA 149

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N+L+  YAK G +ED+  VFD++ + +IV+WNA+I G   +     A+E    M  +G+ 
Sbjct: 150 NALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMC 209

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEA 396
           PN  TL   L AC    L E G    S     D G    + +    ++D+ S+     +A
Sbjct: 210 PNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG---SDSFLGVGLIDMYSKCNSMDDA 266

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
           +     +P    I  W A++ G   HS  E  E AA
Sbjct: 267 RLVFKLMPERDMIA-WNAVISG---HSQNEEDEEAA 298


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 266/470 (56%), Gaps = 14/470 (2%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++   VF+EV     V    +I  + +     +A  LF RM+   +   EFTF SV+ + 
Sbjct: 249 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 308

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVF------VGSAILDLYIKLSSIEEATRVFEDTHNP 172
                   GK +H    +  LQ N        V +A++ LY K   I  A R+F+  +  
Sbjct: 309 ANAGFFVHGKSVHGQIIR--LQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK 366

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +VVS+ T++ G +     + A+++F+ MP++N +SW  M+ GY   G +E+A+ LF +M 
Sbjct: 367 DVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMR 426

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            E + P   T   AI A   + AL  G+  HA  V+   +     GN+L++ YAKCG++ 
Sbjct: 427 AEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVN 486

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+ LVF  +   + V+WNA+I    Q+G G EA+E F++M   GI P+ ++ L +L ACN
Sbjct: 487 DARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACN 546

Query: 353 HTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H GLV++G+ YF   K +    PG    +HYA ++DLL RSGR  EA++ +  +PF+P  
Sbjct: 547 HAGLVDEGFHYFESMKRDFGISPG---EDHYARLIDLLGRSGRIGEARDLIKTMPFEPTP 603

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W+A+L GC+ + ++E G +AA ++  + P+   +Y++LSN  S AG+W + + +R+ M
Sbjct: 604 SIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLM 663

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +++G+ + PGCSWIE+ SK+HVF+ GD  H    E+Y  L     ++R+ 
Sbjct: 664 RDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKL 713



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 176/352 (50%), Gaps = 19/352 (5%)

Query: 41  TPAIRTDSVSCGSESDKFSSVHQVFDEVPDL--NVVSATTIIGRFAKQHHYEEAIYLFSR 98
            P+  T  V+  + + +       FD VP    + V    ++  FA+      A+ +F  
Sbjct: 91  APSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHA 150

Query: 99  MLLL-NIRPSEFTFGSVIPSSTALEDLNLG--KQLHAWATKVGLQSNVFVGSAILDLYIK 155
           +L   ++RP +++F ++I +   + +L      QLH    K G  + + V +A++ LY+K
Sbjct: 151 LLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMK 210

Query: 156 LSSIE---EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
             + E   +A +V ++  + + +++TTM+ G ++R     A  +F+E+  +  V WNAMI
Sbjct: 211 CDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMI 270

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK---- 268
            GY Q+G   +A  LF  M+ E +  +  T    + A AN      GKS H   ++    
Sbjct: 271 SGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPN 330

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
           F+ +  + V N+L++ Y+K G +  +  +FD +  +++V+WN ++ GY  +G  ++A+E 
Sbjct: 331 FVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEV 390

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
           F+ M       N ++ + ++    H GL E     F+Q + ED   +KP  Y
Sbjct: 391 FKVMPYK----NDLSWMVMVSGYVHGGLSEDALKLFNQMRAED---VKPCDY 435


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 261/466 (56%), Gaps = 38/466 (8%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D  SS   +FD +P  N+     +I  +A    YE A+ L+ +M    + P  FTF  V+
Sbjct: 124 DSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVL 183

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            +  AL  +  G+++H    + G + +VFVG+A++D+Y K                    
Sbjct: 184 KACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAK-------------------- 223

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                 CG +   R     ++F ++  R+ V WN+M+  YSQ G  +  ++L  EM+  G
Sbjct: 224 ------CGCVGSAR-----EVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTG 272

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L P  +TL  AI A+A+ AAL  G+  H  + +   +    V  +L+  YAKCGS+  + 
Sbjct: 273 LRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVAR 332

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +F++L  + +V+WNA+I GYA +G   EA++ FE M     +P+ +T +G+L AC+H G
Sbjct: 333 NLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMN-RVAKPDHITFVGVLSACSHGG 391

Query: 356 LVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           L+E+G+ +F     +   DP +   +HY CMVDLL  SGR  EA   +  +   P  G W
Sbjct: 392 LLEEGWMFFETMIRDYKIDPTV---QHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVW 448

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALL  C+IH+NVELGE A  R++ L+P+D  +YV+LSN  + AGKW+ V+ +R+ M ++
Sbjct: 449 GALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDR 508

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            + +   CSWIE+K+KVH F++GD +H ++DEIY+ L      ++E
Sbjct: 509 RLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKE 554



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 146/324 (45%), Gaps = 39/324 (12%)

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           + P+   + S++ S  A + +  GKQLHA     G   +  + + +++LY          
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYC--------- 121

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                            +C  L   R      LF  +P  N+  WN +I GY+  G  E 
Sbjct: 122 -----------------VCDSLSSARL-----LFDRIPKHNIFLWNVLIRGYAWNGPYEA 159

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           AV L+ +M   GLVP++ T P  + A A ++A+  G+  H   V+   + DVFVG +LI 
Sbjct: 160 AVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALID 219

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCG +  +  VFDK+  R+ V WN+++  Y+QNG  +  +     M + G+RP   T
Sbjct: 220 MYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEAT 279

Query: 344 LLGLLWACNHTGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
           L+  + A      + +G        + + E    +K      +VD+ ++ G  + A+   
Sbjct: 280 LVTAISASADNAALPQGRELHGLSWRQEFESHDKVK----TALVDMYAKCGSVRVARNLF 335

Query: 401 YDLPFDPGIGFWKALLGGCQIHSN 424
             L     +  W A++ G  +H +
Sbjct: 336 ERLGVKRVVS-WNAMITGYAMHGH 358


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 160/458 (34%), Positives = 268/458 (58%), Gaps = 32/458 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYE-EAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VF+++P+ NV+S T II  +A+    + EAI LF +M+  +IRP+ F+F SV+ +   L
Sbjct: 115 KVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 174

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D   G+Q++++A K+G+ S   VG++++ +Y +                          
Sbjct: 175 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG------------------------ 210

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                  R EDA K F  +  +N+VS+NA++ GY++  ++EEA  LF E+   G+  +  
Sbjct: 211 -------RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 263

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    +  AA+I A+G G+  H   +K   K +  + N+LIS Y++CG++E +  VF+++
Sbjct: 264 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM 323

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +RN+++W ++I G+A++G    A+E F +M   G +PN +T + +L AC+H G++ +G 
Sbjct: 324 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQ 383

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            +F+    E   + + EHYACMVDLL RSG   EA EF+  +P       W+ LLG C++
Sbjct: 384 KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV 443

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ELG  AA  IL  +P+D ++Y++LSN  + AG+W +V  IR+ MKE+ + +  GCS
Sbjct: 444 HGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCS 503

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           WIE++++VH F  G+ +H    +IY  L     +I+E 
Sbjct: 504 WIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEM 541



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 190/369 (51%), Gaps = 37/369 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           ++  ++VFD++P+ N+V+ T +I RFA+     +AI LF  M L    P  FT+ SV+ +
Sbjct: 6   WAPAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 65

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T L  L LGKQLH+   ++GL  +V VG +++D+Y K ++                   
Sbjct: 66  CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAA------------------- 106

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR-NEEAVNLFIEMLREGL 236
                        +D+ K+F++MP  NV+SW A+I  Y+Q+G  ++EA+ LF +M+   +
Sbjct: 107 ---------DGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHI 157

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV-FVGNSLISFYAKCGSMEDSL 295
            PNH +    + A  N++    G+  ++ AVK LG   V  VGNSLIS YA+ G MED+ 
Sbjct: 158 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK-LGIASVNCVGNSLISMYARSGRMEDAR 216

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
             FD L E+N+V++NA++ GYA+N + EEA   F  +   GI  +  T   LL      G
Sbjct: 217 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 276

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            + KG     +      G  K     C  ++ + SR G  + A +   ++  D  +  W 
Sbjct: 277 AMGKGEQIHGRLL---KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWT 332

Query: 414 ALLGGCQIH 422
           +++ G   H
Sbjct: 333 SMITGFAKH 341



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  + S +     + FD + + N+VS   I+  +AK    EEA  LF+ +    I  S 
Sbjct: 203 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 262

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF S++  + ++  +  G+Q+H    K G +SN  + +A++ +Y +  +IE A +VF +
Sbjct: 263 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 322

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEA 224
             + NV+S+T+MI G  K      AL++F +M       N +++ A++   S  G   E 
Sbjct: 323 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 382

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
              F  M +E G+VP      C +
Sbjct: 383 QKHFNSMYKEHGIVPRMEHYACMV 406


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 174/538 (32%), Positives = 280/538 (52%), Gaps = 31/538 (5%)

Query: 11  SLSLNKLSKLHSLAPNYLIETQKA--SVQKLETPAIRTD------------SVSCGSESD 56
           S++ ++ S +    P  L ET K+   ++++ +  I+T             S  C  E  
Sbjct: 3   SMACSQSSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFG 62

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
                 Q+FD +P+ +V S   +   +++    +  + L+  ML  N++P  +T+  +  
Sbjct: 63  DMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFK 122

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE--------- 167
             T    L LG++LH    K GL SNVF  +A++++Y     I+ A  +F+         
Sbjct: 123 GFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVT 182

Query: 168 --------DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
                   +    +V+S+T ++ G +   + + A K F +MP R+ VSW AMI GY +  
Sbjct: 183 WNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLN 242

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
             +EA+ LF EM    + P+  T+   + A A + AL +G+       K   K D FVGN
Sbjct: 243 CYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGN 302

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           +LI  Y KCG++E +L +F+ L +R+  TW A++ G A NG GEEA+  F +M    + P
Sbjct: 303 ALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTP 362

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           + VT +G+L AC HTG+V++G  +F+             HY CMVDLL ++G  KEA E 
Sbjct: 363 DEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEI 422

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + ++P  P    W ALLG C+IH + E+ E A  +IL L+P + + YV+  N  +   KW
Sbjct: 423 IKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKW 482

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           D +  +R+ M ++G+ + PGCS IE+   VH FV GD++H    EIY  L   T  ++
Sbjct: 483 DKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLK 540


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 275/468 (58%), Gaps = 4/468 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +SCG    + S  + VF++    ++V+  ++I    K+    EAI ++  M    +RP+E
Sbjct: 204 LSCG----ELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNE 259

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T   +I S + ++DLNLGK+ H +  + GL+  + + +A++D+Y+K   +  A  +F++
Sbjct: 260 ITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDN 319

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                +VS+TTM+ G  +    + A ++  ++P ++VV WNA+I G  Q  + +EA+ LF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM    + P+  T+   + A + + AL +G   H    +    +DV +G +L+  YAKC
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G++  +L VF+++ +RN +TW AVICG A +G  ++A+ +F +M   GI P+ +T LG+L
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC H GLVE+G  YFS+   +     K +HY+CMVDLL R+G  +EA+E + ++P    
Sbjct: 500 SACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAAD 559

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
                AL   C+++ NV++GE  A ++L +DP+D  +YV+L++  S A  W    + R+ 
Sbjct: 560 AAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKL 619

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           M +KG+ + PGCS +EI   VH FV  D +H  ++ IY  L + T+Q+
Sbjct: 620 MNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIYECLVTLTKQL 667



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/482 (23%), Positives = 203/482 (42%), Gaps = 77/482 (15%)

Query: 9   RSSLSLNKLSKLHSLAPNYLIETQKASVQKLET--PAIRTDSVSCGSESDKFSSVHQVFD 66
           R +  L+ L +  SL     I+ Q  S   +E    A R  +    SES +     ++  
Sbjct: 56  RENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILY 115

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTALEDLN 125
            + +LNV S    I  + +    E    L+ RMLL   ++P   T+  ++          
Sbjct: 116 RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSC 175

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           LG  +     K G + ++FV +A + + +    +  A  VF  +                
Sbjct: 176 LGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRV-------------- 221

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                            R++V+WN+MI G  + G   EA+ ++ EM  E + PN  T+  
Sbjct: 222 -----------------RDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIG 264

Query: 246 AIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFD----- 299
            I + + +  L +GK FH C +K  G +  + + N+L+  Y KCG +  + ++FD     
Sbjct: 265 MISSCSQVQDLNLGKEFH-CYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQK 323

Query: 300 --------------------------KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
                                     K+ E+++V WNA+I G  Q  +G+EA+  F  M+
Sbjct: 324 TLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ 383

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
           I  I P+ VT++  L AC+  G ++ G   + Y  + KL     L       +VD+ ++ 
Sbjct: 384 IRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALG----TALVDMYAKC 439

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVM 448
           G    A +   ++P    +  W A++ G  +H N +  L  F+    + + P++++   +
Sbjct: 440 GNIARALQVFEEIPQRNCLT-WTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGV 498

Query: 449 LS 450
           LS
Sbjct: 499 LS 500



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 39/314 (12%)

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNH 240
           C L + +  +   ++   +   NV SWNA I GY ++G  E    L+  ML  G L P++
Sbjct: 99  CALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDN 158

Query: 241 STLPCAIIAAAN--IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
            T P  +        + LG+G   H   +KF  + D+FV N+ I+    CG +  +  VF
Sbjct: 159 HTYPLLLKGCCGQYSSCLGLGVLGHV--LKFGFECDIFVHNASITMLLSCGELSVAYDVF 216

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT---G 355
           +K   R++VTWN++I G  + G   EAI+ ++ M    +RPN +T++G++ +C+      
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLN 276

Query: 356 LVEKGYSYFSQAKLED----PGMLKPEHYAC-----------------------MVDLLS 388
           L ++ + Y  +  LE        L   +  C                       MV   +
Sbjct: 277 LGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYA 336

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGC-QIHSNVE-LGEFAARRILALDPEDVSSY 446
           R G    A+E LY +P +  +  W A++ GC Q     E L  F   +I  ++P+ V+  
Sbjct: 337 RFGFLDVAREILYKIP-EKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMV 395

Query: 447 VMLSNALSVAGKWD 460
             LS A S  G  D
Sbjct: 396 NCLS-ACSQLGALD 408



 Score = 45.1 bits (105), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 26  NYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           ++ IE  K S+      A+      CG+     +   QVF+E+P  N ++ T +I   A 
Sbjct: 414 HHYIERHKLSIDVALGTALVDMYAKCGN----IARALQVFEEIPQRNCLTWTAVICGLAL 469

Query: 86  QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA-WATKVGLQSNVF 144
             + ++A+  FS+M+ + I P E TF  V+ +      +  G++  +  ++K  +   + 
Sbjct: 470 HGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLK 529

Query: 145 VGSAILDLYIKLSSIEEATRVFED 168
             S ++DL  +   +EEA  + ++
Sbjct: 530 HYSCMVDLLGRAGHLEEAEELVKN 553


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 256/446 (57%), Gaps = 8/446 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E ++     Q F  +P  N  S   +I    +    EEA  LF  M   N+     ++ +
Sbjct: 121 EDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNV----ISYTA 176

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++     + ++   + L         Q NV   + ++  Y++    +EA  +FE   + N
Sbjct: 177 MVDGYAKIGEIEQARALFNCMP----QKNVVSWTVMISGYVENGKFDEAENLFEQMPDKN 232

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           +V+ T MI G  K  + + A  LF ++P R++ SWNAMI GY+Q G  EEA+ L  +ML+
Sbjct: 233 IVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLK 292

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+ P+HSTL   + A +++A+L  G+  H   +K   +  + + N+LI+ Y KCGS+ D
Sbjct: 293 MGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILD 352

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           S L F ++   ++V+WNA+I  +A++G  + A+  F  MR N + P+G+T L LL AC H
Sbjct: 353 SELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGH 412

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            G V +  ++F+        + +PEH+AC+VD+LSR G+ ++A + + ++PF+   G W 
Sbjct: 413 AGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWG 472

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALL  C +H NV+LGE AA++I+ L+P++  +YV+LSN  + AG W  V+ +R  M+E+G
Sbjct: 473 ALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQG 532

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNH 499
           + + P  SW+EI +KVH F+  D +H
Sbjct: 533 VKKQPAYSWMEIDNKVHFFLGDDASH 558



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 149/302 (49%), Gaps = 49/302 (16%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +  QVFDE+P  + VS  +II  + K   ++E+  LF  M   N+               
Sbjct: 65  AARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVV-------------- 110

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
                       +W        N  +   I D       I+EA + F+     N  S+  
Sbjct: 111 ------------SW--------NSMIAGCIED-----ERIDEAWQYFQAMPQRNTASWNA 145

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           MI GL++ +R E+A +LF+EMP RNV+S+ AM+ GY++ G  E+A  LF        +P 
Sbjct: 146 MISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALF------NCMPQ 199

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAV-KFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
            + +   ++ +  +     GK   A  + + +   ++    ++I+ Y K G  + + ++F
Sbjct: 200 KNVVSWTVMISGYVEN---GKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILF 256

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D++  R++ +WNA+I GYAQNG GEEA++   +M   G++P+  TL+ +L AC+    ++
Sbjct: 257 DQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQ 316

Query: 359 KG 360
           +G
Sbjct: 317 EG 318


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 260/455 (57%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F ++ + N+     +I   +   + ++A + + +     + P   TF  ++ S T L 
Sbjct: 74  RIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLH 133

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +++G Q H    K G + +V+V ++++ +Y      E AT +F+  +  +VVS+T+MI 
Sbjct: 134 CISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIR 193

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G  K    E A KLF +MP +N+V+W+ MI GY+Q    ++AV LF  +  +G+  N + 
Sbjct: 194 GFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETV 253

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   I + A++ AL +G+  H   VK    L++ +G +L+  YA+CGS++ ++ VF+ L 
Sbjct: 254 MVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLP 313

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER+ ++W A+I G A +G  E ++++F  M   G+ P  +T   +L AC+H GLVE+G+ 
Sbjct: 314 ERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQ 373

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            F   K +     + EHY CMVDLL R+G+ +EA+ F+  +P  P    W ALLG C+IH
Sbjct: 374 IFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIH 433

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N E+GE   + ++ L P+    YV+LSN  + A +W+ V+ +R+ MK KG+ + PG S 
Sbjct: 434 KNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSL 493

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           IE+  +VH F  GD +H   D+I  +      +IR
Sbjct: 494 IELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIR 528



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 76/368 (20%)

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS----IEEATRVFEDTHNPNVVSYT 178
           DL   K +HA+  +  +  +VF  S ++   +  SS    I+ A+R+F    NPN+  + 
Sbjct: 29  DLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIF- 87

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                                         NAMI G+S +   ++A + +++  R+GL+P
Sbjct: 88  ------------------------------NAMIRGHSGSKNPDQAFHFYVQSQRQGLLP 117

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA------------ 286
           ++ T P  + +   +  + MG   H   +K   + DV+V NSL+  YA            
Sbjct: 118 DNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIF 177

Query: 287 -------------------KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
                              KCG +E +  +FD++ E+N+VTW+ +I GYAQN   ++A+E
Sbjct: 178 QRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVE 237

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYSYFSQAKLEDPGMLKPEHYACMV 384
            F+ ++  G+R N   ++ ++ +C H G   L E+ + Y  +  +    +L       +V
Sbjct: 238 LFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILG----TALV 293

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPED 442
           D+ +R G   +A     DLP    +  W AL+ G  +H   E  L  FA      L P D
Sbjct: 294 DMYARCGSIDKAVWVFEDLPERDTLS-WTALIAGLAMHGYSERSLKYFATMVEAGLTPRD 352

Query: 443 VSSYVMLS 450
           ++   +LS
Sbjct: 353 ITFTAVLS 360



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 101/182 (55%), Gaps = 4/182 (2%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  ++FD++P+ N+V+ +T+I  +A+ +H+++A+ LF  +    +R +E    SVI S  
Sbjct: 203 SARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCA 262

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            L  L LG++ H +  K G+  N+ +G+A++D+Y +  SI++A  VFED    + +S+T 
Sbjct: 263 HLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTA 322

Query: 180 MICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           +I GL      E +LK F  M    +    +++ A++   S  G  E    +F  M R+ 
Sbjct: 323 LIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDH 382

Query: 236 LV 237
            V
Sbjct: 383 RV 384


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 163/449 (36%), Positives = 250/449 (55%), Gaps = 36/449 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++ S T++I  +A+    +EA+ L   ML    +P+ FTF S++ ++ A     +G+Q+H
Sbjct: 5   DMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 64

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K     +V+VGSA+LD+Y +                          CG     R +
Sbjct: 65  ALTVKYDWHDDVYVGSALLDMYAR--------------------------CG-----RMD 93

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
            A+ +F ++  +N VSWNA+I G+++ G  E  + +F EM R G    H T      A A
Sbjct: 94  MAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIA 153

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            I AL  GK  HA  +K   +L  FVGN+++  YAK GSM D+  VFD + ++++VTWN+
Sbjct: 154 GIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNS 213

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           ++  +AQ G G EA+  FE MR  G+  N +T L +L AC+H GLV++G  YF   K  +
Sbjct: 214 MLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHN 273

Query: 372 PGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
              L+PE  HY  +VDLL R+G   +A  F++ +P  P    W ALLG C++H N ++G+
Sbjct: 274 ---LEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQ 330

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
           FAA  +  LDP+D    V+L N  +  G+WD  + +R+ MK  G+ + P CSW+EI++ V
Sbjct: 331 FAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSV 390

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           H+FV  D  H  ++EIY      + QIR+
Sbjct: 391 HMFVANDDTHPRSEEIYKKWEEISIQIRK 419



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 116/217 (53%), Gaps = 2/217 (0%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  R++ SW ++I GY+Q    +EA+ L + MLR    PN  T    + AA   A+ G+G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           +  HA  VK+    DV+VG++L+  YA+CG M+ ++ VFD+L  +N V+WNA+I G+A+ 
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
           G GE  +  F  M+ NG      T   +  A    G +E+G  +     ++    L    
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQG-KWVHAHMIKSGERLSAFV 179

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
              ++D+ ++SG   +A++ ++D      +  W ++L
Sbjct: 180 GNTILDMYAKSGSMIDARK-VFDHVDKKDLVTWNSML 215



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 4/179 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD++   N VS   +I  FA++   E  + +F+ M       + FT+ SV  +   +  
Sbjct: 98  VFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGA 157

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK +HA   K G + + FVG+ ILD+Y K  S+ +A +VF+     ++V++ +M+  
Sbjct: 158 LEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTA 217

Query: 184 LLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
             +     +A+  F+EM     H N +++ +++   S  G  +E    F  M    L P
Sbjct: 218 FAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEP 276


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 266/470 (56%), Gaps = 14/470 (2%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++   VF+EV     V    +I  + +     +A  LF RM+   +   EFTF SV+ + 
Sbjct: 251 NAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSAC 310

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVF------VGSAILDLYIKLSSIEEATRVFEDTHNP 172
                   GK +H    +  LQ N        V +A++ LY K   I  A R+F+  +  
Sbjct: 311 ANAGFFVHGKSVHGQIIR--LQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK 368

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +VVS+ T++ G +     + A+++F+ MP++N +SW  M+ GY   G +E+A+ LF +M 
Sbjct: 369 DVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMR 428

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            E + P   T   AI A   + AL  G+  HA  V+   +     GN+L++ YAKCG++ 
Sbjct: 429 AEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVN 488

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+ LVF  +   + V+WNA+I    Q+G G EA+E F++M   GI P+ ++ L +L ACN
Sbjct: 489 DARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACN 548

Query: 353 HTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H GLV++G+ YF   K +    PG    +HYA ++DLL RSGR  EA++ +  +PF+P  
Sbjct: 549 HAGLVDEGFHYFESMKRDFGISPG---EDHYARLIDLLGRSGRIGEARDLIKTMPFEPTP 605

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W+A+L GC+ + ++E G +AA ++  + P+   +Y++LSN  S AG+W + + +R+ M
Sbjct: 606 SIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLM 665

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +++G+ + PGCSWIE+ SK+HVF+ GD  H    E+Y  L     ++R+ 
Sbjct: 666 RDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKL 715



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 184/377 (48%), Gaps = 19/377 (5%)

Query: 16  KLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL--NV 73
           +L  L++L+P+               P   T  V+  + + +       FD VP    + 
Sbjct: 68  RLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDT 127

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTALEDLNLG--KQL 130
           V    ++  FA+      A+ +F  +L   ++RP +++F ++I +   + +L      QL
Sbjct: 128 VLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQL 187

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIE---EATRVFEDTHNPNVVSYTTMICGLLKR 187
           H    K G  + + V +A++ LY+K  + E   +A +V ++  + + +++TTM+ G ++R
Sbjct: 188 HCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRR 247

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                A  +F+E+  +  V WNAMI GY Q+G   +A  LF  M+ E +  +  T    +
Sbjct: 248 GDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVL 307

Query: 248 IAAANIAALGMGKSFHACAVK----FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
            A AN      GKS H   ++    F+ +  + V N+L++ Y+K G +  +  +FD +  
Sbjct: 308 SACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 367

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++V+WN ++ GY  +G  ++A+E F+ M       N ++ + ++    H GL E     
Sbjct: 368 KDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMVMVSGYVHGGLSEDALKL 423

Query: 364 FSQAKLEDPGMLKPEHY 380
           F+Q + ED   +KP  Y
Sbjct: 424 FNQMRAED---VKPCDY 437


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 175/480 (36%), Positives = 265/480 (55%), Gaps = 45/480 (9%)

Query: 52  GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           G   D      Q+ +E   ++VV+ +  I  +A++    EA+ +  +ML   I+P+E T 
Sbjct: 309 GRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKV-------GLQSNVFVGSAILDLYIKLSSIEEATR 164
            SV+    ++  L  GK++H +A K        G      V + ++D+Y K   ++ A  
Sbjct: 369 ISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARA 428

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           +F D+ +P                              R+VV+W  MIGGYSQ G   +A
Sbjct: 429 MF-DSLSPK----------------------------ERDVVTWTVMIGGYSQHGDANKA 459

Query: 225 VNLFIEMLREGLV--PNHSTLPCAIIAAANIAALGMGKSFHACAVKFL-GKLDVFVGNSL 281
           + L  EM  E     PN  T+ CA++A A++AAL +GK  HA A++     + +FV N L
Sbjct: 460 LELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCL 519

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I  YAKCG + D+ LVFD + E+N VTW +++ GY  +G GEEA+  FE MR  G + +G
Sbjct: 520 IDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDG 579

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           VTLL +L+AC+H+G++++G  YF++ K +    PG   PEHYAC+VDLL R+GR   A  
Sbjct: 580 VTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPG---PEHYACLVDLLGRAGRLNAALR 636

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
            + ++P +P    W ALL  C+IH  VELGE+AA++I  L   +  SY +LSN  + AG+
Sbjct: 637 LIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGR 696

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W +V+ IR  M+ KG+ + PGCSW+E       F  GD+ H    EIY VL    ++I++
Sbjct: 697 WKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKD 756



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 213/417 (51%), Gaps = 23/417 (5%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEF 109
           CGS SD      +VFDE+P  +VVS  +II  +AK    + A+ +FS+M      RP + 
Sbjct: 175 CGSLSD----ARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDI 230

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T  +V+P   ++   +LGKQ H +A    +  N+FVG+ ++D+Y K   ++EA  VF + 
Sbjct: 231 TLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNM 290

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAV 225
              +VVS+  M+ G  +  RFEDA++LF++M       +VV+W+A I GY+Q G   EA+
Sbjct: 291 PVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEAL 350

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-------DVFVG 278
            +  +ML  G+ PN  TL   +   A++ AL  GK  H  A+K+   L       +  V 
Sbjct: 351 GVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVI 410

Query: 279 NSLISFYAKCGSMEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERM--RI 334
           N LI  YAKC  ++ +  +FD L+  ER++VTW  +I GY+Q+G   +A+E    M    
Sbjct: 411 NQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEED 470

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
              RPN  T+   L AC     +  G    + A       +      C++D+ ++ G   
Sbjct: 471 CQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIG 530

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVML 449
           +A+  ++D   +     W +L+ G  +H   E  LG F   R +    + V+  V+L
Sbjct: 531 DAR-LVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVL 586



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 144/295 (48%), Gaps = 37/295 (12%)

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           D  V    ++I  +       + +  F  M  L+  P  +TF  V  +   +  +  G  
Sbjct: 89  DAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDS 148

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
            HA +   G  SNVFVG+A++ +Y +                          CG L    
Sbjct: 149 SHALSRVTGFMSNVFVGNALVAMYSR--------------------------CGSL---- 178

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAII 248
             DA K+F EMP  +VVSWN++I  Y++ G+ + A+ +F +M  E G  P+  TL   + 
Sbjct: 179 -SDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLP 237

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
             A++    +GK FH  AV      ++FVGN L+  YAK G M+++  VF  +  +++V+
Sbjct: 238 PCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVS 297

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           WNA++ GY+Q GR E+A+  FE+M+   I+ + VT     W+   +G  ++G  Y
Sbjct: 298 WNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVT-----WSAAISGYAQRGLGY 347


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 160/458 (34%), Positives = 268/458 (58%), Gaps = 32/458 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYE-EAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VF+++P+ NV+S T II  +A+    + EAI LF +M+  +IRP+ F+F SV+ +   L
Sbjct: 110 KVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 169

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D   G+Q++++A K+G+ S   VG++++ +Y +                          
Sbjct: 170 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSG------------------------ 205

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                  R EDA K F  +  +N+VS+NA++ GY++  ++EEA  LF E+   G+  +  
Sbjct: 206 -------RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 258

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    +  AA+I A+G G+  H   +K   K +  + N+LIS Y++CG++E +  VF+++
Sbjct: 259 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM 318

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +RN+++W ++I G+A++G    A+E F +M   G +PN +T + +L AC+H G++ +G 
Sbjct: 319 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQ 378

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            +F+    E   + + EHYACMVDLL RSG   EA EF+  +P       W+ LLG C++
Sbjct: 379 KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV 438

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ELG  AA  IL  +P+D ++Y++LSN  + AG+W +V  IR+ MKE+ + +  GCS
Sbjct: 439 HGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCS 498

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           WIE++++VH F  G+ +H    +IY  L     +I+E 
Sbjct: 499 WIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEM 536



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 190/369 (51%), Gaps = 37/369 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           ++  ++VFD++P+ N+V+ T +I RFA+     +AI LF  M L    P  FT+ SV+ +
Sbjct: 1   WAPAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 60

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T L  L LGKQLH+   ++GL  +V VG +++D+Y K ++                   
Sbjct: 61  CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAA------------------- 101

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR-NEEAVNLFIEMLREGL 236
                        +D+ K+F++MP  NV+SW A+I  Y+Q+G  ++EA+ LF +M+   +
Sbjct: 102 ---------DGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHI 152

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV-FVGNSLISFYAKCGSMEDSL 295
            PNH +    + A  N++    G+  ++ AVK LG   V  VGNSLIS YA+ G MED+ 
Sbjct: 153 RPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK-LGIASVNCVGNSLISMYARSGRMEDAR 211

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
             FD L E+N+V++NA++ GYA+N + EEA   F  +   GI  +  T   LL      G
Sbjct: 212 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 271

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            + KG     +      G  K     C  ++ + SR G  + A +   ++  D  +  W 
Sbjct: 272 AMGKGEQIHGRLL---KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWT 327

Query: 414 ALLGGCQIH 422
           +++ G   H
Sbjct: 328 SMITGFAKH 336



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  + S +     + FD + + N+VS   I+  +AK    EEA  LF+ +    I  S 
Sbjct: 198 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 257

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF S++  + ++  +  G+Q+H    K G +SN  + +A++ +Y +  +IE A +VF +
Sbjct: 258 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 317

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEA 224
             + NV+S+T+MI G  K      AL++F +M       N +++ A++   S  G   E 
Sbjct: 318 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 377

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
              F  M +E G+VP      C +
Sbjct: 378 QKHFNSMYKEHGIVPRMEHYACMV 401


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 158/452 (34%), Positives = 260/452 (57%), Gaps = 36/452 (7%)

Query: 57  KFSSVHQVFD--EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           +  S   VF+   +P+  +VS T I+  +A+     EA+ +FS+M  ++++P      SV
Sbjct: 169 RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSV 228

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + + T L+DL  G+ +HA   K+GL+          DL I L+++               
Sbjct: 229 LNAFTCLQDLKQGRSIHASVVKMGLEIEP-------DLLISLNTMYAK------------ 269

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                  CG +   +      LF +M   N++ WNAMI GY++ G   EA+++F EM+ +
Sbjct: 270 -------CGQVATAKI-----LFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
            + P+  ++  AI A A + +L   +S +    +   + DVF+ ++LI  +AKCGS+E +
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
            LVFD+  +R++V W+A+I GY  +GR  EAI  +  M   G+ PN VT LGLL ACNH+
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437

Query: 355 GLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           G+V +G+ +F+  ++ D  +  + +HYAC++DLL R+G   +A E +  +P  PG+  W 
Sbjct: 438 GMVREGWWFFN--RMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWG 495

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALL  C+ H +VELGE+AA+++ ++DP +   YV LSN  + A  WD V+ +R  MKEKG
Sbjct: 496 ALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKG 555

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           + +  GCSW+E++ ++  F  GD++H   +EI
Sbjct: 556 LNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEI 587



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 191/387 (49%), Gaps = 39/387 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD++P   +     II  +++ +H+++A+ ++S M L  + P  FTF  ++ + + L 
Sbjct: 74  QVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLS 133

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L +G+ +HA   ++G  ++VFV + ++ LY K   +  A  VFE               
Sbjct: 134 HLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFE--------------- 178

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL               +P R +VSW A++  Y+Q G   EA+ +F +M +  + P+   
Sbjct: 179 GL--------------PLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVA 224

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A   +  L  G+S HA  VK   +++  +  SL + YAKCG +  + ++FDK+ 
Sbjct: 225 LVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK 284

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
             N++ WNA+I GYA+NG   EAI+ F  M    +RP+ +++   + AC   G +E+   
Sbjct: 285 SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARS 344

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            Y Y  ++   D   +     + ++D+ ++ G  + A+  ++D   D  +  W A++ G 
Sbjct: 345 MYEYVGRSDYRDDVFIS----SALIDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMIVGY 399

Query: 420 QIHSNVE--LGEFAARRILALDPEDVS 444
            +H      +  + A     + P DV+
Sbjct: 400 GLHGRAREAISLYRAMERGGVHPNDVT 426



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 154/333 (46%), Gaps = 43/333 (12%)

Query: 91  EAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148
           EA  L S +L  N  I    F + S+I S+T    L   KQ+HA    +GLQ + F+ + 
Sbjct: 3   EASCLASPLLYTNSGIHSDSF-YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITK 58

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           ++        I  A +VF+D   P +  +  +I G  +   F+DAL ++  M        
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNM-------- 110

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
                   Q  R               + P+  T P  + A + ++ L MG+  HA   +
Sbjct: 111 --------QLAR---------------VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFD--KLTERNIVTWNAVICGYAQNGRGEEAI 326
                DVFV N LI+ YAKC  +  +  VF+   L ER IV+W A++  YAQNG   EA+
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVD 385
           E F +MR   ++P+ V L+ +L A      +++G S    A +   G+ ++P+    +  
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSI--HASVVKMGLEIEPDLLISLNT 265

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           + ++ G+   AK  L+D    P +  W A++ G
Sbjct: 266 MYAKCGQVATAK-ILFDKMKSPNLILWNAMISG 297


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 167/486 (34%), Positives = 258/486 (53%), Gaps = 8/486 (1%)

Query: 36  VQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYL 95
           V  L   A+    + CG+         ++FDE  D N+V   TI+  + +Q    E + +
Sbjct: 273 VNALMVNALVDMYMKCGA----IDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAV 328

Query: 96  FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
              ML    RP   T  S + + + L+D++ GK  H +  + GL+    V +AI+++Y+K
Sbjct: 329 LGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMK 388

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
               E A RVF+   N   VS+ ++I G ++    E A K+F  MP  ++VSWN MIG  
Sbjct: 389 CGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGAL 448

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
            Q    +EA+ LF  M  EG+  +  T+     A   + AL + K  H    K     D+
Sbjct: 449 VQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDM 508

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
            +G +L+  +A+CG  + ++ VF+K+ +R++  W A I   A  G G  AIE F+ M   
Sbjct: 509 HLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQ 568

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRF 393
           GI+P+GV  + LL A +H GLVE+G+  F   K  D   + P+  HY CMVDLL R+G  
Sbjct: 569 GIKPDGVVFVALLTALSHGGLVEQGWHIFRSMK--DIYGIAPQAVHYGCMVDLLGRAGLL 626

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
            EA   +  +  +P    W +LL  C++H NV++  +AA RI  LDPE    +V+LSN  
Sbjct: 627 SEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIY 686

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           + AG+WD+V+ +R  +KEKG  ++PG S IEI  K+  F TGD +H     I  +L+   
Sbjct: 687 ASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEIC 746

Query: 514 EQIREF 519
            ++R+ 
Sbjct: 747 CRLRDI 752



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 186/389 (47%), Gaps = 44/389 (11%)

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150
           +AI +F +++ +   P  FTF  V+ + T    L  G Q+H    K+G + ++FV ++++
Sbjct: 122 KAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLI 181

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
             Y +   I+   RVF+                               +M  RNVVSW +
Sbjct: 182 HFYGECGEIDCMRRVFD-------------------------------KMSERNVVSWTS 210

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           +IGGY++ G  +EAV+LF EM+  G+ PN  T+   I A A +  L +G+    C  +  
Sbjct: 211 LIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELE 270

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            +++  + N+L+  Y KCG+++ +  +FD+  ++N+V +N ++  Y + G   E +    
Sbjct: 271 LEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLG 330

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLL 387
            M  +G RP+ +T+L  + AC+    V  G   + Y  +  LE    +       ++++ 
Sbjct: 331 EMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNV----CNAIINMY 386

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSY 446
            + G+ +E    ++D   +     W +L+ G   + ++E    +A +I +  P+ D+ S+
Sbjct: 387 MKCGK-QEMACRVFDRMLNKTRVSWNSLIAGFVRNGDME----SAWKIFSAMPDSDLVSW 441

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMT 475
             +  AL     +     + R M+ +G+T
Sbjct: 442 NTMIGALVQESMFKEAIELFRVMQSEGIT 470



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 159/310 (51%), Gaps = 30/310 (9%)

Query: 170 HNP----NVVSYTTMICGLLKRERFEDALKLFQE----MPHRNVVSWNAMIGGYSQTGRN 221
           H+P    N++S  T +      E  + AL+LF E    M    + S  ++I G+S  G  
Sbjct: 63  HHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFS--SLIRGFSACGLG 120

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
            +A+ +F +++  G VP++ T P  + A    AAL  G   H   VK   + D+FV NSL
Sbjct: 121 YKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSL 180

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I FY +CG ++    VFDK++ERN+V+W ++I GYA+ G  +EA+  F  M   GIRPN 
Sbjct: 181 IHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNS 240

Query: 342 VTLLGLLWAC---NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           VT++G++ AC       L E+  +   + +LE   ++       +VD+  + G   +A++
Sbjct: 241 VTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALM----VNALVDMYMKCGAIDKARK 296

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS-----SYVMLSNAL 453
            ++D   D  +  +  ++      SN  + +  AR +LA+  E +        + + +A+
Sbjct: 297 -IFDECVDKNLVLYNTIM------SNY-VRQGLAREVLAVLGEMLKHGPRPDRITMLSAV 348

Query: 454 SVAGKWDNVS 463
           S   + D+VS
Sbjct: 349 SACSELDDVS 358


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 165/511 (32%), Positives = 286/511 (55%), Gaps = 12/511 (2%)

Query: 10  SSLSLNKLSKLHS-LAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEV 68
           S ++L +L ++H+ L  N L+  ++   Q + + A+R  +             +Q+ D+ 
Sbjct: 18  SFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPT--------NLLYSNQILDQC 69

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNL 126
               + +  ++I  ++K     ++   ++++L  N  + P  +TF  ++  + A      
Sbjct: 70  AKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLV-RTCAQSACEA 128

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G  +H    K G + +  V S ++ +Y ++S +    RVFE    P++V  TTM+    K
Sbjct: 129 GPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAK 188

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                 A  LF  MP R+ VSWNAMI GY+Q G++ EA+NLF  M  +G+  N  ++   
Sbjct: 189 CGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISV 248

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A  ++ AL  GK  HA   K   ++ V +G +L+  Y KCG+++ +L VF ++ E+N+
Sbjct: 249 VTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNV 308

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
            TW+  I G A NG G++ +E F  M+  GI PN +T + +L  C+  G V++G S+F  
Sbjct: 309 YTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDS 368

Query: 367 AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            K +     + EHY CMVDL  R+GR +EA  F+  +P  P  G W ALL  C+++ N+E
Sbjct: 369 MKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNME 428

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           LGEFA+R+++ ++ ++  +YV LSN  +  G WD VSN+R+ MK +G++++PGCS +E+ 
Sbjct: 429 LGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVN 488

Query: 487 SKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +VH F +GD++H   D I  +    +++++
Sbjct: 489 GEVHEFFSGDKSHPSYDVIETMWGEISKRLK 519


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/467 (35%), Positives = 265/467 (56%), Gaps = 10/467 (2%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +   VF+EV     V    +I  +       EA  LF RM+L  +   EFTF SV+ +  
Sbjct: 246 AARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACA 305

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVF------VGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            +     GK +H    +  LQ N        V +A++  Y K  +I  A R+F++    +
Sbjct: 306 NVGLFAHGKSVHGQIIR--LQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKD 363

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS+ T++ G ++    + A+++F+EMP++N +SW  M+ GY   G  E+A+ LF +M  
Sbjct: 364 VVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRS 423

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           E + P   T   AI A   + AL  GK  H   V+   +     GN+LI+ YA+CG++++
Sbjct: 424 ENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKE 483

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + L+F  +   + V+WNA+I    Q+G G EA+E F+RM   GI P+ ++ L +L ACNH
Sbjct: 484 AHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNH 543

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           +GLV++G+ YF   K  D G++  E HY  ++DLL R+GR  EA++ +  +PF+P    W
Sbjct: 544 SGLVDEGFRYFESMK-RDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIW 602

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           +A+L GC+   ++ELG  AA ++  + P+   +Y++LSN  S AG W + + +R+ M+++
Sbjct: 603 EAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDR 662

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           G+ + PGCSWIE  +KVHVF+ GD  H    E+Y  L     ++R+ 
Sbjct: 663 GVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKL 709



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 188/372 (50%), Gaps = 21/372 (5%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDL--NVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           P   T  V+  + +D+  +    FD VP    + V    +I  +A+  H   A+ +F  +
Sbjct: 88  PVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 100 LLL-NIRPSEFTFGSVIPSSTALEDLNLGK--QLHAWATKVGLQSNVFVGSAILDLYIKL 156
           L   ++RP +++F +++ +   L ++++    QLH    K G    + V +A++ LY+K 
Sbjct: 148 LASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKC 207

Query: 157 SSIE---EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
            S E   +A +V ++  N + +++TTM+ G ++R     A  +F+E+  +  V WNAMI 
Sbjct: 208 ESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMIS 267

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK----F 269
           GY  +G   EA  LF  M+ E +  +  T    + A AN+     GKS H   ++    F
Sbjct: 268 GYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNF 327

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
           + +  + V N+L++FY+KCG++  +  +FD +T +++V+WN ++ GY ++   ++A+E F
Sbjct: 328 VPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVF 387

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLL 387
           E M       N ++ + ++    H G  E     F++ + E+   +KP    YA  +   
Sbjct: 388 EEMPYK----NELSWMVMVSGYVHGGFAEDALKLFNKMRSEN---VKPCDYTYAGAIAAC 440

Query: 388 SRSGRFKEAKEF 399
              G  K  K+ 
Sbjct: 441 GELGALKHGKQL 452



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 5/191 (2%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ES       +VF+E+P  N +S   ++  +      E+A+ LF++M   N++P ++T+  
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAG 435

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            I +   L  L  GKQLH    ++G + +   G+A++ +Y +  +++EA  +F    N +
Sbjct: 436 AIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNID 495

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFI 229
            VS+  MI  L +     +AL+LF  M    +    +S+  ++   + +G  +E    F 
Sbjct: 496 SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFE 555

Query: 230 EMLRE-GLVPN 239
            M R+ G++P 
Sbjct: 556 SMKRDFGIIPG 566


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 261/451 (57%), Gaps = 42/451 (9%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVVS T II    +      A+ LFSRM    + P+EFT+ +++ +S ++    L  Q+H
Sbjct: 368 NVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIH 423

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   Q    VG+A+L  Y K  S E                               
Sbjct: 424 AQVIKTNYQHIPSVGTALLASYSKFGSTE------------------------------- 452

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           DAL +F+ +  ++VV+W+AM+  ++Q G  E A  LF +M  +G+ PN  T+   I A A
Sbjct: 453 DALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512

Query: 252 NIAA-LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
             +A +  G+ FHA ++K+     + V ++L+S Y++ G+++ + +VF++ T+R++V+WN
Sbjct: 513 CPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWN 572

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I GYAQ+G   +AIE F +M  +GI+ +GVT L ++  C H GLV +G  YF     +
Sbjct: 573 SMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRD 632

Query: 371 ---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
              +P M   EHYACMVDL SR+G+  E    + D+PF  G   W+ LLG C++H NVEL
Sbjct: 633 HKINPTM---EHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVEL 689

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
           G+F+A ++L+L+P D S+YV+LSN  + AGKW     +R+ M  + + +  GCSWI+IK+
Sbjct: 690 GKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKN 749

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           KVH F+  D++H M+D+IY  L+    ++++
Sbjct: 750 KVHSFIAFDKSHPMSDQIYKKLKVIITRLKQ 780



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 150/303 (49%), Gaps = 36/303 (11%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           + CGS  +      +VF+ +P  NVV+ T+++   A    + E + LF RM    I P+ 
Sbjct: 146 MKCGSVCEGI----EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNP 201

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF SV+ +  +   L+LG+++HA + K G +S+VFV ++++++Y K   +E+A  VF  
Sbjct: 202 FTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNW 261

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               ++VS+ T++ GL   E   +AL+LF E          A +G  +Q           
Sbjct: 262 METRDMVSWNTLMAGLQLNECELEALQLFHES--------RATMGKMTQ----------- 302

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
                       ST    I   AN+  L + +  H+C +K    L   V  +L   Y+KC
Sbjct: 303 ------------STYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 289 GSMEDSLLVFDKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           G + D+L +F   T  RN+V+W A+I G  QNG    A+  F RMR + + PN  T   +
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 348 LWA 350
           L A
Sbjct: 411 LKA 413



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 172/395 (43%), Gaps = 36/395 (9%)

Query: 65  FDEVPDLNV-VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
            DE+P  +  V A  ++  +A++    E +  FS      +     T   V+ +  ++ D
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPD 114

Query: 124 LNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             LG+QLH    K G  +  V  G++++D+Y+K  S+ E   VFE               
Sbjct: 115 RVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEG-------------- 160

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            MP +NVV+W +++ G +    + E + LF  M  EG+ PN  T
Sbjct: 161 -----------------MPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFT 203

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A A+  AL +G+  HA +VKF  +  VFV NSL++ YAKCG +ED+  VF+ + 
Sbjct: 204 FASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWME 263

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R++V+WN ++ G   N    EA++ F   R    +    T   ++  C +   +     
Sbjct: 264 TRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQ 323

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
             S   L+    L       + D  S+ G   +A            +  W A++ GC  +
Sbjct: 324 LHS-CVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382

Query: 423 SNVELGE--FAARRILALDPEDVSSYVMLSNALSV 455
            ++ L    F+  R   + P + +   ML  +LS+
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSI 417



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 7/222 (3%)

Query: 18  SKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSAT 77
           + L  L P    +  K + Q +  P++ T  ++  S+         +F  +   +VV+ +
Sbjct: 413 ASLSILPPQIHAQVIKTNYQHI--PSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWS 470

Query: 78  TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STALEDLNLGKQLHAWATK 136
            ++   A+    E A YLF++M +  I+P+EFT  SVI + +     ++ G+Q HA + K
Sbjct: 471 AMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIK 530

Query: 137 VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKL 196
                 + V SA++ +Y +  +I+ A  VFE   + ++VS+ +MI G  +      A++ 
Sbjct: 531 YRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIET 590

Query: 197 FQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           F++M    +    V++ A+I G +  G   E    F  M+R+
Sbjct: 591 FRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRD 632


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 153/457 (33%), Positives = 257/457 (56%), Gaps = 31/457 (6%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
             VFD    ++VV  +T+I  +      E A+ +F  +L L I+P+     S +P+  ++
Sbjct: 404 QNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASM 463

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             + +G++LH +  K   +   +V SA++D+Y K                          
Sbjct: 464 AAMRIGQELHGYVLKNAYEGRCYVESALMDMYSK-------------------------- 497

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG L    +     +F +M  ++ V+WN+MI  ++Q G  EEA++LF +M+ EG+  N+ 
Sbjct: 498 CGRLDLSHY-----MFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNV 552

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A A + A+  GK  H   +K   + D+F  ++LI  Y KCG++E +L VF+ +
Sbjct: 553 TISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHM 612

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            E+N V+WN++I  Y  +G  +E+++    M+  G + + VT L L+ AC H G V++G 
Sbjct: 613 PEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGL 672

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F     E     + EH +CMVDL SR+G+  +A +F+ D+PF P  G W ALL  C++
Sbjct: 673 RLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRV 732

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVEL E A++ +  LDP +   YV++SN  +VAG+WD VS +RR MK+K + ++PG S
Sbjct: 733 HRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYS 792

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+++ +  H+FV  D+NH  ++EIY  L+S   ++++
Sbjct: 793 WVDVNNTSHLFVAADKNHPDSEEIYMSLKSLIIELKQ 829



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 167/348 (47%), Gaps = 40/348 (11%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
            L +C +   L    +LH+LA  Y +E + A    L         VS  ++        +
Sbjct: 254 FLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTL---------VSMYAKCQCLEEAWR 304

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F  +P  ++V+   +I    +    ++A+ LF  M    ++P   T  S++P+ T L  
Sbjct: 305 LFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNG 364

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              GK++H +  +     +VF+ SA++D+Y K   +  A  VF+ T + +VV  +TMI  
Sbjct: 365 FKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMI-- 422

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                         GY     +E AV +F  +L  G+ PN   +
Sbjct: 423 -----------------------------SGYVLNRMSEAAVKMFRYLLALGIKPNAVMV 453

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A++AA+ +G+  H   +K   +   +V ++L+  Y+KCG ++ S  +F K++ 
Sbjct: 454 ASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSA 513

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           ++ VTWN++I  +AQNG  EEA++ F +M + G++ N VT+  +L AC
Sbjct: 514 KDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSAC 561



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 148/323 (45%), Gaps = 36/323 (11%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT---IIGRFAKQHHYEEAIYLFSRM 99
           A++T  V     + +F     VF  +P     +A     +I  F    H+  A+  + +M
Sbjct: 77  ALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKM 136

Query: 100 LL--LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
                + RP   T   V+ S  AL  L+LG+ +H     +GL  +++VGSA++ +Y    
Sbjct: 137 WAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAG 196

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
            ++ A  VF+                                M  R+ V WN M+ GY +
Sbjct: 197 LLDGAREVFDG-------------------------------MDERDCVLWNVMMDGYVK 225

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
            G    AV LF  M   G  PN +TL C +   A  A L  G   H  AVK+  + +V V
Sbjct: 226 AGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAV 285

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N+L+S YAKC  +E++  +F  +   ++VTWN +I G  QNG  ++A+  F  M+ +G+
Sbjct: 286 ANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGL 345

Query: 338 RPNGVTLLGLLWACNHTGLVEKG 360
           +P+ VTL  LL A       ++G
Sbjct: 346 QPDSVTLASLLPALTELNGFKQG 368


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 167/495 (33%), Positives = 281/495 (56%), Gaps = 6/495 (1%)

Query: 30  ETQKASVQKLETPAIRTDSV--SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH 87
           ET +A  ++++  ++ + +V  S  +   +      +F+ + + ++VS  TII  + +  
Sbjct: 399 ETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNG 458

Query: 88  HYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
               A+  FSRML  + + P  FT  SV+ +   L  L +GKQ+H++  + G+  +  + 
Sbjct: 459 LDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIM 518

Query: 147 SAILDLYIKLSSIEEATRVFEDT--HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN 204
           +A++  Y K  S+E A R+ +     + NV+S+T ++ G +K    + A ++F  M +R+
Sbjct: 519 NALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRD 578

Query: 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
           V++W AMI GY Q G+N+EA+ LF  M+  G  PN  TL   + A A++A L  GK  H 
Sbjct: 579 VIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHC 638

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN-IVTWNAVICGYAQNGRGE 323
            A++ L +  V V N++I+ YA+ GS+  +  VFD++  R   +TW ++I   AQ+G GE
Sbjct: 639 KAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGE 698

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383
           +A+  FE M   G++P+ +T +G+L AC H G V+KG  Y+ Q + E   + +  HYACM
Sbjct: 699 QAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACM 758

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443
           VDL +R+G   EA EF+  +P  P    W +LL  C++  N +L E AA ++L++DP + 
Sbjct: 759 VDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNS 818

Query: 444 SSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMND 503
            +Y  L+N  S  G+W++ + I +  K+KG+ +  G SW  ++ KVHVF   D  H   D
Sbjct: 819 GAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRD 878

Query: 504 EIYAVLRSCTEQIRE 518
            IY       E+I++
Sbjct: 879 SIYRKAAEMWEEIKK 893



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 172/349 (49%), Gaps = 34/349 (9%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S +    H VF E+PD + VS T +I    +   + +A+  F  M+     PS+FT  
Sbjct: 292 AKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLT 351

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+ S  A+E   +G+++H +  K+GL S V V +++L +Y K    E A  VFE     
Sbjct: 352 NVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVR 411

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +V S+  M+     + R E A+ +F+ M  R++VSWN +I GY+Q G +  A+  F  ML
Sbjct: 412 SVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRML 471

Query: 233 R-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
               + P+  T+   + A AN+  L MGK  H+  ++        + N+LIS YAK GS+
Sbjct: 472 SASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSV 531

Query: 292 E-------------------DSLL--------------VFDKLTERNIVTWNAVICGYAQ 318
           E                    +LL              +FD +  R+++ W A+I GY Q
Sbjct: 532 ETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQ 591

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           NG+ +EA+E F  M + G  PN  TL  +L AC     ++ G     +A
Sbjct: 592 NGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKA 640



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 131/272 (48%), Gaps = 38/272 (13%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLY----IKLSSIEEATRVFEDT--HNPNVVSYTTM 180
           G+ +HA A K GL  + ++ + +L  Y    +      EA  +F+D      N  ++ ++
Sbjct: 228 GRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSL 287

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           +    K  R  DA  +F EMP R+ VSW  MI G +++GR  +AV  F++M+ EG  P+ 
Sbjct: 288 LSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQ 347

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL   + + A + A G+G+  H   VK      V V NS++  Y KCG  E +  VF++
Sbjct: 348 FTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFER 407

Query: 301 -------------------------------LTERNIVTWNAVICGYAQNGRGEEAIEFF 329
                                          + ER+IV+WN +I GY QNG    A++FF
Sbjct: 408 MQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFF 467

Query: 330 ERM-RINGIRPNGVTLLGLLWACNHTGLVEKG 360
            RM   + + P+  T+  +L AC +  +++ G
Sbjct: 468 SRMLSASSMEPDAFTVTSVLSACANLRMLKMG 499


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 253/468 (54%), Gaps = 34/468 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S + +F     VFD +   NVVS  +++  + +    EEA+ +F  M+   + P+EF   
Sbjct: 186 SRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALS 245

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+    A   + LG+QLH  A K  L +++ V +A+L +Y +   +EE   +     NP
Sbjct: 246 IVL---GACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP 302

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           ++VS                               W   I    Q G  E+A+ L  +M 
Sbjct: 303 DLVS-------------------------------WTTAISANFQNGFGEKAIALLCQMH 331

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            EG  PN       + + A++A+L  G  FH  A+K     ++  GN+LI+ Y+KCG M 
Sbjct: 332 SEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMG 391

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            + L FD +   ++ +WN++I G+AQ+G   +A+E F +MR NGI+P+  T LG+L  CN
Sbjct: 392 SARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCN 451

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+G+VE+G  +F     +      P HYACM+D+L R+GRF EA   + D+PF+P    W
Sbjct: 452 HSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIW 511

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           K LL  C++H N+++G+ AA R++ L   D +SYV++SN  ++ G+W++   +RR M E 
Sbjct: 512 KTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDET 571

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           G+ +  GCSWIEI ++VH F + D +H  +D IY +L      +++F+
Sbjct: 572 GVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQDFD 619



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 186/400 (46%), Gaps = 56/400 (14%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS      +  +VFD +   +VV  T++I  F +   +E A     +ML   ++P+E T
Sbjct: 89  CGS----LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHT 144

Query: 111 FGSVIPSSTALEDLNLGKQLHAW-ATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFED 168
             +++ +   +    LG+Q+H +   K+GL+S +V+  +A++D Y +    + A  VF+ 
Sbjct: 145 MTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDS 200

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
            H           C                    +NVVSW +M+  Y + GR EEA+ +F
Sbjct: 201 LH-----------C--------------------KNVVSWCSMMQLYIRDGRLEEALQVF 229

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M+ EG+ PN   L   + A  +I   G+G+  H  A+K     D+ V N+L+S Y + 
Sbjct: 230 GDMISEGVDPNEFALSIVLGACGSI---GLGRQLHCSAIKHDLITDIRVSNALLSMYGRT 286

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +E+   + +K+   ++V+W   I    QNG GE+AI    +M   G  PNG     +L
Sbjct: 287 GLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVL 346

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC----MVDLLSRSGRFKEAKEFLYDLP 404
            +C     +++G  +   A       L  +   C    ++++ S+ G+   A+   +D+ 
Sbjct: 347 SSCADVASLDQGMQFHCLAL-----KLGCDSEICTGNALINMYSKCGQMGSAR-LAFDVM 400

Query: 405 FDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPED 442
               +  W +L+ G   H  +N  L  F+  R   + P+D
Sbjct: 401 HTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDD 440



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 141/291 (48%), Gaps = 37/291 (12%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  NVV+ T+++  + +    E A+ +F+ M+   + P++F   + + +   L  L  G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +Q+H+ A + G   + ++GS ++++Y +  S+  A  VF+   +P+VV            
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVG----------- 109

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                               + ++I  + + G  E A    I+ML++GL PN  T+   +
Sbjct: 110 --------------------YTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTIL 149

Query: 248 IAAANIAALGMGKSFHACAVKFLG--KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            A   +    +G+  H   +K +G     V+   +LI FY++ G  + +  VFD L  +N
Sbjct: 150 TACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKN 205

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +V+W +++  Y ++GR EEA++ F  M   G+ PN   L  +L AC   GL
Sbjct: 206 VVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL 256



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 114/200 (57%), Gaps = 7/200 (3%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           MP +NVV+W +++ GY++ GR E A+ +F +M+  G+ PN      A++A A++ AL  G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           +  H+ AV+     D ++G+ LI  Y++CGS+  +  VFD++   ++V + ++I  + +N
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
           G  E A E   +M   G++PN  T+  +L AC    L ++ + Y     ++  G+     
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV-LGQQIHGYL----IKKIGLRSQSV 175

Query: 380 YA--CMVDLLSRSGRFKEAK 397
           Y+   ++D  SR+G FK AK
Sbjct: 176 YSSTALIDFYSRNGEFKLAK 195



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 10/163 (6%)

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +  +N+V W +V+ GY +NGR E A+  F  M  +G+ PN       L AC   G +  G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 361 ---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
              +S   +A       +     +C++++ SR G    AKE ++D    P +  + +L+ 
Sbjct: 61  EQVHSLAVRAGFAGDAWIG----SCLIEMYSRCGSLPAAKE-VFDRMDSPDVVGYTSLIS 115

Query: 418 GCQIHSNVELGEFAARRIL--ALDPEDVSSYVMLSNALSVAGK 458
               +   EL   A  ++L   L P + +   +L+    V G+
Sbjct: 116 AFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQ 158


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 262/468 (55%), Gaps = 4/468 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           + SD       VFD     +      +I  F+     E ++ L+ RML  +   + +TF 
Sbjct: 60  TSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFP 119

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ + + L       Q+HA  TK+G +++V+  +++++ Y    + + A  +F+    P
Sbjct: 120 SLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEP 179

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           + VS+ ++I G +K  + + AL LF++M  +N +SW  MI GY Q   N+EA+ LF EM 
Sbjct: 180 DDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ 239

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              + P++ +L  A+ A A + AL  GK  H+   K   ++D  +G  LI  YAKCG ME
Sbjct: 240 NSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEME 299

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++L VF  + ++++  W A+I GYA +G G EAI  F  M+  GI+PN +T   +L AC+
Sbjct: 300 EALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACS 359

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           +TGLVE+G   F    +E    LKP  EHY C+VDLL R+G   EAK F+ ++P  P   
Sbjct: 360 YTGLVEEGKLIFYS--MERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAV 417

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL  C+IH N+ELGE     ++A+DP     YV  +N  ++  KWD  +  RR MK
Sbjct: 418 IWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMK 477

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           E+G+ +VPGCS I ++   H F+ GDR+H   ++I +  R    ++ E
Sbjct: 478 EQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEE 525



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 158/347 (45%), Gaps = 32/347 (9%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSS---IEEATRVFEDTHNPNVVSYTTMICGL 184
           KQ+HA   K GL  + +  +  L   I  +S   +  A  VF+    P+   +  MI G 
Sbjct: 31  KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 90

Query: 185 LKRERFEDALKLFQEM-----PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
              +  E +L L+Q M     PH N  ++ +++   S     EE   +  ++ + G   +
Sbjct: 91  SCSDEPERSLLLYQRMLCSSAPH-NAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEND 149

Query: 240 HSTLPCAIIAAAN--IAALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSL 295
                   + A N  I +  +  +F    + F  + + D    NS+I  Y K G M+ +L
Sbjct: 150 --------VYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIAL 201

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +F K+ E+N ++W  +I GY Q    +EA++ F  M+ + + P+ V+L   L AC   G
Sbjct: 202 TLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLG 261

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            +E+G   +SY ++ ++    +L       ++D+ ++ G  +EA E   ++     +  W
Sbjct: 262 ALEQGKWIHSYLNKTRIRMDSVLG----CVLIDMYAKCGEMEEALEVFKNIK-KKSVQAW 316

Query: 413 KALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            AL+ G   H +    + +F   + + + P +V ++  +  A S  G
Sbjct: 317 TALISGYAYHGHGREAISKFMEMQKMGIKP-NVITFTAVLTACSYTG 362


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  307 bits (787), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 256/457 (56%), Gaps = 31/457 (6%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
             V+D    ++VV  +T+I  +      +EA+ +F  +L   IRP+     SV+P+  ++
Sbjct: 403 QSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             + LG++LH++A K   +   +V SA++D+Y K                          
Sbjct: 463 AAMKLGQELHSYALKNAYEGRCYVESALMDMYAK-------------------------- 496

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG L    +     +F ++  ++ V+WN+MI  ++Q G  EEA+NLF EM  EG+  ++ 
Sbjct: 497 CGRLDLSHY-----IFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNV 551

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A A++ A+  GK  H   +K   + D+F  ++LI  Y KCG++E +  VF+ +
Sbjct: 552 TISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESM 611

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            E+N V+WN++I  Y   G  +E++     M+  G + + VT L L+ AC H G V++G 
Sbjct: 612 PEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGL 671

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F     E     + EH+ACMVDL SR+G+  +A E + D+PF P  G W ALL  C++
Sbjct: 672 RLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRV 731

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVEL E A++ +  LDP +   YV++SN  +VAG+WD VS +RR MK+  + ++PG S
Sbjct: 732 HRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYS 791

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+++ +  H+FV  D++H  +++IY  L+S   ++RE
Sbjct: 792 WVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELRE 828



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 31/245 (12%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P   TF  V+ S  AL  + LG+ +H  A  +GL  ++FVGSA++ +Y            
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYAN---------- 193

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
                            GLL      DA ++F  M  R+ V WN M+ GY + G    AV
Sbjct: 194 ----------------GGLL-----WDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAV 232

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF +M   G  PN +TL C +  +A  + L  G   H  AVK+  + +V V N+L+S Y
Sbjct: 233 ELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMY 292

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           AKC  ++D   +F  +   ++VTWN +I G  QNG  ++A+  F  M+ +GIRP+ VTL+
Sbjct: 293 AKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLV 352

Query: 346 GLLWA 350
            LL A
Sbjct: 353 SLLPA 357



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 149/331 (45%), Gaps = 32/331 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD + + + V    ++  + K      A+ LF  M      P+  T    +  S    
Sbjct: 202 QVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATES 261

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL  G QLH  A K GL+S V V + ++ +Y K   ++                      
Sbjct: 262 DLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD---------------------- 299

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                    D  KLF  MP  ++V+WN MI G  Q G  ++A+ LF +M + G+ P+  T
Sbjct: 300 ---------DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVT 350

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A  ++     GK  H   V+    +DVF+ ++L+  Y KC ++  +  V+D   
Sbjct: 351 LVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSK 410

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             ++V  + +I GY  NG  +EA++ F  +   GIRPN V +  +L AC     ++ G  
Sbjct: 411 AIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQE 470

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
             S A L++    +    + ++D+ ++ GR 
Sbjct: 471 LHSYA-LKNAYEGRCYVESALMDMYAKCGRL 500



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 5/184 (2%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV---VSWNAMIGGYSQTGRNEEAVN 226
           H  +    T ++   +   RF DA+ +F  +P       + WN +I G +  G    A+ 
Sbjct: 71  HATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALL 130

Query: 227 LFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
            +++M       +P+  T P  + + A + A+ +G+  H  A       D+FVG++LI  
Sbjct: 131 FYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKM 190

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YA  G + D+  VFD + ER+ V WN ++ GY + G    A+E F  MR +G  PN  TL
Sbjct: 191 YANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATL 250

Query: 345 LGLL 348
              L
Sbjct: 251 ACFL 254


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 253/468 (54%), Gaps = 34/468 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S + +F     VFD +   NVVS  +++  + +    EEA+ +F  M+   + P+EF   
Sbjct: 259 SRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALS 318

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+    A   + LG+QLH  A K  L +++ V +A+L +Y +   +EE   +     NP
Sbjct: 319 IVL---GACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP 375

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           ++VS                               W   I    Q G  E+A+ L  +M 
Sbjct: 376 DLVS-------------------------------WTTAISANFQNGFGEKAIALLCQMH 404

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            EG  PN       + + A++A+L  G  FH  A+K     ++  GN+LI+ Y+KCG M 
Sbjct: 405 SEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMG 464

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            + L FD +   ++ +WN++I G+AQ+G   +A+E F +MR NGI+P+  T LG+L  CN
Sbjct: 465 SARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCN 524

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+G+VE+G  +F     +      P HYACM+D+L R+GRF EA   + D+PF+P    W
Sbjct: 525 HSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIW 584

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           K LL  C++H N+++G+ AA R++ L   D +SYV++SN  ++ G+W++   +RR M E 
Sbjct: 585 KTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDET 644

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           G+ +  GCSWIEI ++VH F + D +H  +D IY +L      +++F+
Sbjct: 645 GVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQDFD 692



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 202/463 (43%), Gaps = 83/463 (17%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S + +    +FD +P  NVV+ T+++  + +    E A+ +F+ M+   + P++F   +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + +   L  L  G+Q+H+ A + G   + ++GS ++++Y +  S+  A  VF+   +P+
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEM------PH------------------------- 202
           VV YT++I    +   FE A +   +M      P+                         
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 203 ------RNVVSWNAMIGGYSQTG-------------------------------RNEEAV 225
                 ++V S  A+I  YS+ G                               R EEA+
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEAL 299

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            +F +M+ EG+ PN   L   + A  +I   G+G+  H  A+K     D+ V N+L+S Y
Sbjct: 300 QVFGDMISEGVDPNEFALSIVLGACGSI---GLGRQLHCSAIKHDLITDIRVSNALLSMY 356

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            + G +E+   + +K+   ++V+W   I    QNG GE+AI    +M   G  PNG    
Sbjct: 357 GRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFS 416

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC----MVDLLSRSGRFKEAKEFLY 401
            +L +C     +++G  +   A       L  +   C    ++++ S+ G+   A+   +
Sbjct: 417 SVLSSCADVASLDQGMQFHCLAL-----KLGCDSEICTGNALINMYSKCGQMGSAR-LAF 470

Query: 402 DLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPED 442
           D+     +  W +L+ G   H  +N  L  F+  R   + P+D
Sbjct: 471 DVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDD 513



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 129/229 (56%), Gaps = 7/229 (3%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P+VV     +  L+K  R  DAL LF  MP +NVV+W +++ GY++ GR E A+ +F +
Sbjct: 45  SPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFAD 104

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+  G+ PN      A++A A++ AL  G+  H+ AV+     D ++G+ LI  Y++CGS
Sbjct: 105 MVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGS 164

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  VFD++   ++V + ++I  + +NG  E A E   +M   G++PN  T+  +L A
Sbjct: 165 LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTA 224

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAK 397
           C    L ++ + Y     ++  G+     Y+   ++D  SR+G FK AK
Sbjct: 225 CPRV-LGQQIHGYL----IKKIGLRSQSVYSSTALIDFYSRNGEFKLAK 268



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           DV +    ++   K G + D+L +FD++  +N+V W +V+ GY +NGR E A+  F  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            +G+ PN       L AC   G +  G   +S   +A       +     +C++++ SR 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIG----SCLIEMYSRC 162

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDVSSYVM 448
           G    AKE ++D    P +  + +L+     +   EL   A  ++L   L P + +   +
Sbjct: 163 GSLPAAKE-VFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTI 221

Query: 449 LSNALSVAGK 458
           L+    V G+
Sbjct: 222 LTACPRVLGQ 231


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 174/511 (34%), Positives = 277/511 (54%), Gaps = 12/511 (2%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           SL KL ++H  A    +   K   Q L    + T +   GS  D      +VF+ + + +
Sbjct: 15  SLEKLKQIHGKAVTLGLLCSKR--QHLACKLLNTYT-QLGSPVD----AQKVFNHIQNPD 67

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
           +VS T +I  +       +A  +FS +    +RP  F     + +    +DL+ G+ +H 
Sbjct: 68  IVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHG 127

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
              +  L S+  VG+A++D+Y +  +IE A  VF+     +V S+T+++ G +K    E 
Sbjct: 128 MVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEA 187

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAIIAAA 251
           A ++F EMP RN VSW AMI GY Q       + LF EM  EG   P   T+   +   A
Sbjct: 188 ARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCA 247

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +I A  +G S H    K    LDV V N+L+  YAK G++  +L +F ++ +R++ +W  
Sbjct: 248 DIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTT 307

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I G A +G+G  A+E F  M  +G+ PN VTLL +L AC+H GLV +G S F   K+  
Sbjct: 308 MISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQ--KMVQ 365

Query: 372 PGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
              +KP  +HY CMVDLL R+G  +EAKE +  +P  P    W++LL  C +H N+ L E
Sbjct: 366 CHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAE 425

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
            A + I+ L+P+D   Y++L N    A +W++    R+ M+++ + + PGCSW+E+   V
Sbjct: 426 MAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVV 485

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           H F+  D  H +  ++Y VL + TEQ+++ +
Sbjct: 486 HEFLAEDAVHCIRADVYTVLEAITEQMKDLD 516


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 272/478 (56%), Gaps = 37/478 (7%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           IRT  +   S+        ++F E+  + NVVS T +I  F +    EEA+ LFS M   
Sbjct: 332 IRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            +RP+EFT+  ++   TAL  ++   ++HA   K   + +  VG+A+LD Y+KL  +EEA
Sbjct: 392 GVRPNEFTYSVIL---TALPVIS-PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEA 447

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            +V                               F  +  +++V+W+AM+ GY+QTG  E
Sbjct: 448 AKV-------------------------------FSGIDDKDIVAWSAMLAGYAQTGETE 476

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAI-IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
            A+ +F E+ + G+ PN  T    + + AA  A++G GK FH  A+K      + V ++L
Sbjct: 477 AAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSAL 536

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           ++ YAK G++E +  VF +  E+++V+WN++I GYAQ+G+  +A++ F+ M+   ++ +G
Sbjct: 537 LTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 596

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
           VT +G+  AC H GLVE+G  YF     +       EH +CMVDL SR+G+ ++A + + 
Sbjct: 597 VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIE 656

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
           ++P   G   W+ +L  C++H   ELG  AA +I+A+ PED ++YV+LSN  + +G W  
Sbjct: 657 NMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQE 716

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            + +R+ M E+ + + PG SWIE+K+K + F+ GDR+H + D+IY  L   + ++++ 
Sbjct: 717 RAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDL 774



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 143/297 (48%), Gaps = 31/297 (10%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S +  + H +FD+ P  +  S  +++  F++    +EA  LF  +  L +      F SV
Sbjct: 40  SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSV 99

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +  S  L D   G+QLH    K G   +V VG++++D Y+K S+ ++  +VF++    NV
Sbjct: 100 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           V++TT+I                                GY++   N+E + LF+ M  E
Sbjct: 160 VTWTTLI-------------------------------SGYARNSMNDEVLTLFMRMQNE 188

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G  PN  T   A+   A     G G   H   VK      + V NSLI+ Y KCG++  +
Sbjct: 189 GTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKA 248

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            ++FDK   +++VTWN++I GYA NG   EA+  F  MR+N +R +  +   ++  C
Sbjct: 249 RILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLC 305



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 174/388 (44%), Gaps = 52/388 (13%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           L+  ++ T  V    +   F    +VFDE+ + NVV+ TT+I  +A+    +E + LF R
Sbjct: 125 LDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMR 184

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M     +P+ FTF + +           G Q+H    K GL   + V +++++LY+K   
Sbjct: 185 MQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLK--- 241

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
                                  CG +++ R      LF +   ++VV+WN+MI GY+  
Sbjct: 242 -----------------------CGNVRKARI-----LFDKTEVKSVVTWNSMISGYAAN 273

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G + EA+ +F  M    +  + S+    I   AN+  L   +  H   VK+    D  + 
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333

Query: 279 NSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            +L+  Y+KC +M D+L +F ++    N+V+W A+I G+ QN   EEA++ F  M+  G+
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393

Query: 338 RPNGVTLLGLLWACN-------HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
           RPN  T   +L A         H  +V+  Y   S                 ++D   + 
Sbjct: 394 RPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG------------TALLDAYVKL 441

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           G+ +EA +    +  D  I  W A+L G
Sbjct: 442 GKVEEAAKVFSGID-DKDIVAWSAMLAG 468



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 3/247 (1%)

Query: 173 NVVSYTTMIC-GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           N V+   + C G +   R  +A  LF + P R+  S+ +++ G+S+ GR +EA  LF+ +
Sbjct: 25  NGVAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNI 84

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            R G+  + S     +  +A +     G+  H   +KF    DV VG SL+  Y K  + 
Sbjct: 85  HRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNF 144

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +D   VFD++ ERN+VTW  +I GYA+N   +E +  F RM+  G +PN  T    L   
Sbjct: 145 KDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVL 204

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
              G+  +G    +           P   + +++L  + G  ++A+  L+D      +  
Sbjct: 205 AEEGVGGRGLQVHTVVVKNGLDKTIPVSNS-LINLYLKCGNVRKAR-ILFDKTEVKSVVT 262

Query: 412 WKALLGG 418
           W +++ G
Sbjct: 263 WNSMISG 269


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  307 bits (786), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 256/457 (56%), Gaps = 31/457 (6%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
             V+D    ++VV  +T+I  +      +EA+ +F  +L   IRP+     SV+P+  ++
Sbjct: 403 QSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             + LG++LH++A K   +   +V SA++D+Y K                          
Sbjct: 463 AAMKLGQELHSYALKNAYEGRCYVESALMDMYAK-------------------------- 496

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG L    +     +F ++  ++ V+WN+MI  ++Q G  EEA+NLF EM  EG+  ++ 
Sbjct: 497 CGRLDLSHY-----IFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNV 551

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A A++ A+  GK  H   +K   + D+F  ++LI  Y KCG++E +  VF+ +
Sbjct: 552 TISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESM 611

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            E+N V+WN++I  Y   G  +E++     M+  G + + VT L L+ AC H G V++G 
Sbjct: 612 PEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGL 671

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F     E     + EH+ACMVDL SR+G+  +A E + D+PF P  G W ALL  C++
Sbjct: 672 RLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRV 731

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVEL E A++ +  LDP +   YV++SN  +VAG+WD VS +RR MK+  + ++PG S
Sbjct: 732 HRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYS 791

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W+++ +  H+FV  D++H  +++IY  L+S   ++RE
Sbjct: 792 WVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELRE 828



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 31/245 (12%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P   TF  V+ S  AL  + LG+ +H  A  +GL  ++FVGSA++ +Y            
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYAN---------- 193

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
                            GLL      DA ++F  M  R+ V WN M+ GY + G    AV
Sbjct: 194 ----------------GGLL-----WDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAV 232

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF +M   G  PN +TL C +  +A  + L  G   H  AVK+  + +V V N+L+S Y
Sbjct: 233 ELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMY 292

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           AKC  ++D   +F  +   ++VTWN +I G  QNG  ++A+  F  M+ +GIRP+ VTL+
Sbjct: 293 AKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLV 352

Query: 346 GLLWA 350
            LL A
Sbjct: 353 SLLPA 357



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 149/331 (45%), Gaps = 32/331 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD + + + V    ++  + K      A+ LF  M      P+  T    +  S    
Sbjct: 202 QVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATES 261

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL  G QLH  A K GL+S V V + ++ +Y K   ++                      
Sbjct: 262 DLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD---------------------- 299

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                    D  KLF  MP  ++V+WN MI G  Q G  ++A+ LF +M + G+ P+  T
Sbjct: 300 ---------DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVT 350

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A  ++     GK  H   V+    +DVF+ ++L+  Y KC ++  +  V+D   
Sbjct: 351 LVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSK 410

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             ++V  + +I GY  NG  +EA++ F  +   GIRPN V +  +L AC     ++ G  
Sbjct: 411 AIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQE 470

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
             S A L++    +    + ++D+ ++ GR 
Sbjct: 471 LHSYA-LKNAYEGRCYVESALMDMYAKCGRL 500



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 5/184 (2%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV---VSWNAMIGGYSQTGRNEEAVN 226
           H  +    T ++   +   RF DA+ +F  +P       + WN +I G +  G    A+ 
Sbjct: 71  HATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALL 130

Query: 227 LFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
            +++M       +P+  T P  + + A + A+ +G+  H  A       D+FVG++LI  
Sbjct: 131 FYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKM 190

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YA  G + D+  VFD + ER+ V WN ++ GY + G    A+E F  MR +G  PN  TL
Sbjct: 191 YANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATL 250

Query: 345 LGLL 348
              L
Sbjct: 251 ACFL 254


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 268/459 (58%), Gaps = 6/459 (1%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H +F +V   N    + +I  +A+   +  +I L++ ML  N+ P  FTF ++    + L
Sbjct: 66  HLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALF---SLL 122

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           ++ +LG QLH  A   G  ++++VG+ I+ +Y+K   ++ A +VF++  + +VV++T +I
Sbjct: 123 KNPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELI 182

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    + A +LF  +P +++V+W +M+ GYSQ    ++A+  F +M   G+V +  
Sbjct: 183 VAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEI 242

Query: 242 TLPCAIIAAANIAALGMGKSFHACA--VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           TL  AI A A +   G        A   +F    +VFVG++LI  Y+KCG++E++  VF 
Sbjct: 243 TLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFK 302

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + E N+ +++++I G+A +GR   AI+ F  M  NGI+PN VT +GL  AC+H G+VE+
Sbjct: 303 GMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQ 362

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G   F   K         +HYACM DLL R+G  ++A + +  +P +P  G W ALLG  
Sbjct: 363 GQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGAS 422

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
            IH N ++ E A+R +  L+P+++ +Y++LS   ++A KWD+VS +R+ M+EK + + PG
Sbjct: 423 HIHGNPDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPG 482

Query: 480 CSWIEIKSK-VHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           CSW+E K+  +H F  GD  H   +EI   L    ++++
Sbjct: 483 CSWVEAKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLK 521


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/526 (32%), Positives = 272/526 (51%), Gaps = 71/526 (13%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD +P  N+VS T +I   ++   + EAI  F  M +    P++F F S I +  +L 
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            + +GKQ+H  A K G+ S +FVGS + D+Y K  ++ +A +VFE+    + VS+T MI 
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 183 GLLKRERFEDALKLFQEM------------------------------PHRNVVSW---- 208
           G  K   FE+AL  F++M                               H +VV      
Sbjct: 181 GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFES 240

Query: 209 -----NAMIGGYSQTGRNEEAVN--------------------------------LFIEM 231
                NA+   YS+ G  E A N                                +F+E+
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            R+G+ PN  T    I A AN AAL  G   HA  +K     D FV + L+  Y KCG +
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           E ++  FD++ +   + WN+++  + Q+G G++AI+ FERM   G++PN +T + LL  C
Sbjct: 361 EQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGC 420

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GLVE+G  YF         +   EHY+C++DLL R+GR KEAKEF+  +PF+P    
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFG 480

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W + LG C+IH + E+G+ AA +++ L+P++  + V+LSN  +   +W++V ++R  M++
Sbjct: 481 WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRD 540

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
             + ++PG SW+++  K HVF   D +H     IY  L +  +QI+
Sbjct: 541 GNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIK 586



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 122/252 (48%), Gaps = 31/252 (12%)

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VI +    + L  GKQLHA     G     F+ + ++++Y K                  
Sbjct: 11  VIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSK------------------ 52

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                   CG L     + ALKLF  MP RN+VSW AMI G SQ  +  EA+  F  M  
Sbjct: 53  --------CGEL-----DHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRI 99

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G VP       AI A A++ ++ MGK  H  A+KF    ++FVG++L   Y+KCG+M D
Sbjct: 100 CGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFD 159

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VF+++  ++ V+W A+I GY++ G  EEA+  F++M    +  +   L   L AC  
Sbjct: 160 ACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGA 219

Query: 354 TGLVEKGYSYFS 365
               + G S  S
Sbjct: 220 LKACKFGRSVHS 231



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 7/222 (3%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           TD  S   + +  S+V  +  E    NVVS T +I  + +    E+ + +F  +    I 
Sbjct: 249 TDMYSKAGDMESASNVFGIDSECR--NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 306

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+EFTF S+I +      L  G QLHA   K+    + FV S ++D+Y K   +E+A + 
Sbjct: 307 PNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQA 366

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRN 221
           F++  +P  +++ +++    +    +DA+K+F+ M  R    N +++ +++ G S  G  
Sbjct: 367 FDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLV 426

Query: 222 EEAVNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSF 262
           EE ++ F  M +  G+VP      C I        L   K F
Sbjct: 427 EEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEF 468


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 254/450 (56%), Gaps = 33/450 (7%)

Query: 70   DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
            D ++ S   I+  + K +   +A+  FS M  + I   E T  + I +S  L +L  GKQ
Sbjct: 1061 DFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ 1120

Query: 130  LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
            + A+A K+G  ++++V S +LD+YIK                          CG +    
Sbjct: 1121 IQAYAIKLGFNNDLWVSSGVLDMYIK--------------------------CGDMP--- 1151

Query: 190  FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
              +AL+LF E+   + V+W  MI GY + G  + A++++  M   G+ P+  T    I A
Sbjct: 1152 --NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 250  AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            ++ + AL  GK  HA  VK    LD FVG SL+  Y KCGS++D+  VF K+  R +V W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 310  NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
            NA++ G AQ+G  +EA+  F  M+ NGI+P+ VT +G+L AC+H+GL  + Y YF  A  
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF-DAMF 1328

Query: 370  EDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
            +  G+    EHY+C+VD L R+GR +EA+  +  +PF      ++ALLG C+   + E  
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388

Query: 429  EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
            +  A ++LALDP D S+YV+LSN  + + +WD+V++ R  MK K + + PG SWI++K+K
Sbjct: 1389 KRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNK 1448

Query: 489  VHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            VH+FV  DR+H     IY  +    ++IRE
Sbjct: 1449 VHLFVVDDRSHPQASLIYEKIEDLMKRIRE 1478



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 182/422 (43%), Gaps = 61/422 (14%)

Query: 51   CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK--QHHYE---EAIYLFSRMLLLNIR 105
            CGS      S  QVFD+  D ++V+  +I+  +A+     YE   E   LF  +      
Sbjct: 659  CGS----LCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFS 714

Query: 106  PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
             +  T   ++        + + + +H +A K+G + ++FV  A++++Y K   + +A  +
Sbjct: 715  ITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLL 774

Query: 166  FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR---------------------- 203
            F+     + V +  M+   ++    ++AL+ F    HR                      
Sbjct: 775  FDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF-HRSGFFPDFSNLHCVIGGVNSDVS 833

Query: 204  ------------------------NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                                    N+ +WN  +  +   G+   A++ F  +LR  +  +
Sbjct: 834  NNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHD 893

Query: 240  HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
              TL   + AA     L +G+  HA  +K      V V NSL++ Y+K G +  +   F 
Sbjct: 894  SVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFI 953

Query: 300  KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
               E ++++WN +I  YAQN    EAI  F  +  +G++P+  TL  +L AC+ TG   +
Sbjct: 954  NSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS-TGDEGE 1012

Query: 360  GYSYFSQAKLE--DPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
             ++  SQ  +     G++     +  ++DL S+ G+  EA EFL    +D  +  W A++
Sbjct: 1013 YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071

Query: 417  GG 418
             G
Sbjct: 1072 FG 1073



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 38/230 (16%)

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           S+ A+ DL LGK+ HA     G   + ++ + ++ +Y K  S+  A +VF+ + +     
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSD----- 674

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE-----EAVNLFIEM 231
                                     R++V+WN+++  Y+Q   +      E   LF  +
Sbjct: 675 --------------------------RDLVTWNSILAAYAQFADSSYENVLEGFRLF-GL 707

Query: 232 LRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           LRE G      TL   +        + + ++ H  AVK   +LD+FV  +L++ Y K G 
Sbjct: 708 LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGL 767

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           +  + L+FDK+ ER+ V WN ++  Y +N   +EA+ FF     +G  P+
Sbjct: 768 VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/450 (36%), Positives = 254/450 (56%), Gaps = 33/450 (7%)

Query: 70   DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
            D ++ S   I+  + K +   +A+  FS M  + I   E T  + I +S  L +L  GKQ
Sbjct: 1061 DFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ 1120

Query: 130  LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
            + A+A K+G  ++++V S +LD+YIK                          CG +    
Sbjct: 1121 IQAYAIKLGFNNDLWVSSGVLDMYIK--------------------------CGDMP--- 1151

Query: 190  FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
              +AL+LF E+   + V+W  MI GY + G  + A++++  M   G+ P+  T    I A
Sbjct: 1152 --NALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 250  AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            ++ + AL  GK  HA  VK    LD FVG SL+  Y KCGS++D+  VF K+  R +V W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 310  NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
            NA++ G AQ+G  +EA+  F  M+ NGI+P+ VT +G+L AC+H+GL  + Y YF  A  
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF-DAMF 1328

Query: 370  EDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
            +  G+    EHY+C+VD L R+GR +EA+  +  +PF      ++ALLG C+   + E  
Sbjct: 1329 KTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETA 1388

Query: 429  EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
            +  A ++LALDP D S+YV+LSN  + + +WD+V++ R  MK K + + PG SWI++K+K
Sbjct: 1389 KRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNK 1448

Query: 489  VHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            VH+FV  DR+H     IY  +    ++IRE
Sbjct: 1449 VHLFVVDDRSHPQASLIYEKIEDLMKRIRE 1478



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 182/422 (43%), Gaps = 61/422 (14%)

Query: 51   CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK--QHHYE---EAIYLFSRMLLLNIR 105
            CGS      S  QVFD+  D ++V+  +I+  +A+     YE   E   LF  +      
Sbjct: 659  CGS----LCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFS 714

Query: 106  PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
             +  T   ++        + + + +H +A K+G + ++FV  A++++Y K   + +A  +
Sbjct: 715  ITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLL 774

Query: 166  FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR---------------------- 203
            F+     + V +  M+   ++    ++AL+ F    HR                      
Sbjct: 775  FDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF-HRSGFXPDFSNLHCVIGGVNSDVS 833

Query: 204  ------------------------NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                                    N+ +WN  +  +   G+   A++ F  +LR  +  +
Sbjct: 834  NNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHD 893

Query: 240  HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
              TL   + AA     L +G+  HA  +K      V V NSL++ Y+K G +  +   F 
Sbjct: 894  SVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFI 953

Query: 300  KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
               E ++++WN +I  YAQN    EAI  F  +  +G++P+  TL  +L AC+ TG   +
Sbjct: 954  NSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS-TGDEGE 1012

Query: 360  GYSYFSQAKLE--DPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
             ++  SQ  +     G++     +  ++DL S+ G+  EA EFL    +D  +  W A++
Sbjct: 1013 YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071

Query: 417  GG 418
             G
Sbjct: 1072 FG 1073



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 38/230 (16%)

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           S+ A+ DL LGK+ HA     G   + ++ + ++ +Y K  S+  A +VF+ + +     
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSD----- 674

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE-----EAVNLFIEM 231
                                     R++V+WN+++  Y+Q   +      E   LF  +
Sbjct: 675 --------------------------RDLVTWNSILAAYAQFADSSYENVLEGFRLF-GL 707

Query: 232 LRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           LRE G      TL   +        + + ++ H  AVK   +LD+FV  +L++ Y K G 
Sbjct: 708 LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGL 767

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           +  + L+FDK+ ER+ V WN ++  Y +N   +EA+ FF     +G  P+
Sbjct: 768 VGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 252/461 (54%), Gaps = 35/461 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG   D      ++FDE+P+ N++S  TIIG       Y EA  LF  M         
Sbjct: 177 VKCGMMID----ARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGS 232

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             F ++I +S  L  +  G+QLH+ + K G+  +VFV  A++D+Y K  SIE+A  VF+ 
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFD- 291

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                         +MP +  V WN++I GY+  G +EEA++++
Sbjct: 292 ------------------------------QMPEKTTVGWNSIIAGYALHGYSEEALSMY 321

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM   G+  ++ T    I   A +A+L   K  HA  V+    LD+    +L+  Y+K 
Sbjct: 322 YEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKW 381

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +ED+  VFD +  +N+++WNA+I GY  +GRG EA+E FERM   G+ PN VT L +L
Sbjct: 382 GRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVL 441

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+++GL ++G+  F     +     +  HYACM++LL R G   EA   + D PF P 
Sbjct: 442 SACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPT 501

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           +  W ALL  C++H N ELG+FAA ++  + PE +S+YV+L N  + +G+ +  + + + 
Sbjct: 502 VNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQT 561

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +K +G+  +P CSWIEIK + + F++GD+ H  + EIY  L
Sbjct: 562 LKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKL 602



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 187/403 (46%), Gaps = 65/403 (16%)

Query: 89  YEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
           Y EA+ LF  +L LN        T+ +++ +   L+ +   K++  +    GL  + ++ 
Sbjct: 111 YHEALELFE-ILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLR 169

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           + +L +++K   + +A R+F++    N++S+ T+I GL+    + +A +LF  M      
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMM------ 223

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
            W      +S  G       +F+ M+R               A+A +  +  G+  H+C+
Sbjct: 224 -WQX----FSDAGS-----RMFVTMIR---------------ASAGLGLIFAGRQLHSCS 258

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           +K     DVFV  +LI  Y+KCGS+ED+  VFD++ E+  V WN++I GYA +G  EEA+
Sbjct: 259 LKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEAL 318

Query: 327 EFFERMRINGIRPNGVTLLGLLWAC-----------NHTGLVEKGYSYFSQAKLEDPGML 375
             +  MR +G++ +  T   ++  C            H GLV  G+     A        
Sbjct: 319 SMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVAN------- 371

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS-NVELGEFAARR 434
                  +VDL S+ GR ++AK     +P    I  W AL+ G   H   VE  E   R 
Sbjct: 372 -----TALVDLYSKWGRIEDAKHVFDMMPHKNVIS-WNALIAGYGNHGRGVEAVEMFERM 425

Query: 435 IL-ALDPEDVSSYVMLSNALSVAG----KWDNVSNIRREMKEK 472
           +   + P  V+   +LS A S +G     W+   ++ R+ K K
Sbjct: 426 LHEGMVPNHVTFLAVLS-ACSYSGLSDRGWEIFESMSRDHKIK 467



 Score = 45.4 bits (106), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 9/198 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V   S+  +      VFD +P  NV+S   +I  +       EA+ +F RML   + 
Sbjct: 372 TALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV 431

Query: 106 PSEFTFGSVIP--SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           P+  TF +V+   S + L D    +   + +    ++      + +++L  +   ++EA 
Sbjct: 432 PNHVTFLAVLSACSYSGLSDRGW-EIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 164 RVFEDT-HNPNVVSYTTMICGLLKRERFE----DALKLFQEMPHRNVVSWNAMIGGYSQT 218
            + +D    P V  +  ++      + FE     A KL+   P + + ++  ++  Y+ +
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEK-LSNYVVLLNIYNXS 549

Query: 219 GRNEEAVNLFIEMLREGL 236
           GR EEA  +   + R GL
Sbjct: 550 GRLEEAAAVIQTLKRRGL 567


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 158/453 (34%), Positives = 256/453 (56%), Gaps = 39/453 (8%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           PD  +++   ++  F +    + A+  F RM  + + P+  T    + +   + +L LGK
Sbjct: 462 PD--IITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGK 519

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++H +  +  ++ +  VGSA++ +Y    S+E A  VF                      
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVF---------------------- 557

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     E+  R+VV WN++I   +Q+GR+  A++L  EM    +  N  T+  A+ 
Sbjct: 558 ---------SELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALP 608

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A + +AAL  GK  H   ++       F+ NSLI  Y +CGS++ S  +FD + +R++V+
Sbjct: 609 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS 668

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           WN +I  Y  +G G +A+  F++ R  G++PN +T   LL AC+H+GL+E+G+ YF   K
Sbjct: 669 WNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMK 728

Query: 369 LE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
            E   DP +   E YACMVDLLSR+G+F E  EF+  +PF+P    W +LLG C+IH N 
Sbjct: 729 TEYAMDPAV---EQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 785

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           +L E+AAR +  L+P+   +YV+++N  S AG+W++ + IR  MKE+G+T+ PGCSWIE+
Sbjct: 786 DLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           K K+H FV GD +H + ++I A + S    I+E
Sbjct: 846 KRKLHSFVVGDTSHPLMEQISAKMESLYFDIKE 878



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 229/505 (45%), Gaps = 58/505 (11%)

Query: 14  LNKLSKLHSLAPNYLIETQKA--SVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           L K  KL++L   + +  Q     V   E    R   V C  ++       ++FD++ + 
Sbjct: 96  LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC--QTGCVEDARRMFDKMSER 153

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NV S T I+  +     YEE I LF  M+   +RP  F F  V  + + L++  +GK ++
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH--------------------- 170
            +   +G + N  V  +ILD++IK   ++ A R FE+                       
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 273

Query: 171 --------------NPNVVSYTTMICGLLKRERFEDALKLFQEMP-----HRNVVSWNAM 211
                          P+ V++  +I G  +  +FE+A K F EM        NVVSW A+
Sbjct: 274 KALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTAL 333

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           I G  Q G + EA+++F +M+ EG+ PN  T+  A+ A  N++ L  G+  H   +K   
Sbjct: 334 IAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEE 393

Query: 272 -KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
              D+ VGNSL+ +YAKC S+E +   F  + + ++V+WNA++ GYA  G  EEAIE   
Sbjct: 394 LDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLS 453

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            M+  GI P+ +T  GL+      G  +    +F   ++   GM    +   +   L+  
Sbjct: 454 EMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQ--RMHSMGM--DPNTTTISGALAAC 509

Query: 391 GRF------KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444
           G+       KE   ++     +   G   AL+    ++S  +  E A      L   DV 
Sbjct: 510 GQVRNLKLGKEIHGYVLRNHIELSTGVGSALI---SMYSGCDSLEVACSVFSELSTRDVV 566

Query: 445 SYVMLSNALSVAGKWDNVSNIRREM 469
            +  + +A + +G+  N  ++ REM
Sbjct: 567 VWNSIISACAQSGRSVNALDLLREM 591



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 214/419 (51%), Gaps = 24/419 (5%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDL-----NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +S  ++S +F    + F E+  L     NVVS T +I    +  +  EA+ +F +M+L  
Sbjct: 298 ISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEA 162
           ++P+  T  S + + T L  L  G+++H +  KV  L S++ VG++++D Y K  S+E A
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQT 218
            R F      ++VS+  M+ G   R   E+A++L  EM  +    ++++WN ++ G++Q 
Sbjct: 418 RRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQY 477

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G  + A+  F  M   G+ PN +T+  A+ A   +  L +GK  H   ++   +L   VG
Sbjct: 478 GDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVG 537

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           ++LIS Y+ C S+E +  VF +L+ R++V WN++I   AQ+GR   A++    M ++ + 
Sbjct: 538 SALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 597

Query: 339 PNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
            N VT++  L AC+    + +G   + +  +  L+    +       ++D+  R G  ++
Sbjct: 598 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI----LNSLIDMYGRCGSIQK 653

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIH----SNVELGEFAARRILALDPEDVSSYVMLS 450
           ++  ++DL     +  W  ++    +H      V L  F   R + L P  ++   +LS
Sbjct: 654 SRR-IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNL--FQQFRTMGLKPNHITFTNLLS 709



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 122/276 (44%), Gaps = 37/276 (13%)

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           A  L S M L N       + S++     L +L LG Q+HA     G+    F+GS +L+
Sbjct: 73  AAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLE 132

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTT---MICGLLKRERFEDALKLFQEMPHRNVVSW 208
           +Y +   +E+A R+F+     NV S+T    M CGL                        
Sbjct: 133 VYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGL------------------------ 168

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
                     G  EE + LF  M+ EG+ P+H   P    A + +    +GK  +   + 
Sbjct: 169 ----------GDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLS 218

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
              + +  V  S++  + KCG M+ +   F+++  +++  WN ++ GY   G  ++A++ 
Sbjct: 219 IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKC 278

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
              M+++G++P+ VT   ++     +G  E+   YF
Sbjct: 279 ISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 140/353 (39%), Gaps = 72/353 (20%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S  D       VF E+   +VV   +II   A+      A+ L   M L N+  + 
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  S +P+ + L  L  GK++H +  + GL +  F+ ++++D+Y +  SI+++ R+F+ 
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDL 660

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               ++VS                               WN MI  Y   G   +AVNLF
Sbjct: 661 MPQRDLVS-------------------------------WNVMISVYGMHGFGMDAVNLF 689

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +    GL PNH T    + A ++   +  G  +                  + + YA  
Sbjct: 690 QQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYF---------------KMMKTEYAMD 734

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            ++E    + D L+               + G+  E +EF E+M      PN      LL
Sbjct: 735 PAVEQYACMVDLLS---------------RAGQFNETLEFIEKMP---FEPNAAVWGSLL 776

Query: 349 WACN---HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
            AC    +  L E    Y  + + +  G     +Y  M ++ S +GR+++A +
Sbjct: 777 GACRIHCNPDLAEYAARYLFELEPQSSG-----NYVLMANIYSAAGRWEDAAK 824


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/515 (30%), Positives = 274/515 (53%), Gaps = 37/515 (7%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P +    +   S   + S    +FD   + NVV    +I  +   + Y EA+ +F  ML 
Sbjct: 71  PTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLS 130

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
               P  +TF  V+ + + L++L +G Q+H    KVGL +N+F+G+A++ +Y K   + E
Sbjct: 131 CAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLRE 190

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALK-------------------------- 195
           A +V +     +VVS+ +M+ G  +  +F+DAL+                          
Sbjct: 191 ARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCY 250

Query: 196 -----------LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                      +F+ M  +N++SWN MI  Y       EAV+LF++M   G+ P+  T+ 
Sbjct: 251 TSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIA 310

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + A  +++AL +G+  H    K   + ++ + N+L+  YAKCG +E++  VFDK+  R
Sbjct: 311 SLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLR 370

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           ++V+W +++  Y ++G+G +A+  F +M  +G  P+ +  + +L AC+HTGL+++G  YF
Sbjct: 371 DVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYF 430

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
                +   + + EH+ACMVDL  R+G  +EA  F+  +P +P    W ALL  C++HS 
Sbjct: 431 RMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSK 490

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           +++G  AA  +  L P+    YV+LSN  + AG W +V N+R  MK+ G+ +VPG S +E
Sbjct: 491 MDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVE 550

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +  +VH F+ GD+ H     IY  L     +++E 
Sbjct: 551 LNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKEL 585



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 24/158 (15%)

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           ++D  +   L+  Y+  G    +  +FD+  E+N+V +N +I  Y  N    EA+  F+ 
Sbjct: 68  RIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQV 127

Query: 332 MRINGIRPNGVTLLGLLWACN-----------HTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
           M      P+  T   +L AC+           H  +V+ G          D  +      
Sbjct: 128 MLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL---------DTNLFIGN-- 176

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             +V +  + G  +EA++ L  +P+   +  W +++ G
Sbjct: 177 -ALVAMYGKCGCLREARKVLDQMPYRDVVS-WNSMVAG 212


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/497 (35%), Positives = 272/497 (54%), Gaps = 40/497 (8%)

Query: 22  SLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS------VHQVFDEVPDLNVVS 75
           SL   Y    +    +K+   + + D VSC +    ++S        +VFD + + +VVS
Sbjct: 123 SLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVS 182

Query: 76  ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWAT 135
              +I  + +   YEEA+ LF  M+  N+RP E T  SV+ +      + LG+++H    
Sbjct: 183 WNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVD 242

Query: 136 KV-GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDAL 194
              G  S++ + +A + LY K   +E A+                               
Sbjct: 243 DHHGFGSSLKIVNAFIGLYSKCGDVEIAS------------------------------- 271

Query: 195 KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254
            LF+ +  ++VVSWN +IGGY+     +EA+ LF EMLR G  PN  T+   + A A++ 
Sbjct: 272 GLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 331

Query: 255 ALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           A+ +G+  H    K L  +     +  SLI  YAKCG +E +  VF+ +  +++ +WNA+
Sbjct: 332 AIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAM 391

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           I G+A +GR   A + F RMR NGI P+ +TL+GLL AC+H+GL++ G   F     +  
Sbjct: 392 IFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYN 451

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
              K EHY CM+DLL  +G FKEA+E ++ +P +P    W +LL  C++H N+EL E  A
Sbjct: 452 ITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFA 511

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVF 492
           ++++ ++PE+  SYV+LSN  + AG+W++V+ IR  +  KGM +VPGCS IEI S VH F
Sbjct: 512 QKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEF 571

Query: 493 VTGDRNHHMNDEIYAVL 509
           + GD+ H  + EIY +L
Sbjct: 572 IIGDKLHPQSREIYRML 588



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 206/405 (50%), Gaps = 14/405 (3%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+   + N++   T++   A        + ++ RM+     P+ +TF  ++ S    + 
Sbjct: 39  VFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKT 98

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q+HA   K+G + + +  ++++ +Y +   +E+A +VF+ +   +VVS T +I G
Sbjct: 99  FEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITG 158

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
              R     A K+F  +  R+VVSWNAMI GY +    EEA+ LF EM+R  + P+  TL
Sbjct: 159 YASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTL 218

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              + A A   ++ +G+  H       G    + + N+ I  Y+KCG +E +  +F+ L+
Sbjct: 219 VSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLS 278

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
            +++V+WN +I GY      +EA+  F+ M  +G  PN VT+L +L AC H G ++ G  
Sbjct: 279 CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRW 338

Query: 361 -YSYFSQ--AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            + Y  +    + +   L+      ++D+ ++ G   EA   +++      +  W A++ 
Sbjct: 339 IHVYIDKRLKGVTNGSALRTS----LIDMYAKCGDI-EAAHQVFNSMMHKSLSSWNAMIF 393

Query: 418 GCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           G  +H  +N     F+  R   ++P+D++   +LS A S +G  D
Sbjct: 394 GFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLS-ACSHSGLLD 437



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 31/199 (15%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+ +F+     N++ WN M+ G + +      + +++ M+  G VPN  T P  + + A 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED------------------- 293
                 G+  HA  +K   +LD +   SLIS YA+ G +ED                   
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 294 ------------SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                       +  VFD +TER++V+WNA+I GY +N   EEA+E F+ M    +RP+ 
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 342 VTLLGLLWACNHTGLVEKG 360
            TL+ +L AC  +G +E G
Sbjct: 216 GTLVSVLSACAQSGSIELG 234


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 249/442 (56%), Gaps = 36/442 (8%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  +++    +EA+ L+ +M    I    +T+ SV  +  A + L  G+ +H    K G
Sbjct: 342 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 401

Query: 139 LQSNVF-VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           L   V  V +AI D Y K                          CG L     ED  K+F
Sbjct: 402 LDLMVVSVNNAIADAYSK--------------------------CGFL-----EDVRKVF 430

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
             M  R++VSW  ++  YSQ+   EEA+  F  M  EG  PN  T    +I+ A++  L 
Sbjct: 431 DRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLE 490

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
            G+  H    K     +  + ++LI  YAKCGS+ ++  VFDK++  +IV+W A+I GYA
Sbjct: 491 YGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYA 550

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
           Q+G  E+A++ F RM ++GI+ N VTLL +L+AC+H G+VE+G  YF Q  +ED   + P
Sbjct: 551 QHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ--MEDGYGVVP 608

Query: 378 --EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
             EHYAC++DLL R GR  +A EF+  +P +P    W+ LLGGC++H NVELGE AAR+I
Sbjct: 609 EMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKI 668

Query: 436 LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG 495
           L++ PE  ++YV+LSN     G +++  ++R  MK++G+ + PG SWI +K +VH F +G
Sbjct: 669 LSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSG 728

Query: 496 DRNHHMNDEIYAVLRSCTEQIR 517
           D+ H    EIY  L    E+I+
Sbjct: 729 DQQHPQKKEIYVKLEELREKIK 750



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 186/369 (50%), Gaps = 38/369 (10%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           + VF+ + + N VS   +I        + EA  LF RM      P+ +T  SV  +   L
Sbjct: 222 YWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKL 281

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D+N+GK++   A+++G++ NV VG+A++D+Y K  S+ +A  VF DT+  N        
Sbjct: 282 VDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF-DTNFIN-------- 332

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG+                P      WNAMI GYSQ+G ++EA+ L+++M + G+  +  
Sbjct: 333 CGV--------------NTP------WNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 372

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           T      A A   +L  G+  H   +K  L  + V V N++   Y+KCG +ED   VFD+
Sbjct: 373 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 432

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ER+IV+W  ++  Y+Q+  GEEA+  F  MR  G  PN  T   +L +C     +E G
Sbjct: 433 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 492

Query: 361 ---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
              +    +A L+    ++    + ++D+ ++ G   EA + ++D   +P I  W A++ 
Sbjct: 493 RQVHGLLCKAGLDTEKCIE----SALIDMYAKCGSITEAGK-VFDKISNPDIVSWTAIIS 547

Query: 418 GCQIHSNVE 426
           G   H  VE
Sbjct: 548 GYAQHGLVE 556



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 140/290 (48%), Gaps = 33/290 (11%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+  +F +   VFDE+P  NV S T +I    +   + +    F  ML   I P +F + 
Sbjct: 112 SKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYS 171

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           ++I S   L+ L LGK +HA     G  +++FV +++L++Y KL SIE++  VF      
Sbjct: 172 AIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEH 231

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N VS+                               NAMI G +  G + EA +LF+ M 
Sbjct: 232 NQVSW-------------------------------NAMISGCTSNGLHLEAFDLFVRMK 260

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
                PN  TL     A   +  + MGK    CA +   + +V VG +LI  Y+KCGS+ 
Sbjct: 261 NGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLH 320

Query: 293 DSLLVFD-KLTERNIVT-WNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           D+  VFD       + T WNA+I GY+Q+G  +EA+E + +M  NGI  +
Sbjct: 321 DARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSD 370



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 10/238 (4%)

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K   F  A  +F EMP RNV SW  MI G ++ G   +    F EML  G++P+      
Sbjct: 113 KCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSA 172

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            I +   + +L +GK  HA  V       +FV  SL++ YAK GS+EDS  VF+ +TE N
Sbjct: 173 IIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHN 232

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YS 362
            V+WNA+I G   NG   EA + F RM+     PN  TL+ +  A      V  G    +
Sbjct: 233 QVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQN 292

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF-DPGIGF-WKALLGG 418
             S+  +E   ++       ++D+ S+ G   +A+  ++D  F + G+   W A++ G
Sbjct: 293 CASELGIEGNVLVG----TALIDMYSKCGSLHDARS-VFDTNFINCGVNTPWNAMISG 345



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 156/346 (45%), Gaps = 50/346 (14%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           AI      CG   D    V +VFD + + ++VS TT++  +++    EEA+  F  M   
Sbjct: 412 AIADAYSKCGFLED----VRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREE 467

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
              P++FTF SV+ S  +L  L  G+Q+H    K GL +   + SA++D+Y K  SI EA
Sbjct: 468 GFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEA 527

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQT 218
            +VF+   NP++VS+T +I G  +    EDAL+LF+ M       N V+   ++   S  
Sbjct: 528 GKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHG 587

Query: 219 GRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
           G  EE +  F +M    G+VP                        +AC +  LG++    
Sbjct: 588 GMVEEGLFYFQQMEDGYGVVPE--------------------MEHYACIIDLLGRV---- 623

Query: 278 GNSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
                      G ++D++    K+  E N + W  ++ G   +G  E   E   R +I  
Sbjct: 624 -----------GRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELG-EIAAR-KILS 670

Query: 337 IRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA 381
           IRP    T + L      TG  E G S   +  ++D G+ K   Y+
Sbjct: 671 IRPEYSATYVLLSNTYIETGSYEDGLSL--RNVMKDQGVKKEPGYS 714



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 259 GKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
            K+ H   +K  F  K  + + N     Y+KC     +  VFD++ +RN+ +W  +I G 
Sbjct: 83  AKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGS 142

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376
            ++G   +  +FF  M  +GI P+      ++ +C     +E G    +Q  +       
Sbjct: 143 TEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFA--- 199

Query: 377 PEHYACMVDLLSRSGRFK--EAKEFLYDLPFDPGIGFWKALLGGC 419
             H      LL+   +    E   +++++  +     W A++ GC
Sbjct: 200 -THIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGC 243


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/526 (32%), Positives = 275/526 (52%), Gaps = 63/526 (11%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + +    +FD  PD  V     I   +     Y E ++LF +M  +++RP+ FTF  V+ 
Sbjct: 72  QMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLK 131

Query: 117 S----------------------------STALEDLNLG----------------KQLHA 132
           S                            +T L D+  G                + + A
Sbjct: 132 SCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVA 191

Query: 133 WATKVG---LQSNVFVGSAILDL---------------YIKLSSIEEATRVFEDTHNPNV 174
           W + +    L + V +   + DL               YI++  ++ A ++F+     + 
Sbjct: 192 WTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDT 251

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           +S+ TM+ G       E   +LF+EMP RNV SWN +IGGY+  G   E +  F  ML +
Sbjct: 252 MSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLID 311

Query: 235 GLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           GLV PN +TL   + A A + AL +GK  H  A     K  ++VGN+LI  Y+KCG +E+
Sbjct: 312 GLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIEN 371

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           ++ VF+ +  ++++TWN++ICG A +G G +A+  F +M+ING +P+G+T +G+L +C H
Sbjct: 372 AMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTH 431

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLVE+G SYF+    E     + EHY CMVDL  R+G    A EF+  +P +     W 
Sbjct: 432 LGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWA 491

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALLG C+I+ N++L E A ++++ L+P++ ++YV+LSN     G+W +V+ ++  M++ G
Sbjct: 492 ALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTG 551

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
             ++PGCS IE+   V  F + D  H  + EIY VL+   + +R F
Sbjct: 552 SKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSF 597



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/366 (19%), Positives = 141/366 (38%), Gaps = 79/366 (21%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +++ A     G Q N +V   ++  ++ L  +  A  +F+   +P V  +  +  G    
Sbjct: 42  QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHN 101

Query: 188 ERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             + + + LF +M   +V     ++  ++   ++ G   E   +  E+++ GL  N    
Sbjct: 102 AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQ--- 158

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKL------------------------------ 273
               +A   I     G++  +    F+G L                              
Sbjct: 159 ---FVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLA 215

Query: 274 ---DVFVGNSLISFYAKCGSMEDSLLVFD------------------------------- 299
              DV + N ++S Y + G M+ +  +FD                               
Sbjct: 216 PERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFE 275

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVE 358
           ++ ERN+ +WN +I GYA NG   E +  F+RM I+G + PN  TL+ +L AC   G ++
Sbjct: 276 EMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALD 335

Query: 359 KG-YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            G + +   A +   G +   +   ++D+ S+ G  + A E    +     I  W +++ 
Sbjct: 336 LGKWVHVYAATIGFKGSIYVGN--ALIDMYSKCGLIENAMEVFESMDLKDLIT-WNSMIC 392

Query: 418 GCQIHS 423
           G   H 
Sbjct: 393 GLATHG 398



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 12/185 (6%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           +V  ++++ +     M  +  +FD   +  +  WNA+  GY  N    E +  F +M+  
Sbjct: 58  YVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSM 117

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRF 393
            +RPN  T   +L +C   G   +G     +      G L+   +    ++D+ S  GR 
Sbjct: 118 DVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVI---KGGLEGNQFVATTLIDVYS-GGRA 173

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSY-VMLSN 451
             +   L+    +  I  W +++ G  + + V L    ARR+  L PE DV  + +M+S 
Sbjct: 174 IGSAYKLFVGMLERNIVAWTSMISGYILCNRVAL----ARRLFDLAPERDVVLWNIMVSG 229

Query: 452 ALSVA 456
            + + 
Sbjct: 230 YIEIG 234


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 256/446 (57%), Gaps = 8/446 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E ++     Q F  +P  N  S   +I    +    EEA  LF  M   N+     ++ +
Sbjct: 49  EDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNV----ISYTA 104

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++     + ++   + L         Q NV   + ++  Y++    +EA  +FE   + N
Sbjct: 105 MVDGYAKIGEIEQARALFNCMP----QKNVVSWTVMISGYVENGKFDEAENLFEQMPDKN 160

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           +V+ T MI G  K  + + A  LF ++P R++ SWNAMI GY+Q G  EEA+ L  +ML+
Sbjct: 161 IVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLK 220

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+ P+HSTL   + A +++A+L  G+  H   +K   +  + + N+LI+ Y KCGS+ D
Sbjct: 221 MGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILD 280

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           S L F ++   ++V+WNA+I  +A++G  + A+  F  MR N + P+G+T L LL AC H
Sbjct: 281 SELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGH 340

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            G V +  ++F+        + +PEH+AC+VD+LSR G+ ++A + + ++PF+   G W 
Sbjct: 341 AGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWG 400

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALL  C +H NV+LGE AA++I+ L+P++  +YV+LSN  + AG W  V+ +R  M+E+G
Sbjct: 401 ALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQG 460

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNH 499
           + + P  SW+EI +KVH F+  D +H
Sbjct: 461 VKKQPAYSWMEIDNKVHFFLGDDASH 486



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 31/241 (12%)

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           ++I+  Y K    +E+ R+F      NVVS+ +MI G ++ ER ++A + FQ MP RN  
Sbjct: 10  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTA 69

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC- 265
           SWNAMI G  +  R EEA  LF EM R  ++    +    +   A I  +   ++   C 
Sbjct: 70  SWNAMISGLVRYDRVEEASRLFEEMPRRNVI----SYTAMVDGYAKIGEIEQARALFNCM 125

Query: 266 ----AVKFL---------GKLD-------------VFVGNSLISFYAKCGSMEDSLLVFD 299
                V +          GK D             +    ++I+ Y K G  + + ++FD
Sbjct: 126 PQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFD 185

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++  R++ +WNA+I GYAQNG GEEA++   +M   G++P+  TL+ +L AC+    +++
Sbjct: 186 QIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQE 245

Query: 360 G 360
           G
Sbjct: 246 G 246



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 39/196 (19%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS------------------ 241
           MPHR+ VSWN++I GY + G  +E+  LF      GL+P  +                  
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLF------GLMPTKNVVSWNSMIAGCIEDERID 54

Query: 242 -------TLPCAIIAAAN--IAALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKCGS 290
                   +P    A+ N  I+ L         +  F  + + +V    +++  YAK G 
Sbjct: 55  EAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGE 114

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E +  +F+ + ++N+V+W  +I GY +NG+ +EA   FE+M    I    V +  ++  
Sbjct: 115 IEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNI----VAMTAMITG 170

Query: 351 CNHTGLVEKGYSYFSQ 366
               G  +K    F Q
Sbjct: 171 YCKEGKTDKAKILFDQ 186


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 257/453 (56%), Gaps = 38/453 (8%)

Query: 57  KFSSVHQVFD--EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           +  S   VF+   +P+  +VS T I+  +A+     EA+ +FS M  ++++P      SV
Sbjct: 169 RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSV 228

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + + T L+DL  G+ +HA   K+GL+          DL I L+++               
Sbjct: 229 LNAFTCLQDLKQGRSIHASVVKMGLEIEP-------DLLISLNTMYAK------------ 269

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                  CG +   +      LF +M   N++ WNAMI GY++ G   EA+++F EM+ +
Sbjct: 270 -------CGQVATAKI-----LFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
            + P+  ++  AI A A + +L   +S +    +   + DVF+ ++LI  +AKCGS+E +
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
            LVFD+  +R++V W+A+I GY  +GR  EAI  +  M   G+ PN VT LGLL ACNH+
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437

Query: 355 GLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           G+V +G+ +F+   L     + P  +HYAC++DLL R+G   +A E +  +P  PG+  W
Sbjct: 438 GMVREGWWFFN---LMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALL  C+ H +VELGE+AA+++ ++DP +   YV LSN  + A  WD V+ +R  MKEK
Sbjct: 495 GALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEK 554

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           G+ +  GCSW+E++ ++  F  GD++H   +EI
Sbjct: 555 GLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEI 587



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 190/387 (49%), Gaps = 39/387 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD++P   +     II  +++ +H+++A+ ++S M L  + P  FTF  ++ + + L 
Sbjct: 74  QVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLS 133

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L +G+ +HA   ++G  ++VFV + ++ LY K   +  A  VFE               
Sbjct: 134 HLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFE--------------- 178

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL               +P R +VSW A++  Y+Q G   EA+ +F  M +  + P+   
Sbjct: 179 GL--------------PLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVA 224

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A   +  L  G+S HA  VK   +++  +  SL + YAKCG +  + ++FDK+ 
Sbjct: 225 LVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK 284

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
             N++ WNA+I GYA+NG   EAI+ F  M    +RP+ +++   + AC   G +E+   
Sbjct: 285 SPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARS 344

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            Y Y  ++   D   +     + ++D+ ++ G  + A+  ++D   D  +  W A++ G 
Sbjct: 345 MYEYVGRSDYRDDVFIS----SALIDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMIVGY 399

Query: 420 QIHSNVE--LGEFAARRILALDPEDVS 444
            +H      +  + A     + P DV+
Sbjct: 400 GLHGRAREAISLYRAMERGGVHPNDVT 426



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 43/333 (12%)

Query: 91  EAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148
           EA  L S +L  N  I    F + S+I S+T    L   KQ+HA    +GLQ + F+ + 
Sbjct: 3   EASCLASPLLYTNSGIHSDSF-YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITK 58

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           ++        I  A +VF+D   P +  +  +I G  +   F+DAL ++  M        
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNM-------- 110

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
                   Q  R               + P+  T P  + A + ++ L MG+  HA   +
Sbjct: 111 --------QLAR---------------VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFD--KLTERNIVTWNAVICGYAQNGRGEEAI 326
                DVFV N LI+ YAKC  +  +  VF+   L ER IV+W A++  YAQNG   EA+
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVD 385
           E F  MR   ++P+ V L+ +L A      +++G S    A +   G+ ++P+    +  
Sbjct: 208 EIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSI--HASVVKMGLEIEPDLLISLNT 265

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           + ++ G+   AK  L+D    P +  W A++ G
Sbjct: 266 MYAKCGQVATAK-ILFDKMKSPNLILWNAMISG 297


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 256/446 (57%), Gaps = 8/446 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E ++     Q F  +P  N  S   +I    +    EEA  LF  M   N+     ++ +
Sbjct: 121 EDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNV----ISYTA 176

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++     + ++   + L         Q NV   + ++  Y++    +EA  +FE   + N
Sbjct: 177 MVDGYAKIGEIEQARALF----NCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKN 232

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           +V+ T MI G  K  + + A  LF ++P R++ SWNAMI GY+Q G  EEA+ L  +ML+
Sbjct: 233 IVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLK 292

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+ P+HSTL   + A +++A+L  G+  H   +K   +  + + N+LI+ Y KCGS+ D
Sbjct: 293 MGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILD 352

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           S L F ++   ++V+WNA+I  +A++G  + A+  F  MR N + P+G+T L LL AC H
Sbjct: 353 SELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGH 412

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            G V +  ++F+        + +PEH+AC+VD+LSR G+ ++A + + ++PF+   G W 
Sbjct: 413 AGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWG 472

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALL  C +H NV+LGE AA++I+ L+P++  +YV+LSN  + AG W  V+ +R  M+E+G
Sbjct: 473 ALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQG 532

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNH 499
           + + P  SW+EI +KVH F+  D +H
Sbjct: 533 VKKQPAYSWMEIDNKVHFFLGDDASH 558



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 160/330 (48%), Gaps = 53/330 (16%)

Query: 35  SVQKLETPAIRTDSVSCG--SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA 92
           S++   T  +   +V  G  + +    +  Q+FDE+P  + VS  +II  + K   ++E+
Sbjct: 38  SIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDES 97

Query: 93  IYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL 152
             LF  M                P+          K + +W        N  +   I D 
Sbjct: 98  KRLFGLM----------------PT----------KNVVSW--------NSMIAGCIED- 122

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
                 I+EA + F+     N  S+  MI GL++ +R E+A +LF+EMP RNV+S+ AM+
Sbjct: 123 ----ERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMV 178

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--L 270
            GY++ G  E+A  LF        +P  + +   ++ +  +     GK F      F  +
Sbjct: 179 DGYAKIGEIEQARALF------NCMPQKNVVSWTVMISGYVEN---GK-FDEAENLFEQM 228

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
              ++    ++I+ Y K G  + + ++FD++  R++ +WNA+I GYAQNG GEEA++   
Sbjct: 229 PDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHS 288

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +M   G++P+  TL+ +L AC+    +++G
Sbjct: 289 QMLKMGMQPDHSTLISVLTACSSLASLQEG 318


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 252/448 (56%), Gaps = 37/448 (8%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS  ++I    ++   E+A+  F +M   +++  E+T  SV+ S  +++ +     +H  
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             K G ++   V +A++D+Y K                               + + + A
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAK-------------------------------QGKLDCA 95

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
           + +F +M  ++VVSW +++ GYS  G  EEA+ LF +M   G+ P+   +   + A A +
Sbjct: 96  IMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAEL 155

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
             +  G+  HA  VK   +  + V NSL++ YAKCGS+ D+   FD +  R++++W A+I
Sbjct: 156 TVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALI 215

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF---SQAKLE 370
            GYAQNGRG+ +++F+++M   G +P+ +T +GLL+AC+H GL+  G +YF    +    
Sbjct: 216 VGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGI 275

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
            PG   PEHYACM+DLL RSG+  EAK  L  +   P    WKALL  C++H  +ELGE 
Sbjct: 276 KPG---PEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEM 332

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
           AA+ +  L+P +   YVMLSN  S AGKW++ + IRR M+ +G+ + PG SWIE  SKV 
Sbjct: 333 AAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVS 392

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            F++ DRNH + +EIY+ +      I+E
Sbjct: 393 TFMSEDRNHPLRNEIYSKIDEIIMLIKE 420



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 110/236 (46%), Gaps = 47/236 (19%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++  K      VF ++ D +VVS T+++  ++    YEEAI LF +M +  + P +    
Sbjct: 87  AKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVA 146

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +   L  ++ G+Q+HA   K GL+S++ V ++++ +Y K  SI +A R F++    
Sbjct: 147 SVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTR 206

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +V+S+T +I G                               Y+Q GR + ++  + +M+
Sbjct: 207 DVISWTALIVG-------------------------------YAQNGRGKHSLQFYDQMI 235

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSF----------------HACAVKFLGK 272
             G  P++ T    + A ++   LG G+++                +AC +  LG+
Sbjct: 236 ATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGR 291


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/508 (32%), Positives = 277/508 (54%), Gaps = 41/508 (8%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+S     +  VFD++   + VS  T+I  F+      +A+  F RM       ++
Sbjct: 96  LSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTD 155

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +T  SV+ + + L D+  GKQ+H       L  +VFV +A+ ++Y K  ++++A  +F+ 
Sbjct: 156 YTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDR 215

Query: 169 THNPNVVSYTTMICGLLKRER-----------------------------------FEDA 193
             N NVVS+ +MI G L+  +                                    ++A
Sbjct: 216 MVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEA 275

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
            K F+E+  ++ V W  M+ G +Q G+ E+A+ LF EML E + P++ T+   + + A +
Sbjct: 276 CKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARL 335

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           A+L  G++ H  AV F    D+ V ++L+  Y+KCG   D+ +VF ++  RN+++WN++I
Sbjct: 336 ASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMI 395

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF-SQAKLEDP 372
            GYAQNG+  EA+  +E M    ++P+ +T +G+L AC H GLVE+G  YF S +K+   
Sbjct: 396 LGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIH-- 453

Query: 373 GMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
           GM  P  +HY+CM++LL R+G   +A + +  + F+P    W  LL  C+I+ +V  GE 
Sbjct: 454 GM-NPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEM 512

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
           AAR +  LDP +   Y+MLSN  +  G+W +V+ +R  MK   + +    SWIEI ++VH
Sbjct: 513 AARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVH 572

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            FV  DR H   ++IY  L    ++++E
Sbjct: 573 KFVAEDRTHSETEQIYEELNRLIKKLQE 600



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 122/231 (52%)

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           ++ F+ + +L LY K  ++ +A  +F+     +V S+  M+    K    ED   +F +M
Sbjct: 56  TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
              + VS+N +I G+S  G + +A+  F+ M  EG      T    + A + +  +  GK
Sbjct: 116 SVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGK 175

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
             H   V       VFV N+L + YAKCG+++ +  +FD++  +N+V+WN++I GY QNG
Sbjct: 176 QIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNG 235

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           + E   + F  M+ +G+ P+ VT+  +L A    G +++    F + K +D
Sbjct: 236 QPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKD 286


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/450 (35%), Positives = 254/450 (56%), Gaps = 1/450 (0%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           SVS  S +      H +F  +P+ N     TII  +A     E A+ +F +ML  ++ P 
Sbjct: 48  SVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPD 107

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           ++TF   + S  +   +  G+Q+H    K GL  ++F+ + ++ LY     IE+A  + +
Sbjct: 108 KYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLD 167

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDA-LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                +VVS+  ++    +R   E A  ++F E P +NVVSWNAMI GYS  GR  E + 
Sbjct: 168 RMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLV 227

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF +M   G+ P++ TL   + A A++ AL  G+  HA   K    +D FV  +L+  Y+
Sbjct: 228 LFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYS 287

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCGS+E +L VF+    ++I TWN++I G + +G G+ A++ F  M + G +PN VT + 
Sbjct: 288 KCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVC 347

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           +L AC+  GL+++G   F+            EHY CMVDLL R G  +EA+E +  +P  
Sbjct: 348 VLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQK 407

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
                W++LLG C+ H NVEL E  A+++L L P++ SS+V LSN  +  G+W +V  +R
Sbjct: 408 EASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVR 467

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGD 496
           ++M+ +G+ + PGCS IE+   V+ F+ G+
Sbjct: 468 QKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 497


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 264/459 (57%), Gaps = 7/459 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM--LLLNIRPSEFTFGSVIPSSTA 120
           ++FD      VV+   ++  + +   YEE+  LF  M      + P+  T   ++ + + 
Sbjct: 192 KIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSK 251

Query: 121 LEDLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           L+DL  GK ++    K G+ + N+ + +A++D++     ++ A  VF++    +V+S+T+
Sbjct: 252 LKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTS 311

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           ++ G     R + A K F +MP R+ VSW AMI GY +  R +E + LF +M    + P+
Sbjct: 312 IVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPD 371

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T+   + A A++ AL +G+       K   K D F+GN+LI  Y KCG++E +  +F+
Sbjct: 372 EFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFN 431

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ +++  TW A+I G A NG GEEA+  F  M    + P+ +T +G++ AC H GLV K
Sbjct: 432 EMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAK 491

Query: 360 GYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           G  +FS   ++    +KP   HY CMVDLL R+G  KEA E + ++P  P    W +LLG
Sbjct: 492 GKHFFSNMAVQHG--IKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLG 549

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H NV+L E AA  IL L+PE+ + YV+L N  +   KW N+ N+R+ M E+G+ ++
Sbjct: 550 ACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKI 609

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           PGCS +E+   V+ FV GD++H  + EIYA L +  + +
Sbjct: 610 PGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDL 648



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 190/408 (46%), Gaps = 24/408 (5%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           C  ES       +VFDE+P  +V    T+I  +++ +  E  + L+  ML+ NI+P  FT
Sbjct: 78  CTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFT 137

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           F  ++   T    L  GK L   A   G L SN+FV    + L+     +  A ++F+  
Sbjct: 138 FPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMG 197

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR------NVVSWNAMIGGYSQTGRNEE 223
               VV++  ++ G  + +R+E++ +LF EM  +      N V+   M+   S+      
Sbjct: 198 DGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVG 257

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKLDVFVGNSL 281
              ++ + ++EG+V      P  I+  A I          A    F  +   DV    S+
Sbjct: 258 GKCIYNKYIKEGIVE-----PNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSI 312

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           ++ +A    ++ +   FD++ ER+ V+W A+I GY +  R +E +  F  M+++ ++P+ 
Sbjct: 313 VTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDE 372

Query: 342 VTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
            T++ +L AC H G +E G    +Y  + K+++   +       ++D+  + G  ++AK+
Sbjct: 373 FTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIG----NALIDMYFKCGNVEKAKK 428

Query: 399 FLYDLPFDPGIGFWKALLGGC--QIHSNVELGEFAARRILALDPEDVS 444
              ++        W A++ G     H    L  F+     ++ P++++
Sbjct: 429 IFNEMQKKDKFT-WTAMIVGLANNGHGEEALTMFSYMLEASVTPDEIT 475



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 130/286 (45%), Gaps = 17/286 (5%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A K+F E+P  +V  WN MI GYS+   +E  V+L+  ML   + P+  T P  +     
Sbjct: 88  ARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTK 147

Query: 253 IAALGMGKSF--HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
             AL  GK    HA    FL   ++FV    I  ++ CG +  +  +FD      +VTWN
Sbjct: 148 DMALKYGKVLLNHAVIHGFLDS-NLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWN 206

Query: 311 AVICGYAQNGRGEEAIEFFERM--RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
            V+ GY +  R EE+   F  M  +   + PN VTL+ +L AC+    +  G   Y+ + 
Sbjct: 207 VVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYI 266

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
           +  + +P ++       ++D+ +  G    A+    ++     I  W +++ G      +
Sbjct: 267 KEGIVEPNLILEN---ALIDMFASCGEMDAARGVFDEMKTRDVIS-WTSIVTGFANTCRI 322

Query: 426 ELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMK 470
           +L    AR+     PE D  S+  + +      ++  V  + R+M+
Sbjct: 323 DL----ARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQ 364


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 173/516 (33%), Positives = 284/516 (55%), Gaps = 16/516 (3%)

Query: 9   RSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEV 68
           ++  S+  L K+H+     LI+T  A     +T A       C S +   +  + VF ++
Sbjct: 4   KNCTSMKDLQKIHA----QLIKTGLAK----DTIAASRVLAFCTSPAGDINYAYLVFTQI 55

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNL 126
            + N+    TII  F++      AI LF  M+  +   +P   T+ SV  +   L   + 
Sbjct: 56  RNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHE 115

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G QLH    K+GL+++ F+ + IL++Y+    + EA R+F+     +VV++ TMI GL K
Sbjct: 116 GAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAK 175

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
               + + +LF +M  RN VSWN+MI GY + GR  EA+ LF  M  EG+ P+  T+   
Sbjct: 176 CGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSL 235

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A A + AL  G+  H   VK    L+  V  ++I  Y+KCGS++ +L VF    ++ +
Sbjct: 236 LNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGL 295

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF-- 364
             WN++I G A +GRG EA+  F ++  + ++P+ V+ +G+L ACNH G+V++   YF  
Sbjct: 296 SCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLL 355

Query: 365 -SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            S+    +P +   +HY+CMVD+L R+G  +EA+E +  +P +P    W +LL  C+ + 
Sbjct: 356 MSETYKIEPSI---KHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYG 412

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N+E+ + AA+R+  LDP + SS+++LSN  +    ++     R  +KEK M + PGCS I
Sbjct: 413 NIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLI 472

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           E+  +VH FV G R H  + +IY  L      ++E 
Sbjct: 473 EVNGEVHEFVAGGRLHPRSKDIYHALDDLGLTLKEM 508


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/462 (35%), Positives = 265/462 (57%), Gaps = 12/462 (2%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +   Q+FD++PD N+    ++   +A+   Y E   +F  M   N+      + S+I   
Sbjct: 2   TYARQLFDQIPDPNIALWNSMFRGYAQSESYRE---IFCEMFERNV----VAWTSMINGY 54

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
               DL   ++L   A     + +V + + ++  YI+   + EA ++F +  N +V+ + 
Sbjct: 55  ILSADLVSARRLFDLAP----ERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWN 110

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           T++ G       E    LF+EMP RN+ SWNA+IGGY+  G   E +  F  ML E  VP
Sbjct: 111 TVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVP 170

Query: 239 -NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            N +TL   + A A + AL +GK  H  A     K +V+VGN+L+  YAKCG +E+++ V
Sbjct: 171 PNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISV 230

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F  +  +++++WN +I G A + RG +A+  F +M+  G +P+G+T +G+L AC H GLV
Sbjct: 231 FRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLV 290

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           E G++YF     +   M + EHY CMVD+L+R+GR ++A  F+  +P +     W  LLG
Sbjct: 291 EDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLG 350

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C+I+ NVEL E A +R++ L+P++ ++YVMLSN    AG+W++V+ ++  M++ G  ++
Sbjct: 351 ACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKL 410

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           PGCS IE+   V  F + D  H   +EIY VLR   + +R F
Sbjct: 411 PGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSF 452


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/524 (33%), Positives = 278/524 (53%), Gaps = 32/524 (6%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C ++    + S+LH+      +++ +A   +L+            + S +      
Sbjct: 30  LLAACSTA---RRASELHAAVVRKGLDSDRAVAFRLQRAY---------AASGRLDHSLT 77

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +     D   +  T+ I   + +  +   + L S ML   + P+  T  + +P   A   
Sbjct: 78  LLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLP---ACRG 134

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+LG+ LHA+A K+ L  + +V +A+L +Y +      A  +F++  +P+VVS T M+  
Sbjct: 135 LSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTC 194

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                  +DA +LF  +P ++ + WNAMI GY+Q G+  EA+ LF  MLR    P+  T+
Sbjct: 195 YANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTV 254

Query: 244 PCAIIAAANIAALGMGKSFHA------CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
              + A A +  +  GK  H+      C      +L+V V  +L+  Y KCGS+ED++ V
Sbjct: 255 VLVLSAVAQLGTVESGKWLHSYVKNSRCV-----QLNVRVATALVDMYCKCGSLEDAVAV 309

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F  +  ++IV WNA+I GYA +G   +A+E F ++R  G+ P  +T +GLL AC+H+GLV
Sbjct: 310 FHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLV 369

Query: 358 EKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           E+G S+F   + E   DP   K EHY CMVDLL R+G  +EA   +  L   P    W +
Sbjct: 370 EEGRSFFQSMEHEYGIDP---KIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVS 426

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LL  C++H N+ LG+  A  ++A    +   Y++LSN  +  GKW+ V+ +R  MK  G+
Sbjct: 427 LLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGI 486

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            + PGCS IEI  KV+ FV GD +H   DEIYA+L      ++E
Sbjct: 487 QKEPGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKE 530


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 248/456 (54%), Gaps = 36/456 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVF+E    +  + +++I  FA+      AI  F RM+  N+ P +  F S   +   L 
Sbjct: 110 QVFEESERKSSTTWSSVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILG 169

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             ++GK +H    K G   +VFVGS+++D+Y K   I+EA  VF+               
Sbjct: 170 RCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFD--------------- 214

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                           EMPHRNVVSW+ MI GY+Q G +EEA+ LF E L EGL  N  T
Sbjct: 215 ----------------EMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFT 258

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I    +   L +GK  H    K    L  FVG+SLIS Y+KCG +E +  VFD++ 
Sbjct: 259 LSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVP 318

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +N+  WNA++   AQ+   +EA + F +M   G+RPN +T L +L+AC+H GLVE+G  
Sbjct: 319 IKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKK 378

Query: 363 YFSQAKLE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF+  K    +PG    +HYA MVDLL R+G+ +EA   +  +P +P    W A + GC+
Sbjct: 379 YFALMKKYEIEPGT---QHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCR 435

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH N +L  FAA ++  L       +VMLSNA + AG++++ +  R+ ++++G+ +  G 
Sbjct: 436 IHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGL 495

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           SWIE  ++VH F  GDR H    EIY  L    E++
Sbjct: 496 SWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEM 531



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 38/216 (17%)

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+  HA  +K   ++   V + LI+FY+K      S  VF++   ++  TW++VI  +AQ
Sbjct: 73  GQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVISSFAQ 132

Query: 319 NGRGEEAIEFFERM------RINGIRPNGVTLLGLLWACN-----HTGLVEKGY--SYFS 365
           N     AI++F RM        + I P+      +L  C+     H  +++ GY    F 
Sbjct: 133 NEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFV 192

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
            + L              VD+ ++ G  KEA+    ++P    +  W  +     I+   
Sbjct: 193 GSSL--------------VDMYAKCGDIKEARNVFDEMPHRNVVS-WSGM-----IYGYT 232

Query: 426 ELGEF-AARRILA---LDPEDVSSYVMLSNALSVAG 457
           +LGE   A R+     L+  DV+ +  LS+ + V G
Sbjct: 233 QLGEHEEAMRLFKEALLEGLDVNDFT-LSSVIRVCG 267



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+       ++VFDEVP  N+     ++   A+  H +EA  LF++M    +RP+ 
Sbjct: 298 ISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNF 357

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            TF  V+ + +    +  GK+  A   K  ++      ++++DL  +   ++EA  V +
Sbjct: 358 ITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIK 416


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/474 (36%), Positives = 271/474 (57%), Gaps = 18/474 (3%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEE--AIYLFSRMLLLN-IRPSEFTFGSVIPSS 118
           H++F+++P  N  S  TII  F++    +   AI LF  M+    I P+ FTF SV+ + 
Sbjct: 72  HKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKAC 131

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF------------ 166
                +  GKQ+H  A K G   + FV S ++ +Y+    +++A  +F            
Sbjct: 132 AKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMM 191

Query: 167 --EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
                 +  VV +  MI G ++    + A  LF +M  R+VVSWN MI GYSQ G  ++A
Sbjct: 192 IDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDA 251

Query: 225 VNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           V +F EM + E + PN+ TL   + A + + +L +G+  H  A     ++D  +G++LI 
Sbjct: 252 VEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 311

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCG +E +++VF++L   N++TW+A+I G+A +G+  +AI+ F +MR  G+RP+ V 
Sbjct: 312 MYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 371

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            + LL AC+H GLVE+G  YFSQ    D    + EHY CMVDLL R G   EA+EF+ ++
Sbjct: 372 YINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNM 431

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P    WKALLG C++H NVE+G+  A  ++ + P D  +YV LSN  +  G W  VS
Sbjct: 432 PIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 491

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +R  MKE  + + PGCSWI+I   +H F+  D +H    EI ++L   ++++R
Sbjct: 492 EMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLR 545



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 148/317 (46%), Gaps = 56/317 (17%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE--AVNLFIEMLREGLV-PNHSTLPCAIIA 249
           A K+F +MP RN  SWN +I G+S++  ++   A+ LF EM+ +  + PN  T P  + A
Sbjct: 71  AHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKA 130

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL-------------- 295
            A    +  GK  H  A+K+    D FV ++L+  Y  CG M+D+               
Sbjct: 131 CAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVM 190

Query: 296 -------------------------------LVFDKLTERNIVTWNAVICGYAQNGRGEE 324
                                          ++FDK+ +R++V+WN +I GY+QNG  ++
Sbjct: 191 MIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKD 250

Query: 325 AIEFFERMRIN-GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-AC 382
           A+E F  M+    IRPN VTL+ +L A +  G +E G      A  ED G+   +   + 
Sbjct: 251 AVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYA--EDSGIRIDDVLGSA 308

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAARRILALDP 440
           ++D+ S+ G  ++A      LP +  I  W A++ G  IH      +  F   R   + P
Sbjct: 309 LIDMYSKCGIIEKAIMVFERLPRENVIT-WSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 367

Query: 441 EDVSSYVMLSNALSVAG 457
            DV +Y+ L  A S AG
Sbjct: 368 SDV-AYINLLTACSHAG 383



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 6/194 (3%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSS 118
           +   +FD++   +VVS  T+I  +++   +++A+ +F  M    +IRP+  T  SV+P+ 
Sbjct: 219 AARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAV 278

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           + L  L LG+ LH +A   G++ +  +GSA++D+Y K   IE+A  VFE     NV++++
Sbjct: 279 SRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWS 338

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLR- 233
            MI G     +  DA+  F +M    V    V++  ++   S  G  EE    F +M+  
Sbjct: 339 AMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSV 398

Query: 234 EGLVPNHSTLPCAI 247
           +GL P      C +
Sbjct: 399 DGLEPRIEHYGCMV 412


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 174/511 (34%), Positives = 276/511 (54%), Gaps = 12/511 (2%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           SL KL ++H  A    +   K   Q L    + T +   GS  D      +VF+ + + +
Sbjct: 266 SLEKLKQIHGKAVTLGLLCSKR--QHLACKLLNTYT-QLGSPVD----AQKVFNHIQNPD 318

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
           +VS T +I  +       +A  +FS +    +RP  F     + +    +DL+ G+ +H 
Sbjct: 319 IVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHG 378

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
              +  L S+  VG+A++D+Y +  +IE A  VF+     +V S+T+++ G +K    E 
Sbjct: 379 MVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEA 438

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAIIAAA 251
           A ++F EMP RN VSW AMI GY Q       + LF EM  EG   P   T+   +   A
Sbjct: 439 ARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCA 498

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +I A  +G S H    K    LDV V N+L+  YAK G++  +L +F ++ +R++ +W  
Sbjct: 499 DIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTT 558

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I G A +G+G  A+E F  M  +G  PN VTLL +L AC+H GLV +G S F   K+  
Sbjct: 559 MISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQ--KMVQ 616

Query: 372 PGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
              +KP  +HY CMVDLL R+G  +EAKE +  +P  P    W++LL  C +H N+ L E
Sbjct: 617 CHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAE 676

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
            A + I+ L+P+D   Y++L N    A +W++    R+ M+++ + + PGCSW+E+   V
Sbjct: 677 MAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVV 736

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           H F+  D  H +  ++Y VL + TEQ+++ +
Sbjct: 737 HEFLAEDAVHCIRADVYTVLEAITEQMKDLD 767


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 163/485 (33%), Positives = 258/485 (53%), Gaps = 32/485 (6%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  V + NV+    +I       + E+A+  +  ML  N+ P+ ++F S+I + T L D 
Sbjct: 33  FANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDS 92

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
             G+ +H    K G  S+VFV + +++ Y     +  + RVF+D    +V ++TTMI   
Sbjct: 93  AFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAH 152

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG------------------------- 219
           ++      A +LF EMP +NV +WNAMI GY + G                         
Sbjct: 153 VRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMN 212

Query: 220 ------RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
                 R +E + LF +++ +G++P+  T+   I A A++ AL +GK  H   V     L
Sbjct: 213 CYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDL 272

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           DV++G+SLI  YAKCGS++ +LLVF KL  +N+  WN +I G A +G  EEA+  F  M 
Sbjct: 273 DVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEME 332

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
              IRPN VT + +L AC H G +E+G  +F     +     + EHY CMVDLLS++G  
Sbjct: 333 RKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLL 392

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
           ++A E + ++  +P    W ALL GC++H N+E+   A + ++ L+P +   Y +L N  
Sbjct: 393 EDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMY 452

Query: 454 SVAGKWDNVSNIRREMKEKGM-TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
           +   +W+ V+ IR  MK+ G+  R PG SW+EI   VH+F   D  H    +++ +L   
Sbjct: 453 AEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVHLFAASDTYHPSYSQLHLLLAEL 512

Query: 513 TEQIR 517
            +Q+R
Sbjct: 513 DDQLR 517



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 4/175 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++P  +++S TT++  +++   Y+E I LF  ++   + P E T  +VI +   L  
Sbjct: 195 LFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGA 254

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGK++H +    G   +V++GS+++D+Y K  SI+ A  VF      N+  +  +I G
Sbjct: 255 LALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDG 314

Query: 184 LLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           L      E+AL++F EM  +    N V++ +++   +  G  EE    F+ M+++
Sbjct: 315 LATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQD 369



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 10/217 (4%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A   F  + + NV+ +NA+I G      +E+A+  ++ MLR  ++P   +    I A   
Sbjct: 29  AASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTL 88

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           +     G++ H    K      VFV  +LI FY+  G +  S  VFD + ER++  W  +
Sbjct: 89  LVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTM 148

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           I  + ++G    A   F+ M       N  T   ++      G  E     F+Q    D 
Sbjct: 149 ISAHVRDGDMASAGRLFDEMP----EKNVATWNAMIDGYGKLGNAESAEFLFNQMPARD- 203

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
                  +  M++  SR+ R+KE     +D+  D G+
Sbjct: 204 ----IISWTTMMNCYSRNKRYKEVIALFHDV-IDKGM 235


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 170/526 (32%), Positives = 275/526 (52%), Gaps = 63/526 (11%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + +    +FD  PD  V     I   +     Y E ++LF +M  +++RP+ FTF  V+ 
Sbjct: 114 QMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLK 173

Query: 117 S----------------------------STALEDLNLG----------------KQLHA 132
           S                            +T L D+  G                + + A
Sbjct: 174 SCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVA 233

Query: 133 WATKVG---LQSNVFVGSAILDL---------------YIKLSSIEEATRVFEDTHNPNV 174
           W + +    L + V +   + DL               YI++  ++ A ++F+     + 
Sbjct: 234 WTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDT 293

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           +S+ TM+ G       E   +LF+EMP RNV SWN +IGGY+  G   E +  F  ML +
Sbjct: 294 MSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLID 353

Query: 235 GLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           GLV PN +TL   + A A + AL +GK  H  A     K  ++VGN+LI  Y+KCG +E+
Sbjct: 354 GLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIEN 413

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           ++ VF+ +  ++++TWN++ICG A +G G +A+  F +M+ING +P+G+T +G+L +C H
Sbjct: 414 AMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTH 473

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLVE+G SYF+    E     + EHY CMVDL  R+G    A EF+  +P +     W 
Sbjct: 474 LGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWA 533

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALLG C+I+ N++L E A ++++ L+P++ ++YV+LSN     G+W +V+ ++  M++ G
Sbjct: 534 ALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTG 593

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
             ++PGCS IE+   V  F + D  H  + EIY VL+   + +R F
Sbjct: 594 SKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSF 639



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/366 (19%), Positives = 141/366 (38%), Gaps = 79/366 (21%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +++ A     G Q N +V   ++  ++ L  +  A  +F+   +P V  +  +  G    
Sbjct: 84  QKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHN 143

Query: 188 ERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             + + + LF +M   +V     ++  ++   ++ G   E   +  E+++ GL  N    
Sbjct: 144 AFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQ--- 200

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKL------------------------------ 273
               +A   I     G++  +    F+G L                              
Sbjct: 201 ---FVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLA 257

Query: 274 ---DVFVGNSLISFYAKCGSMEDSLLVFD------------------------------- 299
              DV + N ++S Y + G M+ +  +FD                               
Sbjct: 258 PERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFE 317

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVE 358
           ++ ERN+ +WN +I GYA NG   E +  F+RM I+G + PN  TL+ +L AC   G ++
Sbjct: 318 EMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALD 377

Query: 359 KG-YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            G + +   A +   G +   +   ++D+ S+ G  + A E    +     I  W +++ 
Sbjct: 378 LGKWVHVYAATIGFKGSIYVGN--ALIDMYSKCGLIENAMEVFESMDLKDLIT-WNSMIC 434

Query: 418 GCQIHS 423
           G   H 
Sbjct: 435 GLATHG 440



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 12/185 (6%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           +V  ++++ +     M  +  +FD   +  +  WNA+  GY  N    E +  F +M+  
Sbjct: 100 YVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSM 159

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRF 393
            +RPN  T   +L +C   G   +G     +      G L+   +    ++D+ S  GR 
Sbjct: 160 DVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVI---KGGLEGNQFVATTLIDVYS-GGRA 215

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSY-VMLSN 451
             +   L+    +  I  W +++ G  + + V L    ARR+  L PE DV  + +M+S 
Sbjct: 216 IGSAYKLFVGMLERNIVAWTSMISGYILCNRVAL----ARRLFDLAPERDVVLWNIMVSG 271

Query: 452 ALSVA 456
            + + 
Sbjct: 272 YIEIG 276


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/516 (33%), Positives = 282/516 (54%), Gaps = 25/516 (4%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C S+   ++ +++H+ A    ++  KA   +L+            + S +      
Sbjct: 30  LLAGCASA---SRAAEIHAAAVRASVDQDKAVAFRLQRAY---------AASGRLDLAVA 77

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL--NIRPSEFTFGSVIPSSTAL 121
           +    PD   V  T+ I   + +  +  A+ L S MLL    + P+  T  + +P+   L
Sbjct: 78  LLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPACGCL 137

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVVSYTTM 180
               +G+ LH +A K+ L    +V +A+L +Y +      A  +F+    +P+VVS T M
Sbjct: 138 A---VGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAM 194

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           +    K  + +DA  LF  +P +++V WNAM+ GY+Q GR  EA+ LF +MLR G+ P+ 
Sbjct: 195 LSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDE 254

Query: 241 STLPCAIIAAANIAALGMGKSFHACAV----KFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            ++  A+ A A +     G+  H+       +   +L+  VG +L+  Y KCGS+E+++ 
Sbjct: 255 VSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVA 314

Query: 297 VFDKLT---ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           VF  L    +R++V WNA+I GYA +GR  EA+E F ++R  G+ P  +T +G+L AC+H
Sbjct: 315 VFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSH 374

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           +GLV++G + F+  + E   + K EHY CMVDLL R+GR +EA + +  +   P    W 
Sbjct: 375 SGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWA 434

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           +LLG C++H N+ LG+  A  ++     +  +YV+LSN  + AGKW  V  +R  M+  G
Sbjct: 435 SLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASG 494

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           + + PGCS +E+  +V  FV GDR+H  + EIYA L
Sbjct: 495 VQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIYAKL 530


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 267/457 (58%), Gaps = 32/457 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYE-EAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VF+++P+ NV+S T II  + +    + EAI LF +M+  +IRP+ F+F SV+ +   L
Sbjct: 290 KVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 349

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D   G+Q++++A K+G+ S   VG++++ +Y +                          
Sbjct: 350 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR-------------------------- 383

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                  R EDA K F  +  +N+VS+NA++ GY++  ++EEA  LF E+   G+  +  
Sbjct: 384 -----SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 438

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    +  AA+I A+G G+  H   +K   K +  + N+LIS Y++CG++E +  VF+++
Sbjct: 439 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM 498

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +RN+++W ++I G+A++G    A+E F +M   G +PN +T + +L AC+H G++ +G 
Sbjct: 499 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQ 558

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            +F+    E   + + EHYACMVDLL RSG   EA EF+  +P       W+ LLG C++
Sbjct: 559 KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV 618

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ELG  AA  IL  +P+D ++Y++LSN  + AG+W +V  IR+ MKE+ + +  GCS
Sbjct: 619 HGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCS 678

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           WIE++++VH F  G+ +H    +IY  L     +I+E
Sbjct: 679 WIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKE 715



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 189/372 (50%), Gaps = 37/372 (9%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S    S ++VFD++P+ N+V+ T +I RFA+     +AI LF  M L    P  FT+ SV
Sbjct: 178 SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV 237

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + + T L  L LGKQLH+   ++GL  +V VG +++D+Y K ++                
Sbjct: 238 LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAA---------------- 281

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR-NEEAVNLFIEMLR 233
                           +D+ K+F++MP  NV+SW A+I  Y Q+G  ++EA+ LF +M+ 
Sbjct: 282 ------------DGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 329

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV-FVGNSLISFYAKCGSME 292
             + PNH +    + A  N++    G+  ++ AVK LG   V  VGNSLIS YA+ G ME
Sbjct: 330 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK-LGIASVNCVGNSLISMYARSGRME 388

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+   FD L E+N+V++NA++ GYA+N + EEA   F  +   GI  +  T   LL    
Sbjct: 389 DARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAA 448

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
             G + KG     +      G  K     C  ++ + SR G  + A +   ++  D  + 
Sbjct: 449 SIGAMGKGEQIHGRLL---KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVI 504

Query: 411 FWKALLGGCQIH 422
            W +++ G   H
Sbjct: 505 SWTSMITGFAKH 516



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 182/358 (50%), Gaps = 49/358 (13%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++VS + ++  FA      +AI+ F  ML L   P+E+ F +VI + +      +G+ ++
Sbjct: 92  DLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIY 151

Query: 132 AWATKVG-LQSNVFVGSAILDLYIKLS-SIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
            +  K G L+++V VG  ++D+++K S  +  A +VF+     N+V++T MI       R
Sbjct: 152 GFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI------TR 205

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
           F                         +Q G   +A++LF++M   G VP+  T    + A
Sbjct: 206 F-------------------------AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 240

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC---GSMEDSLLVFDKLTERNI 306
              +  L +GK  H+  ++    LDV VG SL+  YAKC   GS++DS  VF+++ E N+
Sbjct: 241 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 300

Query: 307 VTWNAVICGYAQNGR-GEEAIEFFERMRINGIRPNGVTLLGLLWACN-----HTGLVEKG 360
           ++W A+I  Y Q+G   +EAIE F +M    IRPN  +   +L AC      +TG  E+ 
Sbjct: 301 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG--EQV 358

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           YSY  +  +     +       ++ + +RSGR ++A++  +D+ F+  +  + A++ G
Sbjct: 359 YSYAVKLGIASVNCVGNS----LISMYARSGRMEDARK-AFDILFEKNLVSYNAIVDG 411



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 126/290 (43%), Gaps = 40/290 (13%)

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           +GR    HH    + L ++    N  P   T+  ++ S     +  LGK +H    + GL
Sbjct: 4   VGRL---HHAFSTLDLMTQQ---NAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGL 57

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           + +  V + ++ LY K    E A  +FE   N                            
Sbjct: 58  ELDSVVLNTLISLYSKCGDTETARLIFEGMGNK--------------------------- 90

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
              R++VSW+AM+  ++      +A+  F++ML  G  PN       I A +N     +G
Sbjct: 91  ---RDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVG 147

Query: 260 KSFHACAVKFLGKL--DVFVGNSLISFYAK-CGSMEDSLLVFDKLTERNIVTWNAVICGY 316
           +  +   VK  G L  DV VG  LI  + K  G +  +  VFDK+ ERN+VTW  +I  +
Sbjct: 148 EIIYGFVVK-TGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 206

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           AQ G   +AI+ F  M ++G  P+  T   +L AC   GL+  G    S+
Sbjct: 207 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 256



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  + S +     + FD + + N+VS   I+  +AK    EEA  LF+ +    I  S 
Sbjct: 378 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 437

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF S++  + ++  +  G+Q+H    K G +SN  + +A++ +Y +  +IE A +VF +
Sbjct: 438 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 497

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEA 224
             + NV+S+T+MI G  K      AL++F +M       N +++ A++   S  G   E 
Sbjct: 498 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 557

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
              F  M +E G+VP      C +
Sbjct: 558 QKHFNSMYKEHGIVPRMEHYACMV 581


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/515 (30%), Positives = 274/515 (53%), Gaps = 37/515 (7%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P +    +   S   + S    +FD   + NVV    +I  +   + Y EA+ +F  ML 
Sbjct: 71  PTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLS 130

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
               P  +TF  V+ + + L++L +G Q+H    KVGL +N+F+G+A++ +Y K   + E
Sbjct: 131 CAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLRE 190

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALK-------------------------- 195
           A +V +     +VVS+ +M+ G  +  +F+DAL+                          
Sbjct: 191 ARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCY 250

Query: 196 -----------LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                      +F+ M  +N++SWN MI  Y       EAV+LF++M   G+ P+  T+ 
Sbjct: 251 TSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIA 310

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + A  +++AL +G+  H    K   + ++ + N+L+  YAKCG +E++  VFDK+  R
Sbjct: 311 SLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLR 370

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           ++V+W +++  Y ++G+G +A+  F +M  +G  P+ +  + +L AC+HTGL+++G  YF
Sbjct: 371 DVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYF 430

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
                +   + + EH+ACMVDL  R+G  +EA  F+  +P +P    W ALL  C++HS 
Sbjct: 431 RMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSK 490

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           +++G  AA  +  L P+    YV+LSN  + AG W +V N+R  MK+ G+ +VPG S +E
Sbjct: 491 MDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVE 550

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +  +VH F+ GD+ H     IY  L     +++E 
Sbjct: 551 LNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKEL 585



 Score = 42.4 bits (98), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 24/158 (15%)

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           ++D  +   L+  Y+  G    +  +FD+  E+N+V +N +I  Y  N    EA+  F+ 
Sbjct: 68  RIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQV 127

Query: 332 MRINGIRPNGVTLLGLLWACN-----------HTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
           M      P+  T   +L AC+           H  +V+ G          D  +      
Sbjct: 128 MLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGL---------DTNLFIGN-- 176

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             +V +  + G  +EA++ L  +P+   +  W +++ G
Sbjct: 177 -ALVAMYGKCGCLREARKVLDQMPYRDVVS-WNSMVAG 212


>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 266/460 (57%), Gaps = 39/460 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFDE+ + NVV+ T +I   A+   YE+ + LF +M   ++ P+  T+ S + + + L+
Sbjct: 44  QVFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQ 103

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G+++H    K+G+QS++ + SA++DLY K  S+EEA  +FE     + VS T ++ 
Sbjct: 104 ALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILV 163

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV--PNH 240
             +                               Q G  EEA+ +F+ M++ G+   PN 
Sbjct: 164 AFM-------------------------------QNGLEEEAIQIFMRMVKLGIEVDPN- 191

Query: 241 STLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             +  AI+    +  +L +GK  H+  +K     ++FV N LI+ Y+KCG + DSL VF 
Sbjct: 192 --MVSAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFH 249

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++T++N V+WN+VI  YA+ G G  A++F++ MR+ GI    VT L LL AC+H GLVEK
Sbjct: 250 EMTQKNSVSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTDVTFLSLLHACSHAGLVEK 309

Query: 360 GYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           G  +  ++   D G+  + EHYAC+VD+L R+G  KEAK+F+  LP +PG+  W+ALLG 
Sbjct: 310 GMEFL-ESMTRDHGLSPRSEHYACVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALLGA 368

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C IH + E+G++AA ++    P+  + YV+++N  S  GKW   +   ++MKE G+ +  
Sbjct: 369 CSIHGDSEMGKYAANQLFLATPDSPAPYVLMANIYSSEGKWKERARSIKKMKEMGVAKEV 428

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G SW+EI+ KV+ FV GD+ H   D I+ +L    + +++
Sbjct: 429 GISWVEIEKKVNSFVVGDKMHPQADAIFWLLSRLLKHLKD 468



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 3/200 (1%)

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
           +Y K   +++A ++F+     + VS+  +I G L+    +   ++F EM  RNVV+W A+
Sbjct: 1   MYSKCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAV 60

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           I G +Q    E+ + LF +M R  + PN  T   A++A + + AL  G+  H    K   
Sbjct: 61  ISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWKLGM 120

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           + D+ + ++L+  Y+KCGS+E++  +F+   E + V+   ++  + QNG  EEAI+ F R
Sbjct: 121 QSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMR 180

Query: 332 MRINGIR--PNGVT-LLGLL 348
           M   GI   PN V+ +LG+ 
Sbjct: 181 MVKLGIEVDPNMVSAILGVF 200



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 139/350 (39%), Gaps = 80/350 (22%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  + +    ++F+   +L+ VS T I+  F +    EEAI +F RM+ L I      
Sbjct: 137 CGSLEEAW----EIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNM 192

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             +++        L LGKQ+H+   K     N+FV + ++++Y K   + ++ +VF    
Sbjct: 193 VSAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVF---- 248

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                       EM  +N VSWN++I  Y++ G    A+  + +
Sbjct: 249 ---------------------------HEMTQKNSVSWNSVIAAYARYGDGFRALQFYDD 281

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  EG            IA  ++  L +    HAC                    +  G 
Sbjct: 282 MRVEG------------IALTDVTFLSL---LHAC--------------------SHAGL 306

Query: 291 MEDSLLVFDKLTERNIVT-----WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           +E  +   + +T  + ++     +  V+    + G  +EA +F E +  N   P  +   
Sbjct: 307 VEKGMEFLESMTRDHGLSPRSEHYACVVDMLGRAGLLKEAKKFIEGLPEN---PGVLVWQ 363

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
            LL AC+  G  E G    +Q  L  P    P  Y  M ++ S  G++KE
Sbjct: 364 ALLGACSIHGDSEMGKYAANQLFLATPD--SPAPYVLMANIYSSEGKWKE 411



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           D    N++IS + +    +    VFD++ ERN+VTW AVI G AQN   E+ +  F++MR
Sbjct: 22  DTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMR 81

Query: 334 INGIRPNGVTLLGLLWACNH-TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
              + PN +T L  L AC+    L+E    +    KL     L  E  + ++DL S+ G 
Sbjct: 82  RGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWKLGMQSDLCIE--SALMDLYSKCGS 139

Query: 393 FKEAKEFL 400
            +EA E  
Sbjct: 140 LEEAWEIF 147


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 166/442 (37%), Positives = 249/442 (56%), Gaps = 36/442 (8%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  +++    +EA+ L+ +M    I    +T+ SV  +  A + L  G+ +H    K G
Sbjct: 396 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 455

Query: 139 LQSNVF-VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           L   V  V +AI D Y K                          CG L     ED  K+F
Sbjct: 456 LDLMVVSVNNAIADAYSK--------------------------CGFL-----EDVRKVF 484

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
             M  R++VSW  ++  YSQ+   EEA+  F  M  EG  PN  T    +I+ A++  L 
Sbjct: 485 DRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLE 544

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
            G+  H    K     +  + ++LI  YAKCGS+ ++  VFDK++  +IV+W A+I GYA
Sbjct: 545 YGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYA 604

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
           Q+G  E+A++ F RM ++GI+ N VTLL +L+AC+H G+VE+G  YF Q  +ED   + P
Sbjct: 605 QHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ--MEDGYGVVP 662

Query: 378 --EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
             EHYAC++DLL R GR  +A EF+  +P +P    W+ LLGGC++H NVELGE AAR+I
Sbjct: 663 EMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKI 722

Query: 436 LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG 495
           L++ PE  ++YV+LSN     G +++  ++R  MK++G+ + PG SWI +K +VH F +G
Sbjct: 723 LSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSG 782

Query: 496 DRNHHMNDEIYAVLRSCTEQIR 517
           D+ H    EIY  L    E+I+
Sbjct: 783 DQQHPQKKEIYVKLEELREKIK 804



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 186/369 (50%), Gaps = 38/369 (10%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           + VF+ + + N VS   +I        + EA  LF RM      P+ +T  SV  +   L
Sbjct: 276 YWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKL 335

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D+N+GK++   A+++G++ NV VG+A++D+Y K  S+ +A  VF DT+  N        
Sbjct: 336 VDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF-DTNFIN-------- 386

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG+                P      WNAMI GYSQ+G ++EA+ L+++M + G+  +  
Sbjct: 387 CGV--------------NTP------WNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 426

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           T      A A   +L  G+  H   +K  L  + V V N++   Y+KCG +ED   VFD+
Sbjct: 427 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 486

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ER+IV+W  ++  Y+Q+  GEEA+  F  MR  G  PN  T   +L +C     +E G
Sbjct: 487 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYG 546

Query: 361 ---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
              +    +A L+    ++    + ++D+ ++ G   EA + ++D   +P I  W A++ 
Sbjct: 547 RQVHGLLCKAGLDTEKCIE----SALIDMYAKCGSITEAGK-VFDKISNPDIVSWTAIIS 601

Query: 418 GCQIHSNVE 426
           G   H  VE
Sbjct: 602 GYAQHGLVE 610



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 140/290 (48%), Gaps = 33/290 (11%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+  +F +   VFDE+P  NV S T +I    +   + +    F  ML   I P +F + 
Sbjct: 166 SKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYS 225

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           ++I S   L+ L LGK +HA     G  +++FV +++L++Y KL SIE++  VF      
Sbjct: 226 AIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEH 285

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N VS+                               NAMI G +  G + EA +LF+ M 
Sbjct: 286 NQVSW-------------------------------NAMISGCTSNGLHLEAFDLFVRMK 314

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
                PN  TL     A   +  + MGK    CA +   + +V VG +LI  Y+KCGS+ 
Sbjct: 315 NGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLH 374

Query: 293 DSLLVFD-KLTERNIVT-WNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           D+  VFD       + T WNA+I GY+Q+G  +EA+E + +M  NGI  +
Sbjct: 375 DARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSD 424



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 10/238 (4%)

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K   F  A  +F EMP RNV SW  MI G ++ G   +    F EML  G++P+      
Sbjct: 167 KCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSA 226

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            I +   + +L +GK  HA  V       +FV  SL++ YAK GS+EDS  VF+ +TE N
Sbjct: 227 IIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHN 286

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YS 362
            V+WNA+I G   NG   EA + F RM+     PN  TL+ +  A      V  G    +
Sbjct: 287 QVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQN 346

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF-DPGIGF-WKALLGG 418
             S+  +E   ++       ++D+ S+ G   +A+  ++D  F + G+   W A++ G
Sbjct: 347 CASELGIEGNVLVG----TALIDMYSKCGSLHDARS-VFDTNFINCGVNTPWNAMISG 399



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 108/210 (51%), Gaps = 9/210 (4%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           AI      CG   D    V +VFD + + ++VS TT++  +++    EEA+  F  M   
Sbjct: 466 AIADAYSKCGFLED----VRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREE 521

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
              P++FTF SV+ S  +L  L  G+Q+H    K GL +   + SA++D+Y K  SI EA
Sbjct: 522 GFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEA 581

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQT 218
            +VF+   NP++VS+T +I G  +    EDAL+LF+ M       N V+   ++   S  
Sbjct: 582 GKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHG 641

Query: 219 GRNEEAVNLFIEMLR-EGLVPNHSTLPCAI 247
           G  EE +  F +M    G+VP      C I
Sbjct: 642 GMVEEGLFYFQQMEDGYGVVPEMEHYACII 671



 Score = 45.4 bits (106), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+KC     +  VFD++ +RN+ +W  +I G  ++G   +  +FF  M  +GI P+    
Sbjct: 165 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 224

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK--EAKEFLYD 402
             ++ +C     +E G    +Q  +         H      LL+   +    E   ++++
Sbjct: 225 SAIIQSCIGLDSLELGKMVHAQIVMRGFA----THIFVSTSLLNMYAKLGSIEDSYWVFN 280

Query: 403 LPFDPGIGFWKALLGGC 419
           +  +     W A++ GC
Sbjct: 281 MMTEHNQVSWNAMISGC 297


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/462 (36%), Positives = 251/462 (54%), Gaps = 39/462 (8%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D+ +S   +    P+ +VV+ T +I    +   +  A++ FS M   +I+P++FTF 
Sbjct: 53  SKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFP 112

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
               +S +L    +GKQ+HA A K G  S+VFVG +  D+Y K    EEA          
Sbjct: 113 CAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEAR--------- 163

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                 K+F EMP RN+ +WNA +      GR ++A+  FIE  
Sbjct: 164 ----------------------KMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEAR 201

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           +EG+ P    +   + A A ++ L +GKS H  AVK     ++FVG++L+  Y KCGS+E
Sbjct: 202 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 261

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR--PNGVTLLGLLWA 350
           D+   FD++ ERN+VTWNA+I GYA  G+ + A+  F+ M     R  PN VT + +L A
Sbjct: 262 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSA 321

Query: 351 CNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C+  G V  G   F   +     +PG    EHYAC+VDLL R+G  ++A +F+  +P  P
Sbjct: 322 CSRAGSVNVGMEIFESMRGRYGIEPG---AEHYACVVDLLGRAGMVEQAYQFIKKMPIRP 378

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
            +  W ALLG  ++    ELG+ AA  +  LDP D  ++V+LSN  + AG+W+  + +R+
Sbjct: 379 TVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRK 438

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           EMK+ G+ +  GCSWI   + VHVF   D +H  N EI A+L
Sbjct: 439 EMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAML 480



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 4/243 (1%)

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           Y  ++    K +R   A  L    P+R+VV+W A+I G  Q GR   A+  F  M R+ +
Sbjct: 45  YNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSI 104

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN  T PCA  A+ ++ +  +GK  HA AVK     DVFVG S    Y+K G  E++  
Sbjct: 105 QPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARK 164

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +FD++ ERNI TWNA +      GR ++A+  F   R  GI P    +  +L AC    +
Sbjct: 165 MFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSV 224

Query: 357 VEKGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           +E G S  + A K    G +     + +VD+  + G  ++A+    ++P +  +  W A+
Sbjct: 225 LEVGKSVHTLAVKACVVGNIFVG--SALVDMYGKCGSIEDAERAFDEMP-ERNLVTWNAM 281

Query: 416 LGG 418
           +GG
Sbjct: 282 IGG 284



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 15/228 (6%)

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL-GKLDVFVGNSLISFYAKCGSMEDS 294
           L PN  +L   + +A +     +G++ HA  +K L   L  F+ N L++ Y+K      +
Sbjct: 4   LSPN--SLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSA 61

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN-- 352
            L+      R++VTW A+I G  QNGR   A+  F  MR + I+PN  T      A    
Sbjct: 62  QLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSL 121

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV-DLLSRSGRFKEAKEFLYDLPFDPGIGF 411
            + LV K       A     G +      C   D+ S++G  +EA++   ++P +  I  
Sbjct: 122 RSPLVGKQV----HALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMP-ERNIAT 176

Query: 412 WKALLGGCQIHSNVE--LGEFAARRILALDPED--VSSYVMLSNALSV 455
           W A L    +    +  L  F   R   ++P D  VSS +     LSV
Sbjct: 177 WNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSV 224


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 259/478 (54%), Gaps = 33/478 (6%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P +R   +S  S S  F    ++FD   D +VV+ T +I  F +     EA+  F  M  
Sbjct: 138 PFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKK 197

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIE 160
             +  +E T  SV+ ++  +ED+  G+ +H    + G ++ +VF+GS+++D+Y K S   
Sbjct: 198 TGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSC-- 255

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                        ++DA K+F EMP RNVV+W A+I GY Q+  
Sbjct: 256 -----------------------------YDDAQKVFDEMPSRNVVTWTALIAGYVQSRC 286

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            ++ + +F EML+  + PN  TL   + A A++ AL  G+  H   +K   +++   G +
Sbjct: 287 FDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTT 346

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI  Y KCG +E+++LVF++L E+N+ TW A+I G+A +G   +A + F  M  + + PN
Sbjct: 347 LIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPN 406

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            VT + +L AC H GLVE+G   F   K      LK +HYACMVDL  R G  +EAK  +
Sbjct: 407 EVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALI 466

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             +P +P    W AL G C +H + ELG++AA R++ L P     Y +L+N  S +  WD
Sbjct: 467 ERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWD 526

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHM-NDEIYAVLRSCTEQIR 517
            V+ +R++MK++ + + PG SWIE+K K+  F+  D    + +D++Y  L +   Q+R
Sbjct: 527 EVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQMR 584



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 8/234 (3%)

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQ--TGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
           +F  A +L  ++   ++  W+++IG +S   T     +   +  M R G++P+  T P  
Sbjct: 51  QFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPL 110

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A   +      + FHA  VKF    D FV NSLIS Y+  G  + +  +FD   ++++
Sbjct: 111 LKAVFKLRDSNPFQ-FHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDV 169

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           VTW A+I G+ +NG   EA+ +F  M+  G+  N +T++ +L A      V  G S    
Sbjct: 170 VTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSV--H 227

Query: 367 AKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               + G +K + +  + +VD+  +   + +A++   ++P    +  W AL+ G
Sbjct: 228 GLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP-SRNVVTWTALIAG 280


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/513 (32%), Positives = 278/513 (54%), Gaps = 11/513 (2%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I LL  C + LS+ +L ++ +       +   + +  ++   I    +   S        
Sbjct: 25  IHLLLRCATQLSMRQLFEIQA-------QIIASPIPSIDPNIIAVKFIGVSSSHGNLRHS 77

Query: 62  HQVFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL--NIRPSEFTFGSVIPSS 118
             +F+      N+ +   ++  F++ + +   I  F+  L+L     P E+TF SV+ + 
Sbjct: 78  VLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKAC 137

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L  +  G+++H + TK G +SN+FV ++++DLY K+     A ++F++    +VVS+ 
Sbjct: 138 AGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWN 197

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LV 237
           T+I G       + A  +F  M  +N+VSW+ MI GY++  +  +A+ LF +M  EG L 
Sbjct: 198 TLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLA 257

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  TL   + A A++ AL +GK  H    +   ++ +F+GN+L   YAKCG + ++  V
Sbjct: 258 PNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGV 317

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F ++ ER++++W+ +I G A  G   EA  FF  M  +G+ PN ++ +GLL AC H GLV
Sbjct: 318 FHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLV 377

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           +KG  YF           K EHY C+VDLLSR+GR  +A+  +  +P  P +  W ALLG
Sbjct: 378 DKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLG 437

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
           GC+I+ + E GE    RIL LD     S V L+N  +  G+ D+ ++ R  M++    + 
Sbjct: 438 GCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKT 497

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           PGCSWIEI + V+ F  GD +H  +  IY+++R
Sbjct: 498 PGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIR 530


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 267/457 (58%), Gaps = 32/457 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYE-EAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VF+++P+ NV+S T II  + +    + EAI LF +M+  +IRP+ F+F SV+ +   L
Sbjct: 308 KVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNL 367

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D   G+Q++++A K+G+ S   VG++++ +Y +                          
Sbjct: 368 SDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR-------------------------- 401

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                  R EDA K F  +  +N+VS+NA++ GY++  ++EEA  LF E+   G+  +  
Sbjct: 402 -----SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 456

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    +  AA+I A+G G+  H   +K   K +  + N+LIS Y++CG++E +  VF+++
Sbjct: 457 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEM 516

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +RN+++W ++I G+A++G    A+E F +M   G +PN +T + +L AC+H G++ +G 
Sbjct: 517 EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQ 576

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            +F+    E   + + EHYACMVDLL RSG   EA EF+  +P       W+ LLG C++
Sbjct: 577 KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRV 636

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N ELG  AA  IL  +P+D ++Y++LSN  + AG+W +V  IR+ MKE+ + +  GCS
Sbjct: 637 HGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCS 696

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           WIE++++VH F  G+ +H    +IY  L     +I+E
Sbjct: 697 WIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKE 733



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 189/372 (50%), Gaps = 37/372 (9%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S    S ++VFD++P+ N+V+ T +I RFA+     +AI LF  M L    P  FT+ SV
Sbjct: 196 SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV 255

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + + T L  L LGKQLH+   ++GL  +V VG +++D+Y K ++                
Sbjct: 256 LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAA---------------- 299

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR-NEEAVNLFIEMLR 233
                           +D+ K+F++MP  NV+SW A+I  Y Q+G  ++EA+ LF +M+ 
Sbjct: 300 ------------DGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 347

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV-FVGNSLISFYAKCGSME 292
             + PNH +    + A  N++    G+  ++ AVK LG   V  VGNSLIS YA+ G ME
Sbjct: 348 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK-LGIASVNCVGNSLISMYARSGRME 406

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+   FD L E+N+V++NA++ GYA+N + EEA   F  +   GI  +  T   LL    
Sbjct: 407 DARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAA 466

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
             G + KG     +      G  K     C  ++ + SR G  + A +   ++  D  + 
Sbjct: 467 SIGAMGKGEQIHGRLL---KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVI 522

Query: 411 FWKALLGGCQIH 422
            W +++ G   H
Sbjct: 523 SWTSMITGFAKH 534



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 182/358 (50%), Gaps = 49/358 (13%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++VS + ++  FA      +AI+ F  ML L   P+E+ F +VI + +      +G+ ++
Sbjct: 110 DLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIY 169

Query: 132 AWATKVG-LQSNVFVGSAILDLYIKLS-SIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
            +  K G L+++V VG  ++D+++K S  +  A +VF+     N+V++T MI       R
Sbjct: 170 GFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI------TR 223

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
           F                         +Q G   +A++LF++M   G VP+  T    + A
Sbjct: 224 F-------------------------AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 258

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC---GSMEDSLLVFDKLTERNI 306
              +  L +GK  H+  ++    LDV VG SL+  YAKC   GS++DS  VF+++ E N+
Sbjct: 259 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 318

Query: 307 VTWNAVICGYAQNGR-GEEAIEFFERMRINGIRPNGVTLLGLLWACN-----HTGLVEKG 360
           ++W A+I  Y Q+G   +EAIE F +M    IRPN  +   +L AC      +TG  E+ 
Sbjct: 319 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTG--EQV 376

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           YSY  +  +     +       ++ + +RSGR ++A++  +D+ F+  +  + A++ G
Sbjct: 377 YSYAVKLGIASVNCVGNS----LISMYARSGRMEDARK-AFDILFEKNLVSYNAIVDG 429



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 126/290 (43%), Gaps = 40/290 (13%)

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           +GR    HH    + L ++    N  P   T+  ++ S     +  LGK +H    + GL
Sbjct: 22  VGRL---HHAFSTLDLMTQQ---NAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGL 75

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           + +  V + ++ LY K    E A  +FE   N                            
Sbjct: 76  ELDSVVLNTLISLYSKCGDTETARLIFEGMGNK--------------------------- 108

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
              R++VSW+AM+  ++      +A+  F++ML  G  PN       I A +N     +G
Sbjct: 109 ---RDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVG 165

Query: 260 KSFHACAVKFLGKL--DVFVGNSLISFYAK-CGSMEDSLLVFDKLTERNIVTWNAVICGY 316
           +  +   VK  G L  DV VG  LI  + K  G +  +  VFDK+ ERN+VTW  +I  +
Sbjct: 166 EIIYGFVVK-TGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 224

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           AQ G   +AI+ F  M ++G  P+  T   +L AC   GL+  G    S+
Sbjct: 225 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSR 274



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  + S +     + FD + + N+VS   I+  +AK    EEA  LF+ +    I  S 
Sbjct: 396 ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 455

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF S++  + ++  +  G+Q+H    K G +SN  + +A++ +Y +  +IE A +VF +
Sbjct: 456 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 515

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEA 224
             + NV+S+T+MI G  K      AL++F +M       N +++ A++   S  G   E 
Sbjct: 516 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 575

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
              F  M +E G+VP      C +
Sbjct: 576 QKHFNSMYKEHGIVPRMEHYACMV 599


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 168/465 (36%), Positives = 263/465 (56%), Gaps = 6/465 (1%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFA---KQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
            S  HQ+FD++P  +V    T+I   A      H    I+L S + +    P+ +TF  V
Sbjct: 65  LSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFL-SMVRVSGFLPNRYTFVFV 123

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
             +      +  G+Q+   A K+GL+SN+FV +A++ +Y     ++EA RVF+ + + ++
Sbjct: 124 FKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDL 183

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
            S+  MI G +       A ++F EM  R+VVSW  +I GY Q G  +EA++LF EML+ 
Sbjct: 184 YSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQT 243

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G  PN  TL  A+ A AN+ AL  G+  H    K   K++  +  SL+  YAKCG ++ +
Sbjct: 244 GPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFA 303

Query: 295 LLVF--DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
             VF  +   +  +  WNA+I GYA +G+ +EAI+ FE+M++  + PN VT + LL AC+
Sbjct: 304 AKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACS 363

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H  LVE+G  YF           + EHY CMVDLL RSG  KEA+E ++++P  P    W
Sbjct: 364 HGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIW 423

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALLG C+IH ++E G+   + I  LD + +  +V+L+N  S +G+WD    +R++++  
Sbjct: 424 GALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVS 483

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           G  + PGCS IE+    H F+ GDR+H    ++Y  L   T +++
Sbjct: 484 GRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLK 528


>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 165/474 (34%), Positives = 271/474 (57%), Gaps = 36/474 (7%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P+ NVVS T++I  +++      A+  + +ML   + P +FTFGS+I + ++L D+ LG
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +QLHA   K    +++   +A++ +Y K + I +A  VF      +++S+ +MI G  + 
Sbjct: 61  RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120

Query: 188 ERFEDALKLFQEMPHR---NVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLV------ 237
               +AL  F+EM H+   ++V+WNA+I G++  G   +A+  F EM     LV      
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFAY-GELRDAIFFFEEMRCNADLVSWNAIL 179

Query: 238 -------------------------PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
                                    P++ TL   + A+A   ++ +G   H  A+K    
Sbjct: 180 TACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLN 239

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            D  V N LI  YAKCGS++ +  +FD +   ++V+W+++I GYAQ G GEEA++ F+ M
Sbjct: 240 CDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTM 299

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
           R   ++PN VT +G+L AC+H GLVE+G+  +   + E       EH +CMVDLL+R+G 
Sbjct: 300 RRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGC 359

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
             EA+ F++ + FDP I  WK LL  C+ H NV++G+ AA  IL +DP + +++V+L N 
Sbjct: 360 LNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNI 419

Query: 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
            +  G W++V+ +R  MK++G+ +VPG SWIE+K ++HVF   D  H   ++IY
Sbjct: 420 YASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERNKIY 473



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 71/133 (53%), Gaps = 6/133 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS      + H++FD + + +VVS +++I  +A+  + EEA+ LF  M  L+++P+  T
Sbjct: 255 CGS----LKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVT 310

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATR-VFED 168
           F  V+ + + +  +  G +L+    K  G+       S ++DL  +   + EA   + + 
Sbjct: 311 FVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQM 370

Query: 169 THNPNVVSYTTMI 181
             +P++V + T++
Sbjct: 371 AFDPDIVVWKTLL 383


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 265/478 (55%), Gaps = 35/478 (7%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+    V+  S+ +  +   ++FD   D N ++ + ++  +++     EAI LFSRM   
Sbjct: 246 ALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSA 305

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            I+PSE+T   V+ + + +  L  GKQLH++  K+G + ++F  +A++D+Y K   +   
Sbjct: 306 GIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLA-- 363

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                                        DA K F  +  R+V  W ++I GY Q   NE
Sbjct: 364 -----------------------------DARKGFDCLQERDVALWTSLISGYVQNSDNE 394

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+ L+  M   G++PN  T+   + A +++A L +GK  H   +K    L+V +G++L 
Sbjct: 395 EALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALS 454

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + Y KCGS+ED  LVF +   +++V+WNA+I G + NG+G+EA+E FE M   G  P+ V
Sbjct: 455 TMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDV 514

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFL 400
           T + ++ AC+H G VE+G+SYF    + D   L P  +HYACMVD+LSR+G+ KE KEF+
Sbjct: 515 TFVNIISACSHKGFVERGWSYFHM--MSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFI 572

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
                D G+  W+ LL  C+ H N ELG +A  ++++L   + S+YV L+   +  G+  
Sbjct: 573 ESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTALGRMR 632

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +V  + + M+  G+++  GCSWI +K++ HVFV GD  H   +E   ++   + Q+ E
Sbjct: 633 DVERVWKLMRTNGVSKEVGCSWIALKNQWHVFVVGDTMHPRIEETKDLVSLVSRQMLE 690



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 144/312 (46%), Gaps = 33/312 (10%)

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           S++ F +V+ S  A   + LG+Q+H    K GL   V + +A++ +Y K  S+ EA ++F
Sbjct: 209 SDYVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMF 268

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
           + + + N ++++ M+ G                               YSQ G + EA+ 
Sbjct: 269 DSSGDRNSITWSAMVTG-------------------------------YSQNGESLEAIK 297

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF  M   G+ P+  T+   + A ++I  L  GK  H+  +K   +  +F   +L+  YA
Sbjct: 298 LFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYA 357

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           K G + D+   FD L ER++  W ++I GY QN   EEA+  + RM+  GI PN  T+  
Sbjct: 358 KAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMAS 417

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           +L AC+    +E G            G+  P   A +  + ++ G  ++        P +
Sbjct: 418 VLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSA-LSTMYTKCGSLEDGNLVFRRTP-N 475

Query: 407 PGIGFWKALLGG 418
             +  W A++ G
Sbjct: 476 KDVVSWNAMISG 487



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 194/437 (44%), Gaps = 77/437 (17%)

Query: 44  IRTDSVSCGSESD----------KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA- 92
           IRT + +C   ++          + +  H +F+ +   +VVS  ++I  +++      + 
Sbjct: 43  IRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSH 102

Query: 93  --IYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150
             + LF  M   +I P+ +T   +  + ++L+   +G+Q HA   K+    +++V ++++
Sbjct: 103 TVMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLV 162

Query: 151 DLYIK--LSSIEEATRVFEDTHNPNVV--SYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
            +Y K  L  +      F   +  +V+     + IC L ++E+  D+  +F  +      
Sbjct: 163 GMYCKAGLKYLYMVYYGFWLCYKKDVLRRQLKSSICFLEEKEKESDSDYVFTAV------ 216

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
                                                   + + A    +G+G+  H   
Sbjct: 217 ----------------------------------------LSSLAATVYVGLGRQIHGIT 236

Query: 267 VK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
           VK   LG   V + N+L++ Y+KC S+ ++  +FD   +RN +TW+A++ GY+QNG   E
Sbjct: 237 VKNGLLGF--VALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLE 294

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYA 381
           AI+ F RM   GI+P+  T++G+L AC+    + +G   +S+  +   E           
Sbjct: 295 AIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFAT----T 350

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI--LALD 439
            +VD+ +++G   +A++  +D   +  +  W +L+ G   +S+ E      RR+    + 
Sbjct: 351 ALVDMYAKAGCLADARKG-FDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGII 409

Query: 440 PEDVSSYVMLSNALSVA 456
           P D +   +L    S+A
Sbjct: 410 PNDPTMASVLKACSSLA 426



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           STL  A+   +    L  G++ HA  ++          N L++FYAKCG +  +  +F+ 
Sbjct: 17  STLLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNA 76

Query: 301 LTERNIVTWNAVICGYAQNG---RGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +++V+WN++I GY+QNG        ++ F  MR   I PN  TL G+  A
Sbjct: 77  IICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPNAYTLAGIFKA 129



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 12/163 (7%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C   ++L L K    H++   + +E    S       A+ T    CGS  D     + VF
Sbjct: 422 CSSLATLELGKQVHGHTIKHGFGLEVPIGS-------ALSTMYTKCGSLEDG----NLVF 470

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
              P+ +VVS   +I   +     +EA+ LF  ML     P + TF ++I + +    + 
Sbjct: 471 RRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVE 530

Query: 126 LG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            G    H  + + GL   V   + ++D+  +   ++E     E
Sbjct: 531 RGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFIE 573


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 165/466 (35%), Positives = 262/466 (56%), Gaps = 27/466 (5%)

Query: 64   VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALE 122
            VFD V    V     ++  +A+    ++A+ LF  M+  +   P+  TF SV+P+    +
Sbjct: 592  VFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCK 651

Query: 123  DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
              +  + +H +  K G   + +V +A++D+Y ++  +E +  +F   +  ++VS+ TMI 
Sbjct: 652  VFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMIT 711

Query: 183  GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV---PN 239
            G +   R++DAL L  EM  R                + E+  + F++   +G V   PN
Sbjct: 712  GCIVCGRYDDALNLLHEMQRR----------------QGEDGSDTFVDYEDDGGVPFKPN 755

Query: 240  HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
              TL   +   A +AALG GK  HA AVK    +DV VG++L+  YAKCG +  +  VFD
Sbjct: 756  SVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFD 815

Query: 300  KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING------IRPNGVTLLGLLWACNH 353
            ++  RN++TWN +I  Y  +G+GEEA+E F  M   G      IRPN VT + +  AC+H
Sbjct: 816  QMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSH 875

Query: 354  TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG-IGFW 412
            +G+V++G   F   K       + +HYAC+VDLL RSGR KEA E +  +P +   +  W
Sbjct: 876  SGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAW 935

Query: 413  KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
             +LLG C+IH +VE GE AA+ +  L+P   S YV++SN  S AG WD    +R++MKE 
Sbjct: 936  SSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEM 995

Query: 473  GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            G+ + PGCSWIE   +VH F++GD +H  + E++  L + ++++R+
Sbjct: 996  GVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRK 1041



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 173/389 (44%), Gaps = 71/389 (18%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG      ++  QVFD++PD + VS  ++I    +   +E +++LF  ML  N+ P+ FT
Sbjct: 380 CGD----LTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFT 435

Query: 111 FGSVIPSSTALED-LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
             SV  + + +   + LGKQ+HA+  + G     +  +A++ +Y +L             
Sbjct: 436 LVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLG------------ 482

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                              R  DA  LF     +++VSWN +I   SQ  R EEA+    
Sbjct: 483 -------------------RVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVY 523

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL--DVFVGNSLISFYAK 287
            M+ +G+ P+  TL   + A + +  L +G+  H  A++  G L  + FVG +L+  Y  
Sbjct: 524 LMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRN-GDLIENSFVGTALVDMYCN 582

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF-ERMRINGIRPNGVTLLG 346
           C   +   LVFD +  R +  WNA++ GYA+N   ++A+  F E +  +   PN  T   
Sbjct: 583 CKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFAS 642

Query: 347 LLWACN-----------HTGLVEKGYS---YFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
           +L AC            H  +V++G+    Y   A               ++D+ SR GR
Sbjct: 643 VLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNA---------------LMDMYSRMGR 687

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            + +K     +     I  W  ++ GC +
Sbjct: 688 VEISKTIFGRMN-KRDIVSWNTMITGCIV 715



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 162/334 (48%), Gaps = 38/334 (11%)

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG--LQSNVFVG 146
           + +AI  ++ ML     P  F F +V+ ++ A+ DL LGKQ+HA   K G    S+V V 
Sbjct: 311 FRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVA 370

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           ++++++Y K   +  A +VF+D                               +P R+ V
Sbjct: 371 NSLVNMYGKCGDLTAARQVFDD-------------------------------IPDRDHV 399

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI-AALGMGKSFHAC 265
           SWN+MI    +    E +++LF  ML E + P   TL     A +++   + +GK  HA 
Sbjct: 400 SWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAY 459

Query: 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325
            ++  G L  +  N+L++ YA+ G + D+  +F     +++V+WN VI   +QN R EEA
Sbjct: 460 TLRN-GDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEA 518

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMV 384
           + +   M ++G+RP+GVTL  +L AC+    +  G      A L +  +++       +V
Sbjct: 519 LMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYA-LRNGDLIENSFVGTALV 577

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           D+     + K+ +  ++D      +  W ALL G
Sbjct: 578 DMYCNCKQPKKGR-LVFDGVVRRTVAVWNALLAG 610



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 5/201 (2%)

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           R+   W  ++   + +    +A++ +  ML     P++   P  + AAA +  L +GK  
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 263 HACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
           HA   KF       V V NSL++ Y KCG +  +  VFD + +R+ V+WN++I    +  
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFE 412

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT-GLVEKGYSYFSQAKLEDPGMLKPEH 379
             E ++  F  M    + P   TL+ +  AC+H  G V  G      A     G L+   
Sbjct: 413 EWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQV--HAYTLRNGDLRTYT 470

Query: 380 YACMVDLLSRSGRFKEAKEFL 400
              +V + +R GR  +AK   
Sbjct: 471 NNALVTMYARLGRVNDAKALF 491


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/496 (34%), Positives = 270/496 (54%), Gaps = 40/496 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDEVP  ++V+  ++I  + +    +EAI ++ RM+   I P EFTF SV  + + L 
Sbjct: 132 KVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLG 191

Query: 123 DLNLGKQLHAWATKVGLQ-SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            ++ G++ H  +  +G+  SNVFVGSA++D+Y K   + +A  V +     +VV +T +I
Sbjct: 192 LVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALI 251

Query: 182 CGLLKRERFEDALKLFQEMPHRNV------------------------------------ 205
            G        ++L++F+ M  + +                                    
Sbjct: 252 VGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLE 311

Query: 206 --VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
             V+W ++I G  Q GR E A+  F +MLR  + PN  TL   + A +++A L  GK  H
Sbjct: 312 SAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIH 371

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
           A  +KF   +D +VG +LI FY KCGS E +  VF+ L E ++V+ N++I  YAQNG G 
Sbjct: 372 AIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGH 431

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383
           EA++ F  M+  G+ PN VT LG+L ACN+ GL+E+G   FS A+      L  +HYACM
Sbjct: 432 EALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACM 491

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443
           VDLL R+GR KEA E L +      +  W+ LL  C+IH +VE+ +    R++ L PED 
Sbjct: 492 VDLLGRAGRLKEA-EMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDG 550

Query: 444 SSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMND 503
            ++V+LSN  +  G W  V  ++  M+E  + + P  SW++++ ++H F+ GD +H    
Sbjct: 551 GTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFR 610

Query: 504 EIYAVLRSCTEQIREF 519
           +I   L    E+++E 
Sbjct: 611 DIREKLEELIEKVKEL 626



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 100/162 (61%), Gaps = 1/162 (0%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A K+F E+PHR++V+WN+MI  Y + GR++EA++++  M+ +G++P+  T      A ++
Sbjct: 130 ARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSD 189

Query: 253 IAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +  +  G+  H  +V   +G  +VFVG++L+  YAK G M D+ LV D++  +++V + A
Sbjct: 190 LGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTA 249

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +I GY+ +G   E+++ F  M   GI  N  TL  +L  C +
Sbjct: 250 LIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGN 291



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 40/290 (13%)

Query: 49  VSCGSESDKFSS--VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP 106
           V CG+  D  S   +H +  +    + V+ T++I    +    E A+  F +ML  +I P
Sbjct: 287 VCCGNLEDLTSGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITP 346

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           + FT  SV+ + ++L  L  GKQ+HA   K GL  + +VG+A++D Y K  S E A  VF
Sbjct: 347 NSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVF 406

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNE 222
                 +VVS  +MI    +     +AL+LF  M       N V+W  ++   +  G  E
Sbjct: 407 NGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLE 466

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           E  ++F                    +A N   + + K  +AC V  LG           
Sbjct: 467 EGCHIF-------------------SSARNSGNIELTKDHYACMVDLLG----------- 496

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
               + G ++++ ++ +++   ++V W  ++     +G  E A     R+
Sbjct: 497 ----RAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRV 542



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 81/146 (55%), Gaps = 1/146 (0%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +GN LI  Y KCGS+  +  VFD++  R+IV WN++I  Y +NGR +EAI+ ++RM  +G
Sbjct: 113 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 172

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           I P+  T   +  A +  GLV +G     Q+ +   G+      + +VD+ ++ G+ ++A
Sbjct: 173 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDA 232

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIH 422
           +  + D      +  + AL+ G   H
Sbjct: 233 R-LVSDQVVGKDVVLFTALIVGYSHH 257


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 166/467 (35%), Positives = 264/467 (56%), Gaps = 14/467 (2%)

Query: 54  ESDKFSSVHQVFDEVPDLNV----VSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSE 108
           ES   S   ++FD +  L +    +S  +II  + +   ++EA  +F  ML+   I P  
Sbjct: 375 ESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDS 434

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT GSV+ +      L  GK++HA A   GLQS+ FVG A++++Y K   +  A   F++
Sbjct: 435 FTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDE 494

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEA 224
               +V ++  +I G  +  + E    L ++M     H N+ +WN+++ G  +  + +  
Sbjct: 495 VMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLT 554

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           + LF EM    L P+  T+   + A + +A L  GK  HA ++K     DV +G +L+  
Sbjct: 555 MQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDM 614

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YAKCGS++ + L +D+++  N+V+ NA++   A +G GEE I  F+ M   G  P+ VT 
Sbjct: 615 YAKCGSLKYAQLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTF 674

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYD 402
           L +L +C H G VE G  +F      +   +KP  +HY  MVDLLSRSG+  EA E +  
Sbjct: 675 LSVLSSCVHVGSVETGCEFFDLMGYYN---VKPTLKHYTSMVDLLSRSGQLHEAYELIKK 731

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P +     W ALLGGC  H N+ELGE AA R++ L+P +  +YV+L+N  + A +W ++
Sbjct: 732 MPVECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDL 791

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           + +R  MK++GM + PGCSWIE K+++H F+  DR+H   +EIYA L
Sbjct: 792 ARVRGMMKDRGMHKSPGCSWIEDKNEIHSFLACDRSHKRAEEIYATL 838



 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 211/428 (49%), Gaps = 46/428 (10%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVVS + +IG FA+  + EEAI +  RM +  + P+  T   V+P+   L+ L+LGKQLH
Sbjct: 261 NVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLH 320

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            + T+    SN  V +A++D+Y +   +  A ++F      NV+S  TMI G  +     
Sbjct: 321 GYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVS 380

Query: 192 DALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCA 246
            A +LF  M      R ++SWN++I GY +    +EA ++F  ML  EG+ P+  TL   
Sbjct: 381 KAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSV 440

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A A+  +L  GK  HA A+    + D FVG +L+  Y+KC  +  + + FD++ E+++
Sbjct: 441 LTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDV 500

Query: 307 VTWNAVICGYAQNGRGEE-----------------------------------AIEFFER 331
            TWNA+I GY ++ + E                                     ++ F  
Sbjct: 501 PTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSE 560

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRS 390
           M+I+ +RP+  T+  +L AC+    +E+G    + A     G     H  A +VD+ ++ 
Sbjct: 561 MQISKLRPDIYTVGIILPACSRLATLERGKQ--AHAHSIKCGYDTDVHIGAALVDMYAKC 618

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD--PEDVSSYVM 448
           G  K A +  YD   +P +    A+L  C +H + E G    + +LAL   P+ V+   +
Sbjct: 619 GSLKYA-QLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSV 677

Query: 449 LSNALSVA 456
           LS+ + V 
Sbjct: 678 LSSCVHVG 685



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 186/406 (45%), Gaps = 47/406 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+ +P  N+ S   I+  +     +EEA  LF  +    +    F F  V  + + L  
Sbjct: 116 LFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGS 175

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           + LG+QLH    K     N++V +A++D+Y K  S+++A +V       + V++ ++I  
Sbjct: 176 VELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITA 235

Query: 184 LLKRERFEDALKLFQEMPH-----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                   +AL+  ++M        NVVSW+A+IGG++Q G +EEA+ +   M  EGLVP
Sbjct: 236 CAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVP 295

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           N  TL   + A A +  L +GK  H    +     +  V N+L+  Y +CG M  +  +F
Sbjct: 296 NAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIF 355

Query: 299 DKLT-----------------------------------ERNIVTWNAVICGYAQNGRGE 323
            K +                                   ER +++WN++I GY +N   +
Sbjct: 356 LKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFD 415

Query: 324 EAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-- 380
           EA   F+ M +  GI P+  TL  +L AC  T  + +G    +QA ++    L+ + +  
Sbjct: 416 EAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKG---LQSDTFVG 472

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
             +V++ S+      A +  +D   +  +  W AL+ G    + +E
Sbjct: 473 GALVEMYSKCQDLT-AAQVAFDEVMEKDVPTWNALISGYTRSNQIE 517



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 134/292 (45%), Gaps = 71/292 (24%)

Query: 97  SRMLLLNIRP-SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
           S   LL+ +P +   + SV+ S    +   LGKQ+HA   K G  ++ F+ + +L +Y +
Sbjct: 50  SNFSLLDNKPLNTSKYASVLDSCKCPK---LGKQVHAHTIKTGFDADGFIDTKLLQMYAR 106

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
                                     CGLLK     DA  LF+ MP RN+ SW A++  Y
Sbjct: 107 --------------------------CGLLK-----DADFLFETMPMRNLHSWKAILSVY 135

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
              G  EEA  LF  +  +G+  +    P    A + + ++ +G+  H   +KF   L++
Sbjct: 136 LDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNI 195

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN------------------------- 310
           +V N+LI  Y KCGS++D+  V  K+ ER+ VTWN                         
Sbjct: 196 YVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSL 255

Query: 311 -----------AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
                      AVI G+AQNG  EEAIE   RM++ G+ PN  TL G+L AC
Sbjct: 256 DYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPAC 307



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 152/377 (40%), Gaps = 86/377 (22%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDS-VSCGSESDKFSSVH 62
           +L  C  ++SL +  ++H+          +A V+ L++      + V   S+    ++  
Sbjct: 440 VLTACADTISLRQGKEIHA----------QAIVKGLQSDTFVGGALVEMYSKCQDLTAAQ 489

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIY---------------------------- 94
             FDEV + +V +   +I  + + +  E   Y                            
Sbjct: 490 VAFDEVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENR 549

Query: 95  -------LFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147
                  LFS M +  +RP  +T G ++P+ + L  L  GKQ HA + K G  ++V +G+
Sbjct: 550 QLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGA 609

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
           A++D+Y K  S++ A   ++   NPN+VS+  M+                          
Sbjct: 610 ALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAMLTAC----------------------- 646

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
                   +  G  EE ++LF  ML  G +P+H T    + +  ++ ++  G  F     
Sbjct: 647 --------AMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMG 698

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNAVICGYAQNGR---GE 323
            +  K  +    S++   ++ G + ++  +  K+  E + V W A++ G   +G    GE
Sbjct: 699 YYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELGE 758

Query: 324 EAIEFFERMRINGIRPN 340
            A E     R+  + PN
Sbjct: 759 IAAE-----RLIELEPN 770


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 170/463 (36%), Positives = 264/463 (57%), Gaps = 33/463 (7%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     ++F  + + +VVS T +I  +A+   + EA+ LF  M    I      F S I 
Sbjct: 523 KLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAIS 582

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   ++ LN G+Q+HA A   G   ++ VG+A++ LY +                     
Sbjct: 583 ACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYAR--------------------- 621

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                CG     +  DA   F ++  ++ +SWN++I G++Q+G  EEA++LF +M + G 
Sbjct: 622 -----CG-----KVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQ 671

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             N  T   A+ AAAN+A + +GK  HA  +K     +  V N LI+ YAKCG+++D+  
Sbjct: 672 EINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAER 731

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F ++ E+N ++WNA++ GY+Q+G G +A+  FE M+  G+ PN VT +G+L AC+H GL
Sbjct: 732 QFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGL 791

Query: 357 VEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           V++G  YF Q+  E  G++ KPEHYAC+VDLL RSG    A+ F+ ++P  P     + L
Sbjct: 792 VDEGIKYF-QSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTL 850

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C +H N+++GEFAA  +L L+P+D ++YV+LSN  +V GKW      R+ MK++G+ 
Sbjct: 851 LSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVK 910

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + PG SWIE+ + VH F  GD+ H   D+IY  LR   E   E
Sbjct: 911 KEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAE 953



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 200/425 (47%), Gaps = 58/425 (13%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           + H+ F      NVV    ++  +    +  E+  +F++M +  I P++FT+ S++ + +
Sbjct: 425 TAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCS 484

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           +L  ++LG+Q+H    K G Q NV+V S ++D+Y KL  ++ A ++F      +VVS+T 
Sbjct: 485 SLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTA 544

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           MI G  + E+F +AL LF+EM  + + S N  IG                          
Sbjct: 545 MIAGYAQHEKFAEALNLFKEMQDQGIHSDN--IG-------------------------- 576

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                 AI A A I AL  G+  HA A       D+ VGN+L+S YA+CG + D+   FD
Sbjct: 577 ---FASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFD 633

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL-----------LGLL 348
           K+  ++ ++WN++I G+AQ+G  EEA+  F +M   G   N  T               L
Sbjct: 634 KIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKL 693

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
               H  +++ G+   S+ ++ +           ++ L ++ G   +A+   +++P    
Sbjct: 694 GKQIHAMIIKTGHD--SETEVSN----------VLITLYAKCGNIDDAERQFFEMPEKNE 741

Query: 409 IGFWKALLGGCQIHSN--VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           I  W A+L G   H +    L  F   + L + P  V ++V + +A S  G  D      
Sbjct: 742 IS-WNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHV-TFVGVLSACSHVGLVDEGIKYF 799

Query: 467 REMKE 471
           + M+E
Sbjct: 800 QSMRE 804



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 179/370 (48%), Gaps = 33/370 (8%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  S    F    QVF+ +   + VS  ++I   ++Q + ++A+ LF +M L  ++P  
Sbjct: 313 VTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDC 372

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  S++ + +++  L +GKQ H++A K G+ S++ +  A+LDLY+K S I+ A   F  
Sbjct: 373 VTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLS 432

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           T                                  NVV WN M+  Y       E+  +F
Sbjct: 433 TET-------------------------------ENVVLWNVMLVAYGLLDNLNESFKIF 461

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M  EG+ PN  T P  +   +++ A+ +G+  H   +K   + +V+V + LI  YAK 
Sbjct: 462 TQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKL 521

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G ++ +L +F +L E+++V+W A+I GYAQ+ +  EA+  F+ M+  GI  + +     +
Sbjct: 522 GKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAI 581

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC     + +G    +QA +           A +V L +R G+ ++A  F +D  F   
Sbjct: 582 SACAGIQALNQGQQIHAQACVSGYSDDLSVGNA-LVSLYARCGKVRDAY-FAFDKIFSKD 639

Query: 409 IGFWKALLGG 418
              W +L+ G
Sbjct: 640 NISWNSLISG 649



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 168/365 (46%), Gaps = 33/365 (9%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +S  +VFD +   + VS   ++   ++    EEA+ LF +M    + P+ + F SV+ +
Sbjct: 221 LNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSA 280

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T +E   +G+QLH    K G     +V +A++ LY +L +                   
Sbjct: 281 CTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGN------------------- 321

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                       F  A ++F  M  R+ VS+N++I G SQ G +++A+ LF +M  + L 
Sbjct: 322 ------------FIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLK 369

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T+   + A +++ AL +GK FH+ A+K     D+ +  +L+  Y KC  ++ +   
Sbjct: 370 PDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEF 429

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F      N+V WN ++  Y       E+ + F +M++ GI PN  T   +L  C+    V
Sbjct: 430 FLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAV 489

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + G    +Q  L+          + ++D+ ++ G+   A +    L  +  +  W A++ 
Sbjct: 490 DLGEQIHTQV-LKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIA 547

Query: 418 GCQIH 422
           G   H
Sbjct: 548 GYAQH 552



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 165/341 (48%), Gaps = 39/341 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE- 122
           VFDE+P   +     ++ RF         + LF RML   ++P E T+  V+      + 
Sbjct: 125 VFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDV 184

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             +  +++HA     G ++++FV + ++DLY K   +  A +VF+               
Sbjct: 185 PFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFD--------------- 229

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL KR+                 VSW AM+ G SQ+G  EEAV LF +M   G+ P    
Sbjct: 230 GLQKRDS----------------VSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYI 273

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A   +    +G+  H   +K    L+ +V N+L++ Y++ G+   +  VF+ + 
Sbjct: 274 FSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAML 333

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
           +R+ V++N++I G +Q G  ++A+E F++M ++ ++P+ VT+  LL AC+  G +  G  
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ 393

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            +SY  +A +    +L+      ++DL  +    K A EF 
Sbjct: 394 FHSYAIKAGMSSDIILE----GALLDLYVKCSDIKTAHEFF 430



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 11/203 (5%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D + +    FD++   + +S  ++I  FA+  H EEA+ LFS+M       + FT
Sbjct: 622 CGKVRDAYFA----FDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFT 677

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           FG  + ++  + ++ LGKQ+HA   K G  S   V + ++ LY K  +I++A R F +  
Sbjct: 678 FGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMP 737

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVN 226
             N +S+  M+ G  +      AL LF++M    V    V++  ++   S  G  +E + 
Sbjct: 738 EKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIK 797

Query: 227 LFIEMLRE--GLVPNHSTLPCAI 247
            F  M RE  GLVP      C +
Sbjct: 798 YFQSM-REVHGLVPKPEHYACVV 819



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 135/342 (39%), Gaps = 52/342 (15%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G +LH    K+G  + V +   ++DLYI    ++ A  VF+                   
Sbjct: 87  GWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFD------------------- 127

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                       EMP R +  WN ++  +         + LF  ML+E + P+  T    
Sbjct: 128 ------------EMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTY--- 172

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKL-------DVFVGNSLISFYAKCGSMEDSLLVFD 299
              A  +   G G     C  K   +         +FV N LI  Y K G +  +  VFD
Sbjct: 173 ---AGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFD 229

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            L +R+ V+W A++ G +Q+G  EEA+  F +M  +G+ P       +L AC      + 
Sbjct: 230 GLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKV 289

Query: 360 GYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           G         +   +   E Y C  +V L SR G F  A++    +     + +  +L+ 
Sbjct: 290 GEQLHGLVLKQGFSL---ETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSY-NSLIS 345

Query: 418 GC--QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           G   Q +S+  L  F    +  L P+ V+   +LS   SV  
Sbjct: 346 GLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGA 387



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 51/249 (20%), Positives = 90/249 (36%), Gaps = 31/249 (12%)

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
            FQ+    N     A+   YS        +N    M   G+  N  T    +    +   
Sbjct: 28  FFQKFLEHN----TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGW 83

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
              G   H   +K     +V +   L+  Y   G ++ ++ VFD++  R +  WN V+  
Sbjct: 84  FSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHR 143

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL----VEKGYSYFSQAKLED 371
           +         +  F RM    ++P+  T  G+L  C    +    VEK ++       E+
Sbjct: 144 FVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYEN 203

Query: 372 PGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG----------- 418
                   + C  ++DL  ++G    AK+    L     +  W A+L G           
Sbjct: 204 ------SLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVS-WVAMLSGLSQSGCEEEAV 256

Query: 419 ---CQIHSN 424
              CQ+H++
Sbjct: 257 LLFCQMHTS 265


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 163/465 (35%), Positives = 255/465 (54%), Gaps = 7/465 (1%)

Query: 36  VQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYL 95
           + K+   A+    + CG+      +  ++FDE  D N+V   TI+  +A+Q    EA+ +
Sbjct: 265 LNKVMVNALVDMYMKCGA----IDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAI 320

Query: 96  FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
              ML    RP   T  S I +S  L DL  GK  H +  + GL+    +G+ I+D+Y+K
Sbjct: 321 LDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMK 380

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
               E A RVF+   N  VVS+ ++  G ++    E A ++F ++P RN V WN MI G 
Sbjct: 381 CGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGL 440

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
            Q    E+A+ LF EM  EG+  +  T+     A   + A  + K  H    K     D+
Sbjct: 441 VQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDM 500

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
            +  +L+  +A+CG  + ++ VF+K+TER++  W A I   A  G GE A   F +M I 
Sbjct: 501 RLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQ 560

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFK 394
           G++P+ V  + +L AC+H G VE+G   FS   +ED G+  + EHY CMVDLL R+G  +
Sbjct: 561 GVKPDVVLFVQVLTACSHGGQVEQGLHIFSL--MEDHGISPQIEHYGCMVDLLGRAGLLR 618

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           EA + +  +P +P    W +LL  C++H NVE+  +AA RI  L P+    +V+LSN  +
Sbjct: 619 EAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYA 678

Query: 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
            AGKW +V+ +R  ++EKG+ +VPG S +++   +H F +GD +H
Sbjct: 679 SAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESH 723



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 199/427 (46%), Gaps = 52/427 (12%)

Query: 9   RSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSES------DKFSSVH 62
           R   +LN+L +LH        +  K  + ++  P+  T  V+ G+E       D      
Sbjct: 33  RCCKTLNQLKQLHC-------QITKNGLDQI--PSTLTKLVNAGAEIASPESLDYARKAF 83

Query: 63  QVFDE--VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
           ++F E    D  +    ++I  ++      EAI L+ RML+L + P+ +TF  V+   T 
Sbjct: 84  ELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTK 143

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           +     G Q+H    K+GL+ +VF+ + ++  Y +   ++   +VFE             
Sbjct: 144 IAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEG------------ 191

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                              M  RNVVSW ++I GY++  R +EAV+LF EM+  G+ P+ 
Sbjct: 192 -------------------MSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSS 232

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+ C I A A +  L MG+   A   +   KL+  + N+L+  Y KCG+++ +  +FD+
Sbjct: 233 VTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDE 292

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
             +RN+V +N ++  YA+ G   EA+   + M   G RP+ VT+L  + A     LV+  
Sbjct: 293 CVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ--LVDLF 350

Query: 361 YSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           Y       +   G+   +     ++D+  + G+ + A   ++DL  +  +  W +L  G 
Sbjct: 351 YGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACR-VFDLMSNKTVVSWNSLTAGF 409

Query: 420 QIHSNVE 426
             + +VE
Sbjct: 410 IRNGDVE 416


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 160/426 (37%), Positives = 241/426 (56%), Gaps = 5/426 (1%)

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STALEDLNLGKQLHAWATKVGLQSNVFVGS 147
           + EA   F  M      P+  T+ SV+ +      D+ LG Q+H      G+  ++ V +
Sbjct: 125 FGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVEN 184

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
           A++D+Y + + +E A ++F+     +VVS+T+++ GL +  R ++A  LF  MP R+ VS
Sbjct: 185 ALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVS 244

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           W AMI GY Q  R  EA+ +F EM    +  +  T+   I A A + AL MG+       
Sbjct: 245 WTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMS 304

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           +   K+D FVGN+LI  Y+KCGS+E +L VF  +  R+  TW A+I G A NG GEEAIE
Sbjct: 305 RQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIE 364

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVD 385
            F RM      P+ VT +G+L AC H GLV+KG  +F    + +   + P   HY C++D
Sbjct: 365 MFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFF--LSMRETYNIAPNVVHYGCIID 422

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445
           L  R+G+  EA + +  +P  P    W  LL  C++H N E+GE    R+L +DPE+ + 
Sbjct: 423 LFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTV 482

Query: 446 YVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           Y +LSN  +   +W++V  +R  + EKG+ + PGCS IE+   +H FV GD++H M+ EI
Sbjct: 483 YTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEI 542

Query: 506 YAVLRS 511
           Y  L S
Sbjct: 543 YCKLES 548



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 80/144 (55%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +      +F  +P+ + VS T +I  + +   + EA+ +F  M   N+   EFT  SVI 
Sbjct: 226 RVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVIT 285

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L +G+ +  + ++ G++ + FVG+A++D+Y K  SIE A  VF+D H+ +  +
Sbjct: 286 ACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFT 345

Query: 177 YTTMICGLLKRERFEDALKLFQEM 200
           +T +I GL      E+A+++F  M
Sbjct: 346 WTAIILGLAVNGYGEEAIEMFHRM 369



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 163/418 (38%), Gaps = 72/418 (17%)

Query: 90  EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAI 149
           E+A+  ++RML     P  +TF  ++ +          + +HA   K G+  N  V +++
Sbjct: 25  EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           +  Y        A  +                  L +RER         + P    V WN
Sbjct: 85  VTAYAAGGDGAAARAL------------------LSERER---------DTP----VVWN 113

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN-IAALGMGKSFHACAVK 268
           A+I G+++  R  EA   F++M R G  P   T    + A       + +G   H   V 
Sbjct: 114 ALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVG 173

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFD----------------------------- 299
                D+ V N+L+  YA+C  ME +  +FD                             
Sbjct: 174 SGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDL 233

Query: 300 --KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
             ++ ER+ V+W A+I GY Q  R  EA+E F  M+ + +  +  T++ ++ AC   G +
Sbjct: 234 FGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGAL 293

Query: 358 EKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           E G     Y S+  ++    +       ++D+ S+ G  + A +   D+        W A
Sbjct: 294 EMGEWVRVYMSRQGIKMDAFVG----NALIDMYSKCGSIERALDVFKDMHHRDKFT-WTA 348

Query: 415 LLGGCQIHSNVELG-EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           ++ G  ++   E   E   R I   +  D  +++ +  A + AG  D        M+E
Sbjct: 349 IILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRE 406


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 252/461 (54%), Gaps = 35/461 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG   D      ++FDE+P+ N++S  TIIG       Y EA  LF  M         
Sbjct: 177 VKCGMMID----ARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGS 232

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             F ++I +S  L  +  G+QLH+ + K G+  +VFV  A++D+Y K  SIE+A  VF+ 
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFD- 291

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                         +MP +  V WN++I GY+  G +EEA++++
Sbjct: 292 ------------------------------QMPEKTTVGWNSIIAGYALHGYSEEALSMY 321

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM   G+  ++ T    I   A +A+L   K  HA  V+    LD+    +L+  Y+K 
Sbjct: 322 YEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKW 381

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +ED+  VFD +  +N+++WNA+I GY  +GRG EA+E FERM   G+ PN VT L +L
Sbjct: 382 GRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVL 441

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+++GL ++G+  F     +     +  HYACM++LL R G   EA   + D PF P 
Sbjct: 442 SACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPT 501

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           +  W ALL  C++H N ELG+FAA ++  + PE +S+YV+L N  + +G+ +  + + + 
Sbjct: 502 VNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQT 561

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +K +G+  +P CSWIEIK + + F++GD+ H  + EIY  L
Sbjct: 562 LKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKL 602



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 187/403 (46%), Gaps = 65/403 (16%)

Query: 89  YEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
           Y EA+ LF  +L LN        T+ +++ +   L+ +   K++  +    GL  + ++ 
Sbjct: 111 YHEALELFE-ILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLR 169

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           + +L +++K   + +A R+F++    N++S+ T+I GL+    + +A +LF  M      
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMM------ 223

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
            W      +S  G       +F+ M+R               A+A +  +  G+  H+C+
Sbjct: 224 -WQ----DFSDAGS-----RMFVTMIR---------------ASAGLGLIFAGRQLHSCS 258

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           +K     DVFV  +LI  Y+KCGS+ED+  VFD++ E+  V WN++I GYA +G  EEA+
Sbjct: 259 LKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEAL 318

Query: 327 EFFERMRINGIRPNGVTLLGLLWAC-----------NHTGLVEKGYSYFSQAKLEDPGML 375
             +  MR +G++ +  T   ++  C            H GLV  G+     A        
Sbjct: 319 SMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVAN------- 371

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS-NVELGEFAARR 434
                  +VDL S+ GR ++AK     +P    I  W AL+ G   H   VE  E   R 
Sbjct: 372 -----TALVDLYSKWGRIEDAKHVFDMMPHKNVIS-WNALIAGYGNHGRGVEAVEMFERM 425

Query: 435 IL-ALDPEDVSSYVMLSNALSVAG----KWDNVSNIRREMKEK 472
           +   + P  V+   +LS A S +G     W+   ++ R+ K K
Sbjct: 426 LHEGMVPNHVTFLAVLS-ACSYSGLSDRGWEIFESMSRDHKIK 467



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 9/198 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V   S+  +      VFD +P  NV+S   +I  +       EA+ +F RML   + 
Sbjct: 372 TALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV 431

Query: 106 PSEFTFGSVIP--SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           P+  TF +V+   S + L D    +   + +    ++      + +++L  +   ++EA 
Sbjct: 432 PNHVTFLAVLSACSYSGLSDRGW-EIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAF 490

Query: 164 RVFEDT-HNPNVVSYTTMICGLLKRERFE----DALKLFQEMPHRNVVSWNAMIGGYSQT 218
            + +D    P V  +  ++      + FE     A KL+   P + + ++  ++  Y+++
Sbjct: 491 ALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEK-LSNYVVLLNIYNRS 549

Query: 219 GRNEEAVNLFIEMLREGL 236
           GR EEA  +   + R GL
Sbjct: 550 GRLEEAAAVIQTLKRRGL 567


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 173/515 (33%), Positives = 272/515 (52%), Gaps = 47/515 (9%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           C S ++L K  ++H+ A    I+             ++   +   ++ D  +   +VF+ 
Sbjct: 353 CGSLVALEKGRQVHAYAIKVNIDNDDF---------VKNGLIDMYAKCDSLTDARKVFNL 403

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +  +++VS   +I  +++Q    EA+ LF  M L    P+   F S++  S +L  L L 
Sbjct: 404 MAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELS 463

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            Q+H    K G+  + F GSA++D+Y K S + +A  VFE                    
Sbjct: 464 NQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFE-------------------- 503

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                      E+  +++V W AM  GY+Q   NEE++ L+  +    L PN  T    I
Sbjct: 504 -----------EIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVI 552

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            AA+NIA+L  G+ FH   +K     D FV N+L+  YAK GS+E++   F     ++  
Sbjct: 553 TAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTA 612

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF--- 364
            WN++I  YAQ+G  E+A++ FE M + G++PN VT +G+L AC+HTGL++ G+ +F   
Sbjct: 613 CWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSM 672

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
           SQ  +E PG+   EHY CMV LL R+G+  EAKEF+  +P       W++LL  C++  N
Sbjct: 673 SQFGIE-PGI---EHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSACRVSGN 728

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           VELG +AA   ++ +P D  SYV+LSN  +  G W NV  +R +M   G+ + PGCSWIE
Sbjct: 729 VELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLREKMDISGVVKEPGCSWIE 788

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           + +++H F+  D  H  +  I  VL +   QI+ F
Sbjct: 789 VNNEIHKFIAKDTAHRDSAPISLVLDNLLLQIKGF 823



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 187/398 (46%), Gaps = 41/398 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD +      + TTII  ++KQ   + ++ LF +M   ++ P ++   SV+ +   L+ 
Sbjct: 198 LFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKF 257

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+H +  + G+  +V + +  +D Y K   ++                       
Sbjct: 258 LEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQ----------------------- 294

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            L R       KLF  M  +NVVSW  +I G  Q   + +A++LF+EM R G  P+    
Sbjct: 295 -LGR-------KLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGC 346

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + +  ++ AL  G+  HA A+K     D FV N LI  YAKC S+ D+  VF+ +  
Sbjct: 347 TSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAA 406

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN---GVTLLGLLWACNHTGLVEKG 360
            ++V++NA+I GY++  +  EA++ F  MR++   P     V+LLG+  +  H  L  + 
Sbjct: 407 IDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQI 466

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           +    +  +     L     + ++D+ S+  R  +A+  +++   D  I  W A+  G  
Sbjct: 467 HGLIIKYGVS----LDEFAGSALIDVYSKCSRVGDAR-LVFEEIQDKDIVVWTAMFSGYT 521

Query: 421 IHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVA 456
             S  E  L  +   ++  L P + +   +++ A ++A
Sbjct: 522 QQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIA 559



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 159/342 (46%), Gaps = 41/342 (11%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR-MLLLNIRPSEFTFGSVIPSSTA 120
           +++FD +   N+V+ ++++  +    H  EA+ LF + M   N +P+E+   SV+ + T 
Sbjct: 94  NKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQ 153

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
              LN   Q+H    K G   +V+V ++++D Y K + I++A  +F+        ++TT+
Sbjct: 154 FGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTI 213

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PN 239
           I G  K+ R + +LKLF +M                                +EG V P+
Sbjct: 214 IAGYSKQGRSQVSLKLFDQM--------------------------------KEGHVCPD 241

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
              L   + A   +  L  GK  H   ++    +DV + N  I FY KC  ++    +FD
Sbjct: 242 KYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFD 301

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ ++N+V+W  VI G  QN    +A++ F  M   G  P+      +L +C     +EK
Sbjct: 302 RMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEK 361

Query: 360 G---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           G   ++Y  +  +++   +K      ++D+ ++     +A++
Sbjct: 362 GRQVHAYAIKVNIDNDDFVKNG----LIDMYAKCDSLTDARK 399



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 115/255 (45%), Gaps = 3/255 (1%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           H  ++    T++    K      A KLF  M H+N+V+W++M+  Y+      EA+ LF+
Sbjct: 70  HKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFV 129

Query: 230 EMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           + +R     PN   L   + A      L      H   VK     DV+V  SLI FY K 
Sbjct: 130 QFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKH 189

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             ++D+ L+FD L  +   TW  +I GY++ GR + +++ F++M+   + P+   L  +L
Sbjct: 190 ACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVL 249

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC     +E G        L    ++        +D   +  + +  ++ L+D   D  
Sbjct: 250 SACLMLKFLEGGKQIHCYV-LRSGIVMDVSMVNGFIDFYFKCHKVQLGRK-LFDRMVDKN 307

Query: 409 IGFWKALLGGCQIHS 423
           +  W  ++ GC  +S
Sbjct: 308 VVSWTTVIAGCMQNS 322


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 269/503 (53%), Gaps = 37/503 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHH---------------------- 88
           C S      S  +VFD++P+ +  S TT++  + K                         
Sbjct: 197 CASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNA 256

Query: 89  ----------YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
                     Y+EA+ +  RM+   I   EFT+ SVI +      L LGKQ+HA+  +  
Sbjct: 257 MISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE 316

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
             S  F  S ++ LY K     EA  +FE     ++VS+  ++ G +      +A  +F+
Sbjct: 317 DFSFHFDNS-LVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFK 375

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           EM  +N++SW  MI G ++ G  EE + LF  M REG  P       AI + A + A   
Sbjct: 376 EMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCN 435

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+ FHA  VK      +  GN+LI+ YAKCG +E++  VF  +   + V+WNA+I    Q
Sbjct: 436 GQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQ 495

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP- 377
           +G G EA++ +E M   GIRP+ +T L +L AC+H GLV++G  YF+   +E    + P 
Sbjct: 496 HGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNS--METVYRIPPG 553

Query: 378 -EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436
            +HYA ++DLL RSG+F EA+  +  LPF P    W+ALL GC++H N+ELG  AA ++ 
Sbjct: 554 ADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF 613

Query: 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGD 496
            L PE   +Y++LSN  +  G+W+ V+ +R+ M+++G+ +   CSWIE++++VH F+  D
Sbjct: 614 GLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDD 673

Query: 497 RNHHMNDEIYAVLRSCTEQIREF 519
            +H   + +Y  L+   +++R  
Sbjct: 674 TSHPEAEAVYKYLQDLGKEMRRL 696



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 203/443 (45%), Gaps = 24/443 (5%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           RT  VS    S   +    VF+E P    + V    +I  F+  +    AI LF +M   
Sbjct: 83  RTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHE 142

Query: 103 NIRPSEFTFGSVIPS-STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS--- 158
             +P +FT+ SV+   +  ++D     Q HA A K G      V +A++ +Y + +S   
Sbjct: 143 GFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPS 202

Query: 159 -IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYS 216
            +  A +VF+D    +  S+TTM+ G +K   F+   +L + M     +V++NAMI GY 
Sbjct: 203 LLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYV 262

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
             G  +EA+ +   M+  G+  +  T P  I A AN   L +GK  HA  ++        
Sbjct: 263 NCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLR-REDFSFH 321

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
             NSL++ Y KCG   ++  +F+K+  +++V+WNA++ GY  +G   EA   F+ M+   
Sbjct: 322 FDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKN 381

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS--GRFK 394
           I    + + GL       G  E+G   FS  K E     +P  YA    + S +  G + 
Sbjct: 382 ILSWMIMISGLA----ENGFGEEGLKLFSCMKREG---FEPCDYAFSGAIKSCAVLGAYC 434

Query: 395 EAKEF---LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451
             ++F   L  + FD  +    AL+    +++   + E A +    +   D  S+  L  
Sbjct: 435 NGQQFHAQLVKIGFDSSLSAGNALI---TMYAKCGVVEEAQQVFRTMPCLDSVSWNALIA 491

Query: 452 ALSVAGKWDNVSNIRREMKEKGM 474
           AL   G      ++  EM +KG+
Sbjct: 492 ALGQHGHGVEAVDVYEEMLKKGI 514



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 148/339 (43%), Gaps = 52/339 (15%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L L + +H      G Q +  + + ++D+Y K S ++ A ++F++   P+ ++ TTM+ G
Sbjct: 30  LQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSG 89

Query: 184 LLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                    A  +F+E P   R+ V +NAMI G+S       A+NLF +M  EG  P+  
Sbjct: 90  YCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDF 149

Query: 242 TLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS----MEDSLL 296
           T    +   A +         FHA A+K        V N+L+S Y++C S    +  +  
Sbjct: 150 TYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARK 209

Query: 297 VFDKLTERN--------------------------------IVTWNAVICGYAQNGRGEE 324
           VFD + E++                                +V +NA+I GY   G  +E
Sbjct: 210 VFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQE 269

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--- 381
           A+E   RM  +GI  +  T   ++ AC +  L++ G       K     +L+ E ++   
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLG-------KQVHAYVLRREDFSFHF 322

Query: 382 --CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              +V L  + G+F EA+     +P    +  W ALL G
Sbjct: 323 DNSLVTLYYKCGKFNEARAIFEKMPAKDLVS-WNALLSG 360


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 166/518 (32%), Positives = 273/518 (52%), Gaps = 74/518 (14%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N V  T ++  +A+     +A+  F  M    +  +++TF +++ + +++     G+Q+H
Sbjct: 229 NHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVH 288

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSI-------------------------------E 160
            +  K G  SNV+V SA++D+Y K   +                               E
Sbjct: 289 GFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEE 348

Query: 161 EATRVFEDTHNPN--VVSYT---------------TMICGLLKRERFED----------- 192
           EA R+F++ H  N  +  YT                 + GL+ +  FE+           
Sbjct: 349 EALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDM 408

Query: 193 ---------ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                    A  +F++M  ++V+SW +++ GY+Q   +EE++ +F +M   G+ P+   +
Sbjct: 409 YAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIV 468

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A +  L  GK  H   +K   +    V NSL++ YAKCG ++D+  +F  +  
Sbjct: 469 ASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQV 528

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           ++++TW A+I GYAQNG+G  +++F++ M  +G RP+ +T +GLL+AC+H GLV++G  Y
Sbjct: 529 KDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKY 588

Query: 364 FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F Q        PG   PEHYACM+DL  RSG+  EAK+ L  +   P    WK+LL  C+
Sbjct: 589 FQQMNKVYGIKPG---PEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACR 645

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H N+EL E AA  +  L+P +   YVMLSN  S + KW++V+ IR+ MK KG+ + PGC
Sbjct: 646 VHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGC 705

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           SW+EI S+V+ F++ DR H    EIY  +     +I+E
Sbjct: 706 SWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKE 743



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 170/354 (48%), Gaps = 37/354 (10%)

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150
           EA  LF  M L   + S+FT GSV+   ++L  +  G+ +H +  K G + NVFV + ++
Sbjct: 145 EAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLV 204

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
           D+Y K   + EA  +F+               GL              E   +N V W A
Sbjct: 205 DMYAKCKCVSEAEFLFK---------------GL--------------EFDRKNHVLWTA 235

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           M+ GY+Q G   +AV  F  M  +G+  N  T P  + A +++ A   G+  H   VK  
Sbjct: 236 MVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSG 295

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
              +V+V ++L+  YAKCG ++++  + + + + ++V+WN+++ G+ ++G  EEA+  F+
Sbjct: 296 FGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFK 355

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG-YSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
            M    ++ +  T   +L  C    +  K  +    +   E+  ++       +VD+ ++
Sbjct: 356 NMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNA----LVDMYAK 411

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGG-CQIHSNVE-LGEFAARRILALDPE 441
           +G    A   +++   +  +  W +L+ G  Q +S+ E L  F   R+  ++P+
Sbjct: 412 TGDMDCAYT-VFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPD 464



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 26/298 (8%)

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
            T      +++  + +L+   K   + +A ++F+     +  S+ TMI   +   R  +A
Sbjct: 56  TTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEA 115

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
            +LF     ++ ++W+++I GY + G   EA +LF  M  EG   +  TL   +   +++
Sbjct: 116 RELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSL 175

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL--TERNIVTWNA 311
             +  G+  H   VK   + +VFV   L+  YAKC  + ++  +F  L    +N V W A
Sbjct: 176 GLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTA 235

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN-----------HTGLVEKG 360
           ++ GYAQNG G +A+EFF  M   G+  N  T   +L AC+           H  +V+ G
Sbjct: 236 MVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSG 295

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +   S   ++          + +VD+ ++ G  K AK  L  +  D  +  W +L+ G
Sbjct: 296 FG--SNVYVQ----------SALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVG 340



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/285 (20%), Positives = 129/285 (45%), Gaps = 37/285 (12%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +++      + VF+++ + +V+S T+++  +A+ + +EE++ +F  M +  + P +F   
Sbjct: 410 AKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVA 469

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ +   L  L  GKQ+H    K GL+ +  V ++++ +Y K                 
Sbjct: 470 SILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAK----------------- 512

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG L     +DA  +F  M  ++V++W A+I GY+Q G+   ++  +  M+
Sbjct: 513 ---------CGCL-----DDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMV 558

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSM 291
             G  P+  T    + A ++   +  G+ +     K  G K        +I  + + G +
Sbjct: 559 SSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKL 618

Query: 292 EDSLLVFDKLTER-NIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           +++  + D++  + +   W +++       R  E +E  ER   N
Sbjct: 619 DEAKQLLDQMDVKPDATVWKSLLSA----CRVHENLELAERAATN 659


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  305 bits (780), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 179/583 (30%), Positives = 295/583 (50%), Gaps = 103/583 (17%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C S   L K ++LHS    YL +   +S   +E   +    V CG       +   
Sbjct: 250 LLAACASLGDLQKGTQLHS----YLFKAGMSSDYIMEGSLLDL-YVKCGD----VETALV 300

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+     NVV    I+  F + +   ++  LF +M    IRP++FT+  ++ + T   +
Sbjct: 301 IFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGE 360

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           ++LG+Q+H+ + K G +S+++V   ++D+Y K   +E+A RV E     +VVS+T+MI G
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420

Query: 184 LLKRERFEDALKLFQEMPH---------------------------------------RN 204
            ++ E  +DAL  F+EM                                          +
Sbjct: 421 YVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGD 480

Query: 205 VVSWNAMIGGYSQTGR-------------------------------NEEAVNLFIEMLR 233
           V  WNA++  Y++ GR                               +EEA+ +F+ M +
Sbjct: 481 VSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQ 540

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+  N  T   A+ A+AN+A +  GK  HA  +K     +  VGN+LIS Y KCGS ED
Sbjct: 541 SGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFED 600

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + + F +++ERN V+WN +I   +Q+GRG EA++FF++M+                    
Sbjct: 601 AKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQMK-------------------- 640

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
               ++G SYF     +     +P+HYAC++D+  R+G+   AK+F+ ++P       W+
Sbjct: 641 ----KEGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWR 696

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LL  C++H N+E+GE AA+ +L L+P D +SYV+LSNA +V GKW N   +R+ M+++G
Sbjct: 697 TLLSACKVHKNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDRG 756

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           + + PG SWIE+K+ VH F  GDR H + ++IY  L    +++
Sbjct: 757 VRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRV 799



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 185/396 (46%), Gaps = 43/396 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+E+   + VS   ++  +A+    EEA++L+ +M    + P+ +   SV+ S T  E
Sbjct: 98  RVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAE 157

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               G+ +HA   K G  S  FVG+A++ LY++  S   A RVF D              
Sbjct: 158 LFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYD-------------- 203

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            MPHR+ V++N +I G++Q    E A+ +F EM   GL P+  T
Sbjct: 204 -----------------MPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVT 246

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++  L  G   H+   K     D  +  SL+  Y KCG +E +L++F+   
Sbjct: 247 ISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGN 306

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             N+V WN ++  + Q     ++ E F +M+  GIRPN  T   +L  C  TG ++ G  
Sbjct: 307 RTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQ 366

Query: 363 YFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             S   L      + + Y    ++D+ S+ G  ++A+  L ++  +  +  W +++ G  
Sbjct: 367 IHS---LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMIAGYV 422

Query: 421 IHSNVE--LGEFAARRILALDPEDVSSYVMLSNALS 454
            H   +  L  F   +   + P+++     L++A+S
Sbjct: 423 QHEYCKDALAAFKEMQKCGIWPDNIG----LASAIS 454



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 175/377 (46%), Gaps = 39/377 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  + CGS    F    +VF ++P  + V+  T+I   A+  H E A+ +F  M   
Sbjct: 183 ALITLYLRCGS----FRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSS 238

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P   T  S++ +  +L DL  G QLH++  K G+ S+  +  ++LDLY+K   +E A
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETA 298

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             +F      N+ + T                         NVV WN ++  + Q     
Sbjct: 299 LVIF------NLGNRT-------------------------NVVLWNLILVAFGQINDLA 327

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           ++  LF +M   G+ PN  T PC +        + +G+  H+ +VK   + D++V   LI
Sbjct: 328 KSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLI 387

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y+K G +E +  V + L E+++V+W ++I GY Q+   ++A+  F+ M+  GI P+ +
Sbjct: 388 DMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNI 447

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLED-PGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
            L   +  C     + +G    ++  +    G +    +  +V+L +R GR +EA     
Sbjct: 448 GLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSI--WNALVNLYARCGRIREAFSSFE 505

Query: 402 DLPFDPGIGFWKALLGG 418
           ++     I  W  L+ G
Sbjct: 506 EIEHKDEIT-WNGLVSG 521



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 141/291 (48%), Gaps = 39/291 (13%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++HA A   GL  +  VG+ ++DLY K   +  A RVFE                     
Sbjct: 63  EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFE--------------------- 101

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     E+  R+ VSW AM+ GY+Q G  EEA+ L+ +M R G+VP    L   + 
Sbjct: 102 ----------ELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLS 151

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           +         G+S HA   K     + FVGN+LI+ Y +CGS   +  VF  +  R+ VT
Sbjct: 152 SCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVT 211

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
           +N +I G+AQ   GE A+E FE M+ +G+ P+ VT+  LL AC   G ++KG   +SY  
Sbjct: 212 FNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLF 271

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +A +    +++      ++DL  + G  + A   +++L     +  W  +L
Sbjct: 272 KAGMSSDYIME----GSLLDLYVKCGDVETAL-VIFNLGNRTNVVLWNLIL 317



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 119/266 (44%), Gaps = 17/266 (6%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  R   S    + G+       + ++LF +  R+     H  L     A A  A  G G
Sbjct: 1   MTRRGAASLGWSLAGFLAQEDPAKVLSLFADKARQ-----HGGLGPLDFACALRACRGNG 55

Query: 260 KSF------HACAV-KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           + +      HA A+ + LGK D  VGN LI  Y+K G +  +  VF++L+ R+ V+W A+
Sbjct: 56  RRWQVVPEIHAKAITRGLGK-DRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAM 114

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           + GYAQNG GEEA+  + +M   G+ P    L  +L +C    L  +G S  +Q   +  
Sbjct: 115 LSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQ-- 172

Query: 373 GMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI-HSNVELGEF 430
           G          ++ L  R G F+ A+   YD+P    + F   + G  Q  H    L  F
Sbjct: 173 GFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIF 232

Query: 431 AARRILALDPEDVSSYVMLSNALSVA 456
              +   L P+ V+   +L+   S+ 
Sbjct: 233 EEMQSSGLSPDCVTISSLLAACASLG 258


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 158/461 (34%), Positives = 270/461 (58%), Gaps = 12/461 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  +      +VFD++   ++VS   +IG +     + EA+ L+ ++ +   + ++ T
Sbjct: 255 CGSSHE----AREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKAT 310

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F S++ + ++++ L  G+ +H+   + GL S V V +A++++Y K  S+EEA +VF    
Sbjct: 311 FVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK 370

Query: 171 NPNVVSYTTMICGLLKRERFEDALK---LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           N + V+++T+I         +DA K   +F  +  R+ +SWNAMI  Y Q G    A+ +
Sbjct: 371 NRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKI 430

Query: 228 FIEML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           F EM    GL P+  T    + A A++  L   K+ HA   +   + +V V N+LI+ YA
Sbjct: 431 FREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYA 490

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           +CGS+E++  +F    E+ +V+W A++  ++Q GR  EA++ F+ M + G++P+ VT   
Sbjct: 491 RCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTS 550

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +L+ C H G +E+G+ YF+   + +   L P  +H+A MVDLL RSGR  +AKE L  +P
Sbjct: 551 ILFVCTHGGSLEQGWRYFTD--MAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMP 608

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
           F+P    W   L  C+IH  +ELGE AA R+  LDP   + Y+ +SN  +  G W+ V++
Sbjct: 609 FEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVAS 668

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           +R++M+E+G+ ++PG S+IE+  K+H F +G + H   DEI
Sbjct: 669 VRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEI 709



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 172/375 (45%), Gaps = 45/375 (12%)

Query: 49  VSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP 106
           +S   + D       VF+ +     NVVS   +I  +A+  H  EA+ L+ RM L  +  
Sbjct: 49  ISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGT 108

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
              TF SV+ + ++L     G+++H      GL S   + +A++ +Y +  S+ +A R  
Sbjct: 109 DHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKR-- 163

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                                        +FQ +  R+  SWNA+I  +SQ+G    A+ 
Sbjct: 164 -----------------------------MFQSLQTRDETSWNAVILAHSQSGDWSGALR 194

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           +F EM +  + PN +T    I   +    L  G+  HA  V      D+ V  +LI+ Y 
Sbjct: 195 IFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYG 253

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCGS  ++  VFDK+ +R++V+WN +I  Y  NG   EA+E ++++ + G +    T + 
Sbjct: 254 KCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVS 313

Query: 347 LLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           +L AC+    + +G   +S+  +  L+    +       +V++ ++ G  +EA++    +
Sbjct: 314 ILGACSSVKALAQGRLVHSHILERGLDSEVAVA----TALVNMYAKCGSLEEARKVFNAM 369

Query: 404 PFDPGIGFWKALLGG 418
                +  W  L+G 
Sbjct: 370 KNRDAVA-WSTLIGA 383



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/431 (22%), Positives = 187/431 (43%), Gaps = 80/431 (18%)

Query: 57  KFSSV---HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +F SV    ++F  +   +  S   +I   ++   +  A+ +F  M   +++P+  T+ +
Sbjct: 154 RFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKC-DVKPNSTTYIN 212

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VI   +  E L  G+++HA     G  +++ V +A++++Y K  S  EA  VF+     +
Sbjct: 213 VISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRD 272

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           +VS+  MI   +    F +AL+L+Q++                                 
Sbjct: 273 MVSWNVMIGCYVLNGDFHEALELYQKLD-------------------------------M 301

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG     +T    + A +++ AL  G+  H+  ++     +V V  +L++ YAKCGS+E+
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEE 361

Query: 294 ----------------------------------SLLVFDKLTERNIVTWNAVICGYAQN 319
                                             +  VFD+L  R+ ++WNA+I  Y QN
Sbjct: 362 ARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQN 421

Query: 320 GRGEEAIEFFERMR-INGIRPNGVTLLGLLWACNHTGL---VEKGYSYFSQAKLEDPGML 375
           G    A++ F  M    G++P+ VT + +L AC   G    V+  ++  S+++LE   ++
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVV 481

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAAR 433
                  ++++ +R G  +EA E L+    +  +  W A++     +      L  F   
Sbjct: 482 TNT----LINMYARCGSLEEA-ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEM 536

Query: 434 RILALDPEDVS 444
            +  + P+DV+
Sbjct: 537 DLEGVKPDDVT 547



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 41/251 (16%)

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
           ++ +P   TF +V+ S ++  D+  G+ LH        + +  VG+A++ +Y K  S+ +
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 162 ATRVFE--DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
           A  VFE  D    NVVS+                               NAMI  Y+Q G
Sbjct: 61  ARSVFESMDWRQRNVVSW-------------------------------NAMIAAYAQNG 89

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF--V 277
            + EA+ L+  M  +GL  +H T    + A +++A    G+  H     F   LD F  +
Sbjct: 90  HSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRV--FYSGLDSFQSL 144

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N+L++ YA+ GS+ D+  +F  L  R+  +WNAVI  ++Q+G    A+  F+ M+ + +
Sbjct: 145 ANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-V 203

Query: 338 RPNGVTLLGLL 348
           +PN  T + ++
Sbjct: 204 KPNSTTYINVI 214



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P++ T    + + ++   +  G++ H        + D  VGN+LIS Y KC S+ D+  V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 298 FDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           F+ +   +RN+V+WNA+I  YAQNG   EA+  + RM + G+  + VT + +L AC+
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 125/291 (42%), Gaps = 45/291 (15%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           L   S + +LA   L+ +           A+ T  V+  ++        +VF+ + + + 
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 74  VSATTIIGRFAKQHHYEE----------------------------------AIYLFSRM 99
           V+ +T+IG +A   + ++                                  A+ +F  M
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREM 434

Query: 100 L-LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
                ++P   TF +V+ +  +L  L+  K LHA  ++  L+SNV V + ++++Y +  S
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGG 214
           +EEA R+F       VVS+T M+    +  R+ +AL LFQEM    V    V++ +++  
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFV 554

Query: 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM-GKSFHA 264
            +  G  E+    F +M        H+  P A   AA +  LG  G+ F A
Sbjct: 555 CTHGGSLEQGWRYFTDM-----AELHALAPTADHFAAMVDLLGRSGRLFDA 600


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 158/486 (32%), Positives = 280/486 (57%), Gaps = 51/486 (10%)

Query: 53  SESDKFSSVHQVF-----DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           ++S KF +  ++F     + +P L+V++ + +I  +A++ + +EA+  F +M+L    P+
Sbjct: 336 TQSGKFGAAFELFKNMRKENIP-LDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPN 394

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS------------NVFVGSAILDLYIK 155
             T  S++ +  +L  L+ G + HA++ K  L S            ++ V +A++D+Y K
Sbjct: 395 SVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSK 454

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
             S + A  +F                 + +RER              NVV+W  MIGGY
Sbjct: 455 CRSFKAARTIFNS---------------IPRRER--------------NVVTWTVMIGGY 485

Query: 216 SQTGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LG 271
           +Q G + +A+ LF EM+ +   + PN  T+ C ++A A++++L MGK  HA   +     
Sbjct: 486 AQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYE 545

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
               FV N LI  Y+KCG ++ +  VFD + +RN V+W +++ GY  +GRG+EA++ F++
Sbjct: 546 SSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDK 605

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           M+  G  P+ ++ L LL+AC+H+G+V++G  YF   + +   +   +HYAC++DLL+RSG
Sbjct: 606 MQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSG 665

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451
           R  +A + + ++P +P    W ALL  C++HSNVEL E+A  +++++  E+  SY ++SN
Sbjct: 666 RLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISN 725

Query: 452 ALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
             + A +W +V+ IR+ MK+ G+ + PGCSW++ K     F  GDR+H ++ EIY++L  
Sbjct: 726 IYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLER 785

Query: 512 CTEQIR 517
              +I+
Sbjct: 786 LIGRIK 791



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 211/431 (48%), Gaps = 37/431 (8%)

Query: 53  SESDKFSSVHQVFDEVPDL---NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL------N 103
           S S        VFDE+      +V+S  +I+    K  +   A+ LFS M  +      N
Sbjct: 195 SRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATN 254

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            R    +  +++P+  +L+ L   K++H++A + G  ++ FV +A++D Y K  S+++A 
Sbjct: 255 ERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAV 314

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN----VVSWNAMIGGYSQTG 219
            VF      +VVS+  M+ G  +  +F  A +LF+ M   N    V++W+A+I GY+Q G
Sbjct: 315 NVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRG 374

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK----------- 268
             +EA++ F +M+  G  PN  T+   + A A++ AL  G   HA ++K           
Sbjct: 375 YGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFG 434

Query: 269 -FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGEEA 325
                 D+ V N+LI  Y+KC S + +  +F+ +   ERN+VTW  +I GYAQ G   +A
Sbjct: 435 GDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDA 494

Query: 326 IEFFERM--RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHY 380
           ++ F  M  +   + PN  T+  +L AC H   +  G   ++Y ++    +  +    + 
Sbjct: 495 LKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVAN- 553

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILAL 438
            C++D+ S+ G    A+     +P    +  W +++ G  +H   +  L  F   +    
Sbjct: 554 -CLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGYGMHGRGKEALDIFDKMQKAGF 611

Query: 439 DPEDVSSYVML 449
            P+D+S  V+L
Sbjct: 612 VPDDISFLVLL 622



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/488 (24%), Positives = 208/488 (42%), Gaps = 111/488 (22%)

Query: 3   QLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDS-------------- 48
            LL  CRS   +N + ++H     Y + +  AS+  +  P + + S              
Sbjct: 36  SLLKECRS---VNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVAS 92

Query: 49  -VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
            ++CG+ SD  S + +V   VP    V    ++    ++   + AI +  RML    +P 
Sbjct: 93  YLACGATSDALSVLERV---VPS-PAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPD 148

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            FT    + +   L     G   H      G +SNVFV +A++ +Y +  S+E+A+ VF+
Sbjct: 149 HFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFD 208

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           +                + R+  +D            V+SWN+++  + +      A++L
Sbjct: 209 E----------------ITRKGIDD------------VISWNSIVAAHVKGSNPRTALDL 240

Query: 228 FIEML----------REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
           F EM           R  ++   + LP    A A++ AL   K  H+ A++     D FV
Sbjct: 241 FSEMTTIVHEKATNERSDIISIVNILP----ACASLKALPQTKEIHSYAIRNGTFADAFV 296

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN--------------------------- 310
            N+LI  YAKCGSM+D++ VF+ +  +++V+WN                           
Sbjct: 297 CNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENI 356

Query: 311 --------AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
                   AVI GYAQ G G+EA++ F++M + G  PN VT++ LL AC   G + +G  
Sbjct: 357 PLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGME 416

Query: 361 -YSYFSQAKLEDPGMLKPEH--------YACMVDLLSRSGRFKEAKEFLYDLP-FDPGIG 410
            ++Y  +  L                  +  ++D+ S+   FK A+     +P  +  + 
Sbjct: 417 THAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVV 476

Query: 411 FWKALLGG 418
            W  ++GG
Sbjct: 477 TWTVMIGG 484


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 248/468 (52%), Gaps = 35/468 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTII---GRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           ++ D  +   +VFD     +VV    +I    R   Q    EA+ +F  M    IRPS  
Sbjct: 396 AKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLL 455

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF S++ +S +L  L L KQ+H    K GL  ++F GSA++D+Y                
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSN-------------- 501

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       C  LK  R      +F EM  +++V WN+M  GY Q   NEEA+NLF+
Sbjct: 502 ------------CYCLKDSRL-----VFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFL 544

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           E+      P+  T    + AA N+A++ +G+ FH   +K   + + ++ N+L+  YAKCG
Sbjct: 545 ELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCG 604

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           S ED+   FD    R++V WN+VI  YA +G G++A++  E+M   GI PN +T +G+L 
Sbjct: 605 SPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLS 664

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           AC+H GLVE G   F +  L      + EHY CMV LL R+GR  +A+E +  +P  P  
Sbjct: 665 ACSHAGLVEDGLKQF-ELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAA 723

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W++LL GC    NVEL E AA   +  DP+D  S+ MLSN  +  G W     +R  M
Sbjct: 724 IVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERM 783

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           K +G+ + PG SWI I  +VH+F++ D++H   ++IY VL     QIR
Sbjct: 784 KVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 162/321 (50%), Gaps = 38/321 (11%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG    +  + H++F+ +P+ N++S TT++  + +   ++EA+ LF+ M    ++P  
Sbjct: 295 VKCG----RVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDM 350

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +   S++ S  +L  L  G Q+HA+  K  L ++ +V ++++D+Y K   + +A +VF+ 
Sbjct: 351 YACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDI 410

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN---EEAV 225
               +VV +  M                               I GYS+ G      EA+
Sbjct: 411 FAAADVVLFNAM-------------------------------IEGYSRLGTQWELHEAL 439

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           N+F +M    + P+  T    + A+A++ +LG+ K  H    K+   LD+F G++LI  Y
Sbjct: 440 NIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVY 499

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           + C  ++DS LVFD++  +++V WN++  GY Q    EEA+  F  ++++  RP+  T  
Sbjct: 500 SNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFA 559

Query: 346 GLLWACNHTGLVEKGYSYFSQ 366
            ++ A  +   V+ G  +  Q
Sbjct: 560 NMVTAAGNLASVQLGQEFHCQ 580



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 144/290 (49%), Gaps = 34/290 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P+ + V+ TT+I    K      ++ LF +++  N+ P  +   +V+ + + L  
Sbjct: 205 VFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPF 264

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+HA   + GL+ +  + + ++D Y+K                          CG
Sbjct: 265 LEGGKQIHAHILRYGLEMDASLMNVLIDSYVK--------------------------CG 298

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                R   A KLF  MP++N++SW  ++ GY Q   ++EA+ LF  M + GL P+    
Sbjct: 299 -----RVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYAC 353

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + A++ ALG G   HA  +K     D +V NSLI  YAKC  + D+  VFD    
Sbjct: 354 SSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAA 413

Query: 304 RNIVTWNAVICGYAQNGRG---EEAIEFFERMRINGIRPNGVTLLGLLWA 350
            ++V +NA+I GY++ G      EA+  F  MR   IRP+ +T + LL A
Sbjct: 414 ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 178/364 (48%), Gaps = 46/364 (12%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHH--YEEAIYLFSRMLLLNI-RPSEFTFGSVIPSST 119
           +VF+++P+ N+VS +T++   A  HH  YEE++ +F          P+E+   S I + +
Sbjct: 100 KVFEKMPERNLVSWSTMVS--ACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACS 157

Query: 120 ALEDLN--LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            L+     +  QL ++  K G   +V+VG+ ++D Y+K  +I+ A  VF           
Sbjct: 158 GLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVF----------- 206

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                         DAL      P ++ V+W  MI G  + GR+  ++ LF +++ + +V
Sbjct: 207 --------------DAL------PEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVV 246

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+   L   + A + +  L  GK  HA  +++  ++D  + N LI  Y KCG +  +  +
Sbjct: 247 PDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKL 306

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC---NHT 354
           F+ +  +NI++W  ++ GY QN   +EA+E F  M   G++P+      +L +C   +  
Sbjct: 307 FNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHAL 366

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G   + ++Y  +A L +   +       ++D+ ++     +A++ ++D+     +  + A
Sbjct: 367 GFGTQVHAYTIKANLGNDSYVTNS----LIDMYAKCDCLTDARK-VFDIFAAADVVLFNA 421

Query: 415 LLGG 418
           ++ G
Sbjct: 422 MIEG 425



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 13/233 (5%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAA 251
           A K+F++MP RN+VSW+ M+   +  G  EE++ +F+E  R     PN   L   I A +
Sbjct: 98  ARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACS 157

Query: 252 NIAALG--MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            +   G  M     +  VK     DV+VG  LI FY K G+++ + LVFD L E++ VTW
Sbjct: 158 GLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTW 217

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQ 366
             +I G  + GR   +++ F ++  + + P+G  L  +L AC+    +E G   +++  +
Sbjct: 218 TTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR 277

Query: 367 AKLE-DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             LE D  ++       ++D   + GR   A +    +P +  I  W  LL G
Sbjct: 278 YGLEMDASLMN-----VLIDSYVKCGRVIAAHKLFNGMP-NKNIISWTTLLSG 324



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 7/152 (4%)

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA-IEFFE 330
           +LD ++ N LI+ Y++ G M  +  VF+K+ ERN+V+W+ ++     +G  EE+ + F E
Sbjct: 76  ELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLE 135

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG-YSYFS-QAKLEDPGMLKPEHYAC-MVDLL 387
             R     PN   L   + AC  +GL  +G +  F  Q+ L   G  +  +    ++D  
Sbjct: 136 FWRTRKDSPNEYILSSFIQAC--SGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFY 193

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            + G    A+     LP    +  W  ++ GC
Sbjct: 194 LKDGNIDYARLVFDALPEKSTVT-WTTMISGC 224


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 277/473 (58%), Gaps = 32/473 (6%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  ++++   +  +VF    + N ++ + +I  +A+      A  +F +M      P+E
Sbjct: 267 VTMYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTE 326

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF  V+ + + +  L +GKQ H    K+G ++ V+V SA++D+Y K   I +A   F  
Sbjct: 327 FTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQ 386

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
            ++ +                              +VV W AMI G+ Q G +EEA+ L+
Sbjct: 387 LYDVD------------------------------DVVLWTAMITGHVQNGEHEEALMLY 416

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             M ++G++P++ T+   + A A +AAL +GK  HA  +K    L   VG +L + Y+KC
Sbjct: 417 SRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCRFSLGGSVGTALSTMYSKC 476

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G++EDS++VF ++ +R++++WN++I  ++Q+GRG +A++ FE M++ G  P+ +T + LL
Sbjct: 477 GNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFEEMKLEGTAPDHITFINLL 536

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
            AC+H GLV++G+ YF +A  +D  ++   +HYACMVD+LSR+G+ KEAK+F+  +  D 
Sbjct: 537 SACSHMGLVDRGWFYF-RAMTKDYNLIPTLDHYACMVDILSRAGQLKEAKDFIDSITIDH 595

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
           G   W+ +LG C+   + ++G +A  +++ L  ED S+Y++LSN  +   KW++V  +R 
Sbjct: 596 GTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRH 655

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
            M+ +G+++  GCSW+E+ ++VHVFV G++ H   + I   L    + +++ E
Sbjct: 656 LMRLRGVSKDLGCSWVELYNRVHVFVVGEQQHPEAENINVELIRLAKHMKDEE 708



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 145/310 (46%), Gaps = 33/310 (10%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPS 117
           S   +VFD +   N VS   ++  +A     EEA  LF  ML    +  +EF   +V+ +
Sbjct: 175 SDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSA 234

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            +    L +G QLH    K GL   V V ++++ +Y K   ++ A RVF  +        
Sbjct: 235 VSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKE------ 288

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                                    RN ++W+AMI GY+Q G    A  +F++M   G  
Sbjct: 289 -------------------------RNSITWSAMITGYAQNGEANCAARMFLQMHSSGFT 323

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P   T    + A +++ AL +GK  H   VK   +  V+V ++L+  YAKCG + D+   
Sbjct: 324 PTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDG 383

Query: 298 FDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           F +L +  ++V W A+I G+ QNG  EEA+  + RM   GI P+ +T+  +L AC     
Sbjct: 384 FHQLYDVDDVVLWTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAA 443

Query: 357 VEKGYSYFSQ 366
           ++ G    +Q
Sbjct: 444 LDLGKQLHAQ 453



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 174/372 (46%), Gaps = 47/372 (12%)

Query: 58  FSSVHQVFDEVPDL--NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL--NIRPSEFTFGS 113
             + + VF ++P    +V S  +++   ++ HH   A+  F  M+     + PS  +F +
Sbjct: 67  LGAAYVVFADIPAALRDVASWNSLLNPLSR-HHPVSALSHFRSMMSSPEAVLPSPHSFAA 125

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQ---SNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              ++  +   + G   HA A K+      +NVFV +A+L++Y KL ++ +A RVF+   
Sbjct: 126 AFTAAARVPSASAGAVTHALACKLPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFDG-- 183

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        M HRN VSW AM+ GY+    +EEA  LF  
Sbjct: 184 -----------------------------MLHRNAVSWAAMVSGYATGKCSEEAFELFRL 214

Query: 231 MLREGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           ML++  +  +  +  A+++A ++   L MG   H   +K      V V NSL++ YAK  
Sbjct: 215 MLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAE 274

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            M+ ++ VF    ERN +TW+A+I GYAQNG    A   F +M  +G  P   T +G+L 
Sbjct: 275 CMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLN 334

Query: 350 ACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           AC+  G +  G   +    +   E    +K    + +VD+ ++ G   +AK+  + L   
Sbjct: 335 ACSDMGALVVGKQTHCLMVKLGFETQVYVK----SALVDMYAKCGCIGDAKDGFHQLYDV 390

Query: 407 PGIGFWKALLGG 418
             +  W A++ G
Sbjct: 391 DDVVLWTAMITG 402



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 37/213 (17%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+ LH WA K G  S+  V ++++  Y  L                              
Sbjct: 33  GEALHGWALKSGAASHAPVSNSLITFYCSL-----------------------------P 63

Query: 187 RERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR--EGLVPNHST 242
           R     A  +F ++P   R+V SWN+++   S+      A++ F  M+   E ++P+  +
Sbjct: 64  RPLLGAAYVVFADIPAALRDVASWNSLLNPLSRH-HPVSALSHFRSMMSSPEAVLPSPHS 122

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKF---LGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
              A  AAA + +   G   HA A K     G  +VFV  +L++ Y K G++ D+  VFD
Sbjct: 123 FAAAFTAAARVPSASAGAVTHALACKLPSSCGSNNVFVSTALLNMYCKLGAVSDAKRVFD 182

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            +  RN V+W A++ GYA     EEA E F  M
Sbjct: 183 GMLHRNAVSWAAMVSGYATGKCSEEAFELFRLM 215


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 154/470 (32%), Positives = 262/470 (55%), Gaps = 26/470 (5%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V    +  +    HQ+FDE+P+ +  S   ++  + +  ++E+A   F+RM   +     
Sbjct: 100 VGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAA--- 156

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            ++ ++I       ++   + L        ++ N    +A++  YI+   +E+A   F+ 
Sbjct: 157 -SWNTMITGYARRGEMEKARVLFY----SMMEKNEVSWNAMISGYIECGDLEKAAHFFKA 211

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMP-HRNVVSWNAMIGGYSQTGRNEEAVNL 227
                VV++T MI G +K ++ E A  +F++M   +N+V+WNAMI GY +  R E+ + L
Sbjct: 212 APFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKL 271

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F  ML EG+ PN S L  A++  + ++AL +G+  H                  I  Y K
Sbjct: 272 FRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQ-----------------IVMYCK 314

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG + D+  +F+ + ++++V WNA+I GYAQ+G  E+A+  F  MR +  +P+ +T + +
Sbjct: 315 CGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAV 374

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L ACNH GLV+ G +YF     +     +P+HY CMVDLL R+G+ +EA + +  +PF P
Sbjct: 375 LLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRP 434

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               +  LLG C++H NVEL EFAA ++L LDP + + YV L+N  +    W++V+ +R+
Sbjct: 435 HAAVFGTLLGACRVHKNVELAEFAAEKLLELDPRNAAGYVQLANIYASKNLWEDVARVRK 494

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            MKE  + +VPG SWIEI++K+H F + DR H   D I+  L+    +++
Sbjct: 495 RMKESNVVKVPGYSWIEIRNKIHHFRSSDRIHPELDSIHKKLKELERKMK 544


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 156/461 (33%), Positives = 256/461 (55%), Gaps = 36/461 (7%)

Query: 51   CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
            CG+ +D      Q F+++    VVS T++I  + ++  Y++AI LF  M    + P  ++
Sbjct: 702  CGNLNDAI----QAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYS 757

Query: 111  FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              SV+ +      L+ G+ +H +  K  +   + V +A++D+Y K  S+EEA  VF    
Sbjct: 758  MTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVF---- 813

Query: 171  NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        ++P +++VSWN MIGGYS+     EA+ LF E
Sbjct: 814  ---------------------------SQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAE 846

Query: 231  MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
            M +E   P+  T+ C + A  ++AAL +G+  H C ++     ++ V N+LI  Y KCGS
Sbjct: 847  MQKESR-PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGS 905

Query: 291  MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            +  + L+FD + E++++TW  +I G   +G G EAI  F++MRI GI+P+ +T   +L+A
Sbjct: 906  LVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYA 965

Query: 351  CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            C+H+GL+ +G+ +F+    E     K EHYACMVDLL+R+G   +A   +  +P  P   
Sbjct: 966  CSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDAT 1025

Query: 411  FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
             W ALL GC+IH +VEL E  A  +  L+P++   YV+L+N  + A KW+ V  +R  + 
Sbjct: 1026 IWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIG 1085

Query: 471  EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
            ++G+ + PGCSWIE++ K   FV+ D  H     I+++L +
Sbjct: 1086 KRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNN 1126



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 188/394 (47%), Gaps = 38/394 (9%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S +  S H++FDE+ D +VVS  ++I           A+  F +ML+L +     T  +
Sbjct: 600 KSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVN 659

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + +   +  L+LG+ LH    K      V   + +LD+Y K                  
Sbjct: 660 SVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSK------------------ 701

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                   CG L      DA++ F++M  + VVSW ++I  Y + G  ++A+ LF EM  
Sbjct: 702 --------CGNLN-----DAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES 748

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           +G+ P+  ++   + A A   +L  G+  H    K    L + V N+L+  YAKCGSME+
Sbjct: 749 KGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEE 808

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + LVF ++  ++IV+WN +I GY++N    EA++ F  M+    RP+G+T+  LL AC  
Sbjct: 809 AYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGS 867

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
              +E G        +   G     H A  ++D+  + G    A+  L+D+  +  +  W
Sbjct: 868 LAALEIGRGI--HGCILRNGYSSELHVANALIDMYVKCGSLVHAR-LLFDMIPEKDLITW 924

Query: 413 KALLGGCQIH--SNVELGEFAARRILALDPEDVS 444
             ++ GC +H   N  +  F   RI  + P++++
Sbjct: 925 TVMISGCGMHGLGNEAIATFQKMRIAGIKPDEIT 958



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 174/371 (46%), Gaps = 38/371 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEV-PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           VSCG+         ++FD +  D  V     ++  +AK   Y E+IYLF +M  L I  +
Sbjct: 497 VSCGA----LREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGN 552

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            +TF  ++     L  +   K++H    K+G  S   V ++++  Y K   ++ A     
Sbjct: 553 SYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAH---- 608

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                                      KLF E+  R+VVSWN+MI G    G +  A+  
Sbjct: 609 ---------------------------KLFDELGDRDVVSWNSMISGCVMNGFSHSALEF 641

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F++ML   +  + +TL  ++ A AN+ +L +G++ H   VK     +V   N+L+  Y+K
Sbjct: 642 FVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSK 701

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG++ D++  F+K+ ++ +V+W ++I  Y + G  ++AI  F  M   G+ P+  ++  +
Sbjct: 702 CGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSV 761

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L AC     ++KG    +  +  +  +  P   A M D+ ++ G  +EA      +P   
Sbjct: 762 LHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALM-DMYAKCGSMEEAYLVFSQIPVKD 820

Query: 408 GIGFWKALLGG 418
            I  W  ++GG
Sbjct: 821 -IVSWNTMIGG 830



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 29/167 (17%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDK-LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           +G  L+  Y  CG++ +   +FD  L++  +  WN ++  YA+ G   E+I  F++M+  
Sbjct: 488 LGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKL 547

Query: 336 GIRPNGVTL---------LGLLWACN--HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384
           GI  N  T          LG +  C   H  + + G+  ++                 ++
Sbjct: 548 GITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTV------------VNSLI 595

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVEL 427
               +SG    A + L+D   D  +  W +++ GC +    HS +E 
Sbjct: 596 ATYFKSGEVDSAHK-LFDELGDRDVVSWNSMISGCVMNGFSHSALEF 641


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 160/455 (35%), Positives = 260/455 (57%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F+E+   ++VS + +I  + +   YEEA+ LF  M    I   E    SV+ + + L 
Sbjct: 244 KLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLL 303

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +  GK +H    KVG+++ V + +A++ +Y     +  A ++F ++   + +S+ +MI 
Sbjct: 304 VVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMIS 363

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G +K    E A  LF  MP ++ VSW+AMI GY+Q  R  E + LF EM  EG  P+ + 
Sbjct: 364 GYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETI 423

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I A  ++AAL  GK  HA   K   K+++ +G +LI+ Y K G +ED+L VF  L 
Sbjct: 424 LVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLE 483

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+ + TWNA+I G A NG  +++++ F  M+ +G+ PN +T + +L AC H GLV++G+ 
Sbjct: 484 EKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHR 543

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F+    E       +HY CMVDLL R+G  KEA+E +  +P  P +  W ALLG C+ +
Sbjct: 544 HFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKY 603

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            + E GE   R+++ L P+     V+LSN  +  G W +V  +R  M++ G+ + PGCS 
Sbjct: 604 GDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSM 663

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           IE   +VH F+ GD+ H  N+ I  +L    ++++
Sbjct: 664 IEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLK 698



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/456 (23%), Positives = 206/456 (45%), Gaps = 74/456 (16%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STA 120
           +Q+F  + + N     T++  + +++   +AI+++  ML  N+    +T+  +  S S  
Sbjct: 80  YQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIR 139

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFV----------------------GSAILDL------ 152
           L + + GK +     KVG  S+V++                      GS++LD+      
Sbjct: 140 LAEFD-GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSM 198

Query: 153 ---YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
              Y+ + ++EEA  V++     NV++  +MI    K+   E+A KLF EM  +++VSW+
Sbjct: 199 LAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWS 258

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
           A+I  Y Q    EEA+ LF EM   G++ +   +   + A + +  +  GK  H   VK 
Sbjct: 259 ALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKV 318

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV----------------- 312
             +  V + N+LI  Y+ C  +  +  +F +    + ++WN++                 
Sbjct: 319 GIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALF 378

Query: 313 --------------ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
                         I GYAQ  R  E +  F+ M+I G +P+   L+ ++ AC H   ++
Sbjct: 379 DSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALD 438

Query: 359 KG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           +G   ++Y  +  L+   +L       ++++  + G  ++A E    L  + G+  W AL
Sbjct: 439 QGKWIHAYIRKNGLKINIILG----TTLINMYMKLGCVEDALEVFKGLE-EKGVSTWNAL 493

Query: 416 LGGCQIHSNVE--LGEFAARRILALDPEDVSSYVML 449
           + G  ++  V+  L  F+  +   + P +++   +L
Sbjct: 494 ILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVL 529


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 173/521 (33%), Positives = 277/521 (53%), Gaps = 45/521 (8%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ +L  C   L L  L +LH  +  +  +  + S       A       CG+     +S
Sbjct: 354 ILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELS------NAFILAYAKCGA----LNS 403

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             +VF  + D  V S   +IG  A+     +A++L  +M     +P  FT  S++ +   
Sbjct: 404 AEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L+ L  GK++H +  + GL+++ FVG+++L  YI                          
Sbjct: 464 LKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIH------------------------- 498

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
            CG     +   A  LF  M  +N+VSWNAMI GYSQ G   E++ LF + L EG+  + 
Sbjct: 499 -CG-----KASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHE 552

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
             +     A + ++AL +GK  H   +K L   D FVG S+I  YAK G +++S  VFD 
Sbjct: 553 IAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDG 612

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           L ++N+ +WNA+I  +  +G G+EAIE +ERM+  G  P+  T +G+L AC H GLVE+G
Sbjct: 613 LKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEG 672

Query: 361 YSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             YF +  +++  +++P  EHYAC++D+L+R+GR  +A   + ++P +     W +LL  
Sbjct: 673 LKYFKE--MQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRS 730

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+    +E+GE  A+++L L+P+   +YV+LSN  +  GKWD V  +R+ MKE G+ +  
Sbjct: 731 CRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDA 790

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           GCSWIE+  +V+ FV GD     + EI  + R   E+I E 
Sbjct: 791 GCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEI 831



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 183/380 (48%), Gaps = 58/380 (15%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEF 109
           CGS  D       VFD +   N++    ++  + +   Y + + +F  ++   + +P  F
Sbjct: 92  CGSPLDS----RLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNF 147

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF SVI +   + D+ LG+ +H    K+GL  +VFVG+A++ +Y K  +++EA +VF+  
Sbjct: 148 TFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFD-- 205

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                                         MP  N+VSWN+MI  +S+ G + ++ +L +
Sbjct: 206 -----------------------------FMPETNLVSWNSMICAFSENGFSRDSFDLLM 236

Query: 230 EML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           EML  EGL+P+  T+   +   A    + +G   H  AVK     +V V N+++  Y+KC
Sbjct: 237 EMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKC 296

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING--IRPNGVTLLG 346
           G + ++ + F K   +N+V+WN +I  ++  G   EA    + M+I G  ++ N VT+L 
Sbjct: 297 GYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILN 356

Query: 347 LLWAC----NHTGLVE-KGYSY---FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           +L AC        L E  GYS+   F   +L +  +L    YA       + G    A++
Sbjct: 357 VLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILA---YA-------KCGALNSAEK 406

Query: 399 FLYDLPFDPGIGFWKALLGG 418
             + +  D  +  W AL+GG
Sbjct: 407 VFHGIG-DKTVSSWNALIGG 425



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 177/358 (49%), Gaps = 42/358 (11%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQ 129
           NVVS  T+I  F+ +    EA  L   M +    ++ +E T  +V+P+      L   K+
Sbjct: 313 NVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKE 372

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           LH ++ +   Q            +++LS             N  +++Y    CG L    
Sbjct: 373 LHGYSFRHCFQ------------HVELS-------------NAFILAYAK--CGALN--- 402

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
              A K+F  +  + V SWNA+IGG++Q G   +A++L  +M   G  P+  T+   ++A
Sbjct: 403 --SAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLA 460

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A++ +L  GK  H   ++   + D FVG SL+S Y  CG    + ++FD++ ++N+V+W
Sbjct: 461 CAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSW 520

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYSYFSQ 366
           NA+I GY+QNG   E++  F +    GI+ + + ++ +  AC+      L ++ + Y  +
Sbjct: 521 NAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK 580

Query: 367 AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
           A   +   +       ++D+ ++SG  KE+++ ++D   D  +  W A++    IH +
Sbjct: 581 ALQTEDAFVG----CSIIDMYAKSGCIKESRK-VFDGLKDKNVASWNAIIVAHGIHGH 633


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 159/452 (35%), Positives = 260/452 (57%), Gaps = 5/452 (1%)

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           ++ +V+   +I  +  +  Y+EA+ +  RM+   I   EFT+ SVI +      L LGKQ
Sbjct: 248 NMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQ 307

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +HA+  +    S  F  S ++ LY K    +EA  +FE     ++VS+  ++ G +    
Sbjct: 308 VHAYVLRREDFSFHFDNS-LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGH 366

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
             +A  +F+EM  +N++SW  MI G ++ G  EE + LF  M REG  P       AI +
Sbjct: 367 IGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKS 426

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A + A   G+ +HA  +K      +  GN+LI+ YAKCG +E++  VF  +   + V+W
Sbjct: 427 CAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSW 486

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           NA+I    Q+G G EA++ +E M   GIRP+ +TLL +L AC+H GLV++G  YF    +
Sbjct: 487 NALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDS--M 544

Query: 370 EDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
           E    + P  +HYA ++DLL RSG+F +A+  +  LPF P    W+ALL GC++H N+EL
Sbjct: 545 ETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMEL 604

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
           G  AA ++  L PE   +Y++LSN  +  G+W+ V+ +R+ M+++G+ +   CSWIE+++
Sbjct: 605 GIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMET 664

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +VH F+  D +H   + +Y  L+   +++R  
Sbjct: 665 QVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRL 696



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 150/339 (44%), Gaps = 52/339 (15%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L L + +H      G Q    + + ++D+Y K S +  A ++F++   P+ ++ TTM+ G
Sbjct: 30  LQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSG 89

Query: 184 LLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                    A  +F++ P   R+ V +NAMI G+S       A+NLF +M  EG  P++ 
Sbjct: 90  YCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNF 149

Query: 242 TLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS----MEDSLL 296
           T    +   A +A        FHA A+K        V N+L+S Y+KC S    +  +  
Sbjct: 150 TFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARK 209

Query: 297 VFDKLTERNIVTWNAVICGYAQNG------------------------------RG--EE 324
           VFD++ E++  +W  ++ GY +NG                              RG  +E
Sbjct: 210 VFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQE 269

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--- 381
           A+E   RM  +GI  +  T   ++ AC   GL++ G       K     +L+ E ++   
Sbjct: 270 ALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG-------KQVHAYVLRREDFSFHF 322

Query: 382 --CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              +V L  + G+F EA+     +P    +  W ALL G
Sbjct: 323 DNSLVSLYYKCGKFDEARAIFEKMPAKDLVS-WNALLSG 360



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 37/267 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F E+ + N++S   +I   A+    EE + LFS M      P ++ F   I S   L  
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G+Q HA   K+G  S++  G+A++ +Y K   +EEA +V                  
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQV------------------ 474

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                        F+ MP  + VSWNA+I    Q G   EAV+++ EML++G+ P+  TL
Sbjct: 475 -------------FRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITL 521

Query: 244 PCAIIAAANIAALGMGKSFH---ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
              + A ++   +  G+ +        +     D +    LI    + G   D+  V + 
Sbjct: 522 LTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYA--RLIDLLCRSGKFSDAESVIES 579

Query: 301 LTERNIV-TWNAVICGYAQNGRGEEAI 326
           L  +     W A++ G   +G  E  I
Sbjct: 580 LPFKPTAEIWEALLSGCRVHGNMELGI 606


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 165/505 (32%), Positives = 265/505 (52%), Gaps = 35/505 (6%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  ++S    ++   FD +P  + VS  T I  F+     +E++ LF RM      P+E
Sbjct: 96  LSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTE 155

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +T  S++ +S  L DL  GKQ+H          NVF+ +A+ D+Y K   IE+A  +F+ 
Sbjct: 156 YTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDC 215

Query: 169 THNPNVVSYTTMICGLLKRE-----------------------------------RFEDA 193
               N+VS+  MI G  K                                     R ++A
Sbjct: 216 LTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEA 275

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
            ++F E   +++V W AM+ GY++ GR E+A+ LF EML E + P+  TL   + + A +
Sbjct: 276 RRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKL 335

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           A+L  G++ H  ++      ++ V ++LI  Y+KCG ++D+  VF+ +  RN+V+WNA+I
Sbjct: 336 ASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMI 395

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            G AQNG  ++A+E FE M     +P+ VT +G+L AC H   +E+G  YF     +   
Sbjct: 396 VGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGM 455

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
               +HYACMV+LL R+GR ++A   + ++  DP    W  LL  C    ++   E AAR
Sbjct: 456 TPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAAR 515

Query: 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFV 493
            +  LDP     Y+MLSN  +  G+W +V+++R  MK K + +  G SWIEI ++VH F 
Sbjct: 516 HLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFT 575

Query: 494 TGDRNHHMNDEIYAVLRSCTEQIRE 518
           + DR H  +++IY  L     +++E
Sbjct: 576 SEDRTHPESEDIYEKLNMLIGKLQE 600



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 137/252 (54%), Gaps = 5/252 (1%)

Query: 123 DLNLGKQLHAWATKVGLQ-SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           ++N  K+L +       Q ++ F+ + +L LY K   + +A  +F+     ++ S+  ++
Sbjct: 37  EINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALL 96

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               K    ++    F  MP R+ VS+N  I G+S     +E++ LF  M REG  P   
Sbjct: 97  SAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEY 156

Query: 242 TLPCAIIAAANIAALGMGKSFHACAV--KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           T+   + A+A ++ L  GK  H   +   FLG  +VF+ N+L   YAKCG +E +  +FD
Sbjct: 157 TIVSILNASAQLSDLRYGKQIHGSIIVRNFLG--NVFIWNALTDMYAKCGEIEQARWLFD 214

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            LT++N+V+WN +I GYA+NG+ E+ I    +MR++G  P+ VT+  ++ A    G V++
Sbjct: 215 CLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDE 274

Query: 360 GYSYFSQAKLED 371
               FS+ K +D
Sbjct: 275 ARRVFSEFKEKD 286


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 249/468 (53%), Gaps = 35/468 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTII---GRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           ++ D  +   +VFD     +VV    +I    R   Q    +A+ +F  M    IRPS  
Sbjct: 396 AKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLL 455

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF S++ +S +L  L L KQ+H    K GL  ++F GSA++ +Y                
Sbjct: 456 TFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSN-------------- 501

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       C  LK  R      +F EM  +++V WN+M  GY Q   NEEA+NLF+
Sbjct: 502 ------------CYCLKDSRL-----VFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFL 544

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           E+      P+  T    + AA N+A+L +G+ FH   +K   + + ++ N+L+  YAKCG
Sbjct: 545 ELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCG 604

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           S ED+   FD    R++V WN+VI  YA +G G +A++  E+M   GI PN +T +G+L 
Sbjct: 605 SPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLS 664

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           AC+H GLVE G   F +  L      + EHY CMV LL R+GR  EA+E +  +P  P  
Sbjct: 665 ACSHAGLVEDGLKQF-ELMLRFGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAA 723

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W++LL GC    NVEL E+AA   +  DP+D  S+ +LSN  +  G W +   +R  M
Sbjct: 724 IVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERM 783

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           K +G+ + PG SWIEI  +VH+F++ D++H   ++IY VL     QIR
Sbjct: 784 KFEGVVKEPGRSWIEINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 164/321 (51%), Gaps = 38/321 (11%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG    +  + H++FD +P+ N++S TT++  + +   ++EA+ LF+ M    ++P  
Sbjct: 295 VKCG----RVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDM 350

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           F   S++ S  +L  L  G Q+HA+  K  L ++ +V ++++D+Y K   + EA +VF+ 
Sbjct: 351 FACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDI 410

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE---AV 225
               +VV +  MI                                GYS+ G   E   A+
Sbjct: 411 FAADDVVLFNAMI-------------------------------EGYSRLGTQWELHDAL 439

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           N+F +M    + P+  T    + A+A++ +LG+ K  H    KF   LD+F G++LI+ Y
Sbjct: 440 NIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVY 499

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           + C  ++DS LVFD++  +++V WN++  GY Q    EEA+  F  ++++  RP+  T +
Sbjct: 500 SNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFV 559

Query: 346 GLLWACNHTGLVEKGYSYFSQ 366
            ++ A  +   ++ G  +  Q
Sbjct: 560 DMVTAAGNLASLQLGQEFHCQ 580



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 142/290 (48%), Gaps = 34/290 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P+ + V+ TT+I    K      ++ LF +++  N+ P  +   +V+ + + L  
Sbjct: 205 VFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPF 264

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+HA   + G + +  + + ++D Y+K                          CG
Sbjct: 265 LEGGKQIHAHILRYGHEKDASLMNVLIDSYVK--------------------------CG 298

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                R   A KLF  MP++N++SW  ++ GY Q   ++EA+ LF  M + GL P+    
Sbjct: 299 -----RVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFAC 353

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + A++ AL  G   HA  +K     D +V NSLI  YAKC  + ++  VFD    
Sbjct: 354 SSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAA 413

Query: 304 RNIVTWNAVICGYAQNGRGEE---AIEFFERMRINGIRPNGVTLLGLLWA 350
            ++V +NA+I GY++ G   E   A+  F  MR   IRP+ +T + LL A
Sbjct: 414 DDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRA 463



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 177/366 (48%), Gaps = 50/366 (13%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHH--YEEAIYLFSRMLLLNIR---PSEFTFGSVIPS 117
           +VF+++P+ N+V+ +T++   A  HH  YEE++ +F  +     R   P+E+   S I +
Sbjct: 100 KVFEKMPERNLVTWSTMVS--ACNHHGFYEESLVVF--LDFWRTRKNSPNEYILSSFIQA 155

Query: 118 STALEDLN--LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            + L+     +  QL ++  K     +V+VG+ ++D Y+K  +I+ A  VF         
Sbjct: 156 CSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVF--------- 206

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                           DAL      P ++ V+W  MI G  + GR+  ++ LF +++   
Sbjct: 207 ----------------DAL------PEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGN 244

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           +VP+   L   + A + +  L  GK  HA  +++  + D  + N LI  Y KCG +  + 
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAH 304

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +FD +  +NI++W  ++ GY QN   +EA+E F  M   G++P+      +L +C    
Sbjct: 305 KLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLH 364

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            +E G   ++Y  +A L +   +       ++D+ ++     EA++ ++D+     +  +
Sbjct: 365 ALEFGTQVHAYTIKANLGNDSYVTNS----LIDMYAKCDCLTEARK-VFDIFAADDVVLF 419

Query: 413 KALLGG 418
            A++ G
Sbjct: 420 NAMIEG 425



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 13/238 (5%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAA 251
           A K+F++MP RN+V+W+ M+   +  G  EE++ +F++  R     PN   L   I A +
Sbjct: 98  ARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACS 157

Query: 252 NIAALG--MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            +   G  M     +  VK     DV+VG  LI FY K G+++ + LVFD L E++ VTW
Sbjct: 158 GLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTW 217

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ--- 366
             +I G  + GR   +++ F ++    + P+G  L  +L AC+    +E G    +    
Sbjct: 218 TTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR 277

Query: 367 -AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
               +D  ++       ++D   + GR + A +    +P +  I  W  LL G + +S
Sbjct: 278 YGHEKDASLMN-----VLIDSYVKCGRVRAAHKLFDGMP-NKNIISWTTLLSGYKQNS 329



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 7/152 (4%)

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA-IEFFE 330
           +LD ++ N L++ Y++ G M  +  VF+K+ ERN+VTW+ ++     +G  EE+ + F +
Sbjct: 76  ELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLD 135

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG-YSYFSQAKLEDPGMLKPEHY--ACMVDLL 387
             R     PN   L   + AC  +GL   G +  F             + Y    ++D  
Sbjct: 136 FWRTRKNSPNEYILSSFIQAC--SGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFY 193

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            + G    A+     LP    +  W  ++ GC
Sbjct: 194 LKEGNIDYARLVFDALPEKSTVT-WTTMISGC 224


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  304 bits (778), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 154/448 (34%), Positives = 262/448 (58%), Gaps = 2/448 (0%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++VS  +++  F +  + ++A+ LF RM    + P+  T  SV+ +     +L LG+++ 
Sbjct: 307 DIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVC 366

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            +  +  +  N+ V +A +D+++K   +E A  +F++    +VVS+TT+I G  K     
Sbjct: 367 DYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHG 426

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF--IEMLREGLVPNHSTLPCAIIA 249
            A  +F  MP +++ +WN +I GY Q+GR +EA+ +F  +++ + G  P+  TL   + A
Sbjct: 427 IARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSA 486

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A + A+ +G+  H    K   +L+  +  SLI  Y+K G +E ++ VF  +  +++  W
Sbjct: 487 CAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVW 546

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           +A+I G A +GRGE AIE F  M+   ++PN VT   LL AC+H+GLV++G   F + + 
Sbjct: 547 SAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMER 606

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
               + K +HY+CMVD+L R+G  +EA +F+  +P  P    W ALLG C IH N+EL E
Sbjct: 607 VYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAE 666

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
            A  R+L ++P +  +YV+LSN  +  G W+ VS +R++M++ G+ +  GCS IEI   V
Sbjct: 667 KACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTV 726

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           H F+ GD  H ++ +IYA L     ++R
Sbjct: 727 HEFIVGDNAHPLSRDIYAKLDEIMARLR 754



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 214/494 (43%), Gaps = 85/494 (17%)

Query: 29  IETQKASVQKLETPAIRTDSVSCGSESDKFSSV---HQVFDEVPDLNVVSATTIIGRFAK 85
           I  Q     KL  P   ++  +  + S  FS++    +VFD++P  N+ S   +I   A 
Sbjct: 158 IHAQMLRTNKLHDPYAASELFTAAAFS-SFSALDYARKVFDQIPQPNLYSWNILIRALAT 216

Query: 86  QHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF 144
                +++ +F RML  +   P++FTF  +I +        +GK +H  A K     +VF
Sbjct: 217 SSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVF 276

Query: 145 VGSAILDLYIKLSSIEEATRVFE--DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
           V ++++  Y     ++ A  VFE  + +N ++VS+ +M+ G ++                
Sbjct: 277 VLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQ---------------- 320

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
                     GGY      ++A++LF  M  EG+ PN  T+   + A A    L +G+  
Sbjct: 321 ----------GGYP-----DKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKV 365

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT-------------- 308
                +    +++ V N+ I  + KCG +E +  +FD + +R++V+              
Sbjct: 366 CDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEH 425

Query: 309 -----------------WNAVICGYAQNGRGEEAIEFFERMRI--NGIRPNGVTLLGLLW 349
                            WN +I GY Q+GR +EA+  F  +++  +G RP+ VTLL  L 
Sbjct: 426 GIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLS 485

Query: 350 ACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           AC   G ++ G   + Y  + +++    L       ++D+ S+SG  ++A E  + +  +
Sbjct: 486 ACAQLGAMDIGEWIHGYIKKERIQ----LNRNLATSLIDMYSKSGDVEKAIEVFHSIG-N 540

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS-SYVMLSNALSVAGKWDNVSNI 465
             +  W A++ G  +H     GE A    L +    V  + V  +N L        V   
Sbjct: 541 KDVFVWSAMIAGLAMHGR---GEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEG 597

Query: 466 RREMKEKGMTRVPG 479
           +R   E  M RV G
Sbjct: 598 KRLFDE--MERVYG 609


>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Glycine max]
          Length = 522

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 256/456 (56%), Gaps = 14/456 (3%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQ-HHYEEAIYLFSRMLLLNI-RPSEFTFGSVI---PSS 118
           +FD +P LN    T +I  +A     +  A+ LF  ML     RP+ F F   +   P S
Sbjct: 61  IFDHIPSLNTHLFTAMITAYAAHPATHPSALSLFRHMLRSQPPRPNHFIFPHALKTCPES 120

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS-IEEATRVFEDTHNPNVVSY 177
            A E       LHA   K G      V +A++D Y K+S  +  A +VF++  + +VVS+
Sbjct: 121 CAAE------SLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSF 174

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T M+ G  +    E A+++F EM  R+V SWNA+I G +Q G   + + LF  M+ E   
Sbjct: 175 TAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNR 234

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T+ CA+ A  ++  L +G+  H    K     D FV N+L+  Y KCGS+  +  V
Sbjct: 235 PNGVTVVCALSACGHMGMLQLGRWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKV 294

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM--RINGIRPNGVTLLGLLWACNHTG 355
           F+   E+ + +WN++I  +A +G+ + AI  FE+M     G+RP+ VT +GLL AC H G
Sbjct: 295 FEMNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVGLLNACTHGG 354

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           LVEKGY YF     E     + EHY C++DLL R+GRF EA + +  +  +P    W +L
Sbjct: 355 LVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWGSL 414

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L GC++H   +L EFAA++++ +DP +    +ML+N     GKWD V N+ R +K++   
Sbjct: 415 LNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIMLANVYGELGKWDEVRNVWRTLKQQKSY 474

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
           +VPGCSWIE+  +VH F + D+++   +++Y VL S
Sbjct: 475 KVPGCSWIEVDDQVHQFYSLDKSNPKTEDLYIVLES 510



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 67/322 (20%)

Query: 40  ETPAIRTDSVSCGSE-SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           E P ++T  V   S+ S    +  +VFDE+ D +VVS T ++  FA+    E A+ +F  
Sbjct: 137 EYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGE 196

Query: 99  MLLLNI-------------------------------RPSEFTFGSVIPSSTALEDLNLG 127
           ML  ++                               RP+  T    + +   +  L LG
Sbjct: 197 MLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECNRPNGVTVVCALSACGHMGMLQLG 256

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           + +H +  K GL  + FV +A++D+Y K  S+ +A +VFE                    
Sbjct: 257 RWIHGYVYKNGLAFDSFVLNALVDMYGKCGSLGKARKVFEMN------------------ 298

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR--EGLVPNHSTLPC 245
                        P + + SWN+MI  ++  G+++ A+ +F +M+    G+ P+  T   
Sbjct: 299 -------------PEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVG 345

Query: 246 AIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLT-E 303
            + A  +   +  G  +    V+  G +  +     LI    + G  ++++ V   ++ E
Sbjct: 346 LLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSME 405

Query: 304 RNIVTWNAVICGYAQNGRGEEA 325
            + V W +++ G   +GR + A
Sbjct: 406 PDEVVWGSLLNGCKVHGRTDLA 427


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 149/451 (33%), Positives = 257/451 (56%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS   +S+K     Q+FD++ + ++VS TT++  + +  +Y E++ LF +M   N+ 
Sbjct: 306 TTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVI 365

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P E    +V+ +   LED +LG+ +HA+    G+  + F+G+A+LDLY K   ++EA R 
Sbjct: 366 PDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRT 425

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           FE     +  S+ +M+ G  +    + A   F ++P +++VSWN M+  Y +     E+ 
Sbjct: 426 FEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESF 485

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            +F +M    + P+ +TL   + + A + AL  G   +    K    +D  +G +LI  Y
Sbjct: 486 EIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMY 545

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            KCG +E +  +F ++ E+N+  W A++  YA  G+  EAI+ +  M   G++P+ VT +
Sbjct: 546 GKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFI 605

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            LL AC+H GLV++GY YF++ +     +    HY CMVDLL R G  +E  +F+  +P 
Sbjct: 606 ALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPI 665

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
           +P +  W +L+  C+ H NVEL E A ++++ +DP +  ++V+LSN  + AG+WD+VS +
Sbjct: 666 EPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKV 725

Query: 466 RREMKEKGMTRVPGCSWIEIKSKVHVFVTGD 496
           R ++ E G+ + PG + IE    VH FV  +
Sbjct: 726 RTKLHETGVPKQPGFTMIEQNGVVHEFVASN 756



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 198/402 (49%), Gaps = 41/402 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+  K   V Q+F+++   +V+S  T+I  +  +  Y EA+ LF  ML+  + P E T  
Sbjct: 179 SKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMV 238

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE--DTH 170
           S++ +   L+DL +GK+LH +     L     + + ++D+Y K   ++EA  +    D  
Sbjct: 239 SLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDES 298

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             +VV +TT++ G +K  + + A +LF +M  R++VSW  M+ GY Q G   E++ LF +
Sbjct: 299 EVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQ 358

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  E ++P+   L   + A  ++    +G+S HA  V +   +D F+GN+L+  YAKCG 
Sbjct: 359 MRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGK 418

Query: 291 MEDSLLVFD-------------------------------KLTERNIVTWNAVICGYAQN 319
           ++++L  F+                               K+ E++IV+WN ++  Y ++
Sbjct: 419 LDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKH 478

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY---SYFSQAKLEDPGMLK 376
               E+ E F +M+ + ++P+  TL+ LL +C   G +  G     Y  + ++    ML 
Sbjct: 479 DLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG 538

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                 ++D+  + G  + A E    +  +  +  W A++  
Sbjct: 539 ----TALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAA 575



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/474 (24%), Positives = 192/474 (40%), Gaps = 76/474 (16%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           L   S +   +P   I     +   +  P I +  ++     +     HQ+     +   
Sbjct: 42  LKSCSNIREFSP---IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPES 98

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           +   T++    K+   +E +  +  M+   +     TF  +I +     D+ LG ++H  
Sbjct: 99  IIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGR 158

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             K G   N  + + ++ LY K                          CG LK     + 
Sbjct: 159 ILKCGFGRNKSLNNNLMGLYSK--------------------------CGKLK-----EV 187

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
            +LF++M HR+V+SWN MI  Y   G   EA++LF EML  G++P+  T+   +   A +
Sbjct: 188 CQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKL 247

Query: 254 AALGMGKSFHA---------------CAVKFLGK------------------LDVFVGNS 280
             L MGK  H                C V    K                  +DV +  +
Sbjct: 248 KDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTT 307

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L+S Y K   ++ +  +FDK+ ER++V+W  ++ GY Q G   E++E F++MR   + P+
Sbjct: 308 LVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPD 367

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEF 399
            V L+ +L AC H    + G S    A +   GML        ++DL ++ G+  EA   
Sbjct: 368 EVALVTVLSACVHLEDFDLGRSV--HAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRT 425

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNA 452
              LP       W ++L G      V+     AR      PE D+ S+  + NA
Sbjct: 426 FEQLPCKSAAS-WNSMLDGFCRSGGVD----KARDFFNKIPEKDIVSWNTMVNA 474



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 16/280 (5%)

Query: 149 ILDLYIKLSSIEEATRVFED------THNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
           I+DL    S+I E + +          H+P + S   ++  LL     + A ++      
Sbjct: 38  IIDLLKSCSNIREFSPIHAHLITANLIHDPEITS--QVLAFLLSVNNLDCAHQILSYSHE 95

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
              + WN ++    + G  +E +  +  M+ +G++ + ST    I A      + +G   
Sbjct: 96  PESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEV 155

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H   +K     +  + N+L+  Y+KCG +++   +F+K+T R++++WN +I  Y   G  
Sbjct: 156 HGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMY 215

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEH 379
            EA++ F+ M ++G+ P+ +T++ L+  C     +E G   + Y    KL   G L    
Sbjct: 216 REALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSL---- 271

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALLGG 418
             C+VD+ S+ G+  EA   L      +  +  W  L+ G
Sbjct: 272 LNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSG 311


>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 767

 Score =  304 bits (778), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 257/459 (55%), Gaps = 39/459 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG    +  S  QVFD + + N VS T++IG  A+    EEA+ LF++M  + +   +FT
Sbjct: 307 CG----RLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFT 362

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             +V+    + +D+++G+QLHA     GL S+V V +A++ +Y K   + +A   FE   
Sbjct: 363 LATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMP 422

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             +++S+T MI    +    E A + F +MP RNV+SWN+M+  Y Q G  EE + ++I+
Sbjct: 423 IRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQ 482

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           MLREG+  +  T   +I A A++A L +G    A A K     +V V NS+++ Y++CG 
Sbjct: 483 MLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQ 542

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E++  +F  +  +N+V+WNA++ GYAQNG+G + IE FE+M   G  P+ ++ + +L  
Sbjct: 543 IEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVL-- 600

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
                                             DLL R+G+ ++AK  +  +PF P   
Sbjct: 601 ---------------------------------SDLLGRAGQLEQAKNLINQMPFKPNAA 627

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL  C+IH N +L E A + +L LD E   SY +L+N  S +GK   V+N+R+ M+
Sbjct: 628 IWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMR 687

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +KG+ + PGCSWIE+ ++VHVF   D NH    +++ +L
Sbjct: 688 DKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDVHRML 726



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/304 (35%), Positives = 163/304 (53%), Gaps = 1/304 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPS 107
           +S  ++S +     ++F+++P+ + VS  +++  +      E  I +F  M+      P 
Sbjct: 67  ISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMVRDCCCVPD 126

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            F+F  V+ +S +L  L L  QLH +A K     +  V +++LD+YIK  +++ A +VF 
Sbjct: 127 PFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFC 186

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
            T NP++  + +MI G  K    + AL+LF +MP R+ VSWN MI   SQ G   E +N 
Sbjct: 187 RTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNT 246

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F+EM  +G  PN  T    + A  +I  L  G   HA  V+    LDV+ G  LI  YAK
Sbjct: 247 FLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAK 306

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG +E +  VFD LTE N V+W ++I G AQ G  EEA+  F +MR   +  +  TL  +
Sbjct: 307 CGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATV 366

Query: 348 LWAC 351
           L  C
Sbjct: 367 LGVC 370



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 165/334 (49%), Gaps = 38/334 (11%)

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
            +L  + + ++LHA    +GL+S++F+ + +L++Y     I +A RVF     PNV S+ 
Sbjct: 5   ASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWN 64

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLV 237
           TMI G     +  +A KLF++MP R+ VSWN+M+ GY   G  E  + +F+ M+R+   V
Sbjct: 65  TMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMVRDCCCV 124

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME----- 292
           P+  +  C + A+ ++  L +    H  A KF   +D  V  S++  Y KCG+M+     
Sbjct: 125 PDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKV 184

Query: 293 --------------------------DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
                                      +L +F K+ ER+ V+WN +I   +Q+G G E +
Sbjct: 185 FCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETL 244

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-C-MV 384
             F  M   G RPN +T   +L AC     +E G    ++    +P +   + YA C ++
Sbjct: 245 NTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCL---DVYAGCGLI 301

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           D+ ++ GR + A++    L     +  W +L+GG
Sbjct: 302 DMYAKCGRLESARQVFDGLTEHNAVS-WTSLIGG 334



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 121/234 (51%), Gaps = 12/234 (5%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  ++  S++       + FD++P+ NV+S  +++  + ++ ++EE + ++ +ML   ++
Sbjct: 430 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 489

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
               TF + I +   L  L LG Q+ A A K+G  SNV V ++++ +Y +   IEEA ++
Sbjct: 490 TDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKM 549

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGG-YSQTGR 220
           F      N+VS+  M+ G  +  +    +++F++M +     + +S+ +++     + G+
Sbjct: 550 FSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSDLLGRAGQ 609

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
            E+A NL  +M      PN + +  A++AA  I            AVK L +LD
Sbjct: 610 LEQAKNLINQM---PFKPN-AAIWGALLAACRIHG---NTKLAELAVKNLLELD 656


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 257/465 (55%), Gaps = 32/465 (6%)

Query: 53   SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
            S+    +   +VF ++ D  +VS T+ I  + ++  Y +AI LF  M    +RP  +T  
Sbjct: 617  SKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVT 676

Query: 113  SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            S++ +      L+ G+ +H++  K G+ SN+ V +A++++Y K  S+EEA  VF      
Sbjct: 677  SIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF------ 730

Query: 173  NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                      ++P +++VSWN MIGGYSQ     EA+ LF++M 
Sbjct: 731  -------------------------SKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ 765

Query: 233  REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            ++   P+  T+ C + A A +AAL  G+  H   ++     D+ V  +L+  YAKCG + 
Sbjct: 766  KQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 824

Query: 293  DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
             + L+FD + ++++++W  +I GY  +G G EAI  F  MRI GI P+  +   +L AC+
Sbjct: 825  LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACS 884

Query: 353  HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            H+GL+ +G+ +F+  + E     K EHYAC+VDLL+R G   +A +F+  +P  P    W
Sbjct: 885  HSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIW 944

Query: 413  KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
              LL GC+IH +V+L E  A  I  L+P++   YV+L+N  + A KW+ V  +R+ M+++
Sbjct: 945  GVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKR 1004

Query: 473  GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            G  + PGCSWIE+  K ++FV G+  H     I  +LR  T Q++
Sbjct: 1005 GFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQ 1049



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 193/415 (46%), Gaps = 42/415 (10%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +L +C    SL    ++HS+  +  I   +A   KL         V+CG          +
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMY-----VNCGD----LVQGRK 425

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++ +  V     ++  +AK  ++ E++ LF +M  L +  + +TF  V+    AL  
Sbjct: 426 IFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGK 485

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +   K++H +  K+G  SN  V ++++  Y K   +E A       HN            
Sbjct: 486 VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESA-------HN------------ 526

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                       LF E+   +VVSWN+MI G    G +   + +FI+ML  G+  + +TL
Sbjct: 527 ------------LFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTL 574

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              ++A ANI  L +G++ H   VK     +V   N+L+  Y+KCG++  +  VF K+ +
Sbjct: 575 VSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGD 634

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
             IV+W + I  Y + G   +AI  F+ M+  G+RP+  T+  ++ AC  +  ++KG   
Sbjct: 635 TTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDV 694

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            S       G   P   A ++++ ++ G  +EA+     +P    +  W  ++GG
Sbjct: 695 HSYVIKNGMGSNLPVTNA-LINMYAKCGSVEEARLVFSKIPVKDIVS-WNTMIGG 747



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 31/251 (12%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           ++ SV+      + L  GK++H+     G+  +  +G+ ++ +Y+               
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVN-------------- 416

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       CG L + R     K+F ++ +  V  WN ++  Y++ G   E+V+LF 
Sbjct: 417 ------------CGDLVQGR-----KIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFK 459

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M + G+V N  T  C +   A +  +   K  H   +K     +  V NSLI+ Y K G
Sbjct: 460 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 519

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            +E +  +FD+L+E ++V+WN++I G   NG     +E F +M I G+  +  TL+ +L 
Sbjct: 520 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 579

Query: 350 ACNHTGLVEKG 360
           A  + G +  G
Sbjct: 580 AWANIGNLSLG 590



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 25/277 (9%)

Query: 197 FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AANIAA 255
           F    H    + NA I  + + G    A+ L  +     L  N     C+++   A   +
Sbjct: 328 FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSY---CSVLQLCAEKKS 384

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           L  GK  H+  +     +D  +G  L+  Y  CG +     +FDK+    +  WN ++  
Sbjct: 385 LEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSE 444

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           YA+ G   E++  F++M+  G+  N  T   +L      G V+       + K     +L
Sbjct: 445 YAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVK-------ECKRVHGYVL 497

Query: 376 K---PEHYACMVDLLSRSGRFK--EAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELG 428
           K     + A +  L++   +F   E+   L+D   +P +  W +++ GC ++  S   L 
Sbjct: 498 KLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLE 557

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
            F    IL ++       V L+  +SV   W N+ N+
Sbjct: 558 IFIQMLILGVE-------VDLTTLVSVLVAWANIGNL 587


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 159/466 (34%), Positives = 263/466 (56%), Gaps = 32/466 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+    +S  +VF+ + +  VVS T++I  + ++   + AI LF  M    + P  +   
Sbjct: 399 SKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVT 458

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ +     +L  GK +H +  +  L++N FV +A+ D+Y K                 
Sbjct: 459 SILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAK----------------- 501

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG +K     DA  +F  M  ++V+SWN MIGGY++     EA+ LF EM 
Sbjct: 502 ---------CGSMK-----DAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ 547

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           RE   P+ +T+ C + A A++AAL  G+  H  A++     D +V N+++  Y KCG + 
Sbjct: 548 RES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLV 606

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  +FD +  +++V+W  +I GY  +G G EAI  F +MR+ GI P+ V+ + +L+AC+
Sbjct: 607 LARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACS 666

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+GL+++G+  F+  K E       EHYACMVDLL+R+G   +A +F+  +P  P    W
Sbjct: 667 HSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIW 726

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALL GC+IH +V+L E  A RI  L+PE+   YV+L+N  + A KW+ V  +R+++ ++
Sbjct: 727 GALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQR 786

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G+ + PGCSWIEIK K+++FV GD +     +I  +L+    +++E
Sbjct: 787 GLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKE 832



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 181/375 (48%), Gaps = 46/375 (12%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG           VFD++ +  +     +I  ++   +Y E+I LF +ML L I+P+ 
Sbjct: 196 VKCGD----LKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNS 251

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +TF S++    A+  +  G+Q+H    K+G  S   V ++++  Y     +    R    
Sbjct: 252 YTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYF----VGRKVRC--- 304

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                   A KLF E+  R+V+SWN+MI GY + G ++  + +F
Sbjct: 305 ------------------------AQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIF 340

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYA 286
           I+ML  G+  + +T+    +A ANI  L +GK  H+ ++K    LD  V   N+L+  Y+
Sbjct: 341 IKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIK-AATLDREVRFNNTLLDMYS 399

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCG +  ++ VF+++ E+ +V+W ++I GY + G  + AI+ F+ M+  G+ P+   +  
Sbjct: 400 KCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTS 459

Query: 347 LLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           +L AC   G ++ G   + Y  +  LE    +       + D+ ++ G  K+A +    +
Sbjct: 460 ILNACAINGNLKSGKIVHDYIRENNLETNSFVSN----ALTDMYAKCGSMKDAHDVFSHM 515

Query: 404 PFDPGIGFWKALLGG 418
                I  W  ++GG
Sbjct: 516 KKKDVIS-WNTMIGG 529



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 128/271 (47%), Gaps = 22/271 (8%)

Query: 140 QSNVFVGS--AILDLYIKLSSIEEATRVFEDTHNPNV---------VSYTTMICGLLKRE 188
            SN  +G+  +IL L  +  SI +  RV     +  V         + +  + CG LK  
Sbjct: 145 NSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEG 204

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
           R      +F ++    +  WN MI  YS +G   E++NLF +ML  G+ PN  T    + 
Sbjct: 205 RM-----VFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILK 259

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
             A +A +  G+  H    K        V NSLISFY     +  +  +FD+LT+R++++
Sbjct: 260 CFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVIS 319

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
           WN++I GY +NG  +  IE F +M + G+  +  T++ +  AC + G +  G   +SY  
Sbjct: 320 WNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSI 379

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           +A   D    +      ++D+ S+ G    A
Sbjct: 380 KAATLDR---EVRFNNTLLDMYSKCGDLNSA 407


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 165/510 (32%), Positives = 278/510 (54%), Gaps = 39/510 (7%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           C S  S+    ++H LA  + I ++      LE    +     CG+  D      +VF+E
Sbjct: 51  CASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSK-----CGAMFD----ACKVFEE 101

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  + VS T +I  ++K   +EEA+  F +M+   +   +    S + +  AL+    G
Sbjct: 102 MPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFG 161

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           + +H+   K+G +S++FVG+A+ D+Y K   +E A+ VF                G+   
Sbjct: 162 RSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVF----------------GI--- 202

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                      +   RNVVS+  +I GY +T + E+ +++F+E+ R+G+ PN  T    I
Sbjct: 203 -----------DSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLI 251

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A AN AAL  G   HA  +K     D FV + L+  Y KCG +E ++  FD++ +   +
Sbjct: 252 KACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEI 311

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
            WN+++  + Q+G G++AI+ FERM   G++PN +T + LL  C+H GLVE+G  YF   
Sbjct: 312 AWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSM 371

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
                 +   EHY+C++DLL R+GR KEAKEF+  +PF+P    W + LG C+IH + E+
Sbjct: 372 DKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEM 431

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
           G+ AA +++ L+P++  + V+LSN  +   +W++V ++R  M++  + ++PG SW+++  
Sbjct: 432 GKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGY 491

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           K HVF   D +H     IY  L +  +QI+
Sbjct: 492 KTHVFGAEDWSHPRKSAIYEKLDTLLDQIK 521



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 92/166 (55%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           MP RN+VSW AMI G SQ  +  EA+  F  M   G VP       AI A A++ ++ MG
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           K  H  A+KF    ++FVG++L   Y+KCG+M D+  VF+++  ++ V+W A+I GY++ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           G  EEA+  F++M    +  +   L   L AC      + G S  S
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHS 166


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 254/446 (56%), Gaps = 4/446 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F    + +V   T II   A +  +E+A+  +++ML   + P+ FTF S++     L  
Sbjct: 84  LFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL----KLCP 139

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  GK LH+ A K+G  S+++V + +LD+Y +   +  A ++F+     ++VS T M+  
Sbjct: 140 IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTC 199

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K    + A  LF  M  R+ V WN MI GY+Q G   EA+ LF  ML+    PN  T+
Sbjct: 200 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 259

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A   + AL  G+  H+       + +V VG +L+  Y+KCGS+ED+ LVFDK+ +
Sbjct: 260 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 319

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++V WN++I GYA +G  +EA++ F+ M   G+ P  +T +G+L AC H+G V +G+  
Sbjct: 320 KDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDI 379

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F++ K E     K EHY CMV+LL R+G  ++A E + ++  +P    W  LLG C++H 
Sbjct: 380 FNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHG 439

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
            + LGE     ++  +  +  +Y++LSN  +  G WD V+ +R  MK+ G+ + PGCS I
Sbjct: 440 KIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 499

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVL 509
           E+ +KVH F+ G  NH    EIY +L
Sbjct: 500 EVNNKVHEFLAGGLNHPKRKEIYMML 525



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 152/317 (47%), Gaps = 44/317 (13%)

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
           R + ++ LF    + +V  W A+I G++  G +E+A+N + +ML +G+ PN  T    + 
Sbjct: 77  RLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL- 135

Query: 249 AAANIAALGMGKSFHACAVKF---------LGKLDVFV----------------GNSLIS 283
               +  +  GK+ H+ AVK           G LDV+                   SL+S
Sbjct: 136 ---KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVS 192

Query: 284 F------YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
                  YAK G ++ + ++FD + ER+ V WN +I GY QNG   EA+  F RM     
Sbjct: 193 LTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKA 252

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEA 396
           +PN VT+L +L AC   G +E G   +  + +E+ G+    H    +VD+ S+ G  ++A
Sbjct: 253 KPNEVTVLSVLSACGQLGALESG--RWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDA 310

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLS---N 451
           +  ++D   D  +  W +++ G  +H  S   L  F +   + L P +++   +LS   +
Sbjct: 311 R-LVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGH 369

Query: 452 ALSVAGKWDNVSNIRRE 468
           +  V   WD  + ++ E
Sbjct: 370 SGWVTEGWDIFNKMKDE 386



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 36/274 (13%)

Query: 10  SSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVP 69
           ++ + + + KL  + P   + +Q   +       +RT  +   +      S  Q+FD +P
Sbjct: 127 NAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 186

Query: 70  DLNVVSATTIIGRFAKQHHYE-------------------------------EAIYLFSR 98
           + ++VS T ++  +AK    +                               EA+ LF R
Sbjct: 187 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 246

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           ML    +P+E T  SV+ +   L  L  G+ +H++    G+Q NV VG+A++D+Y K  S
Sbjct: 247 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 306

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGG 214
           +E+A  VF+   + +VV++ +MI G       ++AL+LF+ M     H   +++  ++  
Sbjct: 307 LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSA 366

Query: 215 YSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
              +G   E  ++F +M  E G+ P      C +
Sbjct: 367 CGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMV 400



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YA  G ++ S+ +F +    ++  W A+I G+A  G  E+A+ F+ +M   G+ PN  T 
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131

Query: 345 LGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
             +L  C     +E G +  SQA KL     L       ++D+ +R G    A++    +
Sbjct: 132 SSILKLCP----IEPGKALHSQAVKLGFDSDLYVR--TGLLDVYARGGDVVSAQQLFDTM 185

Query: 404 P 404
           P
Sbjct: 186 P 186


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 169/529 (31%), Positives = 275/529 (51%), Gaps = 76/529 (14%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +++FD +P+ ++V   TII  +A+    + A+ L  RM     RP   T  S++P+   +
Sbjct: 230 YKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADV 289

Query: 122 EDLNLGKQLHAWATKVGLQSNV--------------FVGSA-----------------IL 150
             L +G+ +H ++ + G +S V               VG+A                 ++
Sbjct: 290 GSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMI 349

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL------------------------- 185
           D Y++      A  +F+   +  V      + G L                         
Sbjct: 350 DGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELG 409

Query: 186 --------------KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                         K +R + A ++F+ + H+ +VSWNAMI GY+Q GR  EA++ F +M
Sbjct: 410 SDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKM 469

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             + + P+  T+   I A A ++ L   K  H   ++     +VFV  +L+  YAKCG++
Sbjct: 470 QLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAV 529

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             +  +FD + ER++ TWNA+I GY  +G G+ A+E FE+M+   I+PN VT L +L AC
Sbjct: 530 HTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSAC 589

Query: 352 NHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           +H+GLVE+G+ YF   K +   +P M   +HY  MVDLL R+ R  EA +F+  +P +P 
Sbjct: 590 SHSGLVEEGFQYFGSMKKDYGLEPAM---DHYGAMVDLLGRANRLNEAWDFIQKMPIEPA 646

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           I  + A+LG C+IH NVELGE AA RI  LDP+D   +V+L+N  + A  WD V+ +R  
Sbjct: 647 ISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTT 706

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M++KG+ + PG S +E++++VH F +G  +H    +IYA L +   +I+
Sbjct: 707 MEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIK 755



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 34/307 (11%)

Query: 57  KFSSVHQ---VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           KF S+H+   VF  + D       T++  +A+    ++A+  F RM    +RP  + F  
Sbjct: 121 KFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTY 180

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++       DL  GK++H      G  SNVF  + ++++Y K   +EEA           
Sbjct: 181 LLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEA----------- 229

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                                K+F  MP R++V WN +I GY+Q G  + A+ L + M  
Sbjct: 230 --------------------YKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQE 269

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG  P+  T+   + A A++ +L +G+S H  +++   +  V V  +L+  Y+KCGS+  
Sbjct: 270 EGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGT 329

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           + L+FD++T + +V+WN++I GY QNG    A+E F++M    +    VT++G L AC  
Sbjct: 330 ARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACAD 389

Query: 354 TGLVEKG 360
            G VE+G
Sbjct: 390 LGDVEQG 396



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 42/309 (13%)

Query: 116 PSSTALEDLNLGKQLHAWA---TKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           PS+  LE     K+LH +     K GL S     + ++ L+ K  S+ EA RVF+     
Sbjct: 79  PSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQP---- 134

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                             ED +    E+ H        M+ GY++    ++AV+ F  M 
Sbjct: 135 -----------------IEDKI---DELYH-------TMLKGYARNSSLDDAVSFFCRMR 167

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            +G+ P        +    + A L  GK  H   +      +VF    +++ YAKC  +E
Sbjct: 168 YDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVE 227

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++  +FD++ ER++V WN +I GYAQNG G+ A+E   RM+  G RP+ +T++ +L A  
Sbjct: 228 EAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVA 287

Query: 353 HTGLVEKGYS---YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
             G +  G S   Y  +A  E    +       +VD+ S+ G    A+  ++D      +
Sbjct: 288 DVGSLRIGRSIHGYSMRAGFESFVNVS----TALVDMYSKCGSVGTAR-LIFDRMTGKTV 342

Query: 410 GFWKALLGG 418
             W +++ G
Sbjct: 343 VSWNSMIDG 351



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 31/204 (15%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+  +     ++F+ +    +VS   +I  +A+     EAI  F +M L NI+P  
Sbjct: 419 ISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDS 478

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  SVIP+   L  L   K +H    +  L  NVFV +A++D+Y K             
Sbjct: 479 FTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAK------------- 525

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                        CG +   R     KLF  M  R+V +WNAMI GY   G  + A+ LF
Sbjct: 526 -------------CGAVHTAR-----KLFDMMDERHVTTWNAMIDGYGTHGLGKAALELF 567

Query: 229 IEMLREGLVPNHSTLPCAIIAAAN 252
            +M +E + PN  T  C + A ++
Sbjct: 568 EKMKKEVIKPNEVTFLCVLSACSH 591


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 261/469 (55%), Gaps = 36/469 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D+     ++F E+P+++ +S   +I   A     EE++ LF  +        +F F 
Sbjct: 286 SKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFA 345

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  +    +L +G+Q+H+ A      S V VG++++D+Y K     EA R+F D    
Sbjct: 346 TLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFAD---- 401

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                      + H++ V W A+I GY Q G +E+ + LF+EM 
Sbjct: 402 ---------------------------LAHQSSVPWTALISGYVQKGLHEDGLKLFVEMH 434

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R  +  + +T    + A AN+A+L +GK  H+  ++     +VF G++L+  YAKCGS++
Sbjct: 435 RAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIK 494

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++L +F ++  RN V+WNA+I  YAQNG G  A+  FE+M  +G++PN V+ L +L AC+
Sbjct: 495 EALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACS 554

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLVE+G  YF+   +     L+P  EHYA MVD+L RSGRF EA++ +  +PF+P   
Sbjct: 555 HCGLVEEGLQYFN--SMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEI 612

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREM 469
            W ++L  C+IH N EL   AA ++  +    D + YV +SN  + AG+WD+V  +++ +
Sbjct: 613 MWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKAL 672

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +E+G+ +VP  SW+EIK K HVF   D +H    EI   L    +Q+ E
Sbjct: 673 RERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEE 721



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 170/365 (46%), Gaps = 33/365 (9%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S   S+   +FD +   +VV+ T +IG +A+ + + EA  LF+ M    + P   T  +
Sbjct: 85  KSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLAT 144

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++   T  E +N   Q+H    KVG  S + V +++LD Y K  S+              
Sbjct: 145 LLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSL-------------- 190

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                    GL        A  LF+ M  ++ V++NA++ GYS+ G N +A+NLF +M  
Sbjct: 191 ---------GL--------ACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQD 233

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G  P+  T    + A   +  +  G+  H+  VK     +VFV N+L+ FY+K   + +
Sbjct: 234 LGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVE 293

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +F ++ E + +++N +I   A NGR EE++E F  ++             LL    +
Sbjct: 294 ARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAAN 353

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           +  +E G    SQA + D  + +      +VD+ ++  +F EA     DL     +  W 
Sbjct: 354 SLNLEMGRQIHSQAIVTD-AISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVP-WT 411

Query: 414 ALLGG 418
           AL+ G
Sbjct: 412 ALISG 416



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 144/302 (47%), Gaps = 8/302 (2%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           + + A   K G   N    +  +  +++   +  A ++F++  + NV+S  TMI G LK 
Sbjct: 27  QHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKS 86

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                A  LF  M  R+VV+W  +IGGY+Q  R  EA NLF +M R G+VP+H TL   +
Sbjct: 87  GNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLL 146

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
                  ++      H   VK      + V NSL+  Y K  S+  +  +F  + E++ V
Sbjct: 147 SGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNV 206

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYF 364
           T+NA++ GY++ G   +AI  F +M+  G RP+  T   +L A      +E G   +S+ 
Sbjct: 207 TFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFV 266

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            +        +       ++D  S+  R  EA++  Y++P   GI +   L+  C  +  
Sbjct: 267 VKCNFVWNVFVAN----ALLDFYSKHDRIVEARKLFYEMPEVDGISY-NVLITCCAWNGR 321

Query: 425 VE 426
           VE
Sbjct: 322 VE 323



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 144/330 (43%), Gaps = 84/330 (25%)

Query: 37  QKLETPAIRTDSVS----------CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQ 86
           +++ + AI TD++S            ++ DKF   +++F ++   + V  T +I  + ++
Sbjct: 361 RQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQK 420

Query: 87  HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
             +E+ + LF  M    I     T+ S++ +   L  L LGKQLH+   + G  SNVF G
Sbjct: 421 GLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSG 480

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           SA++D+Y K  SI+EA                               L++FQEMP RN V
Sbjct: 481 SALVDMYAKCGSIKEA-------------------------------LQMFQEMPVRNSV 509

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           SWNA+I  Y+Q G    A+  F +M+  GL PN                          +
Sbjct: 510 SWNALISAYAQNGDGGHALRSFEQMIHSGLQPN--------------------------S 543

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT-----ERNIVTWNAVICGYAQNGR 321
           V FL         S++   + CG +E+ L  F+ +T     E     + +++    ++GR
Sbjct: 544 VSFL---------SILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGR 594

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            +EA +   RM      P+ +    +L +C
Sbjct: 595 FDEAEKLMARM---PFEPDEIMWSSILNSC 621


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/518 (31%), Positives = 276/518 (53%), Gaps = 17/518 (3%)

Query: 3   QLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH 62
            LL  C+    L +L ++H+LA  + +   + SV              C ++  + +   
Sbjct: 19  HLLAQCKK---LRELQRIHALAIAHGLHPHQQSVS--------CKIFRCYADFGRVADAR 67

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FDE+P+ +++S T+++    +  +  EAI LF+R++    RP  F     + +S+   
Sbjct: 68  KLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAG 127

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D  +G+ +H    ++GL   V VG+A++D+Y +    E A +VF+     + V++ +M+ 
Sbjct: 128 DQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLH 187

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G +K    + AL  F ++P R+VV+W A+I G+ Q  +   A+ LF  M+ EG  P H T
Sbjct: 188 GYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVT 247

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A+I AL +G+  H    K    L++ V N+L+  YAK G +E +  VF ++ 
Sbjct: 248 IVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQ 307

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            ++  TW  +I      G G++A+E F+ M   G+ PN VT + +L AC+H+GL+E+G  
Sbjct: 308 SKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIE 367

Query: 363 YFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            F + +     DP +   EHY CM+DLL R G  +EA+  + D+  +P I  W++LL  C
Sbjct: 368 LFDRMRQLYKIDPLL---EHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSAC 424

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
            +  N  L E A + I+  +P D   YV+L N  + + KW     +R++M    + + PG
Sbjct: 425 LVRGNNRLAEIAGKEIVKREPGDDGVYVLLWNMYASSNKWREAREMRQQMLSLKIFKKPG 484

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           CSWIEI   VH F+  D+ H    EIY  L   + Q++
Sbjct: 485 CSWIEIDGAVHEFLVEDKTHDARREIYETLEYMSRQLK 522


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 165/505 (32%), Positives = 265/505 (52%), Gaps = 35/505 (6%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  ++S    ++   FD +P  + VS  T I  F+     +E++ LF RM      P+E
Sbjct: 96  LSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTE 155

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +T  S++ +S  L DL  GKQ+H          NVF+ +A+ D+Y K   IE+A  +F+ 
Sbjct: 156 YTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDC 215

Query: 169 THNPNVVSYTTMICGLLKRE-----------------------------------RFEDA 193
               N+VS+  MI G  K                                     R ++A
Sbjct: 216 LTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEA 275

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
            ++F E   +++V W AM+ GY++ GR E+A+ LF EML E + P+  TL   + + A +
Sbjct: 276 RRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKL 335

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           A+L  G++ H  ++      ++ V ++LI  Y+KCG ++D+  VF+ +  RN+V+WNA+I
Sbjct: 336 ASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMI 395

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            G AQNG  ++A+E FE M     +P+ VT +G+L AC H   +E+G  YF     +   
Sbjct: 396 VGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGM 455

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
               +HYACMV+LL R+GR ++A   + ++  DP    W  LL  C    ++   E AAR
Sbjct: 456 TPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAAR 515

Query: 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFV 493
            +  LDP     Y+MLSN  +  G+W +V+++R  MK K + +  G SWIEI ++VH F 
Sbjct: 516 HLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFT 575

Query: 494 TGDRNHHMNDEIYAVLRSCTEQIRE 518
           + DR H  +++IY  L     +++E
Sbjct: 576 SEDRTHPESEDIYEKLNMLIGKLQE 600



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 135/252 (53%), Gaps = 5/252 (1%)

Query: 123 DLNLGKQLHAWATKVGLQ-SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           ++N  K+L +       Q ++ F+ + +L LY K   + +A  +F+     +  S+  ++
Sbjct: 37  EINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALL 96

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               K    ++    F  MP R+ VS+N  I G+S     +E++ LF  M REG  P   
Sbjct: 97  SAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEY 156

Query: 242 TLPCAIIAAANIAALGMGKSFHACAV--KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           T+   + A+A +  L  GK  H   +   FLG  +VF+ N+L   YAKCG +E +  +FD
Sbjct: 157 TIVSILNASAQLLDLRYGKQIHGSIIVRNFLG--NVFIWNALTDMYAKCGEIEQARWLFD 214

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            LT++N+V+WN +I GYA+NG+ E+ I    +MR++G  P+ VT+  ++ A    G V++
Sbjct: 215 CLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDE 274

Query: 360 GYSYFSQAKLED 371
               FS+ K +D
Sbjct: 275 ARRVFSEFKEKD 286


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 181/549 (32%), Positives = 284/549 (51%), Gaps = 47/549 (8%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  CRS   L  L ++H+      ++T      KL          S  S  D      +
Sbjct: 11  LLTNCRS---LKNLKQVHAYVCKTGLDTDPIIAGKLLLH-------SAVSVPDALDYARR 60

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-SEFTFGSVIPSSTALE 122
           +F   P+ +V    T+I   A+    + ++  F  M      P   F+F  ++ ++ +  
Sbjct: 61  LFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYR 120

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G QLH  A   GL +++FVG+ ++ +Y +   +  A +VFE+   PNVV++  ++ 
Sbjct: 121 SLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVT 180

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM----------- 231
              +    + A  +F  MP RN+ SWN M+ GY++ G  E A  LF+EM           
Sbjct: 181 ACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTM 240

Query: 232 ----------------LRE----GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
                            RE    G+ PN  +L  A+ A A+  A+  GK  H    K   
Sbjct: 241 IVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGF 300

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFE 330
              V V N+L+  Y+KCG++  + LVF+++ E R+IV+W ++I G A +G GEEAI+ F 
Sbjct: 301 LWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFH 360

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLS 388
            M  +GIRP+G+  + +L+AC+H GL+EKGY YF   K++D   ++P  EHY CMVDL  
Sbjct: 361 EMEESGIRPDGIAFISILYACSHAGLIEKGYEYFY--KMKDIYNIEPAIEHYGCMVDLYG 418

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVM 448
           R+G+  +A EF+  +P  P    W+ LLG C IH NV+L E    R+  LDP +   +V+
Sbjct: 419 RAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVL 478

Query: 449 LSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAV 508
           LSN  +VAGKW +V+ +RR M ++ M + PG S IE+   ++ FV G+  + + +E Y  
Sbjct: 479 LSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEK 538

Query: 509 LRSCTEQIR 517
           L+    ++R
Sbjct: 539 LKEIMLKLR 547



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 145/374 (38%), Gaps = 98/374 (26%)

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ +  +L++L   KQ+HA+  K GL ++  +   +L        +  A  V      P
Sbjct: 10  SLLTNCRSLKNL---KQVHAYVCKTGLDTDPIIAGKLL--------LHSAVSV------P 52

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           + + Y               A +LF   P+ +V   N +I G +++   + ++  F+EM 
Sbjct: 53  DALDY---------------ARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMR 97

Query: 233 REGLVPNHS-TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           R    P  S +    + AAA+  +L  G   H  A+       +FVG +L+S Y++CG +
Sbjct: 98  RRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFV 157

Query: 292 EDSLLVFDKLTERNIVTWNAVI-------------------------------CGYAQNG 320
             +  VF+++ E N+V WNAV+                                GY + G
Sbjct: 158 AFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAG 217

Query: 321 RGE-------------------------------EAIEFFERMRINGIRPNGVTLLGLLW 349
             E                               EA  FF  ++  G+RPN V+L G L 
Sbjct: 218 ELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALS 277

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           AC   G +E G        +E  G L        ++D  S+ G    A+     +P    
Sbjct: 278 ACADAGAIEFG--KILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRS 335

Query: 409 IGFWKALLGGCQIH 422
           I  W +++ G  +H
Sbjct: 336 IVSWTSMIAGLAMH 349


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 258/465 (55%), Gaps = 32/465 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+    +   +VF ++ D  +VS T+II  + ++  Y +AI LF  M    +RP  +T  
Sbjct: 342 SKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVT 401

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ +      L+ G+ +H++  K G+ SN+ V +A++++Y K  S+EEA  VF      
Sbjct: 402 SIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF------ 455

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                     ++P +++VSWN MIGGYSQ     EA+ LF++M 
Sbjct: 456 -------------------------SKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ 490

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           ++   P+  T+ C + A A +AAL  G+  H   ++     D+ V  +L+  YAKCG + 
Sbjct: 491 KQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLV 549

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            + L+FD + ++++++W  +I GY  +G G EAI  F  MRI GI P+  +   +L AC+
Sbjct: 550 LAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACS 609

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+GL+ +G+ +F+  + E     K EHYAC+VDLL+R G   +A +F+  +P  P    W
Sbjct: 610 HSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIW 669

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
             LL GC+IH +V+L E  A  I  L+P++   YV+L+N  + A KW+ V  +R+ M+++
Sbjct: 670 GVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKR 729

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           G  + PGCSWIE+  K ++FV G+  H    +I  +L   T Q++
Sbjct: 730 GFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQ 774



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 194/415 (46%), Gaps = 42/415 (10%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +L +C    SL    ++HS+  +  I   +A   KL         V+CG          +
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMY-----VNCGD----LVQGRK 150

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++ +  V     ++  +AK  ++ E++ LF +M  L +  + +TF  V+    AL  
Sbjct: 151 IFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGK 210

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +   K++H +  K+G  SN  V ++++  Y K   +E A       HN            
Sbjct: 211 VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESA-------HN------------ 251

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                       LF E+   +VVSWN+MI G    G +   + +FI+ML  G+  + +TL
Sbjct: 252 ------------LFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTL 299

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              ++A ANI  L +G++ H   VK     +V   N+L+  Y+KCG++  +  VF K+ +
Sbjct: 300 VSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGD 359

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
             IV+W ++I  Y + G   +AI  F+ M+  G+RP+  T+  ++ AC  +  ++KG   
Sbjct: 360 TTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDV 419

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            S       G   P   A ++++ ++ G  +EA+     +P    +  W  ++GG
Sbjct: 420 HSYVIKNGMGSNLPVTNA-LINMYAKCGSVEEARLVFSKIPVKDIVS-WNTMIGG 472



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 141/312 (45%), Gaps = 39/312 (12%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           ++ SV+      + L  GK++H+     G+  +  +G+ ++ +Y+               
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVN-------------- 141

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       CG L + R     K+F ++ +  V  WN ++  Y++ G   E+V+LF 
Sbjct: 142 ------------CGDLVQGR-----KIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFK 184

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M + G+V N  T  C +   A +  +   K  H   +K     +  V NSLI+ Y K G
Sbjct: 185 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 244

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            +E +  +FD+L+E ++V+WN++I G   NG     +E F +M I G+  +  TL+ +L 
Sbjct: 245 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 304

Query: 350 ACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           AC + G +  G   + +  +A   +  +        ++D+ S+ G    A E    +  D
Sbjct: 305 ACANIGNLSLGRALHGFGVKACFSEEVVFSNT----LLDMYSKCGNLNGATEVFVKMG-D 359

Query: 407 PGIGFWKALLGG 418
             I  W +++  
Sbjct: 360 TTIVSWTSIIAA 371



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 97/232 (41%), Gaps = 16/232 (6%)

Query: 197 FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AANIAA 255
           F    H    + NA I  + + G    A+ L  +     L  N     C+++   A   +
Sbjct: 53  FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSY---CSVLQLCAEKKS 109

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           L  GK  H+  +     +D  +G  L+  Y  CG +     +FDK+    +  WN ++  
Sbjct: 110 LEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSE 169

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           YA+ G   E++  F++M+  G+  N  T   +L      G V+       + K     +L
Sbjct: 170 YAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVK-------ECKRVHGYVL 222

Query: 376 K---PEHYACMVDLLSRSGRFK--EAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           K     + A +  L++   +F   E+   L+D   +P +  W +++ GC ++
Sbjct: 223 KLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 274


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 259/463 (55%), Gaps = 39/463 (8%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSST 119
           V +VFD +P  +VVS  T+I  FA+   Y EA+ +   M     ++P  FT  S++P   
Sbjct: 179 VKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFA 238

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              D+N GK++H +A + G   +VF+GS+++D+Y K +                      
Sbjct: 239 EHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCN---------------------- 276

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                    R E +L+ F  +P ++ +SWN++I G  Q G  +  +  F  ML+E + P 
Sbjct: 277 ---------RLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPM 327

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             +    I A A++ AL +G+  H C V+     + F+ +SL+  YAKCG+++ +  VFD
Sbjct: 328 AVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFD 387

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ +R++V W A+I G A +G   +A+  FE M  +G+RP  V  + +L AC+H GLV++
Sbjct: 388 RIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDE 447

Query: 360 GYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKAL 415
           G+ YF+  + +    PG+   EHYA + DLL R+GR +EA +F+ ++    P    W  L
Sbjct: 448 GWRYFNSMERDFGIAPGL---EHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSIL 504

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C+ H +VEL E    ++L++D E++ +YV++SN  S A +W + + +R  M++KG+ 
Sbjct: 505 LAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLK 564

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + P CSWIE+ ++VH F+ GD++H   D+I   L    EQ+ +
Sbjct: 565 KTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEK 607



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 165/333 (49%), Gaps = 25/333 (7%)

Query: 96  FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
           F+ M  L++ P+   F S++ +ST L+   L   LHA   ++GL S++++ +A+++ Y K
Sbjct: 98  FNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAK 157

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
             +  +   VF       +                +   K+F  MP R+VVSWN +I G+
Sbjct: 158 FHNAGKVFDVFPKRGESGI----------------DCVKKVFDMMPVRDVVSWNTVIAGF 201

Query: 216 SQTGRNEEAVNLFIEMLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
           +Q G   EA+++  EM + G L P+  TL   +   A    +  GK  H  AV+     D
Sbjct: 202 AQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGD 261

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
           VF+G+SLI  YAKC  +E SL  F  L  ++ ++WN++I G  QNG  +  + FF RM  
Sbjct: 262 VFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLK 321

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
             ++P  V+   ++ AC H   +  G   +    +   +D   +     + +VD+ ++ G
Sbjct: 322 ENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIA----SSLVDMYAKCG 377

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
             K A+ +++D      +  W A++ GC +H +
Sbjct: 378 NIKMAR-YVFDRIDKRDMVAWTAIIMGCAMHGH 409



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 24/249 (9%)

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           +W+++I  Y+       + + F  M    + PN    P  + A+  +    +  S HAC 
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 267 VKFLGKLDVFVGNSLISFYAK---CGSMEDSL------------LVFDKLTERNIVTWNA 311
           V+     D+++ N+LI+ YAK    G + D               VFD +  R++V+WN 
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 312 VICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKG---YSYFSQA 367
           VI G+AQNG   EA++    M  NG ++P+  TL  +L        V KG   + Y  + 
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
             +    +     + ++D+ ++  R + +    Y LP    I  W +++ GC  +   + 
Sbjct: 257 GFDGDVFIG----SSLIDMYAKCNRLECSLRAFYILPRKDAIS-WNSIIAGCVQNGEFDR 311

Query: 428 GEFAARRIL 436
           G    RR+L
Sbjct: 312 GLGFFRRML 320


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/461 (34%), Positives = 270/461 (58%), Gaps = 12/461 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  +      +VFD++   ++VS   +IG + +   + EA+ L+ ++ +   + ++ T
Sbjct: 255 CGSSHE----AREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKAT 310

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F S++ + ++++ L  G+ +H+   + GL S V V +A++++Y K  S+EEA +VF    
Sbjct: 311 FVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMK 370

Query: 171 NPNVVSYTTMICGLLKRERFEDALK---LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           N + V+++T+I         +DA K   +F  +  R+ + WNAMI  Y Q G    A+ +
Sbjct: 371 NRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKI 430

Query: 228 FIEML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           F EM    GL P+  T    + A A++  L   K+ HA   +   + +V V N+LI+ YA
Sbjct: 431 FREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYA 490

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           +CGS+E++  +F    E+ +V+W A++  ++Q GR  EA++ F+ M + G++P+ VT   
Sbjct: 491 RCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTS 550

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +L+ C H G +E+G+ YF+   + +   L P  +H+A MVDLL RSGR  +AKE L  +P
Sbjct: 551 ILFVCTHGGSLEQGWRYFTD--MAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMP 608

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
           F+P    W   L  C+IH  +ELGE AA R+  LDP   + Y+ +SN  +  G W+ V++
Sbjct: 609 FEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVAS 668

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           +R++M+E+G+ ++PG S+IE+  K+H F +G + H   DEI
Sbjct: 669 VRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEI 709



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 190/423 (44%), Gaps = 56/423 (13%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDS-VSCGSESDKFSS 60
           + +LC C S   + +   LH          ++    + E   +  ++ +S   + D    
Sbjct: 11  LTVLCSCSSCGDVAEGRALH----------ERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 61  VHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
              VF+ +     NVVS   +I  +A+  H  EA+ L+ RM L  +     TF SV+ + 
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           ++L     G+++H      GL S   + +A++ +Y +  S+ +A R              
Sbjct: 121 SSLAQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKR-------------- 163

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                            +FQ +  R+  SWNA+I  +SQ+G    A+ +F EM +  + P
Sbjct: 164 -----------------MFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKP 205

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           N +T    I   +    L  G+  HA  V      D+ V  +LI+ Y KCGS  ++  VF
Sbjct: 206 NSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVF 265

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           DK+ +R++V+WN +I  Y QNG   EA+E ++++ + G +    T + +L AC+    + 
Sbjct: 266 DKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALA 325

Query: 359 KG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           +G   +S+  +  L+    +       +V++ ++ G  +EA++    +     +  W  L
Sbjct: 326 QGRLVHSHILERGLDSEVAVA----TALVNMYAKCGSLEEARKVFNAMKNRDAVA-WSTL 380

Query: 416 LGG 418
           +G 
Sbjct: 381 IGA 383



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/431 (22%), Positives = 187/431 (43%), Gaps = 80/431 (18%)

Query: 57  KFSSV---HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +F SV    ++F  +   +  S   +I   ++   +  A+ +F  M   +++P+  T+ +
Sbjct: 154 RFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKC-DMKPNSTTYIN 212

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VI   +  E L  G+++HA     G  S++ V +A++++Y K  S  EA  VF+     +
Sbjct: 213 VISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRD 272

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           +VS+  MI   ++   F +AL+L+Q++                                 
Sbjct: 273 MVSWNVMIGCYVQNGDFHEALELYQKLD-------------------------------M 301

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG     +T    + A +++ AL  G+  H+  ++     +V V  +L++ YAKCGS+E+
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEE 361

Query: 294 ----------------------------------SLLVFDKLTERNIVTWNAVICGYAQN 319
                                             +  VFD+L  R+ + WNA+I  Y QN
Sbjct: 362 ARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQN 421

Query: 320 GRGEEAIEFFERMR-INGIRPNGVTLLGLLWACNHTGL---VEKGYSYFSQAKLEDPGML 375
           G    A++ F  M    G++P+ VT + +L AC   G    V+  ++  S+++LE   ++
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVV 481

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAAR 433
                  ++++ +R G  +EA E L+    +  +  W A++     +      L  F   
Sbjct: 482 TNT----LINMYARCGSLEEA-ERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEM 536

Query: 434 RILALDPEDVS 444
            +  + P+DV+
Sbjct: 537 DLEGVKPDDVT 547



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 121/251 (48%), Gaps = 41/251 (16%)

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
           ++ +P   TF +V+ S ++  D+  G+ LH        + +  VG+A++ +Y K  S+ +
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 162 ATRVFE--DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
           A  VFE  D    NVVS                               WNAMI  Y+Q G
Sbjct: 61  ARSVFESMDWRQRNVVS-------------------------------WNAMIAAYAQNG 89

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF--V 277
            + EA+ L+  M  +GL  +H T    + A +++A    G+  H     F   LD F  +
Sbjct: 90  HSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---QGREIHNRV--FYSGLDSFQSL 144

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N+L++ YA+ GS+ D+  +F  L  R+  +WNAVI  ++Q+G    A+  F+ M+ + +
Sbjct: 145 ANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-M 203

Query: 338 RPNGVTLLGLL 348
           +PN  T + ++
Sbjct: 204 KPNSTTYINVI 214



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 2/117 (1%)

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P++ T    + + ++   +  G++ H        + D  VGN+LIS Y KC S+ D+  V
Sbjct: 5   PDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSV 64

Query: 298 FDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           F+ +   +RN+V+WNA+I  YAQNG   EA+  + RM + G+  + VT + +L AC+
Sbjct: 65  FESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 115/266 (43%), Gaps = 40/266 (15%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           L   S + +LA   L+ +           A+ T  V+  ++        +VF+ + + + 
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 74  VSATTIIGRFAKQHHYEE----------------------------------AIYLFSRM 99
           V+ +T+IG +A   + ++                                  A+ +F  M
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREM 434

Query: 100 L-LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
                ++P   TF +V+ +  +L  L+  K LHA  ++  L+SNV V + ++++Y +  S
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGG 214
           +EEA R+F       VVS+T M+    +  R+ +AL LFQEM    V    V++ +++  
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFV 554

Query: 215 YSQTGRNEEAVNLFIEMLR-EGLVPN 239
            +  G  E+    F +M    GL P 
Sbjct: 555 CTHGGSLEQGWRYFTDMAELHGLAPT 580


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 257/457 (56%), Gaps = 1/457 (0%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H+VF  +P  +VVS   +I  FA     ++A+ LF  M + +++P+  T  SV+ +    
Sbjct: 228 HRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKK 287

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            DL  G+ + ++    G   ++ + +A+LD+Y+K   I +A  +F      ++VS+TTM+
Sbjct: 288 IDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTML 347

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNH 240
            G  K   +++A  +F  MPH+   +WNA+I  Y Q G+   A++LF EM L +   P+ 
Sbjct: 348 DGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDE 407

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL CA+ A+A + A+  G   H    K    L+  +  SL+  YAKCG++  ++ VF  
Sbjct: 408 VTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHA 467

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +  +++  W+A+I   A  G+G+ A++ F  M    I+PN VT   +L ACNH GLV +G
Sbjct: 468 VERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEG 527

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              F Q +     + + +HY C+VD+  R+G  ++A  F+  +P  P    W ALLG C 
Sbjct: 528 EQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACS 587

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            H NVEL E A + +L L+P +  ++V+LSN  + AG W+ VSN+R+ M++  + + P C
Sbjct: 588 RHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWC 647

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           S I++   VH F+ GD +H  + +IY+ L   +E+ +
Sbjct: 648 SSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFK 684



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIAAA 251
           A  +F ++P  N+  WN +I GY+ +    ++  +F+ ML      PN  T P    AA+
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            +  L +G   H   +K     D+F+ NSLI+FY   G+ + +  VF  +  +++V+WNA
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNA 244

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I  +A  G  ++A+  F+ M +  ++PN +T++ +L AC     ++  +  +  + +E+
Sbjct: 245 MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKK--IDLEFGRWICSYIEN 302

Query: 372 PGMLKPEHYA---CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            G    EH      M+D+  + G   +AK+ L++   +  I  W  +L G
Sbjct: 303 NGF--TEHLILNNAMLDMYVKCGCINDAKD-LFNKMSEKDIVSWTTMLDG 349



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 172/373 (46%), Gaps = 28/373 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEFTFGSVIPSSTALE 122
           VF+++P  N+    T+I  +A      ++  +F  ML   +  P++FTF  +  +++ L+
Sbjct: 128 VFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLK 187

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L+LG  LH    K  L S++F+ +++++ Y    + + A RVF +    +VVS+  MI 
Sbjct: 188 VLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMIN 247

Query: 183 GLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNE--EAVNLFIEM--LRE 234
                   + AL LFQEM  +    NV++  +++   ++    E    +  +IE     E
Sbjct: 248 AFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTE 307

Query: 235 GLVPNHSTL----PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
            L+ N++ L     C  I  A      M +             D+    +++  +AK G+
Sbjct: 308 HLILNNAMLDMYVKCGCINDAKDLFNKMSEK------------DIVSWTTMLDGHAKLGN 355

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTLLGLLW 349
            +++  +FD +  +    WNA+I  Y QNG+   A+  F  M+++   +P+ VTL+  L 
Sbjct: 356 YDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALC 415

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           A    G ++ G+      K  D   L       ++D+ ++ G   +A E  + +     +
Sbjct: 416 ASAQLGAIDFGHWIHVYIKKHDIN-LNCHLATSLLDMYAKCGNLNKAMEVFHAVE-RKDV 473

Query: 410 GFWKALLGGCQIH 422
             W A++G   ++
Sbjct: 474 YVWSAMIGALAMY 486


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/535 (33%), Positives = 273/535 (51%), Gaps = 75/535 (14%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRF--AKQHHYEEAIYLFSRMLLLNIRP 106
           +S  + +   ++  +VFD +P  +VVS   ++     A +HH   A  LF   +     P
Sbjct: 22  ISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAM-----P 76

Query: 107 SE--FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           S    ++ S+I    A  DL+      A A K     NV   +A+L   ++L   ++A R
Sbjct: 77  SRDVVSWNSIIAGCLAHGDLDAASAYFAGAPK----RNVATWNAMLAGLLRLGRADDADR 132

Query: 165 VFEDTHNPNVVSYTTMICGLLKRER-------------------------------FEDA 193
           +F +    NVVSYTTM+ GL +R                                 F +A
Sbjct: 133 LFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEA 192

Query: 194 LKLFQEMPHRNVV-------------------------------SWNAMIGGYSQTGRNE 222
            KLF+ MP +NVV                               SWN MI GY   G  E
Sbjct: 193 TKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGE 252

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+ L   M REG+ P+H+TL   + A + +A L  GKS HA A+K + +  +   N+L+
Sbjct: 253 EAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALM 312

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + Y+KCG++ +S LVF  L  ++IV+WN +I  YAQ+G+ ++ I  F  M + G+ P+ +
Sbjct: 313 TMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDI 372

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T L +L AC H G V+     F     +     + EHYAC+VD+LSR+G+ ++A  ++ D
Sbjct: 373 TFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKD 432

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P +     W +LLG CQ+H NV+LGE AA+ ++  D E    YV+LSN  + AG W  V
Sbjct: 433 MPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYAAAGMWGQV 492

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + +R +MKE+G+ + PG SW EI ++VH+FV GD +H    +I + LR  +  +R
Sbjct: 493 NQVRGQMKERGVKKQPGYSWTEIANEVHMFVGGDASHPEMRKIISELRKISFHMR 547


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 253/446 (56%), Gaps = 4/446 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F    + +V   T II   A +  +E+A+  +++ML   + P+ FTF S++     L  
Sbjct: 31  LFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL----KLCP 86

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  GK LH+ A K+G  S+++V + +LD+Y +   +  A ++F+     ++VS T M+  
Sbjct: 87  IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTC 146

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K    + A  LF  M  R+ V WN MI GY+Q G   EA+ LF  ML+    PN  T+
Sbjct: 147 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 206

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A   + AL  G+  H+       + +V VG +L+  Y+KCGS+ED+ LVFDK+ +
Sbjct: 207 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 266

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++V WN++I GYA  G  +EA++ F+ M   G+ P  +T +G+L AC H+G V +G+  
Sbjct: 267 KDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDI 326

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F++ K E     K EHY CMV+LL R+G  ++A E + ++  +P    W  LLG C++H 
Sbjct: 327 FNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHG 386

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
            + LGE     ++  +  +  +Y++LSN  +  G WD V+ +R  MK+ G+ + PGCS I
Sbjct: 387 KIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 446

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVL 509
           E+ +KVH F+ G  NH    EIY +L
Sbjct: 447 EVNNKVHEFLAGGLNHPKRKEIYMML 472



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 156/340 (45%), Gaps = 44/340 (12%)

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
            ED   P  V    +        R + ++ LF    + +V  W A+I G++  G +E+A+
Sbjct: 1   MEDKKPPAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQAL 60

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF---------LGKLDVF 276
           N + +ML +G+ PN  T    +     +  +  GK+ H+ AVK           G LDV+
Sbjct: 61  NFYAQMLTQGVEPNAFTFSSIL----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVY 116

Query: 277 VG----------------------NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
                                    ++++ YAK G ++ + ++FD + ER+ V WN +I 
Sbjct: 117 ARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMID 176

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
           GY QNG   EA+  F RM     +PN VT+L +L AC   G +E G   +  + +E+ G+
Sbjct: 177 GYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG--RWVHSYIENNGI 234

Query: 375 LKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFA 431
               H    +VD+ S+ G  ++A+  ++D   D  +  W +++ G  +   S   L  F 
Sbjct: 235 QFNVHVGTALVDMYSKCGSLEDAR-LVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFK 293

Query: 432 ARRILALDPEDVSSYVMLS---NALSVAGKWDNVSNIRRE 468
           +   + L P +++   +LS   ++  V   WD  + ++ E
Sbjct: 294 SMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDE 333



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 36/274 (13%)

Query: 10  SSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVP 69
           ++ + + + KL  + P   + +Q   +       +RT  +   +      S  Q+FD +P
Sbjct: 74  NAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133

Query: 70  DLNVVSATTIIGRFAKQHHYE-------------------------------EAIYLFSR 98
           + ++VS T ++  +AK    +                               EA+ LF R
Sbjct: 134 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 193

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           ML    +P+E T  SV+ +   L  L  G+ +H++    G+Q NV VG+A++D+Y K  S
Sbjct: 194 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGG 214
           +E+A  VF+   + +VV++ +MI G       ++AL+LF+ M     H   +++  ++  
Sbjct: 254 LEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSA 313

Query: 215 YSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
              +G   E  ++F +M  E G+ P      C +
Sbjct: 314 CGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMV 347


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/508 (32%), Positives = 277/508 (54%), Gaps = 35/508 (6%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           LN+     ++     + T       L +  +RT  +   ++ D      ++FDE+P  NV
Sbjct: 97  LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNV 156

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS T +I  ++++    EA+ LF  ML  +  P+ FTF +++ S         G+Q+H+ 
Sbjct: 157 VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSI 216

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
           A K   +S++FVGS++LD+Y K                      +  IC         DA
Sbjct: 217 AIKRNYESHMFVGSSLLDMYAK----------------------SGRIC---------DA 245

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             +F  +P R+VV+  A+I GY+Q G +EEA+ LF ++  EG+  N  T    + A + +
Sbjct: 246 HGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGL 305

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           AAL  GK  H+  ++      V + NSLI  Y+KCG++  +  +FD + ER  ++WNA++
Sbjct: 306 AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAML 365

Query: 314 CGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
            GY+++G   E +E F+ MR  N ++P+ +T L +L  C+H  L + G   F        
Sbjct: 366 VGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKD 425

Query: 373 GMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
           G ++P+  HY C+VDLL R+GR +EA +F+  +PF P    W +LLG C++HS+VE+G  
Sbjct: 426 G-IEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGII 484

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
             +++L L+PE+  +YV+LSN  + AGKW+++ NIR  M+EK +T+ PG SW+E+   VH
Sbjct: 485 VGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVH 544

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            F   D  H   +E+   ++  + + +E
Sbjct: 545 TFHASDHTHPRREEVAKKVKELSIKFKE 572



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 147/301 (48%), Gaps = 25/301 (8%)

Query: 148 AILDLYIKLSSIEEATRV----FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
            IL+  +   +I E  RV     +  + P+V   T +I    K +   DA ++F EMP +
Sbjct: 95  TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQK 154

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           NVVSW AMI  YSQ G   EA+NLF+EMLR    PNH T    + +         G+  H
Sbjct: 155 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIH 214

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
           + A+K   +  +FVG+SL+  YAK G + D+  VF  L ER++V   A+I GYAQ G  E
Sbjct: 215 SIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDE 274

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-- 381
           EA++ F +++I G+  N VT   +L A +       G +  +  K     +L+   Y+  
Sbjct: 275 EALKLFRQLQIEGMNSNSVTYASVLTALS-------GLAALNHGKQVHSHVLRSGQYSYV 327

Query: 382 ----CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA 437
                ++D+ S+ G    A+     +P    I  W A+L G   H         AR +L 
Sbjct: 328 VLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS-WNAMLVGYSKHG-------MAREVLE 379

Query: 438 L 438
           L
Sbjct: 380 L 380


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/471 (33%), Positives = 269/471 (57%), Gaps = 32/471 (6%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPS 107
           +S  +++ +     ++FD++ + +  S T +   + +   +EEA+ LF  M    N + +
Sbjct: 162 ISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCN 221

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           +FT  S + +S A++ L+LGK++H    ++GL  +  V SA+ D+Y K  SI EA  +F+
Sbjct: 222 KFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFD 281

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
            T + +VVS+T MI                                 Y + GR EE   L
Sbjct: 282 KTVDRDVVSWTAMI-------------------------------DRYFKEGRREEGFAL 310

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F ++L+ G+ PN  T    + A A+ AA  +GK  H    +       F  ++L+  Y K
Sbjct: 311 FSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTK 370

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG+++++  VF+ +   ++V+W ++I GYAQNG+ +EA++FFE +  +G +P+ +T +G+
Sbjct: 371 CGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGV 430

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L AC H GLV+KG  YF   K +       +HYAC++DLLSRSGR +EA++ +  +P +P
Sbjct: 431 LSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEP 490

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W +LLGGC+IH N++L + AA  +  ++PE+ ++Y  L+N  + AG W  V+ +R+
Sbjct: 491 DKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRK 550

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            M  +G+ + PG SWIEIK +VHVF+ GD +H  + EI+  L   +++++E
Sbjct: 551 VMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKE 601



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 177/353 (50%), Gaps = 18/353 (5%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLN---------IRPSEFTFGSVIPSSTALEDLNLGKQ 129
           ++ R  K ++++EAI +      L           RPS  T+ +++     L  L+ G +
Sbjct: 51  LVKRLCKDNNFKEAIDILCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMK 110

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +HA     G    V + + ILD+YIK +S+  A R+F++    ++ S+  MI G  K  R
Sbjct: 111 VHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGR 170

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAII 248
            ++A KLF +M  R+  SW AM  GY +  ++EEA+ LF  M R E    N  T+  A+ 
Sbjct: 171 LQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALA 230

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A+A I +L +GK  H   ++    LD  V ++L   Y KCGS+ ++  +FDK  +R++V+
Sbjct: 231 ASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVS 290

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFS 365
           W A+I  Y + GR EE    F  +  +GI PN  T  G+L AC      E G   + Y +
Sbjct: 291 WTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMT 350

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +    DP        + +V + ++ G  K A+     +P  P +  W +L+ G
Sbjct: 351 RIGF-DPSSFAA---STLVHMYTKCGNIKNARRVFNGMP-RPDLVSWTSLISG 398


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 268/451 (59%), Gaps = 42/451 (9%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVVS T +I    +    ++A+ LFS+M    ++P+ FT+ +++     +       ++H
Sbjct: 361 NVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPV----FVSEMH 416

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   + +  VG+A+LD Y+KL                N +                
Sbjct: 417 AEVIKTNYERSSSVGTALLDAYVKLG---------------NTI---------------- 445

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           DA+K+F+ +  +++++W+AM+ GY+QTG  EEA  LF ++++EG+ PN  T    I A A
Sbjct: 446 DAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACA 505

Query: 252 N-IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           +  AA   GK FHA A+K      + V ++L++ YAK G+++ +  VF +  ER++V+WN
Sbjct: 506 SPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWN 565

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I GY+Q+G+ ++A+E F+ M+   +  + VT +G++ AC H GLVEKG  YF+    +
Sbjct: 566 SMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMIND 625

Query: 371 ---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
              +P M   +HY+CM+DL SR+G  ++A   + ++PF PG   W+ LLG  ++H NVEL
Sbjct: 626 HHINPTM---KHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVEL 682

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
           GE AA ++++L PED ++YV+LSN  + AG W   +N+R+ M ++ + + PG SWIE+K+
Sbjct: 683 GELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKN 742

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           K + F+ GD  H ++++IY+ L   + ++++
Sbjct: 743 KTYSFLAGDLTHPLSNQIYSKLSELSIRLKD 773



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 172/362 (47%), Gaps = 38/362 (10%)

Query: 62  HQVFDEVPD--LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           H +FD++P     +     ++  +++    +EA+ LF  +L  +++P E T   V     
Sbjct: 45  HNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICA 104

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              D  LG+Q+H    K GL  +V VG++++D+Y+K  ++ +  RVF++    NVVS+T+
Sbjct: 105 GSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTS 164

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           ++ G                       SWN + G   +         LF +M  EG++PN
Sbjct: 165 LLAGY----------------------SWNGLYGYVWE---------LFCQMQYEGVLPN 193

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T+   I A  N   +G+G   HA  VK   +  + V NSLIS Y++ G + D+  VFD
Sbjct: 194 RYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFD 253

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           K+  R+ VTWN++I GY +NG+  E  E F +M++ G++P  +T   ++ +C    L E 
Sbjct: 254 KMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSC--ASLREL 311

Query: 360 GYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
                 Q K    G    +    A MV  LS+     +A      +     +  W A++ 
Sbjct: 312 ALVKLMQCKALKSGFTTDQIVITALMV-ALSKCKEMDDALSLFSLMEEGKNVVSWTAMIS 370

Query: 418 GC 419
           GC
Sbjct: 371 GC 372



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 146/310 (47%), Gaps = 39/310 (12%)

Query: 47  DSVSCGS-------ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           D VS G+       +++  +   +VFDE+ + NVVS T+++  ++    Y     LF +M
Sbjct: 126 DHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQM 185

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
               + P+ +T  +VI +      + +G Q+HA   K G +  + V ++++ LY +L  +
Sbjct: 186 QYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGML 245

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
            +A  VF+     + V++ +M                               I GY + G
Sbjct: 246 RDARDVFDKMEIRDWVTWNSM-------------------------------IAGYVRNG 274

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
           ++ E   +F +M   G+ P H T    I + A++  L + K     A+K     D  V  
Sbjct: 275 QDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT 334

Query: 280 SLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           +L+   +KC  M+D+L +F  + E +N+V+W A+I G  QNG  ++A+  F +MR  G++
Sbjct: 335 ALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVK 394

Query: 339 PNGVTLLGLL 348
           PN  T   +L
Sbjct: 395 PNHFTYSAIL 404



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 193 ALKLFQEMPHR--NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
           A  LF ++PHR   +   N ++  YS+  + +EA+NLF+ +L   L P+ STL C     
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 251 ANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
           A      +G+  H   VKF G +D V VG SL+  Y K  ++ D   VFD++ ERN+V+W
Sbjct: 104 AGSLDGKLGRQVHCQCVKF-GLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
            +++ GY+ NG      E F +M+  G+ PN  T+  ++ A  + G+V  G    +    
Sbjct: 163 TSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVK 222

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                  P  +  ++ L SR G  ++A++    +     +  W +++ G
Sbjct: 223 HGFEEAIPV-FNSLISLYSRLGMLRDARDVFDKMEIRDWVT-WNSMIAG 269


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 258/478 (53%), Gaps = 33/478 (6%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P +R   +S  S S  F    ++FD   D +VV+ T +I  F +     EA+  F  M  
Sbjct: 138 PFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKK 197

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIE 160
             +  +E T  SV+ ++  +ED+  G+ +H    + G ++ +VF+GS+++D+Y K S   
Sbjct: 198 TGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSC-- 255

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                        ++DA K+F EMP RNVV+W A+I GY Q+  
Sbjct: 256 -----------------------------YDDAQKVFDEMPSRNVVTWTALIAGYVQSRC 286

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            ++ + +F EML+  + PN  TL   + A A++ AL  G+  H   +K   +++   G +
Sbjct: 287 FDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTT 346

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI  Y KCG +E+++LVF++L E+N+ TW A+I G+A +G   +A + F  M  + + PN
Sbjct: 347 LIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPN 406

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            VT + +L AC H GLVE+G   F   K       K +HYACMVDL  R G  +EAK  +
Sbjct: 407 EVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALI 466

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             +P +P    W AL G C +H + ELG++AA R++ L P     Y +L+N  S +  WD
Sbjct: 467 ERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWD 526

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHM-NDEIYAVLRSCTEQIR 517
            V+ +R++MK++ + + PG SWIE+K K+  F+  D    + +D++Y  L +   Q+R
Sbjct: 527 EVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKPLESDDLYKTLDTVGVQMR 584



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 8/234 (3%)

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQ--TGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
           +F  A +L  ++   ++  W+++IG +S   T     +   +  M R G++P+  T P  
Sbjct: 51  QFRYARRLLCQLQTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPL 110

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A   +      + FHA  VKF    D FV NSLIS Y+  G  + +  +FD   ++++
Sbjct: 111 LKAVFKLRDSNPFQ-FHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDV 169

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           VTW A+I G+ +NG   EA+ +F  M+  G+  N +T++ +L A      V  G S    
Sbjct: 170 VTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSV--H 227

Query: 367 AKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               + G +K + +  + +VD+  +   + +A++   ++P    +  W AL+ G
Sbjct: 228 GLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP-SRNVVTWTALIAG 280


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/510 (33%), Positives = 281/510 (55%), Gaps = 45/510 (8%)

Query: 48  SVSCGSESDKFS-SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP 106
           S SC  +S  ++ S+ + FD  P+L V +A  +I   A+   +E ++  F  ML L+IRP
Sbjct: 80  SSSCSLKSLDYALSIFRCFDH-PNLFVFNA--LIRGLAENSRFEGSVSHFVLMLRLSIRP 136

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS--------- 157
              T   V+ S  AL D+ LG+ LH    K+GL+ + FV  +++D+Y+K+          
Sbjct: 137 DRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLF 196

Query: 158 --------------------------SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
                                      + +A  +FE     N  S+ ++I G ++    +
Sbjct: 197 DESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLD 256

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
            A +LF +MP +NVVSW  MI G+SQ G +E+A+++F  ML EG+ PN  T+  A++A  
Sbjct: 257 RARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACT 316

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            I AL +G+  H        +L+  +G +L+  YAKCG+++ +  VF +   ++++TW+ 
Sbjct: 317 KIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSV 376

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE- 370
           +I G+A +G  ++A++ F +M+  GI P+ V  L +L AC+H+G V++G ++F   +L+ 
Sbjct: 377 MIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDY 436

Query: 371 --DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
             +P M   +HY  +VDLL R+GR  EA  F+  +P +P    W AL   C+ H N+E+ 
Sbjct: 437 SIEPTM---KHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMA 493

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
           E  A ++L L+P+   SYV LSN  +  G+W++V  +R  MK +G+ + PG S+IE++ +
Sbjct: 494 ELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQ 553

Query: 489 VHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           VH FV GD  H   +EI   L   T   ++
Sbjct: 554 VHSFVAGDHAHVRAEEISLKLEEITASAKQ 583



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 147/364 (40%), Gaps = 77/364 (21%)

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T +I      +  + AL +F+   H N+  +NA+I G ++  R E +V+ F+ MLR  + 
Sbjct: 76  TQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIR 135

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  TLP  + + A +  +G+G+  H   +K   + D FV  SL+  Y K G +   L +
Sbjct: 136 PDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQL 195

Query: 298 FDK-----------------------------------LTERNIVTWNAVICGYAQN--- 319
           FD+                                   + ERN  +WN++I G+ +N   
Sbjct: 196 FDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDL 255

Query: 320 ----------------------------GRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
                                       G  E+A+  F RM   G+RPN +T++  L AC
Sbjct: 256 DRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLAC 315

Query: 352 NHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
              G ++ G   ++Y S    +    L       +VD+ ++ G  K A     +      
Sbjct: 316 TKIGALQVGERIHNYLSSNGFQ----LNRGIGTALVDMYAKCGNIKSASRVFVETK-GKD 370

Query: 409 IGFWKALLGGCQIHS--NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           +  W  ++ G  IH   +  L  F   +   ++P++V    +L+ A S +G  D   N  
Sbjct: 371 LLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILT-ACSHSGNVDQGLNFF 429

Query: 467 REMK 470
             M+
Sbjct: 430 ESMR 433



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 33/215 (15%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           V   LIS      S++ +L +F      N+  +NA+I G A+N R E ++  F  M    
Sbjct: 74  VVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLS 133

Query: 337 IRPNGVTLLGLLWA-----------CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385
           IRP+ +TL  +L +           C H G+++ G  + S  ++             +VD
Sbjct: 134 IRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVS------------LVD 181

Query: 386 LLSRSGRFKEAKEFLYDLPFD---PGIGFWKALLGGCQIHSNVELGEF--AARRILALDP 440
           +  + G      +   + P       I  W  L+ GC      ++G+   AA    A+  
Sbjct: 182 MYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGC-----CKVGDLSKAASLFEAMPE 236

Query: 441 EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
            +  S+  L N     G  D    +  +M EK + 
Sbjct: 237 RNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVV 271


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 270/488 (55%), Gaps = 39/488 (7%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           P+L + +A  I G     +   E + ++ +ML   I P  +T   V+ +      +  G+
Sbjct: 102 PNLPLYNAI-IRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGE 160

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK-- 186
           ++H  A K+GL S+V+V + ++ +Y     I  A +VF+ +   ++VS+TTMI G +K  
Sbjct: 161 EVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMG 220

Query: 187 --RE---------------------------RFEDA---LKLFQEMPHRNVVSWNAMIGG 214
             RE                           +  DA    K+FQEMP +NVVSWN+MI G
Sbjct: 221 FAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISG 280

Query: 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
            +Q G+ +E++ +F +M R G+ P+  TL   + + AN+  L +GK  HA   +   + D
Sbjct: 281 LAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRAD 340

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
            F+GN+L+  YAKCGS++ +  VF  +  +++ ++ A+I G A +G+G +A++ F  M  
Sbjct: 341 GFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPK 400

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGR 392
            GI P+ VT +G+L AC+H GLVE+G  YF    +     L+P  EHY CMVDLL R+G 
Sbjct: 401 MGIEPDEVTFVGVLTACSHVGLVEEGRKYFED--MSTIYNLRPQLEHYGCMVDLLGRAGL 458

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
             EA+EF+ ++P +P      ALLG C+IH  VELGE   ++I  ++P    +YV++SN 
Sbjct: 459 INEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNI 518

Query: 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
            S A +W +   +R+ MKE+ + + PGCS IE+   +H F  GD++H    EIY +L   
Sbjct: 519 YSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEI 578

Query: 513 TEQIREFE 520
              ++  E
Sbjct: 579 MSHLKNNE 586



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 100/174 (57%), Gaps = 4/174 (2%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VF E+P  NVVS  ++I   A++  ++E++Y+F +M  L ++P + T  +V+ S   L
Sbjct: 260 RKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANL 319

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L LGK +HA+  +  ++++ F+G+A++D+Y K  SI++A  VF+  +  +V SYT MI
Sbjct: 320 GVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMI 379

Query: 182 CGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEM 231
            GL    +   AL LF EMP   +    V++  ++   S  G  EE    F +M
Sbjct: 380 VGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDM 433



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNE-EAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           AL L  ++   N+  +NA+I G + +  +  E + ++ +ML +G+VP++ T+P  + A A
Sbjct: 92  ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 151

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
              A+  G+  H  A+K     DV+V N+L+  YA C  +  +  VFD   +R++V+W  
Sbjct: 152 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 211

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I GY + G   E +  +       IR + V L   +        ++ G + F++   ++
Sbjct: 212 MIQGYVKMGFAREGVGLYI------IRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQE 265

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEF---LYDLPFDPGIGFWKALLGGCQIHSNVELG 428
             +     +  M+  L++ G+FKE+      +  L   P      A+L  C     +ELG
Sbjct: 266 MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG 325

Query: 429 EF 430
           ++
Sbjct: 326 KW 327


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 169/462 (36%), Positives = 256/462 (55%), Gaps = 38/462 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYE-----EAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           Q+F   P+ NVV    +I  F +    +     EA+ LFS+M    I+PS+FTF S+I  
Sbjct: 269 QLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKI 328

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              +E    GKQ+HA   K  +QS+ F+GS +++LY  L S E                 
Sbjct: 329 CNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTE----------------- 371

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                         D LK F   P  ++VSW  MI GY+Q G+ E A+ LF E+L  G  
Sbjct: 372 --------------DQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKK 417

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLL 296
           P+   +   + A A++AA   G+  H  AVK  +G L + V NS IS YAK G+++ + +
Sbjct: 418 PDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAI-VQNSQISMYAKSGNLDSAKI 476

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F+++   ++V+W+ +IC  AQ+G  ++AI  FE M+  GI PN +T LG+L AC+H GL
Sbjct: 477 TFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGL 536

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VE+G  Y+   K +    +  +H  C+VDLLSR+GR  +AK F+ +  F      W+ LL
Sbjct: 537 VEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLL 596

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
            GC+I+ ++  G+  A +++ LDP++ SSYV+L N  + AG     + IR  MK++G+ +
Sbjct: 597 SGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRK 656

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            PG SWIE+ ++VH FV GD +H M+  IY  L    E+ R+
Sbjct: 657 EPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLEKKRK 698



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 184/441 (41%), Gaps = 79/441 (17%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+  +  +  ++FD + + +V+S   +I  +     Y +AI LFS   +  ++  +F++ 
Sbjct: 55  SKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYA 114

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+ +   ++D  LGK +H  A   GL   VF+ + ++D+Y K   I+ A  +FE +   
Sbjct: 115 GVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDEL 174

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPH---------------------RNVVSWNAM 211
           + VS+ ++I G  +   +E+ LKL  +M H                      N+VS+   
Sbjct: 175 DNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKT 234

Query: 212 IGGYS--------------------QTGRNEEAVNL------------------------ 227
           + GY+                    +TG   +A+ L                        
Sbjct: 235 LHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTED 294

Query: 228 ------------FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
                       F +M R+G+ P+  T    I    +I A   GK  HA   K   + D 
Sbjct: 295 IDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDE 354

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           F+G++LI  Y+  GS ED L  F+   + +IV+W  +I GYAQNG+ E A+  F  +  +
Sbjct: 355 FIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLAS 414

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
           G +P+   +  +L AC        G      A     G L     +  + + ++SG    
Sbjct: 415 GKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNS-QISMYAKSGNLDS 473

Query: 396 AKEFLYDLPFDPGIGFWKALL 416
           AK    ++  +P +  W  ++
Sbjct: 474 AKITFEEIK-NPDVVSWSVMI 493



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 98/187 (52%), Gaps = 8/187 (4%)

Query: 52  GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           GS  D+     + F+  P L++VS TT+I  +A+   +E A+ LF  +L    +P EF  
Sbjct: 368 GSTEDQL----KCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFII 423

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            +++ +   +     G+Q+H +A K G+ +   V ++ + +Y K  +++ A   FE+  N
Sbjct: 424 TTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKN 483

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNL 227
           P+VVS++ MIC   +    +DA+ LF+ M     H N +++  ++   S  G  EE +  
Sbjct: 484 PDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRY 543

Query: 228 FIEMLRE 234
           +  M ++
Sbjct: 544 YESMKKD 550



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 41/67 (61%)

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+K G M ++  +FD+++ER+++++N +I GY   G   +AI  F   R+  ++ +  + 
Sbjct: 54  YSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSY 113

Query: 345 LGLLWAC 351
            G+L AC
Sbjct: 114 AGVLSAC 120


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 253/465 (54%), Gaps = 31/465 (6%)

Query: 52  GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           G ES  + S+ +VFDE+ + + VS  T+I   A+   ++EA+ +   M      P  FT 
Sbjct: 114 GLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTL 173

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            +V+P      D+  G  +H +A K G  ++VFVGS+++D+Y   + ++ + +VF+    
Sbjct: 174 STVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDS--- 230

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                             F D           + V WN+M+ GY+Q G  EEA+ +F  M
Sbjct: 231 ------------------FSDC----------DAVLWNSMLAGYAQNGSVEEALGIFRRM 262

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           L+ G+ P   T    I A  N++ L +GK  HA  ++     ++F+ +SLI  Y KCG++
Sbjct: 263 LQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNV 322

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           + +  VF+ +   +IV+W A+I GYA +G   EA   FERM +  ++PN +T L +L AC
Sbjct: 323 DIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTAC 382

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GLV+ G+ YF+    +   +   EH A + D L R+G   EA  F+ ++   P    
Sbjct: 383 SHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSV 442

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W  LL  C++H N  L E  A++I  L+P+ + S+V+LSN  S +G+W+  + +R+ M+ 
Sbjct: 443 WSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRI 502

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           KGM + P CSWIE+K+K+HVF+  D++H   D I   L   +EQ+
Sbjct: 503 KGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQM 547



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 169/345 (48%), Gaps = 23/345 (6%)

Query: 84  AKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV---IPSSTALEDLNLGKQLHAWATKVGLQ 140
           A Q  +  AI LF +M   ++ P      S+   + S   L    L   LHA A + G  
Sbjct: 23  ASQGQFLHAISLFLQMRA-SVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSF 81

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           ++ F  +A+L+L IKL            T+ P+         G L+   +E   K+F EM
Sbjct: 82  ADRFTANALLNLCIKLPGFHHPF----GTNGPSGE-------GGLESAAYESMRKVFDEM 130

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
             R+ VSWN +I G ++  R++EA+++  EM R+G +P+  TL   +   A  A +  G 
Sbjct: 131 LERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGM 190

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
             H  A+K     DVFVG+SLI  YA C  M+ S+ VFD  ++ + V WN+++ GYAQNG
Sbjct: 191 VVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNG 250

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKP 377
             EEA+  F RM   G+RP  VT   L+ A  +  L+  G   ++Y  +A+  D   +  
Sbjct: 251 SVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFIS- 309

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              + ++D+  + G    A+     +   P I  W A++ G  +H
Sbjct: 310 ---SSLIDMYCKCGNVDIARRVFNGIQ-SPDIVSWTAMIMGYALH 350


>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
          Length = 485

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/451 (37%), Positives = 252/451 (55%), Gaps = 4/451 (0%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
           +HQ  ++      VS T+ I   ++     EA   F+ M L  + P+  T  +++     
Sbjct: 17  LHQKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCAD 76

Query: 121 LEDLNLGKQLHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            E    G  LH +A K+GL  N V VG+AIL +Y K     +A  VF+   + N V++ T
Sbjct: 77  CEPF--GDSLHGYACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNT 134

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           MI G ++  R +DA K+F EMP R+++SW AMI G+ + G +EEA+  F EM   G+ P+
Sbjct: 135 MIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPD 194

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           +  +  A+ A AN+ AL  G   H   V    K +V V NSLI  Y +CG +E +  VFD
Sbjct: 195 YVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFD 254

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ +R +V+WN+VI G+A NG   E++ +F RM+    +P+ VT  G L AC+H GLVE+
Sbjct: 255 EMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGALTACSHVGLVEE 314

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G  YF   K +     + EHY C+VDL SR+GR +EA + +  +P  P      +LL  C
Sbjct: 315 GVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVESMPMKPNEVVIGSLLAAC 374

Query: 420 QIHSN-VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           + H N  EL E   +R+  L  +  S+YV+LSN  +  G+W+  S +RR+MK  G+ + P
Sbjct: 375 RTHGNDTELAERMMKRLSELKVKGHSNYVILSNMYAADGQWEGASKMRRKMKGLGLKKQP 434

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           G S IEI  + HVF+ GD  H  N  I  VL
Sbjct: 435 GFSSIEIDDRTHVFMAGDSAHVENGYIREVL 465



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 110/248 (44%), Gaps = 32/248 (12%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S +     +VFDE+P+ +++S T +I  F K+  +EEA+  F  M +  ++P      + 
Sbjct: 142 SGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWFREMQVSGVKPDYVAVIAA 201

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + +   L  L+ G  +H +      ++NV V ++++DLY +   +E A +VF++     V
Sbjct: 202 LAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTV 261

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           VS                               WN++I G++  G   E++  F  M  E
Sbjct: 262 VS-------------------------------WNSVIVGFAANGHAHESLVYFRRMQEE 290

Query: 235 GLVPNHSTLPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
              P+  T   A+ A +++  +  G + F A    +     +     L+  Y++ G +E+
Sbjct: 291 RFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEE 350

Query: 294 SLLVFDKL 301
           +L V + +
Sbjct: 351 ALKVVESM 358


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 148/437 (33%), Positives = 251/437 (57%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +V  ++ + N+     +I   +   + E + + + + L   + P   T   ++ +   LE
Sbjct: 72  RVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLE 131

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +  +G Q H  A K G + + +V ++++ +Y  +  I  A  VF+     +VVS+T MI 
Sbjct: 132 NAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIA 191

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G  +    + A +LF  MP RN+V+W+ MI GY++    E+AV  F  +  EG+V N + 
Sbjct: 192 GYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETV 251

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   I + A++ AL MG+  H   ++    L++ +G +++  YA+CG++E +++VF++L 
Sbjct: 252 MVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLP 311

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E++++ W A+I G A +G  E+A+ +F  M   G  P  +T   +L AC+H G+VE+G  
Sbjct: 312 EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLE 371

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            F   K +     + EHY CMVDLL R+G+ ++A++F+  +P  P    W+ALLG C+IH
Sbjct: 372 IFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIH 431

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            NVE+GE   + +L + PE    YV+LSN  + A KW +V+ +R+ MK+KG+ + PG S 
Sbjct: 432 KNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSL 491

Query: 483 IEIKSKVHVFVTGDRNH 499
           IEI  KVH F  GD+ H
Sbjct: 492 IEIDGKVHEFTIGDKTH 508



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 143/314 (45%), Gaps = 42/314 (13%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A+++  ++ + N+  +NA+I G S +   E + + +I+ LR GL+P++ T P  + A A 
Sbjct: 70  AIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQ 129

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           +    MG   H  A+K   + D +V NSL+  YA  G +  +  VF ++   ++V+W  +
Sbjct: 130 LENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCM 189

Query: 313 IC-------------------------------GYAQNGRGEEAIEFFERMRINGIRPNG 341
           I                                GYA+N   E+A+E FE ++  G+  N 
Sbjct: 190 IAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANE 249

Query: 342 VTLLGLLWACNHTGLV---EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
             ++G++ +C H G +   EK + Y  + KL    +L       +VD+ +R G  ++A  
Sbjct: 250 TVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILG----TAVVDMYARCGNVEKAVM 305

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVA 456
               LP +  +  W AL+ G  +H   E  L  F+        P D++   +L+ A S A
Sbjct: 306 VFEQLP-EKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLT-ACSHA 363

Query: 457 GKWDNVSNIRREMK 470
           G  +    I   MK
Sbjct: 364 GMVERGLEIFESMK 377



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 5/193 (2%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  ++FD +P+ N+V+ +T+I  +A+ + +E+A+  F  +    +  +E     VI S  
Sbjct: 201 SARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCA 260

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            L  L +G++ H +  +  L  N+ +G+A++D+Y +  ++E+A  VFE     +V+ +T 
Sbjct: 261 HLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTA 320

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEAVNLFIEMLRE- 234
           +I GL      E AL  F EM  +  V    ++ A++   S  G  E  + +F  M R+ 
Sbjct: 321 LIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDH 380

Query: 235 GLVPNHSTLPCAI 247
           G+ P      C +
Sbjct: 381 GVEPRLEHYGCMV 393


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/504 (30%), Positives = 280/504 (55%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           L  +SK+ +      I    + +  ++ P I+T  ++  +   +      +FD++   + 
Sbjct: 128 LKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDA 187

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           V+   II  + +  HY++A+ LF  M   +++P      +V+ +     +L+ G+ +H +
Sbjct: 188 VAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEF 247

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
               G   +  + +A++++Y    +++ A ++++   + +++  T M+ G  K    +DA
Sbjct: 248 VKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDA 307

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             +F +M  R++V W+AMI GY+++ + +EA+ LF EML++  VP+  T+   I A +++
Sbjct: 308 RFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHV 367

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
            AL      H    +      + V N+LI  YAKCG++  +  VF+ +  +N+++W+++I
Sbjct: 368 GALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMI 427

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
             +A +G  + AI+ F RM+   I PNGVT +G+L+AC H GLVE+G   FS    E   
Sbjct: 428 NAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGI 487

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
               EHY CMVDL  R+   ++A E +  +PF P +  W +L+  CQ+H   ELGEFAA+
Sbjct: 488 SPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAK 547

Query: 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFV 493
           R+L L+P+   + V+LSN  +   +W++V  IR+ M  KG+++    S IEI ++VH+F+
Sbjct: 548 RLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFM 607

Query: 494 TGDRNHHMNDEIYAVLRSCTEQIR 517
             DR H  +DEIY  L     +++
Sbjct: 608 MADRYHKQSDEIYEKLDEVVSKLK 631



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 193/389 (49%), Gaps = 15/389 (3%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALE 122
           VF ++P+ +   +  ++   ++    E+ I+L+  +  +N      F+F S++ + + + 
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             N G ++H  A+K+G   + F+ + ++ +Y     I +A  +F+   +P+ V++  +I 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           G  +   ++DAL+LF++M   ++    V    ++      G N        E +++    
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAG-NLSYGRTIHEFVKDNGYA 254

Query: 239 NHSTLPCAIIAA-ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
             S L  A+I   AN  A+ + +  +      L    + V  +++S YAK G ++D+  +
Sbjct: 255 IDSHLQTALINMYANCGAMDLARKIY----DGLSSKHLIVSTAMLSGYAKLGMVKDARFI 310

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD++ ER++V W+A+I GYA++ + +EA++ F+ M      P+ +T+L ++ AC+H G +
Sbjct: 311 FDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGAL 370

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            +     +       G     + A ++D+ ++ G   +A+E   ++P    I  W +++ 
Sbjct: 371 AQANWIHTYVDRSGFGRALSVNNA-LIDMYAKCGNLVKAREVFENMPRKNVIS-WSSMIN 428

Query: 418 GCQIHSNVELGEFAARRI--LALDPEDVS 444
              +H N +      RR+  + ++P  V+
Sbjct: 429 AFAMHGNADSAIKLFRRMKEVNIEPNGVT 457


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 258/462 (55%), Gaps = 17/462 (3%)

Query: 63  QVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRML------LLNIRPSEFTFGSV 114
           ++ D +P    NVVS  T+I   A+     EA+ +F+++          +    FT  S 
Sbjct: 117 RLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSA 176

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
             +   L D    ++LH      G++  V + +A++D Y K   +E+A  VF+     + 
Sbjct: 177 ASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDS 236

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           VS+T+MI G  +    +DA+++F  MP ++ ++W A+I G+ Q G  E A+ LF  M  E
Sbjct: 237 VSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGE 296

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK-FLGK--LDVFVGNSLISFYAKCGSM 291
           G+VP    L   + A A +  +  GK  H   ++  +G    +VF+ N+LI  Y+KCG M
Sbjct: 297 GVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDM 356

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             ++ VFD++ ER+I++WN+++ G++ NG+G++++  FERM  + ++P  VT L +L AC
Sbjct: 357 VAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTAC 416

Query: 352 NHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           +H GLV  G        ++D G+  + EHYA  +D L R+ + +EA EF+  L    G+G
Sbjct: 417 SHAGLVSDGRRILE--SMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLG 474

Query: 411 F---WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W ALLG C +H N+E+ E  A  +  L+PE+   YVMLSN  S AG+WD+   +R 
Sbjct: 475 TTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRA 534

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            MK KG+ +    SWIE++   H+FV  D +HH  +EIY +L
Sbjct: 535 LMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHHEANEIYEML 576



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 127/275 (46%), Gaps = 40/275 (14%)

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           LG  +HA   K  L  +  + + ++ LY  L +   +   F+D  + N  SY +++  L 
Sbjct: 47  LGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALA 106

Query: 186 K-RERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHS 241
           + R    DAL+L   MP   RNVVS+N +I   ++ GR  EA+ +F ++ R+ GL     
Sbjct: 107 RGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQV 166

Query: 242 TLPCAIIAAANIAALGMG-----KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            +    + +A  A  G+      +  H   V    ++ V + N+++  Y+K G +ED+  
Sbjct: 167 AIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARG 226

Query: 297 VFDKLTERNIVTWNAVICGYA-------------------------------QNGRGEEA 325
           VFD++T R+ V+W ++I GY                                QNG  E A
Sbjct: 227 VFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIA 286

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +E FERM   G+ P    L+  L AC   GLV +G
Sbjct: 287 LELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 156/484 (32%), Positives = 276/484 (57%), Gaps = 49/484 (10%)

Query: 53  SESDKFSSVHQVF-----DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           S+S  F +  ++F     + +P L++V+ T +I  ++++    EA+ +F +M+     P+
Sbjct: 304 SQSGNFKAAFELFKNMRKENIP-LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPN 362

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKV----------GLQSNVFVGSAILDLYIKLS 157
             T  SV+ +  +L   + G ++HA++ K           G   ++ V +A++D+Y K  
Sbjct: 363 CVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 422

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
           S + A  +F+D                               +  RNVV+W  MIGG++Q
Sbjct: 423 SFKAARSIFDDI-----------------------------PLEERNVVTWTVMIGGHAQ 453

Query: 218 TGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKL 273
            G + +A+ LF+EM+ E  G+ PN  T+ C ++A A++AA+ +GK  HA  ++       
Sbjct: 454 YGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSS 513

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
             FV N LI+ Y+KCG ++ +  VFD +++++ ++W +++ GY  +GRG EA++ F++MR
Sbjct: 514 AYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 573

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
             G  P+ +T L +L+AC+H G+V++G SYF     +     + EHYA  +DLL+R GR 
Sbjct: 574 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRL 633

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
            +A + + D+P +P    W ALL  C++HSNVEL E A  +++ ++ E+  SY ++SN  
Sbjct: 634 DKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 693

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           + AG+W +V+ IR  MK+ G+ + PGCSW++ +     F  GDR+H ++ +IYA+L S  
Sbjct: 694 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 753

Query: 514 EQIR 517
           ++I+
Sbjct: 754 DRIK 757



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 176/413 (42%), Gaps = 93/413 (22%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           V + V     V    +I    KQ   + AI +  RML    R   FT   V+ +   L  
Sbjct: 73  VLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPS 132

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G   H      G +SNVF+ +A++ +Y +  S+EEA+ +F++     +         
Sbjct: 133 YRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGI--------- 183

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML----------R 233
                               +V+SWN+++  + ++     A++LF +M           R
Sbjct: 184 -------------------DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNER 224

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             ++   + LP    A  ++ A+   K  H  A++    LDVFVGN+LI  YAKCG ME+
Sbjct: 225 SDIISIVNILP----ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 280

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-------------------- 333
           ++ VF+ +  +++V+WNA++ GY+Q+G  + A E F+ MR                    
Sbjct: 281 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQ 340

Query: 334 ---------------INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKL------ 369
                           +G  PN VT++ +L AC   G   +G   ++Y  +  L      
Sbjct: 341 RGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDND 400

Query: 370 ---EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALLGG 418
              ED  ++    Y  ++D+ S+   FK A+    D+P +   +  W  ++GG
Sbjct: 401 FGGEDEDLMV---YNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGG 450



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 141/300 (47%), Gaps = 18/300 (6%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           AL + + +     V WN +I  + + GR + A+N+   MLR G   +H TLP  + A   
Sbjct: 70  ALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGE 129

Query: 253 IAALGMGKSFHA--CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER---NIV 307
           + +   G +FH   C   F  + +VF+ N+L++ Y++CGS+E++ ++FD++T+R   +++
Sbjct: 130 LPSYRCGSAFHGLICCNGF--ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVI 187

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRI------NGIRPNGVTLLGLLWACNHTGLVEKGY 361
           +WN+++  + ++     A++ F +M +         R + ++++ +L AC     V +  
Sbjct: 188 SWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTK 247

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
                A + +   L       ++D  ++ G  + A +    + F   +  W A++ G   
Sbjct: 248 EVHGNA-IRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS-WNAMVAGYSQ 305

Query: 422 HSNVELGEFAARRILALD-PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
             N +      + +   + P D+ ++  +    S  G      N+ R+M   G   +P C
Sbjct: 306 SGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG--SLPNC 363



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +G  +++ Y  CG+ + +LLV +++T    V WN +I  + + GR + AI    RM   G
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 337 IRPNGVTLLGLLWAC 351
            R +  TL  +L AC
Sbjct: 113 TRLDHFTLPHVLKAC 127


>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
          Length = 436

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 248/425 (58%), Gaps = 9/425 (2%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           ML     P  ++F  V+ +   L  L+ G+++H+   K+G+  +VFV +A++  +    +
Sbjct: 1   MLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGA 60

Query: 159 IEEATRVFE--DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216
           +E A  VF+       +VVS+ +MI G L+  R+E ALK+F  +PHRN V W +MI GY+
Sbjct: 61  VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYA 120

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
           Q+   +EA+ LF EM   G   + +T+ C + A  +  AL  G+  H    +   ++D+ 
Sbjct: 121 QSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLN 180

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-IN 335
             N+LI  Y+KCG ++ +L +F  LT+ +I +W+AVI G A NG  ++A+  F +M  I+
Sbjct: 181 ARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMIS 240

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGR 392
            IRPN +T LG+L ACNH G V+KG  YF   +Q     PG+   EHY CMVDLL R+  
Sbjct: 241 DIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGI---EHYGCMVDLLGRANL 297

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
             EA++F+  LP  P +  W++LL  C+ H N+EL EFAA++I  L+P    + V+LSN 
Sbjct: 298 LVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNV 357

Query: 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
            + A +W +V  +R++M  + + + PGCS++EI   VH     DR+H     IY  + S 
Sbjct: 358 YASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISI 417

Query: 513 TEQIR 517
            + ++
Sbjct: 418 NKALQ 422



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 8/178 (4%)

Query: 29  IETQKASVQKLETPAIRTDSVSCGS------ESDKFSSVHQVFDEVPDLNVVSATTIIGR 82
           +E  +A    L  PA+  D VS  S      +S ++    +VFD +P  N V  T++I  
Sbjct: 61  VEAARAVFDML--PALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAG 118

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142
           +A+   ++EAI LF  M +        T   V+ +      L  G+ +H +  +  ++ +
Sbjct: 119 YAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMD 178

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           +   +A++ +Y K   I++A  +F     P++ S++ +I GL      + AL LF +M
Sbjct: 179 LNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQM 236


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/430 (36%), Positives = 249/430 (57%), Gaps = 4/430 (0%)

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           ++ LF RM +L++ P+ FTF  +    +     +LG+Q H    K   + +VFV ++I+ 
Sbjct: 76  SVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIR 135

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
            Y     + +A  VF+++   +VVS+ +MI G ++     +AL LF +M  RN +SWN M
Sbjct: 136 FYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMM 195

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           I GY+Q G+ +EA+ LF EM      PN + L   + A + + AL  G   H    K   
Sbjct: 196 ISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCV 255

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           ++D  +  +LI  YAKCGS++ ++  F    +R++  + A I G A NG  EEA++ FE+
Sbjct: 256 RVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQ 315

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSR 389
           M+  GI P+GV+ + +L AC+H G VEKG+ YF  A + D   ++PE  HYACMVDLL R
Sbjct: 316 MKGEGISPDGVSYIAVLCACSHAGWVEKGFHYF--ASMSDVHGIRPELDHYACMVDLLGR 373

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML 449
           +G  +EA++F+  +P  P    W ALLG C+++ N E+G+     ++  D      Y++L
Sbjct: 374 AGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILL 433

Query: 450 SNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           SN  + + K ++   +R+ M+ + + RVPGCS IE+   VH F +GDR+H   +EIY + 
Sbjct: 434 SNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMW 493

Query: 510 RSCTEQIREF 519
               ++I++F
Sbjct: 494 EEIVKEIKKF 503



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 28/299 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F ++ + N +S   +I  +A+    +EA+ LF  M +L+  P+     SV+ + + L  
Sbjct: 180 LFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGA 239

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+ G  +H +  K  ++ +  + +A++D+Y K  SI+ A + F  +   +V +YT  I G
Sbjct: 240 LDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISG 299

Query: 184 LLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVP 238
           L      E+AL+LF++M    +    VS+ A++   S  G  E+  + F  M    G+ P
Sbjct: 300 LAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRP 359

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAV---------KFLGKLDVFVGNSLISFYAKCG 289
                 C +        L   + F A              LG   V+ GN      A+ G
Sbjct: 360 ELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVY-GN------AEMG 412

Query: 290 SMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI-RPNGVTLL 345
               SLLV        R I+  N     YA++ +GE+A +  + MR   + R  G +L+
Sbjct: 413 QRVGSLLVESDQNHDGRYILLSNI----YAESMKGEDAEQVRKTMRRRKVDRVPGCSLI 467


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 252/446 (56%), Gaps = 32/446 (7%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS  ++I  + +     +A+ LF  M+   +    FT  SV+ + T LEDL+ G Q H  
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             K G   N  VGS ++DLY K                          CG        D 
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSK--------------------------CG----GGMSDC 295

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRN-EEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
            K+F+E+   ++V WN M+ GYSQ     E+A+  F +M   G  PN  +  C I A +N
Sbjct: 296 RKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSN 355

Query: 253 IAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +++   GK  H+ A+K  +    + V N+LI+ Y+KCG+++D+  +FD++ E N V+ N+
Sbjct: 356 LSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNS 415

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I GYAQ+G   E++  F+ M    I P  +T + +L AC HTG VE+G++YF+  K + 
Sbjct: 416 MIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKF 475

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
               + EHY+CM+DLL R+G+  EA+  +  +PF+PG   W +LLG C+ H N+EL   A
Sbjct: 476 NIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKA 535

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A ++L L+P + + YV+LSN  + AG+W+ V+ +R+ M+++G+ + PGCSWIE+K ++HV
Sbjct: 536 ANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHV 595

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIR 517
           FV  D +H M  EIY  L   + +++
Sbjct: 596 FVAEDSSHPMIKEIYEFLEEMSGKMK 621



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 193/419 (46%), Gaps = 44/419 (10%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
            HQ+FD++P+ ++VS  T+I  +A       A+ LFS M  + +    FT  +VI  +  
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVI--TAC 150

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNVVSYTT 179
            +D+ L  QLH+ A   G  S V V +A+L  Y K   +++A RVF       + VS+ +
Sbjct: 151 CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           MI    + +    AL LFQ                               EM+R GL  +
Sbjct: 211 MIVAYGQHQEGSKALGLFQ-------------------------------EMVRRGLNVD 239

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC-GSMEDSLLVF 298
             TL   + A   +  L  G  FH   +K     +  VG+ LI  Y+KC G M D   VF
Sbjct: 240 MFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVF 299

Query: 299 DKLTERNIVTWNAVICGYAQNGRG-EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           +++TE ++V WN ++ GY+QN    E+A+E F +M+  G RPN  + + ++ AC++    
Sbjct: 300 EEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSP 359

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            +G    S A   D    +      ++ + S+ G  ++A+  L+D   +       +++ 
Sbjct: 360 SQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARR-LFDRMAEHNTVSLNSMIA 418

Query: 418 GCQIHS----NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           G   H     ++ L ++   R +A  P  + +++ + +A +  G+ +   N    MKEK
Sbjct: 419 GYAQHGIEMESLHLFQWMLERQIA--PTSI-TFISVLSACAHTGRVEEGWNYFNMMKEK 474



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 146/310 (47%), Gaps = 6/310 (1%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  ++ +  A  DL+ GK LH+   K  +  + +  +  + LY K   +  A + F+D  
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +PNV S+  +I    K  R   A +LF ++P  ++VS+N +I  Y+  G    A+ LF  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   GL  +  TL   I A  +   +G+    H+ AV       V V N+L+++Y K G 
Sbjct: 131 MREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 291 MEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           ++D+  VF  +   R+ V+WN++I  Y Q+  G +A+  F+ M   G+  +  TL  +L 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPG 408
           A      +  G  +  Q  L   G  +  H    ++DL S+ G        +++   +P 
Sbjct: 249 AFTCLEDLSGGLQFHGQ--LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 409 IGFWKALLGG 418
           +  W  ++ G
Sbjct: 307 LVLWNTMVSG 316



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           ++  C +  S ++  ++HSLA    I + + SV      A+      CG+  D      +
Sbjct: 349 VISACSNLSSPSQGKQIHSLALKSDIPSNRISVDN----ALIAMYSKCGNLQD----ARR 400

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD + + N VS  ++I  +A+     E+++LF  ML   I P+  TF SV+ +      
Sbjct: 401 LFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGR 460

Query: 124 LNLG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSYTTMI 181
           +  G    +    K  ++      S ++DL  +   + EA  +      NP  + + +++
Sbjct: 461 VEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLL 520

Query: 182 CGLLKRERFEDALKLFQ---EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                    E A+K      ++   N   +  +   Y+  GR EE   +   M   G+
Sbjct: 521 GACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGV 578


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 156/484 (32%), Positives = 276/484 (57%), Gaps = 49/484 (10%)

Query: 53  SESDKFSSVHQVF-----DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           S+S  F +  ++F     + +P L++V+ T +I  ++++    EA+ +F +M+     P+
Sbjct: 197 SQSGNFKAAFELFKNMRKENIP-LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPN 255

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKV----------GLQSNVFVGSAILDLYIKLS 157
             T  SV+ +  +L   + G ++HA++ K           G   ++ V +A++D+Y K  
Sbjct: 256 CVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 315

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
           S + A  +F+D                               +  RNVV+W  MIGG++Q
Sbjct: 316 SFKAARSIFDDI-----------------------------PLEERNVVTWTVMIGGHAQ 346

Query: 218 TGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKL 273
            G + +A+ LF+EM+ E  G+ PN  T+ C ++A A++AA+ +GK  HA  ++       
Sbjct: 347 YGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSS 406

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
             FV N LI+ Y+KCG ++ +  VFD +++++ ++W +++ GY  +GRG EA++ F++MR
Sbjct: 407 AYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 466

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
             G  P+ +T L +L+AC+H G+V++G SYF     +     + EHYA  +DLL+R GR 
Sbjct: 467 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRL 526

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
            +A + + D+P +P    W ALL  C++HSNVEL E A  +++ ++ E+  SY ++SN  
Sbjct: 527 DKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 586

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           + AG+W +V+ IR  MK+ G+ + PGCSW++ +     F  GDR+H ++ +IYA+L S  
Sbjct: 587 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 646

Query: 514 EQIR 517
           ++I+
Sbjct: 647 DRIK 650



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 212/431 (49%), Gaps = 39/431 (9%)

Query: 51  CGSESDKFSSVHQVFDEVPDL---NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL----- 102
           CGS          +FDE+      +V+S  +I+    K  +   A+ LFS+M L+     
Sbjct: 58  CGS----LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKP 113

Query: 103 -NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
            N R    +  +++P+  +L+ +   K++H  A + G   +VFVG+A++D Y K   +E 
Sbjct: 114 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 173

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQ 217
           A +VF      +VVS+  M+ G  +   F+ A +LF+ M   N+    V+W A+I GYSQ
Sbjct: 174 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQ 233

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK--------- 268
            G + EA+N+F +M+  G +PN  T+   + A A++ A   G   HA ++K         
Sbjct: 234 RGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDND 293

Query: 269 FLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEA 325
           F G+  D+ V N+LI  Y+KC S + +  +FD   L ERN+VTW  +I G+AQ G   +A
Sbjct: 294 FGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 353

Query: 326 IEFFERM--RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHY 380
           ++ F  M     G+ PN  T+  +L AC H   +  G   ++Y  +    D       + 
Sbjct: 354 LKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVAN- 412

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILAL 438
            C++++ S+ G    A+     +     I  W +++ G  +H   +  L  F   R    
Sbjct: 413 -CLINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDKMRKAGF 470

Query: 439 DPEDVSSYVML 449
            P+D++  V+L
Sbjct: 471 VPDDITFLVVL 481



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 163/378 (43%), Gaps = 93/378 (24%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           ML    R   FT   V+ +   L     G   H      G +SNVF+ +A++ +Y +  S
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           +EEA+ +F++     +                             +V+SWN+++  + ++
Sbjct: 61  LEEASMIFDEITQRGI----------------------------DDVISWNSIVSAHVKS 92

Query: 219 GRNEEAVNLFIEML----------REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
                A++LF +M           R  ++   + LP    A  ++ A+   K  H  A++
Sbjct: 93  SNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP----ACGSLKAVPQTKEVHGNAIR 148

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
               LDVFVGN+LI  YAKCG ME+++ VF+ +  +++V+WNA++ GY+Q+G  + A E 
Sbjct: 149 NGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFEL 208

Query: 329 FERMR-----------------------------------INGIRPNGVTLLGLLWACNH 353
           F+ MR                                    +G  PN VT++ +L AC  
Sbjct: 209 FKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACAS 268

Query: 354 TGLVEKG---YSYFSQAKL---------EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
            G   +G   ++Y  +  L         ED  ++    Y  ++D+ S+   FK A+    
Sbjct: 269 LGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMV---YNALIDMYSKCRSFKAARSIFD 325

Query: 402 DLPFDP-GIGFWKALLGG 418
           D+P +   +  W  ++GG
Sbjct: 326 DIPLEERNVVTWTVMIGG 343


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/410 (36%), Positives = 243/410 (59%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M L ++ P  FT   V+ +   L D+  GK +H    K+G  SN+F+ + IL+LY     
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           + +A  +FE     + V++  +I  L KR   + A   F  MP++NV SW +MI G+ Q 
Sbjct: 61  MGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQC 120

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G+  EA++LF+++  E + PN  T+   + A A++  L +G+  H  + K   K +V V 
Sbjct: 121 GKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVC 180

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N+LI  Y KCG +E++  VF ++ ER +V+W+A+I G A +G+ EEA+  F  M   G++
Sbjct: 181 NTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVK 240

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           PNGVT +GLL AC+H GL+++G  +F+    +   + + EHY C+VDL SR+G  +EA E
Sbjct: 241 PNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHE 300

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
           F+  +P  P    W ALLGGC++H N++L E A + +  LDP +   YV++SN  + A +
Sbjct: 301 FILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAER 360

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAV 508
           W++ + +R+ MK++G+ +  G S I +   VH FV GD+ H   ++I  +
Sbjct: 361 WEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKI 410



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 100/188 (53%), Gaps = 5/188 (2%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  +P+ NV S T++I  F +     EAI LF ++    +RP+E T  SV+ +   L DL
Sbjct: 99  FLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDL 158

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           +LG+ +H ++TK G + NV V + ++D+Y+K   +E A RVF +     VVS++ MI GL
Sbjct: 159 DLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGL 218

Query: 185 LKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPN 239
               + E+AL LF EM    V    V++  ++   S  G  +E    F  M  + G++P 
Sbjct: 219 AMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQ 278

Query: 240 HSTLPCAI 247
                C +
Sbjct: 279 IEHYGCVV 286



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 9/184 (4%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG       +  +VF E+ +  VVS + +I   A     EEA+ LFS M+ L ++P+ 
Sbjct: 188 VKCGC----LENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNG 243

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWAT-KVGLQSNVFVGSAILDLYIKLSSIEEATR-VF 166
            TF  ++ + + +  ++ G++  A  T   G+   +     ++DL+ +   +EEA   + 
Sbjct: 244 VTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFIL 303

Query: 167 EDTHNPNVVSYTTMICGLLKRERF---EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                PN V +  ++ G    +     E+A+K   E+   N   +  +   Y++  R E+
Sbjct: 304 SMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWED 363

Query: 224 AVNL 227
           A  +
Sbjct: 364 AARV 367


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 263/451 (58%), Gaps = 7/451 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN---IRPSEFTFGSVIPSSTA 120
           +F ++   N+ +   II  +A   H+  AI +F +ML  +   + P +FTF  VI S T 
Sbjct: 64  LFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTG 123

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           +    LG Q+H    K G   +    +A++D+Y K   +  A +VFE+  + +V+S+ ++
Sbjct: 124 ILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSL 183

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G +K  +   A +LF +MP R +VSW  MI GY + G   +A+++F EM   G+ P+ 
Sbjct: 184 IFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDE 243

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
            ++   + A A + AL +GK  H  A K  FL K  +   N+LI  YAKCG ++++  +F
Sbjct: 244 ISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGI--CNALIEMYAKCGCIDEAWNLF 301

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D+L E+++++W+ +I G A +G+G EAI+ FE M    + PN +T LG+L AC+HTGL +
Sbjct: 302 DQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWD 361

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +G  YF           + EHY C++DLL RSG   +A + +  +P  P    W +LL  
Sbjct: 362 EGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSS 421

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+IH N+++   A ++++ L+PE+  +YV+L+N  +  GKW++VSNIR+ ++ K + + P
Sbjct: 422 CRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTP 481

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           G S IE+ + V  FV+ D +   + E++ +L
Sbjct: 482 GSSSIEVNNVVQEFVSSDDSKPFSQEVFWIL 512



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 160/373 (42%), Gaps = 78/373 (20%)

Query: 128 KQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           K++HA   K+ L QSN  V                 T++ +   N   VSY T+      
Sbjct: 27  KKIHAHVVKLSLSQSNFLV-----------------TKMLDSCDNLGHVSYATL------ 63

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE---GLVPNHSTL 243
                    LF+++ H N+ ++NA+I  Y+    +  A+++F++ML      + P+  T 
Sbjct: 64  ---------LFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTF 114

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
           P  I +   I    +G   H    KF         N+LI  Y K G + ++  VF++++ 
Sbjct: 115 PFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSH 174

Query: 304 RNIVTWNAVICGYAQNGRGE-------------------------------EAIEFFERM 332
           R++++WN++I GY + G+                                 +A++ F  M
Sbjct: 175 RDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREM 234

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSG 391
           ++ GI P+ ++++ +L AC   G +E G      A  +  G L+       ++++ ++ G
Sbjct: 235 QMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYA--DKNGFLRKTGICNALIEMYAKCG 292

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN----VELGEFAARRILALDPEDVSSYV 447
              EA   L+D   +  +  W  ++GG   H      ++L E   +  +A  P ++ +++
Sbjct: 293 CIDEAWN-LFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVA--PNEI-TFL 348

Query: 448 MLSNALSVAGKWD 460
            +  A S  G WD
Sbjct: 349 GVLLACSHTGLWD 361



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 98/176 (55%), Gaps = 4/176 (2%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + +S  ++FD++P   +VS TT+I  + +   Y +A+ +F  M ++ I P E +  +V+P
Sbjct: 192 QMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLP 251

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L +GK +H +A K G      + +A++++Y K   I+EA  +F+     +V+S
Sbjct: 252 ACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVIS 311

Query: 177 YTTMICGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAVNLF 228
           ++TMI GL    +  +A++LF+EM       N +++  ++   S TG  +E +  F
Sbjct: 312 WSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYF 367



 Score = 43.5 bits (101), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 109/280 (38%), Gaps = 49/280 (17%)

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           I +  N   +   K  HA  VK       F+   ++      G +  + L+F +L   NI
Sbjct: 14  ITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNI 73

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERM---RINGIRPNGVTL-------LGLLWACNHTGL 356
            T+NA+I  YA N     AI  F +M     N + P+  T         G+L  C+  G+
Sbjct: 74  FTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGIL--CHRLGM 131

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYAC-----MVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
              G  Y   A            + C     ++D+ ++ G    A +   ++     I  
Sbjct: 132 QVHGLVYKFGAD-----------FHCITENALIDMYTKFGDLTNACKVFEEMSHRDVIS- 179

Query: 412 WKALLGGCQIHSNVELGEFAARRILALD--PEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
           W +L+ G      V+LG+  + R L  D     + S+  +       G + +  ++ REM
Sbjct: 180 WNSLIFG-----YVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREM 234

Query: 470 KEKG--------MTRVPGCSW---IEIKSKVHVFVTGDRN 498
           +  G        +  +P C+    +E+   +H++   D+N
Sbjct: 235 QMVGIEPDEISIIAVLPACAQLGALEVGKWIHMY--ADKN 272


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 252/446 (56%), Gaps = 32/446 (7%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS  ++I  + +     +A+ LF  M+   +    FT  SV+ + T LEDL+ G Q H  
Sbjct: 206 VSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQ 265

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             K G   N  VGS ++DLY K                          CG        D 
Sbjct: 266 LIKTGFHQNSHVGSGLIDLYSK--------------------------CG----GGMSDC 295

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRN-EEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
            K+F+E+   ++V WN M+ GYSQ     E+A+  F +M   G  PN  +  C I A +N
Sbjct: 296 RKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSN 355

Query: 253 IAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +++   GK  H+ A+K  +    + V N+LI+ Y+KCG+++D+  +FD++ E N V+ N+
Sbjct: 356 LSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNS 415

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I GYAQ+G   E++  F+ M    I P  +T + +L AC HTG VE+G++YF+  K + 
Sbjct: 416 MIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKF 475

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
               + EHY+CM+DLL R+G+  EA+  +  +PF+PG   W +LLG C+ H N+EL   A
Sbjct: 476 NIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKA 535

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A ++L L+P + + YV+LSN  + AG+W+ V+ +R+ M+++G+ + PGCSWIE+K ++HV
Sbjct: 536 ANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHV 595

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIR 517
           FV  D +H M  EIY  L   + +++
Sbjct: 596 FVAEDSSHPMIKEIYEFLEEMSGKMK 621



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 193/419 (46%), Gaps = 44/419 (10%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
            HQ+FD++P+ ++VS  T+I  +A       A+ LFS M  + +    FT  +VI  +  
Sbjct: 93  AHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVI--TAC 150

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNVVSYTT 179
            +D+ L  QLH+ A   G  S V V +A+L  Y K   +++A RVF       + VS+ +
Sbjct: 151 CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNS 210

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           MI    + +    AL LFQ                               EM+R GL  +
Sbjct: 211 MIVAYGQHQEGSKALGLFQ-------------------------------EMVRRGLNVD 239

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC-GSMEDSLLVF 298
             TL   + A   +  L  G  FH   +K     +  VG+ LI  Y+KC G M D   VF
Sbjct: 240 MFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVF 299

Query: 299 DKLTERNIVTWNAVICGYAQNGRG-EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           +++TE ++V WN ++ GY+QN    E+A+E F +M+  G RPN  + + ++ AC++    
Sbjct: 300 EEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSP 359

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            +G    S A   D    +      ++ + S+ G  ++A+  L+D   +       +++ 
Sbjct: 360 SQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARR-LFDRMAEHNTVSLNSMIA 418

Query: 418 GCQIHS----NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           G   H     ++ L ++   R +A  P  + +++ + +A +  G+ +   N    MKEK
Sbjct: 419 GYAQHGIEMESLHLFQWMLERQIA--PTSI-TFISVLSACAHTGRVEEGWNYFNMMKEK 474



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 146/310 (47%), Gaps = 6/310 (1%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  ++ +  A  DL+ GK LH+   K  +  + +  +  + LY K   +  A + F+D  
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +PNV S+  +I    K  R   A +LF ++P  ++VS+N +I  Y+  G    A+ LF  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   GL  +  TL   I A  +   +G+    H+ AV       V V N+L+++Y K G 
Sbjct: 131 MREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGD 188

Query: 291 MEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           ++D+  VF  +   R+ V+WN++I  Y Q+  G +A+  F+ M   G+  +  TL  +L 
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLT 248

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPG 408
           A      +  G  +  Q  L   G  +  H    ++DL S+ G        +++   +P 
Sbjct: 249 AFTCLEDLSGGLQFHGQ--LIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 409 IGFWKALLGG 418
           +  W  ++ G
Sbjct: 307 LVLWNTMVSG 316



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 13/238 (5%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           ++  C +  S ++  ++HSLA    I + + SV      A+      CG+  D      +
Sbjct: 349 VISACSNLSSPSQGKQIHSLALKSDIPSNRISVDN----ALIAMYSKCGNLQD----ARR 400

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD + + N VS  ++I  +A+     E+++LF  ML   I P+  TF SV+ +      
Sbjct: 401 LFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGR 460

Query: 124 LNLG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSYTTMI 181
           +  G    +    K  ++      S ++DL  +   + EA  +      NP  + + +++
Sbjct: 461 VEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLL 520

Query: 182 CGLLKRERFEDALKLFQ---EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                    E A+K      ++   N   +  +   Y+  GR EE   +   M   G+
Sbjct: 521 GACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGV 578


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 171/524 (32%), Positives = 275/524 (52%), Gaps = 64/524 (12%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +S  +VFD + +  VV  T +I R+ +    EEA+ LF   L     P  +T  S+I +
Sbjct: 204 LASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISA 263

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS---SIEEATRVFEDTHNPNV 174
            T L  + LG QLH+ A ++GL S+  V   ++D+Y K +   +++ A +VFE     +V
Sbjct: 264 CTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDV 323

Query: 175 VSYTTMICGLLKRERFED-ALKLFQEM------------------------------PHR 203
           +S+T +I G ++    E+  + LF EM                               H 
Sbjct: 324 ISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHA 383

Query: 204 NVVS---------WNAMIGGYSQTGRNEEAVNLFIEMLREGLVP---------------- 238
           +V+           NA++  Y+++G  EEA  +F ++    ++P                
Sbjct: 384 HVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLDHRIVR 443

Query: 239 -----NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
                + ST    I AAA++  L  G+  HA ++K     D FV NSL+S Y++CG +ED
Sbjct: 444 MDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLED 503

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +   F++L +RN+++W ++I G A++G  E A+  F  M + G++PN VT + +L AC+H
Sbjct: 504 ACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSH 563

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            GLV +G  YF   + +   + + EHYACMVDLL+RSG  KEA EF+ ++P       WK
Sbjct: 564 VGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWK 623

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            LLG C+ H N+E+GE  A+ ++ L+P D + YV+LSN  + AG WD V+ IR  M++  
Sbjct: 624 TLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNN 683

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + +  G SW+E+++  H F  GD +H    +IY  L +   QI+
Sbjct: 684 LNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIK 727



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 140/308 (45%), Gaps = 42/308 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           CG+     +S   VFD +  L ++VS T +    A+      ++ L   ML   + P+ +
Sbjct: 97  CGA----VASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAY 152

Query: 110 TFGSVIPSSTALE-DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFE 167
           T  +   +    E    +G  +     K+GL  ++V VGSA++D+  +   +  A +VF+
Sbjct: 153 TLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFD 212

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                          GL+++                 VV W  +I  Y Q    EEAV L
Sbjct: 213 ---------------GLIEK----------------TVVVWTLLISRYVQGECAEEAVEL 241

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F++ L +G  P+  T+   I A   + ++ +G   H+ A++     D  V   L+  YAK
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAK 301

Query: 288 CG---SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE-EAIEFFERMRINGIRPNGVT 343
                +M+ +  VF+++ + ++++W A+I GY Q+G  E + +  F  M    I+PN +T
Sbjct: 302 SNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHIT 361

Query: 344 LLGLLWAC 351
              +L +C
Sbjct: 362 YSSILKSC 369



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 31/228 (13%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTI----IGRFAKQHHYEEAIYLFS-------- 97
           SC S SD  S   QV   V   N  SA T+    +  +A+    EEA  +F+        
Sbjct: 368 SCASISDHDSG-RQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI 426

Query: 98  -------------RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF 144
                        R++ +++  S  TF S+I ++ ++  L  G+QLHA + K G  S+ F
Sbjct: 427 PCITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRF 486

Query: 145 VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM---- 200
           V ++++ +Y +   +E+A R F +  + NV+S+T+MI GL K    E AL LF +M    
Sbjct: 487 VSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTG 546

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
              N V++ A++   S  G   E    F  M R+ GL+P      C +
Sbjct: 547 VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMV 594



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 125/303 (41%), Gaps = 40/303 (13%)

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           DL LG+ LH    +  L   +  V +++L LY +  ++  A  VF+              
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMR----------- 111

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            GL                  R++VSW AM    ++ G    ++ L  EML  GL+PN  
Sbjct: 112 -GL------------------RDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAY 152

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLG--KLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           TL  A  A        +        V  +G    DV VG++LI   A+ G +  +  VFD
Sbjct: 153 TLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFD 212

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            L E+ +V W  +I  Y Q    EEA+E F     +G  P+  T+  ++ AC   G V  
Sbjct: 213 GLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRL 272

Query: 360 GYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSG---RFKEAKEFLYDLPFDPGIGFWKAL 415
           G    S A     G+      +C +VD+ ++S        A +    +P +  I  W AL
Sbjct: 273 GLQLHSLAL--RMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVIS-WTAL 329

Query: 416 LGG 418
           + G
Sbjct: 330 ISG 332


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/466 (35%), Positives = 273/466 (58%), Gaps = 12/466 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYE-------EAIYLFSRMLLLN-IRPSEFTFGSV 114
           + F ++   N  S  TII   A     +       EA+  FS ML    + P++FTF  V
Sbjct: 70  KFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCV 129

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPN 173
           + +   L  +  GKQLH +  K+GL S+ FV S ++ +Y+   ++++A  +F  T    N
Sbjct: 130 LKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGN 189

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VV +  MI G ++      + +LF  MP+++VVSWN MI G +Q G  +EA+ +F +M  
Sbjct: 190 VVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQL 249

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             + PN+ TL   + A + + A+ +GK  H  A K   ++D  +G++LI  Y+KCGS++ 
Sbjct: 250 GDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDK 309

Query: 294 SLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++ VF+ +  ++N +TW+A+I G A +GR  +A++ F RM+  G+ P+ V  +G+L AC+
Sbjct: 310 AVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACS 369

Query: 353 HTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           H GLVE+G S +    +   G+L + EHY CMVDLL R+G  +EA++ + ++P  P    
Sbjct: 370 HAGLVEEGRSIYYHM-VNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVI 428

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
            KALLG C++H N+E+GE  A+ ++   P D  SYV LSN  +  G W+ V  +R +MKE
Sbjct: 429 LKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKE 488

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
             + + PGCSWIE+   +H F+  D +H   + I+++L   ++++R
Sbjct: 489 LDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLR 534



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 150/333 (45%), Gaps = 50/333 (15%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE------- 222
           H+P   +       L  +   + A K F ++ H N  SWN +I   + +  ++       
Sbjct: 45  HHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSL 104

Query: 223 EAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           EA+  F  ML +GLV PN  T PC + A A +A +  GK  H   VK     D FV ++L
Sbjct: 105 EALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNL 164

Query: 282 ISFYAKCGSMEDSLL--------------------------------VFDKLTERNIVTW 309
           +  Y  CG+M+D+ +                                +FD +  +++V+W
Sbjct: 165 VRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSW 224

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQ 366
           N +I G AQNG  +EAIE F  M++  + PN VTL+ +L A +  G +E G   + +  +
Sbjct: 225 NVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEK 284

Query: 367 AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            ++E   +L     + ++D+ S+ G   +A +    +        W A++GG  +H    
Sbjct: 285 NEIEIDDVLG----SALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRAR 340

Query: 427 --LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
             L  F   +   + P DV  Y+ + +A S AG
Sbjct: 341 DALDHFWRMQQAGVTPSDV-VYIGVLSACSHAG 372


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/519 (31%), Positives = 275/519 (52%), Gaps = 46/519 (8%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C  ++ L + ++ K+H L   + +E             I +  V+C  +          F
Sbjct: 144 CAIKACLDVLEIKKIHGLLFKFGLELDVF---------IGSALVNCYLKFGLMEHAQVAF 194

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           +E+P  +VV    ++  +A+   +E  +  F RM   ++ PS FT   V+     + DLN
Sbjct: 195 EELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLN 254

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
            G+ +H +A K+G  S V V ++++D+Y K   IE                         
Sbjct: 255 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIE------------------------- 289

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                 DAL++F+ M  +++ SWN+++  + Q G ++  + L   ML  G+ P+  T+  
Sbjct: 290 ------DALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343

Query: 246 AIIAAANIAALGMGKSFHA-CAVKFLGKL-----DVFVGNSLISFYAKCGSMEDSLLVFD 299
            + A +++AAL  G+  H    V  LGK      DV + N++I  YAKCGSM D+ LVF+
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE 403

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           +++ +++ +WN +I GY  +G G EA+E F RM    ++P+ VT +G+L AC+H G V +
Sbjct: 404 RMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQ 463

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G ++  Q K +       EHY C++D+L R+G+  EA E    +P +     W+ALL  C
Sbjct: 464 GRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAAC 523

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H +  L E AA+R+  L+PE   SYV++SN     G+++ V  +R  M+++ + + PG
Sbjct: 524 RLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPG 583

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           CSWIE+K+ VHVFV+ DR H     IYA L S T ++RE
Sbjct: 584 CSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLRE 622



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 208/446 (46%), Gaps = 52/446 (11%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVF-DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97
           L +P   T  ++  S+ ++ +    +F D   ++NV +   II  F      EE    + 
Sbjct: 69  LNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQ 128

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
           +M    + P +FTF   I +   + ++   K++H    K GL+ +VF+GSA+++ Y+K  
Sbjct: 129 KMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFG 185

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
            +E A   FE                               E+P R+VV WNAM+ GY+Q
Sbjct: 186 LMEHAQVAFE-------------------------------ELPIRDVVLWNAMVNGYAQ 214

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
            G+ E  +  F  M  E +VP+  T+   +   A +  L  G+  H  A+K      V V
Sbjct: 215 IGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAV 274

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            NSLI  Y KC  +ED+L +F+ + E++I +WN+++  + Q G  +  +   +RM   GI
Sbjct: 275 SNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGI 334

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPG------MLKPEHYACMVDLLS 388
           +P+ VT+  +L AC+H   +  G   + Y   + L   G      +LK      ++D+ +
Sbjct: 335 QPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLK----NAVIDMYA 390

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSY 446
           + G  ++A   +++   +  +  W  ++ G  +H   N  L  F+    + L P++V ++
Sbjct: 391 KCGSMRDA-HLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEV-TF 448

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEK 472
           V + +A S AG      N   +MK K
Sbjct: 449 VGVLSACSHAGFVSQGRNFLVQMKSK 474



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 35/235 (14%)

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED-THNPN 173
           + +S   ++L+ GK++H++    G  ++    ++++++Y K + +  A  +F D TH  N
Sbjct: 44  LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEIN 103

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V ++  +I G +     E+  + +Q+M  RN                             
Sbjct: 104 VFAFNAIISGFITNGFPEEGFEFYQKM--RN----------------------------- 132

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG++P+  T PCAI A  ++  +   K  H    KF  +LDVF+G++L++ Y K G ME 
Sbjct: 133 EGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEH 189

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           + + F++L  R++V WNA++ GYAQ G+ E  +E F RM    + P+  T+ G+L
Sbjct: 190 AQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 271/491 (55%), Gaps = 7/491 (1%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           SL   ++L SL     +  Q         P + +  V   ++S  F     VF+ + D N
Sbjct: 296 SLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRN 355

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
            V+ T +I  F +   + E++ LF++M    +   +F   ++I    +  DL LG+QLH+
Sbjct: 356 NVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHS 415

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
              K G    V V ++++ +Y K  +++ A  +F   +  ++VS+T+MI    +      
Sbjct: 416 LCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAK 475

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAA 251
           A + F  M  +NV++WNAM+G Y Q G  E+ + ++  ML E  V P+  T        A
Sbjct: 476 AREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCA 535

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           ++ A  +G       VK    +D  V N++I+ Y+KCG + ++  VFD L  ++IV+WNA
Sbjct: 536 DLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNA 595

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE- 370
           +I GY+Q+G G++AIE F+ +   G +P+ ++ + +L  C+H+GLV++G  YF   K   
Sbjct: 596 MITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAH 655

Query: 371 --DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
              PG+   EH++CMVDLL R+G   EAK+ + D+P  P    W ALL  C+IH N EL 
Sbjct: 656 NISPGL---EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELA 712

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
           E AA+ +  LD  D  SY++++   + AGK D+ + IR+ M++KG+ + PG SW+E+ +K
Sbjct: 713 ELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNK 772

Query: 489 VHVFVTGDRNH 499
           VHVF   D +H
Sbjct: 773 VHVFKADDVSH 783



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 158/296 (53%), Gaps = 1/296 (0%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVI 115
           + S   ++F  +P  +V S  T++  + +   Y  ++  F  M    +  P+ FT    +
Sbjct: 106 RLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAM 165

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            S  AL   +L  QL A   K   Q +  V +A++D++++  +++ A+R+F     P + 
Sbjct: 166 KSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMF 225

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
              +M+ G +K    + AL+LF  MP R+VVSWN M+   SQ+GR  EA+++ ++M  +G
Sbjct: 226 CRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG 285

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           +  + +T   ++ A A +++L  GK  HA  ++ L  +D +V ++L+  YAK G  +++ 
Sbjct: 286 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAK 345

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            VF+ L +RN V W  +I G+ Q G   E++E F +MR   +  +   L  L+  C
Sbjct: 346 GVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 401



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 35/321 (10%)

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR-VFEDTHNPNVVSYTTMICGLLKRER 189
           H     VGL S VF+ + +L  Y+   ++ +A R +  D  +PNV+++  M+ G  K  R
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAII 248
             DA++LF  MP R+V SWN ++ GY Q+ +   ++  F+ M R G   PN  TL CA+ 
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS------------------ 290
           +   +    +     A   KF  + D  V  +L+  + +CG+                  
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 226

Query: 291 -------------MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
                        ++ +L +FD + ER++V+WN ++   +Q+GR  EA++    M+  G+
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 286

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           R +  T    L AC     +  G    +Q     P  + P   + +V+L ++SG FKEAK
Sbjct: 287 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP-HIDPYVASALVELYAKSGCFKEAK 345

Query: 398 EFLYDLPFDPGIGFWKALLGG 418
                L     +  W  L+ G
Sbjct: 346 GVFNSLHDRNNVA-WTVLISG 365



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +V   N +++ YAK G + D++ +F ++  R++ +WN ++ GY Q+ +   ++E F  M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 334 INGIR-PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
            +G   PN  TL   + +C   G         +  +  D      E  A +VD+  R G 
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDS-QDDSEVAAALVDMFVRCGA 208

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
              A      +  +P +    ++L G      V+    A     ++   DV S+ M+ +A
Sbjct: 209 VDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVD---HALELFDSMPERDVVSWNMMVSA 264

Query: 453 LSVAGKWDNVSNIRREMKEKGM 474
           LS +G+     ++  +M+ KG+
Sbjct: 265 LSQSGRVREALDMVVDMQSKGV 286


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 257/446 (57%), Gaps = 14/446 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS---------EFTFGS 113
           +VF  VP  N+     +I  +A+ H + +A+ ++ RML     PS          FT+  
Sbjct: 63  RVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPF 122

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++ +   L    LG+Q+HA   + G +S+  V ++++++Y +   +  A +VF+     +
Sbjct: 123 LLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKD 182

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
            VS+ T+I    +  +   A +LF  MP + VVSW A++ GY+  G    AV +F +M  
Sbjct: 183 AVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQM 242

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSM 291
           EG  P+  ++   + A A + AL +G+  +A   K   LGK  +++ N+L+  YAKCG +
Sbjct: 243 EGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGK--IYICNALMEMYAKCGCI 300

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWA 350
           E++L +F  ++E+++++W+  I G A +GR  EA++ FE M   G + PNG+T +GLL A
Sbjct: 301 EEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSA 360

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H GL+++G  YF + K E       EHY C+VDLL RSGR + A + +  +P  P   
Sbjct: 361 CSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGK 420

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W +LL  C+ HS+V+    AA R++ L+PEDV + VML+N  + AG+W NV++ R+E++
Sbjct: 421 IWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVMLANVYAAAGRWGNVASTRKEIR 480

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGD 496
            +   + PGCS IE+ + V  FV G+
Sbjct: 481 SRSTRKTPGCSMIEVDNVVREFVAGE 506



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 149/335 (44%), Gaps = 62/335 (18%)

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS------- 241
           R   A ++F  +P  N+   NAMI  Y+Q   + +AV +++ MLR    P+ S       
Sbjct: 57  RAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGD 116

Query: 242 --TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T P  + A   +AA  +G+  HA   +   +    V NSLI  Y +CG +  +  VFD
Sbjct: 117 RFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFD 176

Query: 300 KLTERNIVTWN-------------------------------AVICGYAQNGRGEEAIEF 328
            + E++ V+WN                               A++ GY   G    A+E 
Sbjct: 177 GMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEV 236

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYAC--M 383
           F +M++ G  P+ V+++ +L AC   G +E G   Y+Y ++      GML  + Y C  +
Sbjct: 237 FRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNK-----HGMLG-KIYICNAL 290

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN----VELGEFAAR--RILA 437
           +++ ++ G  +EA +  + +  +  +  W   +GG   H      V+L E   R  R++ 
Sbjct: 291 MEMYAKCGCIEEALQLFHGMS-EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVM- 348

Query: 438 LDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
             P  + ++V L +A S AG  D        MKE+
Sbjct: 349 --PNGI-TFVGLLSACSHAGLLDEGLRYFDRMKEE 380



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  +   +     ++F  +PD  VVS T ++  +     +  A+ +F +M +    P +
Sbjct: 190 ISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDD 249

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            +  +V+P+   L  L LG+ ++A+  K G+   +++ +A++++Y K   IEEA ++F  
Sbjct: 250 VSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHG 309

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-----NVVSWNAMIGGYSQTGRNEE 223
               +V+S++T I GL    R  +A+KLF+ M        N +++  ++   S  G  +E
Sbjct: 310 MSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDE 369

Query: 224 AVNLFIEMLRE-GLVPNHSTLPCAI 247
            +  F  M  E G+ P+     C +
Sbjct: 370 GLRYFDRMKEEYGVEPSVEHYGCVV 394


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 271/491 (55%), Gaps = 7/491 (1%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           SL   ++L SL     +  Q         P + +  V   ++S  F     VF+ + D N
Sbjct: 276 SLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRN 335

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
            V+ T +I  F +   + E++ LF++M    +   +F   ++I    +  DL LG+QLH+
Sbjct: 336 NVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHS 395

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
              K G    V V ++++ +Y K  +++ A  +F   +  ++VS+T+MI    +      
Sbjct: 396 LCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAK 455

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAA 251
           A + F  M  +NV++WNAM+G Y Q G  E+ + ++  ML E  V P+  T        A
Sbjct: 456 AREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCA 515

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           ++ A  +G       VK    +D  V N++I+ Y+KCG + ++  VFD L  ++IV+WNA
Sbjct: 516 DLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNA 575

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE- 370
           +I GY+Q+G G++AIE F+ +   G +P+ ++ + +L  C+H+GLV++G  YF   K   
Sbjct: 576 MITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAH 635

Query: 371 --DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
              PG+   EH++CMVDLL R+G   EAK+ + D+P  P    W ALL  C+IH N EL 
Sbjct: 636 NISPGL---EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELA 692

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
           E AA+ +  LD  D  SY++++   + AGK D+ + IR+ M++KG+ + PG SW+E+ +K
Sbjct: 693 ELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNK 752

Query: 489 VHVFVTGDRNH 499
           VHVF   D +H
Sbjct: 753 VHVFKADDVSH 763



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 158/296 (53%), Gaps = 1/296 (0%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVI 115
           + S   ++F  +P  +V S  T++  + +   Y  ++  F  M    +  P+ FT    +
Sbjct: 86  RLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAM 145

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            S  AL   +L  QL A   K   Q +  V +A++D++++  +++ A+R+F     P + 
Sbjct: 146 KSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMF 205

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
              +M+ G +K    + AL+LF  MP R+VVSWN M+   SQ+GR  EA+++ ++M  +G
Sbjct: 206 CRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG 265

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           +  + +T   ++ A A +++L  GK  HA  ++ L  +D +V ++L+  YAK G  +++ 
Sbjct: 266 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAK 325

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            VF+ L +RN V W  +I G+ Q G   E++E F +MR   +  +   L  L+  C
Sbjct: 326 GVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 381



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 35/321 (10%)

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR-VFEDTHNPNVVSYTTMICGLLKRER 189
           H     VGL S VF+ + +L  Y+   ++ +A R +  D  +PNV+++  M+ G  K  R
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAII 248
             DA++LF  MP R+V SWN ++ GY Q+ +   ++  F+ M R G   PN  TL CA+ 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS------------------ 290
           +   +    +     A   KF  + D  V  +L+  + +CG+                  
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 291 -------------MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
                        ++ +L +FD + ER++V+WN ++   +Q+GR  EA++    M+  G+
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           R +  T    L AC     +  G    +Q     P  + P   + +V+L ++SG FKEAK
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP-HIDPYVASALVELYAKSGCFKEAK 325

Query: 398 EFLYDLPFDPGIGFWKALLGG 418
                L     +  W  L+ G
Sbjct: 326 GVFNSLHDRNNVA-WTVLISG 345



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 6/202 (2%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +V   N +++ YAK G + D++ +F ++  R++ +WN ++ GY Q+ +   ++E F  M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 334 INGIR-PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
            +G   PN  TL   + +C   G         +  +  D      E  A +VD+  R G 
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDS-QDDSEVAAALVDMFVRCGA 188

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
              A      +  +P +    ++L G      V+    A     ++   DV S+ M+ +A
Sbjct: 189 VDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVD---HALELFDSMPERDVVSWNMMVSA 244

Query: 453 LSVAGKWDNVSNIRREMKEKGM 474
           LS +G+     ++  +M+ KG+
Sbjct: 245 LSQSGRVREALDMVVDMQSKGV 266


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 258/462 (55%), Gaps = 17/462 (3%)

Query: 63  QVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRML------LLNIRPSEFTFGSV 114
           ++ D +P    NVVS  T+I   A+     EA+ +F+++          +    FT  S 
Sbjct: 117 RLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSA 176

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
             +   L D    ++LH      G++  V + +A++D Y K   +E+A  VF+     + 
Sbjct: 177 ASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDS 236

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           VS+T+MI G  +    +DA+++F  MP ++ ++W A+I G+ Q G  E A+ LF  M  E
Sbjct: 237 VSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGE 296

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK-FLGK--LDVFVGNSLISFYAKCGSM 291
           G+VP    L   + A A +  +  GK  H   ++  +G    +VF+ N+LI  Y+KCG M
Sbjct: 297 GVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDM 356

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             ++ VFD++ ER+I++WN+++ G++ NG+G++++  FERM  + ++P  VT L +L AC
Sbjct: 357 VAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTAC 416

Query: 352 NHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           +H GLV  G        ++D G+  + EHYA  +D L R+ + +EA EF+  L    G+G
Sbjct: 417 SHAGLVSDGRRILE--SMQDHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLG 474

Query: 411 F---WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W ALLG C +H N+E+ E  A  +  L+PE+   YVMLSN  S AG+WD+   +R 
Sbjct: 475 TTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRA 534

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            MK KG+ +    SWIE++   H+FV  D +HH  +EIY +L
Sbjct: 535 LMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHHEANEIYEML 576



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 127/275 (46%), Gaps = 40/275 (14%)

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           LG  +HA   K  L  +  + + ++ LY  L +   +   F+D  + N  SY +++  L 
Sbjct: 47  LGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALA 106

Query: 186 K-RERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHS 241
           + R    DAL+L   MP   RNVVS+N +I   ++ GR  EA+ +F ++ R+ GL     
Sbjct: 107 RGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQV 166

Query: 242 TLPCAIIAAANIAALGMG-----KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            +    + +A  A  G+      +  H   V    ++ V + N+++  Y+K G +ED+  
Sbjct: 167 AIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARG 226

Query: 297 VFDKLTERNIVTWNAVICGYA-------------------------------QNGRGEEA 325
           VFD++T R+ V+W ++I GY                                QNG  E A
Sbjct: 227 VFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIA 286

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +E FERM   G+ P    L+  L AC   GLV +G
Sbjct: 287 LELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 253/465 (54%), Gaps = 31/465 (6%)

Query: 52  GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           G ES  + S+ +VFDE+ + + VS  T+I   A+   ++EA+ +   M      P  FT 
Sbjct: 431 GLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTL 490

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            +V+P      D+  G  +H +A K G  ++VFVGS+++D+Y   + ++ + +VF+    
Sbjct: 491 STVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDS--- 547

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                             F D           + V WN+M+ GY+Q G  EEA+ +F  M
Sbjct: 548 ------------------FSDC----------DAVLWNSMLAGYAQNGSVEEALGIFRRM 579

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           L+ G+ P   T    I A  N++ L +GK  HA  ++     ++F+ +SLI  Y KCG++
Sbjct: 580 LQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNV 639

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           + +  VF+ +   +IV+W A+I GYA +G   EA   FERM +  ++PN +T L +L AC
Sbjct: 640 DIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTAC 699

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GLV+ G+ YF+    +   +   EH A + D L R+G   EA  F+ ++   P    
Sbjct: 700 SHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSV 759

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W  LL  C++H N  L E  A++I  L+P+ + S+V+LSN  S +G+W+  + +R+ M+ 
Sbjct: 760 WSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRI 819

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           KGM + P CSWIE+K+K+HVF+  D++H   D I   L   +EQ+
Sbjct: 820 KGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQM 864



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 170/345 (49%), Gaps = 23/345 (6%)

Query: 84  AKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV---IPSSTALEDLNLGKQLHAWATKVGLQ 140
           A Q  +  AI LF +M   ++ P      S+   + S   L    L   LHA A + G  
Sbjct: 340 ASQGQFLHAISLFLQMRA-SVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSF 398

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           ++ F  +A+L+L IKL             H+P   +  +   GL +   +E   K+F EM
Sbjct: 399 ADRFTANALLNLCIKLPGF----------HHPFGTNGPSGEGGL-ESAAYESMRKVFDEM 447

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
             R+ VSWN +I G ++  R++EA+++  EM R+G +P+  TL   +   A  A +  G 
Sbjct: 448 LERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGM 507

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
             H  A+K     DVFVG+SLI  YA C  M+ S+ VFD  ++ + V WN+++ GYAQNG
Sbjct: 508 VVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNG 567

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKP 377
             EEA+  F RM   G+RP  VT   L+ A  +  L+  G   ++Y  +A+  D   +  
Sbjct: 568 SVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFIS- 626

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              + ++D+  + G    A+     +   P I  W A++ G  +H
Sbjct: 627 ---SSLIDMYCKCGNVDIARRVFNGIQ-SPDIVSWTAMIMGYALH 667


>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
          Length = 494

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 174/464 (37%), Positives = 261/464 (56%), Gaps = 14/464 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI------P 116
           Q  ++     +VS T+ I   ++     EA   FS M L  I P+  TF S++      P
Sbjct: 23  QKLNQSTSETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSACGNFP 82

Query: 117 S-STALEDLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           S S AL DL     LH +A K+GL +S+V VG+AIL +Y K   + +A  VF+   + N 
Sbjct: 83  SGSEALSDL-----LHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNS 137

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           V++ TMI G ++  + ++A+K+F EMP R+++SW AMI G+ + G +EEA+  F EM   
Sbjct: 138 VTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQIS 197

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ P++  +  A+ A  N+ AL  G   H   V    + +V V NSLI  Y +CG +E +
Sbjct: 198 GVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFA 257

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VFD + +R +V+WN+VI G+A NG   E++ +F +M+  G +P+ VT  G L AC+H 
Sbjct: 258 RQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHV 317

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           GLVE+G+ YF   K +     + EH+ C+VDL SR+GR ++A + +  +P  P      +
Sbjct: 318 GLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEVVIGS 377

Query: 415 LLGGCQIHSN-VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           LL  C+ H N   L E   + I  LD +  S+YV+LSN  +  GKW+  S +RR+MK  G
Sbjct: 378 LLAACRNHGNHTILAERLMKHISDLDVKGHSNYVILSNMYAADGKWEGASKMRRKMKGLG 437

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + + PG S IEI    HVF+ GD  H     I  VL   +  +R
Sbjct: 438 LKKQPGYSSIEIDDYTHVFMAGDNAHVETAYIREVLEVISYDLR 481


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 164/511 (32%), Positives = 277/511 (54%), Gaps = 7/511 (1%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           SL   +KL SL     +  Q         P + +  V   ++   F    +VF  + D N
Sbjct: 300 SLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRN 359

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
            VS T +IG F +   + E++ LF++M    +   +F   ++I   +   D+ L +QLH+
Sbjct: 360 TVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHS 419

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
            + K G    V + ++++ +Y K  +++ A  +F      ++VS+T M+    +      
Sbjct: 420 LSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGK 479

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIAAA 251
           A + F  M  RNV++WNAM+G Y Q G  E+ + ++  ML E  ++P+  T        A
Sbjct: 480 AREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCA 539

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           ++ A  +G       VK    LD  V N++I+ Y+KCG + ++  +FD L+ +++V+WNA
Sbjct: 540 DMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNA 599

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE- 370
           +I GY+Q+G G++AIE F+ M   G +P+ ++ + +L +C+H+GLV++G  YF   K + 
Sbjct: 600 MITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDH 659

Query: 371 --DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
              PG+   EH++CMVDLL+R+G   EAK  + ++P  P    W ALL  C+ H N EL 
Sbjct: 660 NVSPGL---EHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELA 716

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
           E AA+ +  LD  D   Y++L+   + AGK  + + +R+ M++KG+ + PG SW+E+K+K
Sbjct: 717 ELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNK 776

Query: 489 VHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           VHVF   D +H     I   L    E+I + 
Sbjct: 777 VHVFKAEDVSHPQVIAIREKLDELMEKIAQL 807



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 161/297 (54%), Gaps = 1/297 (0%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIP 116
            S   ++F  +P  +V S  T++  + +   + +A+  F  M    +  P+ FTFG  + 
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           S  AL    +  QL    TK G Q +  V + I+D++++  +++ A++ F     P V  
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFC 230

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
             +M+ G  K    + AL+LF+ MP R+VVSWN M+   SQ+GR  EA+++ ++M   G+
Sbjct: 231 RNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV 290

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             + +T   ++ A A +++LG GK  HA  ++ L  +D +V ++++  YAKCG  +++  
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARR 350

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           VF  L +RN V+W  +I G+ Q G   E++E F +MR   +  +   L  ++  C++
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSN 407



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 148/321 (46%), Gaps = 35/321 (10%)

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE-DTHNPNVVSYTTMICGLLKRER 189
           H     VGL S VF+ + +L  Y+   ++ +A  +   D   PNV+++  M+ G  K   
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLPCAII 248
             DA +LF  MP R+V SWN ++ GY Q+GR  +A+  F+ M R G  +PN  T  CA+ 
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 249 AAANIA-----------------------ALGMGKSFHAC-AVKFLGKL-------DVFV 277
           +   +                        A G+   F  C AV F  K         VF 
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFC 230

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            NS+++ YAK   ++ +L +F+ + ER++V+WN ++   +Q+GR  EA+     M   G+
Sbjct: 231 RNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV 290

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           R +  T    L AC     +  G    +Q     P  + P   + MV+L ++ G FKEA+
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLP-CIDPYVASAMVELYAKCGCFKEAR 349

Query: 398 EFLYDLPFDPGIGFWKALLGG 418
                L  D     W  L+GG
Sbjct: 350 RVFSSLR-DRNTVSWTVLIGG 369



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 20/209 (9%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +V   N +++ YAK GS+ D+  +F ++  R++ +WN ++ GY Q+GR  +A+E F  MR
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 334 INGIR-PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-------KPEHYACMVD 385
            +G   PN  T    + +C   G        + +  L+  G+L        P+    +VD
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALG--------WHEVALQLLGLLTKFGFQGDPDVATGIVD 205

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445
           +  R G    A +    +   P +    ++L G      V   + A     ++   DV S
Sbjct: 206 MFVRCGAVDFASKQFSQIE-RPTVFCRNSMLAGYAKSYGV---DHALELFESMPERDVVS 261

Query: 446 YVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           + M+ +ALS +G+     ++  +M  +G+
Sbjct: 262 WNMMVSALSQSGRAREALSVAVDMHNRGV 290


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 263/467 (56%), Gaps = 32/467 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+     S   VF E+   +VVS T++I  +A++    EA+ LF  M    I P  +T  
Sbjct: 342 SKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVT 401

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+        L+ GK++H W  +  +  ++FV +A++D+Y K  S+ EA  VF      
Sbjct: 402 AVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVF------ 455

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                     EM  ++++SWN +IGGYS+     EA++LF  +L
Sbjct: 456 -------------------------SEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLL 490

Query: 233 REG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            E    P+  T+ C + A A+++A   G+  H   ++     D  V NSL+  YAKCG++
Sbjct: 491 VEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             + L+FD +T +++V+W  +I GY  +G G+EAI  F +MR  GI P+ ++ + LL+AC
Sbjct: 551 LLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYAC 610

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H+GLV++G+ +F+  + E       EHYAC+VD+L+R+G   +A  F+ ++P  P    
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATI 670

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ALL GC+IH +V+L E  A ++  L+PE+   YV+++N  + A KW+ V  +R+ + +
Sbjct: 671 WGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQ 730

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +G+ + PGCSWIEIK +V++FV GD ++   ++I A LR    ++ E
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIE 777



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 170/356 (47%), Gaps = 33/356 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD+V     +    ++   AK   +  +I LF +M+   +    +TF  V  S ++L 
Sbjct: 150 RVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLR 209

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +N G+QLH +  K G      VG++++  Y                             
Sbjct: 210 SVNGGEQLHGYILKSGFGERNSVGNSLVAFY----------------------------- 240

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
             LK  R + A K+F EM  R+V+SWN++I GY   G  E+ +++F++ML  G+  + +T
Sbjct: 241 --LKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLAT 298

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +       A+   + +G++ H   VK     +    N+L+  Y+KCG ++ + +VF +++
Sbjct: 299 IVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMS 358

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R++V++ ++I GYA+ G   EA++ FE M   GI P+  T+  +L  C    L+++G  
Sbjct: 359 GRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKR 418

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                K  D G       A M D+ ++ G  +EA+    ++     I  W  ++GG
Sbjct: 419 VHEWIKENDMGFDIFVSNALM-DMYAKCGSMREAELVFSEMRVKDIIS-WNTVIGG 472



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 133/291 (45%), Gaps = 33/291 (11%)

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           D +V  A T + RF +  + + A+ L       +I P   T  SV+      + L  GK+
Sbjct: 58  DRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKE 115

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +  +    G   +  +GS +  +Y     ++EA+RVF+                     +
Sbjct: 116 VDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV-------------------K 156

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            E AL             WN ++   +++G    ++ LF +M+  G+  +  T  C   +
Sbjct: 157 IEKAL------------FWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKS 204

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            +++ ++  G+  H   +K        VGNSL++FY K   ++ +  VFD++TER++++W
Sbjct: 205 FSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISW 264

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           N++I GY  NG  E+ +  F +M  +GI  +  T++ +   C  + L+  G
Sbjct: 265 NSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG 315


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 154/440 (35%), Positives = 249/440 (56%), Gaps = 39/440 (8%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           PD  +++   ++  F +    + A+  F RM  + + P+  T    + +   + +L LGK
Sbjct: 462 PD--IITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGK 519

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++H +  +  ++ +  VGSA++ +Y    S+E A  VF                      
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVF---------------------- 557

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     E+  R+VV WN++I   +Q+GR+  A++L  EM    +  N  T+  A+ 
Sbjct: 558 ---------SELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALP 608

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A + +AAL  GK  H   ++       F+ NSLI  Y +CGS++ S  +FD + +R++V+
Sbjct: 609 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS 668

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           WN +I  Y  +G G +A+  F+  R  G++PN +T   LL AC+H+GL+E+G+ YF   K
Sbjct: 669 WNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMK 728

Query: 369 LE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
            E   DP +   E YACMVDLLSR+G+F E  EF+  +PF+P    W +LLG C+IH N 
Sbjct: 729 TEYAMDPAV---EQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 785

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           +L E+AAR +  L+P+   +YV+++N  S AG+W++ + IR  MKE+G+T+ PGCSWIE+
Sbjct: 786 DLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845

Query: 486 KSKVHVFVTGDRNHHMNDEI 505
           K K+H FV GD +H + ++I
Sbjct: 846 KRKLHSFVVGDTSHPLMEQI 865



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 229/505 (45%), Gaps = 58/505 (11%)

Query: 14  LNKLSKLHSLAPNYLIETQKA--SVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           L K  KL++L   + +  Q     V   E    R   V C  ++       ++FD++ + 
Sbjct: 96  LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC--QTGCVEDARRMFDKMSER 153

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NV S T I+  +     YEE I LF  M+   +RP  F F  V  + + L++  +GK ++
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY 213

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH--------------------- 170
            +   +G + N  V  +ILD++IK   ++ A R FE+                       
Sbjct: 214 DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 273

Query: 171 --------------NPNVVSYTTMICGLLKRERFEDALKLFQEMP-----HRNVVSWNAM 211
                          P+ V++  +I G  +  +FE+A K F EM        NVVSW A+
Sbjct: 274 KALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTAL 333

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           I G  Q G + EA+++F +M+ EG+ PN  T+  A+ A  N++ L  G+  H   +K   
Sbjct: 334 IAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEE 393

Query: 272 -KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
              D+ VGNSL+ +YAKC S+E +   F  + + ++V+WNA++ GYA  G  EEAIE   
Sbjct: 394 LDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLS 453

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            M+  GI P+ +T  GL+      G  +    +F   ++   GM    +   +   L+  
Sbjct: 454 EMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQ--RMHSMGM--DPNTTTISGALAAC 509

Query: 391 GRF------KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444
           G+       KE   ++     +   G   AL+    ++S  +  E A      L   DV 
Sbjct: 510 GQVRNLKLGKEIHGYVLRNHIELSTGVGSALI---SMYSGCDSLEVACSVFSELSTRDVV 566

Query: 445 SYVMLSNALSVAGKWDNVSNIRREM 469
            +  + +A + +G+  N  ++ REM
Sbjct: 567 VWNSIISACAQSGRSVNALDLLREM 591



 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 214/419 (51%), Gaps = 24/419 (5%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDL-----NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +S  ++S +F    + F E+  L     NVVS T +I    +  +  EA+ +F +M+L  
Sbjct: 298 ISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEA 162
           ++P+  T  S + + T L  L  G+++H +  KV  L S++ VG++++D Y K  S+E A
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQT 218
            R F      ++VS+  M+ G   R   E+A++L  EM  +    ++++WN ++ G++Q 
Sbjct: 418 RRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQY 477

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G  + A+  F  M   G+ PN +T+  A+ A   +  L +GK  H   ++   +L   VG
Sbjct: 478 GDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVG 537

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           ++LIS Y+ C S+E +  VF +L+ R++V WN++I   AQ+GR   A++    M ++ + 
Sbjct: 538 SALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE 597

Query: 339 PNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
            N VT++  L AC+    + +G   + +  +  L+    +       ++D+  R G  ++
Sbjct: 598 VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI----LNSLIDMYGRCGSIQK 653

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIH----SNVELGEFAARRILALDPEDVSSYVMLS 450
           ++  ++DL     +  W  ++    +H      V L  F   R + L P  ++   +LS
Sbjct: 654 SRR-IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNL--FQXFRTMGLKPNHITFTNLLS 709



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 122/276 (44%), Gaps = 37/276 (13%)

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           A  L S M L N       + S++     L +L LG Q+HA     G+    F+GS +L+
Sbjct: 73  AAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLE 132

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTT---MICGLLKRERFEDALKLFQEMPHRNVVSW 208
           +Y +   +E+A R+F+     NV S+T    M CGL                        
Sbjct: 133 VYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGL------------------------ 168

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
                     G  EE + LF  M+ EG+ P+H   P    A + +    +GK  +   + 
Sbjct: 169 ----------GDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLS 218

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
              + +  V  S++  + KCG M+ +   F+++  +++  WN ++ GY   G  ++A++ 
Sbjct: 219 IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKC 278

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
              M+++G++P+ VT   ++     +G  E+   YF
Sbjct: 279 ISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYF 314



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 142/353 (40%), Gaps = 72/353 (20%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S  D       VF E+   +VV   +II   A+      A+ L   M L N+  + 
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNT 600

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  S +P+ + L  L  GK++H +  + GL +  F+ ++++D+Y +  SI+++ R+F+ 
Sbjct: 601 VTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD- 659

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                           L  +R              ++VSWN MI  Y   G   +AVNLF
Sbjct: 660 ----------------LMPQR--------------DLVSWNVMISVYGMHGFGMDAVNLF 689

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
                 GL PNH T    + A ++   +  G  +                  + + YA  
Sbjct: 690 QXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYF---------------KMMKTEYAMD 734

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            ++E    + D L+               + G+  E +EF E+M      PN      LL
Sbjct: 735 PAVEQYACMVDLLS---------------RAGQFNETLEFIEKMP---FEPNAAVWGSLL 776

Query: 349 WACN---HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
            AC    +  L E    Y  + + +  G     +Y  M ++ S +GR+++A +
Sbjct: 777 GACRIHCNPDLAEYAARYLFELEPQSSG-----NYVLMANIYSAAGRWEDAAK 824


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 166/449 (36%), Positives = 255/449 (56%), Gaps = 40/449 (8%)

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           +EV D   VS  ++I  + +     +A+ L+  M+        FT  SV+ + + +EDL+
Sbjct: 201 EEVRD--EVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLS 258

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS-IEEATRVFEDTHNPNVVSYTTMICGL 184
            G Q HA A K G   N  VGS ++D+Y K  + + E+ +VFE+            ICG 
Sbjct: 259 GGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEE------------ICG- 305

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR-NEEAVNLFIEMLREGLVPNHSTL 243
                              ++V WN MI GYSQ    + EA+  F +M R G  P+  + 
Sbjct: 306 ------------------SDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSF 347

Query: 244 PCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
            CAI A +N+++   GK FHA A+K  +    + V N+L++ Y+KCG+++D+  +F ++ 
Sbjct: 348 VCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMP 407

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           + N VT N++I GYAQ+G G E++  FE+M    I P  +TL+ +L AC HTG VE+G  
Sbjct: 408 QHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKK 467

Query: 363 YFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF+  K  D   ++PE  HY+CM+DLL R+G+  EA+  +  +PF PG   W ALLG C+
Sbjct: 468 YFNMMK--DIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACR 525

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            + N+EL E AA + L L+P +   Y+ML++  S A KW+  + IR+ M+++G+ + PGC
Sbjct: 526 KYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGC 585

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           SWIE+  +VHVFV  D +H    EI+  L
Sbjct: 586 SWIELNKRVHVFVAEDNSHPRIKEIHMYL 614



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 166/347 (47%), Gaps = 35/347 (10%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
            H +FD++P  ++VS  T+I  +A +     A+ LF  M  + +    FTF  VI  +  
Sbjct: 93  AHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGLVMDGFTFSGVI--TAC 150

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
              + L +QLH+ A   G  S V V +++L  Y K   +EEA  VF              
Sbjct: 151 CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNG------------ 198

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                          + +E+  R+ VSWN+MI  Y Q  R  +A+ L+ +M+  G   + 
Sbjct: 199 ---------------MGEEV--RDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDM 241

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS-MEDSLLVFD 299
            TL   +   + +  L  G  FHA A+K     +  VG+ LI  YAKCG+ M +S  VF+
Sbjct: 242 FTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFE 301

Query: 300 KLTERNIVTWNAVICGYAQNGR-GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           ++   ++V WN +I GY+QN     EA+E F +M+  G  P+  + +  + AC++     
Sbjct: 302 EICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPS 361

Query: 359 KGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +G  + + A K E P      + A +V + S+ G  ++A++    +P
Sbjct: 362 QGKQFHALAMKSEIPSNQISVNNA-LVTMYSKCGNLQDARKLFQRMP 407



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 11/314 (3%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           +F  ++ S  A +DL  GK LH    K  + S+ ++ +  + LY K + +  A   F  T
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           H PNV S+  +I    K      A  LF ++P  ++VS+N +I  Y+  G    A++LF 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG--NSLISFYAK 287
           EM   GLV +  T    I A  N   +G+ +  H+ A  F    D +V   NSL+++Y+K
Sbjct: 130 EMREMGLVMDGFTFSGVITACCN--HVGLIRQLHSLA--FSSGFDSYVSVKNSLLTYYSK 185

Query: 288 CGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            G +E++ +VF+ + E  R+ V+WN++I  Y Q+ RG +A+  +  M   G   +  TL 
Sbjct: 186 NGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLA 245

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLP 404
            +L   +    +  G  +   AK    G  K  H    ++D+ ++ G        +++  
Sbjct: 246 SVLTTFSCVEDLSGGLQF--HAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI 303

Query: 405 FDPGIGFWKALLGG 418
               +  W  ++ G
Sbjct: 304 CGSDLVVWNTMISG 317



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 135/326 (41%), Gaps = 72/326 (22%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYE-EAIYLFSRMLLLNIRPSEF 109
           CG+     S   +VF+E+   ++V   T+I  +++      EA+  F +M      P + 
Sbjct: 289 CGA---GMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDC 345

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFED 168
           +F   I + + L   + GKQ HA A K  + SN + V +A++ +Y K             
Sbjct: 346 SFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSK------------- 392

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                        CG L     +DA KLFQ MP  N V+ N++I GY+Q G   E++NLF
Sbjct: 393 -------------CGNL-----QDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLF 434

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF----------------HACAVKFLGK 272
            +ML   + P   TL   + A A+   +  GK +                ++C +  LG+
Sbjct: 435 EQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGR 494

Query: 273 ----------LDVF-------VGNSLISFYAKCGSM---EDSLLVFDKLTERNIVTWNAV 312
                     +D            +L+    K G+M   E +   F +L   N V +  +
Sbjct: 495 AGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIML 554

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIR 338
              Y+   + EEA    + MR  GIR
Sbjct: 555 ASMYSAARKWEEAARIRKLMRDRGIR 580


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 176/506 (34%), Positives = 271/506 (53%), Gaps = 48/506 (9%)

Query: 7    ICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFD 66
            +C SS+ L K   +H+ +   L +T++         A+      CG+  D        F+
Sbjct: 643  VCLSSVVLGK--GIHACSVKTLYDTERHVYG-----ALLDMYAKCGNIED----ARLAFE 691

Query: 67   EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
             V + +V+  + +I R+A+ +  E+A  LF RM+  ++ P+EF+  SV+ +   +  L+L
Sbjct: 692  MVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDL 751

Query: 127  GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
            GKQ+H  A K+G +S +FVG+A++DLY K S +E +                        
Sbjct: 752  GKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESS------------------------ 787

Query: 187  RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                   L++F  +   N VSWN +I GYS++G  E A+++F EM    +     T    
Sbjct: 788  -------LEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSV 840

Query: 247  IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
            + A A+ A++      H    K     D  V NSLI  YAKCG + D+  +F+ L E ++
Sbjct: 841  LRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDL 900

Query: 307  VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
            V+WNA+I GYA +G+   A E F+ M  N I+ N +T + LL  C  TGLV +G S F  
Sbjct: 901  VSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDS 960

Query: 367  AKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
             +L+   +P M   EHY C+V LL R+GR  +A  F+ D+P  P    W+ALL  C +H 
Sbjct: 961  MRLDHGIEPSM---EHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHK 1017

Query: 424  NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
            NVELG F+A ++L ++P+D ++YV+LSN  S AG  D V+  R+ M+  G+ + PG SW+
Sbjct: 1018 NVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWV 1077

Query: 484  EIKSKVHVFVTGDRNHHMNDEIYAVL 509
            EIK +VH F  G  +H     I A+L
Sbjct: 1078 EIKGEVHAFSVGSEDHPCMRVINAML 1103



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 157/310 (50%), Gaps = 31/310 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F S H+VFD +P+ N+VS  T++   A +  +EEA  LF R+       ++F   +V+  
Sbjct: 481 FGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKL 540

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             A++ L L   +HA A K+G   N FVGSA++D Y                        
Sbjct: 541 VVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAY------------------------ 576

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
              +CG++      DA ++F  +  ++ V+W AM+  YS+    E  + +F +M      
Sbjct: 577 --SMCGVVS-----DARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSK 629

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            N   L   + AA  ++++ +GK  HAC+VK L   +  V  +L+  YAKCG++ED+ L 
Sbjct: 630 LNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLA 689

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +T  +++ W+ +I  YAQ  + E+A E F RM  + + PN  +L  +L AC +  L+
Sbjct: 690 FEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLL 749

Query: 358 EKGYSYFSQA 367
           + G    + A
Sbjct: 750 DLGKQIHNHA 759



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 137/312 (43%), Gaps = 39/312 (12%)

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVG--LQSNVFVGSAILDLYIKLSSIEEATRVF 166
           + +  ++    A  D   G+ +H    + G   + ++F  + +L++Y K+     A RVF
Sbjct: 429 YAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVF 488

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
           +                                +P RN+VS+  ++ G++  G  EEA  
Sbjct: 489 DG-------------------------------LPERNMVSFVTLVQGHALRGEFEEASA 517

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF  +  EG   N   L   +     +  LG+    HACA K     + FVG++LI  Y+
Sbjct: 518 LFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYS 577

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
            CG + D+  VFD +  ++ V W A++  Y++N   E  ++ F +MR+   + N   L  
Sbjct: 578 MCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTS 637

Query: 347 LLWA--CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +L A  C  + ++ KG    S   L D    +   Y  ++D+ ++ G  ++A+   +++ 
Sbjct: 638 VLRAAVCLSSVVLGKGIHACSVKTLYD---TERHVYGALLDMYAKCGNIEDAR-LAFEMV 693

Query: 405 FDPGIGFWKALL 416
            +  +  W  ++
Sbjct: 694 TNDDVILWSLMI 705


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 173/504 (34%), Positives = 273/504 (54%), Gaps = 42/504 (8%)

Query: 53  SESDKFSSVHQ---VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSE 108
           S S   +SVH     F ++ + NV     +I  F    +   A+  +  ML   N+ P+ 
Sbjct: 79  SASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTS 138

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +TF S++ + T +  + LG+ +H    K G +S++FV +A++D Y KL  + EA +VF++
Sbjct: 139 YTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDE 198

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY------------- 215
               +  ++T M+  L +    + A KLF+EMP RN  +WN MI GY             
Sbjct: 199 MCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLF 258

Query: 216 ------------------SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
                             SQ  + ++A+ ++ EM   G++P+  T+     A A+I AL 
Sbjct: 259 NQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALE 318

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           +GK  H   +     LDV++G++L+  YAKCGS++ SLL+F KLT++N+  WNAVI G A
Sbjct: 319 LGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLA 378

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF-SQAKLEDPGMLK 376
            +G  E+A+  F  M    I PNGVT + +L AC H GLV++G S F S  +  D   ++
Sbjct: 379 VHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYD---IR 435

Query: 377 PE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR 434
           P+  HY CMVD+LS+SG   EA E +  + F+P    W ALL GC++H N E+ E A  +
Sbjct: 436 PDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQ 495

Query: 435 ILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM-TRVPGCSWIEIKSKVHVFV 493
           ++ L+P +   Y +L +  +    W  V++IR  MKEKG+  + PG SWIE++  +H F 
Sbjct: 496 LMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFS 555

Query: 494 TGDRNHHMNDEIYAVLRSCTEQIR 517
               +H  +D+IY +L     Q++
Sbjct: 556 ASADSHPDSDKIYFILTELDGQLK 579


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 262/467 (56%), Gaps = 32/467 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+     S   VF E+ D +VVS T++I  +A++    EA+ LF  M    I P  +T  
Sbjct: 342 SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVT 401

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+        L+ GK++H W  +  L  ++FV +A++D+Y K  S++EA  VF      
Sbjct: 402 AVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF------ 455

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                     EM  ++++SWN +IGGYS+     EA++LF  +L
Sbjct: 456 -------------------------SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490

Query: 233 REG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            E    P+  T+ C + A A+++A   G+  H   ++     D  V NSL+  YAKCG++
Sbjct: 491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             + ++FD +  +++V+W  +I GY  +G G+EAI  F +MR  GI  + ++ + LL+AC
Sbjct: 551 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H+GLV++G+ +F+  + E       EHYAC+VD+L+R+G   +A  F+ ++P  P    
Sbjct: 611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI 670

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ALL GC+IH +V+L E  A ++  L+PE+   YV+++N  + A KW+ V  +R+ + +
Sbjct: 671 WGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQ 730

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +G+ + PGCSWIEIK +V++FV GD ++   + I A LR    ++ E
Sbjct: 731 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 777



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 172/356 (48%), Gaps = 33/356 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDEV     +    ++   AK   +  +I LF +M+   +    +TF  V  S ++L 
Sbjct: 150 RVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLR 209

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            ++ G+QLH +  K G      VG++++  Y                             
Sbjct: 210 SVHGGEQLHGFILKSGFGERNSVGNSLVAFY----------------------------- 240

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
             LK +R + A K+F EM  R+V+SWN++I GY   G  E+ +++F++ML  G+  + +T
Sbjct: 241 --LKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLAT 298

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +       A+   + +G++ H+  VK     +    N+L+  Y+KCG ++ +  VF +++
Sbjct: 299 IVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 358

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +R++V++ ++I GYA+ G   EA++ FE M   GI P+  T+  +L  C    L+++G  
Sbjct: 359 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 418

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                K  D G       A M D+ ++ G  +EA+    ++     I  W  ++GG
Sbjct: 419 VHEWIKENDLGFDIFVSNALM-DMYAKCGSMQEAELVFSEMRVKDIIS-WNTIIGG 472



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 158/351 (45%), Gaps = 39/351 (11%)

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           D +V  A T + RF +  + E A+ L       +I P   T  SV+      + L  GK+
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKE 115

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +  +    G   +  +GS +  +Y     ++EA+RVF++                    +
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV-------------------K 156

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            E AL             WN ++   +++G    ++ LF +M+  G+  +  T  C   +
Sbjct: 157 IEKAL------------FWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKS 204

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            +++ ++  G+  H   +K        VGNSL++FY K   ++ +  VFD++TER++++W
Sbjct: 205 FSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISW 264

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           N++I GY  NG  E+ +  F +M ++GI  +  T++ +   C  + L+  G +  S   +
Sbjct: 265 NSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS---I 321

Query: 370 EDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                   E   C  ++D+ S+ G    AK    ++  D  +  + +++ G
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS-DRSVVSYTSMIAG 371


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 255/443 (57%), Gaps = 8/443 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K    H++FD++P+ + VS   ++  + + +  E A+  F++M + +I     ++ ++I 
Sbjct: 120 KVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIA----SWNTLI- 174

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
            S   ++  + K    ++  V  + N    SA++  Y++   +E A  ++++    +VV 
Sbjct: 175 -SGFAQNGQMQKAFDLFS--VMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVV 231

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
            T M+ G +K  + E A ++FQ M  +N+V+WN+MI GY +  R E+ + +F  M+   +
Sbjct: 232 ETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRV 291

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN  +L   ++  +N++AL +G+  H    K     D     SLIS Y KCG ++ +  
Sbjct: 292 RPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWK 351

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F ++  +++++WNA+I GYAQ+G G +A+  F++MR   ++P+ +T + ++ ACNH G 
Sbjct: 352 LFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGF 411

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V+ G  YF   K E     KP HY C++DLL R+GR  EA   + ++PF P    +  LL
Sbjct: 412 VDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLL 471

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C+IH N++L EFAAR +L LDP   + YV L+N  +   KWD V+ +R+ MKE  + +
Sbjct: 472 GACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVK 531

Query: 477 VPGCSWIEIKSKVHVFVTGDRNH 499
           +PG SWIEIKS  H F + DR H
Sbjct: 532 IPGYSWIEIKSVTHEFRSSDRLH 554



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 144/332 (43%), Gaps = 51/332 (15%)

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE----------------- 167
           N+   LH     V   S+V   +  +  +++   +E A  VFE                 
Sbjct: 60  NVTPNLH-----VDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGY 114

Query: 168 --------DTH-------NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
                   + H        P+ VSY  M+   L+    E AL  F +MP +++ SWN +I
Sbjct: 115 TKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLI 174

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
            G++Q G+ ++A +LF  M  +    N  +    I        L   +  +    K +G 
Sbjct: 175 SGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMISGYVEHGDLEAAEELY----KNVGM 226

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
             V V  ++++ Y K G +E +  +F ++  +N+VTWN++I GY +N R E+ ++ F+ M
Sbjct: 227 KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRS 390
             + +RPN ++L  +L  C++   +  G       +L     L  +  AC  ++ +  + 
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGR---QMHQLVSKSPLSKDTTACTSLISMYCKC 343

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           G    A +   ++P    I  W A++ G   H
Sbjct: 344 GDLDSAWKLFLEMPRKDVIS-WNAMISGYAQH 374



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ-NGRGEEAIEFFERM 332
           DV   N  I+ + +   +E +  VF+K++ R  VTWN ++ GY +  G+ +EA E F+++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
                 P+ V+   +L     +  VE   ++F++  ++D        +  ++   +++G+
Sbjct: 132 P----EPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIA-----SWNTLISGFAQNGQ 182

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
            ++A +    +P   G+  W A++ G   H ++E  E
Sbjct: 183 MQKAFDLFSVMPEKNGVS-WSAMISGYVEHGDLEAAE 218



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 14/199 (7%)

Query: 37  QKLETPAIRTDSVSCGS------ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYE 90
           Q +    +  D+ +C S      +     S  ++F E+P  +V+S   +I  +A+     
Sbjct: 319 QLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGR 378

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ-LHAWATKVGLQSNVFVGSAI 149
           +A++LF +M    ++P   TF +VI +      ++LG Q   +   + G+++     + +
Sbjct: 379 KALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCV 438

Query: 150 LDLYIKLSSIEEATRVFED-THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           +DL  +   ++EA  + ++    P+   Y T    LL   R    L L  E   RN+++ 
Sbjct: 439 IDLLGRAGRLDEAVSLIKEMPFKPHAAIYGT----LLGACRIHKNLDL-AEFAARNLLNL 493

Query: 209 NAMIG-GYSQTGRNEEAVN 226
           +     GY Q      A N
Sbjct: 494 DPTSATGYVQLANIYAATN 512


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 174/504 (34%), Positives = 273/504 (54%), Gaps = 42/504 (8%)

Query: 53  SESDKFSSVHQ---VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSE 108
           S S   +SVH     F ++ + NV     +I  F    +   A+  +  ML   N+ P+ 
Sbjct: 176 SASFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTS 235

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +TF S++ + T +  + LG+ +H    K G +S++FV +A++D Y KL  + EA +VF++
Sbjct: 236 YTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDE 295

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY------------- 215
               +  ++T M+  L +    + A KLF+EMP RN  +WN MI GY             
Sbjct: 296 MCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLF 355

Query: 216 ------------------SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
                             SQ  + ++A+ ++ EM   G++P+  T+     A A+I AL 
Sbjct: 356 NQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALE 415

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           +GK  H   +     LDV++G++L+  YAKCGS++ SLL+F KLT++N+  WNAVI G A
Sbjct: 416 LGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLA 475

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF-SQAKLEDPGMLK 376
            +G  E+A+  F  M    I PNGVT + +L AC H GLV++G S F S  +  D   ++
Sbjct: 476 VHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYD---IR 532

Query: 377 PE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR 434
           P+  HY CMVD+LS+SG   EA E +  + F+P    W ALL GC++H N E+ E A  +
Sbjct: 533 PDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQ 592

Query: 435 ILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM-TRVPGCSWIEIKSKVHVFV 493
           ++ L+P +   Y +L +  +    W  V++IR  MKEKG+  + PG SWIE++  +H F 
Sbjct: 593 LMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFS 652

Query: 494 TGDRNHHMNDEIYAVLRSCTEQIR 517
               +H  +D+IY VL     Q++
Sbjct: 653 ASADSHPDSDKIYFVLTELDGQLK 676


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 248/425 (58%), Gaps = 6/425 (1%)

Query: 96  FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
           F  M+  +   +  T+ SV+ +    +DL LG Q+H    + G+  +  V +A++D+Y +
Sbjct: 149 FVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAE 208

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
              ++ A  +FE     ++ S+T++I GL++  + + A  LF  MP R+ ++W AMI GY
Sbjct: 209 CGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGY 268

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
            Q GR  +A+  F  M    +  +  T+   + A A + AL  G+       +   K+DV
Sbjct: 269 VQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDV 328

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           FVGN+LI  Y+KCGS+E +L VF  +  R+  TW A+I G A NGRGEEAI+ F RM   
Sbjct: 329 FVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRA 388

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGR 392
              P+ VT +G+L AC H GLV+KG  +F   ++A    P ++   HY C++D+L R+G+
Sbjct: 389 LQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVV---HYGCLIDVLGRAGK 445

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
            KEA + +  +P  P    W  LL  C+++ N E+GE AA R+L LDP++ ++Y++LSN 
Sbjct: 446 LKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNM 505

Query: 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
            + + +W +V  IR+ + EKG+ + PGCS IE+   +H FV  DR+H MN EIY+ L + 
Sbjct: 506 YAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEIYSKLENV 565

Query: 513 TEQIR 517
              +R
Sbjct: 566 LTDLR 570



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 128/295 (43%), Gaps = 36/295 (12%)

Query: 38  KLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97
           ++ + A  T  +S    S +      +FD +P+ + ++ T +I  + +   + +A+  F 
Sbjct: 223 QMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFR 282

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
            M +  +R  EFT  SV+ +   L  L  G+    +  ++G++ +VFVG+A++D+Y K  
Sbjct: 283 YMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCG 342

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
           SIE A  VF+D HN +  ++T +I GL                               + 
Sbjct: 343 SIERALDVFKDMHNRDKFTWTAIILGL-------------------------------AV 371

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
            GR EEA+++F  MLR    P+  T    + A  +   +  G+ F     +        V
Sbjct: 372 NGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVV 431

Query: 278 G-NSLISFYAKCGSMEDSLLVFDKLTER-NIVTWNAVICG---YAQNGRGEEAIE 327
               LI    + G ++++L   DK+  + N   W  ++     Y  +  GE A E
Sbjct: 432 HYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAE 486



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 180/444 (40%), Gaps = 76/444 (17%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP- 116
            S    + D +P     +A++ +      H  EEA+  + RML    RP  +TF S++  
Sbjct: 5   LSRARSLLDGIPHRRGRAASSSV----SGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKA 60

Query: 117 ----SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
                  A+   ++G  +HA   K G++SN    S+++ +Y        A          
Sbjct: 61  AAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAAR--------- 111

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
              +     C           L      P    V WNA+I G++++GR E +   F++M+
Sbjct: 112 ---AVLEAAC-----------LATGGGAP----VMWNALISGHNRSGRFELSCCSFVDMV 153

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R   +    T    + A      L +G   H   ++     D  V N+L+  YA+CG M+
Sbjct: 154 RASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMD 213

Query: 293 DSLL-------------------------------VFDKLTERNIVTWNAVICGYAQNGR 321
            + +                               +FD + ER+ + W A+I GY Q GR
Sbjct: 214 AAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGR 273

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-YSYFSQAKLEDPGMLKPEHY 380
             +A+E F  M+I  +R +  T++ ++ AC   G +E G ++     +L     +K + +
Sbjct: 274 FRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLG----IKMDVF 329

Query: 381 A--CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG-EFAARRILA 437
               ++D+ S+ G  + A +   D+        W A++ G  ++   E   +   R + A
Sbjct: 330 VGNALIDMYSKCGSIERALDVFKDMHNRDKFT-WTAIILGLAVNGRGEEAIDMFYRMLRA 388

Query: 438 LDPEDVSSYVMLSNALSVAGKWDN 461
           L   D  ++V +  A + AG  D 
Sbjct: 389 LQTPDEVTFVGVLTACTHAGLVDK 412


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 173/536 (32%), Positives = 289/536 (53%), Gaps = 37/536 (6%)

Query: 19  KLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT 78
           ++H     + IE   A +  L +  ++  S    S S   +S  ++FDE+P  N    TT
Sbjct: 169 QMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTT 228

Query: 79  IIGRFAKQ-----------------------------HH--YEEAIYLFSRMLLLNIRPS 107
           +I  + +                              HH  +E+A+ LF +M LL ++  
Sbjct: 229 LITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVD 288

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN----VFVGSAILDLYIKLSSIEEAT 163
           E T+ SVI +        LGKQ+HA+  K  L  +    + VG+ ++ LY K   ++ A 
Sbjct: 289 ESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGAR 348

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           ++F +    +++++ T++ G +   R E+A   F +MP +N+++W  MI G +Q G  E+
Sbjct: 349 KIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQ 408

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A+ LF +M  +G  PN      AI A + + AL  G+  HA  V       + VGN++I+
Sbjct: 409 ALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMIT 468

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YA+CG +E +  +F  +   + V+WN++I    Q+G G +AIE +E+M   GI P+  T
Sbjct: 469 MYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRT 528

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYD 402
            L +L AC+H GLVE+G  YF+ + LE+ G+   E HYA M+DL  R+G+F +AK  +  
Sbjct: 529 FLTVLSACSHAGLVEEGNRYFN-SMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDS 587

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +PF+     W+ALL GC+ H N++LG  AA ++  L P+   +YV+LSN  +  G+W++V
Sbjct: 588 MPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDV 647

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +  R+ M+++G+ + P CSW E+++KVHVF+  D  H     IY  L     ++++
Sbjct: 648 ARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKK 703



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 167/401 (41%), Gaps = 54/401 (13%)

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L   +L + +H      G +    + + ++D+Y K S    A ++F++   P+V++ TT+
Sbjct: 26  LSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTL 85

Query: 181 ICGLLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           I         + A ++F E P   R+ V +NAMI GYS       A+ LF  M      P
Sbjct: 86  ITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQP 145

Query: 239 NHSTLPCAIIAAANIAALGMGK--SFHACAVKFLGKLDVFVGNSLISFYAKC-------- 288
           +  T   ++++A+ +      +    H   VKF  ++   V N+L+S Y KC        
Sbjct: 146 DDFTF-ASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSS 204

Query: 289 --------------------------------GSMEDSLLVFDKLTERNIVTWNAVICGY 316
                                           G +  +  + D +TE+  + WNA+I GY
Sbjct: 205 SSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGY 264

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPG 373
             +G  E+A+  F +MR+ G++ +  T   ++ AC   G    G   ++Y  + +L    
Sbjct: 265 LHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDR 324

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
                    ++ L  + G+   A++  Y++P    I  W  LL G      +E     A+
Sbjct: 325 DFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIIT-WNTLLSGYVNAGRME----EAK 379

Query: 434 RILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
              A  PE ++ ++ ++ + L+  G  +    +  +MK  G
Sbjct: 380 SFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDG 420


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 253/458 (55%), Gaps = 43/458 (9%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++FDE+P+ NVVS TT++   A++   E A  +F  M                P     
Sbjct: 131 QRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSM----------------PD---- 170

Query: 122 EDLNLGKQLHAWATKVG--LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
                 + L +WA  +   +++ +FV               EA  +FE     NVV+ T 
Sbjct: 171 ------RNLVSWAAMISGCVENGMFV---------------EARELFEAMPEKNVVACTA 209

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           MI G  K+   + A +LF  +  ++V+SWNAMI GY   G  EEA+ L   M REG+ P+
Sbjct: 210 MITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPD 269

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           H+TL   + A + +A L  GKS HA A+K + +  +   N+L++ Y+KCG++ +S LVF 
Sbjct: 270 HATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFI 329

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            L  ++IV+WN +I  YAQ+G+ ++ I  F  M + G+ P+ +T L +L AC H G+V+ 
Sbjct: 330 NLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDA 389

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
               F     +     + EHYAC+VD+LSR+G+ ++A  ++  +P       W +LLG C
Sbjct: 390 SLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNVWGSLLGAC 449

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           QIH NV+LGE AA+ ++  D +    YV+LSN  + AG W  V+ IR +MKE+G+ + PG
Sbjct: 450 QIHGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQIRGQMKERGVKKQPG 509

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            SW EI ++VH+FV GD +H    +I + LR  +  +R
Sbjct: 510 YSWTEIGNEVHMFVGGDASHPEMRKIISELRKISFHMR 547



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 183/410 (44%), Gaps = 60/410 (14%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRF--AKQHHYEEAIYLFSRMLLLNIRP 106
           +S  + +   ++  +VFD +   +VVS   ++     A +HH   A  LF   +     P
Sbjct: 22  ISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAM-----P 76

Query: 107 SE--FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           S    ++ S+I    A  DL+      A A     + NV   +A+L   ++L  + +A R
Sbjct: 77  SRDVVSWNSIIAGCLAHGDLDAASAYFAGAP----ERNVATWNAMLAGLVRLGRVVDAQR 132

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           +F++    NVVSYTTM+  L +R   E A ++F  MP RN+VSW AMI G  + G   EA
Sbjct: 133 LFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEA 192

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
             LF  M      P  + + C                                  ++I+ 
Sbjct: 193 RELFEAM------PEKNVVAC---------------------------------TAMITG 213

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           + K G ++ +  +FD +  +++++WNA+I GY  NG GEEA+     M   G++P+  TL
Sbjct: 214 HCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATL 273

Query: 345 LGLLWACNHTGLVEKGYSYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           + +L AC+   L+ +G S  + A   + + G+        ++ + S+ G   E++    +
Sbjct: 274 IAVLTACSALALLRQGKSTHAIAIKAMLESGI---SFSNALMTMYSKCGNVGESELVFIN 330

Query: 403 LPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
           L     I  W  ++     H   +  +  F    +  L P+D++   +LS
Sbjct: 331 LR-TKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLS 379



 Score = 38.9 bits (89), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           +I +L  C +   L +    H++A   ++E+  +      + A+ T    CG+  +    
Sbjct: 273 LIAVLTACSALALLRQGKSTHAIAIKAMLESGISF-----SNALMTMYSKCGNVGES--- 324

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS--S 118
              VF  +   ++VS  TII  +A+   Y++ I LF  M +  + P + TF SV+ +   
Sbjct: 325 -ELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGH 383

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
             + D +L K     ++K  +       + I+D+  +   +E+A+
Sbjct: 384 VGMVDASL-KLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKAS 427


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 160/498 (32%), Positives = 272/498 (54%), Gaps = 38/498 (7%)

Query: 16  KLSKLHS--LAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           KL  +H   +  +Y I+ +K  +  +   A+      CG       S  ++FD + + NV
Sbjct: 143 KLGAMHKARIIDDY-IQRKKFQLDVILGTAMIDMYAKCGC----VESAREIFDRMEEKNV 197

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           +S + +I  +       +A+ LF  ML   + P + T  S++ + + L++L +G+ +H  
Sbjct: 198 ISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHI 257

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             K GL  + FV +A++D+Y K   IE+A                          RF   
Sbjct: 258 VYKFGLDLDHFVCAALVDMYGKCREIEDA--------------------------RF--- 288

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             LF +MP R++V+W  MIGGY++ G   E++ LF +M  EG+VP+   +   + A A +
Sbjct: 289 --LFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKL 346

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
            A+   ++      +   +LDV +G ++I  +AKCG +E +  +FD++ E+N+++W+A+I
Sbjct: 347 GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMI 406

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
             Y  +G+G +A++ F  M  +GI PN +TL+ LL+AC+H GLVE+G  +FS    +   
Sbjct: 407 AAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSV 466

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
               +HY C+VDLL R+GR  EA + +  +  +   G W A LG C+ H +V L E AA 
Sbjct: 467 RADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAAT 526

Query: 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFV 493
            +L L P++   Y++LSN  + AG+W++V+  R  M ++ + ++PG +WIE+ +K H F 
Sbjct: 527 SLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFS 586

Query: 494 TGDRNHHMNDEIYAVLRS 511
            GD  H  + EIY +L+S
Sbjct: 587 VGDTTHPRSKEIYEMLKS 604



 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 188/387 (48%), Gaps = 45/387 (11%)

Query: 47  DSVSCGSESDKFSSVHQV------FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           D   C +  D +    ++      FD++ + ++V+ T +IG +A+     E++ LF +M 
Sbjct: 64  DHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR 123

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
              + P +    +V+ +   L  ++  + +  +  +   Q +V +G+A++D+Y K   +E
Sbjct: 124 EEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVE 183

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
            A  +F+                                M  +NV+SW+AMI  Y   G+
Sbjct: 184 SAREIFD-------------------------------RMEEKNVISWSAMIAAYGYHGQ 212

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
             +A++LF  ML  G++P+  TL   + A +++  L MG+  H    KF   LD FV  +
Sbjct: 213 GRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAA 272

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L+  Y KC  +ED+  +FDK+ ER++VTW  +I GYA+ G   E++  F++MR  G+ P+
Sbjct: 273 LVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPD 332

Query: 341 GVTLLGLLWACNHTGLVEKGYS---YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            V ++ +++AC   G + K  +   Y  + K +   +L       M+D+ ++ G  + A+
Sbjct: 333 KVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILG----TAMIDMHAKCGCVESAR 388

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSN 424
           E ++D   +  +  W A++     H  
Sbjct: 389 E-IFDRMEEKNVISWSAMIAAYGYHGQ 414



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 173/342 (50%), Gaps = 37/342 (10%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           ++G FAK   Y      F  ++    RP  +T   VI +   L++L +G+ +H    K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L  + FV +A++D+Y+K   IE+A  +F+     ++V++T MI                 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMI----------------- 103

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
                         GGY++ G+  E++ LF +M  EG+VP+   +   + A A + A+  
Sbjct: 104 --------------GGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHK 149

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
            +       +   +LDV +G ++I  YAKCG +E +  +FD++ E+N+++W+A+I  Y  
Sbjct: 150 ARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGY 209

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +G+G +A++ F  M  +G+ P+ +TL  LL+AC+    ++ G        +   G L  +
Sbjct: 210 HGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG--RLIHHIVYKFG-LDLD 266

Query: 379 HYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           H+ C  +VD+  +    ++A+ FL+D   +  +  W  ++GG
Sbjct: 267 HFVCAALVDMYGKCREIEDAR-FLFDKMPERDLVTWTVMIGG 307



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 8/217 (3%)

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           M+GG+++ G        F E++R G  P++ TLP  I A  ++  L MG+  H    KF 
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
             LD FV  +L+  Y KC  +ED+  +FDK+ ER++VTW  +I GYA+ G+  E++  FE
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGY---SYFSQAKLEDPGMLKPEHYACMVDLL 387
           +MR  G+ P+ V ++ +++AC   G + K      Y  + K +   +L       M+D+ 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMY 176

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
           ++ G  + A+E ++D   +  +  W A++     H  
Sbjct: 177 AKCGCVESARE-IFDRMEEKNVISWSAMIAAYGYHGQ 212


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 255/443 (57%), Gaps = 8/443 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K    H++FD++P+ + VS   ++  + + +  + A+  F++M + +I     ++ ++I 
Sbjct: 120 KVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIA----SWNTLI- 174

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
            S   ++  + K    ++  V  + N    SA++  Y++   +E A  ++++    +VV 
Sbjct: 175 -SGFAQNGQMQKAFDLFS--VMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVV 231

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
            T M+ G +K  + E A ++FQ M  +N+V+WN+MI GY +  R E+ + +F  M+   +
Sbjct: 232 ETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRV 291

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN  +L   ++  +N++AL +G+  H    K     D     SLIS Y KCG ++ +  
Sbjct: 292 RPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWK 351

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F ++  ++++TWNA+I GYAQ+G G +A+  F++MR   ++P+ +T + ++ ACNH G 
Sbjct: 352 LFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGF 411

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V+ G  YF   K E     KP HY C++DLL R+GR  EA   + ++PF P    +  LL
Sbjct: 412 VDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLL 471

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C+IH N++L EFAAR +L LDP   + YV L+N  +   KWD V+ +R+ MKE  + +
Sbjct: 472 GACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVK 531

Query: 477 VPGCSWIEIKSKVHVFVTGDRNH 499
           +PG SWIEIKS  H F + DR H
Sbjct: 532 IPGYSWIEIKSVTHEFRSSDRLH 554



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 144/332 (43%), Gaps = 51/332 (15%)

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE----------------- 167
           N+   LH     V   S+V   +  +  +++   +E A  VFE                 
Sbjct: 60  NVTPNLH-----VDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGY 114

Query: 168 --------DTH-------NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
                   + H        P+ VSY  M+   L+    + AL  F +MP +++ SWN +I
Sbjct: 115 TKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLI 174

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
            G++Q G+ ++A +LF  M  +    N  +    I        L   +  +    K +G 
Sbjct: 175 SGFAQNGQMQKAFDLFSVMPEK----NGVSWSAMISGYVEHGDLEAAEELY----KNVGM 226

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
             V V  ++++ Y K G +E +  +F ++  +N+VTWN++I GY +N R E+ ++ F+ M
Sbjct: 227 KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRS 390
             + +RPN ++L  +L  C++   +  G       +L     L  +  AC  ++ +  + 
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGR---QMHQLVSKSPLSKDTTACTSLISMYCKC 343

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           G    A +   ++P    I  W A++ G   H
Sbjct: 344 GDLDSAWKLFLEMPRKDVIT-WNAMISGYAQH 374



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 79/157 (50%), Gaps = 11/157 (7%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ-NGRGEEAIEFFERM 332
           DV   N  I+ + +   +E +  VF+K++ R  VTWN ++ GY +  G+ +EA E F+++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
                 P+ V+   +L     +  V+   ++F++  ++D        +  ++   +++G+
Sbjct: 132 P----EPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIA-----SWNTLISGFAQNGQ 182

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
            ++A +    +P   G+  W A++ G   H ++E  E
Sbjct: 183 MQKAFDLFSVMPEKNGVS-WSAMISGYVEHGDLEAAE 218



 Score = 42.0 bits (97), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 14/199 (7%)

Query: 37  QKLETPAIRTDSVSCGS------ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYE 90
           Q +    +  D+ +C S      +     S  ++F E+P  +V++   +I  +A+     
Sbjct: 319 QLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGR 378

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ-LHAWATKVGLQSNVFVGSAI 149
           +A++LF +M    ++P   TF +VI +      ++LG Q   +   + G+++     + +
Sbjct: 379 KALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCV 438

Query: 150 LDLYIKLSSIEEATRVFED-THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           +DL  +   ++EA  + ++    P+   Y T    LL   R    L L  E   RN+++ 
Sbjct: 439 IDLLGRAGRLDEAVSLIKEMPFTPHAAIYGT----LLGACRIHKNLDL-AEFAARNLLNL 493

Query: 209 NAMIG-GYSQTGRNEEAVN 226
           +     GY Q      A N
Sbjct: 494 DPTSATGYVQLANIYAATN 512


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 160/450 (35%), Positives = 254/450 (56%), Gaps = 64/450 (14%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S         F+E+P  +V+  + +I R+A+    +EA+ +F +M    + P++FTF 
Sbjct: 286 TKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFA 345

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +   +E LNLG Q+H    K+GL S+VFV +A++D+Y K                 
Sbjct: 346 SVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAK----------------- 388

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRN-VVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                    CG     R E+++ LF E PHRN V  WN +I G+ Q G  E+A+ LF+ M
Sbjct: 389 ---------CG-----RMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNM 434

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           L   +     T   A+ A A++AAL  G   H+  VK     D+ V N+LI  YAKCGS+
Sbjct: 435 LEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSI 494

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +D+ LVFD + +++ V+WNA+I GY+ +G                             AC
Sbjct: 495 KDARLVFDLMNKQDEVSWNAMISGYSMHG----------------------------LAC 526

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
            + GL+++G +YF+ + ++D G ++P  EHY CMV LL R G   +A + + ++PF P +
Sbjct: 527 ANAGLLDQGQAYFT-SMIQDHG-IEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSV 584

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W+ALLG C IH+++ELG  +A+ +L ++P+D +++V+LSN  + A +WDNV+++R+ M
Sbjct: 585 MVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNM 644

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           K KG+ + PG SWIE +  VH F  GD +H
Sbjct: 645 KRKGVKKEPGLSWIESQGTVHSFTVGDTSH 674



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 179/363 (49%), Gaps = 38/363 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +   ++VS T ++  FA+   ++EA+ LFS+M ++  +P+ FTF SV  +   LE
Sbjct: 195 EVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLE 254

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             ++GK +H  A K   + +++VG A+LDLY K   I++A   FE+    +V+ ++ M  
Sbjct: 255 AFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFM-- 312

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                        I  Y+Q+ +++EAV +F +M +  ++PN  T
Sbjct: 313 -----------------------------IARYAQSDQSKEAVEMFFQMRQALVLPNQFT 343

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A A +  L +G   H   +K     DVFV N+L+  YAKCG ME+S+ +F +  
Sbjct: 344 FASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESP 403

Query: 303 ERNIVT-WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            RN VT WN VI G+ Q G GE+A+  F  M    ++   VT    L AC     +E G 
Sbjct: 404 HRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGL 463

Query: 362 SYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
              S       D  ++       ++D+ ++ G  K+A+  ++DL        W A++ G 
Sbjct: 464 QIHSLTVKTTFDKDIVVTN---ALIDMYAKCGSIKDAR-LVFDLMNKQDEVSWNAMISGY 519

Query: 420 QIH 422
            +H
Sbjct: 520 SMH 522



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 188/388 (48%), Gaps = 41/388 (10%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +SD      ++FDE+P+ N +S  T+I  +A+   + EAI LF R+       + F F +
Sbjct: 85  KSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTT 144

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++    +++   LG  +HA   K+G +SN FVG+A++D Y                    
Sbjct: 145 ILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAY-------------------- 184

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                  +CG     R + A ++F  + ++++VSW  M+  +++    +EA+ LF +M  
Sbjct: 185 ------SVCG-----RVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRM 233

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G  PN+ T      A   + A  +GKS H CA+K   +LD++VG +L+  Y K G ++D
Sbjct: 234 VGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDD 293

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-- 351
           +   F+++ +++++ W+ +I  YAQ+ + +EA+E F +MR   + PN  T   +L AC  
Sbjct: 294 ARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACAT 353

Query: 352 -NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
                L  + + +  +  L     +       ++D+ ++ GR + +     + P    + 
Sbjct: 354 MEGLNLGNQIHCHVIKIGLHSDVFVSN----ALMDVYAKCGRMENSMXLFAESPHRNDVT 409

Query: 411 FWKALLGGCQIHSNVELGEFAARRILAL 438
            W  ++ G   H  +  GE A R  L +
Sbjct: 410 PWNTVIVG---HVQLGDGEKALRLFLNM 434



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GK  H   +K  G LD+F  N L++ Y K   + D+  +FD++ ERN +++  +I GYA+
Sbjct: 57  GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAE 116

Query: 319 NGRGEEAIEFFERMRINGIRPNG---VTLLGLL 348
           + R  EAIE F R+   G   N     T+L LL
Sbjct: 117 SVRFLEAIELFVRLHREGHELNPFVFTTILKLL 149


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 166/519 (31%), Positives = 275/519 (52%), Gaps = 46/519 (8%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C  ++ L + ++ K+H L   + +E             I +  V+C  +          F
Sbjct: 144 CAIKACLDVLEIKKIHGLLFKFGLELDVF---------IGSALVNCYLKFGLMEHAQVAF 194

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           +E+P  +VV    ++  +A+   +E  +  F RM   ++ PS FT   V+     + DLN
Sbjct: 195 EELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLN 254

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
            G+ +H +A K+G  S V V ++++D+Y K   IE                         
Sbjct: 255 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIE------------------------- 289

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                 DAL++F+ M  +++ SWN+++  + Q G ++  + L   ML  G+ P+  T+  
Sbjct: 290 ------DALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343

Query: 246 AIIAAANIAALGMGKSFHA-CAVKFLGKL-----DVFVGNSLISFYAKCGSMEDSLLVFD 299
            + A +++AAL  G+  H    V  LGK      DV + N++I  YAKCGSM D+ LVF+
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE 403

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           +++ +++ +WN +I GY  +G G EA+E F RM    ++P+ VT +G+L AC+H G V +
Sbjct: 404 RMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQ 463

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G ++  Q K +       EHY C++D+L R+G+  EA E    +P +     W+ALL  C
Sbjct: 464 GRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAAC 523

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H +  L E AA+R+  L+PE   SYV++SN     G+++ V  +R  M+++ + + PG
Sbjct: 524 RLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPG 583

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           CSWIE+K+ VHVFV+ DR H     IYA L S T ++RE
Sbjct: 584 CSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLRE 622



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 208/446 (46%), Gaps = 52/446 (11%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVF-DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97
           L +P   T  ++  S+ ++ +    +F D   ++NV +   II  F      EE    + 
Sbjct: 69  LNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQ 128

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
           +M    + P +FTF   I +   + ++   K++H    K GL+ +VF+GSA+++ Y+K  
Sbjct: 129 KMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFG 185

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
            +E A   FE                               E+P R+VV WNAM+ GY+Q
Sbjct: 186 LMEHAQVAFE-------------------------------ELPIRDVVLWNAMVNGYAQ 214

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
            G+ E  +  F  M  E +VP+  T+   +   A +  L  G+  H  A+K      V V
Sbjct: 215 IGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAV 274

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            NSLI  Y KC  +ED+L +F+ + E++I +WN+++  + Q G  +  +   +RM   GI
Sbjct: 275 SNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGI 334

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPG------MLKPEHYACMVDLLS 388
           +P+ VT+  +L AC+H   +  G   + Y   + L   G      +LK      ++D+ +
Sbjct: 335 QPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLK----NAVIDMYA 390

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSY 446
           + G  ++A   +++   +  +  W  ++ G  +H   N  L  F+    + L P++V ++
Sbjct: 391 KCGSMRDA-HLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEV-TF 448

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEK 472
           V + +A S AG      N   +MK K
Sbjct: 449 VGVLSACSHAGFVSQGRNFLVQMKSK 474



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 35/235 (14%)

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED-THNPN 173
           + +S   ++L+ GK++H++    G  ++    ++++++Y K + +  A  +F D TH  N
Sbjct: 44  LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEIN 103

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V ++  +I G +     E+  + +Q+M  RN                             
Sbjct: 104 VFAFNAIISGFITNGFPEEGFEFYQKM--RN----------------------------- 132

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG++P+  T PCAI A  ++  +   K  H    KF  +LDVF+G++L++ Y K G ME 
Sbjct: 133 EGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEH 189

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           + + F++L  R++V WNA++ GYAQ G+ E  +E F RM    + P+  T+ G+L
Sbjct: 190 AQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 171/509 (33%), Positives = 275/509 (54%), Gaps = 40/509 (7%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           SL +L +L + A    I+T   S   + T  I   S++  + S      H +FD++P  +
Sbjct: 32  SLRELKQLQAFA----IKTHLHSDLSVLTKFINFCSLNPTTTS--MQHAHHLFDQIPQPD 85

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
           +V   T+   +A+      A  LF+++L   + P ++TF S++ +  + + L  G+QLH 
Sbjct: 86  IVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHC 145

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
            A K+GL  NV+V   ++++Y   + ++ A RVF+    P VV+Y               
Sbjct: 146 LAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTY--------------- 190

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
                           NAMI GY++  R  EA++LF E+    L P   T+   + + A 
Sbjct: 191 ----------------NAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCAL 234

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           + AL +GK  H    K      V V  +LI  YAKCGS++D++ VF+ +  R+   W+A+
Sbjct: 235 LGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAM 294

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           I  YA +G G +A+  F+ MR  G  P+ +T LGLL+AC+HTGLVE+G+ YF   + +  
Sbjct: 295 IMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYG 354

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
            +   +HY CMVDLL R+GR +EA EF+  LP  P    W+ LL  C  H NVELG+   
Sbjct: 355 VIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVI 414

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVF 492
            +I  LD      Y++LSN  + AG+W++V+ +R+ M E+G+ ++PGCS +E+ + VH F
Sbjct: 415 EQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEF 474

Query: 493 VTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
            +GD  H ++ +++  L    E ++E +L
Sbjct: 475 FSGDGVHSVSTKLHQAL---DELVKELKL 500


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 168/464 (36%), Positives = 256/464 (55%), Gaps = 38/464 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHY-----EEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           ++F  +PD NVV    +I  F +          EA+YLF  M    ++PSEFTF S++ +
Sbjct: 279 KIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKA 338

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            + +E    GKQ+HA   K  LQS+ F+G+A+++LY    SIE                 
Sbjct: 339 CSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE----------------- 381

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                         D LK F   P  +VVSW ++I G+ Q G+ E  + LF E+L  G  
Sbjct: 382 --------------DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRK 427

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLL 296
           P+  T+   + A AN+AA+  G+  HA A+K  +G   + + NS I  YAKCG ++ + +
Sbjct: 428 PDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTI-IQNSQICMYAKCGDIDSANM 486

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F +    +IV+W+ +I   AQ+G  +EA++ FE M+ +GI PN +T LG+L AC+H GL
Sbjct: 487 TFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGL 546

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VE+G  YF   K +       +H AC+VDLL R+GR  EA+ F+ D  F+     W++LL
Sbjct: 547 VEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLL 606

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C++H   + G+  A R++ L+PE  +SYV+L N  + AG     + IR  MK++G+ +
Sbjct: 607 SACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKK 666

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
            PG SWIE+ + VH FV GDR+H  +  IY  L    E+I++ +
Sbjct: 667 EPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLD 710



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 198/437 (45%), Gaps = 66/437 (15%)

Query: 5   LCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSV-----SCGSESDKFS 59
           L +C  +L L     +H+L           +V  L  P + T+S+      CG    +  
Sbjct: 127 LSVCGRTLDLRLGRLIHALI----------TVSGLGGPVLLTNSLIDMYCKCG----RID 172

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-- 117
               VF+   +L+ VS  ++I  + +    +E + L  +ML   +  + +  GS + +  
Sbjct: 173 WARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACG 232

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           S     +  GK LH  A K+GL  +V VG+A+LD Y K+  +E+AT++F+   +PNVV Y
Sbjct: 233 SNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMY 292

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
             MI G L+ E   D                              EA+ LF EM   G+ 
Sbjct: 293 NAMIAGFLQMETMADEFA--------------------------NEAMYLFFEMQSRGMK 326

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T    + A + I A   GK  HA   K+  + D F+GN+L+  Y+  GS+ED L  
Sbjct: 327 PSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKC 386

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F    + ++V+W ++I G+ QNG+ E  +  F  +  +G +P+  T+  +L AC +   V
Sbjct: 387 FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAV 446

Query: 358 EKG---YSYFSQAKLEDPGMLKPEH---YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           + G   ++Y  +  + +  +++      YA   D+ S +  FKE K        +P I  
Sbjct: 447 KSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK--------NPDIVS 498

Query: 412 WKALLGGCQIHSNVELG 428
           W  +     I SN + G
Sbjct: 499 WSVM-----ISSNAQHG 510



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 193/411 (46%), Gaps = 56/411 (13%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD +P  NVVS  ++I  + +   Y E + LF    + ++R  +FTF + +       
Sbjct: 75  KLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTL 134

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL LG+ +HA  T  GL   V + ++++D+Y K   I+ A  VFE               
Sbjct: 135 DLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESA------------- 181

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                    D L         + VSWN++I GY + G N+E + L ++MLR GL  N   
Sbjct: 182 ---------DEL---------DSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYA 223

Query: 243 LPCAIIAAAN--IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           L  A+ A  +   +++  GK  H CAVK    LDV VG +L+  YAK G +ED+  +F  
Sbjct: 224 LGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKL 283

Query: 301 LTERNIVTWNAVICGYAQ-----NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           + + N+V +NA+I G+ Q     +    EA+  F  M+  G++P+  T   +L AC+   
Sbjct: 284 MPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIE 343

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
             E G    +Q    +   L+ + +    +V+L S SG  ++  +  +  P    +  W 
Sbjct: 344 AFECGKQIHAQIFKYN---LQSDEFIGNALVELYSLSGSIEDGLKCFHSTP-KLDVVSWT 399

Query: 414 ALLGGCQIHSNVELGEFAARRIL-------ALDPEDVSSYVMLSNALSVAG 457
           +L+ G     +V+ G+F     L          P++ +  +MLS   ++A 
Sbjct: 400 SLIVG-----HVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAA 445



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A KLF  MP RNVVSWN++I GY+Q G   E +NLF E     L  +  T   A+     
Sbjct: 73  AKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGR 132

Query: 253 IAALGMGKSFHA-CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
              L +G+  HA   V  LG   V + NSLI  Y KCG ++ + LVF+   E + V+WN+
Sbjct: 133 TLDLRLGRLIHALITVSGLGG-PVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNS 191

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC--NHTGLVEKGYSYFSQA-K 368
           +I GY + G  +E +    +M  +G+  N   L   L AC  N +  +E G      A K
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK 251

Query: 369 LEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           L   G+ L       ++D  ++ G  ++A +    +P DP +  + A++ G
Sbjct: 252 L---GLDLDVVVGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIAG 298



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 9/197 (4%)

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           GL  +  T    +  +    +L  GK  H   +K   K  +F+ N+L+  Y KCG  + +
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             +FD++ +RN+V+WN++I GY Q G   E +  F+  R++ +R +  T    L  C  T
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 355 GLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
             +  G   ++  + + L  P +L       ++D+  + GR   A+  +++   +     
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNS----LIDMYCKCGRIDWAR-LVFESADELDSVS 188

Query: 412 WKALLGG-CQIHSNVEL 427
           W +L+ G  +I SN E+
Sbjct: 189 WNSLIAGYVRIGSNDEM 205


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 161/455 (35%), Positives = 255/455 (56%), Gaps = 11/455 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-----LLNIRPSEFTFGSVIPSS 118
           +F  V D N      +I  +     Y  AI ++ +ML        I P +FTF  V+ S 
Sbjct: 68  LFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSC 127

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L   +LGKQ+H    K G +SN  V ++++++Y+K  S+++A RVFE+    + VS+ 
Sbjct: 128 AGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWN 187

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           T+I G ++  +   A  +F+EM  + + SW A++ GY++ G   +A+  F  M   G+ P
Sbjct: 188 TLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEP 247

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  +L   +   A + AL +GK  H  A K     ++ V N+LI  YAKCGS++    +F
Sbjct: 248 DEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLF 307

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D++ ER++++W+ +I G A +GR  EAIE F+ M+   I P+ +T +GLL AC H GL+ 
Sbjct: 308 DQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLN 367

Query: 359 KGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           +G  YF   K +   +PG+   EHY C+V+LL  SGR  +A E +  +P  P    W +L
Sbjct: 368 EGLRYFESMKRDYNIEPGV---EHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSL 424

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C+ H N+++   A   +L L+P D  +YV+LSN  +  GKWD VS +R+ M+ K M 
Sbjct: 425 LSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMK 484

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           + PGCS IE+ + V  F +GD +   +  I  VL+
Sbjct: 485 KTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLK 519



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 176/453 (38%), Gaps = 119/453 (26%)

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
           ++  L IR  E  F  ++     + +L   K++HA   K  L  + F+ + ++D+     
Sbjct: 4   KLRALKIREMEDMFVPILKDCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVDVCNHYG 60

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
             E A  +F+   +PN   Y                               NAMI  Y  
Sbjct: 61  ETEYANLLFKGVADPNAFLY-------------------------------NAMIRAYKH 89

Query: 218 TGRNEEAVNLFIEML-----REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
                 A+ ++ +ML        + P+  T P  + + A +    +GK  H    KF  K
Sbjct: 90  NKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQK 149

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN---------------------- 310
            +  V NSL+  Y KC S++D+  VF+++TER+ V+WN                      
Sbjct: 150 SNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEM 209

Query: 311 ---------AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE--- 358
                    A++ GYA+ G   +A+EFF RM++ GI P+ ++L+ +L  C   G +E   
Sbjct: 210 QDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGK 269

Query: 359 --------------------------------KGYSYFSQAKLEDPGMLKPEHYACMVDL 386
                                           +G   F Q K  D        ++ M+  
Sbjct: 270 WIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERD-----VISWSTMIVG 324

Query: 387 LSRSGRFKEAKEFLYDL---PFDPGIGFWKALLGGCQIHS---NVELGEF-AARRILALD 439
           L+  GR +EA E   ++     +P I  +  LL  C  H+   N  L  F + +R   ++
Sbjct: 325 LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACA-HAGLLNEGLRYFESMKRDYNIE 383

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           P  V  Y  L N L ++G+ D    + ++M  K
Sbjct: 384 P-GVEHYGCLVNLLGLSGRLDQALELVKKMPRK 415



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 35/216 (16%)

Query: 54  ESDKFSSVHQVFDEVP-------------------------------DLNVVSATTIIGR 82
           + D     H+VF+E+                                D  + S T I+  
Sbjct: 164 KCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSG 223

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142
           +A+   Y +A+  F RM ++ I P E +  SV+P    L  L LGK +H +A K G   N
Sbjct: 224 YARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRN 283

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
           + V +A++++Y K  SI++  R+F+     +V+S++TMI GL    R  +A++LFQEM  
Sbjct: 284 ICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQK 343

Query: 203 R----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                +++++  ++   +  G   E +  F  M R+
Sbjct: 344 AKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRD 379


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 162/450 (36%), Positives = 254/450 (56%), Gaps = 35/450 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL--LNIRPSEFTFGSVIPSSTA 120
           +VFD +P  +++    +I   +    + E + LF RM    L++  +  T  SV+ S+ +
Sbjct: 362 KVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTAS 421

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
            E +   +Q+HA A K+GL S+  V + ++D Y K                         
Sbjct: 422 SEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWK------------------------- 456

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
            CG L     + A+K+F+E    +++S   M+   SQ    E+A+ LF++MLR+GL P+ 
Sbjct: 457 -CGQL-----DYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDS 510

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
             L   + A  +++A   GK  HA  +K     DVF GN+L+  YAKCGS+ED+ + F  
Sbjct: 511 FVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSG 570

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           L ER IV+W+A+I G AQ+G G+ A++ F RM   G+ PN +TL  +L ACNH GLV+  
Sbjct: 571 LPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDA 630

Query: 361 YSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
             YF   K E  G+ +  EHYACM+D+L R+G+ ++A E + ++PF      W ALLG  
Sbjct: 631 KKYFESMK-ETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGAS 689

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H + ELG  AA ++  L+PE   ++V+L+N  + AG WD ++ +R+ MK+  + + P 
Sbjct: 690 RVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPA 749

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            SW+EIK KVH F+ GD++H M  +IY  L
Sbjct: 750 MSWVEIKDKVHTFIVGDKSHPMTRDIYGKL 779



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 136/279 (48%), Gaps = 35/279 (12%)

Query: 63  QVFDEVPDL----NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++FDE   +    N VS  T+I  + K     +AI +F  M+    RP+EF F  V+ + 
Sbjct: 156 RMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNAC 215

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           T   DL  G+Q+H    + G + +VF  +A++D+Y KL  IE A  VFE           
Sbjct: 216 TGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFE----------- 264

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
                               +MP  +VVSWNA I G    G +  A+ L ++M   GLVP
Sbjct: 265 --------------------KMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVP 304

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           N  TL   + A A   A  +G+  H   VK +   D FV   L+  YAK G ++D+  VF
Sbjct: 305 NVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVF 364

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           D +  R+++ WNA+I G + +GR  E +  F RMR  G+
Sbjct: 365 DFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGL 403



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 167/365 (45%), Gaps = 38/365 (10%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           S+   VFDE+PD   VS ++++  ++      +A+  F  M    +  +EF    V+  +
Sbjct: 54  SAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCA 113

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
               D+  G Q+HA A    L  +VFV +A++ +Y     ++EA R+F++          
Sbjct: 114 P---DVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEY--------- 161

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
             + G                   RN VSWN MI  Y +  ++ +A+ +F EM+  G  P
Sbjct: 162 VGVGG------------------ERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERP 203

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           N     C + A      L  G+  H   V+   + DVF  N+L+  Y+K G +E +  VF
Sbjct: 204 NEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVF 263

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           +K+   ++V+WNA I G   +G    A+E   +M+ +G+ PN  TL  +L AC   G   
Sbjct: 264 EKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFN 323

Query: 359 KG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            G   + +  +A  +    +       +VD+ ++ G   +A++    +P    I  W AL
Sbjct: 324 LGRQIHGFMVKAVADFDEFVA----VGLVDMYAKHGFLDDARKVFDFMPRRDLI-LWNAL 378

Query: 416 LGGCQ 420
           + GC 
Sbjct: 379 ISGCS 383



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 36/66 (54%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N L++ Y++C     +  VFD++ +   V+W++++  Y+ NG   +A+  F  MR  G+ 
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVP 100

Query: 339 PNGVTL 344
            N   L
Sbjct: 101 CNEFAL 106


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 173/468 (36%), Positives = 259/468 (55%), Gaps = 39/468 (8%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++ ++  +  ++FD++   N++S TT+I  + +     EA+ LF  M  L  +P  F   
Sbjct: 298 TKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACT 357

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ S  + E L  G+Q+HA+  K  L+S+ FV + ++D+Y K                 
Sbjct: 358 SVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAK----------------- 400

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                      LL      DA K+F  M  +NV+S+NAMI GYS   +  EA+ LF EM 
Sbjct: 401 ---------SNLLI-----DAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR 446

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
                PN  T    I AA+N+A+L  G+ FH   VK       FV N+L+  YAKCGS+E
Sbjct: 447 VRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIE 506

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++  +F+    R++V WN++I  +AQ+G  EEA+  F  M   GI+PN VT + +L AC+
Sbjct: 507 EARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS 566

Query: 353 HTGLVEKGYSYFSQAKLEDPGM-LKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H G VE G ++F+      PG  +KP  EHYAC+V LL RSG+  EAKEF+  +P +P  
Sbjct: 567 HAGRVEDGLNHFNSM----PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAA 622

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W++LL  C+I  NVELG++AA   ++ DP+D  SY++LSN  +  G W +V  +R  M
Sbjct: 623 IVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRM 682

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
               + + PG SWIE+ +KV+VF+  D  H   D I +VL    + I+
Sbjct: 683 DSSEVVKEPGRSWIEVNNKVNVFIARDTTHREAD-IGSVLDILIQHIK 729



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 204/410 (49%), Gaps = 42/410 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTF 111
           S+SD+  +   VFD++P  N+++ ++++  +++Q + EEA+ +F  +   +   P+EF  
Sbjct: 95  SKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVL 154

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            SVI + T L  +  G QLH +  + G   +V+VG++++D Y K  +IEEA  VF+    
Sbjct: 155 ASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFD---- 210

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                                      ++  +  V+W  +I GY++ GR+  ++ LF +M
Sbjct: 211 ---------------------------QLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQM 243

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
               +VP+   +   + A + +  L  GK  HA  ++   ++DV V N LI FY KC  +
Sbjct: 244 RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRV 303

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +    +FD++  +NI++W  +I GY QN    EA++ F  M   G +P+G     +L +C
Sbjct: 304 KAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 363

Query: 352 NHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
                +E+G   ++Y  +A LE    +K      ++D+ ++S    +AK+ ++D+  +  
Sbjct: 364 GSREALEQGRQVHAYTIKANLESDEFVKN----GLIDMYAKSNLLIDAKK-VFDVMAEQN 418

Query: 409 IGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVA 456
           +  + A++ G      +   L  F   R+    P + +   +++ A ++A
Sbjct: 419 VISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLA 468



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 193/401 (48%), Gaps = 38/401 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD++ +   V+ TTII  + K      ++ LF++M   N+ P  +   SV+ + + LE 
Sbjct: 208 VFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 267

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+HA+  + G + +V V + ++D Y K + ++   ++F+     N++S+TTMI G
Sbjct: 268 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 327

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            ++                 N   W              EA+ LF EM R G  P+    
Sbjct: 328 YMQ-----------------NSFDW--------------EAMKLFGEMNRLGWKPDGFAC 356

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + +  +  AL  G+  HA  +K   + D FV N LI  YAK   + D+  VFD + E
Sbjct: 357 TSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE 416

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +N++++NA+I GY+   +  EA+E F  MR+   +PN  T   L+ A ++   +  G  +
Sbjct: 417 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQF 476

Query: 364 FSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            +Q  L   G+   P     +VD+ ++ G  +EA++ +++      +  W +++     H
Sbjct: 477 HNQ--LVKMGLDFCPFVTNALVDMYAKCGSIEEARK-MFNSSIWRDVVCWNSMISTHAQH 533

Query: 423 SNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
              E  LG F       + P  V ++V + +A S AG+ ++
Sbjct: 534 GEAEEALGMFREMMKEGIQPNYV-TFVAVLSACSHAGRVED 573



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 153/317 (48%), Gaps = 34/317 (10%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           N+RP    F +++  S +   +   K +H      GLQS+ F+ + +++           
Sbjct: 44  NLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILIN----------- 92

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                             +C   K +R ++A  +F +MPH+N+++W++M+  YSQ G +E
Sbjct: 93  ------------------VCS--KSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSE 132

Query: 223 EAVNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           EA+ +F+++ R+ G  PN   L   I A   +  +  G   H   V+     DV+VG SL
Sbjct: 133 EALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSL 192

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I FY+K G++E++ LVFD+L+E+  VTW  +I GY + GR   ++E F +MR   + P+ 
Sbjct: 193 IDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDR 252

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
             +  +L AC+    +E G    +   L     +       ++D  ++  R K  ++ L+
Sbjct: 253 YVVSSVLSACSMLEFLEGGKQIHAYV-LRRGTEMDVSVVNVLIDFYTKCNRVKAGRK-LF 310

Query: 402 DLPFDPGIGFWKALLGG 418
           D      I  W  ++ G
Sbjct: 311 DQMVVKNIISWTTMISG 327



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 167/399 (41%), Gaps = 84/399 (21%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +L  C S  +L +  ++H+        T KA+++  E   ++   +   ++S+      +
Sbjct: 359 VLTSCGSREALEQGRQVHAY-------TIKANLESDEF--VKNGLIDMYAKSNLLIDAKK 409

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD + + NV+S   +I  ++ Q    EA+ LF  M +   +P+EFTF ++I +++ L  
Sbjct: 410 VFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLAS 469

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G+Q H    K+GL    FV +A++D+Y K  SIEEA ++F  +   +VV + +MI  
Sbjct: 470 LRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMIST 529

Query: 184 LLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             +    E+AL +F+EM       N V++ A++   S  GR E+ +N F  M   G+ P 
Sbjct: 530 HAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKP- 588

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                              G   +AC V  LG+                           
Sbjct: 589 -------------------GTEHYACVVSLLGR--------------------------- 602

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
                              +G+  EA EF E+M    I P  +    LL AC   G VE 
Sbjct: 603 -------------------SGKLFEAKEFIEKM---PIEPAAIVWRSLLSACRIAGNVEL 640

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           G      A   DP       Y  + ++ +  G + + K+
Sbjct: 641 GKYAAEMAISTDPK--DSGSYILLSNIFASKGMWADVKK 677


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 173/483 (35%), Positives = 269/483 (55%), Gaps = 49/483 (10%)

Query: 53  SESDKFSSVHQVFDEVPD----LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           S+  +F    ++F+++ +    ++VV+ +  I  +A++    EA+ +  +ML   I+P+E
Sbjct: 306 SQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNE 365

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATK--VGLQSNV-----FVGSAILDLYIKLSSIEE 161
            T  SV+    ++  L  GK++H +A K  + L+ N       V + ++D+Y K   ++ 
Sbjct: 366 VTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDT 425

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           A  +F D+ +P                              R+VV+W  MIGGYSQ G  
Sbjct: 426 ARAMF-DSLSPK----------------------------ERDVVTWTVMIGGYSQHGDA 456

Query: 222 EEAVNLFIEMLREGLV--PNHSTLPCAIIAAANIAALGMGKSFHACAVKFL-GKLDVFVG 278
            +A+ L  EM  E     PN  T+ CA++A A++AAL +GK  HA A++     + +FV 
Sbjct: 457 NKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS 516

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N LI  YAKCGS+ D+ LVFD +  +N VTW +++ GY  +G GEEA+  F+ MR  G +
Sbjct: 517 NCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFK 576

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKE 395
            +GVTLL +L+AC+H+G++++G  YF++ K      PG   PEHYAC+VDLL R+GR   
Sbjct: 577 LDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPG---PEHYACLVDLLGRAGRLNA 633

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455
           A   + ++P +P    W A L  C+IH  VELGE+AA +I  L      SY +LSN  + 
Sbjct: 634 ALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYAN 693

Query: 456 AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
           AG+W +V+ IR  M+ KG+ + PGCSW+E       F  GD+ H    EIY VL    ++
Sbjct: 694 AGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQR 753

Query: 516 IRE 518
           I++
Sbjct: 754 IKD 756



 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/436 (31%), Positives = 215/436 (49%), Gaps = 20/436 (4%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEFTF 111
           S     S   +VFDE+   +VVS  +II  +AK    + A+ +FSRM      RP   T 
Sbjct: 173 SRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITL 232

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            +V+P   +L   +LGKQLH +A    +  N+FVG+ ++D+Y K   ++EA  VF +   
Sbjct: 233 VNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSV 292

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNL 227
            +VVS+  M+ G  +  RFEDA++LF++M       +VV+W+A I GY+Q G   EA+ +
Sbjct: 293 KDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGV 352

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-------DVFVGNS 280
             +ML  G+ PN  TL   +   A++ AL  GK  H  A+K+   L       +  V N 
Sbjct: 353 CRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQ 412

Query: 281 LISFYAKCGSMEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERM--RING 336
           LI  YAKC  ++ +  +FD L+  ER++VTW  +I GY+Q+G   +A+E    M      
Sbjct: 413 LIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ 472

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
            RPN  T+   L AC     +  G    + A       +      C++D+ ++ G   +A
Sbjct: 473 TRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDA 532

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALS 454
           +  ++D         W +L+ G  +H   E  LG F   R +    + V+  V+L  A S
Sbjct: 533 R-LVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLY-ACS 590

Query: 455 VAGKWDNVSNIRREMK 470
            +G  D        MK
Sbjct: 591 HSGMIDQGMEYFNRMK 606



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 146/295 (49%), Gaps = 37/295 (12%)

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           D  V    ++I  +       + +YLF  M  L+  P  +TF  V  +   +  +  G+ 
Sbjct: 89  DAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGES 148

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
            HA +   G  SNVFVG+A++ +Y +  S+ +A +VF++    +VVS             
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVS------------- 195

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAII 248
                             WN++I  Y++ G+ + A+ +F  M  E G  P++ TL   + 
Sbjct: 196 ------------------WNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLP 237

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
             A++    +GK  H  AV      ++FVGN L+  YAKCG M+++  VF  ++ +++V+
Sbjct: 238 PCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS 297

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           WNA++ GY+Q GR E+A+  FE+M+   I+ + VT     W+   +G  ++G  Y
Sbjct: 298 WNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT-----WSAAISGYAQRGLGY 347


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 258/457 (56%), Gaps = 34/457 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL--NIRPSEFTFGSVIPSSTAL 121
           +FD++P+ +  S T +I  + +     EA+ LF RM+    N + ++FT  S + ++ A+
Sbjct: 158 LFDKMPERDNFSWTAMISGYVRHDRPNEALELF-RMMKRSDNSKSNKFTVSSALAAAAAV 216

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L +GK++H +  + GL S+  V SA+ D+Y K  SIEEA  +F+              
Sbjct: 217 PCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFD-------------- 262

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                            +M  R++V+W AMI  Y Q GR +E  +LF ++LR G+ PN  
Sbjct: 263 -----------------KMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEF 305

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A AN  +  +GK  H    +       F  ++L+  Y+KCG+M  +  VF + 
Sbjct: 306 TFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKET 365

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            + ++ +W ++I GYAQNG+ +EAI +FE +  +G +P+ +T +G+L AC H GLV+KG 
Sbjct: 366 PQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGL 425

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            YF   K +       +HYAC++DLL+RSG+F EA+  +  +   P    W +LLGGC+I
Sbjct: 426 DYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRI 485

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N++L + AA  +  ++PE+ ++YV L+N  + AG W  V+ IR+ M ++G+ + PG S
Sbjct: 486 HGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLS 545

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           WI IK  VHVF+ GD +H  + EI   L   +++++E
Sbjct: 546 WIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKE 582



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 180/355 (50%), Gaps = 18/355 (5%)

Query: 77  TTIIGRFAKQHHYEEAIYLFSRM--------LLLNI-RPSEFTFGSVIPSSTALEDLNLG 127
           TT++        ++EAI++  +         +L  I +PS   + ++I S      L  G
Sbjct: 30  TTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQG 89

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K++H      G    +F+ + +L++Y K  S+ ++ ++F++    ++ S+  +I G  K 
Sbjct: 90  KKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKM 149

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCA 246
              ++A  LF +MP R+  SW AMI GY +  R  EA+ LF  M R +    N  T+  A
Sbjct: 150 GLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSA 209

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + AAA +  L +GK  H   ++     D  V ++L   Y KCGS+E++  +FDK+ +R+I
Sbjct: 210 LAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDI 269

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-NHTG--LVEKGYSY 363
           VTW A+I  Y Q+GR +E  + F  +  +GIRPN  T  G+L AC N T   L +K + Y
Sbjct: 270 VTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGY 329

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            ++    DP        + +V + S+ G    A+    + P  P +  W +L+ G
Sbjct: 330 MTRVGF-DPFSFAA---SALVHMYSKCGNMVSAERVFKETP-QPDLFSWTSLIAG 379


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 251/448 (56%), Gaps = 33/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +   +++    +I   +    ++EA+ LF  +    +  +  T  +V+ S+ +LE
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             +  +Q+HA A K+G   +  V + ++D Y K S + +A RVFE               
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFE--------------- 463

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                           E    ++++  +MI   SQ    E A+ LF+EMLR+GL P+   
Sbjct: 464 ----------------ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 507

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+++A   GK  HA  +K     D F GN+L+  YAKCGS+ED+ L F  L 
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP 567

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER +V+W+A+I G AQ+G G+ A+E F RM   GI PN +T+  +L ACNH GLV++   
Sbjct: 568 ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKR 627

Query: 363 YFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF+  K E  G+ +  EHY+CM+DLL R+G+  +A E +  +PF      W ALLG  ++
Sbjct: 628 YFNSMK-EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRV 686

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + ELG+ AA ++  L+PE   ++V+L+N  + AG W+ V+ +R+ MK+  + + P  S
Sbjct: 687 HKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMS 746

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           WIE+K KVH F+ GD++H M  EIYA L
Sbjct: 747 WIEVKDKVHTFIVGDKSHPMTKEIYAKL 774



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 143/287 (49%), Gaps = 32/287 (11%)

Query: 63  QVFDEV-PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VF+E   + N VS   ++  + K     +AI +F  M+   I+P+EF F  V+ + T  
Sbjct: 156 RVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            ++  G+Q+HA   ++G   +VF  +A++D+Y+K+  ++ A+ +FE              
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFE-------------- 261

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                            +MP  +VVSWNA+I G    G +  A+ L ++M   GLVPN  
Sbjct: 262 -----------------KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVF 304

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   + A +   A  +G+  H   +K     D ++G  L+  YAK   ++D+  VFD +
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             R+++  NA+I G +  GR +EA+  F  +R  G+  N  TL  +L
Sbjct: 365 FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 187/410 (45%), Gaps = 36/410 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++PD +VVS   +I       H   AI L  +M    + P+ FT  S++ + +    
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +LG+Q+H +  K    S+ ++G  ++D+Y K                            
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAK---------------------------- 350

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                  +DA K+F  M HR+++  NA+I G S  GR++EA++LF E+ +EGL  N +TL
Sbjct: 351 ---NHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTL 407

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + A++ A    +  HA AVK     D  V N LI  Y KC  + D+  VF++ + 
Sbjct: 408 AAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSS 467

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            +I+   ++I   +Q   GE AI+ F  M   G+ P+   L  LL AC      E+G   
Sbjct: 468 GDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQV 527

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            +   ++   M        +V   ++ G  ++A+     LP + G+  W A++GG   H 
Sbjct: 528 HAHL-IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHG 585

Query: 424 NVELG-EFAARRI-LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           + +   E   R +   ++P  ++   +L  A + AG  D        MKE
Sbjct: 586 HGKRALELFGRMVDEGINPNHITMTSVLC-ACNHAGLVDEAKRYFNSMKE 634



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 175/380 (46%), Gaps = 41/380 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           + R   +S  S+  +     +VFDE+PD   VS ++++  ++       AI  F  M   
Sbjct: 38  SFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            +  +EF    V+     + D  LG Q+HA A   G  S+VFV +A++ +Y     +++A
Sbjct: 98  GVCCNEFALPVVL---KCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDA 154

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            RVF +  +                               RN VSWN ++  Y +  +  
Sbjct: 155 RRVFNEADS------------------------------ERNAVSWNGLMSAYVKNDQCG 184

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A+ +F EM+  G+ P      C + A      +  G+  HA  V+     DVF  N+L+
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y K G ++ + ++F+K+ + ++V+WNA+I G   NG    AIE   +M+ +G+ PN  
Sbjct: 245 DMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVF 304

Query: 343 TLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           TL  +L AC+  G  + G   + +  +A  +    +       +VD+ +++    +A++ 
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIG----VGLVDMYAKNHFLDDARK- 359

Query: 400 LYDLPFDPGIGFWKALLGGC 419
           ++D  F   +    AL+ GC
Sbjct: 360 VFDWMFHRDLILCNALISGC 379



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A ++F E+P    VSW++++  YS  G    A+  F  M  EG+  N   LP  +    +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNA 311
                +G   HA A+      DVFV N+L++ Y   G M+D+  VF++  +ERN V+WN 
Sbjct: 116 AR---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           ++  Y +N +  +AI+ F  M  +GI+P       ++ AC  +  +E G      A +  
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV--HAMVVR 230

Query: 372 PGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVE 426
            G  K    A  +VD+  + GR   A      +P D  +  W AL+ GC +    H  +E
Sbjct: 231 MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIE 289

Query: 427 L 427
           L
Sbjct: 290 L 290



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 35/259 (13%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            S  ++VF+E    ++++ T++I   ++  H E AI LF  ML   + P  F   S++ +
Sbjct: 455 LSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             +L     GKQ+HA   K    S+ F G+A++  Y K  SIE+A   F       VVS+
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 574

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           + MI GL                               +Q G  + A+ LF  M+ EG+ 
Sbjct: 575 SAMIGGL-------------------------------AQHGHGKRALELFGRMVDEGIN 603

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN--SLISFYAKCGSMEDSL 295
           PNH T+  +++ A N A L      +  ++K +  +D    +   +I    + G ++D++
Sbjct: 604 PNHITMT-SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 296 LVFDKLT-ERNIVTWNAVI 313
            + + +  + N   W A++
Sbjct: 663 ELVNSMPFQANASIWGALL 681



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A   AL  G   HA  +K  G L  F  N LISFY+KC     +  VFD++ +   V+W+
Sbjct: 15  AAAQALLPGAHLHASLLKS-GSLASFR-NHLISFYSKCRRPCCARRVFDEIPDPCHVSWS 72

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           +++  Y+ NG    AI+ F  MR  G+  N   L
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFAL 106


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 168/464 (36%), Positives = 256/464 (55%), Gaps = 38/464 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAK-----QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           ++F  +PD NVV    +I  F +          EA+YLF  M    ++PSEFTF S++ +
Sbjct: 200 KIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKA 259

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            + +E    GKQ+HA   K  LQS+ F+G+A+++LY    SIE                 
Sbjct: 260 CSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIE----------------- 302

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                         D LK F   P  +VVSW ++I G+ Q G+ E  + LF E+L  G  
Sbjct: 303 --------------DGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRK 348

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLL 296
           P+  T+   + A AN+AA+  G+  HA A+K  +G   + + NS I  YAKCG ++ + +
Sbjct: 349 PDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTI-IQNSQICMYAKCGDIDSANM 407

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F +    +IV+W+ +I   AQ+G  +EA++ FE M+ +GI PN +T LG+L AC+H GL
Sbjct: 408 TFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGL 467

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           VE+G  YF   K +       +H AC+VDLL R+GR  EA+ F+ D  F+     W++LL
Sbjct: 468 VEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLL 527

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C++H   + G+  A R++ L+PE  +SYV+L N  + AG     + IR  MK++G+ +
Sbjct: 528 SACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKK 587

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
            PG SWIE+ + VH FV GDR+H  +  IY  L    E+I++ +
Sbjct: 588 EPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLD 631



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 195/431 (45%), Gaps = 61/431 (14%)

Query: 5   LCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSV-----SCGSESDKFS 59
           L +C  +L L     +H+L           +V  L  P + T+S+      CG    +  
Sbjct: 48  LSVCGRTLDLRLGRLIHALI----------TVSGLGGPVLLTNSLIDMYCKCG----RID 93

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-- 117
               VF+   +L+ VS  ++I  + +    +E + L  +ML   +  + +  GS + +  
Sbjct: 94  WARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACG 153

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           S     +  GK LH  A K+GL  +V VG+A+LD Y K+  +E+AT++F+   +PNVV Y
Sbjct: 154 SNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMY 213

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
             MI G L+ E   D                              EA+ LF EM   G+ 
Sbjct: 214 NAMIAGFLQMETMADEFA--------------------------NEAMYLFFEMQSRGMK 247

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T    + A + I A   GK  HA   K+  + D F+GN+L+  Y+  GS+ED L  
Sbjct: 248 PSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKC 307

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F    + ++V+W ++I G+ QNG+ E  +  F  +  +G +P+  T+  +L AC +   V
Sbjct: 308 FHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAV 367

Query: 358 EKG---YSYFSQAKLEDPGMLKPEH---YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           + G   ++Y  +  + +  +++      YA   D+ S +  FKE K        +P I  
Sbjct: 368 KSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK--------NPDIVS 419

Query: 412 WKALLGGCQIH 422
           W  ++     H
Sbjct: 420 WSVMISSNAQH 430



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 189/406 (46%), Gaps = 56/406 (13%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  NVVS  ++I  + +   Y E + LF    + ++R  +FTF + +       DL LG
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           + +HA  T  GL   V + ++++D+Y K   I+ A  VFE                    
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESA------------------ 102

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
               D L         + VSWN++I GY + G N+E + L ++MLR GL  N   L  A+
Sbjct: 103 ----DEL---------DSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSAL 149

Query: 248 IAAAN--IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            A  +   +++  GK  H CAVK    LDV VG +L+  YAK G +ED+  +F  + + N
Sbjct: 150 KACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPN 209

Query: 306 IVTWNAVICGYAQ-----NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +V +NA+I G+ Q     +    EA+  F  M+  G++P+  T   +L AC+     E G
Sbjct: 210 VVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECG 269

Query: 361 YSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               +Q    +   L+ + +    +V+L S SG  ++  +  +  P    +  W +L+ G
Sbjct: 270 KQIHAQIFKYN---LQSDEFIGNALVELYSLSGSIEDGLKCFHSTP-KLDVVSWTSLIVG 325

Query: 419 CQIHSNVELGEFAARRIL-------ALDPEDVSSYVMLSNALSVAG 457
                +V+ G+F     L          P++ +  +MLS   ++A 
Sbjct: 326 -----HVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAA 366


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 262/467 (56%), Gaps = 32/467 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+     S   VF E+ D +VVS T++I  +A++    EA+ LF  M    I P  +T  
Sbjct: 191 SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVT 250

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +V+        L+ GK++H W  +  L  ++FV +A++D+Y K  S++EA  VF      
Sbjct: 251 AVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF------ 304

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                     EM  ++++SWN +IGGYS+     EA++LF  +L
Sbjct: 305 -------------------------SEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 339

Query: 233 REG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            E    P+  T+ C + A A+++A   G+  H   ++     D  V NSL+  YAKCG++
Sbjct: 340 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 399

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             + ++FD +  +++V+W  +I GY  +G G+EAI  F +MR  GI  + ++ + LL+AC
Sbjct: 400 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 459

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H+GLV++G+ +F+  + E       EHYAC+VD+L+R+G   +A  F+ ++P  P    
Sbjct: 460 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATI 519

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ALL GC+IH +V+L E  A ++  L+PE+   YV+++N  + A KW+ V  +R+ + +
Sbjct: 520 WGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQ 579

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +G+ + PGCSWIEIK +V++FV GD ++   + I A LR    ++ E
Sbjct: 580 RGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 626



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 170/354 (48%), Gaps = 33/354 (9%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           FDEV     +    ++   AK   +  +I LF +M+   +    +TF  V  S ++L  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           + G+QLH +  K G      VG++++  Y                               
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFY------------------------------- 89

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           LK +R + A K+F EM  R+V+SWN++I GY   G  E+ +++F++ML  G+  + +T+ 
Sbjct: 90  LKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIV 149

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
                 A+   + +G++ H+  VK     +    N+L+  Y+KCG ++ +  VF ++++R
Sbjct: 150 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 209

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           ++V++ ++I GYA+ G   EA++ FE M   GI P+  T+  +L  C    L+++G    
Sbjct: 210 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 269

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              K  D G       A M D+ ++ G  +EA+    ++     I  W  ++GG
Sbjct: 270 EWIKENDLGFDIFVSNALM-DMYAKCGSMQEAELVFSEMRVKDIIS-WNTIIGG 321


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 263/491 (53%), Gaps = 31/491 (6%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     ++FD++PD NVV+ T +I  + K +  ++   LF  M    +  +  T   ++ 
Sbjct: 223 KIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLE 282

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR------------ 164
           +  + +    G Q+H     +G   + ++ ++I+ +Y +  SI+ A +            
Sbjct: 283 ACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVT 342

Query: 165 -------------------VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
                              +FE+    +VVS+TT+ICG     R ++ + LFQ MP ++ 
Sbjct: 343 WNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDA 402

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
           ++W A+I G       E A + FI+ML+  + PN  TL C + A A++A L  G   HA 
Sbjct: 403 IAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAI 462

Query: 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325
             K   + D+ + NSL+S Y+KCG+++D+L +F  +   N+V +N +I G AQNG G+EA
Sbjct: 463 VTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEA 522

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385
           +E F +M+ + + PN +T LG+L AC H GLVE+G  YF   +       +P+HYACMVD
Sbjct: 523 LEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVD 582

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445
           LL R+G F EA   +  +PFDP  G W A+LG    H  +++ E AA+ +  L+P   + 
Sbjct: 583 LLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATP 642

Query: 446 YVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           YV+LSN  S++G       IR   K +G+ + PGCSWI +K +VH+F  G ++     E+
Sbjct: 643 YVILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHLFHAGHQSIKNIKEM 702

Query: 506 YAVLRSCTEQI 516
             ++ +  E++
Sbjct: 703 TEIIYALAEEV 713



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 154/280 (55%), Gaps = 10/280 (3%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E+ + +   +VF+++PD NV S   +I  + +++  +EA  LFS M   N      ++ 
Sbjct: 97  AENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMPQRN----SVSYA 152

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           ++I         ++ ++LH     V + SNV +       Y K+  +E+A R+F+     
Sbjct: 153 TMITGFVHAGMFDMAEKLHR-EKPVIVSSNVLING-----YSKVGRVEDAVRIFDGMAEK 206

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +VVS+++MI GL +  +  +A KLF +MP RNVV+W  MI GY +    ++   LF+ M 
Sbjct: 207 DVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMR 266

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           REG+  N +TL   + A  +    G G   H   +     +D ++ NS+I+ Y++C S++
Sbjct: 267 REGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSID 326

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            +   FD + +++IVTWN++I GY Q+G  E+A+  FE M
Sbjct: 327 AAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENM 366



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 144/336 (42%), Gaps = 25/336 (7%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           N    +A+L  Y + S I +A  VF    +PNV SY  MI    +R   ++A +LF  MP
Sbjct: 85  NTVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMP 144

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            RN VS+  MI G+   G  + A  L            H   P  +I ++N+   G  K 
Sbjct: 145 QRNSVSYATMITGFVHAGMFDMAEKL------------HREKP--VIVSSNVLINGYSKV 190

Query: 262 FHA-CAVKF---LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
                AV+    + + DV   +S+IS   + G + ++  +FDK+ +RN+VTW  +I GY 
Sbjct: 191 GRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYM 250

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
           +    ++    F  MR  G+  N  TL  LL AC       +G        +   G    
Sbjct: 251 KMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQI--HGLVLSLGFDVD 308

Query: 378 EHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436
            + A  ++ + SR      A +  +DL     I  W +L+ G     N+E   F      
Sbjct: 309 AYLANSIITMYSRCYSIDAAAK-QFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFEN-- 365

Query: 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +  +DV S+  L    +  G+ D    + + M EK
Sbjct: 366 -MPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEK 400



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 15/180 (8%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           NS I+   + G ++++  +F+++  +N V+W A++  YA+N    +A E F ++      
Sbjct: 59  NSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIP----D 114

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           PN  +   ++ A +   +V++ +  FS     +        YA M+     +G F  A++
Sbjct: 115 PNVASYNAMITAYHRRNMVDEAFELFSSMPQRN-----SVSYATMITGFVHAGMFDMAEK 169

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
              + P    I     L+ G   +S V   E A R    +  +DV S+  + + L   GK
Sbjct: 170 LHREKPV---IVSSNVLING---YSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGK 223


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 169/508 (33%), Positives = 276/508 (54%), Gaps = 7/508 (1%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           SL   ++L SL     +  Q         P + +  V   ++   F     VF+ + D N
Sbjct: 276 SLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRN 335

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
            V+ T +I  F +   + E++ LF++M    +   +F   ++I    +  DL LG+QLH+
Sbjct: 336 NVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHS 395

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
              K G    V V ++++ +Y K  +++ A  +F   +  ++VS+T+MI    +      
Sbjct: 396 LCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAK 455

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAA 251
           A + F  M  +NV++WNAM+G Y Q G  E+ + ++  ML E  V P+  T        A
Sbjct: 456 AREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCA 515

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           ++ A  +G       VK    LD  V N++I+ Y+KCG + ++  VFD L  ++IV+WNA
Sbjct: 516 DLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNA 575

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE- 370
           +I GY+Q+G G++AIE F+ +   G +P+ ++ + +L  C+H+GLV++G SYF   K   
Sbjct: 576 MITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVH 635

Query: 371 --DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
              PG+   EH++CMVDLL R+G   EAK+ + ++P  P    W ALL  C+IH N EL 
Sbjct: 636 NISPGL---EHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELA 692

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
           E AA+ +  LD  D  SY++++   + AGK D+ + IR+ M++KG+ + PG SW+E+ +K
Sbjct: 693 ELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNK 752

Query: 489 VHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           VHVF   D +H     I   L    E+I
Sbjct: 753 VHVFKADDVSHPQVIAIRKKLDELMEKI 780



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 162/296 (54%), Gaps = 1/296 (0%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVI 115
           + S   ++F  +P  +V S  T++  + +   Y  ++  F  M    +  P+ FTF   +
Sbjct: 86  RLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAM 145

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            S  AL + +L  QL     K G Q +  V +A++D++++  +++ A+R+F     P + 
Sbjct: 146 KSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIF 205

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
              +M+ G +K    + AL+LF  MP R+VVSWN M+   SQ+GR  EA+++ ++M  +G
Sbjct: 206 CRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG 265

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           +  + +T   ++ A A +++L  GK  HA  ++ L  +D +V ++L+  YAKCG  +++ 
Sbjct: 266 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAK 325

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            VF+ L +RN V W  +I G+ Q+G   E++E F +MR   +  +   L  L+  C
Sbjct: 326 GVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGC 381



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 39/346 (11%)

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF-EDTHNPNVVSYTTMICGLLKRER 189
           H     VGL S VF+ + +L  Y+   ++ +A R+   D  +PNV+++  M+ G +K  R
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLPCAII 248
             DA++LF  MP R+V SWN ++ GY Q+ +   ++  F+ M R G   PN  T   A+ 
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME---------------- 292
           +   +    +         KF  + D  V  +L+  + +CG+++                
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 293 -DSLLV--------------FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            +S+LV              FD + ER++V+WN ++   +Q+GR  EA++    M+  G+
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           R +  T    L AC     +  G    +Q     P  + P   + +V+L ++ G FKEAK
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP-CIDPYVASALVELYAKCGCFKEAK 325

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHS----NVELGEFAARRILALD 439
                L     +  W  L+ G   H     +VEL       ++ LD
Sbjct: 326 GVFNSLHDRNNVA-WTVLIAGFLQHGCFTESVELFNQMRAELMTLD 370



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 96/209 (45%), Gaps = 20/209 (9%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +V   N +++ Y K G + D++ +F ++  R++ +WN ++ GY Q+ +   ++E F  M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 334 ING-IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-------PEHYACMVD 385
            +G   PN  T    + +C   G  E+  +      L+  GM++        +  A +VD
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALG--ERSLA------LQLLGMVQKFGSQDDSDVAAALVD 181

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445
           +  R G    A      +  +P I    ++L G      V+    A     ++   DV S
Sbjct: 182 MFVRCGTVDLASRLFVRIK-EPTIFCRNSMLVGYVKTYGVD---HALELFDSMPERDVVS 237

Query: 446 YVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           + M+ +ALS +G+     ++  +M+ KG+
Sbjct: 238 WNMMVSALSQSGRVREALDMVVDMQSKGV 266


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 251/448 (56%), Gaps = 33/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +   +++    +I   +    ++EA+ LF  +    +  +  T  +V+ S+ +LE
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             +  +Q+HA A K+G   +  V + ++D Y K S + +A RVFE               
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFE--------------- 463

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                           E    ++++  +MI   SQ    E A+ LF+EMLR+GL P+   
Sbjct: 464 ----------------ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 507

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+++A   GK  HA  +K     D F GN+L+  YAKCGS+ED+ L F  L 
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP 567

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER +V+W+A+I G AQ+G G+ A+E F RM   GI PN +T+  +L ACNH GLV++   
Sbjct: 568 ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKR 627

Query: 363 YFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF+  K E  G+ +  EHY+CM+DLL R+G+  +A E +  +PF      W ALLG  ++
Sbjct: 628 YFNSMK-EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRV 686

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + ELG+ AA ++  L+PE   ++V+L+N  + AG W+ V+ +R+ MK+  + + P  S
Sbjct: 687 HKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMS 746

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           WIE+K KVH F+ GD++H M  EIYA L
Sbjct: 747 WIEVKDKVHTFIVGDKSHPMTKEIYAKL 774



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 143/287 (49%), Gaps = 32/287 (11%)

Query: 63  QVFDEV-PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VF+E   + N VS   ++  + K     +AI +F  M+   I+P+EF F  V+ + T  
Sbjct: 156 RVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            ++  G+Q+HA   ++G   +VF  +A++D+Y+K+  ++ A+ +FE              
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFE-------------- 261

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                            +MP  +VVSWNA+I G    G +  A+ L ++M   GLVPN  
Sbjct: 262 -----------------KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVF 304

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   + A +   A  +G+  H   +K     D ++G  L+  YAK   ++D+  VFD +
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM 364

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             R+++  NA+I G +  GR +EA+  F  +R  G+  N  TL  +L
Sbjct: 365 FHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 187/410 (45%), Gaps = 36/410 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++PD +VVS   +I       H   AI L  +M    + P+ FT  S++ + +    
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA 318

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +LG+Q+H +  K    S+ ++G  ++D+Y K                            
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAK---------------------------- 350

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                  +DA K+F  M HR+++  NA+I G S  GR++EA++LF E+ +EGL  N +TL
Sbjct: 351 ---NHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTL 407

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + A++ A    +  HA AVK     D  V N LI  Y KC  + D+  VF++ + 
Sbjct: 408 AAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSS 467

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            +I+   ++I   +Q   GE AI+ F  M   G+ P+   L  LL AC      E+G   
Sbjct: 468 GDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQV 527

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            +   ++   M        +V   ++ G  ++A+     LP + G+  W A++GG   H 
Sbjct: 528 HAHL-IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHG 585

Query: 424 NVELG-EFAARRI-LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           + +   E   R +   ++P  ++   +L  A + AG  D        MKE
Sbjct: 586 HGKRALELFGRMVDEGINPNHITMTSVLC-ACNHAGLVDEAKRYFNSMKE 634



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 174/380 (45%), Gaps = 41/380 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           + R   +S  S+  +     + FDE+PD   VS ++++  ++       AI  F  M   
Sbjct: 38  SFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            +  +EF    V+     + D  LG Q+HA A   G  S+VFV +A++ +Y     +++A
Sbjct: 98  GVCCNEFALPVVL---KCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDA 154

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            RVF +  +                               RN VSWN ++  Y +  +  
Sbjct: 155 RRVFNEADS------------------------------ERNAVSWNGLMSAYVKNDQCG 184

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A+ +F EM+  G+ P      C + A      +  G+  HA  V+     DVF  N+L+
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALV 244

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y K G ++ + ++F+K+ + ++V+WNA+I G   NG    AIE   +M+ +G+ PN  
Sbjct: 245 DMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVF 304

Query: 343 TLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           TL  +L AC+  G  + G   + +  +A  +    +       +VD+ +++    +A++ 
Sbjct: 305 TLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIG----VGLVDMYAKNHFLDDARK- 359

Query: 400 LYDLPFDPGIGFWKALLGGC 419
           ++D  F   +    AL+ GC
Sbjct: 360 VFDWMFHRDLILCNALISGC 379



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 12/241 (4%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A + F E+P    VSW++++  YS  G    A+  F  M  EG+  N   LP  +    +
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNA 311
                +G   HA A+      DVFV N+L++ Y   G M+D+  VF++  +ERN V+WN 
Sbjct: 116 AR---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           ++  Y +N +  +AI+ F  M  +GI+P       ++ AC  +  +E G      A +  
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQV--HAMVVR 230

Query: 372 PGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVE 426
            G  K    A  +VD+  + GR   A      +P D  +  W AL+ GC +    H  +E
Sbjct: 231 MGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIE 289

Query: 427 L 427
           L
Sbjct: 290 L 290



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 35/259 (13%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            S  ++VF+E    ++++ T++I   ++  H E AI LF  ML   + P  F   S++ +
Sbjct: 455 LSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             +L     GKQ+HA   K    S+ F G+A++  Y K  SIE+A   F       VVS+
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 574

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           + MI GL                               +Q G  + A+ LF  M+ EG+ 
Sbjct: 575 SAMIGGL-------------------------------AQHGHGKRALELFGRMVDEGIN 603

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN--SLISFYAKCGSMEDSL 295
           PNH T+  +++ A N A L      +  ++K +  +D    +   +I    + G ++D++
Sbjct: 604 PNHITMT-SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 296 LVFDKLT-ERNIVTWNAVI 313
            + + +  + N   W A++
Sbjct: 663 ELVNSMPFQANASIWGALL 681



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A   AL  G   HA  +K  G L  F  N LISFY+KC     +   FD++ +   V+W+
Sbjct: 15  AAAQALLPGAHLHASLLKS-GSLASFR-NHLISFYSKCRRPCCARRFFDEIPDPCHVSWS 72

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           +++  Y+ NG    AI+ F  MR  G+  N   L
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFAL 106


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 257/455 (56%), Gaps = 32/455 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+ + D N+VS T++I  + +     EA+ +F +M   N++P      SV+ + T +ED
Sbjct: 226 VFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVED 285

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK +H    K+GL+          DL I L+++                      CG
Sbjct: 286 LEQGKSIHGCVVKMGLEFEP-------DLLISLTAMYAK-------------------CG 319

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +   R       F +M   NV+ WNAMI GY++ G   EAV LF EM+ + +  +  T+
Sbjct: 320 QVMVAR-----SFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITV 374

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
             AI+A A + +L + K       K   + DVFV  +LI  +AKCGS++ +  VFD+  +
Sbjct: 375 RSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLD 434

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++V W+A+I GY  +GRG++AI+ F  M+  G+ PN VT +GLL ACNH+GLVE+G+  
Sbjct: 435 KDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWEL 494

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F   K       + +HYAC+VDLL RSG   EA +F+  +P +PG+  W ALLG C+I+ 
Sbjct: 495 FHSMKYYGIEA-RHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYR 553

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           +V LGE+AA ++ +LDP +   YV LSN  + +  WD+V+ +R  M+EKG+++  G S I
Sbjct: 554 HVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLI 613

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           EI  K+  F  GD++H    EI+  L S   +++E
Sbjct: 614 EINGKLQAFRVGDKSHPRFKEIFEELESLERRLKE 648



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 214/461 (46%), Gaps = 44/461 (9%)

Query: 21  HSLAPNYL--IETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATT 78
           HS+   +L  I  Q      +E+  + T  V+      +     +VFDE P+ +V     
Sbjct: 80  HSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNA 139

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           II  ++  + + +AI ++SRM    + P  FT   V+ + + +  L +GK++H    ++G
Sbjct: 140 IIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLG 199

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
            +S+VFV + ++ LY K   +E+A  VFE                               
Sbjct: 200 FESDVFVQNGLVALYAKCGRVEQARIVFEG------------------------------ 229

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            +  RN+VSW +MI GY Q G   EA+ +F +M +  + P+   L   + A  ++  L  
Sbjct: 230 -LDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQ 288

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GKS H C VK   + +  +  SL + YAKCG +  +   FD++   N++ WNA+I GYA+
Sbjct: 289 GKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAK 348

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYSYFSQAKLEDPGML 375
           NG   EA+  F+ M    IR + +T+   + AC   G   L +    Y ++ +  +   +
Sbjct: 349 NGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFV 408

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAAR 433
                  ++D+ ++ G    A+E ++D   D  +  W A++ G  +H   +  +  F A 
Sbjct: 409 N----TALIDMFAKCGSVDLARE-VFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAM 463

Query: 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           +   + P DV ++V L  A + +G  +    +   MK  G+
Sbjct: 464 KQAGVCPNDV-TFVGLLTACNHSGLVEEGWELFHSMKYYGI 503


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 256/458 (55%), Gaps = 3/458 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P+ +VVS  T++  +A+  +  EA++ +       I+ +EF+F  ++ +      
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQ 194

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L L +Q H      G  SNV +  +I+D Y K   +E A R F++    ++  +TT+I G
Sbjct: 195 LQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISG 254

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K    E A KLF EMP +N VSW A+I GY + G    A++LF +M+  G+ P   T 
Sbjct: 255 YAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTF 314

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A+A+IA+L  GK  H   ++   + +  V +SLI  Y+K GS+E S  VF    +
Sbjct: 315 SSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDD 374

Query: 304 R-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           + + V WN +I   AQ+G G +A+   + M    ++PN  TL+ +L AC+H+GLVE+G  
Sbjct: 375 KHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLR 434

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F    ++   +   EHYAC++DLL R+G FKE    + ++PF+P    W A+LG C+IH
Sbjct: 435 WFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIH 494

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N ELG+ AA  ++ LDPE  + Y++LS+  +  GKW+ V  +R  MK++ + +    SW
Sbjct: 495 GNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSW 554

Query: 483 IEIKSKVHVFVTGD--RNHHMNDEIYAVLRSCTEQIRE 518
           IEI+ KV  F   D    H   +EIY +L +    I E
Sbjct: 555 IEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEE 592



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 178/427 (41%), Gaps = 52/427 (12%)

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
           +  A + + + A +    +A+     +    IR       S++      + L  GK +H 
Sbjct: 11  ICVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHR 70

Query: 133 WATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
                G +  N  + + ++ +Y+K     +A +VF+  H  N+ S+  M+ G +K     
Sbjct: 71  HLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLV 130

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
            A  +F  MP R+VVSWN M+ GY+Q G   EA+  + E  R G+  N  +    + A  
Sbjct: 131 RARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACV 190

Query: 252 NIAALGMGKSFHACAVKFLGKL-DVFVGNSLISFYAKCGSMEDSLLVFDKLT-------- 302
               L + +  H   V   G L +V +  S+I  YAKCG ME +   FD++T        
Sbjct: 191 KSRQLQLNRQAHG-QVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWT 249

Query: 303 -----------------------ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
                                  E+N V+W A+I GY + G G  A++ F +M   G++P
Sbjct: 250 TLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKP 309

Query: 340 NGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
              T    L A      +  G   + Y  +  +    ++     + ++D+ S+SG   EA
Sbjct: 310 EQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIV----ISSLIDMYSKSGSL-EA 364

Query: 397 KEFLYDLPFDP-GIGFWKALLGGCQIHSNVELGEFAARRI-----LALDPEDVSSYVMLS 450
            E ++ +  D     FW  ++     H    LG  A R +       + P   +  V+L 
Sbjct: 365 SERVFRICDDKHDCVFWNTMISALAQHG---LGHKALRMLDDMIKFRVQPNRTTLVVIL- 420

Query: 451 NALSVAG 457
           NA S +G
Sbjct: 421 NACSHSG 427



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 111/214 (51%), Gaps = 14/214 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T  +S  ++     +  ++F E+P+ N VS T +I  + +Q     A+ LF +M+ L 
Sbjct: 247 IWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALG 306

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           ++P +FTF S + +S ++  L  GK++H +  +  ++ N  V S+++D+Y K  S+E + 
Sbjct: 307 VKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASE 366

Query: 164 RVF---EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM------PHRNVVSWNAMIGG 214
           RVF   +D H  + V + TMI  L +      AL++  +M      P+R  +    ++  
Sbjct: 367 RVFRICDDKH--DCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLV--VILNA 422

Query: 215 YSQTGRNEEAVNLFIEM-LREGLVPNHSTLPCAI 247
            S +G  EE +  F  M ++ G+VP+     C I
Sbjct: 423 CSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLI 456


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 265/491 (53%), Gaps = 42/491 (8%)

Query: 20  LHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTI 79
           +H+    Y  ET  A    L T  ++   V  G+         ++++ + D +++S    
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGT---------KLYESMVDRDLISWNAY 487

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           +        Y+  + +F  ML     P+ +TF S++ S + L D++ G+Q+HA   K  L
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQL 547

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
             N FV +A++D+Y K                          C  L     EDA   F  
Sbjct: 548 DDNNFVCTALIDMYAK--------------------------CMYL-----EDADVAFNR 576

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           +  R++ +W  +I  Y+QT + E+A+N F +M +EG+ PN  TL   +   +++A+L  G
Sbjct: 577 LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           +  H+   K     D+FVG++L+  YAKCG ME++  +F+ L  R+ + WN +ICGYAQN
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQN 696

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-E 378
           G+G +A+  F  M   GI P+GVT  G+L AC+H GLVE+G  +F+ +   D G+    +
Sbjct: 697 GQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFN-SMYRDFGISPTVD 755

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           H ACMVD+L R G+F E ++F+  +        W+ +LG  ++H+N+ LGE AA ++  L
Sbjct: 756 HCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFEL 815

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
            PE+ SSY++LSN  +  G+WD+V  +R  M  KG+ + PGCSW+E   +VH FV+ D +
Sbjct: 816 QPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYS 875

Query: 499 HHMNDEIYAVL 509
           H    EI+  L
Sbjct: 876 HPQIQEIHLKL 886



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 151/299 (50%), Gaps = 31/299 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           V  ++PD +VVS T +I     +    ++IYLF  M    I P+EFT  + + + +    
Sbjct: 169 VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMA 228

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+LGKQ+HA A K+GL  ++FVGSA++DLY K   IE A+                    
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELAS-------------------- 268

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                      K+F  MP +N V+WN ++ GY+Q G     + LF  M+   +  N  TL
Sbjct: 269 -----------KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTL 317

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN   L  G+  H+  +K   + + F+G  L+  Y+KCG   D++ VF  + +
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +IV W+A+I    Q G+ EE+I+ F  MR+    PN  T+  LL A  +TG ++ G S
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS 436



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 143/290 (49%), Gaps = 31/290 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F  +P+ N V+   ++  +A++      + LF  M+ L+++ +EFT  +V+      +
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSK 328

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +L  G+ +H+   K G + N F+G  ++D+Y K                          C
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSK--------------------------C 362

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL       DA+ +F+ +   ++V W+A+I    Q G++EE++ LF  M     +PN  T
Sbjct: 363 GLAI-----DAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYT 417

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + AA N   L  G+S HAC  K+  + DV V N+L++ Y K G + D   +++ + 
Sbjct: 418 ICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMV 477

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           +R++++WNA + G    G  +  +  F  M   G  PN  T + +L +C+
Sbjct: 478 DRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 128/253 (50%), Gaps = 4/253 (1%)

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           + +D  NP+   + +++    K      A  +  +MP R+VVSW A+I G    G   ++
Sbjct: 138 IVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDS 197

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           + LF EM  EG++PN  TL   + A +   AL +GK  HA A K    LD+FVG++L+  
Sbjct: 198 IYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDL 257

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YAKCG +E +  +F  + E+N VTWN ++ GYAQ G     ++ F  M    ++ N  TL
Sbjct: 258 YAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTL 317

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDL 403
             +L  C ++  +++G    S   +   G    E   C +VD+ S+ G   +A      +
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSL--IIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 404 PFDPGIGFWKALL 416
              P I  W AL+
Sbjct: 376 K-KPDIVVWSALI 387



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A+  +LG+ K+ H   VK +   D  +  SL++ YAKC     + LV  K+ +R++V+W 
Sbjct: 123 ASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWT 182

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-KL 369
           A+I G    G   ++I  F+ M+  GI PN  TL   L AC+    ++ G    +QA KL
Sbjct: 183 ALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKL 242

Query: 370 EDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              G+L      + +VDL ++ G  + A +    +P    +  W  LL G
Sbjct: 243 ---GLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-WNVLLNG 288


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 256/480 (53%), Gaps = 31/480 (6%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           SVS  S +      H +F  +P+ N     TII  +A     E A+ +F +ML  ++ P 
Sbjct: 48  SVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPD 107

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA----- 162
           ++TF   + S  +   +  G+Q+H    K GL  ++F+ + ++ LY     IE+A     
Sbjct: 108 KYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLD 167

Query: 163 --------------------------TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKL 196
                                       +F++    NV S+  MI G +     E+A ++
Sbjct: 168 RMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRV 227

Query: 197 FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAAL 256
           F E P +NVVSWNAMI GYS  GR  E + LF +M   G+ P++ TL   + A A++ AL
Sbjct: 228 FGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGAL 287

Query: 257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
             G+  HA   K    +D FV  +L+  Y+KCGS+E +L VF+    ++I TWN++I G 
Sbjct: 288 SQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGL 347

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376
           + +G G+ A++ F  M + G +PN VT + +L AC+  GL+++G   F+           
Sbjct: 348 STHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPT 407

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436
            EHY CMVDLL R G  +EA+E +  +P       W++LLG C+ H NVEL E  A+++L
Sbjct: 408 IEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLL 467

Query: 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGD 496
            L P++ SS+V LSN  +  G+W +V  +R++M+ +G+ + PGCS IE+   V+ F+ G+
Sbjct: 468 ELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 527


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 263/491 (53%), Gaps = 31/491 (6%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     ++FD++PD NVV+ T +I  + K +  ++   LF  M    +  +  T   ++ 
Sbjct: 215 KIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLE 274

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR------------ 164
           +  + +    G Q+H     +G   + ++ ++I+ +Y +  SI+ A +            
Sbjct: 275 ACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVT 334

Query: 165 -------------------VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
                              +FE+    +VVS+TT+ICG     R ++ + LFQ MP ++ 
Sbjct: 335 WNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDA 394

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
           ++W A+I G       E A + FI+ML+  + PN  TL C + A A++A L  G   HA 
Sbjct: 395 IAWTAVISGLVSIEEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAI 454

Query: 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325
             K   + D+ + NSL+S Y+KCG+++D+L +F  +   N+V +N +I G AQNG G+EA
Sbjct: 455 VTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEA 514

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385
           +E F +M+ + + PN +T LG+L AC H GLVE+G  YF   +       +P+HYACMVD
Sbjct: 515 LEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVD 574

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445
           LL R+G F EA   +  +PFDP  G W A+LG    H  +++ E AA+ +  L+P   + 
Sbjct: 575 LLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATP 634

Query: 446 YVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           YV+LSN  S++G       IR   K +G+ + PGCSWI +K +VH+F  G ++     E+
Sbjct: 635 YVILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHLFHAGHQSIKNIKEM 694

Query: 506 YAVLRSCTEQI 516
             ++ +  E++
Sbjct: 695 TEIIYALAEEV 705



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 154/280 (55%), Gaps = 10/280 (3%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E+ + +   +VF+++PD NV S   +I  + +++  +EA  LFS M   N      ++ 
Sbjct: 89  AENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMPQRN----SVSYA 144

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           ++I         ++ ++LH     V + SNV +       Y K+  +E+A R+F+     
Sbjct: 145 TMITGFVHAGMFDMAEKLHR-EKPVIVSSNVLING-----YSKVGRVEDAVRIFDGMAEK 198

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +VVS+++MI GL +  +  +A KLF +MP RNVV+W  MI GY +    ++   LF+ M 
Sbjct: 199 DVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMR 258

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           REG+  N +TL   + A  +    G G   H   +     +D ++ NS+I+ Y++C S++
Sbjct: 259 REGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSID 318

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            +   FD + +++IVTWN++I GY Q+G  E+A+  FE M
Sbjct: 319 AAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENM 358



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 144/336 (42%), Gaps = 25/336 (7%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           N    +A+L  Y + S I +A  VF    +PNV SY  MI    +R   ++A +LF  MP
Sbjct: 77  NTVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMP 136

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            RN VS+  MI G+   G  + A  L            H   P  +I ++N+   G  K 
Sbjct: 137 QRNSVSYATMITGFVHAGMFDMAEKL------------HREKP--VIVSSNVLINGYSKV 182

Query: 262 FHA-CAVKF---LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
                AV+    + + DV   +S+IS   + G + ++  +FDK+ +RN+VTW  +I GY 
Sbjct: 183 GRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYM 242

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
           +    ++    F  MR  G+  N  TL  LL AC       +G        +   G    
Sbjct: 243 KMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQI--HGLVLSLGFDVD 300

Query: 378 EHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436
            + A  ++ + SR      A +  +DL     I  W +L+ G     N+E   F      
Sbjct: 301 AYLANSIITMYSRCYSIDAAAK-QFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFEN-- 357

Query: 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +  +DV S+  L    +  G+ D    + + M EK
Sbjct: 358 -MPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEK 392


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 252/458 (55%), Gaps = 37/458 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQH-HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           ++FD +P  NVV+ TT++   A      +EA+     M    + P+ +TF SV+ + T  
Sbjct: 125 RMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTP 184

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L     +HA   K GL S+VFV S+++D Y+KL  ++   RVF+              
Sbjct: 185 GMLT---AVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFD-------------- 227

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                            EM  R++V WN++I G++Q+G    A+ LF+ M   G   N  
Sbjct: 228 -----------------EMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQG 270

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   + A   +  L  G+  HA  +K+    D+ + N+L+  Y KCGS+ED+  +F ++
Sbjct: 271 TLTSVLRACTGMVMLEAGRQVHAHVLKY--DRDLILHNALLDMYCKCGSLEDADALFHRM 328

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +R++++W+ ++ G AQNG+  EA+  F+ M+  G+ PN VT++G+L+AC+H GLVE G+
Sbjct: 329 PQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGW 388

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            YF   K       + EH+ CMVDLL R+G+  EA EF++ +  +P    W+ LLG C++
Sbjct: 389 HYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRM 448

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N  L  +AAR IL L+P+D  + V+LSN  +   +W +     + M+++GM + PG S
Sbjct: 449 HKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRS 508

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           WIE++ +VHVF+ GD +H  +D I   L     +I+  
Sbjct: 509 WIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSL 546



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ-NGRGEEAIEFF 329
           G   +FV NSL S YAK G ++D+L +FD +  RN+VTW  V+   A  +GR +EA+ F 
Sbjct: 100 GAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFL 159

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
             MR +G+ PN  T   +L AC   G++   ++   +A L+
Sbjct: 160 VAMRRDGVAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLD 200


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 258/462 (55%), Gaps = 17/462 (3%)

Query: 63  QVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRML------LLNIRPSEFTFGSV 114
           ++ D +P    NVVS  T+I   A+     EA+ +F+++          +    FT  S 
Sbjct: 117 RLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSA 176

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
             +   L D    ++LH      G++  V + +A++D Y K   +E+A  +F+     + 
Sbjct: 177 ASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGLFDQMTIRDS 236

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           VS+T+MI G  +    +DA+++F  MP ++ ++W A+I G+ Q G  E A+ LF  M  E
Sbjct: 237 VSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGE 296

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK-FLGK--LDVFVGNSLISFYAKCGSM 291
           G+VP    L   + A A +  +  GK  H   ++  +G    +VF+ N+LI  Y+KCG M
Sbjct: 297 GVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDM 356

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             ++ VFD++ ER+I++WN+++ G++ NG+G++++  FERM  + ++P  VT L +L AC
Sbjct: 357 VAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTAC 416

Query: 352 NHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           +H GLV  G        ++D G+  + EHYA  +D L R+ + +EA EF+  L    G+G
Sbjct: 417 SHAGLVSDGRRILE--SMQDHGVEPRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLG 474

Query: 411 F---WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W ALLG C +H N+E+ E  A  +  L+PE+   YVMLSN  S AG+WD+   +R 
Sbjct: 475 TTGSWGALLGACHVHGNIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWDDARQVRA 534

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            MK KG+ +    SWIE++   H+FV  D +HH  +EIY +L
Sbjct: 535 LMKGKGLRKDQAYSWIEVQRAKHMFVADDTSHHEANEIYEML 576



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 127/275 (46%), Gaps = 40/275 (14%)

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           LG  +HA   K  L  +  + + ++ LY  L +   +   F+D  + N  SY +++  L 
Sbjct: 47  LGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHKNAHSYNSLLAALA 106

Query: 186 K-RERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHS 241
           + R    DAL+L   MP   RNVVS+N +I   ++ GR  EA+ +F ++ R+ GL     
Sbjct: 107 RGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQV 166

Query: 242 TLPCAIIAAANIAALGMG-----KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            +    + +A  A  G+      +  H   V    ++ V + N+++  Y+K G +ED+  
Sbjct: 167 AIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARG 226

Query: 297 VFDKLTERNIVTWNAVICGYA-------------------------------QNGRGEEA 325
           +FD++T R+ V+W ++I GY                                QNG  E A
Sbjct: 227 LFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIA 286

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +E FERM   G+ P    L+  L AC   GLV +G
Sbjct: 287 LELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 256/462 (55%), Gaps = 43/462 (9%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V  GS  D  S    +FD++P+ NVVS TT++   A+      A  LF  M         
Sbjct: 121 VRLGSMEDARS----LFDQMPERNVVSYTTMVDGLARCGEVASARELFDAM--------- 167

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
                  P+          + L +WA             A++  Y+  + +EEA ++FE 
Sbjct: 168 -------PT----------RNLVSWA-------------AMISGYVDNNMLEEARKLFEA 197

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               NVV+ T MI G  K    ++A +LF  +  ++V+SWNA+I GY   G  EEA  L+
Sbjct: 198 MPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLY 257

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           I MLREG+ P+ +TL   + A +++A L  G+S HA  +K + +  + + N+L++ Y+KC
Sbjct: 258 IIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKC 317

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G++++S LVF  L  ++IV+WN +I  YAQ+GR ++ I  F  M + G+ PN +T L +L
Sbjct: 318 GNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSML 377

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC H G V++    F     +     + EHYAC+VD+LSR+G+ ++A  ++ ++P +  
Sbjct: 378 SACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPSEAE 437

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W  LL   Q H NV+LGE AA+ ++  D E   +YVMLSN  + AG W  V+ +R +
Sbjct: 438 KNVWGTLLCASQTHGNVQLGELAAKMLVLSDFESSGAYVMLSNIYAAAGMWGEVNRVRSQ 497

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           MKEKG+ + PG SW EI  KVH+FV GD +H   D I + LR
Sbjct: 498 MKEKGVKKQPGHSWTEIADKVHMFVGGDASHPEMDMILSELR 539



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 138/292 (47%), Gaps = 17/292 (5%)

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           NV S+  M+ GL++    EDA  LF +MP RNVVS+  M+ G ++ G    A  LF  M 
Sbjct: 109 NVASWNAMLAGLVRLGSMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMP 168

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              LV   + +   +    N       K F A   K     +V    ++I+ Y K G ++
Sbjct: 169 TRNLVSWAAMISGYV---DNNMLEEARKLFEAMPEK-----NVVACTAMITGYCKEGDLQ 220

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           ++  +FD +  +++++WNA+I GY  NG GEEA + +  M   GI+P+  TL+ LL AC+
Sbjct: 221 NARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACS 280

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
              L+ +G S  +   +    ML+     C  ++ + S+ G   E++     L     I 
Sbjct: 281 SLALLRQGRSTHA---VVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLK-SQDIV 336

Query: 411 FWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
            W  ++     H   +  +  F    +  L P D++   MLS A   AG+ D
Sbjct: 337 SWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLS-ACGHAGRVD 387



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 127/284 (44%), Gaps = 31/284 (10%)

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV-NLFIEMLREGLVPN 239
           I  L +      A ++F  MP R+ VSWNA++    + GR+  A  +LF +M      P+
Sbjct: 23  ITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDM------PS 76

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            + +    I A  +A   +  +          + +V   N++++   + GSMED+  +FD
Sbjct: 77  RNVISWNSIIAGCLAHGDLAAASA--YFARAPRRNVASWNAMLAGLVRLGSMEDARSLFD 134

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ ERN+V++  ++ G A+ G    A E F+ M    +         + WA   +G V+ 
Sbjct: 135 QMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNL---------VSWAAMISGYVDN 185

Query: 360 GYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
             +   +A+     M +    AC  M+    + G  + A+  L+D      +  W A++ 
Sbjct: 186 --NMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARR-LFDGIRAKDVISWNAIIS 242

Query: 418 GCQIHSNVELGEFAARRIL-----ALDPEDVSSYVMLSNALSVA 456
           G  +H+   LGE A +  +      + P+  +   +L+   S+A
Sbjct: 243 G-YVHNG--LGEEATKLYIIMLREGIKPDQATLIALLTACSSLA 283



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 28/186 (15%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG-EEAIEFFERMRINGI 337
           N  I+  A+ G +  +  VFD +  R+ V+WNA++    + GR    A   F+ M    +
Sbjct: 20  NQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNV 79

Query: 338 RPNGVTLLGLL----------------------WACNHTGLVEKGYSYFSQAKLEDPGML 375
                 + G L                      W     GLV  G    +++  +     
Sbjct: 80  ISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMPER 139

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
               Y  MVD L+R G    A+E    +P    +  W A++ G   ++ +E     AR++
Sbjct: 140 NVVSYTTMVDGLARCGEVASARELFDAMPTRNLVS-WAAMISGYVDNNMLE----EARKL 194

Query: 436 LALDPE 441
               PE
Sbjct: 195 FEAMPE 200


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/491 (35%), Positives = 281/491 (57%), Gaps = 41/491 (8%)

Query: 37  QKLETPAIRT--DSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIY 94
           +K+ TP + +    +S  +   + +    +F+E+P  N+VS   +IG + +++  ++A  
Sbjct: 226 KKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYK 285

Query: 95  LFSRML-------------------------LLNIRPSEFTFGSVIPSSTALED--LNLG 127
           LF  M                          +LN+ P +      I + TA+ +  L  G
Sbjct: 286 LFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYK-----NIAAQTAMINGYLQSG 340

Query: 128 KQLHAWA--TKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           +   A    +++ ++ +V   S I   Y      +EA R+F++    ++VS+ TMI    
Sbjct: 341 RMDEANEIFSQISVRDSVCWNSMITG-YAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYA 399

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           +  + + AL++F EM  RNVVSWN++I GY Q G   EA+N FI M ++G  P+ +T+ C
Sbjct: 400 QAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVC 459

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + A+AN+AAL +G   H   +K     D+FV N++++ YAK G + ++  VF ++  ++
Sbjct: 460 CLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKD 519

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           +V+WN++I GYA NG G+EA+E FE M + GI P+ VT  GLL ACNH G V++G + F 
Sbjct: 520 VVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFK 579

Query: 366 QAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              + +   +KP  EHYAC+++LL R GR +EA E +  +        W ALL  C+IH 
Sbjct: 580 S--MTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHH 637

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N+EL +++A R+LAL+P++ S+YV+LSN  + AG+WD V  +R  MKE    + PGCSWI
Sbjct: 638 NLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWI 697

Query: 484 EIKSKVHVFVT 494
           EI +++H F++
Sbjct: 698 EIDNQLHCFLS 708



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 211/485 (43%), Gaps = 78/485 (16%)

Query: 49  VSCGSESDKFSSVHQVFDEVPD-LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           ++C +   +     ++F+ +PD  + V    +I  +AK+  + EA  LF  ML+ N+   
Sbjct: 115 ITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNV--- 171

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             ++ S++   T    + LG Q       +G + NV   + ++D Y+ +  ++ A   F+
Sbjct: 172 -VSWNSILSGYTKNGKMQLGLQFF---EAMG-ERNVVSWNLMVDGYVGVGDLDSAWMFFK 226

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
               PNVVS+ TM+ G     R  +A  LF EMP +N+VSWNAMIG Y +  + ++A  L
Sbjct: 227 KIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKL 286

Query: 228 FIEMLREGLVP-----NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL--------- 273
           F+EM  +  V      N       ++ A  I  L   K+  A      G L         
Sbjct: 287 FMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEAN 346

Query: 274 ---------DVFVGNSLISFYAKC-------------------------------GSMED 293
                    D    NS+I+ YA C                               G M+ 
Sbjct: 347 EIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDK 406

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +L +F+++ ERN+V+WN++I GY QNG   EA+  F  M+  G +P+  T++  L A  +
Sbjct: 407 ALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASAN 466

Query: 354 TGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
              +  G        +    +   +K      ++ + ++SGR  EA+    ++     + 
Sbjct: 467 LAALNVGVQLHHLTIKTGFGNDLFVKN----AILTMYAKSGRVPEAENVFAEIKXKDVVS 522

Query: 411 FWKALLGGCQIHS----NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
            W +L+ G  ++      VEL E    R   + P++V+   +LS A +  G  D   N+ 
Sbjct: 523 -WNSLIAGYALNGCGKEAVELFEVMPLR--GIIPDEVTFTGLLS-ACNHGGFVDQGLNLF 578

Query: 467 REMKE 471
           + M E
Sbjct: 579 KSMTE 583



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 137/300 (45%), Gaps = 20/300 (6%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           IEEA  VF      N+V+Y +MI    K  R  +A +LF  MP RN+VSWN+MI GY   
Sbjct: 31  IEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHN 90

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
              E+A  LF  M +  +      + C       I  L   +           K D    
Sbjct: 91  ELVEDAARLFDRMFKRDIYSWTLMITC----YTRIGELEKARELFNL---LPDKQDTVCR 143

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N+LI+ YAK     ++  +FD++  +N+V+WN+++ GY +NG+ +  ++FFE M    + 
Sbjct: 144 NALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVV 203

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
              + + G +      G ++  + +F   K+  P ++    +  M+   +  GR  EA+ 
Sbjct: 204 SWNLMVDGYV----GVGDLDSAWMFFK--KIPTPNVVS---WVTMLSGFAHYGRMTEARN 254

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
              ++P    +  W A++G     + +   + A +  + +  +D  S+  + N     GK
Sbjct: 255 LFNEMPTKNLVS-WNAMIGAYVRENQI---DDAYKLFMEMPEKDSVSWTAMINGYVRVGK 310



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 153/330 (46%), Gaps = 28/330 (8%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           + N+   ++++  Y K   I  A  +F+     N+VS+ +MI G L  E  EDA +LF  
Sbjct: 43  ERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDR 102

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  R++ SW  MI  Y++ G  E+A  LF       L+P+     C     A IA     
Sbjct: 103 MFKRDIYSWTLMITCYTRIGELEKARELF------NLLPDKQDTVC---RNALIAGYAKK 153

Query: 260 KSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           + F      F   L  +V   NS++S Y K G M+  L  F+ + ERN+V+WN ++ GY 
Sbjct: 154 RLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYV 213

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
             G  + A  FF+++      PN V+ + +L    H G + +  + F++   ++      
Sbjct: 214 GVGDLDSAWMFFKKIPT----PNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKN-----L 264

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE-FAARRIL 436
             +  M+    R  +  +A +   ++P    +  W A++ G      V +G+   AR IL
Sbjct: 265 VSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVS-WTAMINGY-----VRVGKLLQAREIL 318

Query: 437 ALDP-EDVSSYVMLSNALSVAGKWDNVSNI 465
            L P +++++   + N    +G+ D  + I
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEI 348



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/436 (20%), Positives = 188/436 (43%), Gaps = 46/436 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-- 106
           +S    S +      VF ++ + N+V+  ++I  +AK      A  LF  M   N+    
Sbjct: 22  ISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81

Query: 107 ---SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
              + +    ++  +  L D    + +++W             + ++  Y ++  +E+A 
Sbjct: 82  SMIAGYLHNELVEDAARLFDRMFKRDIYSW-------------TLMITCYTRIGELEKAR 128

Query: 164 RVFEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            +F    +  + V    +I G  K+  F +A KLF EM  +NVVSWN+++ GY++ G+ +
Sbjct: 129 ELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQ 188

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL---DVFVGN 279
             +  F E + E  V + + +    +   ++ +  M          F  K+   +V    
Sbjct: 189 LGLQFF-EAMGERNVVSWNLMVDGYVGVGDLDSAWM----------FFKKIPTPNVVSWV 237

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           +++S +A  G M ++  +F+++  +N+V+WNA+I  Y +  + ++A + F  M       
Sbjct: 238 TMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP----EK 293

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           + V+     W     G V  G    ++  L             M++   +SGR  EA E 
Sbjct: 294 DSVS-----WTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEI 348

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
              +     +  W +++ G   +++    + A R    +  +D+ S+  +  A + AG+ 
Sbjct: 349 FSQISVRDSV-CWNSMITG---YAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQM 404

Query: 460 DNVSNIRREMKEKGMT 475
           D    +  EM+E+ + 
Sbjct: 405 DKALEMFNEMQERNVV 420


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 167/508 (32%), Positives = 276/508 (54%), Gaps = 35/508 (6%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           LN+     ++     + T       L +  +RT  +   ++ D       +FDE+P  NV
Sbjct: 69  LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNV 128

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS T +I  ++++    EA+ LF  ML  +  P+ FTF +++ S         G+Q+H+ 
Sbjct: 129 VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSI 188

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
           A K   +S++FVGS++LD+Y K                      +  IC         DA
Sbjct: 189 AIKRNYESHMFVGSSLLDMYAK----------------------SGRIC---------DA 217

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             +F  +P R+VV+  A+I GY+Q G +EEA+ LF ++  EG+  N  T    + A + +
Sbjct: 218 HGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGL 277

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           AAL  GK  H+  ++      V + NSLI  Y+KCG++  +  +FD + ER  ++WNA++
Sbjct: 278 AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAML 337

Query: 314 CGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
            GY+++G   E +E F+ MR  N ++P+ +T L +L  C+H  L + G   F        
Sbjct: 338 VGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKD 397

Query: 373 GMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
           G ++P+  HY C+VDLL R+GR +EA +F+  +PF P    W +LLG C++HS+VE+G  
Sbjct: 398 G-IEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGII 456

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
             +++L L+PE+  +YV+LSN  + AGKW+++ NIR  M+EK +T+ PG SW+E+   VH
Sbjct: 457 VGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVH 516

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            F   D  H   +E+   ++  + + +E
Sbjct: 517 TFHASDHTHPRREEVANKVKELSIKFKE 544



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 147/301 (48%), Gaps = 25/301 (8%)

Query: 148 AILDLYIKLSSIEEATRV----FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
           +IL+  +   +I E  RV     +  + P+V   T +I    K +   DA  +F EMP R
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQR 126

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           NVVSW AMI  YSQ G   EA+NLF+EMLR    PNH T    + +         G+  H
Sbjct: 127 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIH 186

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
           + A+K   +  +FVG+SL+  YAK G + D+  VF  L ER++V   A+I GYAQ G  E
Sbjct: 187 SIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDE 246

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-- 381
           EA++ F +++I G+  N VT   +L A +       G +  +  K     +L+   Y+  
Sbjct: 247 EALKLFRQLQIEGMNSNSVTYASVLTALS-------GLAALNHGKQVHSHVLRSGQYSYV 299

Query: 382 ----CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA 437
                ++D+ S+ G    A+     +P    I  W A+L G   H         AR +L 
Sbjct: 300 VLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS-WNAMLVGYSKHG-------MAREVLE 351

Query: 438 L 438
           L
Sbjct: 352 L 352


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 258/449 (57%), Gaps = 36/449 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVVS T +I  F +    EEA+ LFS M    +RP+EFT+  ++   TAL  ++   ++H
Sbjct: 365 NVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVIL---TALPVIS-PSEVH 420

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   + +  VG+A+LD Y+KL  ++EA +V                          
Sbjct: 421 AQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKV-------------------------- 454

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI-IAA 250
                F  + ++++V+W+AM+ GY+Q G  E A+ +F E+ + G+ PN  T    + + A
Sbjct: 455 -----FSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCA 509

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A  A++G GK FH  A+K      + V ++L++ YAK G +E +  VF +  E+++V+WN
Sbjct: 510 ATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWN 569

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I GYAQ+G+  +A++ F+ M+   ++ + VT +G+  AC H GLVE+G  YF     +
Sbjct: 570 SMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRD 629

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
                  EH +CMVDL SR+G+ ++A + + ++P   G   W+ +L  C++H   ELG  
Sbjct: 630 CKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRL 689

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
           AA +I+A+ PED ++YV+LSN  + +G W   + +R+ M E+ + + PG SWIE+K+K +
Sbjct: 690 AAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTY 749

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            F+ GDR+H + D+IY  L   + ++++ 
Sbjct: 750 AFLAGDRSHPLKDQIYMKLEDLSTRLKDL 778



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 31/300 (10%)

Query: 52  GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
            + S +    H +FD+ PD +  S T+++  F++    +EA  LF  +  L +      F
Sbjct: 41  AASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIF 100

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            SV+  S  L D   G+QLH    K G   +V VG++++D Y+K S+ ++   VF++   
Sbjct: 101 SSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKE 160

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            NVV++TT+I G                               Y++   NEE + LF+ M
Sbjct: 161 RNVVTWTTLISG-------------------------------YARNSLNEEVLTLFMRM 189

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             EG  PN  T   A+   A     G G   H   VK      + V NSLI+ Y KCG++
Sbjct: 190 QDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNV 249

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             + ++FDK   +++VTWN++I GYA NG   EA+  F  MR+N +R +  +   ++  C
Sbjct: 250 RKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLC 309



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 170/388 (43%), Gaps = 52/388 (13%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           L+  ++ T  V    +   F     VFDE+ + NVV+ TT+I  +A+    EE + LF R
Sbjct: 129 LDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMR 188

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M     +P+ FTF + +           G Q+H    K GL   + V +++++LY+K   
Sbjct: 189 MQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLK--- 245

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
                                  CG +++ R      LF +   ++VV+WN+MI GY+  
Sbjct: 246 -----------------------CGNVRKARI-----LFDKTEVKSVVTWNSMISGYAAN 277

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G + EA+ +F  M    +  + S+    I   AN+  L   +  H   VK+    D  + 
Sbjct: 278 GLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIR 337

Query: 279 NSLISFYAKCGSMEDSLLVFDKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            +L+  Y+KC +M D+L +F +     N+V+W A+I G+ QN   EEA+  F  M+  G+
Sbjct: 338 TALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGV 397

Query: 338 RPNGVTLLGLLWACN-------HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
           RPN  T   +L A         H  +V+  Y   S                 ++D   + 
Sbjct: 398 RPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG------------TALLDAYVKL 445

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           G+  EA +    +  +  I  W A+L G
Sbjct: 446 GKVDEAAKVFSGID-NKDIVAWSAMLAG 472



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 2/236 (0%)

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     R   A  LF + P R+  S+ +++ G+S+ GR +EA  LF+ +   G+  + S 
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +  +A +     G+  H   +KF    DV VG SL+  Y K  + +D   VFD++ 
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMK 159

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ERN+VTW  +I GYA+N   EE +  F RM+  G +PN  T    L      G+  +G  
Sbjct: 160 ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             +           P   + +++L  + G  ++A+  L+D      +  W +++ G
Sbjct: 220 VHTVVVKNGLDKTIPVSNS-LINLYLKCGNVRKAR-ILFDKTEVKSVVTWNSMISG 273



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 6/197 (3%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     +VF  + + ++V+ + ++  +A+    E AI +FS +    ++P+EFTF S++ 
Sbjct: 447 KVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILN 506

Query: 117 SSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
              A    +  GKQ H +A K  L S++ V SA+L +Y K   IE A  VF+     ++V
Sbjct: 507 VCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLV 566

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEM 231
           S+ +MI G  +  +   AL +F+EM  R V    V++  +    +  G  EE    F  M
Sbjct: 567 SWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIM 626

Query: 232 LRE-GLVPNHSTLPCAI 247
           +R+  + P      C +
Sbjct: 627 VRDCKIAPTKEHNSCMV 643


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/491 (35%), Positives = 281/491 (57%), Gaps = 41/491 (8%)

Query: 37  QKLETPAIRT--DSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIY 94
           +K+ TP + +    +S  +   + +    +F+E+P  N+VS   +IG + +++  ++A  
Sbjct: 226 KKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYK 285

Query: 95  LFSRML-------------------------LLNIRPSEFTFGSVIPSSTALED--LNLG 127
           LF  M                          +LN+ P +      I + TA+ +  L  G
Sbjct: 286 LFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKN-----IAAQTAMINGYLQSG 340

Query: 128 KQLHAWA--TKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           +   A    +++ ++ +V   S I   Y      +EA R+F++    ++VS+ TMI    
Sbjct: 341 RMDEANEIFSQISVRDSVCWNSMITG-YAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYA 399

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           +  + + AL++F EM  RNVVSWN++I GY Q G   EA+N FI M ++G  P+ +T+ C
Sbjct: 400 QAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVC 459

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + A+AN+AAL +G   H   +K     D+FV N++++ YAK G + ++  VF ++  ++
Sbjct: 460 CLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKD 519

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           +V+WN++I GYA NG G+EA+E FE M + GI P+ VT  GLL ACNH G V++G + F 
Sbjct: 520 VVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFK 579

Query: 366 QAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              + +   +KP  EHYAC+++LL R GR +EA E +  +        W ALL  C+IH 
Sbjct: 580 S--MTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHH 637

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N+EL +++A R+LAL+P++ S+YV+LSN  + AG+WD V  +R  MKE    + PGCSWI
Sbjct: 638 NLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWI 697

Query: 484 EIKSKVHVFVT 494
           EI +++H F++
Sbjct: 698 EIDNQLHCFLS 708



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 123/485 (25%), Positives = 212/485 (43%), Gaps = 78/485 (16%)

Query: 49  VSCGSESDKFSSVHQVFDEVPD-LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           ++C +   +     ++F+ +PD  + V    +I  +AK+  + EA  LF  ML+ N+   
Sbjct: 115 ITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNV--- 171

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             ++ S++   T    + LG Q       +G + NV   + ++D Y+ +  ++ A   F+
Sbjct: 172 -VSWNSILSGYTKNGKMQLGLQFF---EAMG-ERNVVSWNLMVDGYVGVGDLDSAWMFFK 226

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
               PNVVS+ TM+ G     R  +A  LF EMP +N+VSWNAMIG Y +  + ++A  L
Sbjct: 227 KIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKL 286

Query: 228 FIEMLREGLVP-----NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL--------- 273
           F+EM  +  V      N       ++ A  I  L   K+  A      G L         
Sbjct: 287 FMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEAN 346

Query: 274 ---------DVFVGNSLISFYAKC-------------------------------GSMED 293
                    D    NS+I+ YA C                               G M+ 
Sbjct: 347 EIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDK 406

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +L +F+++ ERN+V+WN++I GY QNG   EA+  F  M+  G +P+  T++  L A  +
Sbjct: 407 ALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASAN 466

Query: 354 TGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
              +  G        +    +   +K      ++ + ++SGR  EA+    ++  +  + 
Sbjct: 467 LAALNVGVQLHHLTIKTGFGNDLFVKN----AILTMYAKSGRVPEAENVFAEIK-NKDVV 521

Query: 411 FWKALLGGCQIHS----NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
            W +L+ G  ++      VEL E    R   + P++V+   +LS A +  G  D   N+ 
Sbjct: 522 SWNSLIAGYALNGCGKEAVELFEVMPLR--GIIPDEVTFTGLLS-ACNHGGFVDQGLNLF 578

Query: 467 REMKE 471
           + M E
Sbjct: 579 KSMTE 583



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 137/300 (45%), Gaps = 20/300 (6%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           IEEA  VF      N+V+Y +MI    K  R  +A +LF  MP RN+VSWN+MI GY   
Sbjct: 31  IEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHN 90

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
              E+A  LF  M +  +      + C       I  L   +           K D    
Sbjct: 91  ELVEDAARLFDRMFKRDIYSWTLMITC----YTRIGELEKARELFNL---LPDKQDTVCR 143

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N+LI+ YAK     ++  +FD++  +N+V+WN+++ GY +NG+ +  ++FFE M    + 
Sbjct: 144 NALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVV 203

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
              + + G +      G ++  + +F   K+  P ++    +  M+   +  GR  EA+ 
Sbjct: 204 SWNLMVDGYV----GVGDLDSAWMFFK--KIPTPNVVS---WVTMLSGFAHYGRMTEARN 254

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
              ++P    +  W A++G     + +   + A +  + +  +D  S+  + N     GK
Sbjct: 255 LFNEMPTKNLVS-WNAMIGAYVRENQI---DDAYKLFMEMPEKDSVSWTAMINGYVRVGK 310



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 153/330 (46%), Gaps = 28/330 (8%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           + N+   ++++  Y K   I  A  +F+     N+VS+ +MI G L  E  EDA +LF  
Sbjct: 43  ERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDR 102

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  R++ SW  MI  Y++ G  E+A  LF       L+P+     C     A IA     
Sbjct: 103 MFKRDIYSWTLMITCYTRIGELEKARELF------NLLPDKQDTVC---RNALIAGYAKK 153

Query: 260 KSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           + F      F   L  +V   NS++S Y K G M+  L  F+ + ERN+V+WN ++ GY 
Sbjct: 154 RLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYV 213

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
             G  + A  FF+++      PN V+ + +L    H G + +  + F++   ++      
Sbjct: 214 GVGDLDSAWMFFKKIPT----PNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKN-----L 264

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE-FAARRIL 436
             +  M+    R  +  +A +   ++P    +  W A++ G      V +G+   AR IL
Sbjct: 265 VSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVS-WTAMINGY-----VRVGKLLQAREIL 318

Query: 437 ALDP-EDVSSYVMLSNALSVAGKWDNVSNI 465
            L P +++++   + N    +G+ D  + I
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEI 348



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/436 (20%), Positives = 188/436 (43%), Gaps = 46/436 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-- 106
           +S    S +      VF ++ + N+V+  ++I  +AK      A  LF  M   N+    
Sbjct: 22  ISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81

Query: 107 ---SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
              + +    ++  +  L D    + +++W             + ++  Y ++  +E+A 
Sbjct: 82  SMIAGYLHNELVEDAARLFDRMFKRDIYSW-------------TLMITCYTRIGELEKAR 128

Query: 164 RVFEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            +F    +  + V    +I G  K+  F +A KLF EM  +NVVSWN+++ GY++ G+ +
Sbjct: 129 ELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQ 188

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL---DVFVGN 279
             +  F E + E  V + + +    +   ++ +  M          F  K+   +V    
Sbjct: 189 LGLQFF-EAMGERNVVSWNLMVDGYVGVGDLDSAWM----------FFKKIPTPNVVSWV 237

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           +++S +A  G M ++  +F+++  +N+V+WNA+I  Y +  + ++A + F  M       
Sbjct: 238 TMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP----EK 293

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           + V+     W     G V  G    ++  L             M++   +SGR  EA E 
Sbjct: 294 DSVS-----WTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEI 348

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
              +     +  W +++ G   +++    + A R    +  +D+ S+  +  A + AG+ 
Sbjct: 349 FSQISVRDSV-CWNSMITG---YAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQM 404

Query: 460 DNVSNIRREMKEKGMT 475
           D    +  EM+E+ + 
Sbjct: 405 DKALEMFNEMQERNVV 420


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 259/460 (56%), Gaps = 5/460 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P+ +VVS  T++  +A+  +  EA++ F  +    I+ +EF+F  ++ +      
Sbjct: 135 VFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQ 194

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L L +Q H      G  SNV +  +I+D Y K   +E A R F++    ++  +TT+I G
Sbjct: 195 LQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISG 254

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K    E A KLF+EMP +N VSW A+I GY + G  + A++LF +M+   + P   T 
Sbjct: 255 YAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTF 314

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A+A+IA+L  GK  H   ++   + +  V +SLI  Y+K GS+E S  VF    +
Sbjct: 315 SSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYD 374

Query: 304 R-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           + + V WN +I   AQ+G G +A++  + M    + PN  TL+ +L AC+H+GLVE+G  
Sbjct: 375 KQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVR 434

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F    ++   +   EHYAC++DLL R+G FKE    + ++PF+P    W A+LG C+IH
Sbjct: 435 WFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRIH 494

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N ELG+ AA  ++ LDPE  + Y++LS+  +  GKW+ V  +R  MK++ + +    SW
Sbjct: 495 GNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNKEKAVSW 554

Query: 483 IEIKSKVHVFVTGD----RNHHMNDEIYAVLRSCTEQIRE 518
           IEI++KV  F   D      H   +EIY +L +    + E
Sbjct: 555 IEIENKVKAFTVSDGSHAHAHARKEEIYFILHNLAALMEE 594



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 46/372 (12%)

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
           +  A +++ R A +    +A+     +    IR       S++      + L  GK +H 
Sbjct: 11  ICVARSLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHR 70

Query: 133 WATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
                G +  N  + + ++ +Y+K     +A +VF+  H  N+ S+  M+ G +K     
Sbjct: 71  HLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLV 130

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN------------ 239
            A  +F  MP R+VVSWN M+ GY+Q G   EA+  F E+ R G+  N            
Sbjct: 131 RARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACV 190

Query: 240 ----------------------HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
                                 +  L C+II A   A  G  +S   C  +   K D+ +
Sbjct: 191 KSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDA--YAKCGQMESAKRCFDEMTVK-DIHI 247

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
             +LIS YAK G ME +  +F ++ E+N V+W A+I GY + G G+ A++ F +M    +
Sbjct: 248 WTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRV 307

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +P   T    L A      +  G   + Y  +  +    ++     + ++D+ S+SG   
Sbjct: 308 KPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVT----SSLIDMYSKSGSL- 362

Query: 395 EAKEFLYDLPFD 406
           EA E ++ + +D
Sbjct: 363 EASERVFRICYD 374



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 110/210 (52%), Gaps = 6/210 (2%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T  +S  ++     +  ++F E+P+ N VS T +I  + +Q   + A+ LF +M+ + 
Sbjct: 247 IWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMR 306

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           ++P +FTF S + +S ++  L  GKQ+H +  +  ++ N  V S+++D+Y K  S+E + 
Sbjct: 307 VKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASE 366

Query: 164 RVFEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQT 218
           RVF   ++  + V + TMI  L +      AL++  +M     H N  +   ++   S +
Sbjct: 367 RVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHS 426

Query: 219 GRNEEAVNLFIEM-LREGLVPNHSTLPCAI 247
           G  EE V  F  M ++ G+VP+     C I
Sbjct: 427 GLVEEGVRWFESMTVQHGIVPDQEHYACLI 456



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 5/184 (2%)

Query: 259 GKSFHACAV-KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           GK   AC V   +   +++  N+++S + K G +  + +VFD + ER++V+WN ++ GYA
Sbjct: 96  GKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYA 155

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
           Q+G   EA+ FF+ +R +GI+ N  +  GLL AC  +  ++       Q  +   G L  
Sbjct: 156 QDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLV--AGFLSN 213

Query: 378 EHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436
              +C ++D  ++ G+ + AK   +D      I  W  L+ G     ++E  +   R + 
Sbjct: 214 VVLSCSIIDAYAKCGQMESAKR-CFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMP 272

Query: 437 ALDP 440
             +P
Sbjct: 273 EKNP 276


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 249/444 (56%), Gaps = 37/444 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQH-HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           ++FD +P+ NVV+ TT++   A      EEA+     M    + P+ +TF SV+ +    
Sbjct: 136 RLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTP 195

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L     LHA   KVGL S+VFV S+++D Y+KL  ++   RVF+              
Sbjct: 196 GVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFD-------------- 238

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                            EM  R++V WN++I G++Q+G    A+ LF+ M   G   N  
Sbjct: 239 -----------------EMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQG 281

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   + A   +  L  G+  HA  +K+  + D+ + N+L+  Y KCGS+ED+  +F ++
Sbjct: 282 TLTSVLRACTGMVMLEAGRQVHAHVLKY--ERDLILHNALLDMYCKCGSLEDAEALFHRM 339

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +R++++W+ +I G AQNG+  EA+  F+ M+  G+ PN +T++G+L+AC+H GLVE G+
Sbjct: 340 PQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGW 399

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            YF   K       + EH+ CMVDLL R+G+  EA EF+ D+  +P    W+ LLG C++
Sbjct: 400 YYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRM 459

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H +  L  +AAR IL L+P+D  + V+LSN  +   +W +     + M+++GM + PG S
Sbjct: 460 HKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRS 519

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEI 505
           WIE++  VHVF+ GD +H  +D I
Sbjct: 520 WIELEKHVHVFIAGDLSHPCSDTI 543



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ-NGRGEEAIEFFERMR 333
           +FV NSL+S YAK G ++D+L +FD++ ERN+VTW  V+   A  +GR EEA+ F   M 
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMW 174

Query: 334 INGIRPNGVTLLGLLWACNHTGLV 357
            +G+ PN  T   +L AC   G++
Sbjct: 175 RDGVAPNAYTFSSVLGACGTPGVL 198


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 252/468 (53%), Gaps = 35/468 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS      +  Q+FD + + NVVS  ++I  + +  + +EA+ +F +ML   ++P++ +
Sbjct: 284 CGS----LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
               + +   L DL  G+ +H  + ++GL  NV V ++++ +Y K   ++ A        
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAA------- 392

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                    +F ++  R +VSWNAMI G++Q GR  +A+N F +
Sbjct: 393 ------------------------SMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQ 428

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M    + P+  T    I A A ++     K  H   ++     +VFV  +L+  YAKCG+
Sbjct: 429 MRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGA 488

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  + L+FD ++ER++ TWNA+I GY  +G G+ A+E FE M+   I+PNGVT L ++ A
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H+GLVE G   F   K      L  +HY  MVDLL R+GR  EA +F+  +P  P + 
Sbjct: 549 CSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            + A+LG CQIH NV   E AA R+  L+P+D   +V+L+N    A  W+ V  +R  M 
Sbjct: 609 VYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSML 668

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            +G+ + PGCS +EIK++VH F +G   H  + +IYA L      I+E
Sbjct: 669 RQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKE 716



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 186/363 (51%), Gaps = 39/363 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +P+ ++VS  TI+  +++      A+ +   M   N++PS  T  SV+P+ +AL 
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +++GK++H +A + G  S V + +A++D+Y K                          C
Sbjct: 251 LISVGKEIHGYAMRSGFDSLVNISTALVDMYAK--------------------------C 284

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G L     E A +LF  M  RNVVSWN+MI  Y Q    +EA+ +F +ML EG+ P   +
Sbjct: 285 GSL-----ETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +  A+ A A++  L  G+  H  +V+     +V V NSLIS Y KC  ++ +  +F KL 
Sbjct: 340 VMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQ 399

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
            R +V+WNA+I G+AQNGR  +A+ +F +MR   ++P+  T + ++ A     +      
Sbjct: 400 SRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKW 459

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            +    ++ L+    +       +VD+ ++ G    A+  ++D+  +  +  W A++ G 
Sbjct: 460 IHGVVMRSCLDKNVFVT----TALVDMYAKCGAIMIAR-LIFDMMSERHVTTWNAMIDGY 514

Query: 420 QIH 422
             H
Sbjct: 515 GTH 517



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 150/299 (50%), Gaps = 33/299 (11%)

Query: 63  QVFDEV-PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VF+ +   LNV+  T + G FAK    ++A+  F RM   ++ P  + F  ++      
Sbjct: 90  RVFEPIDSKLNVLYHTMLKG-FAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDE 148

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            +L +GK++H    K G   ++F  + + ++Y K   + EA +VF+              
Sbjct: 149 AELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD-------------- 194

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                             MP R++VSWN ++ GYSQ G    A+ +   M  E L P+  
Sbjct: 195 -----------------RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFI 237

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A + +  + +GK  H  A++      V +  +L+  YAKCGS+E +  +FD +
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            ERN+V+WN++I  Y QN   +EA+  F++M   G++P  V+++G L AC   G +E+G
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 141/319 (44%), Gaps = 35/319 (10%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +Q+     K GL    F  + ++ L+ +  S++EA RVFE   +   V Y TM+      
Sbjct: 54  RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML------ 107

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                                     G+++    ++A+  F+ M  + + P        +
Sbjct: 108 -------------------------KGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLL 142

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
               + A L +GK  H   VK    LD+F    L + YAKC  + ++  VFD++ ER++V
Sbjct: 143 KVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLV 202

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +WN ++ GY+QNG    A+E  + M    ++P+ +T++ +L A +   L+  G      A
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
                  L     A +VD+ ++ G  + A++ L+D   +  +  W +++     + N + 
Sbjct: 263 MRSGFDSLVNISTA-LVDMYAKCGSLETARQ-LFDGMLERNVVSWNSMIDAYVQNENPKE 320

Query: 428 GEFAARRIL--ALDPEDVS 444
                +++L   + P DVS
Sbjct: 321 AMLIFQKMLDEGVKPTDVS 339


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 176/585 (30%), Positives = 300/585 (51%), Gaps = 82/585 (14%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL +C  +L L K  ++H L      E+            + T  +S  ++  +  + ++
Sbjct: 151 LLQLCGENLDLKKGREIHGLIITNGFESN---------LFVMTAVMSLYAKCRQIDNAYK 201

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+ +   ++VS TT++  +A+  H + A+ L  +M     +P   T  S++P+   ++ 
Sbjct: 202 MFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKA 261

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L +G+ +H +A + G +S V V +A+LD+Y K  S   A  VF+   +  VVS+ TMI G
Sbjct: 262 LRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDG 321

Query: 184 LLKRERFEDALKLFQEM------PHR---------------------------------N 204
             +    E+A   F +M      P R                                 N
Sbjct: 322 CAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSN 381

Query: 205 VVSWNAMIGGYS------------------------------QTGRNEEAVNLFIEMLRE 234
           V   N++I  YS                              Q G  +EA+NLF  M  +
Sbjct: 382 VSVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQ 441

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+  +  TL   I A A+ +     K  H  AV+     +VFV  +L+  YAKCG+++ +
Sbjct: 442 GIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTA 501

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             +FD + ER+++TWNA+I GY  +G G+E ++ F  M+   ++PN +T L ++ AC+H+
Sbjct: 502 RKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHS 561

Query: 355 GLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           G VE+G   F    +++   L+P  +HY+ MVDLL R+G+  +A  F+ ++P  PGI   
Sbjct: 562 GFVEEGLLLFKS--MQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVL 619

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            A+LG C+IH NVELGE AA+++  LDP++   +V+L+N  +    WD V+ +R  M++K
Sbjct: 620 GAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDK 679

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           G+ + PGCSW+E+++++H F +G  NH  + +IYA L +  ++I+
Sbjct: 680 GLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIK 724



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 151/304 (49%), Gaps = 33/304 (10%)

Query: 59  SSVHQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           S   +VF+ V   L+V+    + G +AK     +A+  F RM+   +R     +  ++  
Sbjct: 96  SEAARVFEHVELKLDVLYHIMLKG-YAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQL 154

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                DL  G+++H      G +SN+FV +A++ LY K   I+                 
Sbjct: 155 CGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQID----------------- 197

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                         +A K+F+ M H+++VSW  ++ GY+Q G  + A+ L ++M   G  
Sbjct: 198 --------------NAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQK 243

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  TL   + A A++ AL +G+S H  A +   +  V V N+L+  Y KCGS   + LV
Sbjct: 244 PDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLV 303

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F  +  + +V+WN +I G AQNG  EEA   F +M   G  P  VT++G+L AC + G +
Sbjct: 304 FKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDL 363

Query: 358 EKGY 361
           E+G+
Sbjct: 364 ERGW 367



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 34/238 (14%)

Query: 116 PSSTALEDLNLGKQLHA---WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           PS   LE+    K+L+    +  K G  +     + ++ L+ K  S  EA RVFE     
Sbjct: 49  PSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELK 108

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
             V Y  M+ G  K     DAL  F  M    V     ++G Y+                
Sbjct: 109 LDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEV---RLVVGDYA---------------- 149

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
                       C +        L  G+  H   +    + ++FV  +++S YAKC  ++
Sbjct: 150 ------------CLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQID 197

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++  +F+++  +++V+W  ++ GYAQNG  + A++   +M+  G +P+ VTL+ +L A
Sbjct: 198 NAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPA 255


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 174/483 (36%), Positives = 262/483 (54%), Gaps = 43/483 (8%)

Query: 46  TDSVSCG------SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           TD+++C       ++  +      VFD +   ++VS  T+I  +       +A+ LFSRM
Sbjct: 90  TDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRM 149

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
                  SEFT  S I +  A   +N  KQLH  A K+ L SN FVG+AILD+Y K    
Sbjct: 150 HREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAK---- 205

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
                                 C ++K     DA  +F++MP R +V+W+++  GY Q G
Sbjct: 206 ----------------------CNMIK-----DACWVFEKMPERTLVTWSSLFAGYVQNG 238

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
            +EEA++LF    REG+     TL   + A A++A    G   HA  +K     + FV  
Sbjct: 239 LHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAA 298

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           SL+  YA+CG +E +  +F  +  +N+V WNA+I  ++++    EA+  FE+M+  GI P
Sbjct: 299 SLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFP 358

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           N VT L +L  C+H GLVEKG  YFS     +  +P +L   HY+CMVD+L RSG+  EA
Sbjct: 359 NEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVL---HYSCMVDVLGRSGKTDEA 415

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
            E L  +PF+P    W +LLG C+ ++N+ L   AA ++  L+P++  ++V+LSN  + +
Sbjct: 416 WELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAAS 475

Query: 457 GKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           G W+NV   R+ +K+ G  +  G SWIE K KVHVFV G+R H    +IY  L     ++
Sbjct: 476 GNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEM 535

Query: 517 REF 519
           R+F
Sbjct: 536 RKF 538


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 160/458 (34%), Positives = 267/458 (58%), Gaps = 32/458 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYE-EAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VFD +P  NV+S T II  + +    + EAI LF  M+   ++P+ FTF SV+ +   L
Sbjct: 204 KVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANL 263

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D+ LG+Q++A   K+ L S   VG++++ +Y +  ++E A + F+              
Sbjct: 264 SDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFD-------------- 309

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                         LF+    +N+VS+N ++  Y+++  +EEA  LF E+   G   N  
Sbjct: 310 -------------VLFE----KNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAF 352

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    +  A++I A+G G+  H+  +K   K ++ + N+LIS Y++CG++E +  VF+++
Sbjct: 353 TFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEM 412

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            + N+++W ++I G+A++G    A+E F +M   G+ PN VT + +L AC+H GL+ +G 
Sbjct: 413 GDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGL 472

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            +F   K+E   + + EHYAC+VDLL RSG  +EA E +  +PF       +  LG C++
Sbjct: 473 KHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRV 532

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N++LG+ AA  IL  DP D ++Y++LSN  + AG+W+ V+ IR++MKE+ +T+  GCS
Sbjct: 533 HGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCS 592

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           WIE+++KVH F  GD +H    EIY  L     +I+E 
Sbjct: 593 WIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKEL 630



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 198/400 (49%), Gaps = 45/400 (11%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S ++VFD +PD NVV+ T +I RF +     +A+ LF  M+L    P  FT   V+ +  
Sbjct: 97  SAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACA 156

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL---SSIEEATRVFEDTHNPNVVS 176
            +  L+LG+Q H    K GL  +V VG +++D+Y K     S+++A +VF+     NV+S
Sbjct: 157 EMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMS 216

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR-NEEAVNLFIEMLREG 235
           +T                               A+I GY Q+G  + EA+ LF+EM++  
Sbjct: 217 WT-------------------------------AIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDS 294
           + PNH T    + A AN++ + +G+  +A  VK  L  ++  VGNSLIS Y++CG+ME++
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINC-VGNSLISMYSRCGNMENA 304

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
              FD L E+N+V++N ++  YA++   EEA E F  +   G   N  T   LL   +  
Sbjct: 305 RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSI 364

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           G + KG    S  ++   G  K   + C  ++ + SR G  + A +   ++  D  +  W
Sbjct: 365 GAIGKGEQIHS--RILKSG-FKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISW 420

Query: 413 KALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLS 450
            +++ G   H  +   L  F       + P +V+   +LS
Sbjct: 421 TSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLS 460



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 177/347 (51%), Gaps = 45/347 (12%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++VS + +I  +A      EAI  F  ML     P+E+ F  V  + +  E+++LGK + 
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIF 65

Query: 132 AWATKVG-LQSNVFVGSAILDLYIKLS-SIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
            +  K G  +S+V VG A++D+++K +  +E A +VF+   + NVV++T MI       R
Sbjct: 66  GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMI------TR 119

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
           F+                         Q G + +AV+LF++M+  G VP+  TL   + A
Sbjct: 120 FQ-------------------------QLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSA 154

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC---GSMEDSLLVFDKLTERNI 306
            A +  L +G+ FH   +K    LDV VG SL+  YAKC   GS++D+  VFD++   N+
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214

Query: 307 VTWNAVICGYAQNGRGE-EAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYS 362
           ++W A+I GY Q+G  + EAIE F  M    ++PN  T   +L AC +     L E+ Y+
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
              + +L     +       ++ + SR G  + A++  +D+ F+  +
Sbjct: 275 LVVKMRLASINCVGNS----LISMYSRCGNMENARK-AFDVLFEKNL 316



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 9/222 (4%)

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           R++VSW+A+I  Y+   +  EA++ F +ML  G  PN         A +N   + +GK  
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 263 HACAVKF-LGKLDVFVGNSLISFYAKC-GSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
               +K    + DV VG +LI  + K  G +E +  VFD++ +RN+VTW  +I  + Q G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
              +A++ F  M ++G  P+  TL G++ AC   GL+  G  +     +   G+      
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQF--HCLVMKSGLDLDVCV 182

Query: 381 AC-MVDLLSR---SGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            C +VD+ ++    G   +A++    +P    +  W A++ G
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVH-NVMSWTAIITG 223


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  300 bits (769), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 265/491 (53%), Gaps = 42/491 (8%)

Query: 20  LHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTI 79
           +H+    Y  ET  A    L T  ++   V  G+         ++++ + D +++S    
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGT---------KLYESMVDRDLISWNAY 487

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           +        Y+  + +F  ML     P+ +TF S++ S + L D++ G+Q+HA   K  L
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQL 547

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
             N FV +A++D+Y K                          C  L     EDA   F  
Sbjct: 548 DDNNFVCTALIDMYAK--------------------------CMYL-----EDADVAFNR 576

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           +  R++ +W  +I  Y+QT + E+A+N F +M +EG+ PN  TL   +   +++A+L  G
Sbjct: 577 LSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG 636

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           +  H+   K     D+FVG++L+  YAKCG ME++  +F+ L  R+ + WN +ICGYAQN
Sbjct: 637 QQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQN 696

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-E 378
           G+G +A+  F  M   GI P+GVT  G+L AC+H GLVE+G  +F+ +   D G+    +
Sbjct: 697 GQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFN-SMYRDFGISPTVD 755

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           H ACMVD+L R G+F E ++F+  +        W+ +LG  ++H+N+ LGE AA ++  L
Sbjct: 756 HCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFEL 815

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
            PE+ SSY++LSN  +  G+WD+V  +R  M  KG+ + PGCSW+E   +VH FV+ D +
Sbjct: 816 QPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYS 875

Query: 499 HHMNDEIYAVL 509
           H    EI+  L
Sbjct: 876 HPQIQEIHLKL 886



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 151/299 (50%), Gaps = 31/299 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           V  ++PD +VVS T +I     +    ++IYLF  M    I P+EFT  + + + +    
Sbjct: 169 VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMA 228

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+LGKQ+HA A K+GL  ++FVGSA++DLY K   IE A+                    
Sbjct: 229 LDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELAS-------------------- 268

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                      K+F  MP +N V+WN ++ GY+Q G     + LF  M+   +  N  TL
Sbjct: 269 -----------KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTL 317

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   AN   L  G+  H+  +K   + + F+G  L+  Y+KCG   D++ VF  + +
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +IV W+A+I    Q G+ EE+I+ F  MR+    PN  T+  LL A  +TG ++ G S
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQS 436



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 143/290 (49%), Gaps = 31/290 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F  +P+ N V+   ++  +A++      + LF  M+ L+++ +EFT  +V+      +
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSK 328

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +L  G+ +H+   K G + N F+G  ++D+Y K                          C
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSK--------------------------C 362

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL       DA+ +F+ +   ++V W+A+I    Q G++EE++ LF  M     +PN  T
Sbjct: 363 GLAI-----DAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYT 417

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + AA N   L  G+S HAC  K+  + DV V N+L++ Y K G + D   +++ + 
Sbjct: 418 ICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMV 477

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           +R++++WNA + G    G  +  +  F  M   G  PN  T + +L +C+
Sbjct: 478 DRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 128/253 (50%), Gaps = 4/253 (1%)

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           + +D  NP+   + +++    K      A  +  +MP R+VVSW A+I G    G   ++
Sbjct: 138 IVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDS 197

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           + LF EM  EG++PN  TL   + A +   AL +GK  HA A K    LD+FVG++L+  
Sbjct: 198 IYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDL 257

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YAKCG +E +  +F  + E+N VTWN ++ GYAQ G     ++ F  M    ++ N  TL
Sbjct: 258 YAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTL 317

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDL 403
             +L  C ++  +++G    S   +   G    E   C +VD+ S+ G   +A      +
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSL--IIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTI 375

Query: 404 PFDPGIGFWKALL 416
              P I  W AL+
Sbjct: 376 K-KPDIVVWSALI 387



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A+  +LG+ K+ H   VK +   D  +  SL++ YAKC     + LV  K+ +R++V+W 
Sbjct: 123 ASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWT 182

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-KL 369
           A+I G    G   ++I  F+ M+  GI PN  TL   L AC+    ++ G    +QA KL
Sbjct: 183 ALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKL 242

Query: 370 EDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              G+L      + +VDL ++ G  + A +    +P    +  W  LL G
Sbjct: 243 ---GLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVT-WNVLLNG 288


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 265/469 (56%), Gaps = 35/469 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D+   V ++F E+P+L+ +S   +I  +A    ++E+  LF ++        +F F 
Sbjct: 287 SKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFA 346

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  +T+  +L +G+Q+H  A  VG      V +A++D+Y K +  +EA ++F++    
Sbjct: 347 TLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDN---- 402

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                  + C                    ++ V W AMI  Y Q G++EE +N+F +M 
Sbjct: 403 -------IAC--------------------KSTVPWTAMISAYVQKGKHEEGINVFSDMR 435

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R G+  + +T    + A AN+A++ +G+  H+  ++     +V+ G++L+  YAKCG M 
Sbjct: 436 RTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMT 495

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D++  F ++ ERN V+WNA+I  YAQNG  +  +  F++M  +G +P+ V+ L +L AC+
Sbjct: 496 DAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACS 555

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H G VE+   +F+          K EHY  MVD+L R+GRF EA++ + ++PF+P    W
Sbjct: 556 HCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMW 615

Query: 413 KALLGGCQIHSNVELGEFAARRILAL-DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
            ++L  C+IH N EL + AA R+  + D  D + Y+ +SN  +VAG+WDNV+ +++ M++
Sbjct: 616 SSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRD 675

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           +G+ +VP  SW+EIK + HVF   D++H    E+  +LR      +E E
Sbjct: 676 RGVRKVPAYSWVEIKHQTHVFSANDKSH---PEMKKILRKINALSKEME 721



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 180/409 (44%), Gaps = 43/409 (10%)

Query: 51  CGSESDKFSSVH------QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104
           C S  D +   H      Q+F  + + + V+  +++  ++ +   EEAI LF  +    I
Sbjct: 178 CNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGI 237

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           +PS+FTF +++ ++  L+D   G+Q+H +  K     NVFVG+A+LD Y K   ++E   
Sbjct: 238 KPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVG- 296

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
                                         KLF EMP  + +S+N +I  Y+  G+ +E+
Sbjct: 297 ------------------------------KLFXEMPELDGISYNVVITSYAWNGQFKES 326

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
            +LF ++               +  A +   L MG+  H  A+      +  V N+L+  
Sbjct: 327 FDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDM 386

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YAKC   +++  +FD +  ++ V W A+I  Y Q G+ EE I  F  MR  G+  +  T 
Sbjct: 387 YAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATF 446

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDL 403
             +L AC +   +  G    S   L   G +   +  + ++D  ++ G   +A +   ++
Sbjct: 447 ASILRACANLASISLGRQLHSL--LIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEM 504

Query: 404 PFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
           P    +  W AL+     + NV+  L  F         P+ VS   +LS
Sbjct: 505 PERNSVS-WNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 157/327 (48%), Gaps = 35/327 (10%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           CRS+  +N   +   L   + +  Q  +   +    + +  +  G    K S   ++FD 
Sbjct: 44  CRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFG----KLSKARELFDG 99

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           + +   VS T +IG + + +  +EA  L++ M    I P   T  +++     LE  N+ 
Sbjct: 100 MVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVI 159

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            Q+H    K+G + N+ V ++++D Y K             TH           C  L  
Sbjct: 160 VQIHTHVIKLGYEYNLMVCNSLVDAYCK-------------TH-----------CLYL-- 193

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                A +LF+ M +++ V++N+++ GYS  G NEEA+ LF+E+   G+ P+  T    +
Sbjct: 194 -----ASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALL 248

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            AA  +     G+  H   +K     +VFVGN+L+ +Y+K   +++   +F ++ E + +
Sbjct: 249 SAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGI 308

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRI 334
           ++N VI  YA NG+ +E+ + F +++ 
Sbjct: 309 SYNVVITSYAWNGQFKESFDLFRKLQF 335



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 112/227 (49%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN    + A   K G   N    +  ++ +++   +  A +VF+     N +S   MI G
Sbjct: 24  LNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISG 83

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            LK  +   A +LF  M  R  VSW  +IGGY Q+ +++EA  L+ +M R G+ P++ TL
Sbjct: 84  HLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTL 143

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +     +    +    H   +K   + ++ V NSL+  Y K   +  +  +F  +  
Sbjct: 144 VTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLN 203

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++ VT+N+++ GY+  G  EEAIE F  +  +GI+P+  T   LL A
Sbjct: 204 KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA 250


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 155/425 (36%), Positives = 245/425 (57%), Gaps = 4/425 (0%)

Query: 96  FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
           F  M+   + P+  T+ +V+ +    + + LG Q+H      G+  ++ VG+A++D+Y +
Sbjct: 111 FVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAE 170

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
            S ++ A  +FE     N VS+T++I G L+  + + A  LF  MP R+ VSW AMI GY
Sbjct: 171 CSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGY 230

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
            Q G+  EA+ +F EM    +  +  T+   + A A + AL  G+       +   K+D 
Sbjct: 231 VQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDT 290

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           FVGN+L+  Y+KCGS++ +L VF ++  R+  TW AVI G A NG GEEAI  F RM   
Sbjct: 291 FVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRV 350

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRF 393
              P+ VT +G+L AC H GLV+KG  +F    +     + P   H+ C++DLL R+G+ 
Sbjct: 351 FEAPDEVTFIGVLTACTHAGLVDKGRDFF--LSMTGSYGIAPNVMHFGCLIDLLGRAGKL 408

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
           KEA E + ++P  P    W  LL  C++H N E+G+ AA  +L LD E+   Y++LSN  
Sbjct: 409 KEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLY 468

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           + + +W++V  +R+ + EKG+ + PGCS IE+   +H F+ GDR+H M+ EIY+ L    
Sbjct: 469 AKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVL 528

Query: 514 EQIRE 518
             +++
Sbjct: 529 TDLKD 533



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 146/339 (43%), Gaps = 71/339 (20%)

Query: 95  LFSRMLLLNIRPSEFTFGSVIPSSTAL-EDLNLGKQLHAWATKVGLQSNVFVGSAILDLY 153
           ++  ML    RP  +TF  ++ + TA  E   +G  +HA   K G++ N  V S+++ +Y
Sbjct: 5   VYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMY 64

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR---NVVSWNA 210
                   A R          V+ T                 L    P R     V WNA
Sbjct: 65  --------AAR------GDGAVART-----------------LLDAWPARGGDTPVVWNA 93

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           +I G+ ++ +   +   F++M+R G+VP   T    + A      + +G   H C V   
Sbjct: 94  LISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASG 153

Query: 271 GKLDVFVGNSLISFYAKC-------------------------------GSMEDSLLVFD 299
              D+ VGN+LI  YA+C                               G ++ +  +FD
Sbjct: 154 VLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFD 213

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + ER+ V+W A+I GY Q G+  EA+E F  M+ + +R +  T++ ++ AC   G +E 
Sbjct: 214 CMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALET 273

Query: 360 GYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEA 396
           G   +++  +   G +K + +    +VD+ S+ G  ++A
Sbjct: 274 G--EWARIYMSRHG-IKMDTFVGNALVDMYSKCGSIQQA 309



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 114/269 (42%), Gaps = 33/269 (12%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +      +FD +P+ + VS T +I  + +   + EA+ +F  M    +R  EFT  SV+ 
Sbjct: 204 QVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVT 263

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L  G+    + ++ G++ + FVG+A++D+Y K  SI++A  VF++ +  +  +
Sbjct: 264 ACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFT 323

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +T +I GL                               +  G  EEA+N+F  MLR   
Sbjct: 324 WTAVILGL-------------------------------AVNGHGEEAINMFYRMLRVFE 352

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSL 295
            P+  T    + A  +   +  G+ F        G   +V     LI    + G ++++L
Sbjct: 353 APDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEAL 412

Query: 296 LVFDKLTER-NIVTWNAVICGYAQNGRGE 323
                +  R N   W  ++     +G  E
Sbjct: 413 ETIGNMPMRPNSAIWGTLLAACRVHGNSE 441



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 109/258 (42%), Gaps = 25/258 (9%)

Query: 225 VNLFIEMLREGLVPNHSTLPC---AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           + +++ ML  G  P+  T P    A+ AAA   A+G   + HA  VKF  +L+  V +SL
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVG--DAVHAHVVKFGMELNAHVASSL 60

Query: 282 ISFYAKCGSMEDSLLVFDKLTER---NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           +  YA  G    +  + D    R     V WNA+I G+ ++ +   +   F  M   G+ 
Sbjct: 61  VLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVV 120

Query: 339 PNGVTLLGLLWACNHTGLVEKGYS----YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           P  VT + +L AC     +  G        +   L D   LK  +   ++D+ +      
Sbjct: 121 PTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPD---LKVGN--ALIDMYAECSEMD 175

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF-AARRILALDPE-DVSSYVMLSNA 452
            A E    +     +  W +++ G      + LG+   AR +    PE D  S+  + + 
Sbjct: 176 AAWELFEGMEVRNTVS-WTSVISGF-----LRLGQVDQARTLFDCMPERDTVSWTAMIDG 229

Query: 453 LSVAGKWDNVSNIRREMK 470
              AG++     + REM+
Sbjct: 230 YVQAGQFREALEMFREMQ 247


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/502 (31%), Positives = 268/502 (53%), Gaps = 49/502 (9%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS      +  +VFD +   +VV  T++I  F +   +E A     +ML   ++P+E T
Sbjct: 162 CGS----LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHT 217

Query: 111 FGSVIPSSTALEDLNLGKQLHAW-ATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFED 168
             +++ +   +    LG+Q+H +   K+GL+S +V+  +A++D Y +   ++        
Sbjct: 218 MTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDP------- 266

Query: 169 THNPNVVSYTTMICG----------------LLKRERFEDAL--------------KLFQ 198
             N   +S     CG                L+   R  +AL               +  
Sbjct: 267 --NEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLN 324

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           ++ + ++VSW   I    Q G  E+A+ L  +M  EG  PN       + + A++A+L  
Sbjct: 325 KIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQ 384

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G  FH  A+K     ++  GN+LI+ Y+KCG M  + L FD +   ++ +WN++I G+AQ
Sbjct: 385 GMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQ 444

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +G   +A+E F +MR NGI+P+  T LG+L  CNH+G+VE+G  +F     +      P 
Sbjct: 445 HGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPS 504

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           HYACM+D+L R+GRF EA   + D+PF+P    WK LL  C++H N+++G+ AA R++ L
Sbjct: 505 HYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMEL 564

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
              D +SYV++SN  ++ G+W++   +RR M E G+ +  GCSWIEI ++VH F + D +
Sbjct: 565 SDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMS 624

Query: 499 HHMNDEIYAVLRSCTEQIREFE 520
           H  +D IY +L      +++F+
Sbjct: 625 HPNSDSIYQMLGELVAVMQDFD 646



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 193/417 (46%), Gaps = 37/417 (8%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S + +    +FD +P  NVV+ T+++    +    E A+ +F+ M+   + P++F   +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + +   L  L  G+Q+H+ A + G   + ++GS ++++Y +  S+  A  VF+   +P+
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEM------PHRNVVS---------WNAMIGGY--S 216
           VV YT++I    +   FE A +   +M      P+ + ++             I GY   
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 217 QTGRNEEAVNLFIEML-----REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           + G   ++V     ++      EG+ PN   L   + A  +I   G+G+  H  A+K   
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSI---GLGRQLHCSAIKHDL 296

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
             D+ V N+L+S Y + G +E+   + +K+   ++V+W   I    QNG GE+AI    +
Sbjct: 297 ITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQ 356

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC----MVDLL 387
           M   G  PNG     +L +C     +++G  +   A       L  +   C    ++++ 
Sbjct: 357 MHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLAL-----KLGCDSEICTGNALINMY 411

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPED 442
           S+ G+   A+   +D+     +  W +L+ G   H  +N  L  F+  R   + P+D
Sbjct: 412 SKCGQMGSAR-LAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDD 467



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 106/181 (58%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P+VV     +  L+K  R  DAL LF  MP +NVV+W +++ G ++ GR E A+ +F +
Sbjct: 45  SPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFAD 104

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+  G+ PN      A++A A++ AL  G+  H+ AV+     D ++G+ LI  Y++CGS
Sbjct: 105 MVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGS 164

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  VFD++   ++V + ++I  + +NG  E A E   +M   G++PN  T+  +L A
Sbjct: 165 LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTA 224

Query: 351 C 351
           C
Sbjct: 225 C 225



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           DV +    ++   K G + D+L +FD++  +N+V W +V+ G  +NGR E A+  F  M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMV 106

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
            +G+ PN       L AC   G +  G   +S   +A       +     +C++++ SR 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIG----SCLIEMYSRC 162

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDVSSYVM 448
           G    AKE ++D    P +  + +L+     +   EL   A  ++L   L P + +   +
Sbjct: 163 GSLPAAKE-VFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTI 221

Query: 449 LSNALSVAGK 458
           L+    V G+
Sbjct: 222 LTACPRVLGQ 231


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 171/529 (32%), Positives = 269/529 (50%), Gaps = 76/529 (14%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +P+ ++VS  TI+  +++      A+ + + M   N++PS  T  SV+P+ +AL 
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALR 250

Query: 123 DLNLGKQLHAWATKVG-------------------------------LQSNVFVGSAILD 151
            + +GK++H +A + G                               L+ NV   ++++D
Sbjct: 251 LIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMID 310

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL---------KRERF------------ 190
            Y++  + +EA  +F+   +  V      + G L         +R RF            
Sbjct: 311 AYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDR 370

Query: 191 ------------------EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                             + A  +F ++  R +VSWNAMI G++Q GR  EA+N F +M 
Sbjct: 371 NVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQ 430

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              + P+  T    I A A ++     K  H   ++     +VFV  +L+  YAKCG++ 
Sbjct: 431 ARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIM 490

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            + L+FD ++ER++ TWNA+I GY  +G G+ A+E FE M+   IRPNGVT L ++ AC+
Sbjct: 491 IARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACS 550

Query: 353 HTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H+GLVE G   F   K     +P M   +HY  MVDLL R+GR  EA +F+  +P  P +
Sbjct: 551 HSGLVEAGLKCFHMMKENYSIEPSM---DHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             + A+LG CQIH NV   E  A R+  L+PED   +V+L+N    A  W+ V  +R  M
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
             +G+ + PGCS +EIK++VH F +G   H  + +IYA L     QI+E
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKE 716



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 150/299 (50%), Gaps = 33/299 (11%)

Query: 63  QVFDEV-PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VF+ +   LNV+  T + G FAK    ++A+  F RM    + P  + F  ++      
Sbjct: 90  RVFEPIDKKLNVLYYTMLKG-FAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDE 148

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            +L +GK++H    K G   ++F  + + ++Y K   + EA +VF+              
Sbjct: 149 AELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFD-------------- 194

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                             MP R++VSWN ++ GYSQ G    A+ +   M  E L P+  
Sbjct: 195 -----------------RMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFI 237

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A + +  + +GK  H  A++      V +  +L+  YAKCGS++ + L+FD +
Sbjct: 238 TIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGM 297

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            ERN+V+WN++I  Y QN   +EA+  F++M   G++P  V+++G L AC   G +E+G
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 41/314 (13%)

Query: 136 KVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALK 195
           K GL       + ++ L+ +  S++EA RVFE       V Y TM+ G  K    + ALK
Sbjct: 62  KNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALK 121

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
            F  M                   R++E          E +V N + L   +    + A 
Sbjct: 122 FFVRM-------------------RDDEV---------EPVVYNFTYL---LKVCGDEAE 150

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           L +GK  H   VK    LD+F    L + YAKC  + ++  VFD++ ER++V+WN ++ G
Sbjct: 151 LRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAG 210

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDP 372
           Y+QNG    A+E    M    ++P+ +T++ +L A +   L+  G   + Y  +A  +  
Sbjct: 211 YSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSL 270

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
             +       +VD+ ++ G  K A+  L+D   +  +  W +++     + N +      
Sbjct: 271 VNIA----TALVDMYAKCGSLKTAR-LLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIF 325

Query: 433 RRIL--ALDPEDVS 444
           +++L   + P DVS
Sbjct: 326 QKMLDEGVKPTDVS 339


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 252/448 (56%), Gaps = 33/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +P  ++V    +I   +    + EA+ LF RM       +  T  +V+ S+ +LE
Sbjct: 359 KVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLE 418

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            ++  +Q+HA A K+G  S+  V + ++D Y K   +  A RVFE   + +++++T+   
Sbjct: 419 AISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTS--- 475

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                       MI   SQ    E+A+ LF+EMLR+GL P+   
Sbjct: 476 ----------------------------MITALSQCDHGEDAIKLFMEMLRKGLDPDPFV 507

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+++A   GK  HA  +K     DVF GN+L+  YAKCGS+ED+ L F  L 
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP 567

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+ +V+W+A+I G AQ+G G+ A++ F RM    I PN +T+  +L ACNH GLV++   
Sbjct: 568 EKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKR 627

Query: 363 YFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF+  K E  G+ +  EHYACM+DLL R+G+  +A E +  +PF      W ALL   ++
Sbjct: 628 YFNSMK-EMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRV 686

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + ELG  AA ++  L+PE   ++V+L+N  + AG WD+V+ +R+ MK+  + + P  S
Sbjct: 687 HRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMS 746

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           W+E+K KVH F+ GD++H    +IYA L
Sbjct: 747 WVELKDKVHTFIVGDKSHPRARDIYAKL 774



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 169/363 (46%), Gaps = 41/363 (11%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  +VFDE+PD   VS ++++  ++      +A+  F  M   ++R +EF    V+  + 
Sbjct: 55  SARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAP 114

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              D   G QLHA A   GL  ++FV +A++ +Y     ++EA  VF++           
Sbjct: 115 ---DAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAG--------- 162

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             C                    RN VSWN ++  Y +  R   AV +F EM+  G+ PN
Sbjct: 163 --C-------------------ERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPN 201

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                C + A      L  G+  HA  ++     DVF  N+L+  Y+K G +  + +VF 
Sbjct: 202 EFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFG 261

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           K+ E ++V+WNA I G   +G  + A+E   +M+ +G+ PN  TL  +L AC  +G    
Sbjct: 262 KVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNL 321

Query: 360 G---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G   + +  +A  +    +       +VD+ ++ G   +AK+ ++D      +  W AL+
Sbjct: 322 GRQIHGFMVKANADSDNYIAFG----LVDMYAKHGLLDDAKK-VFDWIPQRDLVLWNALI 376

Query: 417 GGC 419
            GC
Sbjct: 377 SGC 379



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 136/286 (47%), Gaps = 32/286 (11%)

Query: 64  VFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           VFDE   + N VS   ++  + K      A+ +F  M+   ++P+EF F  V+ + T   
Sbjct: 157 VFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSR 216

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL  G+++HA   + G   +VF  +A++D+Y KL  I  A  VF                
Sbjct: 217 DLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVF---------------- 260

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                           ++P  +VVSWNA I G    G ++ A+ L ++M   GLVPN  T
Sbjct: 261 ---------------GKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFT 305

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A   A  +G+  H   VK     D ++   L+  YAK G ++D+  VFD + 
Sbjct: 306 LSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIP 365

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           +R++V WNA+I G +   +  EA+  F RMR  G   N  TL  +L
Sbjct: 366 QRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 166/367 (45%), Gaps = 45/367 (12%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF +VP+ +VVS    I       H + A+ L  +M    + P+ FT  S++ +      
Sbjct: 259 VFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGA 318

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            NLG+Q+H +  K    S+ ++   ++D+Y K                           G
Sbjct: 319 FNLGRQIHGFMVKANADSDNYIAFGLVDMYAKH--------------------------G 352

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           LL     +DA K+F  +P R++V WNA+I G S   ++ EA++LF  M +EG   N +TL
Sbjct: 353 LL-----DDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTL 407

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + A++ A+   +  HA A K     D  V N LI  Y KC  +  +  VF+K   
Sbjct: 408 AAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGS 467

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            +I+ + ++I   +Q   GE+AI+ F  M   G+ P+   L  LL AC          S 
Sbjct: 468 YDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC-------ASLSA 520

Query: 364 FSQAKLEDPGMLKPEHYA------CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           + Q K     ++K +  +       +V   ++ G  ++A      LP + G+  W A++G
Sbjct: 521 YEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIG 579

Query: 418 GCQIHSN 424
           G   H +
Sbjct: 580 GLAQHGH 586



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 8/234 (3%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A ++F E+P    VSW++++  YS      +A+  F  M    +  N   LP  +  A +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPD 115

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNA 311
               G G   HA A+      D+FV N+L++ Y   G ++++ +VFD+   ERN V+WN 
Sbjct: 116 A---GFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNG 172

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           ++  Y +N R   A++ F  M   G++PN      ++ AC  +  +E G      A +  
Sbjct: 173 LMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKV--HAMVIR 230

Query: 372 PGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            G  K    A  +VD+ S+ G  + A      +P +  +  W A + GC +H +
Sbjct: 231 TGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFISGCVLHGH 283



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 35/263 (13%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           + D  +  ++VF++    ++++ T++I   ++  H E+AI LF  ML   + P  F   S
Sbjct: 451 KCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSS 510

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++ +  +L     GKQ+HA   K    S+VF G+A++  Y K  SIE+A   F       
Sbjct: 511 LLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKG 570

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS++ MI                               GG +Q G  + A+++F  M+ 
Sbjct: 571 VVSWSAMI-------------------------------GGLAQHGHGKRALDVFHRMVD 599

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG--KLDVFVGNSLISFYAKCGSM 291
           E + PNH T+   + A  +   +   K +     +  G  + +      +I    + G +
Sbjct: 600 EHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYA-CMIDLLGRAGKL 658

Query: 292 EDSLLVFDKLT-ERNIVTWNAVI 313
           +D++ + + +  + N   W A++
Sbjct: 659 DDAMELVNSMPFQTNAAVWGALL 681



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A   +L  G   HA  +K  G   VF  N L+SFY+KC     +  VFD++ +   V+W+
Sbjct: 15  AATQSLLQGAHIHAHLLKS-GLFAVF-RNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWS 72

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           +++  Y+ N    +A+  F  MR   +R N   L
Sbjct: 73  SLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVL 106


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/507 (34%), Positives = 265/507 (52%), Gaps = 48/507 (9%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C+  S L L K  ++HS    ++I  Q  +   +ET AI    V CG           VF
Sbjct: 198 CLGPSFLELGK--QIHS----HVIRAQLNANITVET-AICNMYVRCG----WLEGAKLVF 246

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           D +   N V+ T ++  + +    E A+ LF+RM +  +   EF F  V+     LED +
Sbjct: 247 DGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWD 306

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           +G+Q+H+   K+G +S V VG+ ++D Y+K   IE A R F     PN VS         
Sbjct: 307 MGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVS--------- 357

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                                 W+A+I G+SQ+GR E+ + +F  +  EG+V N      
Sbjct: 358 ----------------------WSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTS 395

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS-LISFYAKCGSMEDSLLVFDKLTER 304
              A A  A L MG   H  A+K  G +    G S +++ Y+KCG ++ +   F+ + E 
Sbjct: 396 VFQACAAQANLNMGSQAHGDAIK-RGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEP 454

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           + V W A+I GYA +G   EA+ FF RM+  G+RPN VT + +L AC+H+GLV +   Y 
Sbjct: 455 DAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYL 514

Query: 365 SQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                 D G +KP  +HY CM+D  SR+G  +EA E +  +PF+P    WK+LLGGC  H
Sbjct: 515 GSMS-RDYG-VKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAH 572

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            +++LG+ AA  +  LDP D + Y++L N  S  GKW+   ++R+ M E+ + +   CSW
Sbjct: 573 CDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSW 632

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           I +K +VH FV GDR+H   + IY+ L
Sbjct: 633 ISVKGQVHRFVVGDRHHPQTEAIYSKL 659



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 200/447 (44%), Gaps = 48/447 (10%)

Query: 19  KLHSLAPNYLI-----ETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           KL SLA   LI      T K     +E   +R     CGS  D    V +VFDE+   N+
Sbjct: 99  KLRSLADGRLIHDRLRRTVKNPSGSIENCLLRM-YCDCGSCID----VQKVFDEMLMKNL 153

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS   +I  +AK    E+AI LFS M    IRP+   + S++ S      L LGKQ+H+ 
Sbjct: 154 VSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSH 213

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             +  L +N+ V +AI ++Y++                          CG L     E A
Sbjct: 214 VIRAQLNANITVETAICNMYVR--------------------------CGWL-----EGA 242

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             +F  M  +N V+W  ++ GY+Q  + E A+ LF  M  EG+  +       +     +
Sbjct: 243 KLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGL 302

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
               MG+  H+  VK   + +V VG  L+ FY KCG +E +   F +++E N V+W+A+I
Sbjct: 303 EDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALI 362

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-KLEDP 372
            G++Q+GR E+ I+ F  +R  G+  N      +  AC     +  G      A K    
Sbjct: 363 SGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLV 422

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEF 430
             L  E  + MV + S+ GR   A+     +  +P    W A++ G   H N    LG F
Sbjct: 423 SYLYGE--SAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGNAAEALGFF 479

Query: 431 AARRILALDPEDVSSYVMLSNALSVAG 457
              +   + P  V +++ +  A S +G
Sbjct: 480 RRMQSYGVRPNAV-TFIAVLTACSHSG 505



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 31/255 (12%)

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142
            +KQ   +EA      M   ++  +  ++  +  +   L  L  G+ +H    +     +
Sbjct: 62  LSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPS 121

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
             + + +L +Y    S  +  +VF++    N+VS+  +I    K    E A++LF +M  
Sbjct: 122 GSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQA 181

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
             +              R   AV  ++ +L+  L P+                L +GK  
Sbjct: 182 SGI--------------RPNSAV--YMSLLQSCLGPSF---------------LELGKQI 210

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H+  ++     ++ V  ++ + Y +CG +E + LVFD +  +N VTW  ++ GY Q  + 
Sbjct: 211 HSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKL 270

Query: 323 EEAIEFFERMRINGI 337
           E A+E F RM + G+
Sbjct: 271 EVALELFARMAMEGV 285


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 268/469 (57%), Gaps = 39/469 (8%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T    CG      SS  +VFDE+ + NVV+ T +I   ++   YEE++ LF +M   
Sbjct: 196 ALITSYFRCGC----CSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDG 251

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P+  T+ S + + + L+ +  G+Q+H    K+G+  ++ + SA++D+Y K       
Sbjct: 252 PVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSK------- 304

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG L     EDA K+F+     + VS   ++ G +Q G  E
Sbjct: 305 -------------------CGSL-----EDAWKIFESAEEVDEVSMTVILVGLAQNGFEE 340

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANI-AALGMGKSFHACAVKFLGKLDVFVGNSL 281
           E++ +F++M++ G+V + + +  AI+    I  +L +GK  H+  +K     + FV N L
Sbjct: 341 ESIQVFVKMVKNGVVIDPNMIS-AILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGL 399

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I+ Y+KCG ++DS+ +F  + +RN V+WN++I  +A++G G  A++ +E MR+ G+ P  
Sbjct: 400 INMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTD 459

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFL 400
           VT L LL AC H GLVEKG   F ++  +D G+  + EHYAC+VD++ R+G   EAK+F+
Sbjct: 460 VTFLSLLHACAHVGLVEKGMG-FLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFI 518

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             LP  PGI  W+ALLG C IH N E+G++AA ++    PE  + Y++L+N  S  GKW 
Sbjct: 519 ERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWK 578

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
             +   ++MK+ G+T+  G SWIEI+ ++H FV  DR H   + IY VL
Sbjct: 579 ERARTIKKMKDMGVTKETGISWIEIEKQIHSFVVEDRMHPHAEIIYGVL 627



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 6/180 (3%)

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP-NH 240
           CG L+     DA K+F  MP ++ +SWN+ I G    G  E    +F ++   G+   + 
Sbjct: 102 CGELR-----DATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQ 156

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           +TL   + A        + K  H+    +  + ++ VGN+LI+ Y +CG       VFD+
Sbjct: 157 ATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDE 216

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++E+N+VTW AVI G +Q    EE+++ F +MR   + PN +T L  L AC+    + +G
Sbjct: 217 MSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREG 276



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 11/108 (10%)

Query: 256 LGMGKSFHACAVKFLGKLD----------VFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
           L +G S HA  +K  G LD          + V NSL+S Y++CG + D+  VFD +  ++
Sbjct: 60  LHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKD 119

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGI-RPNGVTLLGLLWACN 352
            ++WN+ I G   NG  E     F+++  +GI + +  TL  +L AC+
Sbjct: 120 TISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACD 167


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 256/469 (54%), Gaps = 38/469 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEF 109
           CG    +  +  QVFDE    +VV    +I  +A+Q    ++  +F  M+ +  +RP+E 
Sbjct: 153 CG----EIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEG 208

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           T   +I +    ++L LG+ +H +  K + L+  V + +A+++LY+K             
Sbjct: 209 TMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVK------------- 255

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                        CG L   R     KLF E+P +N V WN++I GY Q G   E + L 
Sbjct: 256 -------------CGYLDGAR-----KLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELL 297

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM    L P+  T+   + A A + A  +G   H  A K  G  DVF+G +LI  YAKC
Sbjct: 298 REMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEK-KGIWDVFIGTALIDMYAKC 356

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +  +  VFD++ ERN+ TWNA++ GYA +G+ E AIE F  MR +G RP+ +T L +L
Sbjct: 357 GFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVL 416

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC H+GLVE G  YF           + EHY CMVDLL R+G  +EA+E +  +  +P 
Sbjct: 417 HACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPN 476

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           +  W ALL  C IH N+E+GE+AA  ++ L+  D  SYV+L+N  + A +++ V  +R  
Sbjct: 477 VVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREM 536

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M EKG+ +  GCS IEI   VH FV  D+ H  ++EIY+VL   +++++
Sbjct: 537 MVEKGICKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLK 585



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 165/366 (45%), Gaps = 35/366 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-LLLNIRPSEFTFGSVIPSSTAL 121
           QVF++  + +      +I  ++       AI ++++M    NI   ++T+  V  +  + 
Sbjct: 59  QVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQ 118

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +  GK++H    ++G + + F+ S++L+ Y+    I  A +VF++    +VV +  +I
Sbjct: 119 FAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALI 178

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G  ++    D+  +F+EM     V                               PN  
Sbjct: 179 TGYARQGMVLDSFGVFKEMVEVKEVR------------------------------PNEG 208

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVK-FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           T+   I+A      L +G++ H   +K  + +  V +  +LI+ Y KCG ++ +  +FD+
Sbjct: 209 TMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDE 268

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + E+N V WN++ICGY Q G   E IE    M ++ ++P+  T+ G+L AC   G    G
Sbjct: 269 IPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLG 328

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
                 A  E  G+        ++D+ ++ G    A++ ++D   +  +  W A+L G  
Sbjct: 329 NWVHRFA--EKKGIWDVFIGTALIDMYAKCGFIGAARK-VFDQMNERNVATWNAILSGYA 385

Query: 421 IHSNVE 426
            H   E
Sbjct: 386 SHGQAE 391



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 186/384 (48%), Gaps = 47/384 (12%)

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           ++I + T ++ L   KQ+HA +    L    F+ + I++ ++  + ++ AT+VF  T  P
Sbjct: 11  ALIETCTNIQQL---KQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEP 67

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +   Y                               NAMI  YS +     A++++ +M 
Sbjct: 68  DGFIY-------------------------------NAMIRAYSSSQTPCVAISIYNKMR 96

Query: 233 R-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             + ++ +  T P    A A+  A+  GK  H   V+   +LD F+ +SL++FY  CG +
Sbjct: 97  ACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEI 156

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWA 350
            ++  VFD+   +++V WNA+I GYA+ G   ++   F+ M  +  +RPN  T++GL+ A
Sbjct: 157 GNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVA 216

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C  +  ++ G   + Y  +  +   G +K E  A +++L  + G    A++   ++P + 
Sbjct: 217 CIESKNLKLGRAIHGYMMKDMVLREG-VKLE--AALINLYVKCGYLDGARKLFDEIP-EK 272

Query: 408 GIGFWKALLGG-CQIHSNVELGEFAARRILA-LDPEDVSSYVMLSNALSVAGKWDNVSNI 465
               W +L+ G CQI S  E+ E      L+ L P+  +   +LS A +  G ++  + +
Sbjct: 273 NTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLS-ACAQMGAFNLGNWV 331

Query: 466 RREMKEKGMTRV-PGCSWIEIKSK 488
            R  ++KG+  V  G + I++ +K
Sbjct: 332 HRFAEKKGIWDVFIGTALIDMYAK 355


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 268/469 (57%), Gaps = 39/469 (8%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T    CG      SS  +VFDE+ + NVV+ T +I   ++   YEE++ LF +M   
Sbjct: 82  ALITSYFRCGC----CSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDG 137

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P+  T+ S + + + L+ +  G+Q+H    K+G+  ++ + SA++D+Y K       
Sbjct: 138 PVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSK------- 190

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG L     EDA K+F+     + VS   ++ G +Q G  E
Sbjct: 191 -------------------CGSL-----EDAWKIFESAEEVDEVSMTVILVGLAQNGFEE 226

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANI-AALGMGKSFHACAVKFLGKLDVFVGNSL 281
           E++ +F++M++ G+V + + +  AI+    I  +L +GK  H+  +K     + FV N L
Sbjct: 227 ESIQVFVKMVKNGVVIDPNMIS-AILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGL 285

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I+ Y+KCG ++DS+ +F  + +RN V+WN++I  +A++G G  A++ +E MR+ G+ P  
Sbjct: 286 INMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTD 345

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFL 400
           VT L LL AC H GLVEKG   F ++  +D G+  + EHYAC+VD++ R+G   EAK+F+
Sbjct: 346 VTFLSLLHACAHVGLVEKGMG-FLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFI 404

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             LP  PGI  W+ALLG C IH N E+G++AA ++    PE  + Y++L+N  S  GKW 
Sbjct: 405 ERLPEKPGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWK 464

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
             +   ++MK+ G+T+  G SWIEI+ ++H FV  DR H   + IY VL
Sbjct: 465 ERARTIKKMKDMGVTKETGISWIEIEKQIHSFVVEDRMHPHAEIIYGVL 513



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 1/162 (0%)

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP-NHSTLPCAIIAAANIAALGM 258
           MP ++ +SWN+ I G    G  E    +F ++   G+   + +TL   + A        +
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
            K  H+    +  + ++ VGN+LI+ Y +CG       VFD+++E+N+VTW AVI G +Q
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
               EE+++ F +MR   + PN +T L  L AC+    + +G
Sbjct: 121 GQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREG 162


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 248/458 (54%), Gaps = 35/458 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG   D      ++FDE+P+ ++ S  T+IG F    ++ EA  LF  M         
Sbjct: 163 VKCGLMLD----ARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRS 218

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF ++I +S  L  + +G+Q+H+ A K G+  + FV  A++D+Y K  SIE+A  VF+ 
Sbjct: 219 RTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFD- 277

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                         +MP +  V WN++I  Y+  G +EEA++ +
Sbjct: 278 ------------------------------QMPEKTTVGWNSIIASYALHGYSEEALSFY 307

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM   G   +H T+   I   A +A+L   K  HA  V+     D+    +L+ FY+K 
Sbjct: 308 YEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKW 367

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G MED+  VF+++  +N+++WNA+I GY  +G+GEEA+E FE+M   G+ PN VT L +L
Sbjct: 368 GRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVL 427

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+++GL E+G+  F     +     +  HYACMV+LL R G   EA E +   PF P 
Sbjct: 428 SACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPT 487

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W  LL  C++H N+ELG+ AA  +  ++PE + +Y++L N  + +GK    + + + 
Sbjct: 488 TNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQT 547

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           +K KG+  +P C+WIE+K + + F+ GD++H    EIY
Sbjct: 548 LKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIY 585



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 6/210 (2%)

Query: 220 RNEEAVNLF--IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
           R  EA+ LF  +E+  +G     ST    + A   + ++   K      V    + D++V
Sbjct: 95  RYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYV 154

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N ++  + KCG M D+  +FD++ E+++ +W  +I G+  +G   EA   F  M     
Sbjct: 155 MNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFN 214

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEA 396
                T   ++ A    GLV+ G    S A     G+      +C ++D+ S+ G  ++A
Sbjct: 215 DGRSRTFTTMIRASAGLGLVQVGRQIHSCAL--KRGVGDDTFVSCALIDMYSKCGSIEDA 272

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
                 +P    +G W +++    +H   E
Sbjct: 273 HCVFDQMPEKTTVG-WNSIIASYALHGYSE 301


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 162/463 (34%), Positives = 257/463 (55%), Gaps = 40/463 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA-- 120
           +VF+++  L+++S  ++I   A+    EE++ LF  +L   ++P  FT  S+  ++ A  
Sbjct: 342 EVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKA 401

Query: 121 ---LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L  L+ GKQ+HA A K G  S++ V S ILD+YIK   +  A  VF     P+ V+ 
Sbjct: 402 CGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVA- 460

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                                         W +MI G    G  ++A+ ++  M +  ++
Sbjct: 461 ------------------------------WTSMISGCVDNGNEDQALRIYHRMRQSRVM 490

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T    I A++ + AL  G+  HA  +K     D FVG SL+  YAKCG++ED+  +
Sbjct: 491 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRL 550

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F K+  RNI  WNA++ G AQ+G  EEA+  F+ M+ +GI P+ V+ +G+L AC+H GL 
Sbjct: 551 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLT 610

Query: 358 EKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            + Y Y   +   D G ++P  EHY+C+VD L R+G  +EA + +  +PF       +AL
Sbjct: 611 SEAYEYL-HSMPNDYG-IEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRAL 668

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           LG C+I  +VE G+  A R+ AL+P D ++YV+LSN  + A +WD+V++ R+ MK K + 
Sbjct: 669 LGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVK 728

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + PG SWI++K+ +H+FV  DR+H   D IY  +    + IRE
Sbjct: 729 KDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIRE 771



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 198/418 (47%), Gaps = 43/418 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  S+  +      +FD + + +VV    ++  + +    +EA  LFS      +RP E
Sbjct: 225 VNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDE 284

Query: 109 FTFGSVIPSS--TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           F+   ++        +DL LGKQ+H  A K GL S+V V ++++++Y K           
Sbjct: 285 FSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSK----------- 333

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                        M C    RE F D       M H +++SWN+MI   +Q+   EE+VN
Sbjct: 334 -------------MGCAYFAREVFND-------MKHLDLISWNSMISSCAQSSLEEESVN 373

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAA-----LGMGKSFHACAVKFLGKLDVFVGNSL 281
           LFI++L EGL P+H TL    +A A  A      L  GK  HA A+K     D+ V + +
Sbjct: 374 LFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 433

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           +  Y KCG M ++ +VF+ ++  + V W ++I G   NG  ++A+  + RMR + + P+ 
Sbjct: 434 LDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDE 493

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
            T   L+ A +    +E+G    +     D  +  P     +VD+ ++ G  ++A     
Sbjct: 494 YTFATLIKASSCVTALEQGRQLHANVIKLDC-VSDPFVGTSLVDMYAKCGNIEDAYRLFK 552

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            +     I  W A+L G   H N E  +  F + +   ++P+ V S++ + +A S AG
Sbjct: 553 KMNV-RNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRV-SFIGILSACSHAG 608



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 175/388 (45%), Gaps = 53/388 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFA-----KQHHYEEAIYLFSRMLLLNI- 104
           CGS     SS  QVFD  P+ ++V+   I+G +A        + +E ++LF R+L  ++ 
Sbjct: 125 CGS----LSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLLRASLG 179

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
             +  T   V+        L   + +H +A K+GL+ +VFV  A++++Y K         
Sbjct: 180 STTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK--------- 230

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
                            CG     R  DA  LF  M  R+VV WN M+ GY Q G  +EA
Sbjct: 231 -----------------CG-----RMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEA 268

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAA--ANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
             LF E  R GL P+  ++   +     A    L +GK  H  AVK     DV V NSL+
Sbjct: 269 FQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLV 328

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + Y+K G    +  VF+ +   ++++WN++I   AQ+   EE++  F  +   G++P+  
Sbjct: 329 NMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHF 388

Query: 343 TLLGLLW-----ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEA 396
           TL  +       AC    L+++G    + A     G     H  + ++D+  + G    A
Sbjct: 389 TLASITLATAAKACGCLVLLDQGKQIHAHAI--KAGFDSDLHVNSGILDMYIKCGDMVNA 446

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSN 424
              +++    P    W +++ GC  + N
Sbjct: 447 G-IVFNYISAPDDVAWTSMISGCVDNGN 473



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 42/247 (17%)

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++ ++ +  +L LGK  HA     G   + F+ + +L +Y K  S+  A +VF+ T    
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTT---- 138

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY-----SQTGRNEEAVNLF 228
                                      P R++V+WNA++G Y     S  G  +E ++LF
Sbjct: 139 ---------------------------PERDLVTWNAILGAYAASVDSNDGNAQEGLHLF 171

Query: 229 IEMLREGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
             +LR  L      TL   +    N   L   +  H  A+K   + DVFV  +L++ Y+K
Sbjct: 172 -RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSK 230

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN----GVT 343
           CG M D+ L+FD + ER++V WN ++ GY Q G  +EA + F     +G+RP+     + 
Sbjct: 231 CGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLI 290

Query: 344 LLGLLWA 350
           L G LWA
Sbjct: 291 LNGCLWA 297


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 250/470 (53%), Gaps = 29/470 (6%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           +C    D   S+ Q+FDE P  +  S  TII    +  H  +A+    RM    +  + +
Sbjct: 187 ACIQSGDILGSM-QLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHY 245

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T+ +    +  L   +LG+QLH       L+ + FV S+++D+Y K   +E A  VF D 
Sbjct: 246 TYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVF-DH 304

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
            +P                       L ++M      +W+ M+ GY Q GR EEA++LF 
Sbjct: 305 WSP-----------------------LTRDMN----FAWSTMVAGYVQNGREEEALDLFR 337

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            MLREG+  +  TL     A AN+  +  G+  H C  K   KLD  + ++++  YAKCG
Sbjct: 338 RMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCG 397

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           ++ED+  +FD+   +NI  W +++C YA +G+G  AIE FERM    + PN +TL+G+L 
Sbjct: 398 NLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLS 457

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           AC+H GLV +G  YF Q + E   +   EHY C+VDL  RSG   +AK F+ +   +   
Sbjct: 458 ACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEA 517

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             WK LL  C++H + E  + A+ +++ L+  D  SYVMLSN  +   KW +   +R  M
Sbjct: 518 IVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSM 577

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +E+ + + PG SWI +K+ VH FV GD +H  + EIYA L    E+++E 
Sbjct: 578 QERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEI 627



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 176/369 (47%), Gaps = 16/369 (4%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVI 115
           +F     VFDE P       T  I   A++  Y + +  F+ ML      P+ F   +V+
Sbjct: 60  RFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVV 119

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
                + D+  GK++H W  + G+  +V + +A+LD+Y K    E A RVF      + V
Sbjct: 120 RCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAV 179

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+   I   ++      +++LF E P R+  SWN +I G  ++G   +A++    M + G
Sbjct: 180 SWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAG 239

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           +V NH T   A + A  +    +G+  H   +    + D FV +SL+  Y KCG +E + 
Sbjct: 240 VVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAA 299

Query: 296 LVFDK---LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            VFD    LT      W+ ++ GY QNGR EEA++ F RM   G+  +  TL  +  AC 
Sbjct: 300 SVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACA 359

Query: 353 HTGLVEKGYSYFSQA-----KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           + G+VE+G            KL+ P        + +VD+ ++ G  ++A+  ++D     
Sbjct: 360 NVGMVEQGRQVHGCVEKLWYKLDAPLA------SAIVDMYAKCGNLEDARS-IFDRACTK 412

Query: 408 GIGFWKALL 416
            I  W ++L
Sbjct: 413 NIAVWTSML 421



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 1/165 (0%)

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTL 243
           ++R RF DA  +F E P R    W   I G ++ GR  + +  F EML EG   PN   L
Sbjct: 56  VRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVL 115

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   A +  +  GK  H   ++    LDV + N+++  YAKCG  E +  VF  + E
Sbjct: 116 AAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAE 175

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           R+ V+WN  I    Q+G    +++ F+   +         + GL+
Sbjct: 176 RDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLM 220



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 10/198 (5%)

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IR 338
           S++ F+ +     D+  VFD+   R    W   I G A+ GR  + +  F  M   G   
Sbjct: 50  SVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEAT 109

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           PN   L  ++  C   G VE G        L +   L       ++D+ ++ G+F+ A+ 
Sbjct: 110 PNAFVLAAVVRCCAGMGDVESGKRVHGW-MLRNGVHLDVVLCNAVLDMYAKCGQFERARR 168

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAG 457
               +     +  W   +G C I S   LG     ++    P  D +S+  + + L  +G
Sbjct: 169 VFGAMAERDAVS-WNIAIGAC-IQSGDILGSM---QLFDESPLRDTTSWNTIISGLMRSG 223

Query: 458 K-WDNVSNIRREMKEKGM 474
              D +S++RR M + G+
Sbjct: 224 HAADALSHLRR-MAQAGV 240


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 180/538 (33%), Positives = 276/538 (51%), Gaps = 61/538 (11%)

Query: 6   CICRSSLSLNKLSKLHSLA-----------PNYLIETQKASVQKLETPAI------RTDS 48
           CI  +SLSL K  +LHSL             N+L+       Q L+T         R + 
Sbjct: 62  CISENSLSLGK--QLHSLIITSGCSSDKFISNHLLNLYSKCGQ-LDTAITLFGVMPRKNI 118

Query: 49  VSCGS------ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           +SC         S  + +  ++FDE+P+ NV +   ++    +    EE + LFSRM  L
Sbjct: 119 MSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNEL 178

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
              P EF  GSV+     L  L  G+Q+H +  K G + N+ V S++  +Y+K  S+ E 
Sbjct: 179 GFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEG 238

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            R                               L + MP +NVV+WN +I G +Q G  E
Sbjct: 239 ER-------------------------------LIRAMPSQNVVAWNTLIAGRAQNGYPE 267

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           E ++ +  M   G  P+  T    I + + +A LG G+  HA  +K    L V V +SLI
Sbjct: 268 EVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLI 327

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           S Y++CG +E SL VF +    ++V W+++I  Y  +GRG EAI+ F +M    +  N V
Sbjct: 328 SMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDV 387

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFL 400
           T L LL+AC+H GL EKG  +F    +E  G +KP  EHY CMVDLL R G  +EA+  +
Sbjct: 388 TFLSLLYACSHCGLKEKGIKFF-DLMVEKYG-VKPRLEHYTCMVDLLGRYGSVEEAEALI 445

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             +P    +  WK LL  C+IH   E+    +  +  LDP D   YV+LSN  +   +WD
Sbjct: 446 RSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWD 505

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +VS++R+ M+++ + + PG SW+E+K+++H F  GD++H  + EI + LR  T ++++
Sbjct: 506 DVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKK 563



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 131/250 (52%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  ++ S  +   L+LGKQLH+     G  S+ F+ + +L+LY K   ++ A  +F    
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             N++S   +I G  +   +  A K+F EMP RNV +WNAM+ G  Q   NEE + LF  
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSR 174

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   G +P+   L   +   A + AL  G+  H    K   + ++ V +SL   Y KCGS
Sbjct: 175 MNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGS 234

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + +   +   +  +N+V WN +I G AQNG  EE ++ +  M++ G RP+ +T + ++ +
Sbjct: 235 LGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISS 294

Query: 351 CNHTGLVEKG 360
           C+    + +G
Sbjct: 295 CSELATLGQG 304


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/431 (36%), Positives = 246/431 (57%), Gaps = 30/431 (6%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  + +    E+A+ LF++M   +I    +T+ SV  +  AL+ L+LGK++HA A K G
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSG 405

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+ N          Y+ +S               N V+     CG L     ED  K+F 
Sbjct: 406 LEVN----------YVSIS---------------NAVANAYAKCGSL-----EDVRKVFN 435

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            M  R+++SW +++  YSQ    ++A+ +F  M  EG+ PN  T    +++ AN+  L  
Sbjct: 436 RMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEY 495

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+  H    K    +D  + ++L+  YAKCG + D+  VF++++  + V+W A+I G+AQ
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQ 555

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +G  ++A++ F RM   G+ PN VT L +L+AC+H GLVE+G  YF   K     + + E
Sbjct: 556 HGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEME 615

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           HYAC+VDLLSR G   +A EF+  +P +P    W+ LLG C++H NVELGE AA++IL+ 
Sbjct: 616 HYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSF 675

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
             E+ ++YV+LSN    +G + +  ++R  MKE+G+ + PGCSWI +   +H F  GD+ 
Sbjct: 676 KAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGDQQ 735

Query: 499 HHMNDEIYAVL 509
           H   D+IYA L
Sbjct: 736 HPEKDKIYAKL 746



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 33/287 (11%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+     +  ++FD++   N  S T +I   A+   + +    F  M    I P +F + 
Sbjct: 116 SKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYS 175

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            ++     L+ + LG  +HA     G  S+ FV +A+L++Y KL  IE            
Sbjct: 176 GILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIE------------ 223

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                              D+ K+F  M   NVVSWNAMI G++      +A +LF+ M+
Sbjct: 224 -------------------DSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMM 264

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            EG+ P+  T      A   +  +   K     A++     +  VG +LI   +KCGS++
Sbjct: 265 GEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQ 324

Query: 293 DSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           ++  +F+   +T R    WNA+I GY ++G  E+A+E F +M  N I
Sbjct: 325 EARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 12  LSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           LSL K  K+H+ A    +E    S+    + A+      CGS  D    V +VF+ + D 
Sbjct: 391 LSLGK--KVHARAIKSGLEVNYVSI----SNAVANAYAKCGSLED----VRKVFNRMEDR 440

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           +++S T+++  +++   +++AI +FS M    I P++FTF SV+ S   L  L  G+Q+H
Sbjct: 441 DLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH 500

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
               KVGL  +  + SA++D+Y K   + +A +VF    N + VS+T +I G  +    +
Sbjct: 501 GIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVD 560

Query: 192 DALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCA 246
           DAL+LF+ M       N V++  ++   S  G  EE +  F  M +  GLVP      C 
Sbjct: 561 DALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI 620

Query: 247 IIAAANIAALGMGKSF 262
           +   + +  L     F
Sbjct: 621 VDLLSRVGHLNDAMEF 636



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K    + A +LF +M  RN  SW  +I G ++ G   +    F EM  +G+ P+      
Sbjct: 117 KCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSG 176

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            +     + ++ +G   HA  V        FV  +L++ YAK   +EDS  VF+ +TE N
Sbjct: 177 ILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVN 236

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           +V+WNA+I G+  N    +A + F RM   G+ P+  T +G+  A      V K     S
Sbjct: 237 VVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE-VS 295

Query: 366 QAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAK 397
              LE   D   L       ++D+ S+ G  +EA+
Sbjct: 296 GYALELGVDSNTLVG---TALIDMNSKCGSLQEAR 327



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%)

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           KF     + + N +   Y+KC  ++ +  +FD++++RN  +W  +I G A+NG   +  E
Sbjct: 98  KFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFE 157

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           FF  M+  GI P+     G+L  C     +E G
Sbjct: 158 FFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 254/455 (55%), Gaps = 35/455 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  +V+   +II  ++   +  EA+ LF+ M    +  ++ T  +++ S+   + 
Sbjct: 346 VFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQA 405

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
               +Q+H  + K G Q + +V +++LD Y K                          C 
Sbjct: 406 NGFCEQVHTISIKSGYQYDGYVANSLLDSYGK--------------------------CC 439

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           LL     EDA K+F+  P  ++V++ +MI  YSQ G  EEA+ +++ M    + P+    
Sbjct: 440 LL-----EDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIF 494

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                A AN++A   GK  H   +K     DVF GNSL++ YAKCGS++D+  +F++++ 
Sbjct: 495 SSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISW 554

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R IV+W+A+I G AQ+G G +A++ F +M  NGI PN +TL+ +L ACNH GLV +   +
Sbjct: 555 RGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRF 614

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F    +E    + P  EHYACMVD+L R GR  EA   + ++PF      W ALLG  +I
Sbjct: 615 F--GLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARI 672

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N+ELG  AA  +L L+PE   ++++L+N  +  G WDNV+ +RR MK   + + PG S
Sbjct: 673 HKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMS 732

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           WIE+K KV+ F+ GDR+H  + EIY  L    E++
Sbjct: 733 WIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERL 767



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 175/362 (48%), Gaps = 35/362 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF E+P  ++VS   +I         + A+ L  +M    + PS FT  S + +  A+  
Sbjct: 245 VFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGL 304

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           + LG+QLH+   K+ ++ + FVG  ++D+Y K                          CG
Sbjct: 305 VKLGRQLHSALMKMDMEPDSFVGVGLIDMYSK--------------------------CG 338

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           LL     +DA  +F  MP ++V+ WN++I GYS  G + EA++LF  M +EGL  N +TL
Sbjct: 339 LL-----QDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTL 393

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + A   A G  +  H  ++K   + D +V NSL+  Y KC  +ED+  VF+    
Sbjct: 394 STILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPA 453

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            ++V + ++I  Y+Q G GEEA++ + RM+   I+P+      L  AC +    E+G   
Sbjct: 454 EDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQI 513

Query: 364 FSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                +   G+L        +V++ ++ G   +A     ++ +  GI  W A++GG   H
Sbjct: 514 --HVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQH 570

Query: 423 SN 424
            +
Sbjct: 571 GH 572



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 200/450 (44%), Gaps = 45/450 (10%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           PDL  VS + +I  + +    EEA+  +  M LL  + +EFTF SV+   +   +L LGK
Sbjct: 111 PDL--VSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGK 168

Query: 129 QLHAWA-----TKVGLQSNVFVGSAILDLYIKLSSIEEATRV----FEDTHNPNVVSYTT 179
           Q+H  A        G+  N F  S +L+    L       +V     +  ++ +  S   
Sbjct: 169 QIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANA 228

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           ++    K    E A+ +F E+P  ++VSWNA+I G     +N+ A+ L  +M    + P+
Sbjct: 229 LLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPS 288

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             TL  A+ A A I  + +G+  H+  +K   + D FVG  LI  Y+KCG ++D+ +VFD
Sbjct: 289 MFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFD 348

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA--------- 350
            +  ++++ WN++I GY+  G   EA+  F  M   G+  N  TL  +L +         
Sbjct: 349 LMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGF 408

Query: 351 CN--HTGLVEKGY------------SYFSQAKLEDPGM---LKPEH----YACMVDLLSR 389
           C   HT  ++ GY            SY     LED      + P      Y  M+   S+
Sbjct: 409 CEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQ 468

Query: 390 SGRFKEAKEF---LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD-PEDVSS 445
            G  +EA +    + D    P    + +L   C   S  E G+     +L      DV +
Sbjct: 469 YGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFA 528

Query: 446 YVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
              L N  +  G  D+ S I  E+  +G+ 
Sbjct: 529 GNSLVNMYAKCGSIDDASCIFNEISWRGIV 558



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 154/311 (49%), Gaps = 18/311 (5%)

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           TA +D++ G  +HA   ++     + + + +++LY K      A ++  D+  P++VS++
Sbjct: 61  TASKDVSSGMAIHA---RIIRLGLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWS 117

Query: 179 TMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQT-----GRNEEAVNLFI 229
            +I G ++  R E+AL  + EM       N  ++++++ G S T     G+    V L  
Sbjct: 118 ALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVT 177

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           EM+  G+ PN  +L   + A A +     G   H   +K     D F  N+L+  YAK G
Sbjct: 178 EMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSG 237

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
             E ++ VF ++ + +IV+WNAVI G   + + + A++   +M    + P+  TL   L 
Sbjct: 238 CPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALK 297

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           AC   GLV+ G    S     D   ++P+ +    ++D+ S+ G  ++A+  ++DL    
Sbjct: 298 ACAAIGLVKLGRQLHSALMKMD---MEPDSFVGVGLIDMYSKCGLLQDAR-MVFDLMPXK 353

Query: 408 GIGFWKALLGG 418
            +  W +++ G
Sbjct: 354 DVIVWNSIISG 364



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 128/260 (49%), Gaps = 47/260 (18%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+  P  ++V+ T++I  +++    EEA+ ++ RM   +I+P  F F S+  +   L 
Sbjct: 446 KVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLS 505

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               GKQ+H    K GL S+VF G++++++Y K  SI++A+ +F +     +VS++ MI 
Sbjct: 506 AYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIG 565

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           GL                               +Q G   +A+ LF +ML+ G++PNH T
Sbjct: 566 GL-------------------------------AQHGHGRKALQLFYQMLKNGILPNHIT 594

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS--------LISFYAKCGSMEDS 294
           L  ++++A N A L         A +F G ++   G +        ++    + G ++++
Sbjct: 595 L-VSVLSACNHAGLVTE------ARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEA 647

Query: 295 LLVFDKLT-ERNIVTWNAVI 313
           +++  ++  + +   W A++
Sbjct: 648 MVLVKEMPFQASAAVWGALL 667


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/461 (33%), Positives = 267/461 (57%), Gaps = 2/461 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTF 111
           + S       ++FDE+ D +VVS TT++  +A+    +EA  +F RM++     P+E T 
Sbjct: 177 ASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTL 236

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            +   ++  +  L LG+ +H    + G++ +V + +A++D++ K   +  A  +F+    
Sbjct: 237 VAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPI 296

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            +V S+T+M+    K    E+A KLF+E+P+RN VSW+ M+  YSQ    EEA+ +F +M
Sbjct: 297 KDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDM 356

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFH-ACAVKFLGKLDVFVGNSLISFYAKCGS 290
           +  G+ P  +TL   + A A +  L +G+  + A  V    +L V + N+ I  +AKCG 
Sbjct: 357 IAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGD 416

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  +F  + ++N+V+WN +I  +A +G+ EEA+  F++ +  GI P+ +T +G+L A
Sbjct: 417 VGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSA 476

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+H+GLV +G  +F + K+      + EHYACM+DLL + G  +EA E    +P      
Sbjct: 477 CSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEA 536

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL  C++H NVE+G+ AA +++ LDP D   YV++S   +   KW  V  IR  M+
Sbjct: 537 GWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMR 596

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
           ++G+ + PGCS IE+  K H F+  D +H  +++IYA L +
Sbjct: 597 DRGVKKNPGCSSIEVDGKFHEFLAADVSHAHSEDIYAALEN 637



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/466 (23%), Positives = 191/466 (40%), Gaps = 74/466 (15%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPD-LNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           PA R  +    S+  + +    V  +  +  N     T++  F +      A+ LF R+L
Sbjct: 65  PASRLLAFCALSDPPRLAHAAAVLAQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVL 124

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSI 159
              +     T   V     A    +  + +H  A K G +  +V VG+A++ +Y    S+
Sbjct: 125 RDRLPADARTI--VFAVKAATTSSSPAEAIHCVAFKRGFIGQSVLVGNALVHMYASSMSL 182

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
            +A ++F++  + +VVS+TT                               ++ GY++ G
Sbjct: 183 PDARKLFDEMADRDVVSWTT-------------------------------LVDGYARGG 211

Query: 220 RNEEAVNLFIEM-LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK---------- 268
             +EA  +F  M +  G  PN  TL  A  AA  I  LG+G+  H C V+          
Sbjct: 212 LPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLE 271

Query: 269 -----FLGKL----------------DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
                  GK                 DV+   S++S YAKCG +E++  +F ++  RN V
Sbjct: 272 NALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAV 331

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +W+ ++  Y+Q    EEA+  F  M   G+ P   TL+ +L AC   G ++ G   +   
Sbjct: 332 SWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAY 391

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE- 426
            +     L        +D+ ++ G    A     ++  D  +  W  ++    +H   E 
Sbjct: 392 IVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNME-DKNVVSWNTMIVAHALHGQSEE 450

Query: 427 -LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
            L  F   + + + P+++ +Y+ + +A S +G    VS  R   KE
Sbjct: 451 ALHLFQKFKAIGIFPDEI-TYIGVLSACSHSGL---VSEGRYHFKE 492



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 105/208 (50%), Gaps = 6/208 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  ++     +  ++F E+P+ N VS + ++  +++ +  EEA+ +F+ M+   + 
Sbjct: 303 TSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVE 362

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLH-AWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           P + T  SV+ +   L  L++G+ L+ A+     ++  V + +A +D++ K   +  A+R
Sbjct: 363 PIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASR 422

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGR 220
           +F +  + NVVS+ TMI       + E+AL LFQ+     +    +++  ++   S +G 
Sbjct: 423 LFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGL 482

Query: 221 NEEAVNLFIEM-LREGLVPNHSTLPCAI 247
             E    F EM +  G+ P      C I
Sbjct: 483 VSEGRYHFKEMKIVYGIEPRAEHYACMI 510


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 265/469 (56%), Gaps = 35/469 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D+   V ++F E+P+L+ +S   +I  +A    ++E+  LF ++        +F F 
Sbjct: 287 SKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFA 346

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  +T+  +L +G+Q+H  A  VG      V +A++D+Y K +  +EA ++F++    
Sbjct: 347 TLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDN---- 402

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                  + C                    ++ V W AMI  Y Q G++EE +N+F +M 
Sbjct: 403 -------IAC--------------------KSTVPWTAMISAYVQKGKHEEGINVFSDMR 435

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R G+  + +T    + A AN+A++ +G+  H+  ++     +V+ G++L+  YAKCG M 
Sbjct: 436 RTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMT 495

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D++  F ++ ERN V+WNA+I  YAQNG  +  +  F++M  +G +P+ V+ L +L AC+
Sbjct: 496 DAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACS 555

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H G VE+   +F+          K EHY  MVD+L R+GRF EA++ + ++PF+P    W
Sbjct: 556 HCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMW 615

Query: 413 KALLGGCQIHSNVELGEFAARRILAL-DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
            ++L  C+IH N EL + AA R+  + D  D + Y+ +SN  +VAG+WDNV+ +++ M++
Sbjct: 616 SSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRD 675

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           +G+ +VP  SW+EIK + HVF   D++H    E+  +LR      +E E
Sbjct: 676 RGVRKVPAYSWVEIKHQTHVFSANDKSH---PEMKKILRKINALSKEME 721



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 180/409 (44%), Gaps = 43/409 (10%)

Query: 51  CGSESDKFSSVH------QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104
           C S  D +   H      Q+F  + + + V+  +++  ++ +   EEAI LF  +    I
Sbjct: 178 CNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGI 237

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           +PS+FTF +++ ++  L+D   G+Q+H +  K     NVFVG+A+LD Y K   ++E   
Sbjct: 238 KPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVG- 296

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
                                         KLF EMP  + +S+N +I  Y+  G+ +E+
Sbjct: 297 ------------------------------KLFYEMPELDGISYNVVITSYAWNGQFKES 326

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
            +LF ++               +  A +   L MG+  H  A+      +  V N+L+  
Sbjct: 327 FDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDM 386

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YAKC   +++  +FD +  ++ V W A+I  Y Q G+ EE I  F  MR  G+  +  T 
Sbjct: 387 YAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATF 446

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDL 403
             +L AC +   +  G    S   L   G +   +  + ++D  ++ G   +A +   ++
Sbjct: 447 ASILRACANLASISLGRQLHSL--LIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEM 504

Query: 404 PFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
           P    +  W AL+     + NV+  L  F         P+ VS   +LS
Sbjct: 505 PERNSVS-WNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLS 552



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 157/327 (48%), Gaps = 35/327 (10%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           CRS+  +N   +   L   + +  Q  +   +    + +  +  G    K S   ++FD 
Sbjct: 44  CRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFG----KLSKARELFDG 99

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           + +   VS T +IG + + +  +EA  L++ M    I P   T  +++     LE  N+ 
Sbjct: 100 MVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVI 159

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            Q+H    K+G + N+ V ++++D Y K             TH           C  L  
Sbjct: 160 VQIHTHVIKLGYEYNLMVCNSLVDAYCK-------------TH-----------CLYL-- 193

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                A +LF+ M +++ V++N+++ GYS  G NEEA+ LF+E+   G+ P+  T    +
Sbjct: 194 -----ASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALL 248

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            AA  +     G+  H   +K     +VFVGN+L+ +Y+K   +++   +F ++ E + +
Sbjct: 249 SAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGI 308

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRI 334
           ++N VI  YA NG+ +E+ + F +++ 
Sbjct: 309 SYNVVITSYAWNGQFKESFDLFRKLQF 335



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 15/295 (5%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN    + A   K G   N    +  ++ +++   +  A +VF+     N +S   MI G
Sbjct: 24  LNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISG 83

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            LK  +   A +LF  M  R  VSW  +IGGY Q+ +++EA  L+ +M R G+ P++ TL
Sbjct: 84  HLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTL 143

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +     +    +    H   +K   + ++ V NSL+  Y K   +  +  +F  +  
Sbjct: 144 VTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLN 203

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           ++ VT+N+++ GY+  G  EEAIE F  +  +GI+P+  T   LL A    GL +   + 
Sbjct: 204 KDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAA--VGLDD---TK 258

Query: 364 FSQAKLEDPGMLKPEHYA-------CMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           F Q   +  G +   ++         ++D  S+  +  E  +  Y++P   GI +
Sbjct: 259 FGQ---QVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISY 310


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/444 (35%), Positives = 252/444 (56%), Gaps = 1/444 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F    + NV   T +I  F    +Y EAI L+SRML  +I P  +   S++ +  +  
Sbjct: 102 RIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQL 161

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G+++H+ A K+G  SN  V   I++LY K   + +A RVFE+    +VV+ T MI 
Sbjct: 162 ALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMIS 220

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
               +   E+A  +F  +  ++ V W AMI G+ +      A+  F  M  E + PN  T
Sbjct: 221 SYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFT 280

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           + C + A + + AL +G+  H+   KF  +L++FVGN+LI+ Y++CGS++++  VFD++ 
Sbjct: 281 IVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK 340

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +R+++T+N +I G + NG+  +AIE F  M    +RP  VT +G+L AC+H GLV+ G+ 
Sbjct: 341 DRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFE 400

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            F     +     + EHY CMVDLL R GR +EA + +  +   P       LL  C++H
Sbjct: 401 IFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMH 460

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+ELGE  A+ +      D  +YV+LS+  + +GKW   + +R +MKE GM + PGCS 
Sbjct: 461 KNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSS 520

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIY 506
           IE+ +++H F+ GD  H   + IY
Sbjct: 521 IEVNNEIHEFLLGDLRHPQKERIY 544



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 164/345 (47%), Gaps = 30/345 (8%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +HA   + G   + F+   +L    K  +I+ A+R+F+ THNPNV  YT +I G +    
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
           + +A++L+  M H +++  N ++    +   ++ A       LREG   +   L     +
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLA-------LREGREVHSRALKLG-FS 179

Query: 250 AANIAALGMGKSFHAC-----AVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +  +  L + + +  C     A +   ++  DV     +IS Y+  G +E++  VF ++ 
Sbjct: 180 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVR 239

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
            ++ V W A+I G+ +N     A+E F  M+   +RPN  T++ +L AC+  G +E G  
Sbjct: 240 RKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 299

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            +SY  + ++E    L       ++++ SR G   EA+  ++D   D  +  +  ++ G 
Sbjct: 300 VHSYMRKFEIE----LNLFVGNALINMYSRCGSIDEAQT-VFDEMKDRDVITYNTMISGL 354

Query: 420 QIHSN----VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
            ++      +EL      R   L P +V ++V + NA S  G  D
Sbjct: 355 SMNGKSRQAIELFRVMVGR--RLRPTNV-TFVGVLNACSHGGLVD 396



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 174/429 (40%), Gaps = 107/429 (24%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           M  +L  C S L+L +  ++HS A          S  +L    I      CG   D    
Sbjct: 150 MASILKACGSQLALREGREVHSRALKLGF-----SSNRLVRLRIMELYGKCGELGD---- 200

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR---------------------- 98
             +VF+E+P+ +VV++T +I  ++ Q   EEA  +FSR                      
Sbjct: 201 ARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEET 259

Query: 99  ---------MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAI 149
                    M   N+RP+EFT   V+ + + L  L +G+ +H++  K  ++ N+FVG+A+
Sbjct: 260 NRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNAL 319

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           +++Y +  SI+EA  VF++  + +V++Y TMI GL                         
Sbjct: 320 INMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGL------------------------- 354

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
                 S  G++ +A+ LF  M+   L P +                          V F
Sbjct: 355 ------SMNGKSRQAIELFRVMVGRRLRPTN--------------------------VTF 382

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
           +G L+      L+ F    G      +  D   E  I  +  ++    + GR EEA +  
Sbjct: 383 VGVLNACSHGGLVDF----GFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLI 438

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
             M++    P+ + L  LL AC     +E G     +  LED G      Y  +  + + 
Sbjct: 439 RTMKMT---PDHIMLGTLLSACKMHKNLELGEQVAKE--LEDRGQADSGTYVLLSHVYAS 493

Query: 390 SGRFKEAKE 398
           SG++KEA +
Sbjct: 494 SGKWKEAAQ 502


>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
          Length = 435

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/431 (38%), Positives = 243/431 (56%), Gaps = 14/431 (3%)

Query: 96  FSRMLLLNIRPSEFTF-------GSVIPSSTALEDLNLGKQLHAWATKVGL-QSNVFVGS 147
           FS M L  + P+  TF       G ++  S AL DL     LH +A K+GL +++V VG+
Sbjct: 2   FSGMRLAGVEPNHITFIALLSGWGDLLSGSEALGDL-----LHGYACKLGLDRAHVMVGT 56

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
           AIL +Y K     +A  VF+     N V++ TMI G ++  + +DA+KLF EMP R+++S
Sbjct: 57  AILGMYSKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLIS 116

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           W AMI G+ + G +EEA+  F EM   G+ P++  +  A+ A  N+ AL  G   H   V
Sbjct: 117 WTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVV 176

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
               K +V V NSLI  Y +CG +E +  VFDK+ +R +V+WN+VI G+A NG   E++ 
Sbjct: 177 SQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLV 236

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
           +F +M+  G +PN VT  G L ACNH GLVE+G  YF   K +     + EHY C+VDL 
Sbjct: 237 YFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLY 296

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH-SNVELGEFAARRILALDPEDVSSY 446
           SR+GR ++A + +  +P  P      +LL  C+   +N  L E   + +  L+ +  S+Y
Sbjct: 297 SRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNY 356

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           V+LSN  +  GKW+  S +RR+MK  G+ + PG S IEI    HVF+ GD  H     I 
Sbjct: 357 VILSNMYAADGKWEGASKMRRKMKGLGLKKEPGFSSIEIDDCTHVFMAGDNTHVETTNIR 416

Query: 507 AVLRSCTEQIR 517
            VL   +   R
Sbjct: 417 EVLELLSSDTR 427



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 108/240 (45%), Gaps = 32/240 (13%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FDE+P+ +++S T +I  F K+  +EEA+  F  M +  ++P      + + + T L 
Sbjct: 104 KLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLG 163

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L+ G  +H +      ++NV V ++++DLY +   +E A +VF+      VVS+     
Sbjct: 164 ALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSW----- 218

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                     N++I G++  G   E++  F +M  EG  PN  T
Sbjct: 219 --------------------------NSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVT 252

Query: 243 LPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
              A+ A  ++  +  G + F +    +     +     L+  Y++ G +ED+L V   +
Sbjct: 253 FTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSM 312


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/447 (36%), Positives = 251/447 (56%), Gaps = 8/447 (1%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++VS + ++  + +    EEA+ LF  M    +   E    S + + + + ++ +G+ +H
Sbjct: 234 DMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVH 293

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP-NVVSYTTMICGLLKRERF 190
             A KVG++  V + +A++ LY     I +A R+F+D     +++S+ +MI G L+    
Sbjct: 294 GLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSI 353

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
           +DA  LF  MP ++VVSW+AMI GY+Q     EA+ LF EM   G+ P+ + L  AI A 
Sbjct: 354 QDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISAC 413

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
            ++A L +GK  HA   +   +++V +  +LI  Y KCG +E++L VF  + E+ + TWN
Sbjct: 414 THLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWN 473

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           AVI G A NG  E+++  F  M+  G  PN +T +G+L AC H GLV  G  YF+    E
Sbjct: 474 AVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHE 533

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
                  +HY CMVDLL R+G  KEA+E +  +P  P +  W ALLG C+ H + E+GE 
Sbjct: 534 HKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGER 593

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
             R+++ L P+    +V+LSN  +  G W NV  IR  M + G+ + PGCS IE    VH
Sbjct: 594 LGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVH 653

Query: 491 VFVTGDRNH-------HMNDEIYAVLR 510
            F+ GD+ H       HM D + A L+
Sbjct: 654 EFLAGDKTHPQINDIEHMLDVVAAKLK 680



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 216/453 (47%), Gaps = 76/453 (16%)

Query: 63  QVFDEVPDLNVVSATTII-GRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           ++F+ + + N  +  TI+      Q+   +A+  +   L  + +P  +T+  ++    A 
Sbjct: 59  RIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAAR 118

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
                G+QLHA A   G   +V+V + +++LY    S+  A RVFE++   ++VS+ T++
Sbjct: 119 VSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLL 178

Query: 182 CGLLKRERFEDALKLFQEMPHRN---------------------------------VVSW 208
            G ++    E+A ++F+ MP RN                                 +VSW
Sbjct: 179 AGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSW 238

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
           +AM+  Y Q    EEA+ LF+EM   G+  +   +  A+ A + +  + MG+  H  AVK
Sbjct: 239 SAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVK 298

Query: 269 F------------------LGK--------------LDVFVGNSLISFYAKCGSMEDSLL 296
                               G+              LD+   NS+IS Y +CGS++D+ +
Sbjct: 299 VGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEM 358

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F  + E+++V+W+A+I GYAQ+    EA+  F+ M+++G+RP+   L+  + AC H   
Sbjct: 359 LFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLAT 418

Query: 357 VEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           ++ G   ++Y S+ KL+   +L       ++D+  + G  + A E  Y +  + G+  W 
Sbjct: 419 LDLGKWIHAYISRNKLQVNVILS----TTLIDMYMKCGCVENALEVFYAME-EKGVSTWN 473

Query: 414 ALLGGCQIHSNVE--LGEFAARRILALDPEDVS 444
           A++ G  ++ +VE  L  FA  +     P +++
Sbjct: 474 AVILGLAMNGSVEQSLNMFADMKKTGTVPNEIT 506



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 8/188 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D       +F  +P+ +VVS + +I  +A+   + EA+ LF  M L  +RP E  
Sbjct: 350 CGSIQD----AEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETA 405

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             S I + T L  L+LGK +HA+ ++  LQ NV + + ++D+Y+K   +E A  VF    
Sbjct: 406 LVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAME 465

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVN 226
              V ++  +I GL      E +L +F +M       N +++  ++G     G   +  +
Sbjct: 466 EKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRH 525

Query: 227 LFIEMLRE 234
            F  M+ E
Sbjct: 526 YFNSMIHE 533


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 162/493 (32%), Positives = 267/493 (54%), Gaps = 42/493 (8%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFD 66
           +C SS  L K   +H  A   L +T+         P +    +   ++         VF+
Sbjct: 262 VCLSSAVLGK--GIHGCAVKTLCDTE---------PHVGGALLDMYAKCGYIEDARTVFE 310

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
            +P  +V+  + +I R+A+ +  E+A  +F RM+  ++ P+EF+   V+ +   +  L+L
Sbjct: 311 IIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDL 370

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+Q+H    K+G +S +FVG+A++D+Y K  ++E                          
Sbjct: 371 GQQIHNLVIKLGYESELFVGNALMDVYAKCRNME-------------------------- 404

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                ++L++F+ +   N VSWN +I GY Q+G  E+A+++F EM    ++    T    
Sbjct: 405 -----NSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSV 459

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A AN A++      H+   K     D  V NSLI  YAKCG + D+L VF+ + + ++
Sbjct: 460 LRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDV 519

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           V+WNA+I GYA +GR  +A+E F RM  +  +PN VT + LL  C  TGLV +G S F+ 
Sbjct: 520 VSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNS 579

Query: 367 AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
             ++       +HY C+V LL R+GR  +A +F+ D+P  P    W+ALL  C +H NV 
Sbjct: 580 MTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVA 639

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           LG+F+A ++L ++P+D ++YV+LSN  + AG  D V+ +R+ M+  G+ +  G SW+EIK
Sbjct: 640 LGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIK 699

Query: 487 SKVHVFVTGDRNH 499
            +VH F  G  +H
Sbjct: 700 GEVHAFSVGSADH 712



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 152/303 (50%), Gaps = 31/303 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            ++  ++FD +P+ N+VS  T++  +A +  +EEA  LF R+       + F   +++  
Sbjct: 100 LAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKV 159

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             A++   L   +HA A K+G   N FVGS+++D Y                        
Sbjct: 160 LVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAY------------------------ 195

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
              +CG +   R      +F  +  ++ V+W AM+  YS+    E+A+N F +M   G  
Sbjct: 196 --SLCGAVSHARC-----VFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAK 248

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN   L   + AA  +++  +GK  H CAVK L   +  VG +L+  YAKCG +ED+  V
Sbjct: 249 PNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTV 308

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +   +++ W+ +I  YAQ+ + E+A E F RM  + + PN  +L G+L AC +   +
Sbjct: 309 FEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFL 368

Query: 358 EKG 360
           + G
Sbjct: 369 DLG 371



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 39/298 (13%)

Query: 123 DLNLGKQLHAWATKVG--LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           D   G+ +HA   + G   Q + F  + +L+LY KL  +  A R+F+     N+VS+ T+
Sbjct: 62  DARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTL 121

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           + G                          A+ GG+      EEA  LF  + REG   NH
Sbjct: 122 VQGY-------------------------ALRGGF------EEAAGLFRRLQREGHEVNH 150

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
             L   +     + A G+    HACA K     + FVG+SLI  Y+ CG++  +  VFD 
Sbjct: 151 FVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDG 210

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA--CNHTGLVE 358
           +  ++ VTW A++  Y++N   E+A+  F +MR+ G +PN   L  +L A  C  + ++ 
Sbjct: 211 IIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLG 270

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           KG    +   L D    +P     ++D+ ++ G  ++A+     +P D  I  W  L+
Sbjct: 271 KGIHGCAVKTLCDT---EPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVI-LWSFLI 324



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 11/148 (7%)

Query: 220 RNEEAVNLFIEMLREGL----VPNHSTLPCAIIAAANIAA--LGMGKSFHACAVKFLG-- 271
           R   A N  ++ L + L    +P   +  CA +    IA      G++ HA  V+  G  
Sbjct: 21  RRNLAANAALQWLDDELASLALPKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVA 80

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           +LD F  N L++ YAK G +  +  +FD + ERN+V++  ++ GYA  G  EEA   F R
Sbjct: 81  QLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRR 140

Query: 332 MRINGIRPNG---VTLLGLLWACNHTGL 356
           ++  G   N     T+L +L A +  GL
Sbjct: 141 LQREGHEVNHFVLTTILKVLVAMDAPGL 168


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 249/458 (54%), Gaps = 35/458 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG   D      ++FDE+P+ +V S  T++G      ++ EA  LF  M         
Sbjct: 164 VKCGLMLD----ARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRS 219

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF ++I +S  L  + +GKQ+H+ A K G+  + FV  A++D+Y K  SIE+A  VF+ 
Sbjct: 220 RTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFD- 278

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                         +MP +  V WN++I  Y+  G +EEA++L+
Sbjct: 279 ------------------------------QMPEKTTVGWNSIIASYALHGYSEEALSLY 308

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM   G   +H T+   I   A +A+L   K  HA  V+     D+    +L+ FY+K 
Sbjct: 309 FEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKW 368

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G MED+  VF+++  +N+++WNA+I GY  +G+G+EA+E FE+M   G+ P  VT L +L
Sbjct: 369 GRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVL 428

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+++GL ++G+  F   K +     +  HYACM++LL R     EA   +   PF P 
Sbjct: 429 SACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPT 488

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W ALL  C++H N+ELG+ AA ++  ++PE + +Y++L N  + +GK    + I + 
Sbjct: 489 ANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQT 548

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           +K+KG+  +P CSW+E+K + + F+ GD++H    EIY
Sbjct: 549 LKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIY 586



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 186/421 (44%), Gaps = 77/421 (18%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T+ +++ +   L  +   K++  +    G + +++V + +L +++K   + +A ++F++ 
Sbjct: 120 TYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEM 179

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              +V S+ TM+ GL+    F +A +LF  M       W     G S+T         F 
Sbjct: 180 PEKDVASWMTMVGGLVDTGNFSEAFRLFLCM-------WKEFNDGRSRT---------FA 223

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            M+R               A+A +  + +GK  H+CA+K     D FV  +LI  Y+KCG
Sbjct: 224 TMIR---------------ASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCG 268

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           S+ED+  VFD++ E+  V WN++I  YA +G  EEA+  +  MR +G   +  T+  ++ 
Sbjct: 269 SIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIR 328

Query: 350 AC-----------NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
            C            H  LV  G++    A               +VD  S+ GR ++A+ 
Sbjct: 329 ICARLASLEHAKQAHAALVRHGFATDIVAN------------TALVDFYSKWGRMEDARH 376

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSN----VELGEFAARRILALDPEDVSSYVMLSNALS 454
               +     I  W AL+ G   H      VE+ E   +    + P  V+   +LS A S
Sbjct: 377 VFNRMRHKNVIS-WNALIAGYGNHGQGQEAVEMFEQMLQE--GVTPTHVTFLAVLS-ACS 432

Query: 455 VAG----KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
            +G     W+   +++R+ K K       C  IE+  +  +           DE YA++R
Sbjct: 433 YSGLSQRGWEIFYSMKRDHKVKPRAMHYAC-MIELLGRESLL----------DEAYALIR 481

Query: 511 S 511
           +
Sbjct: 482 T 482



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 8/211 (3%)

Query: 220 RNEEAVNLF--IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
           R+ EA+ LF  +E+  +G     ST    + A   + ++   K      +    + D++V
Sbjct: 96  RHREAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYV 155

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N ++  + KCG M D+  +FD++ E+++ +W  ++ G    G   EA   F  M     
Sbjct: 156 MNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFN 215

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKE 395
                T   ++ A    GLV+ G    S A     G    +H+    ++D+ S+ G  ++
Sbjct: 216 DGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVG---DDHFVSCALIDMYSKCGSIED 272

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           A      +P    +G W +++    +H   E
Sbjct: 273 AHCVFDQMPEKTTVG-WNSIIASYALHGYSE 302


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/432 (36%), Positives = 244/432 (56%), Gaps = 5/432 (1%)

Query: 90  EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAI 149
           + ++ L+ RML  +   + +TF  ++ + + L       Q+HA  TK G   +++  +++
Sbjct: 92  DRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSL 151

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN-VVSW 208
           ++ Y    + + A  +F+    P+ VS+ ++I G +K    + AL LF++MP +N  +SW
Sbjct: 152 INSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISW 211

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
             MI GY Q G N+EA+ LF EM    + P++ +L  A+ A + + AL  GK  H+ A K
Sbjct: 212 TTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANK 271

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
              ++D  +   LI  YAKCG ME++L VF  +  +++  W A+I GYA +G G EAI  
Sbjct: 272 TRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISK 331

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDL 386
           F  M+  G++PN +T   +L AC++TGLVE+G S F+   +E    LKP  EHY CMVDL
Sbjct: 332 FLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNT--IERDYNLKPTIEHYGCMVDL 389

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446
           L R+G   EA  F+  +P  P    W +LL  CQIH N+ELGE     ++ +D      Y
Sbjct: 390 LGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRY 449

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           V ++N  ++  KWD  +  RR M+E+G+ +VPGCS I ++   H F+ GDR+H    EI 
Sbjct: 450 VHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQEIR 509

Query: 507 AVLRSCTEQIRE 518
              R    ++ E
Sbjct: 510 TKWRFVRRKLEE 521



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 43/266 (16%)

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           WN MI G S + + + ++ L+  ML      N  T P  + A +N++A       HA   
Sbjct: 78  WNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHIT 137

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV--------------- 312
           KF    D++  NSLI+ YA  G+ + + L+FD++ E + V+WN+V               
Sbjct: 138 KFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALT 197

Query: 313 -----------------ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
                            I GY Q G  +EA++ F  M+ + + P+ V+L   L AC+  G
Sbjct: 198 LFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLG 257

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            +E+G   +SY ++ +     +L       ++D+ ++ G  +EA     ++     +  W
Sbjct: 258 ALEQGKWIHSYANKTRTRIDSVL----CCVLIDMYAKCGEMEEALGVFKNMK-TKSVQVW 312

Query: 413 KALLGGCQIHSNVELGEFAARRILAL 438
            AL+ G   H    LG  A  + L +
Sbjct: 313 TALISGYAYHG---LGREAISKFLEM 335



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 110/253 (43%), Gaps = 34/253 (13%)

Query: 64  VFDEVPDLN-VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +F ++P+ N  +S TT+I  + +    +EA+ LF  M   N+ P   +  S + + + L 
Sbjct: 198 LFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLG 257

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GK +H++A K   + +  +   ++D+Y K   +EEA  VF++              
Sbjct: 258 ALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKN-------------- 303

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            M  ++V  W A+I GY+  G   EA++ F+EM   G+ PN  T
Sbjct: 304 -----------------MKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAIT 346

Query: 243 LPCAIIAAANIAALGMGKS-FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
               + A +    +  GKS F+     +  K  +     ++    + G + ++     K+
Sbjct: 347 FTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKM 406

Query: 302 TER-NIVTWNAVI 313
             + N V W +++
Sbjct: 407 PLKPNAVIWGSLL 419


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 156/431 (36%), Positives = 246/431 (57%), Gaps = 30/431 (6%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  + +    E+A+ LF++M   +I    +T+ SV  +  AL+ L+LGK++HA A K G
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSG 405

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+ N          Y+ +S               N V+     CG L     ED  K+F 
Sbjct: 406 LEVN----------YVSIS---------------NAVANAYAKCGSL-----EDVRKVFN 435

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            M  R+++SW +++  YSQ    ++A+ +F  M  EG+ PN  T    +++ AN+  L  
Sbjct: 436 RMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEY 495

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+  H    K    +D  + ++L+  YAKCG + D+  VF++++  + V+W A+I G+AQ
Sbjct: 496 GQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQ 555

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +G  ++A++ F RM   G+ PN VT L +L+AC+H GLVE+G  YF   K     + + E
Sbjct: 556 HGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEME 615

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           HYAC+VDLLSR G   +A EF+  +P +P    W+ LLG C++H NVELGE AA++IL+ 
Sbjct: 616 HYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSF 675

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
             E+ ++YV+LSN    +G + +  ++R  MKE+G+ + PGCSWI +   +H F  GD+ 
Sbjct: 676 KAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQQ 735

Query: 499 HHMNDEIYAVL 509
           H   D+IYA L
Sbjct: 736 HPEKDKIYAKL 746



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 33/287 (11%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+     +  ++FD++   N  S T +I   A+   + +    F  M    I P +F + 
Sbjct: 116 SKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYS 175

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            ++     L+ + LG  +HA     G  S+ FV +A+L++Y KL  IE            
Sbjct: 176 GILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIE------------ 223

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                              D+ K+F  M   NVVSWNAMI G++      +A +LF+ M+
Sbjct: 224 -------------------DSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMM 264

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            EG+ P+  T      A   +  +   K     A++     +  VG +LI   +KCGS++
Sbjct: 265 GEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQ 324

Query: 293 DSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           ++  +F+   +T R    WNA+I GY ++G  E+A+E F +M  N I
Sbjct: 325 EARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDI 371



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 128/256 (50%), Gaps = 15/256 (5%)

Query: 12  LSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           LSL K  K+H+ A    +E    S+    + A+      CGS  D    V +VF+ + D 
Sbjct: 391 LSLGK--KVHARAIKSGLEVNYVSI----SNAVANAYAKCGSLED----VRKVFNRMEDR 440

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           +++S T+++  +++   +++AI +FS M    I P++FTF SV+ S   L  L  G+Q+H
Sbjct: 441 DLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVH 500

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
               KVGL  +  + SA++D+Y K   + +A +VF    N + VS+T +I G  +    +
Sbjct: 501 GIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVD 560

Query: 192 DALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCA 246
           DAL+LF+ M       N V++  ++   S  G  EE +  F  M +  GLVP      C 
Sbjct: 561 DALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACI 620

Query: 247 IIAAANIAALGMGKSF 262
           +   + +  L     F
Sbjct: 621 VDLLSRVGHLNDAMEF 636



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 7/215 (3%)

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K    + A +LF +M  RN  SW  +I G ++ G   +    F EM  +G+ P+      
Sbjct: 117 KCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSG 176

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            +     + ++ +G   HA  V        FV  +L++ YAK   +EDS  VF+ +TE N
Sbjct: 177 ILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVN 236

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           +V+WNA+I G+  N    +A + F RM   G+ P+  T +G+  A      V K     S
Sbjct: 237 VVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKE-VS 295

Query: 366 QAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAK 397
              LE   D   L       ++D+ S+ G  +EA+
Sbjct: 296 GYALELGVDSNTLVG---TALIDMNSKCGSLQEAR 327



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%)

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           KF     + + N +   Y+KC  ++ +  +FD++++RN  +W  +I G A+NG   +  E
Sbjct: 98  KFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFE 157

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           FF  M+  GI P+     G+L  C     +E G
Sbjct: 158 FFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 264/455 (58%), Gaps = 11/455 (2%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N++    +    + Q H   ++YL  RM    + P   TF  ++PS      L LG++ H
Sbjct: 28  NIIIRAIVHNVSSPQRHSPISVYL--RMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTH 85

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A     GL  + FV +++L++Y     +  A RVF+D+ + ++ ++ +++    K    +
Sbjct: 86  AQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLID 145

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML----REGLV-PNHSTLPCA 246
           DA KLF EMP RNV+SW+ +I GY   G+ +EA++LF EM      E  V PN  T+   
Sbjct: 146 DARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTV 205

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-TERN 305
           + A   + AL  GK  HA   K+  ++D+ +G +LI  YAKCGS+E +  VF+ L ++++
Sbjct: 206 LSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           +  ++A+IC  A  G  +E  + F  M   + I PN VT +G+L AC H GL+ +G SYF
Sbjct: 266 VKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYF 325

Query: 365 SQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            +  +E+ G+    +HY CMVDL  RSG  KEA+ F+  +P +P +  W +LL G ++  
Sbjct: 326 -KMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG 384

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           +++  E A +R++ LDP +  +YV+LSN  +  G+W  V  IR EM+ KG+ +VPGCS++
Sbjct: 385 DIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYV 444

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           E++  VH FV GD +   ++ IYA+L    +++RE
Sbjct: 445 EVEGVVHEFVVGDESQQESERIYAMLDEIMQRLRE 479



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 18/290 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-----IRPSEFTFGSVIPS 117
           ++FDE+P+ NV+S + +I  +     Y+EA+ LF  M L       +RP+EFT  +V+ +
Sbjct: 149 KLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSA 208

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVS 176
              L  L  GK +HA+  K  ++ ++ +G+A++D+Y K  S+E A RVF       +V +
Sbjct: 209 CGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKA 268

Query: 177 YTTMICGLLKRERFEDALKLFQEMP-----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           Y+ MIC L      ++  +LF EM      + N V++  ++G     G   E  + F  M
Sbjct: 269 YSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMM 328

Query: 232 LRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           + E G+ P+     C +        +   +SF A       + DV +  SL+S     G 
Sbjct: 329 IEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIA---SMPMEPDVLIWGSLLSGSRMLGD 385

Query: 291 MEDSLLVFDKLTERNIVTWNAVIC---GYAQNGRGEEAIEFFERMRINGI 337
           ++       +L E + +   A +     YA+ GR  E       M + GI
Sbjct: 386 IKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGI 435


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 158/461 (34%), Positives = 264/461 (57%), Gaps = 8/461 (1%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSST 119
           +QV D   +  + +  ++I   +K      + + +SR+L     + P  +TF  ++ +S 
Sbjct: 63  NQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSA 122

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            L     G  +H  A K G + +  V S ++ +Y +L  ++   RVF     P++V  T 
Sbjct: 123 QLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTA 182

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           M+    K      A KLF +M H++ ++WNAMI GY Q G++ EA++LF  M REG+  N
Sbjct: 183 MVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVN 242

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             ++   + A +++ AL  G+  HA   +   ++ + +G +LI  YAKCG+M  ++ VF 
Sbjct: 243 EVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFW 302

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + E+N+ TW++ I G A NG GE+ +E F  M+ + ++PN +T + +L  C+  GLVE+
Sbjct: 303 GMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEE 362

Query: 360 GYSYF-SQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G  +F S +K+     ++P  EHY CMVDL  R+G   EA  F+  +P  P +G W ALL
Sbjct: 363 GRKHFESMSKVYG---IEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALL 419

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C+I+ N+E+GE A+R+I+ L+ ++  +YV+LSN  + +  WD VSN+R+ M  KG+ +
Sbjct: 420 NACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRK 479

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            PGCS IE+  +VH F  GD++H    EI  +L   + +++
Sbjct: 480 QPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLK 520



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 5/208 (2%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104
           +T  VS  ++        ++FD++   + ++   +I  + +     EA+ LF+ M    +
Sbjct: 180 QTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGV 239

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           + +E +  SV+ + + L  L+ G+  HA+  +  L+  + +G+A++D+Y K  ++ +A  
Sbjct: 240 KVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAME 299

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLF----QEMPHRNVVSWNAMIGGYSQTGR 220
           VF      NV ++++ I GL      E  L+LF    Q+    N +++ +++ G S  G 
Sbjct: 300 VFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGL 359

Query: 221 NEEAVNLFIEMLR-EGLVPNHSTLPCAI 247
            EE    F  M +  G+ P      C +
Sbjct: 360 VEEGRKHFESMSKVYGIEPRLEHYGCMV 387


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/516 (32%), Positives = 282/516 (54%), Gaps = 40/516 (7%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I LL  C SS   +KL ++H+ +  + +      + K     I        S S   S  
Sbjct: 21  ISLLQFCASSK--HKLKQIHAFSIRHGVSLNNPDMGKHLIFTIV-------SLSAPMSYA 71

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           + VF  + + NV +  TII  +A+  +   A   + +M++  + P   T+  ++ + +  
Sbjct: 72  YNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKS 131

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            ++  G+ +H+   + G +S VFV +++L +Y                            
Sbjct: 132 LNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAA-------------------------- 165

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG       E A K+F+ M  R++V+WN+MI G++  GR  EA+ LF EM  EG+ P+  
Sbjct: 166 CG-----DTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGF 220

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A+A + AL +G+  H   +K     +  V NSL+  YAKCG++ ++  VF ++
Sbjct: 221 TVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEM 280

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           +ERN V+W ++I G A NG GEEA+E F+ M   G+ P+ +T +G+L+AC+H G++++G+
Sbjct: 281 SERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGF 340

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            YF + K E   + + EHY CMVDLLSR+G  K+A E++ ++P  P    W+ LLG C I
Sbjct: 341 EYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTI 400

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H ++ LGE A   +L L+P+    YV+LSN  +   +W +V  IRR M + G+ + PG S
Sbjct: 401 HGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYS 460

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +E+ ++V+ F  GDR+H  + ++YA+L   TE ++
Sbjct: 461 LVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLK 496


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 255/469 (54%), Gaps = 35/469 (7%)

Query: 43   AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
            A+ T    CGS  D  S    VF  + + +VV+  ++I  F +   +++A+ LF  M   
Sbjct: 790  ALLTMYYKCGSTEDADS----VFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKE 845

Query: 103  NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
             ++       SVI +   LE++ LG  +H +A K GL+S+VFV  +++D+Y K    E A
Sbjct: 846  GVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESA 905

Query: 163  TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
              VF                                 MP++N+V+WN+MI  YS  G  E
Sbjct: 906  EMVF-------------------------------SSMPNKNLVAWNSMISCYSWNGLPE 934

Query: 223  EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
             ++NL  ++L+ G   +  ++   ++A +++AAL  GK+ HA  ++     D+ V N+LI
Sbjct: 935  MSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALI 994

Query: 283  SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
              Y KCG ++ + L+F+ +  RN+VTWN++I GY  +G  EEA+  F+ M+ +   P+ V
Sbjct: 995  DMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEV 1054

Query: 343  TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
            T L L+ +C+H+G+VE+G + F   ++E     + EHYA +VDLL R+GR  +A  F+  
Sbjct: 1055 TFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRG 1114

Query: 403  LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
            +P D     W  LL  C+ H N+ELGE  A  +L ++P   S+YV L N       WD  
Sbjct: 1115 MPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRA 1174

Query: 463  SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
            +N+R  MK +G+ + PGCSWIE+K++V VF +GD +     EIY  L S
Sbjct: 1175 ANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKTLSS 1223



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 182/388 (46%), Gaps = 35/388 (9%)

Query: 40   ETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
            + P + T  ++  ++S       +VFD+V D  V     +I  F       +A+ L+++M
Sbjct: 682  DDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM 741

Query: 100  LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
                     FT  S++   + +   + G+ +HA   K  +QSNV + SA+L +Y K  S 
Sbjct: 742  KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGST 801

Query: 160  EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
            E+A  VF          YT                     M  R+VV+W +MI G+ Q  
Sbjct: 802  EDADSVF----------YT---------------------MKERDVVAWGSMIAGFCQNR 830

Query: 220  RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
            R ++A++LF  M +EG+  +   +   I A   +  + +G   H  A+K   + DVFV  
Sbjct: 831  RFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVAC 890

Query: 280  SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
            SL+  Y+K G  E + +VF  +  +N+V WN++I  Y+ NG  E +I    ++  +G   
Sbjct: 891  SLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYL 950

Query: 340  NGVTLLGLLWACNHTGLVEKGYSYFS-QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
            + V++  +L A +    + KG +  + Q +L+ P  L+ E+   ++D+  + G  K A+ 
Sbjct: 951  DSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVEN--ALIDMYVKCGCLKYAQL 1008

Query: 399  FLYDLPFDPGIGFWKALLGGCQIHSNVE 426
               ++P    +  W +++ G   H N E
Sbjct: 1009 IFENMP-RRNLVTWNSMIAGYGSHGNCE 1035



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 158/376 (42%), Gaps = 47/376 (12%)

Query: 52  GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           GS    F  + +  D  PD+ V +   +I  + K  H+EE +  F RM  L IRP  ++ 
Sbjct: 493 GSALQVFDKMSESRDSAPDITVWNP--VIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSL 550

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
             V+     L     G+Q+H +  +   + + ++ +A++ +Y   S   EA  +F    N
Sbjct: 551 SIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLEN 610

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                                           N+V+WN MIGG+ + G  E+++ L+   
Sbjct: 611 ------------------------------RSNIVAWNVMIGGFVENGMWEKSLELYSLA 640

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             E      ++   A  A ++   L  G+  H   +K   + D +V  SL++ YAK GS+
Sbjct: 641 KNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSV 700

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           ED+  VFD++ ++ +   NA+I  +  NGR  +A+  + +M+      +  T+  LL  C
Sbjct: 701 EDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGC 760

Query: 352 NHTGLVEKGYSYFS-------QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +  G  + G +  +       Q+ +     L   +Y C        G  ++A    Y + 
Sbjct: 761 SVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKC--------GSTEDADSVFYTMK 812

Query: 405 FDPGIGFWKALLGGCQ 420
               + +   + G CQ
Sbjct: 813 ERDVVAWGSMIAGFCQ 828



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 184/414 (44%), Gaps = 64/414 (15%)

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           I    +Q  Y +A+ L S+     +  ++FTF S++ +  +L +L  G+ +HA    +GL
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           QS+ ++ ++++++Y+K                          CGLL       AL++F +
Sbjct: 473 QSDPYIATSLINMYVK--------------------------CGLLG-----SALQVFDK 501

Query: 200 MPHR-----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254
           M        ++  WN +I GY + G  EE +  F  M   G+ P+  +L   +     ++
Sbjct: 502 MSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLS 561

Query: 255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-NIVTWNAVI 313
               G+  H   ++ + + D ++  +LI  Y+ C    ++  +F KL  R NIV WN +I
Sbjct: 562 WYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMI 621

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            G+ +NG  E+++E +   +    +    +  G   AC+H  +++ G     Q   +   
Sbjct: 622 GGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFG----RQVHCDVIK 677

Query: 374 M-LKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG----------GCQ 420
           M  + + Y C  ++ + ++SG  ++AK+ ++D   D  +    A++              
Sbjct: 678 MNFQDDPYVCTSLLTMYAKSGSVEDAKK-VFDQVLDKEVELRNAMISAFIGNGRAYDALG 736

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           +++ ++ GE          P D  +   L +  SV G +D    +  E+ ++ M
Sbjct: 737 LYNKMKAGE---------TPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSM 781


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 246/441 (55%), Gaps = 5/441 (1%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STALEDLNLGKQLHA 132
           V+   +I    +   + E+   F  M      P+  T+ SV+ +      D+ LG Q+H 
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
                G+  ++ V +A++D+Y + + +  A +VF+     +VVS+T+++ GL +  + ++
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A  LF  MP R+ VSW AMI GY    R  EA+ +F EM    +  +  T+   I A A 
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           + AL MG+       +   K+D FVGN+LI  Y+KCGS+E +L VF  +  R+  TW A+
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           I G A NG  EEAIE F RM      P+ VT +G+L AC H GLV+KG  +F    + + 
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFF--LSMIEA 385

Query: 373 GMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
             + P   HY C++DLL R+G+  EA + +  +P  P    W  LL  C++H N E+GE 
Sbjct: 386 YNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGEL 445

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
            A R+L LDPE+   Y++LSN  +   +W++V  +R  + EKG+ + PGCS IE+   +H
Sbjct: 446 VAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIH 505

Query: 491 VFVTGDRNHHMNDEIYAVLRS 511
            FV GD++H M+ EIY+ L S
Sbjct: 506 EFVAGDQSHPMSKEIYSKLES 526



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +      +FD +P+ + VS T +I  +     + EA+ +F  M   N+   EFT  SVI 
Sbjct: 204 QVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVIT 263

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L +G+ +  + ++ G++ + FVG+A++D+Y K  SIE A  VF+  H+ +  +
Sbjct: 264 ACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFT 323

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +T +I GL      E+A+++F  M               S+T      + +       GL
Sbjct: 324 WTAIILGLAVNGYEEEAIEMFHRMIR------------VSETPDEVTFIGVLTACTHAGL 371

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
           V        ++I A NIA        + C +  LG+
Sbjct: 372 VDKGREFFLSMIEAYNIAP---NVVHYGCIIDLLGR 404



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 161/412 (39%), Gaps = 78/412 (18%)

Query: 90  EEAIYLFSRMLLLNIRPSEFTFGSVIP----SSTALEDLNLGKQLHAWATKVGLQSNVFV 145
           E+A+  ++RML    RP  +TF +++     ++         + +HA   ++G+  N  V
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 146 GSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
            S+++  Y        A  +  +   P                                 
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGECDTP--------------------------------- 87

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN-IAALGMGKSFHA 264
           V+WNA+I G+++ GR  E+   F++M R G  P   T    + A       + +G   H 
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 265 CAVKFLGKLDVFVGNSLISFYAKC-------------------------------GSMED 293
             V      D+ V N+L+  YA+C                               G +++
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +FD++ ER+ V+W A+I GY    R  EA+E F  M+ + +  +  T++ ++ AC  
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 354 TGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            G +E G     Y S+  ++    +       ++D+ S+ G  + A +    +       
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGN----ALIDMYSKCGSIERALDVFKGMHHRDKF- 322

Query: 411 FWKALLGGCQIHSNVELG-EFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
            W A++ G  ++   E   E   R I   +  D  +++ +  A + AG  D 
Sbjct: 323 TWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDK 374


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 255/469 (54%), Gaps = 35/469 (7%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T    CGS  D  S    VF  + + +VV+  ++I  F +   +++A+ LF  M   
Sbjct: 385 ALLTMYYKCGSTEDADS----VFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKE 440

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            ++       SVI +   LE++ LG  +H +A K GL+S+VFV  +++D+Y K    E A
Sbjct: 441 GVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESA 500

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF                                 MP++N+V+WN+MI  YS  G  E
Sbjct: 501 EMVF-------------------------------SSMPNKNLVAWNSMISCYSWNGLPE 529

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
            ++NL  ++L+ G   +  ++   ++A +++AAL  GK+ HA  ++     D+ V N+LI
Sbjct: 530 MSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALI 589

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y KCG ++ + L+F+ +  RN+VTWN++I GY  +G  EEA+  F+ M+ +   P+ V
Sbjct: 590 DMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEV 649

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T L L+ +C+H+G+VE+G + F   ++E     + EHYA +VDLL R+GR  +A  F+  
Sbjct: 650 TFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRG 709

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P D     W  LL  C+ H N+ELGE  A  +L ++P   S+YV L N       WD  
Sbjct: 710 MPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRA 769

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
           +N+R  MK +G+ + PGCSWIE+K++V VF +GD +     EIY  L S
Sbjct: 770 ANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKTLSS 818



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 182/388 (46%), Gaps = 35/388 (9%)

Query: 40  ETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           + P + T  ++  ++S       +VFD+V D  V     +I  F       +A+ L+++M
Sbjct: 277 DDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM 336

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
                    FT  S++   + +   + G+ +HA   K  +QSNV + SA+L +Y K  S 
Sbjct: 337 KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGST 396

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
           E+A  VF          YT                     M  R+VV+W +MI G+ Q  
Sbjct: 397 EDADSVF----------YT---------------------MKERDVVAWGSMIAGFCQNR 425

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
           R ++A++LF  M +EG+  +   +   I A   +  + +G   H  A+K   + DVFV  
Sbjct: 426 RFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVAC 485

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           SL+  Y+K G  E + +VF  +  +N+V WN++I  Y+ NG  E +I    ++  +G   
Sbjct: 486 SLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYL 545

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFS-QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           + V++  +L A +    + KG +  + Q +L+ P  L+ E+   ++D+  + G  K A+ 
Sbjct: 546 DSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVEN--ALIDMYVKCGCLKYAQL 603

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVE 426
              ++P    +  W +++ G   H N E
Sbjct: 604 IFENMP-RRNLVTWNSMIAGYGSHGNCE 630



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 184/430 (42%), Gaps = 78/430 (18%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S KF S+ Q  +  P +N     + I    +Q  Y +A+ L S+     +  ++FTF S+
Sbjct: 8   SRKFYSLRQT-EVSPSIN-----SKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSL 61

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--- 171
           + +  +L +L  G+ +HA    +GLQS+ ++ ++++++Y+K   +  A +VF+       
Sbjct: 62  LKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRD 121

Query: 172 --PNVVSYTTMICGLLKRERFEDAL----------------------------------- 194
             P++  +  +I G  K   FE+ L                                   
Sbjct: 122 SAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLET 181

Query: 195 ----------------KLFQEMPHR-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                            LF ++ +R N+V+WN MIGG+ + G  E+++ L+     E   
Sbjct: 182 ALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCK 241

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
              ++   A  A ++   L  G+  H   +K   + D +V  SL++ YAK GS+ED+  V
Sbjct: 242 LVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKV 301

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD++ ++ +   NA+I  +  NGR  +A+  + +M+      +  T+  LL  C+  G  
Sbjct: 302 FDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSY 361

Query: 358 EKGYSYFS-------QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           + G +  +       Q+ +     L   +Y C        G  ++A    Y +     + 
Sbjct: 362 DFGRTVHAEVIKRSMQSNVAIQSALLTMYYKC--------GSTEDADSVFYTMKERDVVA 413

Query: 411 FWKALLGGCQ 420
           +   + G CQ
Sbjct: 414 WGSMIAGFCQ 423


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 264/478 (55%), Gaps = 45/478 (9%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+  ++     +  + FD +P+ +VVS   ++  +A+    EEA+ LF  M+   I 
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIE 257

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P E T+ +VI + ++  D  L   L     +  +Q N FV +A+LD+Y K   ++ A   
Sbjct: 258 PDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSAR-- 315

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
                                        KLF  MP RNVV+WN+MI GY+Q G++  A+
Sbjct: 316 -----------------------------KLFNTMPGRNVVTWNSMIAGYAQNGQSAMAI 346

Query: 226 NLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG----KLDVFVGNS 280
            LF EM+  + L P+  T+   I A  ++ AL +G       V+FL     KL +   N+
Sbjct: 347 ELFKEMITAKKLTPDEVTMVSVISACGHLGALELGN----WVVRFLTENQIKLSISGHNA 402

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           +I  Y++CGSMED+  VF ++  R++V++N +I G+A +G G EAI     M+  GI P+
Sbjct: 403 MIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPD 462

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            VT +G+L AC+H GL+E+G   F   K  DP +   +HYACMVDLL R G  ++AK  +
Sbjct: 463 RVTFIGVLTACSHAGLLEEGRKVFESIK--DPAI---DHYACMVDLLGRVGELEDAKRTM 517

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             +P +P  G + +LL   +IH  VELGE AA ++  L+P++  ++++LSN  + AG+W 
Sbjct: 518 ERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWK 577

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +V  IR  MK+ G+ +  G SW+E   K+H F+  DR+H  +D+IY +L    +++RE
Sbjct: 578 DVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMRE 635



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 194/397 (48%), Gaps = 41/397 (10%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H +F+   + NV   T+++  ++    + + + ++ +M    +RP  F +  +I S+   
Sbjct: 54  HLLFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-- 111

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---------- 171
                G   HA   K+G  S+ FV +A++D+Y +L  I  A +VF++  +          
Sbjct: 112 ---TGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNA 168

Query: 172 -----------------------PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
                                   NV+++T M+ G  K +  E A + F  MP R+VVSW
Sbjct: 169 MVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSW 228

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
           NAM+ GY+Q G  EEA+ LF EM+  G+ P+ +T    I A ++     +  S      +
Sbjct: 229 NAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQ 288

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
              +L+ FV  +L+  YAK G ++ +  +F+ +  RN+VTWN++I GYAQNG+   AIE 
Sbjct: 289 KRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIEL 348

Query: 329 FERM-RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
           F+ M     + P+ VT++ ++ AC H G +E G ++  +   E+   L    +  M+ + 
Sbjct: 349 FKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMY 407

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
           SR G  ++AK    ++     + +   L+ G   H +
Sbjct: 408 SRCGSMEDAKRVFQEMATRDVVSY-NTLISGFAAHGH 443



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 43/242 (17%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL- 102
           +RT  +   ++     S  ++F+ +P  NVV+  ++I  +A+      AI LF  M+   
Sbjct: 297 VRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAK 356

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P E T  SVI +   L  L LG  +  + T+  ++ ++   +A++ +Y +  S+E+A
Sbjct: 357 KLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDA 416

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            RVF++    +VVSY                               N +I G++  G   
Sbjct: 417 KRVFQEMATRDVVSY-------------------------------NTLISGFAAHGHGV 445

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF-----------HACAVKFLG 271
           EA+NL   M   G+ P+  T    + A ++   L  G+             +AC V  LG
Sbjct: 446 EAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLG 505

Query: 272 KL 273
           ++
Sbjct: 506 RV 507


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/506 (33%), Positives = 270/506 (53%), Gaps = 20/506 (3%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           + +L K H+L   Y +      V K+     R + +   S          +F EV D N 
Sbjct: 1   MAELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYAS---------FLFKEVIDPNA 51

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLN---------IRPSEFTFGSVIPSSTALEDL 124
                +I        Y   I  + +ML            I P EFTF  V+ +   L   
Sbjct: 52  YLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLH 111

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           NLGKQ+HA   K G +S++   +A++D+Y K  ++ +A  +F++ H    +S+  +I G 
Sbjct: 112 NLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGH 171

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           ++  +   A  LF EMP+R +VSW A+I GY++ G   +A+++F EM   G+ P+ +++ 
Sbjct: 172 VRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASII 231

Query: 245 CAIIAAANIAALGMGKSFHA-CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
             + A A + AL  GK  H  CA   L +    + N+LI  Y KCG ++ +  +FD++  
Sbjct: 232 SVLPACAKLGALETGKWIHMFCARNGLLR-RTCICNALIEMYTKCGCIDQACQLFDQMRG 290

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R++++W+ +I G A +G+  EAI  FERM+   I+PNG+T +GLL AC H G  E+G  Y
Sbjct: 291 RDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMY 350

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F   K +     + EHY  +VDLL R+GR  +A + +  +P  P    W +LL  C+ H 
Sbjct: 351 FDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHC 410

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N+E+   A   +  L+P+D  +YV+LSN  +  GKWD+VS +R+ ++ K M + PGCS I
Sbjct: 411 NIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLI 470

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVL 509
           E+ +    FV+GD +   + EI+ +L
Sbjct: 471 EVNNVAQEFVSGDDSKPYSKEIFWLL 496


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 260/466 (55%), Gaps = 32/466 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S    + S +Q+F  +   NVVS T +I  + +   +++   L   M+L  I+P  F   
Sbjct: 557 SNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVT 616

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+      E L  GK +H +A + G++  + V +A++++Y+   ++EEA  VF+   N 
Sbjct: 617 SVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTN- 675

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                         ++++SWN +IGGYS+     E+ +LF +ML
Sbjct: 676 ------------------------------KDIISWNTLIGGYSRNNFANESFSLFSDML 705

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            +   PN  T+ C + A A+I++L  G+  HA A++     D +  N+L+  Y KCG++ 
Sbjct: 706 LQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALL 764

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            + ++FD+LT++N+++W  +I GY  +G G++A+  FE+MR +G+ P+  +   +L+AC 
Sbjct: 765 VARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACC 824

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+GL  +G+ +F+  + E     K +HY C+VDLLS +G  KEA EF+  +P +P    W
Sbjct: 825 HSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIW 884

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LL GC+IH +V+L E  A R+  L+PE+   YV+L+N  + A +W+ V  ++ ++  +
Sbjct: 885 VSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGR 944

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G+    GCSWIE++ KVHVF+  +RNH   + I   L     ++RE
Sbjct: 945 GLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRMRE 990



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 151/318 (47%), Gaps = 32/318 (10%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D      QVFD +   + +S  + I  +     ++ A+ LFS+M       S  T
Sbjct: 246 CGCMEDAM----QVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVT 301

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             SV+P+   L    +GK +H ++ K GL         + DL    S I+EA        
Sbjct: 302 VLSVLPACAELGFELVGKVVHGYSMKSGL---------LWDLESVQSGIDEAL------- 345

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNEEAVNLFI 229
             + + +  + CG +   R     ++F  MP + NV  WN ++GGY++    EE++ LF 
Sbjct: 346 -GSKLVFMYVKCGDMGSAR-----RVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFE 399

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M   G+ P+   L C +     ++    G   H   VK        V N+LISFYAK  
Sbjct: 400 QMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSN 459

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            +++++LVFD++  ++ ++WN+VI G   NG   EAIE F RM + G   +  TLL +L 
Sbjct: 460 MIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLP 519

Query: 350 ACNHT-----GLVEKGYS 362
           AC  +     G V  GYS
Sbjct: 520 ACARSHYWFVGRVVHGYS 537



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 161/371 (43%), Gaps = 38/371 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           V CG       S  +VFD +P   NV     I+G +AK   +EE++ LF +M  L I P 
Sbjct: 354 VKCGD----MGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPD 409

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           E     ++   T L     G   H +  K+G  +   V +A++  Y K + I+ A  VF+
Sbjct: 410 EHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFD 469

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                                           MPH++ +SWN++I G +  G N EA+ L
Sbjct: 470 -------------------------------RMPHQDTISWNSVISGCTSNGLNSEAIEL 498

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F+ M  +G   + +TL   + A A      +G+  H  +VK     +  + N+L+  Y+ 
Sbjct: 499 FVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSN 558

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C     +  +F  + ++N+V+W A+I  Y + G  ++     + M ++GI+P+   +  +
Sbjct: 559 CSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSV 618

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L        +++G S    A       L P   A M ++       +EA+  ++D   + 
Sbjct: 619 LHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALM-EMYVNCRNMEEAR-LVFDHVTNK 676

Query: 408 GIGFWKALLGG 418
            I  W  L+GG
Sbjct: 677 DIISWNTLIGG 687



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 48/315 (15%)

Query: 64  VFDEVPD--LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           VFDE+P    +V   T+++  +AK   ++E + LF +M    + P       V+    +L
Sbjct: 152 VFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASL 211

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +  G+ +H    K+GL     V +A++ LY +   +E+A +VF+  H  + +S+ + I
Sbjct: 212 GSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTI 271

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                                           GY   G ++ AV+LF +M  EG   +  
Sbjct: 272 -------------------------------SGYFSNGWHDRAVDLFSKMWSEGTEISSV 300

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVK---------FLGKLDVFVGNSLISFYAKCGSME 292
           T+   + A A +    +GK  H  ++K             +D  +G+ L+  Y KCG M 
Sbjct: 301 TVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMG 360

Query: 293 DSLLVFDKLTER-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL--- 348
            +  VFD +  + N+  WN ++ GYA+    EE++  FE+M   GI P+   L  LL   
Sbjct: 361 SARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCI 420

Query: 349 --WACNHTGLVEKGY 361
              +C   GLV  GY
Sbjct: 421 TCLSCARDGLVAHGY 435



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 121/255 (47%), Gaps = 22/255 (8%)

Query: 180 MICGLLKRERFEDALKLFQEMPHR--NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           ++   LK      A  +F EMP R  +V  W +++  Y++ G  +E V+LF +M   G+ 
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+   + C +   A++ ++  G+  H    K        V N+LI+ Y++CG MED++ V
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL- 356
           FD +  R+ ++WN+ I GY  NG  + A++ F +M   G   + VT+L +L AC   G  
Sbjct: 256 FDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFE 315

Query: 357 ----VEKGYSYFS---------QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
               V  GYS  S         Q+ +++    K      +V +  + G    A+     +
Sbjct: 316 LVGKVVHGYSMKSGLLWDLESVQSGIDEALGSK------LVFMYVKCGDMGSARRVFDAM 369

Query: 404 PFDPGIGFWKALLGG 418
           P    +  W  ++GG
Sbjct: 370 PSKGNVHVWNLIMGG 384



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 6/151 (3%)

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER--NIVTWNAVICGYAQNGRGEEAIEF 328
           G +   +G  L+  Y KCG +  + +VFD++  R  ++  W +++  YA+ G  +E +  
Sbjct: 126 GIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSL 185

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLL 387
           F +M+  G+ P+   +  +L      G + +G        LE  G+ +    A  ++ L 
Sbjct: 186 FRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVI--HGLLEKLGLGEACAVANALIALY 243

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           SR G  ++A +    +     I  W + + G
Sbjct: 244 SRCGCMEDAMQVFDSMHARDAIS-WNSTISG 273


>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
 gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
          Length = 530

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/506 (34%), Positives = 272/506 (53%), Gaps = 20/506 (3%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSV--SCGSESDKFSSVHQVFDEVPD 70
           +L  L +LH+ A    + T +A+ Q      +R  S+  SC           ++FD  P 
Sbjct: 22  TLAHLKQLHAHA----VVTGRAAAQTTTFHLLRFASLRLSC------LPYARRLFDATPS 71

Query: 71  LNVV-----SATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDL 124
            NV       +         Q H  +++ LF RML      P++F +  V+ ++ A+  +
Sbjct: 72  PNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAI-GV 130

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            L + +H  A K G   + F+ +++LD Y +   + +A ++F+   + NVVS+T ++ G 
Sbjct: 131 QLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGY 190

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
            +  +  DA+ LF+ MP R+V +WNA+I G +Q G   EAV +F  M+ EG  PN +T+ 
Sbjct: 191 ARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVS 250

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
           C + A  ++  L +GK  H  A +        V N LI  Y KCG++ ++  +FD  ++R
Sbjct: 251 CLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDR 310

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
            + TWN++I   A +G  E AI  F  MR  G++P+ VT +GLL AC H G V++G  YF
Sbjct: 311 GLTTWNSLINCLALHGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYF 370

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
                E     + EHY C+VDLL R+GRF++A  F+ D+   P    W +LL  C+IH +
Sbjct: 371 ELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIHRH 430

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM-TRVPGCSWI 483
           +EL E A R +L L+P + +  VML+N  S  G W+ V  +R+ MKE     ++PGCSWI
Sbjct: 431 LELAEHAIRNLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCSWI 490

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVL 509
           E+  K   F +GD  H  +++IY  L
Sbjct: 491 EVDRKTRRFYSGDDGHPESEDIYDTL 516


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 265/458 (57%), Gaps = 11/458 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++P+ NVVS  T+I  F ++   +EA  LF+RM   ++  S  T  + +  +  ++D
Sbjct: 182 LFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV-ISWTTMVAGLSKNGRIDD 240

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             L         K+ ++ NV   + ++  Y +   ++EA ++FE      + S+ TMI G
Sbjct: 241 ARL------LFDKMPVR-NVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITG 293

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHST 242
            ++  + E A+  F +M ++NVV+W A+I G+ Q GR+EEA+ +F EM     V PN  T
Sbjct: 294 FIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGT 353

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD--K 300
               + A + +AAL  G+  H    K + +    V ++LI+ Y+KCG +E +  +FD   
Sbjct: 354 FVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGS 413

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +  R++V+WN +I  YA +G G +AI  F+ M+  G RP+ VT + LL AC+H GLV++G
Sbjct: 414 IGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEG 473

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              F     +    L+ +H+ C+VDL  R+GR +EA +F+  L   P    W ALL GC 
Sbjct: 474 LKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCN 533

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H +++LG+  A ++L  +PE+  +Y++LSN  +  GKW   + +R +MK+KG+ + PGC
Sbjct: 534 VHGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGC 593

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           SWIE+ + VHVFV GD +H   + IY +L     ++++
Sbjct: 594 SWIEVGNTVHVFVVGDNSHREFENIYLLLHDLHTKMKK 631



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 202/436 (46%), Gaps = 83/436 (19%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     QVF+E+PD +VVS T +I  + K    EEA  LF R                  
Sbjct: 81  KIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDR------------------ 122

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
            + A++                   NV   +A++  Y++ + IEEA R+F+     NV+S
Sbjct: 123 -NDAIK-------------------NVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVIS 162

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM----- 231
           + TMI G  ++   + AL LF++MP RNVVSWN +I  + Q  R +EA  LF  M     
Sbjct: 163 WNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV 222

Query: 232 -----LREGLVPN---------HSTLPCAIIAAANIAALGMGKSFHAC-AVKFLGKL--- 273
                +  GL  N            +P   + + N   +G  ++     A K   ++   
Sbjct: 223 ISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPER 282

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           ++   N++I+ + + G +E ++  F K++ +N+VTW AVI G+ Q+GR EEA++ F  M+
Sbjct: 283 ELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQ 342

Query: 334 -INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
             N ++PN  T + +L AC+    + +G   +   S+   ++      +  + ++++ S+
Sbjct: 343 AANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVA----DVVSALINMYSK 398

Query: 390 SGRFKEAKEFLYDLPFDPG-IGF-----WKALLGGC--QIHSNVELGEFAARRILALDPE 441
            G  + A++      FD G IG      W  ++       H +  +  F   + L   P+
Sbjct: 399 CGELELARKI-----FDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPD 453

Query: 442 DVSSYVMLSNALSVAG 457
           +V +Y+ L +A S AG
Sbjct: 454 NV-TYIALLSACSHAG 468



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 168/385 (43%), Gaps = 77/385 (20%)

Query: 80  IGRFAKQHHYEEAIYLFSRMLLL------NIRPSEFTFGSVIPS-STALEDLNLGKQLHA 132
           +G    +H     +  F R   L      +I  S+F+   V+P  S+ + D +       
Sbjct: 9   VGEICGKHKTTTLLSSFGRYAFLLCNLHNSILSSQFSTCQVVPKISSPVRDFSA------ 62

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK------ 186
                   SNV   + ++    K   I EA +VFE+  + +VVS+T +I G +K      
Sbjct: 63  -------NSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEE 115

Query: 187 --------------------------RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                       R E+A +LF  MP +NV+SWN MI GY++ G 
Sbjct: 116 AKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGW 175

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKLDVFVG 278
            ++A++LF +M    +V  ++           I A    +        F  + + DV   
Sbjct: 176 IDQALDLFEKMPERNVVSWNTV----------ITAFMQRRRVDEAQELFNRMPERDVISW 225

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
            ++++  +K G ++D+ L+FDK+  RN+V+WN +I GYAQN R +EA + FE+M    + 
Sbjct: 226 TTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELS 285

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
                + G +      G +E+   +F   K+ +  ++    +  ++    + GR +EA +
Sbjct: 286 SWNTMITGFI----QNGKLERAVDFFY--KMSNKNVVT---WTAVISGHVQDGRSEEALK 336

Query: 399 FLYDLP----FDPGIGFWKALLGGC 419
              ++       P  G + ++LG C
Sbjct: 337 IFSEMQAANNVKPNEGTFVSVLGAC 361



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 95/188 (50%), Gaps = 7/188 (3%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFG 112
           ++ K       F ++ + NVV+ T +I    +    EEA+ +FS M    N++P+E TF 
Sbjct: 296 QNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFV 355

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-- 170
           SV+ + + L  L  G+Q+H   +K   Q    V SA++++Y K   +E A ++F+D    
Sbjct: 356 SVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIG 415

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVN 226
           + +VVS+  MI           A+ LF EM       + V++ A++   S  G  +E + 
Sbjct: 416 HRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLK 475

Query: 227 LFIEMLRE 234
           LF  ++R+
Sbjct: 476 LFENLVRD 483



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
           F    +V   N LI+   K G + ++  VF+++ +R++V+W AVI GY + G  EEA   
Sbjct: 60  FSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTL 119

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS 388
           F+R   N    N VT   L+        +E+    F    +++        +  M++  +
Sbjct: 120 FDR---NDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKN-----VISWNTMIEGYA 171

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYV 447
           R G   +A +    +P +  +  W  ++        V+     A+ +    PE DV S+ 
Sbjct: 172 RKGWIDQALDLFEKMP-ERNVVSWNTVITAFMQRRRVD----EAQELFNRMPERDVISWT 226

Query: 448 MLSNALSVAGKWDN 461
            +   LS  G+ D+
Sbjct: 227 TMVAGLSKNGRIDD 240


>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
 gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
          Length = 528

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/465 (35%), Positives = 265/465 (56%), Gaps = 22/465 (4%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           HQ+F+ +   N+   T II  F+ Q H      LF  ML  NIRP+ F +  V+ S   +
Sbjct: 59  HQIFNHIHSPNIYLFTAIITAFSSQQH--TTFKLFKTMLNSNIRPNNFIYPHVLKS---V 113

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK-LSSIEEATRVFEDTHNPNVVSYTTM 180
           ++  L   +HA   K G  +   V ++++D Y K L  + +A +VF++    N+V +T +
Sbjct: 114 KERFLVDLVHAQIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFTVL 173

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR------- 233
           + G L+    E  L +F EM  R+V +WNA+I G +Q G   E + LF EM+        
Sbjct: 174 VSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEG 233

Query: 234 ---EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
              +G  PN  T+ C + A  +   L +GK  H    +    +D FV N+L+  Y KCGS
Sbjct: 234 GFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRHGFVVDSFVSNALVDMYGKCGS 293

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI--NGIRPNGVTLLGLL 348
           +E +  VF+    + + +WN++I  YA +G+ E+AI FFE+M     G+RP+ VT +GLL
Sbjct: 294 LELARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLL 353

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            AC H GLVE+G  YF +  +++ G ++P+  HY C++DLL R+G+F EA + +  +  +
Sbjct: 354 NACTHGGLVEQGCGYF-EMMIKEYG-IEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSME 411

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W +LL GC++H   +L EFAA++++ +DP +     ML+N     GKWD + N+ 
Sbjct: 412 PDEVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDPHNGGYGTMLANIYGQLGKWDEMRNVW 471

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
            ++K++   ++PGCSWIE+  KVH F + D+++   +E+Y +L S
Sbjct: 472 SKLKQQKSYKIPGCSWIEVDDKVHQFFSLDQSNPKTEELYNILES 516


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 259/466 (55%), Gaps = 32/466 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S    + S +Q+F  +   NVVS T +I  + +   +++   L   M+L  IRP  F   
Sbjct: 564 SNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVT 623

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S + +    E L  GK +H +  + G++  + V +A++++Y+K  ++EEA  +F+   N 
Sbjct: 624 SALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTN- 682

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                         ++V+SWN +IGGYS+     E+ +LF +ML
Sbjct: 683 ------------------------------KDVISWNTLIGGYSRNNFPNESFSLFSDML 712

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            +   PN  T+ C + AAA+I++L  G+  HA A++     D +  N+L+  Y KCG++ 
Sbjct: 713 LQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALL 771

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            + ++FD+LT++N+++W  +I GY  +G G+ AI  FE+MR +GI P+  +   +L+AC 
Sbjct: 772 VARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACC 831

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+GL  +G  +F   + E     K +HY C+VDLLSR+G  KEA EF+  +P +P    W
Sbjct: 832 HSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIW 891

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LL GC+IH NV+L E  A ++  L+PE+   YV+L+N  + A +W+ V  ++ ++  +
Sbjct: 892 VSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGR 951

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G+    G SWIE++SKVHVF+  +RNH   + I   L     ++R+
Sbjct: 952 GLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQ 997



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 165/367 (44%), Gaps = 45/367 (12%)

Query: 11  SLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD 70
           S  L  +S L SL    +I      +   +  A+    ++  S   +     +VFD +  
Sbjct: 208 SCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHP 267

Query: 71  LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            + +S  ++IG       +  A+ LFS+M       S  T  SV+P+   L    +GK +
Sbjct: 268 RDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAV 327

Query: 131 HAWATKVGL-------QSNV---FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           H ++ K GL       QS +    +GS ++ +Y+K   +  A RVF+   +         
Sbjct: 328 HGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKG------- 380

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                                  NV  WN ++GGY++ G  EE+++LF++M   G+ P+ 
Sbjct: 381 -----------------------NVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDE 417

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
             + C +     ++    G   H   VK        V N+LISFYAK   + D++LVF++
Sbjct: 418 HAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNR 477

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT-----G 355
           +  ++ ++WN+VI G + NG   EAIE F RM   G   + VTLL +L AC  +     G
Sbjct: 478 MPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAG 537

Query: 356 LVEKGYS 362
            V  GYS
Sbjct: 538 RVVHGYS 544



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 160/371 (43%), Gaps = 38/371 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           V CG      +S  +VFD +    NV     I+G +AK   +EE++ LF +M  L I P 
Sbjct: 361 VKCGD----MASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPD 416

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           E     ++   T L     G   H +  K+G  +   V +A++  Y K            
Sbjct: 417 EHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAK------------ 464

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                     + MI          DA+ +F  MP ++ +SWN++I G S  G N EA+ L
Sbjct: 465 ----------SNMI---------GDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIEL 505

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           FI M  +G   +  TL   + A A       G+  H  +VK     +  + N+L+  Y+ 
Sbjct: 506 FIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSN 565

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C   + +  +F  + ++N+V+W A+I  Y + G  ++     + M ++GIRP+   +   
Sbjct: 566 CSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSA 625

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L A      +++G S            L P   A M ++  +    +EA+  ++D   + 
Sbjct: 626 LHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALM-EMYVKCRNVEEAR-LIFDRVTNK 683

Query: 408 GIGFWKALLGG 418
            +  W  L+GG
Sbjct: 684 DVISWNTLIGG 694



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 142/316 (44%), Gaps = 49/316 (15%)

Query: 64  VFDEVPD--LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           VFD +P    +V   T+++  +AK   ++EA+ LF +M    + P       V+   ++L
Sbjct: 158 VFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSL 217

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  G+ +H    K+GL     V +A++ +Y +   +E+A RVF+  H  + +S+ +M 
Sbjct: 218 GSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSM- 276

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                                         IGG    G +  AV+LF +M  +G   +  
Sbjct: 277 ------------------------------IGGCFSNGWHGTAVDLFSKMWSQGTEISSV 306

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKF----------LGKLDVFVGNSLISFYAKCGSM 291
           T+   + A A +    +GK+ H  +VK            G  D  +G+ L+  Y KCG M
Sbjct: 307 TVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDM 366

Query: 292 EDSLLVFDKLTER-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL-- 348
             +  VFD ++ + N+  WN ++ GYA+ G  EE++  F +M   GI P+   +  LL  
Sbjct: 367 ASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKC 426

Query: 349 ---WACNHTGLVEKGY 361
               +C   GLV  GY
Sbjct: 427 ITCLSCARDGLVAHGY 442



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 26/267 (9%)

Query: 180 MICGLLKRERFEDALKLFQEMPHR--NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           ++   LK     +A  +F  MP +  +V  W +++  Y++ G  +EAV+LF +M   G+ 
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+   + C +   +++ +L  G+  H    K        V N+LI+ Y++CG MED+  V
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARV 261

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT--G 355
           FD +  R+ ++WN++I G   NG    A++ F +M   G   + VT+L +L AC     G
Sbjct: 262 FDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYG 321

Query: 356 LVEK---GYSYFS---------QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           L+ K   GYS  S         Q+ ++D  +        +V +  + G    A+     +
Sbjct: 322 LIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSK-----LVFMYVKCGDMASARRVFDAM 376

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEF 430
                +  W  ++GG       ++GEF
Sbjct: 377 SSKGNVHVWNLIMGG-----YAKVGEF 398



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 20/177 (11%)

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER- 304
           A+I A++ AA G             GK  V +G  L+  Y KCG + ++  VFD +  + 
Sbjct: 121 ALIRASSAAATG-------------GKGSV-LGKRLVLAYLKCGDLGEARTVFDGMPPQA 166

Query: 305 -NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            ++  W +++  YA+ G  +EA+  F +M+  G+ P+   +  +L   +  G + +G   
Sbjct: 167 ADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVI 226

Query: 364 FSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
                LE  G+ +    A  ++ + SR GR ++A      +     I  W +++GGC
Sbjct: 227 --HGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAIS-WNSMIGGC 280


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 170/475 (35%), Positives = 260/475 (54%), Gaps = 45/475 (9%)

Query: 50  SCGSESDKFSSVHQVFDEVPDL--NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRP 106
           SCG+      +   VFD +P L  +VVS  ++I  + + H YE A+ +F  +L   ++ P
Sbjct: 174 SCGA----VEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSP 229

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
            E T  S +     L  L+LGK++H   T  G   +VFVGS+++D+Y K           
Sbjct: 230 DEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSK----------- 278

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                          CG     + EDA K+F  +PHRN V W +MI GY+Q+   +EA+ 
Sbjct: 279 ---------------CG-----QIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIE 318

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF EM   G   + +T+ C + A  +  AL  G+  H    +   ++D+   N+LI  Y+
Sbjct: 319 LFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYS 378

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-INGIRPNGVTLL 345
           KCG ++ +L +F  LT+ +I +W+AVI G A NG  ++A+  F +M  I+ IRPN +T L
Sbjct: 379 KCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFL 438

Query: 346 GLLWACNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           G+L ACNH G V+KG  YF   +Q     PG+   EHY CMVDLL R+    EA++F+  
Sbjct: 439 GVLCACNHGGFVDKGLYYFNAMTQIYNLTPGI---EHYGCMVDLLGRANLLVEAEKFIRT 495

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           LP  P +  W++LL  C+ H N+EL EFAA++I  L+P    + V+LSN  + A +W +V
Sbjct: 496 LPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDV 555

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
             +R++M  + + + PGCS++EI   VH     DR+H     IY  + S  + ++
Sbjct: 556 KRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMISINKALQ 610



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 148/287 (51%), Gaps = 25/287 (8%)

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           A+ VF D     VVS   +   L     F  +  LF ++   NV SWN M   YS++   
Sbjct: 53  ASGVFRDP----VVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFP 108

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
            E + L+  MLR G +P++ + P  + A A ++ L  G+  H+  +K    LDVFV N+L
Sbjct: 109 AETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNAL 168

Query: 282 ISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIE-FFERMRINGIR 338
           IS ++ CG++E +  VFD L    R++V+WN++I GY Q+ R E A++ F+E +    + 
Sbjct: 169 ISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLS 228

Query: 339 PNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
           P+ VTL+  L  C   GL++ G   +  F+ +      +L     + ++D+ S+ G+ ++
Sbjct: 229 PDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGF----VLDVFVGSSLIDMYSKCGQIED 284

Query: 396 AKEFLYDLPFDPGIGFWKALLGG----------CQIHSNVELGEFAA 432
           A++    +P    +  W +++ G           ++   +++G FAA
Sbjct: 285 ARKVFDRIPHRNTVC-WTSMIAGYAQSDLFKEAIELFREMQIGGFAA 330


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 171/509 (33%), Positives = 266/509 (52%), Gaps = 38/509 (7%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           LN  S   +L    LI +  +         I    +S  +         ++F  +P  ++
Sbjct: 337 LNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDL 396

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG---SVIPSSTALEDLNLGKQL 130
           +S   II  +A++    EA+ L+ +M    ++P   TF    S   +S+A  D   GK +
Sbjct: 397 ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYAD---GKMI 453

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           H    + G++SN  + +A++++Y +  S+ EA  VFE T                     
Sbjct: 454 HEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQA------------------- 494

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
                       R+V+SWN+MI G++Q G  E A  LF EM  E L P++ T    +   
Sbjct: 495 ------------RDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGC 542

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
            N  AL +GK  H    +   +LDV +GN+LI+ Y +CGS++D+  VF  L  R++++W 
Sbjct: 543 KNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWT 602

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           A+I G A  G   +AIE F +M+  G RP +G T   +L ACNH GLV +GY  FS  + 
Sbjct: 603 AMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMES 662

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
           E   +   EHY C+V LL R+ RF+EA+  +  +PF P    W+ LLG C+IH N+ L E
Sbjct: 663 EYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAE 722

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
            AA   L L+  + + Y++LSN  + AG+WD+V+ IRR M+ +G+ + PG SWIE+ + +
Sbjct: 723 HAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNII 782

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           H F+  DR+H    EIYA L+  + ++ E
Sbjct: 783 HEFIAADRSHPETAEIYAELKRLSVEMEE 811



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 117/457 (25%), Positives = 214/457 (46%), Gaps = 56/457 (12%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I +L  C S   L    K+HS       +  KA  Q+   P ++   +S   +       
Sbjct: 132 ISILTACYSPAELENGKKIHS-------QIIKAGYQR--DPRVQNSLLSMYGKCGDLPRA 182

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            QVF  +   +VVS  T++G +A++ + +E + LF +M    I P + T+ +++ + T  
Sbjct: 183 RQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTP 242

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L+ GK++H    + GL S++ VG+A++ + ++   ++ A + F+              
Sbjct: 243 SMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFK-------------- 288

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G+  R+                VV +NA+I   +Q G N EA   +  M  +G+  N +
Sbjct: 289 -GIADRD----------------VVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRT 331

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A +   AL  GK  H+   +     DV +GN+LIS YA+CG +  +  +F  +
Sbjct: 332 TYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM 391

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +R++++WNA+I GYA+     EA+  +++M+  G++P  VT L LL AC ++       
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS------- 444

Query: 362 SYFSQAKL--ED---PGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           S ++  K+  ED    G+    H A  ++++  R G   EA+           I  W ++
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSM 503

Query: 416 LGGCQIHSNVELGE--FAARRILALDPEDVSSYVMLS 450
           + G   H + E     F   +   L+P++++   +LS
Sbjct: 504 IAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 172/370 (46%), Gaps = 37/370 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V C S  D     HQVF E+P  +V+S  ++I  +A+Q   ++A  LF  M      P++
Sbjct: 73  VKCRSVLD----AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNK 128

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T+ S++ +  +  +L  GK++H+   K G Q +  V +++L +Y K   +  A +VF  
Sbjct: 129 ITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG 188

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               +VVSY T                               M+G Y+Q    +E + LF
Sbjct: 189 ISPRDVVSYNT-------------------------------MLGLYAQKAYVKECLGLF 217

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M  EG+ P+  T    + A    + L  GK  H   V+     D+ VG +L++   +C
Sbjct: 218 GQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRC 277

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G ++ +   F  + +R++V +NA+I   AQ+G   EA E + RMR +G+  N  T L +L
Sbjct: 278 GDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSIL 337

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+ +  +E G    S    ED      +    ++ + +R G   +A+E  Y +P    
Sbjct: 338 NACSTSKALEAGKLIHSHIS-EDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDL 396

Query: 409 IGFWKALLGG 418
           I  W A++ G
Sbjct: 397 IS-WNAIIAG 405



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 131/259 (50%), Gaps = 34/259 (13%)

Query: 105 RPSEF---TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
           RP+E    T+ +++ + T    L   K++HA   + G+  ++F+ + ++++Y+K  S+  
Sbjct: 21  RPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVL- 79

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
                                         DA ++F+EMP R+V+SWN++I  Y+Q G  
Sbjct: 80  ------------------------------DAHQVFKEMPRRDVISWNSLISCYAQQGFK 109

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           ++A  LF EM   G +PN  T    + A  + A L  GK  H+  +K   + D  V NSL
Sbjct: 110 KKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSL 169

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           +S Y KCG +  +  VF  ++ R++V++N ++  YAQ    +E +  F +M   GI P+ 
Sbjct: 170 LSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDK 229

Query: 342 VTLLGLLWACNHTGLVEKG 360
           VT + LL A     ++++G
Sbjct: 230 VTYINLLDAFTTPSMLDEG 248



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 7/220 (3%)

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
            K  HA  V+     D+F+ N LI+ Y KC S+ D+  VF ++  R++++WN++I  YAQ
Sbjct: 46  AKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQ 105

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
            G  ++A + FE M+  G  PN +T + +L AC     +E G    SQ  ++      P 
Sbjct: 106 QGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQI-IKAGYQRDPR 164

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVE--LGEFAARRI 435
               ++ +  + G    A++    + P D  +  +  +LG     + V+  LG F     
Sbjct: 165 VQNSLLSMYGKCGDLPRARQVFAGISPRD--VVSYNTMLGLYAQKAYVKECLGLFGQMSS 222

Query: 436 LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
             + P+ V +Y+ L +A +     D    I +   E+G+ 
Sbjct: 223 EGISPDKV-TYINLLDAFTTPSMLDEGKRIHKLTVEEGLN 261


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 249/475 (52%), Gaps = 43/475 (9%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLN--VVSATTIIGRFAKQHHYEEAIYLFSRM 99
           P ++T  +S   +     +  +VF+E        V    ++  +       EA+ LF +M
Sbjct: 84  PFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQM 143

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
               +  +  T   +IP+  +  +L LG  LH    K G  S+V V +  + +Y+K  S+
Sbjct: 144 NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSV 203

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
             A                                KLF EMP + ++SWNAM+ GY+Q G
Sbjct: 204 NYAQ-------------------------------KLFDEMPVKGLISWNAMVSGYAQNG 232

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS--FHACAVKFLGKLDVFV 277
                + L+  M   G+ P+  TL   + + AN+ A  +G    F   A  F    + F+
Sbjct: 233 LATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTS--NPFL 290

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N+LI+ YA+CG++  +  VFD + ER +V+W A+I GY  +G GE A++ F+ M  +GI
Sbjct: 291 NNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGI 350

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFK 394
            P+G   + +L AC+H GL ++G  YF   K     +PG   PEHY+CMVDLL R+GR K
Sbjct: 351 EPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG---PEHYSCMVDLLGRAGRLK 407

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           EA+  +  +P  P    W ALLG C+IH NVEL E A  R++ L+PE++  YV+LSN  S
Sbjct: 408 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYS 467

Query: 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            A     V  IR  MKEK + + PGCS++E+K +VH F+ GDRNH  +DEIY VL
Sbjct: 468 NANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVL 522



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 12/217 (5%)

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           WN  +   ++  +  +A++L+ +MLR G  PN  T P A+ + A ++   +G  FH    
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEA 325
           K     + FV   LIS Y K   ++++  VF++   + +  V +NA++ GY  N +  EA
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS-YFSQAKL---EDPGMLKPEHYA 381
           +  F +M   G+  N VTLLGL+ AC     +E G S + S  K     D  ++      
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVN----- 191

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           C + +  + G    A++   ++P   G+  W A++ G
Sbjct: 192 CFITMYMKCGSVNYAQKLFDEMPVK-GLISWNAMVSG 227



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 56/288 (19%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ L+  C S ++L   S LH     Y  ++  + V    T  ++     CGS     + 
Sbjct: 155 LLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMK-----CGS----VNY 205

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             ++FDE+P   ++S   ++  +A+       + L+  M +  + P   T   V+ S   
Sbjct: 206 AQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCAN 265

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L   ++G ++       G  SN F+ +A++++Y +  ++ +A  VF+      +VS+T +
Sbjct: 266 LGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAI 325

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I                               GGY   G  E AV LF EM+R G+ P+ 
Sbjct: 326 I-------------------------------GGYGMHGHGEIAVQLFKEMIRSGIEPDG 354

Query: 241 STLPCAIIAAANIA----------------ALGMGKSFHACAVKFLGK 272
           +   C + A ++                   L  G   ++C V  LG+
Sbjct: 355 TAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGR 402


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 258/458 (56%), Gaps = 10/458 (2%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           HQ  D  PDL + +A   I   +     ++A  L+ ++L   I P+EFTF S++ S +  
Sbjct: 88  HQTID--PDLFLFTAA--INTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTK 143

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
                GK +H    K GL  + +V + ++D+Y K   +  A +VF+     ++VS T MI
Sbjct: 144 S----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMI 199

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNH 240
               K+   E A  LF  M  R++VSWN MI GY+Q G   +A+ LF ++L EG   P+ 
Sbjct: 200 TCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDE 259

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+  A+ A + I AL  G+  H        +L+V V   LI  Y+KCGS+E+++LVF+ 
Sbjct: 260 ITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFND 319

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-INGIRPNGVTLLGLLWACNHTGLVEK 359
              ++IV WNA+I GYA +G  ++A+  F  M+ I G++P  +T +G L AC H GLV +
Sbjct: 320 TPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNE 379

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G   F     E     K EHY C+V LL R+G+ K A E + ++  D     W ++LG C
Sbjct: 380 GIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSC 439

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H +  LG+  A  ++ L+ ++   YV+LSN  +  G ++ V+ +R  MKEKG+ + PG
Sbjct: 440 KLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPG 499

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            S IEI++KVH F  GDR H  + EIY +LR  +E+I+
Sbjct: 500 ISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIK 537



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 7/209 (3%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NI 104
           T  ++C ++     +   +FD + + ++VS   +I  +A+     +A+ LF ++L     
Sbjct: 196 TAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKP 255

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           +P E T  + + + + +  L  G+ +H +     ++ NV V + ++D+Y K  S+EEA  
Sbjct: 256 KPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVL 315

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP-----HRNVVSWNAMIGGYSQTG 219
           VF DT   ++V++  MI G       +DAL+LF EM          +++   +   +  G
Sbjct: 316 VFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAG 375

Query: 220 RNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
              E + +F  M +E G+ P      C +
Sbjct: 376 LVNEGIRIFESMGQEYGIKPKIEHYGCLV 404


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 278/485 (57%), Gaps = 49/485 (10%)

Query: 53  SESDKFSSVHQVFD----EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           ++S  F +  ++F+    E   L+V++ + +I  +A++   +EA+  F +M+L    P+ 
Sbjct: 336 TQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNS 395

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS------------NVFVGSAILDLYIKL 156
            T  S++ +  +L  L+ G ++HA++ K  L S            ++ V +A++D+Y K 
Sbjct: 396 VTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKC 455

Query: 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216
            S + A  +F+                + +RER              NVV+W  MIGGY+
Sbjct: 456 RSFKAARSIFD---------------SIPRRER--------------NVVTWTVMIGGYA 486

Query: 217 QTGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGK 272
           Q G + +A+ +F EM+ +   + PN  T+ C ++A A++AAL MGK  HA   +      
Sbjct: 487 QYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEP 546

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
              FV N LI  Y+KCG ++ +  VFD + +RN V+W +++ GY  +GRG+EA++ F++M
Sbjct: 547 SVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKM 606

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
           +  G  P+ ++ L LL+AC+H+G+V++G +YF   + +   +   EHYAC++DLL+R GR
Sbjct: 607 QKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGR 666

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
             +A + + ++P +P    W ALL  C++HSNVEL E+A  +++ +  E+  SY ++SN 
Sbjct: 667 LDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNI 726

Query: 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
            + A +W +V+ IR+ MK+ G+ + PGCSW++ K     F  GDR+H ++ EIY++L   
Sbjct: 727 YANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERL 786

Query: 513 TEQIR 517
             +I+
Sbjct: 787 IGRIK 791



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 216/433 (49%), Gaps = 41/433 (9%)

Query: 51  CGSESDKFSSVHQVFDEVPDL---NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL----- 102
           CGS  D       VFDE+      +V+S  +I+    K  +   A+ LFS M ++     
Sbjct: 197 CGSLED----ASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKA 252

Query: 103 -NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
            N R    +  +++P+  +L+ L   K++H++A + G  ++ FV +A++D Y K  S+ +
Sbjct: 253 TNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMND 312

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN----VVSWNAMIGGYSQ 217
           A +VF      +VVS+  M+ G  +   F  A +LF+ M   N    V++W+A+I GY+Q
Sbjct: 313 AVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQ 372

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK--------- 268
            G ++EA++ F +M+ +G  PN  T+   + A A++ AL  G   HA ++K         
Sbjct: 373 RGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDND 432

Query: 269 ---FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGE 323
                   D+ V N+LI  Y+KC S + +  +FD +   ERN+VTW  +I GYAQ G   
Sbjct: 433 FGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSN 492

Query: 324 EAIEFFERM--RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPE 378
           +A++ F  M  +   + PN  T+  +L AC H   +  G   ++Y ++    +P +    
Sbjct: 493 DALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVA 552

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRIL 436
           +  C++D+ S+ G    A+     +P    +  W +++ G  +H   +  L  F   +  
Sbjct: 553 N--CLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGYGMHGRGKEALDIFDKMQKA 609

Query: 437 ALDPEDVSSYVML 449
              P+D+S  V+L
Sbjct: 610 GFVPDDISFLVLL 622



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 188/420 (44%), Gaps = 79/420 (18%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           ++CG+  D  S    V + V     V    ++    K+ H + AI +  RML    +P  
Sbjct: 94  LACGATKDALS----VLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDH 149

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT    + +   L     G+ LH      G +SNVFV +A++ +Y +  S+E+A+ VF++
Sbjct: 150 FTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDE 209

Query: 169 THNP---NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
                  +V+S+ +++   +K      AL+LF EM         +MI        +E+A 
Sbjct: 210 ITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEM---------SMI-------VHEKAT 253

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           N      R  ++   + LP    A A++ AL   K  H+ A++     D FV N+LI  Y
Sbjct: 254 N-----ERSDIISIVNILP----ACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTY 304

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWN----------------------------------- 310
           AKCGSM D++ VF+ +  +++V+WN                                   
Sbjct: 305 AKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWS 364

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQA 367
           AVI GYAQ G  +EA++ F++M ++G  PN VT++ LL AC   G + +G   ++Y  + 
Sbjct: 365 AVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKK 424

Query: 368 KLEDPGMLKPEH--------YACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALLGG 418
            L                  Y  ++D+ S+   FK A+     +P  +  +  W  ++GG
Sbjct: 425 CLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGG 484



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 101/189 (53%), Gaps = 20/189 (10%)

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V SY  + CG  K     DAL + + +     V WN ++  + + G  + A+ +   MLR
Sbjct: 90  VASY--LACGATK-----DALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLR 142

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHA--CAVKFLGKLDVFVGNSLISFYAKCGSM 291
            G  P+H TLP A+ A   + +   G++ H   C   F  + +VFV N+L++ Y++CGS+
Sbjct: 143 AGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGF--ESNVFVCNALVAMYSRCGSL 200

Query: 292 EDSLLVFDKLTER---NIVTWNAVICGYAQNGRGEEAIEFFERM------RINGIRPNGV 342
           ED+ LVFD++T +   ++++WN+++  + +      A+E F  M      +    R + +
Sbjct: 201 EDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDII 260

Query: 343 TLLGLLWAC 351
           +++ +L AC
Sbjct: 261 SIVNILPAC 269



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%)

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           +G  +++ Y  CG+ +D+L V +++T    V WN ++  + + G  + AI    RM   G
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 337 IRPNGVTLLGLLWAC 351
            +P+  TL   L AC
Sbjct: 145 TKPDHFTLPYALKAC 159


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 172/520 (33%), Positives = 281/520 (54%), Gaps = 46/520 (8%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ +L  C  + +L    ++H+ A     + Q        + AI      CG+      S
Sbjct: 330 LVSVLPACADAQALGACREVHAFAVRGGFDEQVNV-----STAILDVYCKCGA----VDS 380

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             +VFD + D N VS   +I  +A+     EA+ LF RM+   +  ++ +  + + +   
Sbjct: 381 ARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGE 440

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L  L+ G+++H    ++GL+SNV V +A++ +Y K    + A +VF+             
Sbjct: 441 LGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFD------------- 487

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                             E+ ++  VSWNAMI G +Q G +E+AV LF  M  E + P+ 
Sbjct: 488 ------------------ELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDS 529

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL   I A A+I+     +  H  +++     DV+V  +LI  YAKCG +  +  +F+ 
Sbjct: 530 FTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNS 589

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
             +R+++TWNA+I GY  +G G+ A+E FE M+ +G  PN  T L +L AC+H GLV++G
Sbjct: 590 ARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEG 649

Query: 361 YSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
             YFS  K +   +PGM   EHY  MVDLL R+G+  EA  F+  +P +PGI  + A+LG
Sbjct: 650 QEYFSSMKEDYGLEPGM---EHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLG 706

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H NVEL E +A+RI  L+PE+   +V+L+N  + A  W +V+ +R  M++KG+ + 
Sbjct: 707 ACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKT 766

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           PG S +++K+++H F +G  NH    +IYA L    E+I+
Sbjct: 767 PGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIK 806



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 32/256 (12%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P   TF S++    A  DL  G+ +HA     GL       +A+ ++Y K          
Sbjct: 223 PVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKC--------- 273

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
                                  R  DA ++F  MP R+ V+WNA++ GY++ G  E AV
Sbjct: 274 ----------------------RRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAV 311

Query: 226 NLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
            + + M  E G  P+  TL   + A A+  ALG  +  HA AV+      V V  +++  
Sbjct: 312 GMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDV 371

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y KCG+++ +  VFD + +RN V+WNA+I GYA+NG   EA+  F+RM   G+    V++
Sbjct: 372 YCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSV 431

Query: 345 LGLLWACNHTGLVEKG 360
           L  L AC   G +++G
Sbjct: 432 LAALHACGELGFLDEG 447


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 172/532 (32%), Positives = 278/532 (52%), Gaps = 74/532 (13%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSS 118
           S  +VFD++ + NVV+ T +I R A+  + +EAI LF  ML+ +   P  FT   +I   
Sbjct: 213 SARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVC 272

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             ++ L+LGK+LH+W  + GL  ++ VG +++D+Y K   ++EA +VF+     NV+S+T
Sbjct: 273 AEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWT 332

Query: 179 TMICGLLK------RE-------------------RFEDALKL--------FQEMPHRNV 205
            ++ G ++      RE                    F   LK         F E  H   
Sbjct: 333 ALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQT 392

Query: 206 VSW---------NAMIGGYSQTGRNEEAVNLFIEMLREGLVP------------------ 238
           +           N ++  Y+++GR E A   F  +  + LV                   
Sbjct: 393 IKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQ 452

Query: 239 -------------NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
                        +  T    +  AA I  +G G+  HA  VK   + D+ V N+LIS Y
Sbjct: 453 DLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMY 512

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           +KCG+ E +L VF+ + + N++TW ++I G+A++G   +A+E F  M   G++PN VT +
Sbjct: 513 SKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYI 572

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            +L AC+H GL+++ + +F+  +     + + EHYACMVDLL RSG   EA EF+  +PF
Sbjct: 573 AVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPF 632

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
           D     W+  LG C++H N +LGE AA+ IL  +P D ++Y++LSN  +  G+W++V+ I
Sbjct: 633 DADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAI 692

Query: 466 RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           R+ MK+K +T+  G SWIE++++VH F  GD  H    +IY  L     +I+
Sbjct: 693 RKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIK 744



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 149/286 (52%), Gaps = 34/286 (11%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQL 130
           +VVS ++II  FA   +  +A+ +F ++LL + + P+E+ F +VI +         G  L
Sbjct: 119 DVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCL 178

Query: 131 HAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
             +  K G   S+V VG  ++D+++K  S+ +                            
Sbjct: 179 FGFVLKTGYFDSHVCVGCELIDMFVKGCSLAD---------------------------- 210

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCAII 248
            E A K+F +M  +NVV+W  MI   +Q G N+EA++LF+EML   G VP+  TL   I 
Sbjct: 211 LESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLIS 270

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
             A I  L +GK  H+  ++    LD+ VG SL+  YAKCG ++++  VFD + E N+++
Sbjct: 271 VCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMS 330

Query: 309 WNAVICGYAQNGRG--EEAIEFFERMRIN-GIRPNGVTLLGLLWAC 351
           W A++ GY + G G   EA+  F  M +  G+ PN  T  G+L AC
Sbjct: 331 WTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKAC 376



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 151/347 (43%), Gaps = 48/347 (13%)

Query: 87  HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL-------EDLNLGKQLHAWATKVGL 139
           +H+     L   +  LN+  +E T  + + +S+ L       ++ +LGK LH   T   L
Sbjct: 24  NHFNNPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNL 83

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
             +  + ++++ LY K +    A  +F+   N                            
Sbjct: 84  PLDTLLLNSLITLYSKSNDPITAFSIFQSMENSK-------------------------- 117

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCAIIAAANIAALGM 258
              R+VVS++++I  ++      +AV +F ++L ++G+ PN       I A         
Sbjct: 118 ---RDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKT 174

Query: 259 GKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMED---SLLVFDKLTERNIVTWNAVI 313
           G       +K  G  D  V VG  LI  + K  S+ D   +  VFDK+ E+N+VTW  +I
Sbjct: 175 GLCLFGFVLK-TGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMI 233

Query: 314 CGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
              AQ G  +EAI+ F  M + +G  P+  TL GL+  C     +  G    S   +   
Sbjct: 234 TRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSW--VIRS 291

Query: 373 GMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           G++      C +VD+ ++ G  +EA++ ++D   +  +  W AL+ G
Sbjct: 292 GLVLDLCVGCSLVDMYAKCGLVQEARK-VFDGMREHNVMSWTALVNG 337



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VS  ++S +  S  + FD + + N+VS T +     K  +      L   +  +    S 
Sbjct: 408 VSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSS 467

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT+ S++  +  +  +  G+Q+HA   K+G ++++ V +A++ +Y K  + E A +VF D
Sbjct: 468 FTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFND 527

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEA 224
             + NV+++T++I G  K      AL+LF  M    V    V++ A++   S  G  +EA
Sbjct: 528 MEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEA 587

Query: 225 VNLFIEML-REGLVPNHSTLPCAI 247
              F  M    G+VP      C +
Sbjct: 588 WKHFTSMRDNHGIVPRMEHYACMV 611


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 268/464 (57%), Gaps = 4/464 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +SCG    + S  + VF++    ++V+  ++I    K+    EAI ++  M    +RP+E
Sbjct: 204 LSCG----ELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNE 259

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T   +I S + ++DLNLGK+ H +  + GL+  + + +A++D+Y+K   +  A  +F++
Sbjct: 260 ITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDN 319

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                +VS+TTM+ G  +    + A ++  ++P ++VV WNA+I G  Q  + +EA+ LF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            EM    + P+  T+   + A + + AL +G   H    +    +DV +G +L+  YAKC
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G++  +L VF+++ +RN +TW AVICG A +G  ++A+ +F +M   GI P+ +T LG+L
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC H GLVE+G  YFS+   +     K +HY+CMVDLL R+G  +EA+E + ++P    
Sbjct: 500 SACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAAD 559

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
                AL   C+++ NV++GE  A ++L +DP+D  +YV+L++  S A  W    + R+ 
Sbjct: 560 AAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKL 619

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
           M +KG+ + PGCS +EI   VH FV    +       Y ++ SC
Sbjct: 620 MNDKGVEKTPGCSLVEINGIVHEFVLPPYDGQFFYPTYGLVLSC 663



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 205/482 (42%), Gaps = 77/482 (15%)

Query: 9   RSSLSLNKLSKLHSLAPNYLIETQKASVQKLET--PAIRTDSVSCGSESDKFSSVHQVFD 66
           R +  L+ L +  SL     I+ Q  S   +E    A R  +    SES +     ++  
Sbjct: 56  RENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILY 115

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTALEDLN 125
            + +LNV S    I  + +    E    L+ RMLL   ++P   T+  ++          
Sbjct: 116 RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSC 175

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           LG  +     K G + ++FV                        HN ++    +  CG L
Sbjct: 176 LGLGVLGHVLKFGFECDIFV------------------------HNASITMLLS--CGEL 209

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                  A  +F +   R++V+WN+MI G  + G   EA+ ++ EM  E + PN  T+  
Sbjct: 210 SV-----AYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIG 264

Query: 246 AIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFD----- 299
            I + + +  L +GK FH C +K  G +  + + N+L+  Y KCG +  + ++FD     
Sbjct: 265 MISSCSQVQDLNLGKEFH-CYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQK 323

Query: 300 --------------------------KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
                                     K+ E+++V WNA+I G  Q  +G+EA+  F  M+
Sbjct: 324 TLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ 383

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
           I  I P+ VT++  L AC+  G ++ G   + Y  + KL     L       +VD+ ++ 
Sbjct: 384 IRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALG----TALVDMYAKC 439

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVM 448
           G    A +   ++P    +  W A++ G  +H N +  L  F+    + + P++++   +
Sbjct: 440 GNIARALQVFEEIPQRNCLT-WTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGV 498

Query: 449 LS 450
           LS
Sbjct: 499 LS 500



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 141/314 (44%), Gaps = 39/314 (12%)

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNH 240
           C L + +  +   ++   +   NV SWNA I GY ++G  E    L+  ML  G L P++
Sbjct: 99  CALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDN 158

Query: 241 STLPCAIIAAAN--IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
            T P  +        + LG+G   H   +KF  + D+FV N+ I+    CG +  +  VF
Sbjct: 159 HTYPLLLKGCCGQYSSCLGLGVLGHV--LKFGFECDIFVHNASITMLLSCGELSVAYDVF 216

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           +K   R++VTWN++I G  + G   EAI+ ++ M    +RPN +T++G++ +C+    + 
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLN 276

Query: 359 KG---YSYFSQAKLED----PGMLKPEHYAC-----------------------MVDLLS 388
            G   + Y  +  LE        L   +  C                       MV   +
Sbjct: 277 LGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYA 336

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGC-QIHSNVE-LGEFAARRILALDPEDVSSY 446
           R G    A+E LY +P +  +  W A++ GC Q     E L  F   +I  ++P+ V+  
Sbjct: 337 RFGFLDVAREILYKIP-EKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMV 395

Query: 447 VMLSNALSVAGKWD 460
             LS A S  G  D
Sbjct: 396 NCLS-ACSQLGALD 408



 Score = 45.1 bits (105), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 5/144 (3%)

Query: 26  NYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           ++ IE  K S+      A+      CG+     +   QVF+E+P  N ++ T +I   A 
Sbjct: 414 HHYIERHKLSIDVALGTALVDMYAKCGN----IARALQVFEEIPQRNCLTWTAVICGLAL 469

Query: 86  QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA-WATKVGLQSNVF 144
             + ++A+  FS+M+ + I P E TF  V+ +      +  G++  +  ++K  +   + 
Sbjct: 470 HGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLK 529

Query: 145 VGSAILDLYIKLSSIEEATRVFED 168
             S ++DL  +   +EEA  + ++
Sbjct: 530 HYSCMVDLLGRAGHLEEAEELVKN 553


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/471 (33%), Positives = 271/471 (57%), Gaps = 9/471 (1%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           +CG      S   ++F  +   +VVS  ++I  FA+ +  E+A+ LF +M   N+ P+  
Sbjct: 173 ACGD----LSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSV 228

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T   V+ +     DL  G+ + ++  + G++ ++ + +A+LD+Y K  S+++A ++F++ 
Sbjct: 229 TMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEM 288

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              +V S+T M+ G  K   ++ A  +F  MP + + +WN +I  Y Q G+ +EA+ +F 
Sbjct: 289 PERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFN 348

Query: 230 EM-LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           E+ L +   P+  TL   + A A + A+ +G   H    +    L+  + +SL+  YAKC
Sbjct: 349 ELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKC 408

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS+E +L VF  + ER++  W+A+I G   +GRG+ AI+ F  M+   ++PN VT   +L
Sbjct: 409 GSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVL 468

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            AC+H GLV++G  +F +  +E    + PE  HYACMVD+L R+G  +EA E + ++   
Sbjct: 469 CACSHAGLVDEGRVFFHE--MEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTT 526

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W ALLG C +H NVELGE A+ ++L L+P +  + V+LSN  +  G+W+ VS +R
Sbjct: 527 PSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELR 586

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + M++  + + PGCS IE    VH F+ GD  H ++  IY+ L     +++
Sbjct: 587 KLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLK 637



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 153/283 (54%), Gaps = 14/283 (4%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAIIAAA 251
           A  LF ++P  N+ +WN +I  Y+ +    ++  +F+++L +   +PN  T P  I AA+
Sbjct: 78  ARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAAS 137

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            + A  +G + H  A+K    +D+++ NSL+ FY  CG +  +  +F  ++ +++V+WN+
Sbjct: 138 ELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNS 197

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I  +AQ    E+A+E F +M    + PN VT++G+L AC     +E G    S   +E 
Sbjct: 198 MISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSY--IER 255

Query: 372 PGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
            G +K +   C  M+D+ ++ G   +A++   ++P +  +  W  +L G       ++G+
Sbjct: 256 KG-IKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMP-ERDVFSWTIMLDG-----YAKMGD 308

Query: 430 FAARRIL--ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
           + A R++  A+  ++++++ +L +A    GK      I  E++
Sbjct: 309 YDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQ 351



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 179/394 (45%), Gaps = 68/394 (17%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEFTFGSVIPSSTAL 121
            +FD++P  N+ +  T+I  +A      ++  +F  +L      P++FTF  VI +++ L
Sbjct: 80  NLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASEL 139

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           +   +G  +H  A K+    ++++ ++++  Y     +  A R+F+     +VVS+ +MI
Sbjct: 140 KASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMI 199

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    EDAL+L                               F++M RE ++PN  
Sbjct: 200 SAFAQGNCPEDALEL-------------------------------FLKMERENVMPNSV 228

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A A    L  G+   +   +   K+D+ + N+++  Y KCGS++D+  +FD++
Sbjct: 229 TMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEM 288

Query: 302 TERN-------------------------------IVTWNAVICGYAQNGRGEEAIEFFE 330
            ER+                               I  WN +I  Y QNG+ +EA+  F 
Sbjct: 289 PERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFN 348

Query: 331 RMRINGI-RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLS 388
            ++++ I +P+ VTL+  L AC   G ++ G       K E  G++   H  + +VD+ +
Sbjct: 349 ELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKRE--GIVLNCHLISSLVDMYA 406

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           + G  ++A E  Y +  +  +  W A++ G  +H
Sbjct: 407 KCGSLEKALEVFYSVE-ERDVYVWSAMIAGLGMH 439


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/462 (35%), Positives = 251/462 (54%), Gaps = 35/462 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
             S  +VFDE+ + NV +   ++    +    E  ++LF  M  L   P EFT GSV+  
Sbjct: 39  LDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRG 98

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L     GKQ+HA+  K G + N+ VGS++  +Y+K  S+ E  +V            
Sbjct: 99  CAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVI----------- 147

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                               + M  RNVV+WN +I G +Q G  E  ++L+  M   GL 
Sbjct: 148 --------------------KAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLR 187

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  TL   I ++A +A L  G+  HA A+K      V V +SLIS Y+KCG +EDS+  
Sbjct: 188 PDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKA 247

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
                  + V W+++I  Y  +GRGEEA+  FE+M   G+  N VT L LL+AC+H GL 
Sbjct: 248 LLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLK 307

Query: 358 EKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           EKG  +F +  +E  G LKP  EHY C+VDLL RSG   EA+  +  +P +  +  WK L
Sbjct: 308 EKGMGFF-KLMVEKYG-LKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTL 365

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C+IH N ++    A  IL L+P+D ++YV+LSN  + A +W +VS +R  M+++ + 
Sbjct: 366 LSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVK 425

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + PG SW+E+K++V  F  GD++H M++EI   L+   E+++
Sbjct: 426 KEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMK 467



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 139/275 (50%), Gaps = 2/275 (0%)

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
           +Y K+  I+EA   F      N++S+  +I G ++    + A+K+F EM  RNV +WNAM
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           + G  Q   NE  + LF EM   G +P+  TL   +   A + A   GK  HA  +K+  
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY 120

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           + ++ VG+SL   Y K GS+ +   V   +  RN+V WN +I G AQNG  E  ++ +  
Sbjct: 121 EFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNM 180

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           M+++G+RP+ +TL+ ++ +      + +G    ++A ++          + ++ + S+ G
Sbjct: 181 MKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEA-IKAGANSAVAVLSSLISMYSKCG 239

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
             +++ + L D    P    W +++     H   E
Sbjct: 240 CLEDSMKALLDCE-HPDSVLWSSMIAAYGFHGRGE 273


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 165/463 (35%), Positives = 258/463 (55%), Gaps = 49/463 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF E+   + VS  TII    +   YE+ I   + ML   +   +FT+GSV+ +   L+ 
Sbjct: 388 VFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQS 447

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G  +H  A K GL  + FV S ++D+Y K                          CG
Sbjct: 448 LEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCK--------------------------CG 481

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           ++      +ALKL   +  + +VSWN++I G+S   ++EEA   F EML  G+ P+H T 
Sbjct: 482 MIT-----EALKLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTY 536

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + AN+A + +GK  H   +K     D F+ ++L+  YAKCG+M DS L+F+K+ +
Sbjct: 537 ATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQK 596

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            + V+WNA+ICGYA +G+G EA+E FER +   + PN  T + +L AC+H GL++ G  Y
Sbjct: 597 LDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRY 656

Query: 364 F----SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           F    S+ KLE     + EH+ACM          +EA +F+  +P +     WK LL  C
Sbjct: 657 FHLMTSRYKLEP----QLEHFACMGP--------QEALKFIRSMPLEADAVIWKTLLSIC 704

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +I  +VE+ E AA  +L LDP+D S Y++LSN  + +GKW +VS  RR M++  + + PG
Sbjct: 705 KIRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPG 764

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS--CTEQIREFE 520
           CSWIE++S++H F+ G++ H  + E+Y +L +  C  ++  +E
Sbjct: 765 CSWIEVQSEMHGFLVGEKVHPRSREVYEMLNNLICEMKLSGYE 807



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 194/460 (42%), Gaps = 76/460 (16%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +PD +VVS   ++  + ++  + + + L   M    + P   T   ++ +   L+DL LG
Sbjct: 123 MPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALG 182

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            Q+HA A K GL+ +V  GSA++D+Y K  S+E+A   F      N VS+  +I G ++ 
Sbjct: 183 VQIHALAVKTGLEMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQN 242

Query: 188 ERFE---------------------------------------------------DALKL 196
           E++                                                    DA + 
Sbjct: 243 EQYMRGLELLCRCKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRA 302

Query: 197 FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAAL 256
           F  +P+  V + NAM+ G  +TG   EA+ LF  M R G+                   +
Sbjct: 303 FFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGI---------------GFGVV 347

Query: 257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
            +   F ACA      +DV V N+++  Y KC ++ ++ LVF ++ +R+ V+WN +I   
Sbjct: 348 SLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAAL 407

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-L 375
            QN   E+ I     M  +G+  +  T   +L AC   GL    Y      K    G+ L
Sbjct: 408 EQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKAC--AGLQSLEYGLVVHGKAIKSGLGL 465

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE--FAAR 433
                + +VD+  + G   EA + L+D      +  W +++ G  ++   E  +  F+  
Sbjct: 466 DAFVSSTVVDMYCKCGMITEALK-LHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEM 524

Query: 434 RILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREM 469
             + + P+  +   +L +  ++A    GK  +   I++EM
Sbjct: 525 LDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEM 564



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 2/226 (0%)

Query: 110 TFGSV--IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           TF  V  + +S     L  G+  HA     G    +FV + +L +Y +      A  VF+
Sbjct: 31  TFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFD 90

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
              + + VS+ TM+           A  L   MP  +VVSWNA++ GY Q G   + V L
Sbjct: 91  TMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGL 150

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
            IEM R G+ P+ +TL   + A   +  L +G   HA AVK   ++DV  G++L+  Y K
Sbjct: 151 SIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGK 210

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           C S+ED+L  F  + ERN V+W AVI G  QN +    +E   R +
Sbjct: 211 CRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRGLELLCRCK 256



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 185/427 (43%), Gaps = 65/427 (15%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           ++LLC C++   L+   +LH+ A        K S  ++   AI    V   +++D     
Sbjct: 249 LELLCRCKAITCLSTARQLHAHAIK-----NKFSSDRVVGTAI----VDVYAKADSLVDA 299

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            + F  +P+  V +   ++    +     EA+ LF  M       S   FG V       
Sbjct: 300 RRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFM-----TRSGIGFGVV------- 347

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
              +L     A A   G   +V V +AILDLY K  ++ EA  VF               
Sbjct: 348 ---SLSGVFSACAEVKGFDVDVCVRNAILDLYGKCKALVEAYLVF--------------- 389

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                           QEM  R+ VSWN +I    Q    E+ +    EMLR G+  +  
Sbjct: 390 ----------------QEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDF 433

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A A + +L  G   H  A+K    LD FV ++++  Y KCG + ++L + D++
Sbjct: 434 TYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRI 493

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             + +V+WN++I G++ N + EEA +FF  M   G++P+  T   +L +C +   +E G 
Sbjct: 494 GGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGK 553

Query: 362 SYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAK---EFLYDLPFDPGIGFWKALLG 417
               Q   ++  ML  E   + +VD+ ++ G   +++   E +  L F      W A++ 
Sbjct: 554 QIHGQIIKQE--MLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVS----WNAMIC 607

Query: 418 GCQIHSN 424
           G  +H  
Sbjct: 608 GYALHGQ 614



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 32/202 (15%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++ D +    +VS  +II  F+     EEA   FS ML + ++P  FT+ +V+ S   L 
Sbjct: 488 KLHDRIGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLA 547

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            + LGKQ+H    K  +  + F+ S ++D+Y K  ++ ++  +FE     + VS+  MIC
Sbjct: 548 TIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMIC 607

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                          GY+  G+  EA+ +F    +  + PNH+T
Sbjct: 608 -------------------------------GYALHGQGFEALEMFERTQKANVAPNHAT 636

Query: 243 LPCAIIAAANIAALGMG-KSFH 263
               + A +++  L  G + FH
Sbjct: 637 FVAVLRACSHVGLLDDGCRYFH 658



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 35/205 (17%)

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN- 305
           + A+A  +AL  G++ HA  +       +FV N L+  YA+CG    +  VFD +  R+ 
Sbjct: 38  LCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFDTMPHRDT 97

Query: 306 ------------------------------IVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
                                         +V+WNA++ GY Q G   + +     M   
Sbjct: 98  VSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGLSIEMARC 157

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFK 394
           G+ P+  TL  LL AC   GL +        A     G+ +     + +VD+  +    +
Sbjct: 158 GVAPDRTTLAVLLKACG--GLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGKCRSLE 215

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGC 419
           +A  F + +     +  W A++ GC
Sbjct: 216 DALHFFHGMGERNSVS-WGAVIAGC 239


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 265/458 (57%), Gaps = 6/458 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD++   +VVS T++   +       + I LF  M L  IR +  T  S++P+    + 
Sbjct: 134 VFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA--DY 191

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           + LG+++H +  +  ++ NV+V SA++++Y     +++A  VF+  ++ ++VS+  M+  
Sbjct: 192 IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTA 251

Query: 184 LLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
               + +E  L LF +M       N  SWNA I G  Q G++E A+ +  +M   G+ PN
Sbjct: 252 YFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPN 311

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T+  A+    N+ +L  GK  H    +     DV +  +L+  YAKCG +E S  VF+
Sbjct: 312 RITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFN 371

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            +  +++V WN +I   + +G+G E++  F +M  +G+ PN VT +G+L  C+H+ L ++
Sbjct: 372 TMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADE 431

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G   F+    E       +HY+CMVD+LSR+GR +EA +F+  +P +P    W ALLG C
Sbjct: 432 GLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGAC 491

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +++ NVELG  AA ++  ++P++  +YV+LSN L  A KW   S IR+ M++KG+ + PG
Sbjct: 492 RVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPG 551

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            SW+++K+KV+ FVTGD+++   D IY  L    E++R
Sbjct: 552 RSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMR 589



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 158/362 (43%), Gaps = 56/362 (15%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++P+ ++ + T +I    +    ++AI ++S +L  N+RP +F   SV  +  A  D
Sbjct: 33  LFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAASGD 92

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L + K++H  A + G   ++ +G+A++D++ K   +  A  VF+D    +VVS       
Sbjct: 93  LVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVS------- 145

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                   W +M   Y   G   + + LF EM   G+  N  T+
Sbjct: 146 ------------------------WTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTV 181

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A+   L  G+  H   ++   + +V+V ++L++ YA    ++ + LVFD +  
Sbjct: 182 SSILPACADYIKL--GREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYH 239

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+IV+WN ++  Y  N   E  +  F +MR  GI+ N  +    +  C   G  E     
Sbjct: 240 RDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGI 299

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
               K++D G +KP     +  L                    PG    ++L GG +IH 
Sbjct: 300 L--CKMQDSG-IKPNRITIVSAL--------------------PGCTNLESLRGGKEIHG 336

Query: 424 NV 425
            V
Sbjct: 337 YV 338



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 151/318 (47%), Gaps = 22/318 (6%)

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T +  G LKR     AL LF ++P  ++ +W  +I G++Q G  ++A++++  +L   + 
Sbjct: 20  TCLNSGDLKR-----ALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVR 74

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+   L     A A    L + K  H  A++F    D+ +GN+LI  + KC  +  +  V
Sbjct: 75  PDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCV 134

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-NHTGL 356
           FD +  +++V+W ++   Y   G   + I  F  M +NGIR N +T+  +L AC ++  L
Sbjct: 135 FDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKL 194

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
             + + +  + ++E    +     + +V++ + S   K+A+  ++D  +   I  W  +L
Sbjct: 195 GREVHGFILRNEMEGNVYVS----SALVNMYASSLGLKQAR-LVFDSMYHRDIVSWNVML 249

Query: 417 GGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
               ++   E  LG F   R   +     S    +S  +   G+ +    I  +M++ G+
Sbjct: 250 TAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQ-NGQHELALGILCKMQDSGI 308

Query: 475 --------TRVPGCSWIE 484
                   + +PGC+ +E
Sbjct: 309 KPNRITIVSALPGCTNLE 326



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 5/191 (2%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           HQ+  E   LN  S    I    +   +E A+ +  +M    I+P+  T  S +P  T L
Sbjct: 266 HQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNL 325

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           E L  GK++H +  +     +V + +A++ LY K   +E +  VF      +VV++ TMI
Sbjct: 326 ESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMI 385

Query: 182 CGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GL 236
                  +  ++L LF +M       N V++  ++ G S +   +E + +F  M  E  +
Sbjct: 386 MANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSI 445

Query: 237 VPNHSTLPCAI 247
            P+     C +
Sbjct: 446 TPDADHYSCMV 456



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 42/75 (56%)

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           LI      G ++ +L +FDK+ E ++ TW  +I G+ Q+G  ++AI+ +  +    +RP+
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 341 GVTLLGLLWACNHTG 355
              LL +  AC  +G
Sbjct: 77  KFVLLSVAKACAASG 91


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 264/458 (57%), Gaps = 11/458 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+ +P+ NVVS  T+I  F ++   +EA  LF+RM   ++  S  T  + +  +  ++D
Sbjct: 182 LFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV-ISWTTMVAGLSKNGRIDD 240

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             L         K+ ++ NV   + ++  Y +   ++EA ++FE      + S+ TMI G
Sbjct: 241 ARL------LFDKMPVR-NVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITG 293

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHST 242
            ++  + E A+  F +M ++NVV+W A+I G+ Q GR+EEA+ +F EM     V PN  T
Sbjct: 294 FIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGT 353

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD--K 300
               + A + +AAL  G+  H    K + +    V ++LI+ Y+KCG +E +  +FD   
Sbjct: 354 FVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGS 413

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +  R++V+WN +I  YA +G G +AI  F+ M+  G RP+ VT + LL AC+H GLV++G
Sbjct: 414 IGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEG 473

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              F     +    L+ +H+ C+VDL  R+GR +EA +F+  L   P    W ALL GC 
Sbjct: 474 LKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCN 533

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H +++LG+  A ++L  +PE+  +Y++LSN  +  GKW   + +R +MK+KG+ + PGC
Sbjct: 534 VHGHIDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGC 593

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           SWIE+ + VHVFV GD +H   + IY +L     ++++
Sbjct: 594 SWIEVGNTVHVFVVGDNSHREFENIYLLLHDLHTKMKK 631



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 201/436 (46%), Gaps = 83/436 (19%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     QVF+E+PD +VVS T +I  + K    EEA  LF R                  
Sbjct: 81  KIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDR------------------ 122

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
            + A++                   NV   +A++  Y++ + IEEA R+F+     NV+S
Sbjct: 123 -NDAIK-------------------NVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVIS 162

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM----- 231
           + TMI G  ++   + AL LF+ MP RNVVSWN +I  + Q  R +EA  LF  M     
Sbjct: 163 WNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDV 222

Query: 232 -----LREGLVPN---------HSTLPCAIIAAANIAALGMGKSFHAC-AVKFLGKL--- 273
                +  GL  N            +P   + + N   +G  ++     A K   ++   
Sbjct: 223 ISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPER 282

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           ++   N++I+ + + G +E ++  F K++ +N+VTW AVI G+ Q+GR EEA++ F  M+
Sbjct: 283 ELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQ 342

Query: 334 -INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
             N ++PN  T + +L AC+    + +G   +   S+   ++      +  + ++++ S+
Sbjct: 343 AANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVA----DVVSALINMYSK 398

Query: 390 SGRFKEAKEFLYDLPFDPG-IGF-----WKALLGGC--QIHSNVELGEFAARRILALDPE 441
            G  + A++      FD G IG      W  ++       H +  +  F   + L   P+
Sbjct: 399 CGELELARKI-----FDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPD 453

Query: 442 DVSSYVMLSNALSVAG 457
           +V +Y+ L +A S AG
Sbjct: 454 NV-TYIALLSACSHAG 468



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 171/386 (44%), Gaps = 79/386 (20%)

Query: 80  IGRFAKQHHYEEAIYLFSRMLLL------NIRPSEFTFGSVIPS-STALEDLNLGKQLHA 132
           +G    +H     +  F R   L      +I  S+F+   V+P  S+ + D +       
Sbjct: 9   VGEICGKHKTTTLLSSFGRYAFLLCNLHNSILSSQFSTCQVVPKISSPVRDFSA------ 62

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK------ 186
                   SNV   + ++    K   I EA +VFE+  + +VVS+T +I G +K      
Sbjct: 63  -------NSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEE 115

Query: 187 --------------------------RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                       R E+A +LF  MP +NV+SWN MI GY++ G 
Sbjct: 116 AKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGW 175

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL---DVFV 277
            ++A++LF E + E  V + +T+  A +    +            A +   ++   DV  
Sbjct: 176 IDQALDLF-EXMPERNVVSWNTVITAFMQRRRVDE----------AQELFNRMPERDVIS 224

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
             ++++  +K G ++D+ L+FDK+  RN+V+WN +I GYAQN R +EA + FE+M    +
Sbjct: 225 WTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPEREL 284

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
                 + G +      G +E+   +F   K+ +  ++    +  ++    + GR +EA 
Sbjct: 285 SSWNTMITGFI----QNGKLERAVDFFY--KMSNKNVVT---WTAVISGHVQDGRSEEAL 335

Query: 398 EFLYDLP----FDPGIGFWKALLGGC 419
           +   ++       P  G + ++LG C
Sbjct: 336 KIFSEMQAANNVKPNEGTFVSVLGAC 361



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 95/188 (50%), Gaps = 7/188 (3%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFG 112
           ++ K       F ++ + NVV+ T +I    +    EEA+ +FS M    N++P+E TF 
Sbjct: 296 QNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFV 355

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-- 170
           SV+ + + L  L  G+Q+H   +K   Q    V SA++++Y K   +E A ++F+D    
Sbjct: 356 SVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIG 415

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVN 226
           + +VVS+  MI           A+ LF EM       + V++ A++   S  G  +E + 
Sbjct: 416 HRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLK 475

Query: 227 LFIEMLRE 234
           LF  ++R+
Sbjct: 476 LFENLVRD 483



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
           F    +V   N LI+   K G + ++  VF+++ +R++V+W AVI GY + G  EEA   
Sbjct: 60  FSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTL 119

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS 388
           F+R   N    N VT   L+        +E+    F    +++        +  M++  +
Sbjct: 120 FDR---NDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKN-----VISWNTMIEGYA 171

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYV 447
           R G   +A +    +P +  +  W  ++        V+     A+ +    PE DV S+ 
Sbjct: 172 RKGWIDQALDLFEXMP-ERNVVSWNTVITAFMQRRRVD----EAQELFNRMPERDVISWT 226

Query: 448 MLSNALSVAGKWDN 461
            +   LS  G+ D+
Sbjct: 227 TMVAGLSKNGRIDD 240


>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
          Length = 748

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 174/508 (34%), Positives = 275/508 (54%), Gaps = 24/508 (4%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSV--SCGSESDKFSSVHQVFDEVPD 70
           +L  L +LH+ A    + T +A+ Q      +R  S+  SC           ++FD  P 
Sbjct: 240 TLAHLKQLHAHA----VVTGRAAAQTTTFHLLRFASLRLSC------LPYARRLFDATPS 289

Query: 71  LNVV-----SATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDL 124
            NV       +         Q H  +++ LF RML      P++F +  V+ ++ A+  +
Sbjct: 290 PNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLVLRAACAI-GV 348

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            L + +H  A K G   + F+ +++LD Y +   + +A ++F+   + NVVS+T ++ G 
Sbjct: 349 QLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGY 408

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
            +  +  DA+ LF+ MP R+V +WNA+I G +Q G   EAV +F  M+ EG  PN +T+ 
Sbjct: 409 ARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVS 468

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
           C + A  ++  L +GK  H  A +        V N LI  Y KCG++ ++  +FD  ++R
Sbjct: 469 CLLSACGHLGMLKIGKVIHGYAWRSCVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDR 528

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
            + TWN++I   A +G  E AI  F  MR  G++P+ VT +GLL AC H G V++G  YF
Sbjct: 529 GLTTWNSLINCLALHGCSESAIAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYF 588

Query: 365 SQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
               + D   ++P  EHY C+VDLL R+GRF++A  F+ D+   P    W +LL  C+IH
Sbjct: 589 EL--MCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNACRIH 646

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM-TRVPGCS 481
            ++EL E A R +L L+P + +  VML+N  S  G W+ V  +R+ MKE     ++PGCS
Sbjct: 647 RHLELAEHAIRNLLDLNPSNANYVVMLANLYSEGGFWEEVRKVRKLMKEDVTGKKLPGCS 706

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           WIE+  K   F +GD  H  +++IY  L
Sbjct: 707 WIEVDRKTRRFYSGDDGHPESEDIYDTL 734


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 180/545 (33%), Positives = 280/545 (51%), Gaps = 85/545 (15%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           S+ CG    +     Q+FD +P+ ++V+  +II  + K    +EA+ ++  M+  N+ P 
Sbjct: 91  SLKCG----EIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPD 146

Query: 108 EFTFGSVIPSSTALEDLNLGKQL---HAWATKVGLQ-SNVFVGSAILDLYIKLSSIEEAT 163
           E+T  SV     A  DL+L K+    H  A  +GL+ SNVFVGSA++D+Y+K     EA 
Sbjct: 147 EYTLSSVFK---AFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAK 203

Query: 164 RVF----------------------EDTH-------------NPNVVSYTT--------- 179
            V                       EDT               PN  +Y +         
Sbjct: 204 LVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLK 263

Query: 180 ------MICGLLKRERFE--------------------DALKLFQEMPHRNVVSWNAMIG 213
                 +I GL+ +  FE                    D+L +F+ + + N V+W ++I 
Sbjct: 264 DIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLIS 323

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           G  Q GR E A+  F +M+R+ + PN  TL  A+   +N+A    G+  H    K+    
Sbjct: 324 GLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDR 383

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           D + G+ LI  Y KCG  + + LVFD L+E ++++ N +I  YAQNG G EA+E FERM 
Sbjct: 384 DKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMI 443

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
             G++PN VT+L +L ACN++GLVE+G   F   + +D  ML  +HYACMVD+L R+GR 
Sbjct: 444 NLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFR-KDKIMLTNDHYACMVDMLGRAGRL 502

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
           +EA+  + ++  +P +  W+ LL  C++H  VE+ E   R+IL + P D  + ++LSN  
Sbjct: 503 EEAEMLITEVT-NPDLVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLILLSNLY 561

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           +  GKW  V  ++ +MKE  + + P  SW+EI  + H F+ GD   H N E   +L +  
Sbjct: 562 ASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHTFMAGDLFSHPNSE--QILENLE 619

Query: 514 EQIRE 518
           E I++
Sbjct: 620 ELIKK 624



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 102/183 (55%), Gaps = 1/183 (0%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P  +S + ++   LK      A +LF  MP R++V+WN++I  Y +  R++EAV ++  M
Sbjct: 79  PVELSGSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLM 138

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGS 290
           +   ++P+  TL     A ++++     +  H  AV   L   +VFVG++L+  Y K G 
Sbjct: 139 ISNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGK 198

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
             ++ LV D++ E+++V   A+I GY+Q G   EA++ F+ M +  ++PN  T   +L +
Sbjct: 199 TREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLIS 258

Query: 351 CNH 353
           C +
Sbjct: 259 CGN 261



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 63/123 (51%)

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           G+ L+    KCG +  +  +FD + ER+IVTWN++I  Y ++ R +EA+E +  M  N +
Sbjct: 84  GSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNV 143

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            P+  TL  +  A +   L ++       A +    +      + +VD+  + G+ +EAK
Sbjct: 144 LPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAK 203

Query: 398 EFL 400
             L
Sbjct: 204 LVL 206


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 254/475 (53%), Gaps = 32/475 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T  +S  S+  K      +FD++   +++S   +I  +   H  E A+ LF  +L   
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            R +  T   +IP       L L + +   + K+G+     V +A+  +Y +L+ ++ A 
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                                          +LF E P +++ SWNAMI GY+Q G  + 
Sbjct: 371 -------------------------------QLFDESPEKSLASWNAMISGYTQNGLTDR 399

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A++LF EM+ + L PN  T+   + A A + AL +GK  H        + +V+V  +L+ 
Sbjct: 400 AISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVD 458

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCGS+ ++  +FD + ++N+VTWNA+I GY  +G G+EA++ F  M  +GI P GVT
Sbjct: 459 MYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVT 518

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            L +L+AC+H+GLV +G   F             EHYACMVD+L R+G+   A EF+  +
Sbjct: 519 FLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P +PG   W ALLG C IH N E+   A++R+  LDPE+V  YV+LSN  S    +   +
Sbjct: 579 PLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAA 638

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           ++R+ +K++ + + PGC+ IEI  + +VF +GDR+H     I+ +L   T ++RE
Sbjct: 639 SVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMRE 693



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 192/409 (46%), Gaps = 47/409 (11%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEFTFGSVIPSST 119
           V Q+F++V   ++     +I  F+     + +I+L++ +    N+RP  FT+   I +++
Sbjct: 65  VRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAAS 124

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            LED  +G  LHA +   G+ SN+FVGSAI+DLY K +                      
Sbjct: 125 RLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFT---------------------- 162

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                    R E A K+F  MP R+ V WN MI G+S+    E+++ +F++ML  GL  +
Sbjct: 163 ---------RAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFD 213

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            +TL   + A A +    +G      A K     DV+V   LIS Y+KCG      ++FD
Sbjct: 214 STTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFD 273

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL---WACNHTGL 356
           ++ + +++++NA+I GY  N   E A+  F  +  +G R N  TL+GL+      NH  L
Sbjct: 274 QIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQL 333

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
                       L+   +L+P     +  +  R    + A++ L+D   +  +  W A++
Sbjct: 334 SR----LIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ-LFDESPEKSLASWNAMI 388

Query: 417 GGCQIHSNVELGEFAARRILA-LDPEDVSSYVMLS-----NALSVAGKW 459
            G   +   +      + ++  L P  V+   +LS      ALS+ GKW
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSI-GKW 436



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 28  LIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH 87
           LI+     +  +  P++ T   +     ++     Q+FDE P+ ++ S   +I  + +  
Sbjct: 336 LIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNG 395

Query: 88  HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147
             + AI LF  M +  + P+  T  S++ +   L  L++GK +H       L+SNV+V +
Sbjct: 396 LTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVST 454

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV-- 205
           A++D+Y K  SI EA ++F+   + NVV++  MI G       ++ALKLF EM    +  
Sbjct: 455 ALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPP 514

Query: 206 --VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
             V++ +++   S +G   E   +F  M    G  P      C +
Sbjct: 515 TGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMV 559


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 163/490 (33%), Positives = 267/490 (54%), Gaps = 26/490 (5%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF- 111
           + + +      +F+ + + NVVS  T++  +      E+A  LF+RM + +         
Sbjct: 115 ARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLC 174

Query: 112 -----GSVIPSSTALEDLNLGKQLHAWATKV-GL-----------------QSNVFVGSA 148
                GS+  +    E + + + + +W T + GL                 + NV   +A
Sbjct: 175 GLVRSGSLERARKMFERMPV-RDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNA 233

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           ++  Y +   IEEA  +F      +V S+  MI G ++ +  + A +LF EMP RNV++W
Sbjct: 234 MISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITW 293

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
             M+ GY Q  ++E A+ LF  ML +G+ PN  T   ++ A +N+AAL  G+  H    K
Sbjct: 294 TTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICK 353

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
              + D FV ++L++ YAKCG +  +  VFD   E+++++WN +I  YA +G G EA+  
Sbjct: 354 TPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHL 413

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS 388
           ++ M+ NG +PN  T +GLL AC+H GLV++G   F     ++  +++ EHY C+VDL S
Sbjct: 414 YKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCS 473

Query: 389 RSGRFKEAKEFLYDLPFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447
           R+GR ++AK  +      P     W ALLGGC  H N  +G+ AA+ +L  +P++  +Y 
Sbjct: 474 RAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYT 533

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYA 507
           +L N  + AGKW   + IR EM  +G+ + PGCSWIE+ +KVHVFV+ D++H  +D I  
Sbjct: 534 LLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLIND 593

Query: 508 VLRSCTEQIR 517
           +L+     +R
Sbjct: 594 LLQDIHRIMR 603



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 179/371 (48%), Gaps = 27/371 (7%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + S   ++FD +PD +VVS T ++  +A++   +EA  LF R    + R +  T+ +++ 
Sbjct: 56  RVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRP---DARRNVVTWTALLS 112

Query: 117 SSTALEDLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
                  ++  + L       G+ + NV   + +L+ Y  +  +E+A+ +F      +  
Sbjct: 113 GYARARRVDEAEALFE-----GMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAG 167

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+  ++CGL++    E A K+F+ MP R+V+SW  MI G ++ G  ++A  LF       
Sbjct: 168 SWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLF------- 220

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFH-ACAVKFLGKL---DVFVGNSLISFYAKCGSM 291
                  +P   + + N    G  ++     A+    K+   DV   N +I+ + +   +
Sbjct: 221 -----DAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDL 275

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           + +  +FD++ +RN++TW  ++ GY Q  + E A++ F  M + GI+PN VT LG L AC
Sbjct: 276 KSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDAC 335

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           ++   + +G     Q   + P        + +++L ++ G  + A+  ++D   +  +  
Sbjct: 336 SNLAALCEG-QQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARN-VFDFSMEKDLIS 393

Query: 412 WKALLGGCQIH 422
           W  ++     H
Sbjct: 394 WNGIIAAYAHH 404



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 18/199 (9%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N  ++  A  G + D+  +FD + +R++V+W A++  YA+ G  +EA   F+R      R
Sbjct: 45  NWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR---PDAR 101

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEA 396
            N VT   LL        V++  + F        GM +     +  M++  +  GR ++A
Sbjct: 102 RNVVTWTALLSGYARARRVDEAEALFE-------GMAERNVVSWNTMLEAYTAVGRVEDA 154

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSV 455
                 +P     G W  LL G     ++E     AR++    P  DV S+  + + L+ 
Sbjct: 155 SALFNRMPVRDA-GSWNILLCGLVRSGSLE----RARKMFERMPVRDVMSWTTMISGLAR 209

Query: 456 AGKWDNVSNIRREMKEKGM 474
            G  D+   +   M E+ +
Sbjct: 210 NGSVDDAWVLFDAMPERNV 228


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/461 (34%), Positives = 251/461 (54%), Gaps = 4/461 (0%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +  Q+FDE  + N+V   TI+  +       + + +   ML    RP + T  S I +  
Sbjct: 284 AARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACA 343

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            L DL++GK  HA+  + GL+    + +AI+D+Y+K    E A +VFE   N  VV++ +
Sbjct: 344 QLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNS 403

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           +I GL++    E A ++F EM  R++VSWN MIG   Q    EEA+ LF EM  +G+  +
Sbjct: 404 LIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGD 463

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T+     A   + AL + K       K    +D+ +G +L+  +++CG    ++ VF 
Sbjct: 464 RVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFK 523

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ +R++  W A I   A  G  E AIE F  M    ++P+ V  + LL AC+H G V++
Sbjct: 524 RMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQ 583

Query: 360 GYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           G   F    +E    ++P   HY CMVDLL R+G  +EA + +  +P +P    W +LL 
Sbjct: 584 GRQLF--WSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLA 641

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C+ H NVEL  +AA ++  L PE V  +V+LSN  + AGKW +V+ +R +MKEKG+ +V
Sbjct: 642 ACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKV 701

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           PG S IE++  +H F +GD +H  N  I  +L     ++ E
Sbjct: 702 PGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSE 742



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 193/402 (48%), Gaps = 41/402 (10%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  +A     ++AI L+ +ML++ I P ++TF  ++ + + +  L+ G Q+H    K+G
Sbjct: 101 LIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMG 160

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L+ ++FV ++++  Y +                          CG +   R     KLF 
Sbjct: 161 LEGDIFVSNSLIHFYAE--------------------------CGKVDLGR-----KLFD 189

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            M  RNVVSW ++I GYS    ++EAV+LF +M   G+ PN  T+ C I A A +  L +
Sbjct: 190 GMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLEL 249

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GK   +   +   +L   + N+L+  Y KCG +  +  +FD+   +N+V +N ++  Y  
Sbjct: 250 GKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVH 309

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +    + +   + M   G RP+ VT+L  + AC   G +  G S  S A +   G+   +
Sbjct: 310 HEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKS--SHAYVLRNGLEGWD 367

Query: 379 HYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA 437
           + +  ++D+  + G+ + A +    +P +  +  W +L+ G     ++EL   A R    
Sbjct: 368 NISNAIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIAGLVRDGDMEL---AWRIFDE 423

Query: 438 LDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +   D+ S+  +  AL     ++    + REM+ +G   +PG
Sbjct: 424 MLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQG---IPG 462



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 199/419 (47%), Gaps = 21/419 (5%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E  K     ++FD + + NVVS T++I  ++ +   +EA+ LF +M    + P+  T  
Sbjct: 176 AECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMV 235

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            VI +   L+DL LGK++ ++ +++G++ +  + +A++D+Y+K   I  A ++F++  N 
Sbjct: 236 CVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANK 295

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           N+V Y T++   +  E   D L +  EM    P  + V+  + I   +Q G      +  
Sbjct: 296 NLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSH 355

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV-KFLGKLDVFVGNSLISFYAK 287
             +LR GL      +  AII       +  GK   AC V + +    V   NSLI+   +
Sbjct: 356 AYVLRNGL-EGWDNISNAIID----MYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVR 410

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
            G ME +  +FD++ ER++V+WN +I    Q    EEAIE F  M+  GI  + VT++G+
Sbjct: 411 DGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGI 470

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
             AC + G ++      +  +  D   +  +    +VD+ SR G    A      +    
Sbjct: 471 ASACGYLGALDLAKWVCTYIEKNDI-HVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KR 528

Query: 408 GIGFWKALLGGCQIHSNVE-----LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
            +  W A +G   +  N E       E   +++    P+DV  +V L  A S  G  D 
Sbjct: 529 DVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKV---KPDDV-VFVALLTACSHGGSVDQ 583



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 146/308 (47%), Gaps = 45/308 (14%)

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           +N +I GY+  G  ++A+ L+++ML  G+VP+  T P  + A + I AL  G   H   +
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           K   + D+FV NSLI FYA+CG ++    +FD + ERN+V+W ++I GY+     +EA+ 
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY---SYFSQAKLEDPGMLKPEHYACMV 384
            F +M   G+ PN VT++ ++ AC     +E G    SY S+  +E    L       +V
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGME----LSTIMVNALV 273

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD----- 439
           D+  + G    A++      FD      K L+    I SN    E+A+  ++ LD     
Sbjct: 274 DMYMKCGDICAARQI-----FDECAN--KNLVMYNTIMSNYVHHEWASDVLVILDEMLQK 326

Query: 440 ---PEDVSSYVMLSNALSVA-------GK-------------WDNVSNIRREMKEKGMTR 476
              P+ V+   MLS   + A       GK             WDN+SN   +M  K   R
Sbjct: 327 GPRPDKVT---MLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKR 383

Query: 477 VPGCSWIE 484
              C   E
Sbjct: 384 EAACKVFE 391



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 94/195 (48%), Gaps = 13/195 (6%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           SS   VF  +   +V + T  IG  A + + E AI LF+ ML   ++P +  F +++ + 
Sbjct: 516 SSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTAC 575

Query: 119 TALEDLNLGKQLHAWATKV--GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVV 175
           +    ++ G+QL  W+ +   G++ ++     ++DL  +   +EEA  + +     PN V
Sbjct: 576 SHGGSVDQGRQLF-WSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDV 634

Query: 176 SYTTMICGLLKRERFE----DALKLFQEMPHRNVVSWNAMIGG-YSQTGRNEEAVNLFIE 230
            + +++    K +  E     A KL Q  P R  V  + ++   Y+  G+  +   + ++
Sbjct: 635 VWGSLLAACRKHKNVELAHYAAEKLTQLAPER--VGIHVLLSNIYASAGKWTDVARVRLQ 692

Query: 231 MLREGL--VPNHSTL 243
           M  +G+  VP  S++
Sbjct: 693 MKEKGVQKVPGSSSI 707


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 254/475 (53%), Gaps = 32/475 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T  +S  S+  K      +FD++   +++S   +I  +   H  E A+ LF  +L   
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            R +  T   +IP       L L + +   + K+G+     V +A+  +Y +L+ ++ A 
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                                          +LF E P +++ SWNAMI GY+Q G  + 
Sbjct: 371 -------------------------------QLFDESPEKSLASWNAMISGYTQNGLTDR 399

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A++LF EM+ + L PN  T+   + A A + AL +GK  H        + +V+V  +L+ 
Sbjct: 400 AISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVD 458

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCGS+ ++  +FD + ++N+VTWNA+I GY  +G G+EA++ F  M  +GI P GVT
Sbjct: 459 MYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVT 518

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            L +L+AC+H+GLV +G   F             EHYACMVD+L R+G+   A EF+  +
Sbjct: 519 FLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P +PG   W ALLG C IH N E+   A++R+  LDPE+V  YV+LSN  S    +   +
Sbjct: 579 PLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAA 638

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           ++R+ +K++ + + PGC+ IEI  + +VF +GDR+H     I+ +L   T ++RE
Sbjct: 639 SVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMRE 693



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 192/409 (46%), Gaps = 47/409 (11%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSST 119
           V Q+F++V   ++     +I  F+     + +I+L++ +    N+RP  FT+   I +++
Sbjct: 65  VRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAAS 124

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            LED  +G  LHA +   G+ SN+FVGSAI+DLY K +                      
Sbjct: 125 RLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFT---------------------- 162

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                    R E A K+F  MP R+ V WN MI G+S+    E+++ +F++ML  GL  +
Sbjct: 163 ---------RAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFD 213

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            +TL   + A A +    +G      A K     DV+V   LIS Y+KCG      ++FD
Sbjct: 214 STTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFD 273

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL---WACNHTGL 356
           ++ + +++++NA+I GY  N   E A+  F  +  +G R N  TL+GL+      NH  L
Sbjct: 274 QIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQL 333

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
                       L+   +L+P     +  +  R    + A++ L+D   +  +  W A++
Sbjct: 334 SR----LIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ-LFDESPEKSLASWNAMI 388

Query: 417 GGCQIHSNVELGEFAARRILA-LDPEDVSSYVMLS-----NALSVAGKW 459
            G   +   +      + ++  L P  V+   +LS      ALS+ GKW
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSI-GKW 436



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 6/225 (2%)

Query: 28  LIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH 87
           LI+     +  +  P++ T   +     ++     Q+FDE P+ ++ S   +I  + +  
Sbjct: 336 LIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNG 395

Query: 88  HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147
             + AI LF  M +  + P+  T  S++ +   L  L++GK +H       L+SNV+V +
Sbjct: 396 LTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVST 454

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV-- 205
           A++D+Y K  SI EA ++F+   + NVV++  MI G       ++ALKLF EM    +  
Sbjct: 455 ALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPP 514

Query: 206 --VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
             V++ +++   S +G   E   +F  M    G  P      C +
Sbjct: 515 TGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMV 559


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 252/464 (54%), Gaps = 32/464 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+    +  ++VF ++ +  +VS T+II    ++  + EAI LF  M    +RP  +   
Sbjct: 305 SKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVT 364

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +      L+ G+++H    K  + SN+ V +A++++Y K  S+EEA  +F      
Sbjct: 365 SVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIF------ 418

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                     ++P +N+VSWN MIGGYSQ     EA+ LF++M 
Sbjct: 419 -------------------------SQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQ 453

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           ++ L P+  T+ C + A A +AAL  G+  H   ++     D+ V  +L+  Y KCG + 
Sbjct: 454 KQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLV 512

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  +FD + +++++ W  +I GY  +G G+EAI  FE+MR+ GI P   +   +L+AC 
Sbjct: 513 LAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACT 572

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H+GL+++G+  F   K E     K EHYACMVDLL RSG    A +F+  +P  P    W
Sbjct: 573 HSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIW 632

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALL GC+IH +VEL E  A  I  L+PE+   YV+L+N  + A KW+ V  I+R + + 
Sbjct: 633 GALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKG 692

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           G+    GCSWIE++ K ++F  GD +H     I ++LR  T ++
Sbjct: 693 GLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKM 736



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 208/458 (45%), Gaps = 49/458 (10%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +L +C    SL    ++HS+     I +   ++ ++    +    V+CG          +
Sbjct: 63  VLQLCAELKSLEDGKRVHSI-----ISSNGMAIDEVLGAKLVFMYVNCGD----LVKGRR 113

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD + +  +     ++  +AK  +Y E++ LF +M  L IR   +TF  V+    A   
Sbjct: 114 IFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAK 173

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +   K++H +  K+G  S   V ++++  Y K   +E A R+                  
Sbjct: 174 VRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESA-RI------------------ 214

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                       LF E+  R+VVSWN+MI G +  G +   +  FI+ML  G+  + +TL
Sbjct: 215 ------------LFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATL 262

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              ++A AN+  L +G++ HA  VK      V   N+L+  Y+KCG++  +  VF K+ E
Sbjct: 263 VNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGE 322

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
             IV+W ++I  + + G   EAI  F+ M+  G+RP+   +  ++ AC  +  ++KG   
Sbjct: 323 TTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREV 382

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            +  K  + G   P   A M ++ ++ G  +EA      LP    I  W  ++GG   +S
Sbjct: 383 HNHIKKNNMGSNLPVSNALM-NMYAKCGSMEEANLIFSQLPV-KNIVSWNTMIGG---YS 437

Query: 424 NVELGEFAARRIL----ALDPEDVSSYVMLSNALSVAG 457
              L   A +  L     L P+DV+   +L     +A 
Sbjct: 438 QNSLPNEALQLFLDMQKQLKPDDVTMACVLPACAGLAA 475



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 98/238 (41%), Gaps = 27/238 (11%)

Query: 197 FQEMPHRNV-VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
             E  H NV V  NA I  + + G    A+ L     R  L  N  T    +   A + +
Sbjct: 15  LSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELN--TYCSVLQLCAELKS 72

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           L  GK  H+        +D  +G  L+  Y  CG +     +FD +    I  WN ++  
Sbjct: 73  LEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSE 132

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG-- 373
           YA+ G   E++  FE+M+  GIR +  T   +L          KG++  + AK+ +    
Sbjct: 133 YAKIGNYRESVGLFEKMQELGIRGDSYTFTCVL----------KGFA--ASAKVRECKRV 180

Query: 374 -----MLKPEHYACMVDLLSRSGRFK----EAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                 L    Y  +V+ L  +  FK    E+   L+D   D  +  W +++ GC ++
Sbjct: 181 HGYVLKLGFGSYNAVVNSLI-AAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMN 237


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 150/425 (35%), Positives = 248/425 (58%), Gaps = 4/425 (0%)

Query: 63   QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            +VFDE+ + ++VS  ++I  + +   Y E + +F  M + +++    T   V+ + T L 
Sbjct: 851  KVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLG 910

Query: 123  DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +  +   +  +  +  ++ +V++G+ ++D+Y + S ++ A RVF+   + N+VS+  MI 
Sbjct: 911  EWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIM 970

Query: 183  GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
            G  K      A KLF +MPHR+V+SW +MI  YSQ G+  +AV LF EM+   + P+  T
Sbjct: 971  GYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEIT 1030

Query: 243  LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
            +   + A A+I AL +G++ H    K+    D++VGN+LI  Y KCG++E  L VF+++ 
Sbjct: 1031 VASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMG 1090

Query: 303  ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +R+ V+W +VI G A NG  + A+  F  M   G+RP   T +G+L AC H G+V+KG  
Sbjct: 1091 KRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLE 1150

Query: 363  YFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
            YF    +E    L PE  HY C+VDLLSRSG    A EF+  +P DP +  W+ LL   Q
Sbjct: 1151 YFES--MERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQ 1208

Query: 421  IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            +H N+ L E A +++L  DP +  +Y++ SN  + + +W++V  +RR M+E  + +    
Sbjct: 1209 VHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSAS 1268

Query: 481  SWIEI 485
            S +EI
Sbjct: 1269 SSVEI 1273



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 164/329 (49%), Gaps = 28/329 (8%)

Query: 193  ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
            A +LF+++P   +  WN MI G+SQT +  EA+  +  M  + L  N+ T P  + A A 
Sbjct: 749  ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACAR 808

Query: 253  IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
            I+ +    + HA  +K     D+FV N+LI  YA    +  +  VFD+++ER++V+WN++
Sbjct: 809  ISNVSC-TTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSL 867

Query: 313  ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN---HTGLVEKGYSYFSQAKL 369
            ICGY +  R  E +  FE MR+  ++ + VT++ ++ AC      G+V+    Y  + K+
Sbjct: 868  ICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKV 927

Query: 370  EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
            E    L       ++D+  R      A+  ++D   D  +  W A++ G     N+    
Sbjct: 928  EVDVYLG----NTLIDMYGRRSMVDLARR-VFDRMRDRNMVSWNAMIMGYGKAGNL---- 978

Query: 430  FAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREM-----KEKGMT---RVPGC 480
             AAR++    P  DV S+  + ++ S AG++     + +EM     K   +T    +  C
Sbjct: 979  VAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSAC 1038

Query: 481  SWI---EIKSKVHVFVTGDRNHHMNDEIY 506
            + I   ++   VH ++   R + +N +IY
Sbjct: 1039 AHIGALDVGEAVHEYI---RKYDVNADIY 1064



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 107/212 (50%), Gaps = 31/212 (14%)

Query: 60   SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
            +  ++FD++P  +V+S T++I  +++   + +A+ LF  M++  ++P E T  SV+ +  
Sbjct: 980  AARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACA 1039

Query: 120  ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
             +  L++G+ +H +  K  + ++++VG+A++D+Y K  ++E+   VFE+    + VS+T+
Sbjct: 1040 HIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTS 1099

Query: 180  MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
            +I GL                               +  G  + A+NLF  MLREG+ P 
Sbjct: 1100 VIAGL-------------------------------AVNGSADSALNLFSLMLREGVRPT 1128

Query: 240  HSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
            H T    ++A A+   +  G  +     +  G
Sbjct: 1129 HGTFVGVLLACAHAGVVDKGLEYFESMERVYG 1160



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/306 (21%), Positives = 151/306 (49%), Gaps = 15/306 (4%)

Query: 62   HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +++F ++P   +     +I  +++ +   EAI  ++ M    +  +  T+  ++ +   +
Sbjct: 750  NELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARI 809

Query: 122  EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +++    +HA   K+G  S++FV +A++  Y     +  A +VF++    ++VS+ ++I
Sbjct: 810  SNVSC-TTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLI 868

Query: 182  CGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            CG  +  R+ + L +F+EM   +V    V+   ++   +  G     V+  IE + E  V
Sbjct: 869  CGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLG-EWGVVDAMIEYIEENKV 927

Query: 238  PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL---DVFVGNSLISFYAKCGSMEDS 294
                 L   +I           +S    A +   ++   ++   N++I  Y K G++  +
Sbjct: 928  EVDVYLGNTLIDMYG------RRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAA 981

Query: 295  LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
              +FD +  R++++W ++I  Y+Q G+  +A+  F+ M +  ++P+ +T+  +L AC H 
Sbjct: 982  RKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHI 1041

Query: 355  GLVEKG 360
            G ++ G
Sbjct: 1042 GALDVG 1047


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 260/460 (56%), Gaps = 35/460 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  +VFD++ + +VVS  T+IG +A+     EAI LF RM + +++P+E T  +V+ +  
Sbjct: 190 SARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACA 249

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              DL   KQ+H +  + G+  +  + SA++D+Y K                        
Sbjct: 250 RSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCK------------------------ 285

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CG     R      LF +MP +N+  WN MI G+ +    EEA++LF EM   G+  +
Sbjct: 286 --CGCYPLAR-----DLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 338

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T+   +IA  ++ AL +GK  H    K   ++DV +G +L+  YAKCGS+E ++ VF 
Sbjct: 339 KVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQ 398

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ E++++TW A+I G A  G+G +A+E F  M+++ ++P+ +T +G+L AC+H GLV +
Sbjct: 399 EMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNE 458

Query: 360 GYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           G +YF+   + +   ++P  EHY CMVD+L R+GR  EA++ + ++P  P       LL 
Sbjct: 459 GIAYFNS--MPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLS 516

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C+IH N+ + E AA++++ LDP++  +YV+LSN  S    W+    +R  M E+ + + 
Sbjct: 517 ACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKP 576

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           PGCS IE+   VH FV GD +H  + EIY  L     +++
Sbjct: 577 PGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLK 616



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 169/358 (47%), Gaps = 42/358 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF+++P+    +  +II  +  ++   +AI  +  M+L  + P  FTF S+  S   L +
Sbjct: 96  VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE 155

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              GKQLH  +TK+G  S+ ++ + ++++Y                            CG
Sbjct: 156 ---GKQLHCHSTKLGFASDAYIQNTLMNMYSN--------------------------CG 186

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            L   R     K+F +M +++VVSW  MIG Y+Q     EA+ LF  M    + PN  TL
Sbjct: 187 CLVSAR-----KVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITL 241

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A    L   K  H    +        + ++L+  Y KCG    +  +F+K+ E
Sbjct: 242 VNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPE 301

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG--- 360
           +N+  WN +I G+ ++   EEA+  F  M+++G++ + VT+  LL AC H G +E G   
Sbjct: 302 KNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWL 361

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           + Y  + K+E    L       +VD+ ++ G  + A     ++P +  +  W AL+ G
Sbjct: 362 HVYIEKEKIEVDVALG----TALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALIVG 414



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 11/251 (4%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P   S     C L        A  +F ++P+    + N++I GY+      +A+  +  
Sbjct: 71  DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 130

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+ +GL P+  T P       +   L  GK  H  + K     D ++ N+L++ Y+ CG 
Sbjct: 131 MMLQGLDPDRFTFPSLF---KSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 187

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  VFDK+  +++V+W  +I  YAQ     EAI+ F RM I  ++PN +TL+ +L A
Sbjct: 188 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTA 247

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C  +  +E     + Y  +  +    +L     + ++D+  + G +  A++    +P + 
Sbjct: 248 CARSRDLETAKQVHKYIDETGIGFHTVLT----SALMDVYCKCGCYPLARDLFNKMP-EK 302

Query: 408 GIGFWKALLGG 418
            +  W  ++ G
Sbjct: 303 NLFCWNIMING 313



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 14/252 (5%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ +L  C  S  L    ++H     Y+ ET       + T A+      CG     +  
Sbjct: 241 LVNVLTACARSRDLETAKQVH----KYIDET-GIGFHTVLTSALMDVYCKCGC----YPL 291

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
              +F+++P+ N+     +I    +   YEEA+ LF+ M L  ++  + T  S++ + T 
Sbjct: 292 ARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTH 351

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L  L LGK LH +  K  ++ +V +G+A++D+Y K  SIE A RVF++    +V+++T +
Sbjct: 352 LGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTAL 411

Query: 181 ICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-G 235
           I GL    +   AL+LF EM    V    +++  ++   S  G   E +  F  M  + G
Sbjct: 412 IVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYG 471

Query: 236 LVPNHSTLPCAI 247
           + P+     C +
Sbjct: 472 IQPSIEHYGCMV 483


>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
 gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
 gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
 gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
          Length = 488

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 159/435 (36%), Positives = 254/435 (58%), Gaps = 20/435 (4%)

Query: 82  RFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           R  ++HH +       R L  N  + P+      ++PS+ A  +     Q+HA   K G 
Sbjct: 45  RAFRRHHLD------GRALHANPALVPALAACARLLPSAAAEAE-----QIHALLVKSGD 93

Query: 140 Q---SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKL 196
               S V+  ++++ +Y +L  + +A ++F+      VVS+  ++ G+++    + A ++
Sbjct: 94  PPSVSGVYASTSLVRVYARLGRLGDARKMFDGMPVKTVVSWNVLLDGIVRASDLDAAWEV 153

Query: 197 FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNHSTLPCAIIAAANIAA 255
           F EMP RNVVSWN +I G+ + G  +EAV+LF EM +  GL P+ +T+   + A  ++  
Sbjct: 154 FVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMVGFVSAVRDMGV 213

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           LG+G+  H   ++    LD  +G +LI+ Y +CGSM D+   F  +  +N+  W +VI G
Sbjct: 214 LGIGRCAHGYVIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKNVEQWTSVIGG 273

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           +A +G  E A+  F  MR  GI PNGVT L +L AC+H GLV +G+ YF+   +   G+ 
Sbjct: 274 FAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFKYFNL--MRSMGIK 331

Query: 376 KP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR 434
              +HY C++DLL R+G  +EA E    LP DPG+  W +LL  CQ H NVE+ E AAR+
Sbjct: 332 STMQHYGCLIDLLGRAGFLEEAFELASSLPEDPGLVIWSSLLAACQSHGNVEMAEVAARK 391

Query: 435 ILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVT 494
           +   +P   SSYV+LSN  + AG+W+++   RR+M+E G+ + PG SWIE+  +VH FV+
Sbjct: 392 LAHAEPRHGSSYVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGLSWIELDGRVHSFVS 451

Query: 495 GDRNHHMNDEIYAVL 509
            D+ H  +++IY +L
Sbjct: 452 ADKLHTESEDIYQML 466



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 5/190 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-LLLNIRPSEFTFGSVIPSSTAL 121
           +VF E+P+ NVVS  T+I  F +    +EA+ LF+ M ++  + P E T    + +   +
Sbjct: 152 EVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMVGFVSAVRDM 211

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L +G+  H +  +     +  +G A++++Y +  S+ +A R F    + NV  +T++I
Sbjct: 212 GVLGIGRCAHGYVIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKNVEQWTSVI 271

Query: 182 CGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            G       E AL+LF EM       N V++ A++   S  G   E    F  M   G+ 
Sbjct: 272 GGFAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFKYFNLMRSMGIK 331

Query: 238 PNHSTLPCAI 247
                  C I
Sbjct: 332 STMQHYGCLI 341



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 8/177 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D F    + F  V   NV   T++IG FA   H E A+ LF+ M  L I P+  T
Sbjct: 246 CGSMGDAF----RCFSSVASKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNGVT 301

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED-T 169
           F +V+ + +    +N G +       +G++S +     ++DL  +   +EEA  +     
Sbjct: 302 FLAVLNACSHGGLVNEGFKYFNLMRSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLP 361

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEE 223
            +P +V +++++         E A    +++ H   R+  S+  +   Y++ G+ E+
Sbjct: 362 EDPGLVIWSSLLAACQSHGNVEMAEVAARKLAHAEPRHGSSYVLLSNTYARAGQWED 418


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 263/469 (56%), Gaps = 18/469 (3%)

Query: 56  DKFSSVHQVFDEVPD--LNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSE 108
           D F     +FD +P    N+VS  T++          EA+ + +R+     L   +    
Sbjct: 117 DTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVVARLARDRFLGPGLAMDR 176

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  SV  +   +      +++H      G++  V + +A+++ Y K   +EEA  +F+ 
Sbjct: 177 FTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHLFDQ 236

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               + V++T+MI G  + ++ ++AL++F  MP ++ V+W A+I G+ Q G  + A+ LF
Sbjct: 237 ISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELF 296

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV--KFLGK--LDVFVGNSLISF 284
             ML EG+ P    L   + A A +  +  GK  H C++  + +G    ++F+ N+L+  
Sbjct: 297 ERMLAEGVSPTTFALVSVLGACAKLGLVTRGKELH-CSILRRSIGSDPFNIFIHNALVDM 355

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+KCG M  ++ VF ++ ER+ ++WN+++ G++ NG G++++  FE M + G+RP  VT 
Sbjct: 356 YSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTF 415

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           L +L AC+H+GLV  G        +ED G+  + EHYA  +D L R+ + +EA EF+ DL
Sbjct: 416 LAVLTACSHSGLVSNGRLILES--MEDHGVEPRAEHYAAFIDALGRNRQLEEAIEFIKDL 473

Query: 404 P--FDPGI-GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           P    PG  G W ALLG C++H N+EL E  A  +  L+P +   YVMLSN  + AG+WD
Sbjct: 474 PSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFKLEPGNSGRYVMLSNIYAAAGQWD 533

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +   +R  MKEKG+ +    SWIE++S  HVFV  D +H   DEIY +L
Sbjct: 534 DARRVRGLMKEKGLKKDQAYSWIEVRSLKHVFVADDMSHCEADEIYEML 582



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 184/418 (44%), Gaps = 55/418 (13%)

Query: 107 SEFTFGSVIP----SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           S F    +IP    + +  + L LG+ +HA   K  L S+  + + ++ LY +L S   A
Sbjct: 31  SAFAIPELIPLLERAISTGDVLRLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAA 90

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKR-ERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTG 219
              F+D  + N  SY T++  LL+R + F DAL LF  MP   RN+VS+N ++      G
Sbjct: 91  VAAFDDLPHKNAHSYNTLLAALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHG 150

Query: 220 RNEEAVNLFIEMLRE-----GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
           R  EA+ +   + R+     GL  +  T+     A A I A    +  H   V    +L 
Sbjct: 151 RQAEALRVVARLARDRFLGPGLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELT 210

Query: 275 VFVGN-------------------------------SLISFYAKCGSMEDSLLVFDKLTE 303
           V + N                               S+IS Y +   ++++L VFD + +
Sbjct: 211 VIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPD 270

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY-- 361
           ++ V W A+I G+ QNG  + A+E FERM   G+ P    L+ +L AC   GLV +G   
Sbjct: 271 KDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKEL 330

Query: 362 --SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
             S   ++   DP       +  +VD+ S+ G    A    + +P    I  W +++ G 
Sbjct: 331 HCSILRRSIGSDP--FNIFIHNALVDMYSKCGDMTAAMAVFHRMPERDFIS-WNSMVTGF 387

Query: 420 QIHSNV---ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
             H+ +    L  F    +  + P  V+   +L+ A S +G   N   I   M++ G+
Sbjct: 388 S-HNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLT-ACSHSGLVSNGRLILESMEDHGV 443


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 156/462 (33%), Positives = 261/462 (56%), Gaps = 9/462 (1%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +Q+  E  + + +S   +I        +++A+ LF  +L+  I P  FT GS++     +
Sbjct: 360 YQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADM 419

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +  GK++H+ A   GLQSN FVG A++++Y K + I  A   F++    +  ++  +I
Sbjct: 420 TCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALI 479

Query: 182 CGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            G  +  +     +L + M       NV +WN+++ G  +  + + A+ LF EM    L 
Sbjct: 480 SGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLR 539

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T+   + A + +A +  GK  HA +++     D  +G +L+  YAKCGS++    V
Sbjct: 540 PDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQV 599

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           ++K++  N+V  NA++  YA +G GEE I  F RM  + +RP+ VT L +L +C H G +
Sbjct: 600 YNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSI 659

Query: 358 EKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           + GY  F    L +   + P  +HY CMVDLLSR+G+  EA + + ++P +     W AL
Sbjct: 660 KIGYECF---YLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSAL 716

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           LGGC IH  V LGE AA +++ L+P +  +YV+L+N  + AG+W +++  R  M +KGM 
Sbjct: 717 LGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQ 776

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + PGCSWIE +  VH+F+  D++H   +EIY +L + T+ IR
Sbjct: 777 KSPGCSWIEDRDGVHIFLASDKSHQRVEEIYFMLDNLTKFIR 818



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 176/358 (49%), Gaps = 20/358 (5%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFD 66
           I +SS SL    +LHS    + I+T   +   ++T  ++  S++       F     +FD
Sbjct: 40  ILQSSNSLTLGKQLHS----HSIKTGFYNHNFVQTKLLQMYSIN-----SSFEDAWHMFD 90

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL--LNIRPSEFTFGSVIPSSTALEDL 124
           ++   N+ S T ++        + +   LF   L   L  +   F F  V+     L DL
Sbjct: 91  KMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDL 150

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            LG+Q+H    K G  +NV+VG+A++D+Y K  S++EA +V E     + VS+ ++I   
Sbjct: 151 ELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITAC 210

Query: 185 LKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           +      +AL L + M       NVV+W+A+IGG+S    + E+V LF  M+  G+ P+ 
Sbjct: 211 VANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDA 270

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL   + A + +  L +GK  H   V+     + FV N+L+  Y +CG M+ +  +F K
Sbjct: 271 RTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSK 330

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
              +   ++N +I GY +NG   +A E F +M   G+  + ++     W C  +G V+
Sbjct: 331 FARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRIS-----WNCMISGHVD 383


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 283/513 (55%), Gaps = 12/513 (2%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNV 73
           LN  ++L SL P + + +            +R   +   S     +    +FDE    ++
Sbjct: 118 LNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDL 177

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS  T+I  +A+ +  E A+ LF  M    I P EFTF ++    + L + N+GKQ+HA 
Sbjct: 178 VSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQ 237

Query: 134 ATK--VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSYTTMICGLLKRERF 190
             K    + SN+ + SAI+D+Y K   I  A RVF     + +  ++++M+CG  +    
Sbjct: 238 VYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEI 297

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
             A KLF  M  R+V+SW AMI GYSQ G+  EA+ LF EM   G+ P+  TL   + A 
Sbjct: 298 NVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSAC 357

Query: 251 ANIAALGMGKS-FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT- 308
           A + A  +GK  +H      +   +  +  +++  YAKCGS++ +L +F ++  +N+ T 
Sbjct: 358 ARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVG-KNMKTG 416

Query: 309 --WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
             +N++I G AQ+G GE AI  F  +   G++P+ VT +G+L AC H+GL+E+G   F  
Sbjct: 417 FVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFES 476

Query: 367 AKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
             + +   +KP  EHY CMVDLL R G  +EA + +  +PF+     W+ALL  C+ H N
Sbjct: 477 --MFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGN 534

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           V++GE A +++L ++ +  + YV+LSN L+ A +W+    +R+ M++ G+ + PG S+IE
Sbjct: 535 VKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIE 594

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +   +H FV  D++H    EI  +L+    +++
Sbjct: 595 LGGAIHRFVASDKSHPQGKEIELMLKDMAMRLK 627



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 199/406 (49%), Gaps = 43/406 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-SEFTFGSVIPSSTALE 122
           +F ++   N+    T+I  +++  +  EAI L+  M+   I P + FTF  ++ S   L 
Sbjct: 66  LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G ++H+   K G +S++FV +A++ LY    ++  A  +F+++   ++VSY TMI 
Sbjct: 126 SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIK 185

Query: 183 GLLKRERFEDALKLFQEMPHRNVV----SWNAM-----------IGG--YSQTGRNEEAV 225
           G  +  + E AL LF EM +  ++    ++ A+           +G   ++Q  +N  ++
Sbjct: 186 GYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSI 245

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           +  I +L+  +V  ++   C +I  A      MG S  A A            +S++  Y
Sbjct: 246 DSNI-LLKSAIVDMYAK--CGLINIAERVFSTMGTSKSAAA-----------WSSMVCGY 291

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           A+CG +  +  +F+ + ER++++W A+I GY+Q G+  EA+E F+ M   GI+P+ VTL+
Sbjct: 292 ARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLV 351

Query: 346 GLLWACNHTGLVEKG----YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
            +L AC   G  + G    + Y          +L     A ++D+ ++ G    A E   
Sbjct: 352 AVLSACARLGAFDLGKRLYHQYIENGVFNQNTILT----AAVMDMYAKCGSIDSALEIFR 407

Query: 402 DLPFDPGIGF-WKALLGGCQIHSNVELGEFAARRILA--LDPEDVS 444
            +  +   GF + +++ G   H   E      R +++  L P++V+
Sbjct: 408 RVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVT 453



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 174/399 (43%), Gaps = 51/399 (12%)

Query: 116 PSSTAL----EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
           PSS  L    +    G Q+HA     GL   +F  S ++  +  L S             
Sbjct: 10  PSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGS------------- 56

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                          ++  + +  LF ++   N+  WN MI GYS++    EA+ L++ M
Sbjct: 57  ---------------KDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSM 101

Query: 232 LREGLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           + +G+ P N+ T P  + + A +++L  G   H+  +K   + D+FV N+LI  Y+  G+
Sbjct: 102 IAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGN 161

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  +FD+   R++V++N +I GYA+  + E A+  F  M+ +GI P+  T + L   
Sbjct: 162 LNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSV 221

Query: 351 CN-----HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
           C+     + G       Y +   ++   +LK    + +VD+ ++ G    A+     +  
Sbjct: 222 CSVLNEPNVGKQIHAQVYKNLRSIDSNILLK----SAIVDMYAKCGLINIAERVFSTMGT 277

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDVSSYVMLSNALSVAGKWDNVS 463
                 W +++ G         GE    R L   +   DV S+  + +  S AG+     
Sbjct: 278 SKSAAAWSSMVCG-----YARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEAL 332

Query: 464 NIRREMKEKGMT--RVPGCSWIEIKSKVHVFVTGDRNHH 500
            + +EM+  G+    V   + +   +++  F  G R +H
Sbjct: 333 ELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYH 371


>gi|326487167|dbj|BAJ89568.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 255/468 (54%), Gaps = 36/468 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTF 111
           S + +F     VFD +   NVV+  T++    +    E+A+ LF  M+   +  P+EF F
Sbjct: 242 SRNGEFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAF 301

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
              +    A E + LG QLH+ A K GL S++ V +A+L +Y ++  +++   +F    +
Sbjct: 302 SIAL---GACESIALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIED 358

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P++VS                               W A I  Y Q G  E+A+ L   M
Sbjct: 359 PDIVS-------------------------------WTAAISAYFQNGHGEKAIALLSRM 387

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             +GL PN       + + A++A L  G+ FH  A+K    +    GN+LI+ Y+KCG +
Sbjct: 388 HSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQI 447

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             + L FD +  R++ +WN++I G+AQ+G  +  ++ F  M  NG  PN  TLLG+L AC
Sbjct: 448 VPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAAC 507

Query: 352 NHTGLVEKGYSYFSQAKLEDPG-MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           NH GLV++G ++F  A     G  L P HYACMVD+L RSGRF +A   + ++PF+PG+ 
Sbjct: 508 NHAGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFEPGVL 567

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            WK LL  C++H N+E G  AA +++ L  +D +SYV++S   ++ G+W +   +RR M 
Sbjct: 568 VWKTLLASCRLHGNLETGRLAAEKLVELSDQDSASYVLMSGIHAMHGEWRDADMVRRRMD 627

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           E G+ +  G SW+E++++VH FV  D +H  +  IY +L   ++ +R+
Sbjct: 628 EAGVRKEAGRSWVEVRNEVHTFVAQDVSHPDSPSIYRMLWELSDAMRD 675



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 167/363 (46%), Gaps = 43/363 (11%)

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
           E PD  VV+ T+++    +   +  A     +M+   + P+E T  S++ +   L    L
Sbjct: 159 ESPD--VVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPLV---L 213

Query: 127 GKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           G Q+H +  K +G   +V+  S ++D Y +    + A  VF++                 
Sbjct: 214 GVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDN----------------- 256

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLP 244
                         +  +NVV+W  M+  + + GR E+A+ LF EM+ EG+V PN     
Sbjct: 257 --------------LQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFS 302

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
            A+ A  +IA   +G   H+ A+K      + V N+L+S Y + G ++    +F  + + 
Sbjct: 303 IALGACESIA---LGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDP 359

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           +IV+W A I  Y QNG GE+AI    RM   G+ PN      +L +C    L+++G  + 
Sbjct: 360 DIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFH 419

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
             A L+    +K      ++++ S+ G+   A+   +D+     +  W +L+ G   H  
Sbjct: 420 CLA-LKLGCDVKTCTGNALINMYSKCGQIVPAR-LAFDIMDHRDVTSWNSLIHGHAQHGE 477

Query: 425 VEL 427
           V++
Sbjct: 478 VDM 480



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 9/225 (4%)

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-- 240
           GL+K  R  DAL LF  MP +NVV+W + + G ++ GR E A  +F +M+  G+  N   
Sbjct: 38  GLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALNDFA 97

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
                A  AAA   AL  G+  H+ AV+  F+G  D +VG+ L+  YA+CGS   +  V 
Sbjct: 98  CNAALAACAAAGPGALRTGEQVHSLAVRAGFVG--DAWVGSCLVELYARCGSTRAAEAVL 155

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
            ++   ++V + +++    ++G    A E   +M  +G+ PN  T+  +L AC    L  
Sbjct: 156 ARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPLVLGV 215

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           + + Y  +A      +      + +VD  SR+G F  AK    +L
Sbjct: 216 QIHGYMIKAMGFSQSVYTS---STLVDFYSRNGEFDMAKTVFDNL 257


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/458 (35%), Positives = 263/458 (57%), Gaps = 39/458 (8%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGS 113
           +D  S+V +VFD++P+ N+VS  ++I  F   + Y+ A+ +F  +L    + P+E +  S
Sbjct: 294 ADMHSAV-RVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSS 352

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ +   +  LN G+Q+H    K GL    +V ++++D+Y K                  
Sbjct: 353 VLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFK------------------ 394

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                   C       F++ +KLFQ +  R+VV+WN ++ G+ Q  + EEA N F  M R
Sbjct: 395 --------CRF-----FDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRR 441

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG++P+ ++    + ++A++AAL  G + H   +K     ++ +  SLI+ YAKCGS+ D
Sbjct: 442 EGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVD 501

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VF+ + + N+++W A+I  Y  +G   + IE FE M   GI P+ VT + +L AC+H
Sbjct: 502 AYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSH 561

Query: 354 TGLVEKGYSYF-SQAKLED--PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           TG VE+G ++F S  K+ D  PG   PEHYACMVDLL R+G   EAK F+  +P  P   
Sbjct: 562 TGRVEEGLAHFNSMKKIHDMNPG---PEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPS 618

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALLG C+ + N+++G  AA R+  ++P +  +YV+L+N  + +G+ +  + +RR M 
Sbjct: 619 VWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMG 678

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAV 508
             G+ + PGCSWI++K+   VF   DR+H  +DEIY +
Sbjct: 679 VNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKM 716



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 194/405 (47%), Gaps = 44/405 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           FS  H  F       +V+ T++I   +  + + +A+ LF++M      P++FTF S++ +
Sbjct: 200 FSITHHHFK-----TIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSA 254

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           S A   +  G+QLH+   K G  +N+FVG+A++D+Y K + +  A RVF+     N+VS+
Sbjct: 255 SAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSW 314

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-L 236
            +MI G                  H N+                + AV +F ++LRE  +
Sbjct: 315 NSMIVGFF----------------HNNLY---------------DRAVGVFKDVLREKTV 343

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
           +PN  ++   + A AN+  L  G+  H   VK+      +V NSL+  Y KC   ++ + 
Sbjct: 344 IPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVK 403

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +F  + +R++VTWN ++ G+ QN + EEA  +F  MR  GI P+  +   +L +      
Sbjct: 404 LFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAA 463

Query: 357 VEKGYSYFSQAKLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           + +G +   Q  +   G +K       ++ + ++ G   +A +    +  D  +  W A+
Sbjct: 464 LHQGTAIHDQ--IIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAM 520

Query: 416 LGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
           +   Q+H  +N  +  F       ++P  V ++V + +A S  G+
Sbjct: 521 ISAYQLHGCANQVIELFEHMLSEGIEPSHV-TFVCVLSACSHTGR 564



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 110/219 (50%), Gaps = 7/219 (3%)

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVS----YTTMICGLLKRERFEDALKLFQEMPH-- 202
           +L+  I+  S++ AT++       N  S    +  +I    K      AL LF    H  
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           + +V+W ++I   S    + +A++LF +M   G  PN  T    + A+A    +  G+  
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H+   K     ++FVG +L+  YAKC  M  ++ VFD++ ERN+V+WN++I G+  N   
Sbjct: 268 HSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLY 327

Query: 323 EEAIEFFER-MRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + A+  F+  +R   + PN V++  +L AC + G +  G
Sbjct: 328 DRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG 366



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 25/187 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D +    QVF+ + D NV+S T +I  +       + I LF  ML   I PS  T
Sbjct: 496 CGSLVDAY----QVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVT 551

Query: 111 FGSVIPSST-------ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           F  V+ + +        L   N  K++H       +       + ++DL  +   ++EA 
Sbjct: 552 FVCVLSACSHTGRVEEGLAHFNSMKKIH------DMNPGPEHYACMVDLLGRAGWLDEAK 605

Query: 164 RVFED---THNPNVVSYTTMIC---GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
           R  E       P+V       C   G LK  R E A +LF+  P+ N  ++  +    ++
Sbjct: 606 RFIESMPMKPTPSVWGALLGACRKYGNLKMGR-EAAERLFEMEPY-NPGNYVLLANMCTR 663

Query: 218 TGRNEEA 224
           +GR EEA
Sbjct: 664 SGRLEEA 670


>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
 gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
          Length = 557

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 175/514 (34%), Positives = 268/514 (52%), Gaps = 42/514 (8%)

Query: 36  VQKLETPAIRTDSVSCGSESDKFSSVHQVFDE-VPDL--NVVSATTIIGRFAKQHH---- 88
           V+ L  PA    ++   S S + +    VFD  VP    NV   T  I  +A+       
Sbjct: 38  VRGLPLPARAAVALIASSHSPRHARA--VFDSAVPAASENVYLWTATIAAYARHASSSLS 95

Query: 89  -YEEAIYLFSRMLLLNI-RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
             E A+ LF  ML   + RP+ FT  SV+   +AL  +  G Q+H +    GL     VG
Sbjct: 96  AAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALRAVREGIQVHGFLFSAGLGRASHVG 155

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVV------------------------------- 175
           +A++D+Y  L  + +A RVF++  + NVV                               
Sbjct: 156 AALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMVACYVRAGDVEAGRDVFDRMAERDPI 215

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+ T++ G L++     A  LF+EMP RNV SWN +I   SQ G   +AV +F  M    
Sbjct: 216 SWNTLMMGYLRQGEAGVARDLFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLAR 275

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
             P+ +T+   + A A + +L +    H    K   +++  V NSLI  YAKCGS+  + 
Sbjct: 276 FQPDPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAH 335

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           L+F +   ++ V++N +IC  AQ+G G +A++ F+ M   G++P+ VT LG+L AC H G
Sbjct: 336 LLFVETRLKDTVSYNVMICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAG 395

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           LV  G  YF   +        P+HYACMVDL  R+G  +EA +    +P  P  G W AL
Sbjct: 396 LVHDGKFYFESMRTNYAIEQSPDHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGAL 455

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           +  C+ H NVE+G+ AAR ++A++P +  +YV+L+N L+   +WD V  + + M+ KG+ 
Sbjct: 456 INACRKHCNVEVGKVAARELIAIEPGNPGTYVLLANTLARGQQWDFVETVWQSMRGKGIE 515

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +  GCSW+E+   VH F+ G+ +H  +DEIY +L
Sbjct: 516 KTAGCSWLEVDRVVHEFLMGESSHPNSDEIYCIL 549


>gi|326522859|dbj|BAJ88475.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 691

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 255/468 (54%), Gaps = 36/468 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTF 111
           S + +F     VFD +   NVV+  T++    +    E+A+ LF  M+   +  P+EF F
Sbjct: 242 SRNGEFDMAKTVFDNLQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAF 301

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
              +    A E + LG QLH+ A K GL S++ V +A+L +Y ++  +++   +F    +
Sbjct: 302 SIAL---GACESIALGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIED 358

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P++VS                               W A I  Y Q G  E+A+ L   M
Sbjct: 359 PDIVS-------------------------------WTAAISAYFQNGHGEKAIALLSRM 387

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             +GL PN       + + A++A L  G+ FH  A+K    +    GN+LI+ Y+KCG +
Sbjct: 388 HSQGLTPNDYAFSSVLSSCADLALLDQGRQFHCLALKLGCDVKTCTGNALINMYSKCGQI 447

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             + L FD +  R++ +WN++I G+AQ+G  +  ++ F  M  NG  PN  TLLG+L AC
Sbjct: 448 VPARLAFDIMDHRDVTSWNSLIHGHAQHGEVDMVLKAFSEMCSNGGEPNESTLLGVLAAC 507

Query: 352 NHTGLVEKGYSYFSQAKLEDPG-MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           NH GLV++G ++F  A     G  L P HYACMVD+L RSGRF +A   + ++PF+PG+ 
Sbjct: 508 NHAGLVDEGVAFFRSAMAGLYGTFLTPPHYACMVDMLGRSGRFDDALCLIEEMPFEPGVL 567

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            WK LL  C++H N+E G  AA +++ L  +D +SYV++S   ++ G+W +   +RR M 
Sbjct: 568 VWKTLLASCRLHGNLETGRLAAEKLVELSDQDSASYVLMSGIHAMHGEWRDADMVRRRMD 627

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           E G+ +  G SW+E++++VH FV  D +H  +  IY +L   ++ +R+
Sbjct: 628 EAGVRKEAGRSWVEVRNEVHTFVAQDVSHPDSPSIYRMLWELSDAMRD 675



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 167/363 (46%), Gaps = 43/363 (11%)

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
           E PD  VV+ T+++    +   +  A     +M+   + P+E T  S++ +   L    L
Sbjct: 159 ESPD--VVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPLV---L 213

Query: 127 GKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           G Q+H +  K +G   +V+  S ++D Y +    + A  VF++                 
Sbjct: 214 GVQIHGYMIKAMGFSQSVYTSSTLVDFYSRNGEFDMAKTVFDN----------------- 256

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLP 244
                         +  +NVV+W  M+  + + GR E+A+ LF EM+ EG+V PN     
Sbjct: 257 --------------LQCKNVVTWCTMMQLHIRDGRPEDALQLFDEMISEGVVSPNEFAFS 302

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
            A+ A  +IA   +G   H+ A+K      + V N+L+S Y + G ++    +F  + + 
Sbjct: 303 IALGACESIA---LGSQLHSLAIKHGLASHLRVSNALLSMYGRIGLVQQLEAMFRGIEDP 359

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           +IV+W A I  Y QNG GE+AI    RM   G+ PN      +L +C    L+++G  + 
Sbjct: 360 DIVSWTAAISAYFQNGHGEKAIALLSRMHSQGLTPNDYAFSSVLSSCADLALLDQGRQFH 419

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
             A L+    +K      ++++ S+ G+   A+   +D+     +  W +L+ G   H  
Sbjct: 420 CLA-LKLGCDVKTCTGNALINMYSKCGQIVPAR-LAFDIMDHRDVTSWNSLIHGHAQHGE 477

Query: 425 VEL 427
           V++
Sbjct: 478 VDM 480



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 9/225 (4%)

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-- 240
           GL+K  R  DAL LF  MP +NVV+W + + G ++ GR E A  +F +M+  G+  N   
Sbjct: 38  GLMKAGRVADALDLFDRMPRKNVVAWTSAVSGLTRNGRPEAAGEMFADMVESGVALNDFA 97

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
                A  AAA   AL  G+  H+ AV+  F+G  D +VG+ L+  YA+CGS   +  V 
Sbjct: 98  CNAALAACAAAGPGALRTGEQVHSLAVRAGFVG--DAWVGSCLVELYARCGSTRAAEAVL 155

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
            ++   ++V + +++    ++G    A E   +M  +G+ PN  T+  +L AC    L  
Sbjct: 156 ARMESPDVVAYTSLVSALCRSGEFGMAAEALGQMMGHGVMPNEHTVTSILAACCPLVLGV 215

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           + + Y  +A      +      + +VD  SR+G F  AK    +L
Sbjct: 216 QIHGYMIKAMGFSQSVYTS---STLVDFYSRNGEFDMAKTVFDNL 257


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 254/460 (55%), Gaps = 32/460 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+++   NVVS  ++I  ++ +   +  I LF RM    IRP+  T  S++ + +   
Sbjct: 263 EVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSV 322

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +L LGK +H +  +  +++++FV S+++DLY K  +I  A  VF                
Sbjct: 323 NLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF---------------- 366

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                          Q MP  NVVSWN MI GY + G   EA+ +F +M + G+ P+  T
Sbjct: 367 ---------------QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 411

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A + +A L  GK  H   ++   +++  V  +L+  YAKCG+++++L +F++L 
Sbjct: 412 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 471

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER+ V+W ++I  Y  +G+  EA++ FE+M+ +  +P+ VT L +L AC+H GLV++G  
Sbjct: 472 ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCY 531

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALLGGCQI 421
           YF+Q   E       EHY+C++DLL R GR +EA E L   P     +G    L   C +
Sbjct: 532 YFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHL 591

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H  ++LGE   R ++  DP+D S+Y++LSN  +   KWD V  +R ++KE G+ + PGCS
Sbjct: 592 HKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCS 651

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
           WIE+  ++H FV  D++H   D IY  +      + ++++
Sbjct: 652 WIEVGKRIHPFVVEDKSHPQADMIYECMSILASHVEKYQV 691



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 197/422 (46%), Gaps = 42/422 (9%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + + +V   ++ + F    ++FDE+P+ +V S   +I  + +    E+A+ LF  M +  
Sbjct: 143 VMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSG 202

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            +P   T  +VI S   L DL  GK++H    + G   + FV SA++D+Y K   +E A 
Sbjct: 203 FKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAK 262

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            VFE     NVVS+ +M                               I GYS  G ++ 
Sbjct: 263 EVFEQIQRKNVVSWNSM-------------------------------IAGYSLKGDSKS 291

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            + LF  M  EG+ P  +TL   ++A +    L +GK  H   ++   + D+FV +SLI 
Sbjct: 292 CIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLID 351

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG++  +  VF  + + N+V+WN +I GY + G   EA+  F  MR  G++P+ +T
Sbjct: 352 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 411

Query: 344 LLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
              +L AC+   ++EKG   +++  ++KLE    +       ++D+ ++ G   EA    
Sbjct: 412 FTSVLPACSQLAVLEKGKEIHNFIIESKLE----INEVVMGALLDMYAKCGAVDEALHIF 467

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
             LP    +  W +++     H      L  F   +     P+ V+   +LS A S AG 
Sbjct: 468 NQLPERDFVS-WTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILS-ACSHAGL 525

Query: 459 WD 460
            D
Sbjct: 526 VD 527



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 199/422 (47%), Gaps = 45/422 (10%)

Query: 58  FSSVHQVFDEVPD-LNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEFTFGSVI 115
           F S   VF  + + L++     ++    K   + E + +F R+L    ++P  FT+ SV+
Sbjct: 54  FQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVL 113

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            + + L  +  GK +H    K G   +V V S+ + +Y K                    
Sbjct: 114 KACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAK-------------------- 153

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                 C +     FEDA+KLF EMP R+V SWN +I  Y Q G+ E+A+ LF EM   G
Sbjct: 154 ------CNV-----FEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSG 202

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
             P+  TL   I + A +  L  GK  H   V+    LD FV ++L+  Y KCG +E + 
Sbjct: 203 FKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAK 262

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VF+++  +N+V+WN++I GY+  G  +  IE F RM   GIRP   TL  +L AC+ + 
Sbjct: 263 EVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSV 322

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            ++ G   + Y  + ++E    +     + ++DL  + G    A+    ++P    +  W
Sbjct: 323 NLQLGKFIHGYIIRNRVEADIFVN----SSLIDLYFKCGNIGSAENVFQNMP-KTNVVSW 377

Query: 413 KALLGG-CQIHSNVE-LGEFAARRILALDPEDV--SSYVMLSNALSVAGKWDNVSNIRRE 468
             ++ G  ++ S +E L  F   R   + P+ +  +S +   + L+V  K   + N   E
Sbjct: 378 NVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 437

Query: 469 MK 470
            K
Sbjct: 438 SK 439



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 9/202 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+      S   VF  +P  NVVS   +I  + K   Y EA+ +F+ M    ++P   T
Sbjct: 356 CGN----IGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 411

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F SV+P+ + L  L  GK++H +  +  L+ N  V  A+LD+Y K  +++EA  +F    
Sbjct: 412 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 471

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVN 226
             + VS+T+MI       +  +ALKLF++M   +     V++ A++   S  G  +E   
Sbjct: 472 ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCY 531

Query: 227 LFIEMLRE-GLVPNHSTLPCAI 247
            F +M+ E G  P      C I
Sbjct: 532 YFNQMIAEYGFKPAVEHYSCLI 553


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/461 (34%), Positives = 257/461 (55%), Gaps = 36/461 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSS 118
           S  +VFD++ D  VVS  T+IG  A+     EA+ LF RM+   N++P+E T  +V+ + 
Sbjct: 138 SARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTAC 197

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
               DL + K++H +  + G   +V + + ++D+Y K                       
Sbjct: 198 ARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCK----------------------- 234

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
              CG ++  R      LF +   +N+ SWN MI G+ +    EEA+ LF EM  +G+  
Sbjct: 235 ---CGCVQLAR-----DLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKG 286

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  T+   ++A  ++ AL +GK  HA   K    +DV +G +L+  YAKCGS+E ++ VF
Sbjct: 287 DKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVF 346

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
            ++ E++++TW A+I G A  G+ E A+++F+ M I G++P+ +T +G+L AC+H G V+
Sbjct: 347 HEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVD 406

Query: 359 KGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +G S+F+   + D   ++P  EHY  +VD+L R+GR  EA+E +  +P  P       LL
Sbjct: 407 EGISHFNS--MSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLL 464

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C+IH N+E  E AA+++L +DP    +YV+LSN    + KW+     R  M E+GM +
Sbjct: 465 GACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRK 524

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            PGCS IE+   VH FV GD +H  + EI  +L     +++
Sbjct: 525 PPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLK 565



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 190/413 (46%), Gaps = 46/413 (11%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ES        VF ++P+    +  +II     ++ ++EA+  +  M++  + P  +TF S
Sbjct: 34  ESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPS 93

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           +  S     + + GKQ+H  +TK+G  S+ +  + ++++Y     +  A +VF+   +  
Sbjct: 94  LFKSC---RNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKT 150

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS+ T                               MIG ++Q  +  EAV LF  M++
Sbjct: 151 VVSWAT-------------------------------MIGVHAQWDQPNEAVRLFDRMMK 179

Query: 234 -EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            E + PN  TL   + A A    L M K  H    +      V +   L+  Y KCG ++
Sbjct: 180 SENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQ 239

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  +FDK  E+N+ +WN +I G+ ++   EEA+  F  M+  GI+ + VT+  LL AC 
Sbjct: 240 LARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACT 299

Query: 353 HTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H G +E G   ++Y  + +++    L       +VD+ ++ G  + A +  +++P +  +
Sbjct: 300 HLGALELGKWLHAYIKKQRIDVDVALG----TALVDMYAKCGSIETAIQVFHEMP-EKDV 354

Query: 410 GFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             W AL+ G  +    E  L  F    I  + P D  ++V +  A S AG  D
Sbjct: 355 MTWTALILGLAMCGQAENALQYFDEMHIKGVKP-DAITFVGVLAACSHAGFVD 406



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 127/260 (48%), Gaps = 12/260 (4%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P   S     C L +    + A  +F ++P+    + N++I G +    ++EA+  + E
Sbjct: 19  DPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQE 78

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+ +GL+P+  T P    +  N +    GK  H  + K     D +  N+L++ Y+ CG 
Sbjct: 79  MMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGC 135

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER-MRINGIRPNGVTLLGLLW 349
           +  +  VFDK+ ++ +V+W  +I  +AQ  +  EA+  F+R M+   ++PN VTL+ +L 
Sbjct: 136 LVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLT 195

Query: 350 ACNHT---GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           AC       +V++ + Y  +       +L       ++D+  + G  + A++ L+D   +
Sbjct: 196 ACARARDLAMVKRIHEYIDEHGFGRHVVLN----TVLMDVYCKCGCVQLARD-LFDKAQE 250

Query: 407 PGIGFWKALLGGCQIHSNVE 426
             +  W  ++ G    SN E
Sbjct: 251 KNLFSWNIMINGHVEDSNYE 270



 Score = 38.9 bits (89), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 29  IETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHH 88
           I+ Q+  V      A+      CGS      +  QVF E+P+ +V++ T +I   A    
Sbjct: 314 IKKQRIDVDVALGTALVDMYAKCGS----IETAIQVFHEMPEKDVMTWTALILGLAMCGQ 369

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG-KQLHAWATKVGLQSNVFVGS 147
            E A+  F  M +  ++P   TF  V+ + +    ++ G    ++ +   G+Q  +    
Sbjct: 370 AENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYG 429

Query: 148 AILDLYIKLSSIEEATRVFE 167
            ++D+  +   I EA  + +
Sbjct: 430 GLVDILGRAGRIAEAEELIK 449


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 252/457 (55%), Gaps = 2/457 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD++ + +VVS +T+I   ++   ++ A+ L   M  + +RPSE    S++       +
Sbjct: 181 VFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTAN 240

Query: 124 LNLGKQLHAWATKVGLQSNVFV--GSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + +GK +HA+  +     ++ V   +A+LD+Y K   +  A ++F       VVS+T MI
Sbjct: 241 MRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMI 300

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G ++  R E+A  LF    +R+V+ W AM+  Y+Q    ++A NLF +M   G+ P   
Sbjct: 301 AGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKV 360

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   +   A   AL +GK  H+   K   ++D  +  +L+  YAKCG +  +  +F + 
Sbjct: 361 TIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEA 420

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             R+I  WNA+I G+A +G GEEA++ F  M   G++PN +T +GLL AC+H GLV +G 
Sbjct: 421 ISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGK 480

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F +       + + EHY CMVDLL R+G   EA E +  +P  P    W AL+  C++
Sbjct: 481 KLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRL 540

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N +LGE AA ++L ++PE+    V++SN  + A +W + + +R+ MK  GM + PG S
Sbjct: 541 HKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHS 600

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            IE+   VH F+ GD++H     I  +L     ++ E
Sbjct: 601 VIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNE 637



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 189/418 (45%), Gaps = 77/418 (18%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I  + K++    A+ +++++  ++     F   SV+ +   +    LGK++H +  K G
Sbjct: 95  VITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKG 154

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L  +VFVG+A++ +Y + + +E A  VF+     +VVS++TMI  L + + F+ AL+L +
Sbjct: 155 LDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIR 214

Query: 199 EMPHRNV-VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
           EM    V  S  AM+            VNLF                      A+ A + 
Sbjct: 215 EMNFMQVRPSEVAMVS----------MVNLF----------------------ADTANMR 242

Query: 258 MGKSFHACAVKFLGK--LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           MGK+ HA  ++      + V    +L+  YAKCG +  +  +F+ LT++ +V+W A+I G
Sbjct: 243 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 302

Query: 316 -------------------------------YAQNGRGEEAIEFFERMRINGIRPNGVTL 344
                                          YAQ    ++A   F++MR +G+RP  VT+
Sbjct: 303 CIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTI 362

Query: 345 LGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
           + LL  C   G ++ G   +SY  + ++E   +L       +VD+ ++ G    A     
Sbjct: 363 VSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILN----TALVDMYAKCGDINAAGRLFI 418

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           +      I  W A++ G  +H   E  L  FA      + P D+ +++ L +A S AG
Sbjct: 419 E-AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDI-TFIGLLHACSHAG 474



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 144/311 (46%), Gaps = 12/311 (3%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKL-FQEMPH--RNVVSWNAMIGGYSQTGRNEEAVN 226
           H+ + +  T  I   + +  F  AL++   + P        WN +I  Y++  +   A+N
Sbjct: 51  HDLSTLEQTKQIHAHIIKTHFHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALN 110

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           ++ ++ +     ++   P  + A   ++   +GK  H   +K     DVFVGN+L+  Y 
Sbjct: 111 VYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYG 170

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           +C  +E + LVFDK+ ER++V+W+ +I   ++N   + A+E    M    +RP+ V ++ 
Sbjct: 171 ECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVS 230

Query: 347 L--LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +  L+A      + K    +      +  M  P   A ++D+ ++ G    A++    L 
Sbjct: 231 MVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTA-LLDMYAKCGHLGLARQLFNGLT 289

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRIL-ALDPEDVSSYVMLSNALSVAGKWDNVS 463
               +  W A++ GC I SN  L E  AR +  +    DV  +  + +A + A   D   
Sbjct: 290 QKTVVS-WTAMIAGC-IRSN-RLEE--ARALFDSTQNRDVMIWTAMLSAYAQANCIDQAF 344

Query: 464 NIRREMKEKGM 474
           N+  +M+  G+
Sbjct: 345 NLFDQMRTSGV 355



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 97/198 (48%), Gaps = 5/198 (2%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S++      +FD   + +V+  T ++  +A+ +  ++A  LF +M    +RP++ T  S+
Sbjct: 306 SNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSL 365

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +        L+LGK +H++  K  ++ +  + +A++D+Y K   I  A R+F +  + ++
Sbjct: 366 LSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI 425

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIE 230
             +  +I G       E+AL +F EM  + V    +++  ++   S  G   E   LF +
Sbjct: 426 CMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEK 485

Query: 231 MLRE-GLVPNHSTLPCAI 247
           M+   GLVP      C +
Sbjct: 486 MVHTFGLVPQIEHYGCMV 503


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 252/447 (56%), Gaps = 31/447 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFDE+ + NV++ T II   ++   YE+++ LF +M    I P+  T+ S + + + L+
Sbjct: 44  QVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQ 103

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G+Q+H    K+G+QSN+ + SA++DLY K  S+E+A RVFE               
Sbjct: 104 ALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRVFES-------------- 149

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                     A++L       + VS   ++ G++Q G  EEA+  F++M+  G   + + 
Sbjct: 150 ----------AVEL-------DEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNM 192

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A     +LG+GK  H+  +K     + FVGN LI+ Y+KCG +++S+ VF+ LT
Sbjct: 193 VSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLT 252

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            RN V+WN++I  +A++G G  A+  +E M   G  P  +T L LL AC+H GLV+KG  
Sbjct: 253 CRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMK 312

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +            + EHYAC+VD+L R+G   EAK  +  L   P +  W+ALLG C I 
Sbjct: 313 FLKSMTKVYGISPRAEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIR 372

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            + E+G++AA ++L L+P+  + YV+L+N  S  G+WD  +   + MKE G+ +  G SW
Sbjct: 373 GDTEIGKYAAEQLLLLEPKKPAPYVLLANIYSSKGRWDERARTIKRMKEMGVAKETGISW 432

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           IEI+ KVH FV  D+ H   + IY VL
Sbjct: 433 IEIEKKVHSFVVEDKKHPQAEIIYGVL 459



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 116/203 (57%), Gaps = 6/203 (2%)

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
           +Y K     +A +VF+D    + VS+ TM+ G L+    +   ++F EM  RNV++W A+
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAI 60

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           I G SQ    E+++ LF++M R GL+ PN  T   ++ A + + AL  G+  H    K  
Sbjct: 61  ISGLSQNEMYEDSLGLFVQM-RCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLG 119

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            + ++ + ++L+  Y+KCGS+ED+  VF+   E + V+   ++ G+ QNG  EEAIEFF 
Sbjct: 120 IQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFV 179

Query: 331 RMRING--IRPNGVTLLGLLWAC 351
           +M   G  + PN V+   +L AC
Sbjct: 180 KMVNIGTEVDPNMVS--AVLGAC 200



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 137/345 (39%), Gaps = 70/345 (20%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D      +VF+   +L+ VS T I+  F +    EEAI  F +M+ +        
Sbjct: 137 CGSLED----ARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNM 192

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             +V+ +      L LGKQ+H+   K  L SN FVG+ ++++Y K   ++E+ +VF    
Sbjct: 193 VSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLT 252

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             N VS+ +MI                                 +++ G    A+ L+ E
Sbjct: 253 CRNSVSWNSMI-------------------------------AAFARHGDGFRALRLYEE 281

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M++EG VP   T    + A +++  +  G       +KFL         S+   Y     
Sbjct: 282 MIQEGAVPTDLTFLSLLHACSHVGLVDKG-------MKFL--------KSMTKVYGISPR 326

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            E    V D L                + G   EA    ER+    I+P+ +    LL A
Sbjct: 327 AEHYACVVDML---------------GRAGLLNEAKSLIERL---SIKPDVLIWQALLGA 368

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
           C+  G  E G     Q  L +P   KP  Y  + ++ S  GR+ E
Sbjct: 369 CSIRGDTEIGKYAAEQLLLLEPK--KPAPYVLLANIYSSKGRWDE 411


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 254/460 (55%), Gaps = 32/460 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+++   NVVS  ++I  ++ +   +  I LF RM    IRP+  T  S++ + +   
Sbjct: 455 EVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSV 514

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +L LGK +H +  +  +++++FV S+++DLY K  +I  A  VF                
Sbjct: 515 NLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF---------------- 558

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                          Q MP  NVVSWN MI GY + G   EA+ +F +M + G+ P+  T
Sbjct: 559 ---------------QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 603

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A + +A L  GK  H   ++   +++  V  +L+  YAKCG+++++L +F++L 
Sbjct: 604 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 663

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER+ V+W ++I  Y  +G+  EA++ FE+M+ +  +P+ VT L +L AC+H GLV++G  
Sbjct: 664 ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCY 723

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALLGGCQI 421
           YF+Q   E       EHY+C++DLL R GR +EA E L   P     +G    L   C +
Sbjct: 724 YFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHL 783

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H  ++LGE   R ++  DP+D S+Y++LSN  +   KWD V  +R ++KE G+ + PGCS
Sbjct: 784 HKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCS 843

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
           WIE+  ++H FV  D++H   D IY  +      + ++++
Sbjct: 844 WIEVGKRIHPFVVEDKSHPQADMIYECMSILASHVEKYQV 883



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/422 (27%), Positives = 197/422 (46%), Gaps = 42/422 (9%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + + +V   ++ + F    ++FDE+P+ +V S   +I  + +    E+A+ LF  M +  
Sbjct: 335 VMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSG 394

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            +P   T  +VI S   L DL  GK++H    + G   + FV SA++D+Y K   +E A 
Sbjct: 395 FKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAK 454

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            VFE     NVVS+ +M                               I GYS  G ++ 
Sbjct: 455 EVFEQIQRKNVVSWNSM-------------------------------IAGYSLKGDSKS 483

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
            + LF  M  EG+ P  +TL   ++A +    L +GK  H   ++   + D+FV +SLI 
Sbjct: 484 CIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLID 543

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG++  +  VF  + + N+V+WN +I GY + G   EA+  F  MR  G++P+ +T
Sbjct: 544 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 603

Query: 344 LLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
              +L AC+   ++EKG   +++  ++KLE    +       ++D+ ++ G   EA    
Sbjct: 604 FTSVLPACSQLAVLEKGKEIHNFIIESKLE----INEVVMGALLDMYAKCGAVDEALHIF 659

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
             LP    +  W +++     H      L  F   +     P+ V+   +LS A S AG 
Sbjct: 660 NQLPERDFVS-WTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILS-ACSHAGL 717

Query: 459 WD 460
            D
Sbjct: 718 VD 719



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 199/422 (47%), Gaps = 45/422 (10%)

Query: 58  FSSVHQVFDEVPD-LNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEFTFGSVI 115
           F S   VF  + + L++     ++    K   + E + +F R+L    ++P  FT+ SV+
Sbjct: 246 FQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVL 305

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            + + L  +  GK +H    K G   +V V S+ + +Y K                    
Sbjct: 306 KACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAK-------------------- 345

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                 C +     FEDA+KLF EMP R+V SWN +I  Y Q G+ E+A+ LF EM   G
Sbjct: 346 ------CNV-----FEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSG 394

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
             P+  TL   I + A +  L  GK  H   V+    LD FV ++L+  Y KCG +E + 
Sbjct: 395 FKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAK 454

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VF+++  +N+V+WN++I GY+  G  +  IE F RM   GIRP   TL  +L AC+ + 
Sbjct: 455 EVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSV 514

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            ++ G   + Y  + ++E    +     + ++DL  + G    A+    ++P    +  W
Sbjct: 515 NLQLGKFIHGYIIRNRVEADIFVN----SSLIDLYFKCGNIGSAENVFQNMP-KTNVVSW 569

Query: 413 KALLGG-CQIHSNVE-LGEFAARRILALDPEDV--SSYVMLSNALSVAGKWDNVSNIRRE 468
             ++ G  ++ S +E L  F   R   + P+ +  +S +   + L+V  K   + N   E
Sbjct: 570 NVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 629

Query: 469 MK 470
            K
Sbjct: 630 SK 631



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 157/334 (47%), Gaps = 42/334 (12%)

Query: 87  HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
           +HY E   ++ R+L  N   +  T GS      ALE+L LGK +H     +GLQ+N+ + 
Sbjct: 181 NHYTEGEGIWYRVLARNRCLARVTAGS------ALEEL-LGKLIHQKIVSLGLQNNITLC 233

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
            ++++LY      + A  VF+   NP                               ++ 
Sbjct: 234 KSLINLYFSCHLFQSAKLVFQTIENP------------------------------LDIT 263

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
            WN ++   ++     E + +F  +L    L P+  T P  + A + +  +G GK  H  
Sbjct: 264 LWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTH 323

Query: 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325
            +K    +DV V +S +  YAKC   ED++ +FD++ ER++ +WN VI  Y Q+G+ E+A
Sbjct: 324 VIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKA 383

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMV 384
           +E FE M+++G +P+ VTL  ++ +C     +E+G       +L   G  L     + +V
Sbjct: 384 LELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEI--HMELVRSGFALDGFVSSALV 441

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           D+  + G  + AKE    +     +  W +++ G
Sbjct: 442 DMYGKCGCLEMAKEVFEQIQ-RKNVVSWNSMIAG 474



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 9/202 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG+      S   VF  +P  NVVS   +I  + K   Y EA+ +F+ M    ++P   T
Sbjct: 548 CGN----IGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 603

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F SV+P+ + L  L  GK++H +  +  L+ N  V  A+LD+Y K  +++EA  +F    
Sbjct: 604 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLP 663

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVN 226
             + VS+T+MI       +  +ALKLF++M   +     V++ A++   S  G  +E   
Sbjct: 664 ERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCY 723

Query: 227 LFIEMLRE-GLVPNHSTLPCAI 247
            F +M+ E G  P      C I
Sbjct: 724 YFNQMIAEYGFKPAVEHYSCLI 745


>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
          Length = 485

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 170/463 (36%), Positives = 259/463 (55%), Gaps = 12/463 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI------P 116
           Q  ++     +VS T+ I   ++     EA+  FS M L  I P+  TF +++      P
Sbjct: 11  QKLNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFP 70

Query: 117 SSTALEDLNLGKQLHAWATKVGLQ-SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
           S +      LG  LH +A K+GL+ S+V VG+AIL +Y K   + +A  VF+   + N V
Sbjct: 71  SGSE----GLGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSV 126

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           ++ TMI G ++  + ++A+ +F +MP R+++SW AMI G+ + G +EEA+  F EM   G
Sbjct: 127 TWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISG 186

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P++  +  A+ A  N+ AL  G   H   +    + +V V NSLI  Y +CG +E + 
Sbjct: 187 VNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFAR 246

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VFDK+ +R +V+WN+VI G+A NG   E++ +F +M+  G  P+GVT  G L AC+H G
Sbjct: 247 QVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVG 306

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           LVE+G+ YF   K +     + EHY C+VDL SR+GR ++A   +  +P  P      +L
Sbjct: 307 LVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGSL 366

Query: 416 LGGCQIHSN-VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           L  C+ H N   L E   + I  LD +  S+YV+LSN  +  GKW+  S +RR+MK  G+
Sbjct: 367 LAACRNHGNHTILAERLMKYITDLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGL 426

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            + PG S IEI    HVF+ GD  H     I  VL   +  +R
Sbjct: 427 KKQPGYSSIEIDDCTHVFMAGDSAHVETAYIREVLELISSDLR 469


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 163/464 (35%), Positives = 263/464 (56%), Gaps = 34/464 (7%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS--EFTFGSV 114
           +     ++FDE+P  +  S    I  +   +   EA+ LF R++  + R S  +FT  S 
Sbjct: 168 RLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELF-RVMQRHERSSSNKFTLSSA 226

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + +S A+  L LGK++H +  +  L  +  V SA+LDLY K  S++EA  +F+       
Sbjct: 227 LAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFD------- 279

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                                   +M  R+VVSW  MI    + GR EE   LF ++++ 
Sbjct: 280 ------------------------QMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQS 315

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ PN  T    + A A+ AA  +GK  H   +        F  ++L+  Y+KCG+   +
Sbjct: 316 GVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVA 375

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VF+++ + ++V+W ++I GYAQNG+ +EA+ FFE +  +G +P+ VT +G+L AC H 
Sbjct: 376 RRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHA 435

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           GLV+KG  YF   K +   M   +HYAC++DLL+RSGRFKEA+  + ++P  P    W +
Sbjct: 436 GLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWAS 495

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLGGC+IH N+EL + AA+ +  ++PE+ ++Y+ L+N  + AG W  V+N+R++M   G+
Sbjct: 496 LLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGI 555

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            + PG SWIEIK +VHVF+ GD +H    +I+  L   +++I+E
Sbjct: 556 VKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKE 599



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 196/395 (49%), Gaps = 13/395 (3%)

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142
             +Q   +EA+ L  R    + RPS   + ++I +      L LG+++HA          
Sbjct: 65  LCQQKRVKEAVELLHRT---DHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPG 121

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
           VF+ + +LD+Y K  S+ +A  +F++  + ++ S+ TMI G  K  R E A KLF EMP 
Sbjct: 122 VFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQ 181

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKS 261
           R+  SWNA I GY    +  EA+ LF  M R E    N  TL  A+ A+A I  L +GK 
Sbjct: 182 RDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKE 241

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            H   ++    LD  V ++L+  Y KCGS++++  +FD++ +R++V+W  +I    ++GR
Sbjct: 242 IHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGR 301

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWAC-NHTG--LVEKGYSYFSQAKLEDPGMLKPE 378
            EE    F  +  +G+RPN  T  G+L AC +H    L ++ + Y   A   DPG     
Sbjct: 302 REEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGY-DPGSFA-- 358

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL-GGCQIHSNVELGEFAARRILA 437
             + +V + S+ G  + A+    ++   P +  W +L+ G  Q     E   F    + +
Sbjct: 359 -ISALVHMYSKCGNTRVARRVFNEM-HQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQS 416

Query: 438 LDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
               D  +YV + +A + AG  D        +KEK
Sbjct: 417 GTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEK 451


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 160/465 (34%), Positives = 258/465 (55%), Gaps = 8/465 (1%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR--PSEFTFGSVIP 116
           S  H VFD  P  ++    TII   A         +   R L+   R  P++++F     
Sbjct: 51  SYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFK 110

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
              +   +  G+Q+   A K+GL++N+FV +A++ +Y+ L  + +A +VF+ + N ++ S
Sbjct: 111 GCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYS 170

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +  M+ G  +  + ++A +LF EMP ++VVSW  MI G  Q G   EA+++F  ML +G+
Sbjct: 171 WNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGM 230

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN  TL  ++ A AN+ AL  G+  H    K   +++  +   LI  YAKCG +E +  
Sbjct: 231 SPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASK 290

Query: 297 VFDK--LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           +F+     +R +  WNA+I G+A +G+ +EAIE FE+M+I  + PN VT + LL AC+H 
Sbjct: 291 LFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHG 350

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
             VE+G  YF    +     +KPE  HY C+VDLL R+GR KEA+E +  +   P +  W
Sbjct: 351 NRVEEGRYYFES--MASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIW 408

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALL  C+IH + E+GE   + +  LDP  +  +V+L+N  S+ G W+    +R ++ E 
Sbjct: 409 GALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAES 468

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           G  + PGCS IE+    H F+ GDR+H    ++Y  L     +++
Sbjct: 469 GKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLK 513



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 123/259 (47%), Gaps = 31/259 (11%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     Q+FDE+P+ +VVS TT+I    +  ++ EA+ +F  ML   + P+E+T  S + 
Sbjct: 183 KMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLA 242

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L+ G+ +H +  K  +Q N  + + ++D+Y K   +E A+++F    NP +  
Sbjct: 243 ACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNS--NPRL-- 298

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                                     R V  WNAMIGG++  G+++EA+ +F +M  E +
Sbjct: 299 -------------------------KRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKV 333

Query: 237 VPNHSTLPCAIIAAANIAALGMGK-SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
            PN  T    + A ++   +  G+  F + A  +  K ++     L+    + G ++++ 
Sbjct: 334 SPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAE 393

Query: 296 LVFDKL-TERNIVTWNAVI 313
            +   +    ++  W A++
Sbjct: 394 EIISSMHLTPDVAIWGALL 412


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 162/474 (34%), Positives = 269/474 (56%), Gaps = 7/474 (1%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+  ++     S  + FDE+P+ +VVS   +   +A++   +EA+ LF +ML   I 
Sbjct: 196 TSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGIT 255

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P + T+   I S +++ D  L   +     +  +  N FV +A+LD++ K  ++E A  +
Sbjct: 256 PDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNI 315

Query: 166 FEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           F++  +  N V++  MI    +  +   A +LF  MP R+VVSWN+MI GY+Q G +  +
Sbjct: 316 FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMS 375

Query: 225 VNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           + LF EM+    + P+  T+   + A  +I AL +         +   KL +   NSLI 
Sbjct: 376 IELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIF 435

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCGS+ D+  +F  +  R++V++N +I G+A NG G+EAI+    M   GI P+ VT
Sbjct: 436 MYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVT 495

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            +G+L AC+H GL+ +G + F    ++ P +   +HYACMVDLL R+G   EAK  +  +
Sbjct: 496 YIGVLTACSHAGLLNEGKNVFKS--IQAPTV---DHYACMVDLLGRAGELDEAKMLIQSM 550

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P  G + +LL   +IH  V LGE AA ++  L+P+++ +YV+LSN  +  G+W++V 
Sbjct: 551 PMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVK 610

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +R  MK+ G+ +  G SW+E K +VH F  GDR+H  + +IY +L     +++
Sbjct: 611 RVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMK 664



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 208/478 (43%), Gaps = 78/478 (16%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
           V  +F   P  +    + ++  +++   + + + LF     LN+RP  F +  +I  +  
Sbjct: 53  VDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG- 111

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP-------- 172
                 G   HA+  K+G   + F+ +AILD+Y K   ++ A  +FE             
Sbjct: 112 ----KSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSM 167

Query: 173 -----------------------NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
                                  N++++T+M+ G  K    E A + F EMP R+VVSWN
Sbjct: 168 ISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWN 227

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
           AM   Y+Q    +EA+NLF +ML EG+ P+ +T    I + ++I    +  S      + 
Sbjct: 228 AMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQK 287

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL---------------------------- 301
              L+ FV  +L+  +AK G++E +  +FD+L                            
Sbjct: 288 HIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLAREL 347

Query: 302 ----TERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGL 356
                +R++V+WN++I GYAQNG    +IE F+ M     I+P+ VT+  +L AC H G 
Sbjct: 348 FDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGA 407

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           ++  Y      + E    L    +  ++ + S+ G   +A      +     + F   L+
Sbjct: 408 LKLSYWVLDIVR-EKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSF-NTLI 465

Query: 417 GGCQIHSNVELGEFAARRILALDPE----DVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            G   + +   G+ A + +L ++ E    D  +Y+ +  A S AG  +   N+ + ++
Sbjct: 466 SGFAANGH---GKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ 520


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 249/456 (54%), Gaps = 32/456 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F E    +VVS T +I    +     EA+  F  M    +   E T  SV+ ++  L 
Sbjct: 159 RLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLR 218

Query: 123 DLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           D+  G+ +H +  + G +  +V+VGSA++D+Y K                          
Sbjct: 219 DVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSK-------------------------- 252

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG       +DA+K+F EMP RN+VSW A+I GY Q  R +EA+ +F EM+ EG+ PN S
Sbjct: 253 CGYC-----DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQS 307

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+  A+ A A + +L  G+  H    +    L+  +G +L+  Y+KCG ++++LLVF+KL
Sbjct: 308 TVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKL 367

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             +++  W A+I G A  G    ++  F +M  + ++PNGVT LG+L AC H GLV++G 
Sbjct: 368 PAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGL 427

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F     +       +HY CMVDLL R+GR +EA +F+  +P +P  G W AL  GC I
Sbjct: 428 ELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMI 487

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H   ELGE     ++ L P     Y++L+N  S   KW+  +N+RR MK KG+ + PGCS
Sbjct: 488 HKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCS 547

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           WIE+   +H F+  D++H  +  +Y +L S + Q++
Sbjct: 548 WIEVNGVIHEFIAFDKSHTESINVYMMLESVSAQLK 583



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
           L LF  +    +  WN +I G+S + + +  +  +  +   G++P+  T P  + A + +
Sbjct: 58  LLLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKL 117

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
                 + F+A  VKF    D FV NSL+S +A CG ++ S  +F +  ++++V+W A+I
Sbjct: 118 RNENPFQ-FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALI 176

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            G  +NGR  EA+E F  MR +G+  + VT++ +L  C    L +  +  +      + G
Sbjct: 177 NGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVL--CAAAMLRDVWFGRWVHGFYVESG 234

Query: 374 MLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            +  + Y  + +VD+ S+ G   +A +   ++P    +  W AL+ G
Sbjct: 235 RVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVS-WGALIAG 280


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 162/474 (34%), Positives = 269/474 (56%), Gaps = 7/474 (1%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+  ++     S  + FDE+P+ +VVS   +   +A++   +EA+ LF +ML   I 
Sbjct: 196 TSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGIT 255

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P + T+   I S +++ D  L   +     +  +  N FV +A+LD++ K  ++E A  +
Sbjct: 256 PDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNI 315

Query: 166 FEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           F++  +  N V++  MI    +  +   A +LF  MP R+VVSWN+MI GY+Q G +  +
Sbjct: 316 FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMS 375

Query: 225 VNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           + LF EM+    + P+  T+   + A  +I AL +         +   KL +   NSLI 
Sbjct: 376 IELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIF 435

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCGS+ D+  +F  +  R++V++N +I G+A NG G+EAI+    M   GI P+ VT
Sbjct: 436 MYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVT 495

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            +G+L AC+H GL+ +G + F    ++ P +   +HYACMVDLL R+G   EAK  +  +
Sbjct: 496 YIGVLTACSHAGLLNEGKNVFKS--IQAPTV---DHYACMVDLLGRAGELDEAKMLIQSM 550

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P  G + +LL   +IH  V LGE AA ++  L+P+++ +YV+LSN  +  G+W++V 
Sbjct: 551 PMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVK 610

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +R  MK+ G+ +  G SW+E K +VH F  GDR+H  + +IY +L     +++
Sbjct: 611 RVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMK 664



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 208/478 (43%), Gaps = 78/478 (16%)

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
           V  +F   P  +    + ++  +++   + + + LF     LN+RP  F +  +I  +  
Sbjct: 53  VDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG- 111

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP-------- 172
                 G   HA+  K+G   + F+ +AILD+Y K   ++ A  +FE             
Sbjct: 112 ----KSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSM 167

Query: 173 -----------------------NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
                                  N++++T+M+ G  K    E A + F EMP R+VVSWN
Sbjct: 168 ISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWN 227

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
           AM   Y+Q    +EA+NLF +ML EG+ P+ +T    I + ++I    +  S      + 
Sbjct: 228 AMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQK 287

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL---------------------------- 301
              L+ FV  +L+  +AK G++E +  +FD+L                            
Sbjct: 288 HIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLAREL 347

Query: 302 ----TERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGL 356
                +R++V+WN++I GYAQNG    +IE F+ M     I+P+ VT+  +L AC H G 
Sbjct: 348 FDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGA 407

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           ++  Y      + E    L    +  ++ + S+ G   +A      +     + F   L+
Sbjct: 408 LKLSYWVLDIVR-EKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSF-NTLI 465

Query: 417 GGCQIHSNVELGEFAARRILALDPE----DVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            G   + +   G+ A + +L ++ E    D  +Y+ +  A S AG  +   N+ + ++
Sbjct: 466 SGFAANGH---GKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ 520


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 159/433 (36%), Positives = 242/433 (55%), Gaps = 36/433 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN---IRPSEFTFGSVIPSSTALEDLNLGK 128
           N V+ + ++G +       EA+ LF ++L+L    I  S  T  +VI     L DL+ G 
Sbjct: 286 NEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGT 345

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
            LH +A K G   ++ VG+ +L +Y K                          CG++   
Sbjct: 346 CLHCYAIKSGFVLDLMVGNTLLSMYAK--------------------------CGIIN-- 377

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
               A++ F EM  R+ VS+ A+I GY Q G +EE + +F+EM   G+ P  +TL   + 
Sbjct: 378 ---GAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLP 434

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A A++A L  G   H  A+      D  + N+LI  YAKCG ++ +  VFD++ +R IV+
Sbjct: 435 ACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVS 494

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           WN +I  Y  +G G EA+  F+ M+  G++P+ VT + L+ AC+H+GLV +G  +F+ A 
Sbjct: 495 WNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFN-AM 553

Query: 369 LEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
            +D G++ + EHYACMVDLLSR+G FKE   F+  +P +P +  W ALL  C+++ NVEL
Sbjct: 554 TQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVEL 613

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
           GE  +++I  L PE   ++V+LSN  S  G+WD+ + +R   KE+G  + PGCSWIEI  
Sbjct: 614 GEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISG 673

Query: 488 KVHVFVTGDRNHH 500
            VH F+ G    H
Sbjct: 674 VVHTFLGGGYRSH 686



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 210/463 (45%), Gaps = 51/463 (11%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           CI   SL   KL   H L    L  T + ++   + P  +   +       K +    VF
Sbjct: 19  CIQSKSLFRGKLIHQHLL--KCLHRTHETNLTNFDVPFEKLVDLYIACSELKIA--RHVF 74

Query: 66  DEVPDL--NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           D++P    NVV    +I  +A    YEEAI L+ +ML   I P+ FTF  V+ + +AL++
Sbjct: 75  DKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKE 134

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            + G+++H    ++ L+SNV+V +A++D Y K   +++A  VF+  H  +VV+       
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVA------- 187

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS-QTGRNEEAVNLFIEMLREGLVPNHST 242
                                   WN+MI G+S   G  +E   L ++M +  + PN ST
Sbjct: 188 ------------------------WNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSST 222

Query: 243 LPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           +   + A A + +L  GK  H   V+  F+G  DV VG  ++  Y KC  ++ +  +FD 
Sbjct: 223 IVGVLPAVAQVNSLRHGKEIHGFCVRRGFVG--DVVVGTGILDVYGKCQCIDYARRIFDM 280

Query: 301 L-TERNIVTWNAVICGYAQNGRGEEAIEFFER---MRINGIRPNGVTLLGLLWACNHTGL 356
           +   +N VTW+A++  Y       EA+E F +   ++ + I  + VTL  ++  C +   
Sbjct: 281 MGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTD 340

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +  G      A ++   +L       ++ + ++ G    A  F  ++     + F  A++
Sbjct: 341 LSTGTCLHCYA-IKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSF-TAII 398

Query: 417 GGCQIHSNVELG--EFAARRILALDPEDVSSYVMLSNALSVAG 457
            G   + N E G   F   ++  ++PE  +   +L     +AG
Sbjct: 399 SGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAG 441



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 95/230 (41%), Gaps = 47/230 (20%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           + F+E+   + VS T II  + +  + EE + +F  M L  I P + T  SV+P+   L 
Sbjct: 381 RFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLA 440

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L+ G   H +A   G  ++  + +A++D+Y K   I+ A +VF+  H   +V       
Sbjct: 441 GLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIV------- 493

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                   SWN MI  Y   G   EA+ LF  M  EGL P+  T
Sbjct: 494 ------------------------SWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVT 529

Query: 243 LPCAIIAAANIAALGMGKSF----------------HACAVKFLGKLDVF 276
             C I A ++   +  GK +                +AC V  L +  +F
Sbjct: 530 FICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLF 579


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 266/475 (56%), Gaps = 4/475 (0%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           AI    V+CG      +S  +VFD++ +  +VS  ++I  ++K    EEA+ +F  M  +
Sbjct: 174 AILNIYVACG----LITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEV 229

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P  FT   ++  ST   + +LG+ +H      G++ +  V +A++D+Y K  +++ A
Sbjct: 230 GLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCA 289

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF+   + +VVS+T MI         + AL+ F +MP +NVVSWN++I  + Q G   
Sbjct: 290 KSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYA 349

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EAV+LF  M   G++ N +TL   + + +++  L +GK  H+        L   + N++I
Sbjct: 350 EAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAII 409

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKCG+++ ++ VF  + E+N V+WN +I   A +G G+EAIE FE+M+ +G+ P+ +
Sbjct: 410 DMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEI 469

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T  GLL AC+H+GLV+ G  YF    L        EHYACMVDLL R G   EA   +  
Sbjct: 470 TFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKK 529

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P  P +  W ALLG C+ + N+ +G+   +++L L   +   YV+LSN  S + +WD++
Sbjct: 530 MPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDM 589

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            NI + + + G+ +    S+IEI    + F+  D+ H  +  IY++L    + ++
Sbjct: 590 KNIWKILDQNGIKKCRAISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQLMDHLK 644



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 202/418 (48%), Gaps = 25/418 (5%)

Query: 12  LSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           +SL +L  +H+    + + TQ  ++ KL + +++   +            H++FD++P  
Sbjct: 47  ISLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLR---------YAHKLFDQIPQP 97

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N      +I  ++      +++ L+ RM+   I P++FT   V+ +  A     LG  +H
Sbjct: 98  NKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVH 157

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A + K+G+ S+  V +AIL++Y+    I  A RVF+D     +VS+ +MI G  K  R E
Sbjct: 158 AQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSE 217

Query: 192 DALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
           +A+ +F+EM       +V +   ++   ++ G  +    + + M+  G+  +       +
Sbjct: 218 EAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALM 277

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
              A    L   KS      + L K DV     +I+ YA  G ++ +L  F+++  +N+V
Sbjct: 278 DMYAKCGNLKCAKSVFD---QMLDK-DVVSWTCMINAYANHGLIDCALEFFNQMPGKNVV 333

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYSYF 364
           +WN++I  + Q G   EA++ F RM  +G+  N  TL+ +L +C+H G   L ++ +SY 
Sbjct: 334 SWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYI 393

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
                ++   L       ++D+ ++ G  + A +  + +P    +  W  ++G   +H
Sbjct: 394 ----FDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVS-WNVIIGALALH 446



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 4/235 (1%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A KLF ++P  N   +N +I GYS +    +++ L+  M+ +G++PN  T+P  + A A 
Sbjct: 87  AHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAA 146

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
            +   +G   HA + K        V N++++ Y  CG +  +  VFD ++ER +V+WN++
Sbjct: 147 KSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSM 206

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           I GY++ GR EEA+  F  M+  G+ P+  TL+GLL      G  + G   F    +   
Sbjct: 207 INGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLG--RFVHLHMVVT 264

Query: 373 GM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           G+ +       ++D+ ++ G  K AK  ++D   D  +  W  ++     H  ++
Sbjct: 265 GIEIDSIVTNALMDMYAKCGNLKCAKS-VFDQMLDKDVVSWTCMINAYANHGLID 318


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 165/460 (35%), Positives = 252/460 (54%), Gaps = 4/460 (0%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           S GS  D      + FDE+ D NVVS  ++IG +A+     E   LF  M        EF
Sbjct: 159 SAGSLGDS----RRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEF 214

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T  S++ + +   +L +G+ +H      G + ++ + SA++D+Y K   +  A R FE  
Sbjct: 215 TLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMM 274

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              +VVS+T+M+C   K      A   F  MP RN+VSWNAMI  Y Q G+  EA++L+ 
Sbjct: 275 PIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYN 334

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M  +GL P+  TL   + A+  I  L +GK  H      +   DV + NSL+  YAKCG
Sbjct: 335 QMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCG 394

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++ ++ +F ++  RN+V+WN +I G A +GR  + I FF  M  +   P+G+T + LL 
Sbjct: 395 QVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLS 454

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           AC+H GL+E G  YF   +       + EHYACMVDLL R G  ++A   + ++P  P +
Sbjct: 455 ACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDV 514

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W ALLG C+IH NV++G    +++L L+      +V++SN L    +W+++  +R+ M
Sbjct: 515 VVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLFVLISNLLYETHQWEDMKRLRKLM 574

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           KE G  +  G S IEI + +H F   D  H  + EIYAV+
Sbjct: 575 KEWGTRKDMGVSSIEINNSIHEFGVEDIRHERSSEIYAVV 614



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 173/393 (44%), Gaps = 68/393 (17%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD +P  + V   TII  +       EA+ L   ML   I P+EFT   V+ + T  +
Sbjct: 67  RLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQ 126

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
                  +H  A ++GL   VFVG+A+L  Y    S+ ++ R F++  + NVVS+ +M  
Sbjct: 127 AREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM-- 184

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                        IGGY+Q G   E  +LF EM R+G + +  T
Sbjct: 185 -----------------------------IGGYAQAGDTREVCSLFGEMRRQGFLEDEFT 215

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC-------------- 288
           L   +IA +    L +G+  H   +    ++D+ + ++L+  Y KC              
Sbjct: 216 LVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMP 275

Query: 289 -----------------GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
                            GS+  +   FD + ERNIV+WNA+I  Y Q G+  EA++ + +
Sbjct: 276 IKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQ 335

Query: 332 MRINGIRPNGVTLLGLLWACNHTG--LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
           M+  G+ P+ +TL+ +L A    G   V K    + +  + +P +        ++D+ ++
Sbjct: 336 MQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDV---SLVNSLLDMYAK 392

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            G+   A     ++  +  +  W  ++GG  +H
Sbjct: 393 CGQVDTAISLFSEM-CNRNVVSWNVIIGGLAMH 424



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 133/284 (46%), Gaps = 7/284 (2%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A +LF  +P  + V +N +I  Y  +    EA+ L   MLR G++PN  TLP  + A   
Sbjct: 65  ARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTI 124

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
             A     + H  A++      VFVGN+L+  YA  GS+ DS   FD++ +RN+V+WN++
Sbjct: 125 AQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 184

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           I GYAQ G   E    F  MR  G   +  TL+ LL AC+  G +E G     +  L   
Sbjct: 185 IGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRM-LVSG 243

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
             +     + +VD+  + G    A+     +P    +  W ++L     H +V     AA
Sbjct: 244 SRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVS-WTSMLCAQTKHGSVN----AA 298

Query: 433 RRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           R      PE ++ S+  + +     G+     ++  +M+ +G+ 
Sbjct: 299 RCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLA 342


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 258/467 (55%), Gaps = 33/467 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D  + V ++F+E+P+L+ VS   II  +A     +E+I LF  +         F F 
Sbjct: 287 SKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFP 346

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  + +  DL +G+QLHA         +  V ++++D+Y K                 
Sbjct: 347 TMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAK----------------- 389

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG     +FE+A ++F  +  R+ V W AMI    Q G +E  + LF EM 
Sbjct: 390 ---------CG-----KFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMR 435

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R  +  + +T  C + A+AN+A++ +GK  H+C ++  G ++V+ G +L+  YA C S++
Sbjct: 436 RANVSADQATFACVLKASANLASILLGKQLHSCVIR-SGFMNVYSGCALLDMYANCASIK 494

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D++  F++++ERN+VTWNA++  YAQNG G+  ++ FE M ++G +P+ V+ L +L AC+
Sbjct: 495 DAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACS 554

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H  LVE+G  YF+          K EHY  MVD L RSGRF EA++ +  +PF+P    W
Sbjct: 555 HCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVW 614

Query: 413 KALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
            ++L  C+IH N  L   AA ++  +    D + YV +SN  + AG+WD+V  +++ M++
Sbjct: 615 TSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRD 674

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +G+ ++P  SW+EIK KVHVF   D  H    EI   +    EQ+ +
Sbjct: 675 RGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLAEQMEK 721



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 171/380 (45%), Gaps = 48/380 (12%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S   +   ++FD+  +  VV+ TT+IG ++K + + +A  LF+ M     +P   T+ +
Sbjct: 86  KSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYIT 145

Query: 114 VIPSSTALEDLNLGKQL---HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           ++   T   DL + K+L   HA   K+G   N  V + +LD Y K   ++ A R      
Sbjct: 146 LL---TGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARR------ 196

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                    LF EM   + VS+N MI GY+  G NEEA+ LF+E
Sbjct: 197 -------------------------LFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVE 231

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   G  P+  T    I A+  +     G+  H   VK     +VFVGN+ + FY+K   
Sbjct: 232 MQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDC 291

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + +   +F+++ E + V++N +I  YA  G+ +E+I+ F+ ++             +L  
Sbjct: 292 VNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSI 351

Query: 351 CNHTGLVEKGYSYFSQ--AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
              +  ++ G    +Q    + DP          +VD+ ++ G+F+EA      L     
Sbjct: 352 AASSLDLQMGRQLHAQVVVSMADPDFRVSN---SLVDMYAKCGKFEEADRIFLRLSSRST 408

Query: 409 IGFWKALLGGCQIHSNVELG 428
           +  W A+     I +NV+ G
Sbjct: 409 VP-WTAM-----ISANVQRG 422


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 165/509 (32%), Positives = 286/509 (56%), Gaps = 11/509 (2%)

Query: 12  LSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           ++LN++ ++H       ++     + KL    IRT +   G   D ++   +V + V   
Sbjct: 60  INLNQIKQIHGHVLRKGLDQSCYILTKL----IRTLT-KLGVPMDPYA--RRVIEPVQFR 112

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N    T +I  +A +  ++EAI ++  M    I P  FTF +++ +   ++DLNLG+Q H
Sbjct: 113 NPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFH 172

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   ++     V+VG+ ++D+Y+K  SI+ A +VF++    +V+S+T +I    +    E
Sbjct: 173 AQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNME 232

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
            A +LF+ +P +++V+W AM+ G++Q  + +EA+  F  M + G+  +  T+   I A A
Sbjct: 233 CAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACA 292

Query: 252 NIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            + A          A K  +     V +G++LI  Y+KCG++E+++ VF  +  +N+ T+
Sbjct: 293 QLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTY 352

Query: 310 NAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           +++I G A +GR +EA+  F  M     I+PN VT +G L AC+H+GLV++G   F    
Sbjct: 353 SSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMY 412

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
                    +HY CMVDLL R+GR +EA E +  +  +P  G W ALLG C+IH+N E+ 
Sbjct: 413 QTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIA 472

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS- 487
           E AA  +  L+P+ + +Y++LSN  + AG W  V  +R+ +KEKG+ + P  SW+  K+ 
Sbjct: 473 EIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNG 532

Query: 488 KVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           ++H F  G+ NH M+++I   L    E++
Sbjct: 533 QMHKFFPGNLNHPMSNKIQDKLEELVERL 561


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 157/445 (35%), Positives = 255/445 (57%), Gaps = 17/445 (3%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS--------EFTFGSVI 115
           VF ++P  N+     +I  +A+ H + +A+ ++ RML     PS         FT+  ++
Sbjct: 64  VFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLL 123

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            +  AL    LG+Q+HA   + G +S+  V ++++++Y +   +  A + F+     +VV
Sbjct: 124 KACGALAASRLGRQVHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVV 183

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+ T+I    +  +   A +LF  MP + VVSW A++ GY+  G    AV +F  M  EG
Sbjct: 184 SWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEG 243

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMED 293
             P+  ++   + A A + AL +G+  +A   K   LGK  V++ N+L+  YAKCG +E+
Sbjct: 244 FEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGK--VYICNALMEMYAKCGCIEE 301

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACN 352
           +L +F  ++E+++++W+  I G A +GR  EA+  FE M   G + PNG+T +GLL AC+
Sbjct: 302 ALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACS 361

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLV++G  Y  Q K ED G ++P  EHY C+VDLL RSGR + A + +  +P  P   
Sbjct: 362 HAGLVDEGLRYLDQMK-EDYG-VEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGK 419

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W +LL  C+ H +VE    AA R++ L+P DV + VML+N    AG+W  V++ R+E++
Sbjct: 420 IWGSLLSACRSHGDVETAVVAAERLVELEPGDVGNLVMLANVYGAAGRWGEVASTRKEIR 479

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTG 495
            +   + PGCS IE+ + V  FV G
Sbjct: 480 SRSTRKTPGCSMIEVDNVVREFVAG 504


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 262/472 (55%), Gaps = 9/472 (1%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D      Q+FD +P  + V+  +++      +    A+ +   +L     P  F 
Sbjct: 51  CGLIQDAL----QLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFV 106

Query: 111 FGSVIPSSTALEDLNL--GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           F S++ +   L  L++  GKQ+HA         +  V S+++D+Y K    +    VF+ 
Sbjct: 107 FASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDS 166

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
             + N +S+TTMI G  +  R  +A +LF++ P+RN+ +W A+I G  Q+G   +A +LF
Sbjct: 167 ISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLF 226

Query: 229 IEMLREGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           +EM  EG+ V +   L   + A AN+A   +GK  H   +    +  +F+ N+LI  YAK
Sbjct: 227 VEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAK 286

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           C  +  +  +F ++  +++V+W ++I G AQ+G+ EEA+  ++ M + G++PN VT +GL
Sbjct: 287 CSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGL 346

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           + AC+H GLV KG + F +  +ED G+    +HY C++DL SRSG   EA+  +  +P +
Sbjct: 347 IHACSHAGLVSKGRTLF-RTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVN 405

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W ALL  C+ H N ++    A  +L L PED SSY++LSN  + AG W++VS +R
Sbjct: 406 PDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVR 465

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + M      + PG S I++    HVF  G+ +H M DEI  ++R   E++R+
Sbjct: 466 KLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRK 517



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 42/245 (17%)

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           S A +   L K+LHA   K GL  +  + + +L+ Y K                      
Sbjct: 13  SAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGK---------------------- 50

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               CGL+     +DAL+LF  +P R+ V+W +++   + + R   A+++   +L  G  
Sbjct: 51  ----CGLI-----QDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFH 101

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSL 295
           P+H      + A AN+  L + +     A  FL     D  V +SLI  YAK G  +   
Sbjct: 102 PDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGR 161

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VFD ++  N ++W  +I GYA++GR  EA   F +     +           W    +G
Sbjct: 162 AVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNL---------FAWTALISG 212

Query: 356 LVEKG 360
           LV+ G
Sbjct: 213 LVQSG 217



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 34/209 (16%)

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           +L   + +AA  + L + K  HA  +K        + N+L++ Y KCG ++D+L +FD L
Sbjct: 6   SLQSQLCSAARQSPL-LAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDAL 64

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL--VEK 359
             R+ V W +++     + R   A+     +   G  P+      L+ AC + G+  V++
Sbjct: 65  PRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQ 124

Query: 360 G---YSYFSQAKLEDPGMLK------------PEH---------------YACMVDLLSR 389
           G   ++ F  +   D  ++K            P++               +  M+   +R
Sbjct: 125 GKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYAR 184

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           SGR  EA       P+   +  W AL+ G
Sbjct: 185 SGRKFEAFRLFRQTPYR-NLFAWTALISG 212


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 263/448 (58%), Gaps = 36/448 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVV+ T +IG F + ++ E+A+ LF +M    +RP+ FT+ +V+    +    +L  QLH
Sbjct: 372 NVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPS----SLLSQLH 427

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   +    V +A+LD Y+K  ++ E+ RVF                         
Sbjct: 428 AQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF------------------------- 462

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
                   +P +++V+W+AM+ G +QT  +E+A+ +FI++++EG+ PN  T    I A +
Sbjct: 463 ------YSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACS 516

Query: 252 NIAA-LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           + AA +  GK  HA AVK      + V ++L++ Y+K G++E +  VF +  ER+IV+WN
Sbjct: 517 SSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWN 576

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I GY Q+G  ++A+E F+ M+  G+  + VT +G+L AC H GLVE+G  YF+    +
Sbjct: 577 SMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKD 636

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
                K EHY+CMVDL SR+G F +A + +  +PF      W+ LL  C++H N+ELG+ 
Sbjct: 637 YHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKL 696

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
           AA ++++L P D   YV+LSN  +VAG W+  +++R+ M E+ + +  GCSWIEIK+++ 
Sbjct: 697 AAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIF 756

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            F+ GD +H  +D +YA L   + ++++
Sbjct: 757 SFLAGDVSHPFSDLVYAKLEELSIKLKD 784



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 147/313 (46%), Gaps = 42/313 (13%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           HQ+FDE P  ++     ++  F++ +H  EA++LF  +    +     T    +     L
Sbjct: 58  HQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVL 117

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D  +G+Q+H  + K G   +V VG++++D+Y                            
Sbjct: 118 FDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMY---------------------------- 149

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
              +K E FED   +F EM  +NVVSW +++ GY++ G N+E ++L  +M  EG+ PN  
Sbjct: 150 ---MKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGF 206

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A A+ + +  G   HA  VK   +   FV N+LI  Y K   + D+  VFD +
Sbjct: 207 TFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSM 266

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN--------- 352
             R+ VTWN +I GYA  G   E  + F RMR+ G++ +       L  C+         
Sbjct: 267 VVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTK 326

Query: 353 --HTGLVEKGYSY 363
             H G+V+ GY +
Sbjct: 327 QLHCGVVKNGYEF 339



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 171/381 (44%), Gaps = 38/381 (9%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           LE  ++ T  V    +++ F     +FDE+   NVVS T+++  +A+    +E I+L ++
Sbjct: 136 LEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQ 195

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M +  + P+ FTF +V+ +      +  G Q+HA   K G +   FV +A++ +Y+K   
Sbjct: 196 MQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLK--- 252

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
                                        E   DA  +F  M  R+ V+WN MIGGY+  
Sbjct: 253 ----------------------------SEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAI 284

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G   E   +F  M   G+  + +    A+   +    L   K  H   VK   +    + 
Sbjct: 285 GFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR 344

Query: 279 NSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            +L+  Y+KC S++++  +F       N+VTW A+I G+ QN   E+A++ F +M   G+
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGV 404

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           RPN  T   +L A   + L+ + ++   +A  E      P     ++D   ++G   E+ 
Sbjct: 405 RPNHFTYSTVL-AGKPSSLLSQLHAQIIKAYYEKV----PSVATALLDAYVKTGNVVESA 459

Query: 398 EFLYDLPFDPGIGFWKALLGG 418
              Y +P    I  W A+L G
Sbjct: 460 RVFYSIP-AKDIVAWSAMLTG 479



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 2/177 (1%)

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           L  R R+  A +LF E P +++  +N ++  +S+   + EA++LF ++   GL  +  TL
Sbjct: 50  LPSRPRY--AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTL 107

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
            CA+     +    +G+  H  ++K     DV VG SL+  Y K    ED   +FD++  
Sbjct: 108 SCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGI 167

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +N+V+W +++ GYA+NG  +E I    +M++ G+ PNG T   +L A     ++E G
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 125/244 (51%), Gaps = 11/244 (4%)

Query: 2   IQLLC-ICRSSLSLNKLSKLHSLA--PNYLIETQKASVQKL---ETPAIRTDSVSCGSES 55
           + L C + R  +  N  +    LA  P+ L+    A + K    + P++ T  +    ++
Sbjct: 393 VDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKT 452

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
                  +VF  +P  ++V+ + ++   A+    E+A+ +F +++   ++P+E+TF SVI
Sbjct: 453 GNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVI 512

Query: 116 PS-STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
            + S++   +  GKQ+HA A K G  + + V SA+L +Y K  +IE A +VF      ++
Sbjct: 513 NACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDI 572

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIE 230
           VS+ +MI G  +    + AL++FQ M ++ +    V++  ++   +  G  EE    F  
Sbjct: 573 VSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNI 632

Query: 231 MLRE 234
           M+++
Sbjct: 633 MIKD 636


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 174/510 (34%), Positives = 280/510 (54%), Gaps = 56/510 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +P+ N VS  TII  +A +    EA  LF  M        +F + SV+ + T  +
Sbjct: 169 KVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPD 228

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            ++ GKQ+H  A K GL S   VG+A++ +Y K   +++A + FE + + + ++++ MI 
Sbjct: 229 LVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMIT 288

Query: 183 GLLKRERFEDALKLFQEMPHRN-----VVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-- 235
           G  +     +AL LF  M H N       ++  +I   S  G  EE   +    L+ G  
Sbjct: 289 GYAQAGDSHEALNLFYNM-HLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYE 347

Query: 236 ----------------------------------------------LVPNHSTLPCAIIA 249
                                                         ++P+  T+   + A
Sbjct: 348 CQIYFRKGFDYLKAKCGSLVDARKGFDYLKEPDIVLWTSCRMQMERIMPHELTMASVLRA 407

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            +++AAL  GK  HA  +K+   L+V +G++L + YAKCGS+ED  LVF ++  R+I+TW
Sbjct: 408 CSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTW 467

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           NA+I G +QNG G +A+E FE +R    +P+ VT + +L AC+H GLVE+G  YF +  L
Sbjct: 468 NAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYF-RMML 526

Query: 370 EDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
           ++ G++ + EHYACMVD+LSR+G+  E KEF+     D G+  W+ LLG C+ + N ELG
Sbjct: 527 DEFGIIPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELG 586

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
            +A  +++ L  ++ S+Y++LS+  +  G+ D+V  +RR MK +G+ + PGCSWIE+KS+
Sbjct: 587 AYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQ 646

Query: 489 VHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           VHVFV GD+ H    +I + LR   + +++
Sbjct: 647 VHVFVVGDQIHPQIVKICSELRRLRDHMKD 676



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 168/362 (46%), Gaps = 44/362 (12%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + LL  C     L K   +H+     L+ T   S   L T ++      CGS        
Sbjct: 14  VDLLLRCTRQKDLQKGKAIHA----QLLRTGSFSSVYL-TNSLVNLYAKCGS----IVKA 64

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHH--YEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
             VF+ + + +VVS   +I  ++++    Y   + LF RM   N  P+  TF  V  +++
Sbjct: 65  KLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAAS 124

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           +  +   G Q HA A K     +VFVGS+++++Y K+                       
Sbjct: 125 SSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIG---------------------- 162

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             C L       DA K+F  +P RN VSW  +I GY+      EA  LF+ M RE    +
Sbjct: 163 --CML-------DARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLMRREEGAHD 213

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF-VGNSLISFYAKCGSMEDSLLVF 298
                  + A      +  GK  H  A+K  G L +  VGN+L++ Y KCG ++D+   F
Sbjct: 214 KFIYTSVLSALTVPDLVHYGKQIHCLALKN-GLLSIASVGNALVTMYGKCGCLDDAFKTF 272

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           +   +++ +TW+A+I GYAQ G   EA+  F  M +NG +P+  T +G++ AC+  G +E
Sbjct: 273 ELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALE 332

Query: 359 KG 360
           +G
Sbjct: 333 EG 334



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 109/237 (45%), Gaps = 33/237 (13%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M L  + P   +F  ++   T  +DL  GK +HA   + G  S+V++ +++++LY K  S
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           I +A  VFE   N +VVS                               WN +I GYSQ 
Sbjct: 61  IVKAKLVFESITNKDVVS-------------------------------WNCLINGYSQK 89

Query: 219 GR--NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
           G       + LF  M  E  +PN  T      AA++      G   HA A+K     DVF
Sbjct: 90  GTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVF 149

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           VG+SLI+ Y K G M D+  VFD + ERN V+W  +I GYA      EA E F  MR
Sbjct: 150 VGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFLLMR 206



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L P H +    ++       L  GK+ HA  ++      V++ NSL++ YAKCGS+  + 
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEA--IEFFERMRINGIRPNGVTLLGLLWA 350
           LVF+ +T +++V+WN +I GY+Q G    +  +E F+RMR     PNG T  G+  A
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTA 122


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 261/456 (57%), Gaps = 39/456 (8%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGS 113
           +D  S+V +VFD++P+ N+VS  ++I  F   + Y+ A+ +F  +L    + P+E +  S
Sbjct: 59  ADMHSAV-RVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSS 117

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ +   +  LN G+Q+H    K GL    +V ++++D+Y K                  
Sbjct: 118 VLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKC----------------- 160

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                           F++ +KLFQ +  R+VV+WN ++ G+ Q  + EEA N F  M R
Sbjct: 161 --------------RFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRR 206

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           EG++P+ ++    + ++A++AAL  G + H   +K     ++ +  SLI+ YAKCGS+ D
Sbjct: 207 EGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVD 266

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VF+ + + N+++W A+I  Y  +G   + IE FE M   GI P+ VT + +L AC+H
Sbjct: 267 AYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSH 326

Query: 354 TGLVEKGYSYF-SQAKLED--PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           TG VE+G ++F S  K+ D  PG   PEHYACMVDLL R+G   EAK F+  +P  P   
Sbjct: 327 TGRVEEGLAHFNSMKKIHDMNPG---PEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPS 383

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALLG C+ + N+++G  AA R+  ++P +  +YV+L+N  + +G+ +  + +RR M 
Sbjct: 384 VWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMG 443

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
             G+ + PGCSWI++K+   VF   DR+H  +DEIY
Sbjct: 444 VNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIY 479



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 175/357 (49%), Gaps = 39/357 (10%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P++FTF S++ +S A   +  G+QLH+   K G  +N+FVG+A++D+Y K + +  A RV
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+                               +MP RN+VSWN+MI G+      + AV
Sbjct: 68  FD-------------------------------QMPERNLVSWNSMIVGFFHNNLYDRAV 96

Query: 226 NLFIEMLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
            +F ++LRE  ++PN  ++   + A AN+  L  G+  H   VKF      +V NSL+  
Sbjct: 97  GVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDM 156

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y KC   ++ + +F  + +R++VTWN ++ G+ QN + EEA  +F  MR  GI P+  + 
Sbjct: 157 YFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASF 216

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYDL 403
             +L +      + +G +   Q  +   G +K       ++ + ++ G   +A +    +
Sbjct: 217 STVLHSSASLAALHQGTAIHDQ--IIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI 274

Query: 404 PFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
             D  +  W A++   Q+H  +N  +  F       ++P  V ++V + +A S  G+
Sbjct: 275 E-DHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHV-TFVCVLSACSHTGR 329



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 1/122 (0%)

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G  PN  T    + A+A    +  G+  H+   K     ++FVG +L+  YAKC  M  +
Sbjct: 5   GPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSA 64

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER-MRINGIRPNGVTLLGLLWACNH 353
           + VFD++ ERN+V+WN++I G+  N   + A+  F+  +R   + PN V++  +L AC +
Sbjct: 65  VRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACAN 124

Query: 354 TG 355
            G
Sbjct: 125 MG 126



 Score = 45.1 bits (105), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 25/187 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D +    QVF+ + D NV+S T +I  +       + I LF  ML   I PS  T
Sbjct: 261 CGSLVDAY----QVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVT 316

Query: 111 FGSVIPSST-------ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           F  V+ + +        L   N  K++H       +       + ++DL  +   ++EA 
Sbjct: 317 FVCVLSACSHTGRVEEGLAHFNSMKKIH------DMNPGPEHYACMVDLLGRAGWLDEAK 370

Query: 164 RVFED---THNPNVVSYTTMIC---GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
           R  E       P+V       C   G LK  R E A +LF+  P+ N  ++  +    ++
Sbjct: 371 RFIESMPMKPTPSVWGALLGACRKYGNLKMGR-EAAERLFEMEPY-NPGNYVLLANMCTR 428

Query: 218 TGRNEEA 224
           +GR EEA
Sbjct: 429 SGRLEEA 435


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 167/475 (35%), Positives = 249/475 (52%), Gaps = 43/475 (9%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLN--VVSATTIIGRFAKQHHYEEAIYLFSRM 99
           P ++T  +S   +     +  +VF+E        V    ++  +       +A+ LF +M
Sbjct: 75  PFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQM 134

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
               +  +  T   +IP+  +  +L LG  LH    K G  S+V V +  + +Y+K  S+
Sbjct: 135 NEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSV 194

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
             A                                KLF EMP + ++SWNAM+ GY+Q G
Sbjct: 195 NYAQ-------------------------------KLFDEMPVKGLISWNAMVSGYAQNG 223

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS--FHACAVKFLGKLDVFV 277
                + L+  M   G+ P+  TL   + + AN+ A  +G    F   A  F    + F+
Sbjct: 224 LATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTS--NPFL 281

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N+LI+ YA+CG++  +  VFD + ER +V+W A+I GY  +G GE A++ F+ M  +GI
Sbjct: 282 NNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGI 341

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFK 394
            P+G   + +L AC+H GL ++G  YF   K     +PG   PEHY+CMVDLL R+GR K
Sbjct: 342 EPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPG---PEHYSCMVDLLGRAGRLK 398

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           EA+  +  +P  P    W ALLG C+IH NVEL E A  R++ L+PE++  YV+LSN  S
Sbjct: 399 EAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYS 458

Query: 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            A     V  IR  MKEK + + PGCS++E+K +VH F+ GDRNH  +DEIY VL
Sbjct: 459 NANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVL 513



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 12/217 (5%)

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           WN  +   ++  +  +A++L+ +MLR G  PN  T P A+ + A ++   +G  FH    
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEA 325
           K     + FV   LIS Y K   ++++  VF++   + +  V +NA++ GY  N +  +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS-YFSQAKL---EDPGMLKPEHYA 381
           +  F +M   G+  N VTLLGL+ AC     +E G S + S  K     D  ++      
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVN----- 182

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           C + +  + G    A++   ++P   G+  W A++ G
Sbjct: 183 CFITMYMKCGSVNYAQKLFDEMPVK-GLISWNAMVSG 218



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 56/288 (19%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ L+  C S ++L   S LH     Y  ++  + V    T  ++     CGS     + 
Sbjct: 146 LLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMK-----CGS----VNY 196

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             ++FDE+P   ++S   ++  +A+       + L+  M +  + P   T   V+ S   
Sbjct: 197 AQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCAN 256

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L   ++G ++       G  SN F+ +A++++Y +  ++ +A  VF+      +VS+T +
Sbjct: 257 LGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAI 316

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I                               GGY   G  E AV LF EM+R G+ P+ 
Sbjct: 317 I-------------------------------GGYGMHGHGEIAVQLFKEMIRSGIEPDG 345

Query: 241 STLPCAIIAAANIA----------------ALGMGKSFHACAVKFLGK 272
           +   C + A ++                   L  G   ++C V  LG+
Sbjct: 346 TAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGR 393


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  297 bits (761), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 262/472 (55%), Gaps = 2/472 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPS 107
           VS  ++S        +FDE P  ++   ++++   +     E A+ +   ML  + + P 
Sbjct: 21  VSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILRCMLSADALHPD 80

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            F   SV      L    LG+QLHA         +  V S+++D+Y K  S ++  +VF+
Sbjct: 81  HFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFD 140

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                N V +T ++ G     R E+AL+LF+ MP RN+ +W A+I G   TG +  AV L
Sbjct: 141 SMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVEL 200

Query: 228 FIEMLREGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           F+EM R+G+ + +   L   I A+A++AA  +G+  H  A++     ++ VGN+LI  Y+
Sbjct: 201 FVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYS 260

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KC  +  +  VF+ +T R++++W  ++ G AQ+GR EEA+  ++RM + G +PN VT +G
Sbjct: 261 KCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVG 320

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           L++AC+H GLV+KG   F   K E     + +HY C +DLLSRSG   EA+E +  +P++
Sbjct: 321 LIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYE 380

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W ALL  C  + + E+    + ++L L P+D S+Y++LSN  +V GKWD+V+ +R
Sbjct: 381 PDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVR 440

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + M    + + PG SWIE   +  +F  G+    + +EI   L     ++R+
Sbjct: 441 KCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRK 492



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           H PN  +   ++    K     DAL LF E P R++  +++++   S +   E A+ +  
Sbjct: 13  HPPNPAA---LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSASPELALPILR 69

Query: 230 EMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            ML  + L P+H  +       A + +  +G+  HA  V      D  V +SL+  Y KC
Sbjct: 70  CMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKC 129

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS +D   VFD ++ +N V W A++ GYA NGR EEA++ F  M        G  L    
Sbjct: 130 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM-------PGRNLFA-- 180

Query: 349 WACNHTGLVEKGYS 362
           W    +GLV  G S
Sbjct: 181 WTALISGLVNTGES 194


>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
 gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
          Length = 563

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 164/461 (35%), Positives = 256/461 (55%), Gaps = 13/461 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALE 122
           +FD +   NV   T +I  +A     + A  L+  M+    IRP+ F +  V+ S   + 
Sbjct: 98  IFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVL 157

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS-IEEATRVFEDTHNPNVVSYTTMI 181
             N  K +H    K G      V +AI+D Y + SS I  A ++F++     VVS+T MI
Sbjct: 158 GSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMI 217

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL----- 236
            G  +   F+ A++LF+ MP R+V +WNA+I G +Q G   EA+ LF  M+   L     
Sbjct: 218 SGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNN 277

Query: 237 ----VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
                PN +TL  A+ A  +   L +GK  H    K     D F+ N+L+  Y KCG+++
Sbjct: 278 DRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKCGNLK 337

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI--NGIRPNGVTLLGLLWA 350
            +  VFD +T +N+ +WN++I   A +G    AI+ F  +    +G++PN VT +G+L A
Sbjct: 338 VARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVGVLNA 397

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C H GLVEKGYSYF   + +     + EH+ C++DLL R+GRF+EA E +  +  +P   
Sbjct: 398 CTHGGLVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNIEPDEV 457

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W +LL  C+IH   +L E++ ++++ +DP++    +ML+N  +  GKWD V  +RR +K
Sbjct: 458 VWGSLLNACKIHGRSDLAEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKVRRLLK 517

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
           EK   + PGCSWIE+ ++V+ F + D +H   +EIY  L S
Sbjct: 518 EKNAYKTPGCSWIEVDNQVYQFYSFDMSHPSVEEIYKTLES 558



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 16/204 (7%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI- 104
           T  +S  +    F S  ++F+ +P+ +V +   +I   A+   + EAI+LF RM+LL + 
Sbjct: 214 TAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALE 273

Query: 105 --------RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL 156
                   +P++ T GS + +      L+LGK +H +  K     + F+ +A+LD+Y K 
Sbjct: 274 GNNNDRENKPNKTTLGSALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKC 333

Query: 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH------RNVVSWNA 210
            +++ A RVF+     N+ S+ ++I  L        A+ LF E+ H       N V++  
Sbjct: 334 GNLKVARRVFDMITLKNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVG 393

Query: 211 MIGGYSQTGRNEEAVNLFIEMLRE 234
           ++   +  G  E+  + F EM+R 
Sbjct: 394 VLNACTHGGLVEKGYSYF-EMMRR 416


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 262/472 (55%), Gaps = 29/472 (6%)

Query: 57  KFSSVHQ---VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           KF+ V +   +F E+P  NVVS  T++  +A+    ++A+ LF RM   N+        +
Sbjct: 76  KFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITA 135

Query: 114 V-----IPSSTALEDLNLGKQLHAWATKV-GLQS-----------------NVFVGSAIL 150
           +     I  +  L D    + + +W T V GL                   NV   +A++
Sbjct: 136 LVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMI 195

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
             Y +   ++EA ++F+     ++ S+ TMI G ++      A KLF EM  +NV++W A
Sbjct: 196 TGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTA 255

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
           M+ GY Q G +EEA+ +FI+ML    L PN  T    + A +++A L  G+  H    K 
Sbjct: 256 MMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKT 315

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEAIE 327
           + +    V ++LI+ Y+KCG +  +  +FD   L++R++++WN +I  YA +G G+EAI 
Sbjct: 316 VFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAIN 375

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
            F  M+  G+  N VT +GLL AC+HTGLVE+G+ YF +        L+ +HYAC+VDL 
Sbjct: 376 LFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLC 435

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447
            R+GR KEA   +  L  +  +  W ALL GC +H N ++G+  A +IL ++P++  +Y 
Sbjct: 436 GRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYS 495

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           +LSN  +  GKW   +N+R  MK+ G+ + PGCSWIE+ + V VFV GD+ H
Sbjct: 496 LLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQVFVVGDKPH 547



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 170/375 (45%), Gaps = 74/375 (19%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VF+E+P+ ++   TT+I  + K     EA  LF R                       
Sbjct: 21  RKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDR----------------------- 57

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
                      W  K     NV   +A+++ YIK + ++EA R+F +    NVVS+ TM+
Sbjct: 58  -----------WDAK----KNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMV 102

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM---------- 231
            G  +    + AL LF+ MP RNVVSWN +I    Q GR E+A  LF +M          
Sbjct: 103 DGYARNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTT 162

Query: 232 LREGLVPN---------HSTLPCAIIAAANIAALGMGKSFHAC-AVKFLGKL---DVFVG 278
           +  GL  N            +P   + + N    G  ++     A++   ++   D+   
Sbjct: 163 MVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSW 222

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGI 337
           N++I+ + + G +  +  +F ++ E+N++TW A++ GY Q+G  EEA+  F +M   N +
Sbjct: 223 NTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNEL 282

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +PN  T + +L AC+    + +G   +   S+   +D   +     + ++++ S+ G   
Sbjct: 283 KPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCV----VSALINMYSKCGELH 338

Query: 395 EAKEFLYDLPFDPGI 409
            A++      FD G+
Sbjct: 339 TARKM-----FDDGL 348



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 46/209 (22%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMI-----CGLLKRER------------------------ 189
           I+ A +VFE+    ++  +TTMI     CG+++  R                        
Sbjct: 17  IDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIK 76

Query: 190 ---FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
               ++A +LF EMP RNVVSWN M+ GY++ G  ++A++LF  M    +V + +T+  A
Sbjct: 77  FNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVV-SWNTIITA 135

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKL---DVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
           ++    I            A +   ++   DV    ++++  AK G +ED+  +FD++  
Sbjct: 136 LVQCGRIED----------AQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPV 185

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           RN+V+WNA+I GYAQN R +EA++ F+RM
Sbjct: 186 RNVVSWNAMITGYAQNRRLDEALQLFQRM 214



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 137/322 (42%), Gaps = 52/322 (16%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+  +++ +      +FD++P  NVVS   +I  +A+    +EA+ LF RM   ++ 
Sbjct: 161 TTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDM- 219

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           PS   + ++I       +LN  ++L         + NV   +A++  Y++    EEA RV
Sbjct: 220 PS---WNTMITGFIQNGELNRAEKLFGEMQ----EKNVITWTAMMTGYVQHGLSEEALRV 272

Query: 166 F-----EDTHNPNVVSYTTMICG---------------LLKRERFED------------- 192
           F      +   PN  ++ T++                 ++ +  F+D             
Sbjct: 273 FIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYS 332

Query: 193 -------ALKLFQE--MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                  A K+F +  +  R+++SWN MI  Y+  G  +EA+NLF EM   G+  N  T 
Sbjct: 333 KCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTF 392

Query: 244 PCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              + A ++   +  G K F         +L       L+    + G ++++  + + L 
Sbjct: 393 VGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLG 452

Query: 303 ERNIVT-WNAVICGYAQNGRGE 323
           E   +T W A++ G   +G  +
Sbjct: 453 EEVPLTVWGALLAGCNVHGNAD 474



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 28/199 (14%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N  IS   + G ++ +  VF+++ ER+I  W  +I GY + G   EA + F+R      +
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRW---DAK 61

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAK------LEDPGMLKPEHYACMVDLLSRSGR 392
            N VT   ++           GY  F+Q K       E P +     +  MVD  +R+G 
Sbjct: 62  KNVVTWTAMV----------NGYIKFNQVKEAERLFYEMP-LRNVVSWNTMVDGYARNGL 110

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG--EFAARRILALDPEDVSSYVMLS 450
            ++A +    +P +  +  W  +     I + V+ G  E A R    +   DV S+  + 
Sbjct: 111 TQQALDLFRRMP-ERNVVSWNTI-----ITALVQCGRIEDAQRLFDQMKDRDVVSWTTMV 164

Query: 451 NALSVAGKWDNVSNIRREM 469
             L+  G+ ++   +  +M
Sbjct: 165 AGLAKNGRVEDARALFDQM 183


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 160/457 (35%), Positives = 256/457 (56%), Gaps = 31/457 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD + + ++VS  T+IG + +     EA+ +F  M     + SEFT  SV+ +  A  
Sbjct: 119 QVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANC 178

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D    K+LH  + K  L  N++VG+A+LDLY K                          C
Sbjct: 179 DALECKKLHCLSMKTSLDLNLYVGTALLDLYAK--------------------------C 212

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G++      DA+++F+ M  ++ V+W++M+ GY Q+   EEA+ L+    R  L  N  T
Sbjct: 213 GMIN-----DAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFT 267

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I A +N+AAL  GK  HA   K     +VFV +S +  YAKCGS+ +S ++F ++ 
Sbjct: 268 LSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ 327

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+NI  WN +I G+A++ R +E +  FE+M+ +G+ PN VT   LL  C HTGLVE+G  
Sbjct: 328 EKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRR 387

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F   +          HY+CMVD+L R+G   EA E +  +PF+P    W +LL  C++ 
Sbjct: 388 FFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVC 447

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+EL E AA+++  L+PE+  ++V+LSN  +   +W+ ++  R+ +++  + +V G SW
Sbjct: 448 KNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSW 507

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           I+IK KVH+F  G+ +H    EI  +L +   ++R+F
Sbjct: 508 IDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKF 544



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 148/307 (48%), Gaps = 17/307 (5%)

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           D    NV+      CG +     E A ++F  M  R++VSWN MIG Y++     EA+++
Sbjct: 97  DVTLSNVLINAYSKCGFV-----ELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDI 151

Query: 228 FIEMLREGLVPNHSTLPCAIIA-AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           F EM  EG   +  T+   + A  AN  AL   K  H  ++K    L+++VG +L+  YA
Sbjct: 152 FWEMRNEGFKFSEFTISSVLSACGANCDALEC-KKLHCLSMKTSLDLNLYVGTALLDLYA 210

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCG + D++ VF+ + +++ VTW++++ GY Q+   EEA+  + R +   +  N  TL  
Sbjct: 211 KCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSS 270

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPF 405
           ++ AC++   + +G      A +   G       A   VD+ ++ G  +E+     ++  
Sbjct: 271 VICACSNLAALIEGKQM--HAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ- 327

Query: 406 DPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           +  I  W  ++ G   H+  +  +  F   +   + P +V+     S+ LSV G    V 
Sbjct: 328 EKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT----FSSLLSVCGHTGLVE 383

Query: 464 NIRREMK 470
             RR  K
Sbjct: 384 EGRRFFK 390



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 23/254 (9%)

Query: 200 MPHRNVVSWNA-------MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           +P +N++ + A       ++   S T      +++F    +E L P   +    ++ A++
Sbjct: 6   LPSKNILGFTANFLIRCKILPRRSNTSSLSRNISVFASYEQEELSPGRYSDEFNVVQASD 65

Query: 253 I----------AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
                       A+   K+ H   ++   + DV + N LI+ Y+KCG +E +  VFD + 
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC--NHTGLVEKG 360
           ER++V+WN +I  Y +N    EA++ F  MR  G + +  T+  +L AC  N   L  K 
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
               S     D  +        ++DL ++ G   +A +    +  D     W +++ G  
Sbjct: 186 LHCLSMKTSLDLNLYVG---TALLDLYAKCGMINDAVQVFESMQ-DKSSVTWSSMVAGYV 241

Query: 421 IHSNVELGEFAARR 434
              N E      RR
Sbjct: 242 QSKNYEEALLLYRR 255


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 253/469 (53%), Gaps = 48/469 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S S    SV ++F+ +P+ ++VS  TII   A+   Y E + +   M   N++P  FT  
Sbjct: 245 SHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLS 304

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+P      D++ GK++H  + + GL + V+V S+++D+Y K +               
Sbjct: 305 SVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCT--------------- 349

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                           R  D+ ++F  +  R+ +SWN++I G  Q G  +E +  F +ML
Sbjct: 350 ----------------RVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQML 393

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              + P   +    + A A++  L +GK  H    +     ++F+ +SL+  YAKCG++ 
Sbjct: 394 MAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIR 453

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +  +FD++  R++V+W A+I G A +G   +AIE FE+M+  GI PN V  + +L AC+
Sbjct: 454 TARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACS 513

Query: 353 HTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H GLV++ + YF+   L+    PG+   EHYA + DLL R+GR +EA +F+  +P  P  
Sbjct: 514 HAGLVDEAWKYFNSMTLDFGIAPGV---EHYAAVSDLLGRAGRLEEAYDFICGMPIGPTG 570

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W  LL  C++H NV++ E  A RIL +DP++  +Y++L+N  S A +W   +  R  +
Sbjct: 571 SVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASL 630

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +  G+ + P CSWIE+++KV+ F+ GD +H            C E+IRE
Sbjct: 631 RRTGIRKTPACSWIEVRNKVYAFMAGDESH-----------PCYEKIRE 668



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 10/148 (6%)

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
             D+L+LF  +     ++W ++I  Y+  G   +++  FI ML  GL P+H+  P  + A
Sbjct: 58  LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKA 117

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS-------LLVFDKLT 302
            A +  L +G+S H   ++     D++ GN+L++ Y+K   ++ S         V D++T
Sbjct: 118 CAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMT 177

Query: 303 ERN-IVTWNAVICGYAQNGRGEEAIEFF 329
           ER   V   +V+ G    GR    IE F
Sbjct: 178 ERTRSVRTASVLVG--NQGRKVSDIEAF 203



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 136/328 (41%), Gaps = 51/328 (15%)

Query: 96  FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
           F  ML   + P    F SV+ +   L DLNLG+ LH +  +VGL  +++ G+A++++Y K
Sbjct: 96  FIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSK 155

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH--RNVVSWNAMIG 213
           L  ++++                        R+R   A ++  EM    R+V + + ++G
Sbjct: 156 LRFLKKS-----------------------GRQRL-GASQVLDEMTERTRSVRTASVLVG 191

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
              +   + EA N  +                A +   +       +   AC    LG+ 
Sbjct: 192 NQGRKVSDIEAFNYDVSCRSREFE--------AQVLEIDYKPRSEYREMEACN---LGQQ 240

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
              + +S+        S++    +F+ + E+++V+WN +I G A+NG   E +     M 
Sbjct: 241 IKDISHSM--------SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMG 292

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSG 391
              ++P+  TL  +L        + KG      +  +    L  E Y  + ++D+ ++  
Sbjct: 293 GANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQG---LDAEVYVASSLIDMYAKCT 349

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           R  ++      L    GI  W +++ GC
Sbjct: 350 RVVDSYRVFTLLTERDGIS-WNSIIAGC 376


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 148/334 (44%), Positives = 211/334 (63%), Gaps = 2/334 (0%)

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K   F+ A  +F++M  ++V+SW +++ G    G  EEA+ LF EM   G+ P+   +  
Sbjct: 14  KXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAA 73

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + A A +  L  GK  HA  +K      + V NSL+S YAKCG +ED+  VFD +  ++
Sbjct: 74  VLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQD 133

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           ++TW A+I GYAQNGRG E++ F+  M  +G++P+ +T +GLL+AC+H GLVE G SYF 
Sbjct: 134 VITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYF- 192

Query: 366 QAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
           Q+  E  G+   PEHYACM+DLL RSG+  EAKE L  +   P    WKALL  C++H N
Sbjct: 193 QSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGN 252

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           VELGE AA  +  L+P++   YV+LSN  S AGKW+  +  RR MK +G+++ PGCSWIE
Sbjct: 253 VELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIE 312

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + SKVH F++ DR+H    EIY+ +      I+E
Sbjct: 313 MSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKE 346



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 143/341 (41%), Gaps = 66/341 (19%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F     VF+++ D +V+S T+++        YEEA+ LF  M ++ I P +    +V+ +
Sbjct: 18  FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA 77

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L  L  GKQ+HA   K GL S++ V ++++ +Y K   IE+A +VF+     +V+++
Sbjct: 78  CAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITW 137

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T +I                                GY+Q GR  E++N + +M+  G+ 
Sbjct: 138 TALIV-------------------------------GYAQNGRGRESLNFYNBMIASGVK 166

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  T    + A ++   +  G+S+                 S+   Y      E    +
Sbjct: 167 PDFITFIGLLFACSHAGLVEHGRSYF---------------QSMEEVYGIKPGPEHYACM 211

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            D L                ++G+  EA E   +M    ++P+      LL AC   G V
Sbjct: 212 IDLL---------------GRSGKLMEAKELLNQM---AVQPDATVWKALLAACRVHGNV 253

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           E G    +     +P    P  Y  + +L S +G+++EA +
Sbjct: 254 ELGERAANNLFELEPKNAVP--YVLLSNLYSAAGKWEEAAK 292



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 52/85 (61%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
            V N+L+  YAK G  + +  VF+K+T++++++W +++ G   NG  EEA+  F  MRI 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKG 360
           GI P+ + +  +L AC    ++E G
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFG 87


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 171/527 (32%), Positives = 273/527 (51%), Gaps = 66/527 (12%)

Query: 57  KFSSVH---QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +F  +H   ++FD++P  N  +   +   + +  H+ + + LF  +  +   P+ FTF  
Sbjct: 56  RFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPM 115

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVF----------------------------- 144
           +I S   LE +  G+++H  ATK G +SN F                             
Sbjct: 116 IIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERN 175

Query: 145 --VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK-------RERFE---- 191
             V +AI++ YI    +    R+F+     +VV ++ +I G ++       RE F+    
Sbjct: 176 VVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPN 235

Query: 192 -DAL-------------------KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            D +                   K+F EMP RNV SWN +IGGY + G   E +  F  M
Sbjct: 236 RDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRM 295

Query: 232 LREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           L EG ++PN  TL   + A + + AL MGK  H  A     K ++FVGN LI  YAKCG 
Sbjct: 296 LVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGV 355

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E++++VF+ L  ++I++WN +I G A +G   +A+  F+RM+  G  P+GVT +G+L A
Sbjct: 356 IENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSA 415

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C H GLV+ G+ YF         + + EHY CMVDLL R+G   +A  F+  +P +P   
Sbjct: 416 CTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAV 475

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALLG C+++ NVE+ E A +R++ L+P + +++VM+SN     G+ ++V+ ++  M+
Sbjct: 476 IWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMR 535

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + G  ++PGCS IE    V  F + D  H   + IY VL+  T  +R
Sbjct: 536 DTGFRKLPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLR 582



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 81/164 (49%), Gaps = 2/164 (1%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           Y +L  I+         HN  V       C   KR     A KLF ++P  N  +WNAM 
Sbjct: 25  YERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKR--IHHARKLFDKIPQPNTATWNAMF 82

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
            GY Q G + + V LF E+ R   +PN  T P  I +   +  +  G+  H CA K   K
Sbjct: 83  RGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFK 142

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
            + FV  SLI  Y+K G +ED+  VF ++ ERN+V W A+I GY
Sbjct: 143 SNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGY 186



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 20/200 (10%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF-ERMRI 334
           FV  + I+  ++   +  +  +FDK+ + N  TWNA+  GY QNG   + +  F E  RI
Sbjct: 45  FVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRI 104

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGR 392
            G+ PN  T   ++ +C     V +G      A        K   +    ++D+ S+ G 
Sbjct: 105 AGM-PNCFTFPMIIKSCGKLEGVREGEEVHCCATKHG---FKSNSFVATSLIDMYSKKGC 160

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED--------VS 444
            ++A +   ++  +  +  W A++ G  +  +V     + RR+  L PE         +S
Sbjct: 161 VEDAYKVFGEM-HERNVVVWTAIINGYILCGDV----VSGRRLFDLAPERDVVMWSVLIS 215

Query: 445 SYVMLSNALSVAGKWDNVSN 464
            Y+   N  +    +D + N
Sbjct: 216 GYIESKNMAAARELFDKMPN 235


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 168/505 (33%), Positives = 279/505 (55%), Gaps = 43/505 (8%)

Query: 37  QKLETPAIRTDSV---------------SCGSESDKFSSVHQVFDEVPDLNVVSATTIIG 81
           +++   A+RTD V               +CG    +  S   VFD V D  +     +I 
Sbjct: 236 KEIHAYALRTDDVIENSFVGSALVDMYCNCG----QVESGRLVFDSVLDRKIGLWNAMIA 291

Query: 82  RFAKQHHYEEAIYLFSRM-LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ 140
            +A+  H E+A+ LF  M     +  +  T  S++P+    E ++  + +H +  K GL+
Sbjct: 292 GYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLE 351

Query: 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           +N ++ +A++D+Y ++  I+ + R+F+   + ++VS+ T+I   +   R  DAL L  EM
Sbjct: 352 TNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEM 411

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
             + +   +   G Y     N+E    F         PN  TL   +   A+++AL  GK
Sbjct: 412 --QRIEEKSTYDGDY-----NDEKQVPF--------KPNSITLMTVLPGCASLSALAKGK 456

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
             HA A++ L    V VG++L+  YAKCG +  +  VFD++  RN++TWN +I  Y  +G
Sbjct: 457 EIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHG 516

Query: 321 RGEEAIEFFERMRING-----IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           +G+E++E FE M   G     ++P  VT + L  +C+H+G+V++G S F + K E     
Sbjct: 517 KGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEP 576

Query: 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAAR 433
            P+HYAC+VDL+ R+G+ +EA   +  +P  FD  +G W +LLG C+I+ N+E+GE AA 
Sbjct: 577 APDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDK-VGAWSSLLGACRIYHNIEIGEIAAE 635

Query: 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFV 493
            +L L P+  S YV+LSN  S AG WD   N+RR MK  G+ + PGCSWIE   +VH F+
Sbjct: 636 NLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFL 695

Query: 494 TGDRNHHMNDEIYAVLRSCTEQIRE 518
            GD +H  +++++  L + +E++++
Sbjct: 696 AGDLSHPQSEKLHDFLETLSERLKK 720



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 153/318 (48%), Gaps = 38/318 (11%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS--NVFVGSAILDLYIKLSSIEEAT 163
           P  F F +V+ +   +++L LGKQ+HA   K G  S  +V + + ++++Y K        
Sbjct: 8   PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGK-------- 59

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                             CG L      DA K+F  +  R+ VSWN++I    +    E 
Sbjct: 60  ------------------CGGLG-----DAYKVFDRITERDQVSWNSIISALCRFEEWEV 96

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIA---ALGMGKSFHACAVKFLGKLDVFVGNS 280
           A+  F  ML EG  P+  TL    +A +N+     L +GK  H C  +  G    F  N+
Sbjct: 97  AIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFR-KGHWRTFSNNA 155

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L++ YAK G ++D+  +     +R++VTWN++I  ++QN R  EA+ F   M + G++P+
Sbjct: 156 LMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPD 215

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
           GVT   +L AC+H  L+  G    + A   D  +      + +VD+    G+  E+   +
Sbjct: 216 GVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQV-ESGRLV 274

Query: 401 YDLPFDPGIGFWKALLGG 418
           +D   D  IG W A++ G
Sbjct: 275 FDSVLDRKIGLWNAMIAG 292



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 174/374 (46%), Gaps = 49/374 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D +    +VFD + + + VS  +II    +   +E AI  F  ML+    PS FT
Sbjct: 60  CGGLGDAY----KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFT 115

Query: 111 FGSVIPSSTAL---EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             S+  + + L   + L LGKQ+H    + G     F  +A++ +Y KL  +++A  +  
Sbjct: 116 LVSMALACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSL-- 172

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                                     L LF++   R++V+WN+MI  +SQ  R  EA+  
Sbjct: 173 --------------------------LVLFED---RDLVTWNSMISSFSQNERFMEALMF 203

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYA 286
              M+ EG+ P+  T    + A +++  L  GK  HA A++    ++  FVG++L+  Y 
Sbjct: 204 LRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYC 263

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-INGIRPNGVTLL 345
            CG +E   LVFD + +R I  WNA+I GYAQ+   E+A+  F  M    G+  N  T+ 
Sbjct: 264 NCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMS 323

Query: 346 GLLWA---CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
            ++ A   C      E  + Y  +  LE    L+      ++D+ SR G  K +K  ++D
Sbjct: 324 SIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQN----ALIDMYSRMGDIKTSKR-IFD 378

Query: 403 LPFDPGIGFWKALL 416
              D  I  W  ++
Sbjct: 379 SMEDRDIVSWNTII 392



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 157/352 (44%), Gaps = 48/352 (13%)

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           D ++V+  ++I  F++   + EA+     M+L  ++P   TF SV+P+ + L+ L  GK+
Sbjct: 178 DRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKE 237

Query: 130 LHAWATKV-GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           +HA+A +   +  N FVGSA++D+Y     +E    VF+   +  +  +  MI G  + E
Sbjct: 238 IHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSE 297

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
             E AL LF EM                      EA          GL  N +T+   + 
Sbjct: 298 HDEKALMLFIEM----------------------EAA--------AGLYSNATTMSSIVP 327

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A      +   +  H   +K   + + ++ N+LI  Y++ G ++ S  +FD + +R+IV+
Sbjct: 328 AYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVS 387

Query: 309 WNAVICGYAQNGRGEEAIEFFERMR-------ING---------IRPNGVTLLGLLWACN 352
           WN +I  Y   GR  +A+     M+        +G          +PN +TL+ +L  C 
Sbjct: 388 WNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCA 447

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
               + KG    + A + +    +    + +VD+ ++ G    A+     +P
Sbjct: 448 SLSALAKGKEIHAYA-IRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMP 498



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 2/125 (1%)

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLD-VFVGNSLISFYAKC 288
           M+  G  P++   P  + A A I  L +GK  HA   KF  G    V + N+L++ Y KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G + D+  VFD++TER+ V+WN++I    +    E AI+ F  M + G  P+  TL+ + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 349 WACNH 353
            AC++
Sbjct: 121 LACSN 125


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/436 (34%), Positives = 254/436 (58%), Gaps = 2/436 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++P  +V      I  F+   H      L+ +M      P++++F  + P+  +L +
Sbjct: 38  LFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFN 97

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  G+ LH+   K G  S++F  +A+LD+Y KL  +  A ++F++    ++ ++ ++I G
Sbjct: 98  VYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAG 157

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHST 242
             +    E AL+LF +MP RNV+SW A+I GY+Q G+  +A+ +FI +  E G  PN  +
Sbjct: 158 YARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVS 217

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL- 301
           +   + A + + AL +GK   A A       + +V N+++  +A+CG++E++  VFD++ 
Sbjct: 218 IASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIG 277

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           ++RN+ +WN +I G A +GR  +A++ +++M I  +RP+ VT +GLL AC H G+V +G 
Sbjct: 278 SKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGR 337

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F   + +     K EHY C+VDLL R+G  +EA   + ++P  P    W  LLG C  
Sbjct: 338 QLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSF 397

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVELGE AA  +  L+P +  +YV+LSN  ++AG W  V+ +R+ MK   +T+  G S
Sbjct: 398 HGNVELGEVAAESLFKLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYS 457

Query: 482 WIEIKSKVHVFVTGDR 497
           +IE+   +H F+  DR
Sbjct: 458 YIEVGDGIHEFIVEDR 473



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 131/300 (43%), Gaps = 37/300 (12%)

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           +I  LL+      A  LF ++P  +V  +N  I  +S  G       L+ +M  +G  PN
Sbjct: 22  LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPN 81

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             +      A A++  +  G+  H+   K     D+F   +L+  YAK G +  +  +FD
Sbjct: 82  QYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFD 141

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI------------------------- 334
           ++  R+I TWN++I GYA++G  E A+E F +M +                         
Sbjct: 142 EMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEM 201

Query: 335 -------NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDL 386
                   G +PN V++  +L AC+  G ++ G     +A   + G  K  + +  +++L
Sbjct: 202 FIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRI--EAYARNNGFFKNAYVSNAVLEL 259

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAARRILALDPEDVS 444
            +R G  +EA++   ++     +  W  ++ G  +H      L  +    I  + P+DV+
Sbjct: 260 HARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVT 319



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 105/209 (50%), Gaps = 37/209 (17%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI--------------- 104
           S  Q+FDE+P  ++ +  ++I  +A+  H E A+ LF++M + N+               
Sbjct: 135 SARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGK 194

Query: 105 -----------------RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147
                            +P+E +  SV+P+ + L  L++GK++ A+A   G   N +V +
Sbjct: 195 YAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSN 254

Query: 148 AILDLYIKLSSIEEATRVFEDTHNP-NVVSYTTMICGLLKRERFEDALKLFQEMPHRNV- 205
           A+L+L+ +  +IEEA +VF++  +  N+ S+ TMI GL    R  DAL+L+ +M  R + 
Sbjct: 255 AVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMR 314

Query: 206 ---VSWNAMIGGYSQTGRNEEAVNLFIEM 231
              V++  ++   +  G   E   LF  M
Sbjct: 315 PDDVTFVGLLLACTHGGMVAEGRQLFESM 343


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/444 (35%), Positives = 253/444 (56%), Gaps = 1/444 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F    + NV   T +I  F    +Y +AI L+SRML  +I P  +   S++ +  +  
Sbjct: 102 RIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQL 161

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G+++H+ A K+GL SN  V   I++LY K   + +A RVFE+    +VV+ T MI 
Sbjct: 162 ALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMIS 220

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
               +   E+A  +F  +  ++ V W AMI G+ +      A+  F  M  E + PN  T
Sbjct: 221 SYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFT 280

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           + C + A + + AL +G+  H+   KF  +L++FVGN+LI+ Y++CGS++++  VFD++ 
Sbjct: 281 IVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK 340

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +R+++T+N +I G + NG+  +AIE F  M    +RP  VT +G+L AC+H GLV+ G+ 
Sbjct: 341 DRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFK 400

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            F     +     + EHY CMVDLL R GR +EA + +  +   P       LL  C++H
Sbjct: 401 IFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMH 460

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+ELGE  A+ +      D  +YV+LS+  + +GKW   + +R +MKE GM + PGCS 
Sbjct: 461 KNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSS 520

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIY 506
           IE+ +++H F+ GD  H   + IY
Sbjct: 521 IEVNNEIHEFLLGDLRHPRKERIY 544



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 165/345 (47%), Gaps = 30/345 (8%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +HA   + G   + F+   +L    K  +I+ A+R+F+ THNPNV  YT +I G +    
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
           + DA++L+  M H +++  N ++    +   ++ A       LREG   +   L    ++
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLA-------LREGREVHSRALKLG-LS 179

Query: 250 AANIAALGMGKSFHAC-----AVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +  +  L + + +  C     A +   ++  DV     +IS Y+  G +E++  VF ++ 
Sbjct: 180 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVR 239

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
            ++ V W A+I G+ +N     A+E F  M+   +RPN  T++ +L AC+  G +E G  
Sbjct: 240 RKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 299

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            +SY  + ++E    L       ++++ SR G   EA+  ++D   D  +  +  ++ G 
Sbjct: 300 VHSYMRKFEIE----LNLFVGNALINMYSRCGSIDEAQT-VFDEMKDRDVITYNTMISGL 354

Query: 420 QIHSN----VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
            ++      +EL      R   L P +V ++V + NA S  G  D
Sbjct: 355 SMNGKSRQAIELFRVMIGR--RLRPTNV-TFVGVLNACSHGGLVD 396



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 178/435 (40%), Gaps = 119/435 (27%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           M  +L  C S L+L +  ++HS A    +     S  +L    I      CG   D    
Sbjct: 150 MASILKACGSQLALREGREVHSRALKLGL-----SSNRLVRLRIMELYGKCGELGD---- 200

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR---------------------- 98
             +VF+E+P+ +VV++T +I  ++ Q   EEA  +FSR                      
Sbjct: 201 ARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEM 259

Query: 99  ---------MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAI 149
                    M   N+RP+EFT   V+ + + L  L +G+ +H++  K  ++ N+FVG+A+
Sbjct: 260 NRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNAL 319

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           +++Y +  SI+EA  VF++  + +V++Y TMI GL                         
Sbjct: 320 INMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGL------------------------- 354

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
                 S  G++ +A+ LF  M+   L P +                          V F
Sbjct: 355 ------SMNGKSRQAIELFRVMIGRRLRPTN--------------------------VTF 382

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT-----ERNIVTWNAVICGYAQNGRGEE 324
           +G L+      L+ F  K         +F  +T     E  I  +  ++    + GR EE
Sbjct: 383 VGVLNACSHGGLVDFGFK---------IFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEE 433

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK-LEDPGMLKPEHYACM 383
           A +    M++    P+ + L  LL AC     +E G      AK LED G      Y  +
Sbjct: 434 AYDLIRTMKMT---PDHIMLGTLLSACKMHKNLELGEQV---AKVLEDRGQADSGTYVLL 487

Query: 384 VDLLSRSGRFKEAKE 398
             + + SG++KEA +
Sbjct: 488 SHVYASSGKWKEAAQ 502


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 173/550 (31%), Positives = 278/550 (50%), Gaps = 50/550 (9%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFD 66
           +  +S S +KL ++H          Q        +  + T  +S  S  +       +F 
Sbjct: 48  LIHASNSTHKLRQIHG---------QLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQ 98

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
                N      +I   A+   +E +I  F  ML   I P   TF  V+ S+ AL +  +
Sbjct: 99  RFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGV 158

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT----HNPNVV------- 175
           G+ LH    K GL+ + FV  +++D+Y+K+  +  A +VF+++     N +V+       
Sbjct: 159 GRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIH 218

Query: 176 ------------------------SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
                                   S+ ++I G +K      A +LF +MP +NVVSW  M
Sbjct: 219 GYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTM 278

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           + G+SQ G  E+A+  F  ML EG  PN  T+  A+ A A I AL  G   H        
Sbjct: 279 VNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGF 338

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           KL++ +G +L+  YAKCG++E +  VF +  E+ ++ W+ +I G+A +G   +A+++FE 
Sbjct: 339 KLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEW 398

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK---LEDPGMLKPEHYACMVDLLS 388
           M+  G +P+ V  L +L AC+H+G V +G  +F   +   L +P M   +HY  +VD+L 
Sbjct: 399 MKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSM---KHYTLVVDMLG 455

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVM 448
           R+GR  EA +F+  +P  P    W AL   C+ H NVE+ E A++++L L+P+   SYV 
Sbjct: 456 RAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVF 515

Query: 449 LSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAV 508
           LSNA +  G+WD+   +R  M++ G  + PG S+IE+  K+H FV GD  H+   EIY+ 
Sbjct: 516 LSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSK 575

Query: 509 LRSCTEQIRE 518
           L   +   RE
Sbjct: 576 LDEISASARE 585


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/464 (34%), Positives = 268/464 (57%), Gaps = 36/464 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIP 116
           FS   +VFDE+ + NVV+ T +I   A+   YE+++ LF++M    ++ P+  T+ S + 
Sbjct: 200 FSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLM 259

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           + + L+ L  G+++H    K+G+QS++ + SA++DLY K  S++ A ++FE     + VS
Sbjct: 260 ACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVS 319

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
            T ++                                 ++Q G  EEA+ +F +M+  G+
Sbjct: 320 LTVILVA-------------------------------FAQNGFEEEAIQIFTKMVALGM 348

Query: 237 VPNHSTLPCAIIAAANIAA-LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
             + + +  A++    +   L +GK  H+  +K     + FVGN L++ Y+KCG + DSL
Sbjct: 349 EVD-ANMVSAVLGVFGVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSL 407

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           LVF ++T++N V+WN+VI  +A++G G +A++F+E MR+ G+ P  VT L LL AC+H G
Sbjct: 408 LVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAG 467

Query: 356 LVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           LVEKG     ++   D G+  + EHYAC+VD+L R+G   EAK+F+  LP   G+  W+A
Sbjct: 468 LVEKGMELL-ESMTNDHGISPRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQA 526

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG C IH + E+G++AA R+ +  P   + YV+++N  S  G W   ++  + MKE G+
Sbjct: 527 LLGACSIHGDSEMGKYAADRLFSAAPASPAPYVLMANIYSSEGNWKERASSIKRMKEMGV 586

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            +  G SWIEI+ KV+ FV GD+ H   D I+ VL    + +++
Sbjct: 587 AKEVGISWIEIEKKVNSFVVGDKLHPEADVIFWVLSGLLKHLKD 630



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 130/271 (47%), Gaps = 21/271 (7%)

Query: 100 LLLNIRP--SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
           L  NI+P  S++ F S   S     DL       +  T  G   N+ +GS+I    IK  
Sbjct: 11  LPFNIKPPHSQYLFPSTTKSLLNHADLT------SLLTLCGRDRNLTLGSSIHARIIK-- 62

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
             +  +  F+ +    +  + +++    K   F +A  +F  MP R+ VSWN MI G+ +
Sbjct: 63  --QPPSFDFDGSQRNALFIWNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLR 120

Query: 218 TGRNEEAVNLFIEMLREGLVP---NHSTLPCAIIAAANIAALGMGKSFHAC--AVKFLGK 272
            G  + +   F +M     V    + +TL   +++  +   LG+  S       + F+G 
Sbjct: 121 NGDFDTSFKFFKQMTESNRVCCRFDKATLT-TMLSGCDGLRLGISTSVTQMIHGLVFVGG 179

Query: 273 LD--VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            +  + VGN+LI+ Y KC        VFD++ ERN+VTW AVI G AQN   E+++  F 
Sbjct: 180 FEREITVGNALITSYFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFA 239

Query: 331 RMRING-IRPNGVTLLGLLWACNHTGLVEKG 360
           +MR  G + PN +T L  L AC+   ++  G
Sbjct: 240 QMRCCGSVSPNVLTYLSSLMACSGLQVLRDG 270



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 142/352 (40%), Gaps = 84/352 (23%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS      +  Q+F+   +L+ VS T I+  FA+    EEAI +F++M+ L +      
Sbjct: 299 CGS----LDAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANM 354

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             +V+        L LGKQ+H+   K     N FVG+ ++++Y K               
Sbjct: 355 VSAVLGVFGVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSK--------------- 399

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                      CG L      D+L +F +M  +N VSWN++I  +++ G   +A+  + E
Sbjct: 400 -----------CGDLS-----DSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFYEE 443

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  EG+ P   T    +               HAC                    +  G 
Sbjct: 444 MRVEGVAPTDVTFLSLL---------------HAC--------------------SHAGL 468

Query: 291 MEDSLLVFDKLTERNIVT-----WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           +E  + + + +T  + ++     +  V+    + G   EA +F E     G+  +G  L+
Sbjct: 469 VEKGMELLESMTNDHGISPRSEHYACVVDMLGRAGHLNEAKKFIE-----GLPEHGGVLV 523

Query: 346 --GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
              LL AC+  G  E G   ++  +L       P  Y  M ++ S  G +KE
Sbjct: 524 WQALLGACSIHGDSEMG--KYAADRLFSAAPASPAPYVLMANIYSSEGNWKE 573


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 160/468 (34%), Positives = 265/468 (56%), Gaps = 7/468 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFG 112
           E     +  ++FDE+   + VS   +I  + +   +E+AI  F  M    N +P E T  
Sbjct: 244 ELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVV 303

Query: 113 SVIPSSTALEDLNLGKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
           S + + TAL++L LG ++H +  K +G  + +   +A+LD+Y K   +  A  +F++   
Sbjct: 304 STLSACTALKNLELGDEIHNYVRKELGFTTRI--DNALLDMYAKCGCLNIARNIFDEMSM 361

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            NV+ +T+MI G +      +A  LF + P R+VV W AMI GY Q    ++AV LF EM
Sbjct: 362 KNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREM 421

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
             + + P+  T+   +   A + AL  GK  H    +    +DV VG +LI  Y+KCG +
Sbjct: 422 QIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCV 481

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           + SL +F +L +++  +W ++ICG A NG+  EA+  F  M   G +P+ +T +G+L AC
Sbjct: 482 DKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSAC 541

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG--- 408
           +H GLVE+G  +F+  K       K EHY C++DLL R+G   EA+E + ++P +     
Sbjct: 542 SHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIV 601

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           +  + ALL  C+IH+NV++GE  A+++  ++  D S + +L+N  +   +W++   +RR+
Sbjct: 602 VPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRK 661

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           MKE G+ ++PGCS IE+   VH F+ GD +H    EI ++L   T Q+
Sbjct: 662 MKELGVKKMPGCSLIEVDGIVHEFLVGDPSHPEMIEICSMLNRVTGQL 709



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 214/478 (44%), Gaps = 79/478 (16%)

Query: 9   RSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEV 68
           R+  S+++L ++ S      +E  + ++ KL   A   DS S G+         ++F+ V
Sbjct: 105 RNCKSMDQLKQIQSQIFRIGLEGDRDTINKL--MAFCADS-SLGN----LRYAEKIFNYV 157

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
            D ++     ++  +AK+    + + LF ++    + P  FT+  V+ +   L D+  G+
Sbjct: 158 QDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGE 217

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++  +  K G+  + +V ++++D+Y +LS++E A                          
Sbjct: 218 KVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAK------------------------- 252

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLPCAI 247
                 KLF EM  R+ VSWN MI GY +  R E+A+N F EM +EG   P+ +T+   +
Sbjct: 253 ------KLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTL 306

Query: 248 IAAANIAALGMGKSFHACAVKFLG---KLD---------------------------VFV 277
            A   +  L +G   H    K LG   ++D                           V  
Sbjct: 307 SACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVIC 366

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
             S+IS Y  CG + ++  +FDK   R++V W A+I GY Q    ++A+  F  M+I  I
Sbjct: 367 WTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKI 426

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +P+  T++ LL  C   G +E+G   + Y  + ++    ++       ++++ S+ G   
Sbjct: 427 KPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVG----TALIEMYSKCGCVD 482

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
           ++ E  Y+L  D     W +++ G  ++      L  F+    +   P+D++   +LS
Sbjct: 483 KSLEIFYELE-DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLS 539



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 132/281 (46%), Gaps = 11/281 (3%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A K+F  +   ++  +N M+  Y++ G   + + LF ++  +GL P+  T P  + A   
Sbjct: 150 AEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGC 209

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           +  +  G+      VK    LD +V NSLI  Y +  ++E++  +FD++T R+ V+WN +
Sbjct: 210 LRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVM 269

Query: 313 ICGYAQNGRGEEAIEFFERMRINGI-RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           I GY +  R E+AI  F  M+  G  +P+  T++  L AC     +E G    +  + E 
Sbjct: 270 ISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKEL 329

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF- 430
               + ++   ++D+ ++ G    A+    ++     I  W +++ G      +  G+  
Sbjct: 330 GFTTRIDN--ALLDMYAKCGCLNIARNIFDEMSMKNVI-CWTSMISG-----YINCGDLR 381

Query: 431 AARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            AR +    P  DV  +  + N       +D+   + REM+
Sbjct: 382 EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 422


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/415 (35%), Positives = 245/415 (59%)

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           N+ P  +TF  ++ +   L+    G  +H    K G + +  V + ++ +Y +L  +   
Sbjct: 107 NLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSC 166

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF+    P++V+ T M+    K    + A K+F EMP R+ V+WNAMI GY+Q GR+ 
Sbjct: 167 HNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSR 226

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+++F  M  EG+  N  ++   + A  ++  L  G+  HA   ++  ++ V +G +L+
Sbjct: 227 EALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALV 286

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKCG+++ ++ VF  + ERN+ TW++ I G A NG GEE+++ F  M+  G++PNG+
Sbjct: 287 DMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGI 346

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T + +L  C+  GLVE+G  +F   +       + EHY  MVD+  R+GR KEA  F+  
Sbjct: 347 TFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINS 406

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P  P +G W ALL  C+++ N ELGE A R+I+ L+ ++  +YV+LSN  +    W++V
Sbjct: 407 MPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESV 466

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           S++R+ MK KG+ ++PGCS IE+  +VH F+ GD++H   DEI   L   ++ +R
Sbjct: 467 SSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLR 521



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 94/173 (54%), Gaps = 4/173 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FDE+P+ + V+   +I  +A+     EA+ +F  M +  ++ +E +   V+ + T L+
Sbjct: 199 KMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQ 258

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L+ G+ +HA+  +  ++  V +G+A++D+Y K  +++ A +VF      NV ++++ I 
Sbjct: 259 VLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIG 318

Query: 183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEM 231
           GL      E++L LF +M    V    +++ +++ G S  G  EE    F  M
Sbjct: 319 GLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSM 371


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 171/525 (32%), Positives = 274/525 (52%), Gaps = 66/525 (12%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            +S  +VFD + +  VV  T +I R+ +    EEA+ +F   L     P  +T  S+I +
Sbjct: 204 LASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISA 263

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA----TRVFEDTHNPN 173
            T L  + LG QLH+ A ++G  S+  V   ++D+Y K S+IE+A     +VFE     +
Sbjct: 264 CTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK-SNIEQAMDYANKVFERMRKND 322

Query: 174 VVSYTTMICGLLKRERFED-ALKLFQEM------------------------------PH 202
           V+S+T +I G ++    E+  + LF EM                               H
Sbjct: 323 VISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVH 382

Query: 203 RNVVS---------WNAMIGGYSQTGRNEEAVNLFIEMLREGLVP--------------- 238
            +V+           NA++  Y+++G  EEA  +F ++    ++                
Sbjct: 383 AHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGRDAPLDHRIG 442

Query: 239 ------NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
                 + ST    I AAA++  L  G+  HA  +K     D FV NSL+S Y++CG +E
Sbjct: 443 RMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLE 502

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+   F++L +RN+++W ++I G A++G  E A+  F  M + G++PN VT + +L AC+
Sbjct: 503 DACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACS 562

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H GLV +G  YF   + +   + + EHYACMVDLL+RSG  KEA EF+ ++P       W
Sbjct: 563 HVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVW 622

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           K LLG C+ H N+E+GE AA+ ++ L+P D + YV+LSN  + AG WD V+ IR  M++ 
Sbjct: 623 KTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDN 682

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            + +  G SW+E+++  H F  GD +H    +IY  L +   +I+
Sbjct: 683 NLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIK 727



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 141/308 (45%), Gaps = 42/308 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           CG+     +S   VFD +  L ++VS T +    A+     E++ L   ML   + P+ +
Sbjct: 97  CGA----VASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAY 152

Query: 110 TFGSVIPSSTALE-DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFE 167
           T  +V  +    E    +G  +     K+GL  +++ VGSA++D+  +   +  A +VF+
Sbjct: 153 TLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFD 212

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                          GL+++                 VV W  +I  Y Q    EEAV +
Sbjct: 213 ---------------GLIEK----------------TVVVWTLLISRYVQGECAEEAVEI 241

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F++ L +G  P+  T+   I A   + ++ +G   H+ A++     D  V   L+  YAK
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK 301

Query: 288 CG---SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE-FFERMRINGIRPNGVT 343
                +M+ +  VF+++ + ++++W A+I GY Q+G  E  +   F  M    I+PN +T
Sbjct: 302 SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHIT 361

Query: 344 LLGLLWAC 351
              +L AC
Sbjct: 362 YSSILKAC 369



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 15/204 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VS  +ES       +VF+++ + +++S  T  GR A   H         R+  +++  S 
Sbjct: 401 VSMYAESGCMEEARRVFNQLYERSMISCITE-GRDAPLDH---------RIGRMDMGISS 450

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF S+I ++ ++  L  G+QLHA   K G  S+ FV ++++ +Y +   +E+A R F +
Sbjct: 451 STFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNE 510

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEA 224
             + NV+S+T+MI GL K    E AL LF +M       N V++ A++   S  G   E 
Sbjct: 511 LKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREG 570

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
              F  M R+ GL+P      C +
Sbjct: 571 KEYFRSMQRDHGLIPRMEHYACMV 594



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 105/249 (42%), Gaps = 35/249 (14%)

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           DL LG+ LH    +  L   +  V +++L LY +  ++  A  VF+              
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMR----------- 111

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            GL                  R++VSW AM    ++ G   E++ L  EML  GL+PN  
Sbjct: 112 -GL------------------RDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAY 152

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKF---LGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           TL CA+  A     L          +     L   D+ VG++LI   A+ G +  +  VF
Sbjct: 153 TL-CAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVF 211

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D L E+ +V W  +I  Y Q    EEA+E F     +G  P+  T+  ++ AC   G V 
Sbjct: 212 DGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVR 271

Query: 359 KGYSYFSQA 367
            G    S A
Sbjct: 272 LGLQLHSLA 280


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 257/472 (54%), Gaps = 11/472 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG    +     ++F+ +P  NV + T  +  F+    + EA+  F RM     RP   T
Sbjct: 110 CG----RLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVT 165

Query: 111 FGSVIPSSTALED--LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           F  ++ +   +    ++ G+++H +A   GL  NV VG+A++ +Y K   +++A   FE+
Sbjct: 166 FSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEE 225

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               N V++  M+       R  +AL+LF+EM   + V WNAMI  Y+Q GR ++A++L+
Sbjct: 226 LQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLY 285

Query: 229 IEML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
             M     L P   T    I   A ++AL  G++ HA         ++ V N+L+  Y K
Sbjct: 286 RSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGK 345

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG ++++L VF  +  ++ ++WN +I  YA +G  ++A+  ++ M + G++P  VT +GL
Sbjct: 346 CGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGL 405

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPF 405
           L AC+H GLV  G  YF   +++D   +KP   H+ C++DLL R GR  EA+  L  +P 
Sbjct: 406 LSACSHGGLVADGLDYFY--RMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPI 463

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
                 W +LLG C+ H +++ G  AA +++   P     YV+LSN  + AG+W +V  I
Sbjct: 464 QANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKI 523

Query: 466 RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           R+ M  +G+ + PG SWIEI   VH FV+GD +H   +EIY  L    E+++
Sbjct: 524 RKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMK 575



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 31/190 (16%)

Query: 144 FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
           F+ + ++++Y K   +  A  +FE   + NV ++T  +          +AL  F+ M   
Sbjct: 98  FLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRM--- 154

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
                        Q+G   + V   + +              A IA    AA+  G+  H
Sbjct: 155 ------------YQSGERPDRVTFSVIL--------------AAIAQMGAAAIDQGREIH 188

Query: 264 ACAVKFLGKL-DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
             A +  G L +V VG ++IS Y KCG ++D+   F++L  +N VTWNA++  Y  +GR 
Sbjct: 189 RYA-RISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRD 247

Query: 323 EEAIEFFERM 332
            EA+E F  M
Sbjct: 248 REALELFREM 257



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           F+ N LI  Y KCG +  +  +F+ +  RN+ TW   +  ++ NG   EA+ FF RM  +
Sbjct: 98  FLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQS 157

Query: 336 GIRPNGVTL 344
           G RP+ VT 
Sbjct: 158 GERPDRVTF 166


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 265/468 (56%), Gaps = 32/468 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+S   S    VFD + + N VS  ++I  F       EA  LF RM L  ++ ++  F 
Sbjct: 239 SKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFA 298

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +VI     +++++  KQLH    K G   ++ + +A++  Y K S I++A ++F      
Sbjct: 299 TVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF------ 352

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                  M+ G+                  +NVVSW A+I GY Q GR + A+NLF +M 
Sbjct: 353 ------CMMHGV------------------QNVVSWTAIISGYVQNGRTDRAMNLFCQMR 388

Query: 233 RE-GLVPNHSTLPCAIIA-AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           RE G+ PN  T    + A AA  A++  GK FH+C++K      + V ++L++ YAK G+
Sbjct: 389 REEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGN 448

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E +  VF +  +R++V+WN++I GYAQ+G G+++++ FE MR   +  +G+T +G++ A
Sbjct: 449 IESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISA 508

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C H GLV +G  YF     +   +   EHY+CMVDL SR+G  ++A + +  +PF  G  
Sbjct: 509 CTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGAT 568

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W+ LL  C++H NV+LGE AA ++++L P+D ++YV+LSN  + AG W   + +R+ M 
Sbjct: 569 IWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMD 628

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            K + +  G SWIE+K+K   F+ GD +H  +D IY  L   + ++++
Sbjct: 629 MKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKD 676



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 186/390 (47%), Gaps = 42/390 (10%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           +E  ++ T  V    +++      +VFDE+   NVVS T+++  + +    E+A+ LFS+
Sbjct: 124 VEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQ 183

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M L  I+P+ FTF +V+    A   +  G Q+H    K GL S +FVG++++++Y K   
Sbjct: 184 MQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSK--- 240

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
                              + M+          DA  +F  M +RN VSWN+MI G+   
Sbjct: 241 -------------------SLMV---------SDAKAVFDSMENRNAVSWNSMIAGFVTN 272

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G + EA  LF  M  EG+    +     I   ANI  +   K  H   +K     D+ + 
Sbjct: 273 GLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK 332

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NG 336
            +L+  Y+KC  ++D+  +F  +   +N+V+W A+I GY QNGR + A+  F +MR   G
Sbjct: 333 TALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEG 392

Query: 337 IRPNGVTLLGLLWACNH-TGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGR 392
           + PN  T   +L AC   T  VE+G  + S   ++   +   +     + +V + ++ G 
Sbjct: 393 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVS----SALVTMYAKRGN 448

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            + A E ++    D  +  W +++ G   H
Sbjct: 449 IESANE-VFKRQVDRDLVSWNSMISGYAQH 477



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 31/277 (11%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            Q+FDE P   +     ++  F++    +EA+ LF  +          +   V+     L
Sbjct: 46  QQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCL 105

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D  +GKQ+H    K G   +V VG++++D+Y+K  S+E                     
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVE--------------------- 144

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                     D  ++F EM  +NVVSW +++ GY Q G NE+A+ LF +M  EG+ PN  
Sbjct: 145 ----------DGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPF 194

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    +   A   A+  G   H   +K      +FVGNS+++ Y+K   + D+  VFD +
Sbjct: 195 TFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM 254

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
             RN V+WN++I G+  NG   EA E F RMR+ G++
Sbjct: 255 ENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 94/166 (56%)

Query: 195 KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254
           +LF E P + +   N ++  +S+  +N+EA+NLF+ + R G   + S+L C +     + 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
              +GK  H   +K     DV VG SL+  Y K  S+ED   VFD++  +N+V+W +++ 
Sbjct: 107 DRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLA 166

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           GY QNG  E+A++ F +M++ GI+PN  T   +L      G VEKG
Sbjct: 167 GYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKG 212


>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
          Length = 489

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 256/456 (56%), Gaps = 14/456 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF-------GSVI 115
           Q  ++     +VS T+ I    +     EA   FS M L  + P+  TF       G   
Sbjct: 15  QKLNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFS 74

Query: 116 PSSTALEDLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
             S AL DL     LH +A K+G  +++V VG+AIL +Y K S +++A  VF+   + N 
Sbjct: 75  SGSEALGDL-----LHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNS 129

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           V++ TMI G ++  + ++A+K+F +MP R+++SW AMI G+ + G +EEA+  F EM   
Sbjct: 130 VTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQIS 189

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ P++  +  A+ A  N+ AL  G   H   +    K +V V NSLI  Y +CG +E +
Sbjct: 190 GVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFA 249

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VFDK+ +R +V+WN+VI G+A NG   E++ +F +M+  G +P+ VT  G L AC+H 
Sbjct: 250 REVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHV 309

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           GLVE+G  YF   K +     + EHY C+VDL SR+GR +EA + +  +P  P      +
Sbjct: 310 GLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGS 369

Query: 415 LLGGCQIH-SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           LL  C+ H +N  L E   + +  ++ +  S+YV+LSN  +  GKW+  S +RR+MK  G
Sbjct: 370 LLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVILSNMYAADGKWEGASQMRRKMKGLG 429

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           + + PG S IEI    HVF+ GD  H    +I  VL
Sbjct: 430 LKKQPGFSSIEIDDCTHVFMAGDSAHVETADIREVL 465



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 123/279 (44%), Gaps = 44/279 (15%)

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           + ++   +  ++   +     +VSW + I   ++ GR  EA   F +M   G+ PNH T 
Sbjct: 4   ITRKHHADPKIQKLNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITF 63

Query: 244 PCAIIAAANIA--ALGMGKSFHACAVKFLG--KLDVFVGNSLISFYAKCGSMEDSLLVFD 299
              +    + +  +  +G   H  A K LG  +  V VG +++  Y+K   ++ + LVFD
Sbjct: 64  IALLSGCGDFSSGSEALGDLLHGYACK-LGHDRTHVMVGTAILGMYSKHSRVKKARLVFD 122

Query: 300 KLTERNIVTWNAVICGYAQNGR-------------------------------GEEAIEF 328
            + ++N VTWN +I GY +NG+                                EEA+ +
Sbjct: 123 YMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAW 182

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVD 385
           F  M+I+G++P+ V ++  L AC + G +  G   + Y      ++   +       ++D
Sbjct: 183 FREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNS----LID 238

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
           L  R G  + A+E ++D      +  W +++ G   + N
Sbjct: 239 LYCRCGCVEFARE-VFDKMEKRTVVSWNSVIVGFAANGN 276



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 81/207 (39%), Gaps = 30/207 (14%)

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           +SF  +    +  +   ++ T   IV+W + I    +NGR  EA + F  MR+ G+ PN 
Sbjct: 1   VSFITRKHHADPKIQKLNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNH 60

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--------------MVDLL 387
           +T + LL  C            FS        +L    YAC              ++ + 
Sbjct: 61  ITFIALLSGCGD----------FSSGSEALGDLLHG--YACKLGHDRTHVMVGTAILGMY 108

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447
           S+  R K+A+  ++D   D     W  ++ G   +  V   + A +    +   D+ S+ 
Sbjct: 109 SKHSRVKKAR-LVFDYMEDKNSVTWNTMIDGYMRNGQV---DNAVKMFDKMPERDLISWT 164

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGM 474
            + N     G  +      REM+  G+
Sbjct: 165 AMINGFVKKGFHEEALAWFREMQISGV 191


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 261/458 (56%), Gaps = 5/458 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTAL 121
           ++FDE+   + VS   +I  + +   +E+AI  F  M    N +P E T  S + + TAL
Sbjct: 299 KLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTAL 358

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           ++L LG ++H +  K  L     + +A+LD+Y K   +  A  +F++    NV+ +T+MI
Sbjct: 359 KNLELGDEIHNYVRK-ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMI 417

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G +      +A  LF + P R+VV W AMI GY Q    ++AV LF EM  + + P+  
Sbjct: 418 SGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKF 477

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   +   A + AL  GK  H    +    +DV VG +LI  Y+KCG ++ SL +F +L
Sbjct: 478 TVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYEL 537

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +++  +W ++ICG A NG+  EA+  F  M   G +P+ +T +G+L AC+H GLVE+G 
Sbjct: 538 EDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGR 597

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG---IGFWKALLGG 418
            +F+  K       K EHY C++DLL R+G   EA+E + ++P +     +  + ALL  
Sbjct: 598 RFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSA 657

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+IH+NV++GE  A+++  ++  D S + +L+N  +   +W++   +RR+MKE G+ ++P
Sbjct: 658 CRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMP 717

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           GCS IE+   VH F+ GD +H    EI ++L   T Q+
Sbjct: 718 GCSLIEVDGIVHEFLVGDPSHPEMMEICSMLNRVTGQL 755



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 214/478 (44%), Gaps = 79/478 (16%)

Query: 9   RSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEV 68
           R+  S+++L ++ S      +E  + ++ KL   A   DS S G+         ++F+ V
Sbjct: 151 RNCKSMDQLKQIQSQIFRIGLEGDRDTINKL--MAFCADS-SLGN----LRYAEKIFNYV 203

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
            D ++     ++  +AK+    + + LF ++    + P  FT+  V+ +   L D+  G+
Sbjct: 204 QDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGE 263

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++  +  K G+  + +V ++++D+Y +LS++E A                          
Sbjct: 264 KVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAK------------------------- 298

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLPCAI 247
                 KLF EM  R+ VSWN MI GY +  R E+A+N F EM +EG   P+ +T+   +
Sbjct: 299 ------KLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTL 352

Query: 248 IAAANIAALGMGKSFHACAVKFLG---KLD---------------------------VFV 277
            A   +  L +G   H    K LG   ++D                           V  
Sbjct: 353 SACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVIC 412

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
             S+IS Y  CG + ++  +FDK   R++V W A+I GY Q    ++A+  F  M+I  +
Sbjct: 413 WTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRV 472

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +P+  T++ LL  C   G +E+G   + Y  + ++    ++       ++++ S+ G   
Sbjct: 473 KPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVG----TALIEMYSKCGCVD 528

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
           ++ E  Y+L  D     W +++ G  ++      L  F+    +   P+D++   +LS
Sbjct: 529 KSLEIFYELE-DKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLS 585



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 132/281 (46%), Gaps = 11/281 (3%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A K+F  +   ++  +N M+  Y++ G   + + LF ++  +GL P+  T P  + A   
Sbjct: 196 AEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGC 255

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           +  +  G+      VK    LD +V NSLI  Y +  ++E++  +FD++T R+ V+WN +
Sbjct: 256 LRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVM 315

Query: 313 ICGYAQNGRGEEAIEFFERMRINGI-RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           I GY +  R E+AI  F  M+  G  +P+  T++  L AC     +E G    +  + E 
Sbjct: 316 ISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKEL 375

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF- 430
               + ++   ++D+ ++ G    A+    ++     I  W +++ G      +  G+  
Sbjct: 376 GFTTRIDN--ALLDMYAKCGCLNIARNIFDEMSMKNVI-CWTSMISG-----YINCGDLR 427

Query: 431 AARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            AR +    P  DV  +  + N       +D+   + REM+
Sbjct: 428 EARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQ 468


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 162/473 (34%), Positives = 256/473 (54%), Gaps = 34/473 (7%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL--NIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           N+ +   ++  F++ + +   I  F+  L+L     P E+TF SV+ +   L  +  G++
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +H + TK G +SN+FV ++++DLY K+     A ++F++    +VVS+ T+I G      
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF--------------------- 228
            + A  +F  M  +N+VSW+ MI GY++ G  EEA  LF                     
Sbjct: 209 VDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQN 268

Query: 229 ------IEMLRE-----GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
                 IE+ R+     GL PN  TL   + A A++ AL +GK  H    +   ++ +F+
Sbjct: 269 EKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFL 328

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           GN+L   YAKCG + ++  VF ++ ER++++W+ +I G A  G   EA  FF  M  +G+
Sbjct: 329 GNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGL 388

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            PN ++ +GLL AC H GLV+KG  YF           K EHY C+VDLLSR+GR  +A+
Sbjct: 389 EPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAE 448

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
             +  +P  P +  W ALLGGC+I+ + E GE    RIL LD     S V L+N  +  G
Sbjct: 449 SLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMG 508

Query: 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           + D+ ++ R  M++    + PGCSWIEI + V+ F  GD +H  +  IY+++R
Sbjct: 509 RLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIR 561


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 256/457 (56%), Gaps = 37/457 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  N VS   +I  +A+     EA+ LF+RM+   +  ++ +  + + +   L  
Sbjct: 218 VFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGC 277

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+ G ++H    ++GL SNV V +A++ +Y K   ++ A+ VF+                
Sbjct: 278 LDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFD---------------- 321

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          E+  R  VSWNAMI G +Q G +E+AV LF  M  E + P+  TL
Sbjct: 322 ---------------ELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTL 366

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I A A+I+     +  H  +++     DV+V  +LI  YAKCG +  + ++F+   E
Sbjct: 367 VSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARE 426

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+++TWNA+I GY  +G G+ A+E FE M+  GI PN  T L +L AC+H GLV++G  Y
Sbjct: 427 RHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREY 486

Query: 364 FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F+  K +   +PGM   EHY  MVDLL R+G+  EA  F+  +P DPG+  + A+LG C+
Sbjct: 487 FTSMKEDYGLEPGM---EHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACK 543

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H NVEL E +A++I  L P++   +V+L+N  + A  W +V+ +R  M++ G+ + PG 
Sbjct: 544 LHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGW 603

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           S I++K+++H F +G  NH    EIY+ L    E+I+
Sbjct: 604 SIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIK 640



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 199/421 (47%), Gaps = 47/421 (11%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPS 117
           +   +VFD +P  + V+   ++  +A+      A+ +  RM      RP   T  SV+P+
Sbjct: 111 ADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPA 170

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                 L   ++ HA+A + GL+  V V +AILD Y K                      
Sbjct: 171 CANARALAACREAHAFAIRSGLEELVNVATAILDAYCK---------------------- 208

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               CG ++  R      +F  MP +N VSWNAMI GY+Q G + EA+ LF  M+ EG+ 
Sbjct: 209 ----CGDIRAARV-----VFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
               ++  A+ A   +  L  G   H   V+     +V V N+LI+ Y+KC  ++ +  V
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA-CNHTGL 356
           FD+L  R  V+WNA+I G AQNG  E+A+  F RM++  ++P+  TL+ ++ A  + +  
Sbjct: 320 FDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDP 379

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           ++  + +    +L     L  + Y    ++D+ ++ GR   A+  L++   +  +  W A
Sbjct: 380 LQARWIHGYSIRLH----LDQDVYVLTALIDMYAKCGRVNIAR-ILFNSARERHVITWNA 434

Query: 415 LLGGCQIH----SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
           ++ G   H    + VEL  F   + + + P + +   +LS A S AG  D        MK
Sbjct: 435 MIHGYGSHGFGKAAVEL--FEEMKSIGIVPNETTFLSVLS-ACSHAGLVDEGREYFTSMK 491

Query: 471 E 471
           E
Sbjct: 492 E 492



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 32/270 (11%)

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           A+  F  M      P   TF S++    A  DL  G+ +HA     G+ S     +A+ +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
           +Y K     +A RVF+                                MP R+ V+WNA+
Sbjct: 103 MYAKCRRPADARRVFD-------------------------------RMPVRDRVAWNAL 131

Query: 212 IGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           + GY++ G    A+ + + M   EG  P+  TL   + A AN  AL   +  HA A++  
Sbjct: 132 VAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSG 191

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            +  V V  +++  Y KCG +  + +VFD +  +N V+WNA+I GYAQNG   EA+  F 
Sbjct: 192 LEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFN 251

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           RM   G+    V++L  L AC   G +++G
Sbjct: 252 RMVEEGVDVTDVSVLAALQACGELGCLDEG 281


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 157/474 (33%), Positives = 247/474 (52%), Gaps = 35/474 (7%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           AI    V CG           VF+++ + N V+ T I+  + +     +A+ LF++M+  
Sbjct: 151 AISNMYVKCG----WLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNE 206

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            +   E+ F  V+ +   LE+LN G+Q+H    K+GL+S V VG+ ++D Y+K S++E A
Sbjct: 207 GVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESA 266

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
           T+ FE    P                               N VSW+A+I GY Q G  E
Sbjct: 267 TKAFEWISEP-------------------------------NDVSWSALITGYCQMGEFE 295

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+  F  +    +  N  T      A + +A    G   HA A+K          +++I
Sbjct: 296 EALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMI 355

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + Y++CG ++ +  VF+ + + + V W A+I GYA  G   EA++ F RM+  G+RPN V
Sbjct: 356 TMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAV 415

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T + +L AC+H+GLV +G  Y              +HY CMVD+ SR+G  +EA E +  
Sbjct: 416 TFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRS 475

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +PF P    WK LLGGC  + N+E+GE AA  +  LDPED + Y+++ N  +  GKW   
Sbjct: 476 MPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEA 535

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           +N+R+ M E+ + +   CSWI +K KVH F+ GD++H   +EIY+ L +  + +
Sbjct: 536 ANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSV 589



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 178/376 (47%), Gaps = 39/376 (10%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS +D      +VFDE+ + N+VS  TII  +A+   +++   +FS ML L  +P+  T
Sbjct: 58  CGSLAD----ARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGST 113

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           +   + S      L +GKQ+H+ A + GL SN  V +AI ++Y+K               
Sbjct: 114 YIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVK--------------- 158

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                      CG L     E A  +F++M  +N V+W  ++ GY+Q  R  +A+ LF +
Sbjct: 159 -----------CGWL-----EGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAK 202

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M+ EG+  +       + A A +  L  G+  H   VK   + +V VG  L+ FY KC +
Sbjct: 203 MVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSN 262

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E +   F+ ++E N V+W+A+I GY Q G  EEA++ FE +R   +  N  T   +  A
Sbjct: 263 LESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQA 322

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C+       G    + A      ++  +H  + M+ + SR GR   A      +  DP  
Sbjct: 323 CSALADFNSGAQ--AHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESID-DPDA 379

Query: 410 GFWKALLGGCQIHSNV 425
             W A++ G     N 
Sbjct: 380 VAWTAIIAGYAYQGNA 395



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 143/339 (42%), Gaps = 37/339 (10%)

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           I  S  ++  +  +   ++ L  G+  H    +       F+ +++L +Y K  S+ +A 
Sbjct: 6   ISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADAR 65

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           +VF++    N+VS+                               N +I  Y++ G  ++
Sbjct: 66  KVFDEMRERNLVSW-------------------------------NTIISAYAENGVFDK 94

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
              +F  ML     PN ST    + +  N + L +GK  H+ A++     +  V  ++ +
Sbjct: 95  GFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISN 154

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y KCG +E + LVF+K++E+N V W  ++ GY Q  R  +A+  F +M   G+  +   
Sbjct: 155 MYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYV 214

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYD 402
              +L AC   GL E  +       +   G+         +VD   +    + A +  ++
Sbjct: 215 FSIVLKAC--AGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATK-AFE 271

Query: 403 LPFDPGIGFWKALLGG-CQIHSNVE-LGEFAARRILALD 439
              +P    W AL+ G CQ+    E L  F + R  ++D
Sbjct: 272 WISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVD 310



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%)

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   G+  +  +  C   A   I +L  G+ FH    + +     F+ NS++  Y KCGS
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           + D+  VFD++ ERN+V+WN +I  YA+NG  ++    F  M     +PNG T +G L
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFL 118


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 152/452 (33%), Positives = 264/452 (58%), Gaps = 44/452 (9%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           +VVS T +I  + +    ++A+ LFS M    ++P+ FT+ +++    A+       ++H
Sbjct: 370 SVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAV----FISEIH 425

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   + +  VG+A+LD ++K+ +I                                
Sbjct: 426 AEVIKTNYEKSSSVGTALLDAFVKIGNIS------------------------------- 454

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA- 250
           DA+K+F+ +  ++V++W+AM+ GY+Q G  EEA  +F ++ REG+ PN  T  C+II A 
Sbjct: 455 DAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTF-CSIINAC 513

Query: 251 -ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A  A++  GK FHA A+K      + V +SL++ YAK G++E +  +F +  ER++V+W
Sbjct: 514 TAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSW 573

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS---Q 366
           N++I GYAQ+G+ ++A+E FE M+   +  + +T +G++ AC H GLV KG +YF+    
Sbjct: 574 NSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMIN 633

Query: 367 AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
               +P M   EHY+CM+DL SR+G   +A + +  +PF P    W+ +L   ++H N+E
Sbjct: 634 DHHINPTM---EHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIE 690

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           LG+ AA +I++L+P+  ++YV+LSN  + AG W    N+R+ M ++ + + PG SWIE+K
Sbjct: 691 LGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVK 750

Query: 487 SKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           +K + F+ GD +H ++D IY+ L     ++R+
Sbjct: 751 NKTYSFLAGDLSHPLSDHIYSKLSELNTRLRD 782



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 144/290 (49%), Gaps = 31/290 (10%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            Q+FD+ P  ++     ++ R+++    +EA++LF  +    + P  +T   V+      
Sbjct: 56  QQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGS 115

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            +  +G+Q+H    K GL  ++ VG++++D+Y K  ++ +  RVF++  + +V       
Sbjct: 116 FNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDV------- 168

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                                   VSWN+++ GYS    N++   LF  M  EG  P++ 
Sbjct: 169 ------------------------VSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYY 204

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   I A AN  A+ +G   HA  VK   + +  V NSLIS  +K G + D+ +VFD +
Sbjct: 205 TVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNM 264

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             ++ V+WN++I G+  NG+  EA E F  M++ G +P   T   ++ +C
Sbjct: 265 ENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSC 314



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 163/357 (45%), Gaps = 38/357 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE+ D +VVS  +++  ++     ++   LF  M +   RP  +T  +VI +     
Sbjct: 158 RVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQG 217

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            + +G Q+HA   K+G ++   V ++++ +  K                           
Sbjct: 218 AVAIGMQIHALVVKLGFETERLVCNSLISMLSK--------------------------S 251

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G+L+     DA  +F  M +++ VSWN+MI G+   G++ EA   F  M   G  P H+T
Sbjct: 252 GMLR-----DARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHAT 306

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               I + A++  LG+ +  H   +K     +  V  +L+    KC  ++D+  +F  + 
Sbjct: 307 FASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMH 366

Query: 303 E-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             +++V+W A+I GY QNG  ++A+  F  MR  G++PN  T   +L    H   + + +
Sbjct: 367 GVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL-TVQHAVFISEIH 425

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +   +   E    +       ++D   + G   +A + +++L     +  W A+L G
Sbjct: 426 AEVIKTNYEKSSSVG----TALLDAFVKIGNISDAVK-VFELIETKDVIAWSAMLAG 477



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 141/290 (48%), Gaps = 18/290 (6%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A +LF + P R++   N ++  YS+  + +EA++LF+ + R GL P+  T+ C +   A 
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
                +G+  H   VK      + VGNSL+  Y K G++ D   VFD++ +R++V+WN++
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
           + GY+ N   ++  E F  M++ G RP+  T+  ++ A  + G V  G      A +   
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQI--HALVVKL 232

Query: 373 GMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
           G  + E   C  ++ +LS+SG  ++A+    ++     +  W +++ G  I+        
Sbjct: 233 G-FETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVS-WNSMIAGHVINGQ------ 284

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
                  L+  +  + + L+ A      + +V      +KE G+ RV  C
Sbjct: 285 ------DLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHC 328


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/497 (33%), Positives = 280/497 (56%), Gaps = 18/497 (3%)

Query: 37  QKLETPAIRTDSVSCGSESDKFSSVH----------QVFDEVPDLNVVSATTIIGRFAKQ 86
           +KL    I+T    C S S+   +++           +F+++P  + +S  +I+    + 
Sbjct: 23  KKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQA 82

Query: 87  HHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFV 145
           +     + +F  M   + ++P  + F  ++ +   L  +  GKQ+HA      +  +  V
Sbjct: 83  NLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVV 142

Query: 146 GSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
            S+++D+Y K    +    VF+   + N +S+T MI G  +  R  DA++LFQ+MP +N+
Sbjct: 143 KSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL 202

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAIIAAANIAALGMGKSFHA 264
           +SW A+I G  Q+G   ++  LF+EM  +G+ + +   L   I A+AN+A LG+GK  H 
Sbjct: 203 LSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIH- 261

Query: 265 CAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
           C V  LG +  +FV N+L+  YAKC  +  +  +F ++ +R+IV+W ++I G AQ+G  E
Sbjct: 262 CLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAE 321

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYA 381
           EA+  + RM   G++PN VT +GL++AC+H GLV KG  YF  + ++D G + P  +HY 
Sbjct: 322 EALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKG-RYFFNSMIKDYG-INPSLQHYT 379

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441
           C++DLLSRSG  +EA+  +  +PF P    W ALL  C  H N  +G   A  +L+L PE
Sbjct: 380 CLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPE 439

Query: 442 DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHM 501
           D S+Y++LSN  + A  W++VS +RR M    + + PG S I +  +  VF+ G+ +H  
Sbjct: 440 DPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPA 499

Query: 502 NDEIYAVLRSCTEQIRE 518
            +EI+ +L     ++++
Sbjct: 500 KEEIFGLLEELDAEMKK 516



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 41/236 (17%)

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           +GK+LH    K G+     + + ++++Y K                          CGL+
Sbjct: 21  IGKKLHCHIIKTGIDQCKSLSNNLINMYGK--------------------------CGLI 54

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLP 244
                +DAL LF ++PHR+ +SW +++   +Q       +++F  M ++ GL P+H    
Sbjct: 55  -----QDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFA 109

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
           C + A A + A+  GK  HA  +      D  V +SL+  YAKCG  +   +VFD ++ +
Sbjct: 110 CLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSK 169

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           N ++W A+I GYAQ+GR  +AI+ F++M +  +         L W    +GLV+ G
Sbjct: 170 NSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL---------LSWTALISGLVQSG 216


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/481 (33%), Positives = 263/481 (54%), Gaps = 49/481 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--------- 103
           S+    +   ++FDE+P+ NVVS T++I  + +     EA++LF   LL++         
Sbjct: 132 SKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVG 191

Query: 104 --IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
             +       G VI +   +   ++ + +H  A K G +  + VG+ ++D Y K      
Sbjct: 192 VGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAK------ 245

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
                               CG +   R     K+F  M   +V SWN++I  Y+Q G +
Sbjct: 246 --------------------CGEISVSR-----KVFDGMEETDVCSWNSLIAVYAQNGLS 280

Query: 222 EEAVNLFIEMLREGLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            EA +LF +M++ G V  N  TL   ++A A+  AL +GK  H   VK   + ++ VG S
Sbjct: 281 VEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTS 340

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           ++  Y KCG +E +   FD+L  +N+ +W  ++ GY  +G G+EA++ F  M   GI+PN
Sbjct: 341 IVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPN 400

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAK 397
            +T + +L AC+H GL+++G+ +F++ K E   +PG+   EHY+CMVDLL R+G  KEA 
Sbjct: 401 YITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGI---EHYSCMVDLLGRAGYLKEAY 457

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
             + ++   P    W +LLG C+IH NVELGE +AR++  LDP +   YV+LSN  + AG
Sbjct: 458 GLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAG 517

Query: 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +WD+V  +R  MK  G+ + PG S +E K +VHVF+ GD+ H  +++IY  L     +++
Sbjct: 518 RWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQ 577

Query: 518 E 518
           E
Sbjct: 578 E 578



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 184/363 (50%), Gaps = 33/363 (9%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           V   +V S  +II  FA+     +A+Y FS M  L++ P+  TF   I S ++L DL  G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           KQ+H  A   G  S++FV SA++D+Y K   + +A ++F++    NVVS+T+MI G ++ 
Sbjct: 106 KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQN 165

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
           ER  +A+ LF+E    +   ++                    E++  G+  +   L C I
Sbjct: 166 ERAREAVFLFKEFLLVDETDYD--------------------EIVGVGVGVDSVLLGCVI 205

Query: 248 IAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            A A +    + +  H  AVK  F G L   VGN+L+  YAKCG +  S  VFD + E +
Sbjct: 206 SACARVCVKSVTECVHGLAVKKGFEGCLA--VGNTLMDAYAKCGEISVSRKVFDGMEETD 263

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           + +WN++I  YAQNG   EA   F  M   G +R N VTL  +L AC H+G ++ G    
Sbjct: 264 VCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIH 323

Query: 365 SQA---KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            Q    +LED  ++       +VD+  + GR + A++  +D      +  W  ++ G  +
Sbjct: 324 DQVVKMELEDNLVVGTS----IVDMYCKCGRVEMARK-AFDRLKRKNVKSWTVMVAGYGM 378

Query: 422 HSN 424
           H +
Sbjct: 379 HGH 381



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 17/246 (6%)

Query: 11  SLSLNKLSKLHS--LAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEV 68
           +LS   L+  HS  L     I  Q   ++  +   + T  V    +  +     + FD +
Sbjct: 302 TLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRL 361

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
              NV S T ++  +    H +EA+ +F  M+   I+P+  TF SV+    A     L K
Sbjct: 362 KRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVL---AACSHAGLLK 418

Query: 129 QLHAWATKVGLQSNVFVG----SAILDLYIKLSSIEEATRVFEDTH-NPNVVSYTTMI-- 181
           +   W  K+  + +V  G    S ++DL  +   ++EA  + ++    P+ + + +++  
Sbjct: 419 EGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGA 478

Query: 182 CGLLKRERFED--ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-- 237
           C + K     +  A KLF+  P  N   +  +   Y+  GR ++   + I M   GL+  
Sbjct: 479 CRIHKNVELGEISARKLFKLDP-SNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKT 537

Query: 238 PNHSTL 243
           P +S +
Sbjct: 538 PGYSIV 543


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/477 (33%), Positives = 260/477 (54%), Gaps = 43/477 (9%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEE-AIYLFSRMLLLNIRPSEFTF 111
           ++S    S  + F  VPD NV++ TT+I   A+  +Y E  + LF  ML+  + P+EFT 
Sbjct: 225 AKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTL 284

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            SV+       DLNLGKQ+ A+  K+G Q+N+ V ++ + LY                  
Sbjct: 285 TSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLY------------------ 326

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT-----------GR 220
                        L++   ++A++ F+EM   ++++WNAMI GY+Q             R
Sbjct: 327 -------------LRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSR 373

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
             +A+ +F  + R  + P+  T    +   +++ AL  G+  HA  +K     DV V ++
Sbjct: 374 GFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSA 433

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L++ Y KCG +ED+   F +++ R +VTW ++I GY+Q+GR +EAI+ FE MR  G+RPN
Sbjct: 434 LVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPN 493

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            +T + +L AC++ GL EK   YF   K E       +HY CMVD+  R GR  +A  F+
Sbjct: 494 EITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFI 553

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
               F+P    W +L+ GC+ H N+EL  +AA R++ L P+ + +YV+L N      +W 
Sbjct: 554 RRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWH 613

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +V+ +R+ MK++G+  +   SWI IK KV+ F   D+ H ++DE+Y +L +  E+ +
Sbjct: 614 DVARVRKLMKQEGLGVLMDRSWITIKDKVYFFKANDKTHELSDELYQLLENLLEKAK 670



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/484 (22%), Positives = 223/484 (46%), Gaps = 55/484 (11%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + LL +C  + SL     LH     ++++T  ++   + T  +    + CG+  D  S  
Sbjct: 82  VPLLHVCVETGSLGGARALH----GHMVKTGTSADMFVATSLVNA-YMRCGASQDARS-- 134

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
             +FD++P+ NVV+ T +I  +       EA+ +F  ML     PS +T G+++ + +A 
Sbjct: 135 --LFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSAS 192

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            + +LG Q+H +  K    S   +G+++  +Y K  S+E A R F    + NV+++TTMI
Sbjct: 193 NNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMI 252

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               + E +                               E  + LF++ML +G++PN  
Sbjct: 253 SACAEDENY------------------------------TELGLTLFLDMLMDGVLPNEF 282

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   +        L +GK   A   K   + ++ V NS +  Y + G  ++++  F+++
Sbjct: 283 TLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEM 342

Query: 302 TERNIVTWNAVICGYAQ-----------NGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            + +I+TWNA+I GYAQ             RG +A++ F  ++ + ++P+  T   +L  
Sbjct: 343 DDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSV 402

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C+    +E+G    +Q  ++   +      + +V++ ++ G  ++A +   ++     + 
Sbjct: 403 CSSMMALEQGEQIHAQT-IKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVT 461

Query: 411 FWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
            W +++ G   H   +  +  F   R   + P ++ ++V + +A S AG  +   +    
Sbjct: 462 -WTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEI-TFVCVLSACSYAGLAEKAEHYFDM 519

Query: 469 MKEK 472
           MKE+
Sbjct: 520 MKEE 523



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 15/232 (6%)

Query: 207 SWNAMIGGYSQTGRNEEA------VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
           +WN      +Q G   EA      V   + MLREG     +     +       +LG  +
Sbjct: 39  NWNGRSIQAAQNGSTMEAPLRPLDVGEAMAMLREGKTVQSAMYVPLLHVCVETGSLGGAR 98

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
           + H   VK     D+FV  SL++ Y +CG+ +D+  +FD++ E+N+VTW A+I GY  N 
Sbjct: 99  ALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNS 158

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWAC---NHTGLVEKGYSYFSQAKLEDPGMLKP 377
           +  EA+E F  M   G  P+  TL  +L AC   N+  L  + + Y    K     +   
Sbjct: 159 QLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGY--TIKYRALSITSI 216

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN-VELG 428
            +  C   + ++SG  + A      +P D  +  W  ++  C    N  ELG
Sbjct: 217 GNSLC--RMYAKSGSLESAMRAFRMVP-DKNVITWTTMISACAEDENYTELG 265


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/519 (31%), Positives = 273/519 (52%), Gaps = 46/519 (8%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C  ++ L + ++ K+H L   + +E             I +  V+C  +          F
Sbjct: 144 CAIKACLDVLEIKKIHGLLFKFGLELDVF---------IGSALVNCYLKFGLMEHAQVAF 194

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           +E+P  +VV    ++  +A+   +E  +  F RM   ++ PS FT    +     + DLN
Sbjct: 195 EELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLN 254

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
            G+ +H +A K+G  S V V ++++D+Y K   IE                         
Sbjct: 255 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIE------------------------- 289

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                 DAL++F+ M  +++ SWN+++  + Q G ++  + L   ML  G+ P+  T+  
Sbjct: 290 ------DALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343

Query: 246 AIIAAANIAALGMGKSFHA-CAVKFLGKL-----DVFVGNSLISFYAKCGSMEDSLLVFD 299
            + A +++AAL  G+  H    V  LGK      DV + N++I  YAKCGSM D+ LVF+
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE 403

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           +++ +++ +WN +I GY  +G G EA+E F RM    ++P+ VT +G+L AC+H G V +
Sbjct: 404 RMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQ 463

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G ++  Q K +       EHY C++D+L R+G+  EA E    +P +     W+ALL  C
Sbjct: 464 GRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAAC 523

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H +  L E AA+R+  L+PE   SYV++SN     G+++ V  +R  M+++ + + PG
Sbjct: 524 RLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPG 583

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           CSWIE+K+ VHVFV+ DR H     IYA L S T ++ E
Sbjct: 584 CSWIELKNGVHVFVSADRAHPEAXSIYAGLNSLTARLXE 622



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 195/418 (46%), Gaps = 51/418 (12%)

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           D   ++NV +   II  F      EE    + +M    + P +FTF   I +   + ++ 
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI- 155

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
             K++H    K GL+ +VF+GSA+++ Y+K   +E A   FE                  
Sbjct: 156 --KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFE------------------ 195

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                        E+P R+VV WNAM+ GY+Q G+ E  +  F  M  E +VP+  T+  
Sbjct: 196 -------------ELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTG 242

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            +   A +  L  G+  H  A+K      V V NSLI  Y KC  +ED+L +F+ + E++
Sbjct: 243 XLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKD 302

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YS 362
           I +WN+++  + Q G  +  +   +RM   GI+P+ VT+  +L AC+H   +  G   + 
Sbjct: 303 IFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHG 362

Query: 363 YFSQAKLEDPG------MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           Y   + L   G      +LK      ++D+ ++ G  ++A   +++   +  +  W  ++
Sbjct: 363 YMIVSGLGKDGKDIDDVLLK----NAVIDMYAKCGSMRDA-HLVFERMSNKDVASWNIMI 417

Query: 417 GGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            G  +H   N  L  F+    + L P++V ++V + +A S AG      N   +MK K
Sbjct: 418 MGYGMHGYGNEALEMFSRMCEVQLKPDEV-TFVGVLSACSHAGFVSQGRNFLVQMKSK 474


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 266/461 (57%), Gaps = 9/461 (1%)

Query: 63  QVFDEVPD--LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
           +VFDE+P    + V  TT++G F + +  +EA+ +F  M    ++P E T   +      
Sbjct: 71  KVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCAR 130

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L D+ +G Q H    K+GL       +A++D+Y K   + EA RVF +    +VVS+T +
Sbjct: 131 LGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVI 190

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPN 239
           + G+++ E   +   +F EMP RN V+W  MI GY  +G  +E+  L  EM+ +  +  N
Sbjct: 191 LDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELN 250

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGK-LDVFVGNSLISFYAKCGSMEDSLLVF 298
           + TL   + A +    L MG+  HA A+K   K L++ VG +++  YAKCG +  +   F
Sbjct: 251 YVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFF 310

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
            K+ +RN+V+WNA++ G A +G G  A++ F +M     +P+ VT   +L AC+H+GLV+
Sbjct: 311 KKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQM-FKEAKPDDVTFTSVLSACSHSGLVD 369

Query: 359 KGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +G  YF    LE    + P  EHYACMVDLL R+GR +EA+  + ++P  P      +LL
Sbjct: 370 QGCFYF--GNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLL 427

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C IH  ++LGE   + ++ LDP++   +++LSN  ++AGK +  +++R+ +K++G+ +
Sbjct: 428 GSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKK 487

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           VPG S I +  +VH F  GD++H    E+Y +L     ++R
Sbjct: 488 VPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLR 528



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 12/177 (6%)

Query: 249 AAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL--TER 304
           + A  ++L +G+  HA  +     G  + F+ N+L+ FYA CG    +  VFD++  + +
Sbjct: 22  SCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPHSHK 81

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-YSY 363
           + V W  ++  + ++   +EA+  F  MR  G++P+ VTL+ L   C   G V  G   +
Sbjct: 82  DTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGH 141

Query: 364 FSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               K+   G+ K    AC  ++D+ ++SG   EA+   Y++     +  W  +L G
Sbjct: 142 GCMVKMGLGGVEK----ACNAVMDMYAKSGLMGEARRVFYEMKGQSVVS-WTVILDG 193


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 255/439 (58%), Gaps = 34/439 (7%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P+  +VS T I+  +A+     EA+ +FS+M  ++++P      SV+ + T L+DL  G
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQG 241

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           + +HA   K+GL++         DL I L+++                      CG +  
Sbjct: 242 RSIHASVMKMGLETEP-------DLLISLNTMYAK-------------------CGQVAT 275

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
            +      LF +M   N++ WNAMI GY++ G  ++A++LF EM+ + + P+  ++  AI
Sbjct: 276 AKI-----LFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAI 330

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A A + +L   +       +   + DVF+ ++LI  +AKCGS+E +  VFD+  +R++V
Sbjct: 331 SACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVV 390

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
            W+A+I GY  +G+  EAI  +  M  +G+ PN VT LGLL ACNH+G+V +G+ +F+  
Sbjct: 391 VWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFN-- 448

Query: 368 KLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           ++ D  +  + +HYAC++DLL R+G   +A E +  +P  PG+  W ALL  C+ H +VE
Sbjct: 449 RMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE 508

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           LG++AA+++ ++DP +   YV LSN  + A  WD V+ +R  MKEKG+ +  GCSW+E++
Sbjct: 509 LGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVR 568

Query: 487 SKVHVFVTGDRNHHMNDEI 505
            ++  F  GD++H   +EI
Sbjct: 569 GRLEGFRVGDKSHPRYEEI 587



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 196/404 (48%), Gaps = 39/404 (9%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  +   S     +   QVFD++P   V     II  +++ +H+++A+ ++S+M L  + 
Sbjct: 57  TKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS 116

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P  FTF  ++ +   L  L +G+ +HA   ++G +++VFV + ++ LY K   +  A  V
Sbjct: 117 PDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTV 176

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           FE               GL               +P R +VSW A++  Y+Q G   EA+
Sbjct: 177 FE---------------GL--------------PLPERTIVSWTAIVSAYAQNGEPVEAL 207

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            +F +M +  + P+   L   + A   +  L  G+S HA  +K   + +  +  SL + Y
Sbjct: 208 EIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMY 267

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           AKCG +  + ++FDK+   N++ WNA+I GYA+NG  ++AI+ F  M    +RP+ +++ 
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISIT 327

Query: 346 GLLWACNHTGLVEKGY---SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
             + AC   G +E+      Y S++   D   +     + ++D+ ++ G  + A+  ++D
Sbjct: 328 SAISACAQVGSLEQARWMDEYVSRSDYRDDVFIS----SALIDMFAKCGSVECARS-VFD 382

Query: 403 LPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVS 444
              D  +  W A++ G  +H      +  + A     + P DV+
Sbjct: 383 RTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVT 426



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 147/315 (46%), Gaps = 40/315 (12%)

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           S+  + S+I SST    L   +Q+HA    +GLQ + F+ + ++        I  A +VF
Sbjct: 20  SDSFYASLIDSSTHKAQL---RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVF 76

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
           +D   P V  +  +I G  +   F+DAL ++ +M                Q  R      
Sbjct: 77  DDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKM----------------QLAR------ 114

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
                    + P+  T P  + A   ++ L MG+  HA   +   + DVFV N LI+ YA
Sbjct: 115 ---------VSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYA 165

Query: 287 KCGSMEDSLLVFD--KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           KC  +  +  VF+   L ER IV+W A++  YAQNG   EA+E F +MR   ++P+ V L
Sbjct: 166 KCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVAL 225

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           + +L A      +E+G S    A +   G+  +P+    +  + ++ G+   AK  L+D 
Sbjct: 226 VSVLNAFTCLQDLEQGRSI--HASVMKMGLETEPDLLISLNTMYAKCGQVATAK-ILFDK 282

Query: 404 PFDPGIGFWKALLGG 418
              P +  W A++ G
Sbjct: 283 MKSPNLILWNAMISG 297



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 18/245 (7%)

Query: 14  LNKLSKLHSLAPNYLIETQKASVQK--LETP-----AIRTDSVSCGSESDKFSSVHQVFD 66
           LN  + L  L     I    ASV K  LET      ++ T    CG    + ++   +FD
Sbjct: 229 LNAFTCLQDLEQGRSIH---ASVMKMGLETEPDLLISLNTMYAKCG----QVATAKILFD 281

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
           ++   N++    +I  +AK    ++AI LF  M+  ++RP   +  S I +   +  L  
Sbjct: 282 KMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQ 341

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
            + +  + ++   + +VF+ SA++D++ K  S+E A  VF+ T + +VV ++ MI G   
Sbjct: 342 ARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGL 401

Query: 187 RERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
             +  +A+ L++ M     H N V++  ++   + +G   E    F  M    + P    
Sbjct: 402 HGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQH 461

Query: 243 LPCAI 247
             C I
Sbjct: 462 YACII 466



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 7/207 (3%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           F+   LI   +  G +  +  VFD L    +  WNA+I GY++N   ++A+  + +M++ 
Sbjct: 54  FLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLA 113

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFK 394
            + P+  T   LL AC   GL       F  A++   G          ++ L ++  R  
Sbjct: 114 RVSPDSFTFPHLLKACG--GLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLG 171

Query: 395 EAKEFLYDLPF-DPGIGFWKALLGG-CQIHSNVELGE-FAARRILALDPEDVSSYVMLSN 451
            A+     LP  +  I  W A++    Q    VE  E F+  R + + P D  + V + N
Sbjct: 172 CARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKP-DCVALVSVLN 230

Query: 452 ALSVAGKWDNVSNIRREMKEKGMTRVP 478
           A +     +   +I   + + G+   P
Sbjct: 231 AFTCLQDLEQGRSIHASVMKMGLETEP 257


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/486 (33%), Positives = 264/486 (54%), Gaps = 39/486 (8%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T     GS     S    + +E   L+V++ + +I  +A++ H  EA+ +F +M L 
Sbjct: 305 AMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLY 364

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN-------VFVGSAILDLYIK 155
            + P+  T  S++    ++  L  GKQ HA+  K  L  N       + V + ++D+Y K
Sbjct: 365 GLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAK 424

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
             S   A  +F+                               E   +NVV+W  MIGGY
Sbjct: 425 CKSYRVARSIFDSI-----------------------------EGKDKNVVTWTVMIGGY 455

Query: 216 SQTGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           +Q G   +A+ LF ++ ++   L PN  TL CA++A A +  L +G+  HA A++   + 
Sbjct: 456 AQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENES 515

Query: 274 DV-FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           +V +VGN LI  Y+K G ++ +  VFD +  RN+V+W +++ GY  +GRGEEA+  F++M
Sbjct: 516 EVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQM 575

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
           +  G   +G+T L +L+AC+H+G+V++G  YF             EHYACMVDLL R+GR
Sbjct: 576 QKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGR 635

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
             EA E + ++  +P    W ALL   +IH+N+ELGE+AA ++  L  E+  SY +LSN 
Sbjct: 636 LNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNL 695

Query: 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
            + A +W +V+ IR  MK  G+ + PGCSWI+ K     F  GDR+H  +++IY +L   
Sbjct: 696 YANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDL 755

Query: 513 TEQIRE 518
            ++I++
Sbjct: 756 IKRIKD 761



 Score =  191 bits (484), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 208/404 (51%), Gaps = 40/404 (9%)

Query: 51  CGSESDKFSSVHQVFDEVPDL---NVVSATTIIGRFAKQHHYEEAIYLFSRM---LLLNI 104
           CG+  D     HQ+FDEV +    ++VS  +I+  + +      A+ +  RM     L +
Sbjct: 175 CGALDD----AHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKL 230

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           RP   T  +++P+  ++  L  GKQ+H ++ + GL  +VFVG+A++ +Y K S + EA +
Sbjct: 231 RPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANK 290

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGR 220
           VFE     +VVS+  M+ G  +   F+ AL LF+ M       +V++W+A+I GY+Q G 
Sbjct: 291 VFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGH 350

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL------- 273
             EA+++F +M   GL PN  TL   +   A++ AL  GK  HA  +K +  L       
Sbjct: 351 GFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKED 410

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKL--TERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           D+ V N LI  YAKC S   +  +FD +   ++N+VTW  +I GYAQ+G   +A++ F +
Sbjct: 411 DLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQ 470

Query: 332 M--RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-------C 382
           +  +   ++PN  TL   L AC   G +  G    + A       L+ E+ +       C
Sbjct: 471 IFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYA-------LRNENESEVLYVGNC 523

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           ++D+ S+SG    A+    ++     +  W +L+ G  +H   E
Sbjct: 524 LIDMYSKSGDIDAARAVFDNMKLRNVVS-WTSLMTGYGMHGRGE 566



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 195/431 (45%), Gaps = 79/431 (18%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSA-TTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           + CG+ ++  S + ++   +P  + V     +I R  K    ++ +  + +M  L   P 
Sbjct: 70  IECGASAEAVSLLQRL---IPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPD 126

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            +TF  V+ +   +  L  G  +HA     GL SNVF+ ++I+ +Y +  ++++A ++F+
Sbjct: 127 HYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFD 186

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           +               +L+R + ED            +VSWN+++  Y Q G++  A+ +
Sbjct: 187 E---------------VLER-KIED------------IVSWNSILAAYVQGGQSRTALRI 218

Query: 228 FIEMLRE---GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
              M       L P+  TL   + A A++ AL  GK  H  +V+     DVFVGN+L+S 
Sbjct: 219 AFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSM 278

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWN---------------------------------- 310
           YAKC  M ++  VF+ + ++++V+WN                                  
Sbjct: 279 YAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITW 338

Query: 311 -AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQ 366
            AVI GYAQ G G EA++ F +M++ G+ PN VTL  LL  C   G +  G   ++Y  +
Sbjct: 339 SAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIK 398

Query: 367 AKLEDPGMLKPEHYAC---MVDLLSRSGRFKEAKEFLYDLPF-DPGIGFWKALLGGCQIH 422
             L      K +       ++D+ ++   ++ A+     +   D  +  W  ++GG   H
Sbjct: 399 NILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQH 458

Query: 423 --SNVELGEFA 431
             +N  L  FA
Sbjct: 459 GEANDALKLFA 469


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/457 (35%), Positives = 256/457 (56%), Gaps = 37/457 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  N VS   +I  +A+     EA+ LF+RM+   +  ++ +  + + +   L  
Sbjct: 218 VFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGC 277

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+ G ++H    ++GL SNV V +A++ +Y K   ++ A+ VF+                
Sbjct: 278 LDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFD---------------- 321

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          E+  R  VSWNAMI G +Q G +E+AV LF  M  E + P+  TL
Sbjct: 322 ---------------ELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTL 366

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I A A+I+     +  H  +++     DV+V  +LI  YAKCG +  + ++F+   E
Sbjct: 367 VSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARE 426

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+++TWNA+I GY  +G G+ A+E FE M+  GI PN  T L +L AC+H GLV++G  Y
Sbjct: 427 RHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREY 486

Query: 364 FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F+  K +   +PGM   EHY  MVDLL R+G+  EA  F+  +P DPG+  + A+LG C+
Sbjct: 487 FTSMKEDYGLEPGM---EHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACK 543

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H NVEL E +A++I  L P++   +V+L+N  + A  W +V+ +R  M++ G+ + PG 
Sbjct: 544 LHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGW 603

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           S I++K+++H F +G  NH    EIY+ L    E+I+
Sbjct: 604 SIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIK 640



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 199/421 (47%), Gaps = 47/421 (11%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPS 117
           +   +VFD +P  + V+   ++  +A+      A+ +  RM      RP   T  SV+P+
Sbjct: 111 ADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPA 170

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                 L   ++ HA+A + GL+  V V +AILD Y K                      
Sbjct: 171 CANARALAACREAHAFAIRSGLEELVNVATAILDAYCK---------------------- 208

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               CG ++  R      +F  MP +N VSWNAMI GY+Q G + EA+ LF  M+ EG+ 
Sbjct: 209 ----CGDIRAARV-----VFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
               ++  A+ A   +  L  G   H   V+     +V V N+LI+ Y+KC  ++ +  V
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA-CNHTGL 356
           FD+L  R  V+WNA+I G AQNG  E+A+  F RM++  ++P+  TL+ ++ A  + +  
Sbjct: 320 FDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDP 379

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           ++  + +    +L     L  + Y    ++D+ ++ GR   A+  L++   +  +  W A
Sbjct: 380 LQARWIHGYSIRLH----LDQDVYVLTALIDMYAKCGRVNIAR-ILFNSARERHVITWNA 434

Query: 415 LLGGCQIH----SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
           ++ G   H    + VEL  F   + + + P + +   +LS A S AG  D        MK
Sbjct: 435 MIHGYGSHGFGKAAVEL--FEEMKSIGIVPNETTFLSVLS-ACSHAGLVDEGREYFTSMK 491

Query: 471 E 471
           E
Sbjct: 492 E 492



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 32/270 (11%)

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           A+  F  M      P   TF S++    A  DL  G+ +HA     G+ S     +A+ +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
           +Y K     +A RVF+                                MP R+ V+WNA+
Sbjct: 103 MYAKCRRPADARRVFD-------------------------------RMPVRDRVAWNAL 131

Query: 212 IGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           + GY++ G    A+ + + M   EG  P+  TL   + A AN  AL   +  HA A++  
Sbjct: 132 VAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSG 191

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            +  V V  +++  Y KCG +  + +VFD +  +N V+WNA+I GYAQNG   EA+  F 
Sbjct: 192 LEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFN 251

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           RM   G+    V++L  L AC   G +++G
Sbjct: 252 RMVEEGVDVTDVSVLAALQACGELGCLDEG 281


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/450 (35%), Positives = 245/450 (54%), Gaps = 34/450 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STAL 121
           ++FDE+P  +VVS   +I  +A+    EEA+  F  M    + P+  T  SV+ + + + 
Sbjct: 215 ELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSG 274

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L LG  + +W    GL SN+ + + ++D+Y+K   +EEA+ +FE   +          
Sbjct: 275 SSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQD---------- 324

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                                +NVVSWN MIGGY+     +EA+ LF  M++  + PN  
Sbjct: 325 ---------------------KNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDV 363

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLVFD 299
           T    + A AN+ AL +GK  HA   K +  +   V +  SLI  YAKCG +  +  +FD
Sbjct: 364 TFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFD 423

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            +  +++ TWNA+I G+A +G  + A+  F RM   G  P+ +T +G+L AC H GL+  
Sbjct: 424 CMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSL 483

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G  YFS    +     K  HY CM+DL  R+G F EA+  + ++   P    W +LLG C
Sbjct: 484 GRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGAC 543

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +IH  +EL E  A+ +  L+PE+ S+YV+LSN  + AG+W++V+ IR  + +  M +VPG
Sbjct: 544 RIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPG 603

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           CS IE+ S VH F+ GD+ H  ++EIY +L
Sbjct: 604 CSSIEVDSVVHEFLVGDKVHPQSNEIYKML 633



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 200/362 (55%), Gaps = 15/362 (4%)

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           A+  +  M+     P+E+TF S+  S T +   + GKQ+HA   K+GL+ N FV +++++
Sbjct: 112 ALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLIN 171

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211
           +Y +   +  A  VF+ +   + VS+T +I G   +   ++A +LF E+P R+VVSWNAM
Sbjct: 172 MYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAM 231

Query: 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI-AALGMGKSFHA-CAVKF 269
           I GY+Q+GR EEA+  F EM R  + PN ST+   + A A   ++L +G    +    + 
Sbjct: 232 ISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRG 291

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
           LG  ++ + N LI  Y KCG +E++  +F+K+ ++N+V+WN +I GY      +EA+  F
Sbjct: 292 LGS-NIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLF 350

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQ--AKLEDPGMLKPEHYACMV 384
            RM  + I PN VT L +L AC + G ++ G   ++Y  +    +++   L    +  ++
Sbjct: 351 RRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVAL----WTSLI 406

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPED 442
           D+ ++ G    AK  ++D      +  W A++ G  +H + +  LG F+        P+D
Sbjct: 407 DMYAKCGDLAVAKR-IFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDD 465

Query: 443 VS 444
           ++
Sbjct: 466 IT 467



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 179/416 (43%), Gaps = 77/416 (18%)

Query: 116 PSSTALED---LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           PS T L +   L   KQ+H+   K GL +  F  S +++                     
Sbjct: 30  PSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEF-------------------- 69

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    C +        AL LF+ + + N V WN MI G S +     A+  ++ M+
Sbjct: 70  ---------CAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMI 120

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G  PN  T P    +   I     GK  HA  +K   + + FV  SLI+ YA+ G + 
Sbjct: 121 SSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELV 180

Query: 293 DSLLVFDK-------------------------------LTERNIVTWNAVICGYAQNGR 321
           ++ LVFDK                               +  R++V+WNA+I GYAQ+GR
Sbjct: 181 NARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGR 240

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA 381
            EEA+ FFE MR   + PN  T+L +L AC  +G   +    + ++ +ED G+       
Sbjct: 241 VEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQ-LGNWVRSWIEDRGLGSNIRLV 299

Query: 382 -CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILA- 437
             ++D+  + G  +EA   L++   D  +  W  ++GG    S  +  LG F  RR++  
Sbjct: 300 NGLIDMYVKCGDLEEASN-LFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLF--RRMMQS 356

Query: 438 -LDPEDVSSYVMLSNALSVA----GKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
            +DP DV+   +L    ++     GKW + + + + MK    T     S I++ +K
Sbjct: 357 NIDPNDVTFLSILPACANLGALDLGKWVH-AYVDKNMKSMKNTVALWTSLIDMYAK 411


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 263/463 (56%), Gaps = 34/463 (7%)

Query: 58  FSSVHQVFDEVPD-LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVI 115
            S  H+VF ++   +NV    T+I  +A+  +   A  L+  M +   + P   T+  +I
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            + T + D+ LG+ +H+   + G  S ++V +++L LY                      
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYAN-------------------- 168

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                 CG         A K+F +MP +++V+WN++I G+++ G+ EEA+ L+ EM  +G
Sbjct: 169 ------CG-----DVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKG 217

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+  T+   + A A I AL +GK  H   +K     ++   N L+  YA+CG +E++ 
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-INGIRPNGVTLLGLLWACNHT 354
            +FD++ ++N V+W ++I G A NG G+EAIE F+ M    G+ P  +T +G+L+AC+H 
Sbjct: 278 TLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 337

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G+V++G+ YF + + E     + EH+ CMVDLL+R+G+ K+A E++  +P  P +  W+ 
Sbjct: 338 GMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRT 397

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG C +H + +L EFA  +IL L+P     YV+LSN  +   +W +V  IR++M   G+
Sbjct: 398 LLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGV 457

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +VPG S +E+ ++VH F+ GD++H  +D IYA L+  T ++R
Sbjct: 458 KKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLR 500


>gi|357514477|ref|XP_003627527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521549|gb|AET02003.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/469 (35%), Positives = 252/469 (53%), Gaps = 46/469 (9%)

Query: 95  LFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYI 154
           L+S+M L    P+++TF  +  + T+L  L+LG+ +H    K G + +VF  +A+LD+Y 
Sbjct: 66  LYSQMYLHGHSPNQYTFNFLFTTCTSLSSLSLGQMIHTQFMKSGFKHDVFASTALLDMYA 125

Query: 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
           KL  ++ A  VF++     + ++  M+ G  +    E AL+LF  MP RNVVSW  M+ G
Sbjct: 126 KLGCLKFARNVFDEMSVKELATWNAMMAGCTRFGDMERALELFWLMPSRNVVSWTTMVSG 185

Query: 215 YSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           Y Q  + E+A+ LF+ M RE  V PN  TL   + A AN+ AL +G+     A K     
Sbjct: 186 YLQNKQYEKALGLFMRMEREKDVSPNEVTLASVLPACANLGALEIGQRVEVYARKNGFFK 245

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           ++FV N+++  YAKCG ++ +  VFD++   RN+ +WN++I G A +G+  +AI+ +++M
Sbjct: 246 NLFVCNAVLEMYAKCGKIDVAWKVFDEIGRFRNLCSWNSMIMGLAVHGQCHKAIQLYDQM 305

Query: 333 RIN--------------------------------------------GIRPNGVTLLGLL 348
            ++                                            G  P+ VT +GLL
Sbjct: 306 LVSYSLYLLFISFAFIMIRGGHGLVNHINRTEPNLSVEMVRNNRTREGTLPDDVTFVGLL 365

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC H G+VEKG   F     +   + K EHY CMVDLL R+GR  EA E +  +P  P 
Sbjct: 366 LACTHGGMVEKGKHVFQSMTRDFNIIPKLEHYGCMVDLLGRAGRLTEAYEVIKRMPMKPD 425

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W  LLG C  H NVEL E AA  +  L+P +  +YV+LSN  + AGKWD V+ +R+ 
Sbjct: 426 SVIWGTLLGACSFHGNVELAEVAAESLFVLEPWNPGNYVILSNIYASAGKWDGVAKLRKV 485

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           MK   +T+  G S+IE   ++H F+  DR+H  + EI+A+L    E I+
Sbjct: 486 MKGSKITKTAGQSFIEEGGQLHKFIVEDRSHSESSEIFALLNGVYEMIK 534



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 60/351 (17%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-LLLNIRPSEFTFGSVIPSSTAL 121
           ++F  +P  NVVS TT++  + +   YE+A+ LF RM    ++ P+E T  SV+P+   L
Sbjct: 166 ELFWLMPSRNVVSWTTMVSGYLQNKQYEKALGLFMRMEREKDVSPNEVTLASVLPACANL 225

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNVVSYTTM 180
             L +G+++  +A K G   N+FV +A+L++Y K   I+ A +VF++     N+ S+ +M
Sbjct: 226 GALEIGQRVEVYARKNGFFKNLFVCNAVLEMYAKCGKIDVAWKVFDEIGRFRNLCSWNSM 285

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMI-----------GGYSQTGR-NEEAVNLF 228
           I GL    +   A++L+ +M    +VS++  +           GG+      N    NL 
Sbjct: 286 IMGLAVHGQCHKAIQLYDQM----LVSYSLYLLFISFAFIMIRGGHGLVNHINRTEPNLS 341

Query: 229 IEML-----REGLVPNHSTLPCAIIAAANIAALGMGKS-FHACAVKFLGKLDVFVGNSLI 282
           +EM+     REG +P+  T    ++A  +   +  GK  F +    F          ++I
Sbjct: 342 VEMVRNNRTREGTLPDDVTFVGLLLACTHGGMVEKGKHVFQSMTRDF----------NII 391

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
                 G M D L                      + GR  EA E  +RM    ++P+ V
Sbjct: 392 PKLEHYGCMVDLL---------------------GRAGRLTEAYEVIKRMP---MKPDSV 427

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
               LL AC+  G VE          + +P    P +Y  + ++ + +G++
Sbjct: 428 IWGTLLGACSFHGNVELAEVAAESLFVLEP--WNPGNYVILSNIYASAGKW 476



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 37/234 (15%)

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +   L+ +M   G  PN  T         ++++L +G+  H   +K   K DVF   +L+
Sbjct: 62  QCFTLYSQMYLHGHSPNQYTFNFLFTTCTSLSSLSLGQMIHTQFMKSGFKHDVFASTALL 121

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNA------------------------------- 311
             YAK G ++ +  VFD+++ + + TWNA                               
Sbjct: 122 DMYAKLGCLKFARNVFDEMSVKELATWNAMMAGCTRFGDMERALELFWLMPSRNVVSWTT 181

Query: 312 VICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++ GY QN + E+A+  F RM R   + PN VTL  +L AC + G +E G      A+  
Sbjct: 182 MVSGYLQNKQYEKALGLFMRMEREKDVSPNEVTLASVLPACANLGALEIGQRVEVYAR-- 239

Query: 371 DPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
             G  K   + C  ++++ ++ G+   A +   ++     +  W +++ G  +H
Sbjct: 240 KNGFFK-NLFVCNAVLEMYAKCGKIDVAWKVFDEIGRFRNLCSWNSMIMGLAVH 292


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 256/456 (56%), Gaps = 31/456 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           +++  V+  S+S +   +  VF E+   N+VS T +I  + +  +++E + +F  M+   
Sbjct: 165 VQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSG 224

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            +P+  T  SV+P+   LE LNLGK +H +  K+G+  +V + +A++ LY K  ++E A 
Sbjct: 225 TQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETAR 284

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                                           LF  M  +N+VSWNAMI  Y Q      
Sbjct: 285 -------------------------------SLFDGMVVQNLVSWNAMIAAYEQNNAGAN 313

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           AV LF  M  E +  ++ T+   I A A++ AL  G+  H    +   +++V + N+LI 
Sbjct: 314 AVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALID 373

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCG+++ +  VF++L  R++V+W ++I   A +G GE+A++ F RM+  G++PN  T
Sbjct: 374 MYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFT 433

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
              +  AC H+GLVE+G  +F     +   M   EH ACMVDLL R+G   EA EF+  +
Sbjct: 434 FAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKM 493

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P +P +  W ALLG C+IHSN+EL E  A ++  LDP+ V+ YV++SN  + AG+W++ +
Sbjct: 494 PVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAA 553

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
            +R+ M+E+ + ++PG S +E+  + H F++G R+ 
Sbjct: 554 RLRKLMEERELKKIPGHSLVEVNRRFHTFLSGSRSQ 589



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 93/159 (58%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A K+F +MP R+V  WN +I GY+  G  EEA+ L+  M   GL P++ T P  + + A 
Sbjct: 81  ARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAV 140

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           ++AL  GK  H   VK     DVFV +SL++ Y++ G      LVF ++  RNIV+W AV
Sbjct: 141 LSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAV 200

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           I GY QN   +E +  F  M  +G +PN VTL+ +L AC
Sbjct: 201 IAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPAC 239



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           +M+ +  +FD++ +R++  WN +I GYA  G  EEA+  +  M   G+ P+  T   ++ 
Sbjct: 77  TMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVR 136

Query: 350 AC 351
           +C
Sbjct: 137 SC 138


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 263/448 (58%), Gaps = 36/448 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVV+ T +IG F + ++ ++A+ LF +M    +RP+ FT+ +V+    +    +L  QLH
Sbjct: 372 NVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPS----SLLSQLH 427

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   +    V +A+LD Y+K  ++ E+ RVF                         
Sbjct: 428 AQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF------------------------- 462

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
                   +P +++V+W+AM+ G +QT  +E+A+ +FI++++EG+ PN  T    I A +
Sbjct: 463 ------YSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACS 516

Query: 252 NIAA-LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           + AA +  GK  HA AVK      + V ++L++ Y+K G++E +  VF +  ER+IV+WN
Sbjct: 517 SSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWN 576

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I GY Q+G  ++A+E F+ M+  G+  + VT +G+L AC H GLVE+G  YF+    +
Sbjct: 577 SMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKD 636

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
                K EHY+CMVDL SR+G F +A + +  +PF      W+ LL  C++H N+ELG+ 
Sbjct: 637 YHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKL 696

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
           AA ++++L P D   YV+LSN  +VAG W+  +++R+ M E+ + +  GCSWIEIK+++ 
Sbjct: 697 AAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIF 756

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            F+ GD +H  +D +YA L   + ++++
Sbjct: 757 SFLAGDVSHPFSDLVYAKLEELSIKLKD 784



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 147/313 (46%), Gaps = 42/313 (13%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           HQ+FDE P  ++     ++  F++ +H  EA++LF  +    +     T    +     L
Sbjct: 58  HQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVL 117

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D  +G+Q+H  + K G   +V VG++++D+Y                            
Sbjct: 118 FDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMY---------------------------- 149

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
              +K E FED   +F EM  +NVVSW +++ GY++ G N+E ++L  +M  EG+ PN  
Sbjct: 150 ---MKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGF 206

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A A+ + +  G   HA  VK   +   FV N+LI  Y K   + D+  VFD +
Sbjct: 207 TFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSM 266

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN--------- 352
             R+ VTWN +I GYA  G   E  + F RMR+ G++ +       L  C+         
Sbjct: 267 VVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTK 326

Query: 353 --HTGLVEKGYSY 363
             H G+V+ GY +
Sbjct: 327 QLHCGVVKNGYEF 339



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 171/381 (44%), Gaps = 38/381 (9%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           LE  ++ T  V    +++ F     +FDE+   NVVS T+++  +A+    +E I+L ++
Sbjct: 136 LEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQ 195

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M +  + P+ FTF +V+ +      +  G Q+HA   K G +   FV +A++ +Y+K   
Sbjct: 196 MQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLK--- 252

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
                                        E   DA  +F  M  R+ V+WN MIGGY+  
Sbjct: 253 ----------------------------SEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAI 284

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G   E   +F  M   G+  + +    A+   +    L   K  H   VK   +    + 
Sbjct: 285 GFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR 344

Query: 279 NSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            +L+  Y+KC S++++  +F       N+VTW A+I G+ QN   ++A++ F +M   G+
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGV 404

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           RPN  T   +L A   + L+ + ++   +A  E      P     ++D   ++G   E+ 
Sbjct: 405 RPNHFTYSTVL-AGKPSSLLSQLHAQIIKAYYEKV----PSVATALLDAYVKTGNVVESA 459

Query: 398 EFLYDLPFDPGIGFWKALLGG 418
              Y +P    +  W A+L G
Sbjct: 460 RVFYSIPAKDIVA-WSAMLTG 479



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 2/177 (1%)

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           L  R R+  A +LF E P +++  +N ++  +S+   + EA++LF ++   GL  +  TL
Sbjct: 50  LPSRPRY--AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTL 107

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
            CA+     +    +G+  H  ++K     DV VG SL+  Y K    ED   +FD++  
Sbjct: 108 SCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGI 167

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +N+V+W +++ GYA+NG  +E I    +M++ G+ PNG T   +L A     ++E G
Sbjct: 168 KNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 125/244 (51%), Gaps = 11/244 (4%)

Query: 2   IQLLC-ICRSSLSLNKLSKLHSLA--PNYLIETQKASVQKL---ETPAIRTDSVSCGSES 55
           + L C + R  +  N  +    LA  P+ L+    A + K    + P++ T  +    ++
Sbjct: 393 VDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKT 452

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
                  +VF  +P  ++V+ + ++   A+    E+A+ +F +++   ++P+E+TF SVI
Sbjct: 453 GNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVI 512

Query: 116 PS-STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
            + S++   +  GKQ+HA A K G  + + V SA+L +Y K  +IE A +VF      ++
Sbjct: 513 NACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDI 572

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIE 230
           VS+ +MI G  +    + AL++FQ M ++ +    V++  ++   +  G  EE    F  
Sbjct: 573 VSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNI 632

Query: 231 MLRE 234
           M+++
Sbjct: 633 MIKD 636


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/476 (35%), Positives = 256/476 (53%), Gaps = 37/476 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           ++C S     S   +VF E+ +    + VS   +I    +     EA+ LF  M+   ++
Sbjct: 181 LACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLK 240

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS-SIEEATR 164
              FT  SV+ + T ++DL  G+Q H    K G   N  VGS ++DLY K + S+ E  +
Sbjct: 241 VDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRK 300

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS-QTGRNEE 223
           VFE+   P++V                                WN MI G+S     +E+
Sbjct: 301 VFEEITAPDLVL-------------------------------WNTMISGFSLYEDLSED 329

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLI 282
            +  F EM R G  P+  +  C   A +N+++  +GK  HA A+K     + V V N+L+
Sbjct: 330 GLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALV 389

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + Y+KCG++ D+  VFD + E N V+ N++I GYAQ+G   E++  FE M    I PN +
Sbjct: 390 AMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSI 449

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T + +L AC HTG VE+G  YF+  K       + EHY+CM+DLL R+G+ KEA+  +  
Sbjct: 450 TFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIET 509

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +PF+PG   W  LLG C+ H NVEL   AA   L L+P + + YVMLSN  + A +W+  
Sbjct: 510 MPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEA 569

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + ++R M+E+G+ + PGCSWIEI  KVHVFV  D +H M  EI+  +    +++++
Sbjct: 570 ATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQ 625



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 155/353 (43%), Gaps = 35/353 (9%)

Query: 57  KFSSVH---QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           K S +H   +VFDE+P  ++VS  T+I  +A +      + LF  +  L +    FT   
Sbjct: 87  KHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSG 146

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VI +    +D+ L +QLH +    G      V +A+L  Y +   + EA RVF +     
Sbjct: 147 VITACG--DDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFRE----- 199

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                                    E   R+ VSWNAMI    Q     EAV LF EM+R
Sbjct: 200 -----------------------MGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVR 236

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC-GSME 292
            GL  +  T+   + A   +  L  G+ FH   +K     +  VG+ LI  Y+KC GSM 
Sbjct: 237 RGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMV 296

Query: 293 DSLLVFDKLTERNIVTWNAVICGYA-QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +   VF+++T  ++V WN +I G++      E+ +  F  M+ NG RP+  + + +  AC
Sbjct: 297 ECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSAC 356

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           ++      G    + A   D    +      +V + S+ G   +A+     +P
Sbjct: 357 SNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP 409



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 169/357 (47%), Gaps = 22/357 (6%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF +++ +  A  DL  GK LHA   K  +  + ++ +    LY K  S+  A   F  T
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
             PNV SY T+I    K      A ++F E+P  ++VS+N +I  Y+  G     + LF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 230 EM--LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF--VGNSLISFY 285
           E+  LR GL  +  TL   I A  +   +G+ +  H C V   G  D +  V N++++ Y
Sbjct: 131 EVRELRLGL--DGFTLSGVITACGD--DVGLVRQLH-CFVVVCGH-DCYASVNNAVLACY 184

Query: 286 AKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           ++ G + ++  VF ++ E   R+ V+WNA+I    Q+  G EA+  F  M   G++ +  
Sbjct: 185 SRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMF 244

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSR-SGRFKEAKEFL 400
           T+  +L A      +  G  +     +   G     H    ++DL S+ +G   E ++  
Sbjct: 245 TMASVLTAFTCVKDLVGGRQF--HGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVF 302

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNV-ELGEFAARRIL--ALDPEDVSSYVMLSNALS 454
            ++   P +  W  ++ G  ++ ++ E G +  R +      P+D  S+V +++A S
Sbjct: 303 EEIT-APDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDC-SFVCVTSACS 357


>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/434 (36%), Positives = 252/434 (58%), Gaps = 12/434 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FDE+P   + +   +IG + K    ++++ L  R++L   RP  FT+  ++ +ST+ +
Sbjct: 98  QMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGD 157

Query: 123 DL----NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           ++    NLG  +H    K  ++ +  + +A++D Y+K   +  A +VF+     NV+  T
Sbjct: 158 NVTLSCNLGSVVHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMMEKNVICST 217

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN-EEAVNLFIEMLREGLV 237
           +MI G + R   EDA ++F+    ++VV +NAMI GYS++ +  E+A+ +++EM R G  
Sbjct: 218 SMISGYMNRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFR 277

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN ST    I A + +A   +G+      +K     +V  G++LI  Y+KCG +ED+   
Sbjct: 278 PNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRA 337

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++ E+N+ +W+++I GY +NGR +EA++ F +M+   I PN VT LG L AC H GLV
Sbjct: 338 FEQMPEKNVFSWSSMIDGYGKNGRPDEALQLFHKMQDCCIEPNYVTFLGALSACGHAGLV 397

Query: 358 EKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            KG   F   + E    PGM   EHYACMVDLL R+G    A EF+  +P  P    W A
Sbjct: 398 SKGREIFESMEREYSLKPGM---EHYACMVDLLGRAGSLNLAWEFVMGMPEKPSSDVWAA 454

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVS-SYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           LL  C +H NVE+   AA  +  L+ E  S +YV LSN L+ AGKWD V+ +R  MK +G
Sbjct: 455 LLSACNLHGNVEMASVAANELFKLNAEGRSGAYVALSNTLAAAGKWDGVTEVREIMKSRG 514

Query: 474 MTRVPGCSWIEIKS 487
           + +  G SW+  +S
Sbjct: 515 ILKDTGSSWVGTES 528



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 184/425 (43%), Gaps = 96/425 (22%)

Query: 108 EFTFGSVIPS-STALED-LNL-----GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
           E+ F S   + S+AL+D +N      G+++HA   K G   N  V   +L LY+K     
Sbjct: 35  EYLFRSTAAALSSALQDHINSNTPFHGQKIHAHIVKTGFIPNTNVSIKLLILYLK----- 89

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                CG LK  R     ++F E+P R + ++N +IGGY + G 
Sbjct: 90  ---------------------CGCLKYAR-----QMFDELPQRTLSAYNYLIGGYLKLGL 123

Query: 221 NEEAVNLFIEMLREGLVPN---HSTLPCAIIAAANIA-ALGMGKSFHACAVK-------- 268
            ++++NL   ++ EG  P+   +S +  A  +  N+  +  +G   H   +K        
Sbjct: 124 VQDSMNLVRRLVLEGQRPDGFTYSMILKASTSGDNVTLSCNLGSVVHGQILKSEVEPDDV 183

Query: 269 -----------------------FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
                                   + + +V    S+IS Y   GS+ED+  +F++  E++
Sbjct: 184 LYTALVDSYVKSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKD 243

Query: 306 IVTWNAVICGYAQNGR-GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           +V +NA+I GY+++ +  E+A+E +  M+  G RPN  T   ++ AC+     E G    
Sbjct: 244 VVVFNAMIEGYSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQ 303

Query: 365 SQAKLEDPGMLKPEHY------ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            Q       +LK E +      + ++D+ S+ GR ++A+     +P +  +  W +++ G
Sbjct: 304 GQ-------LLKREFFTNVKTGSALIDMYSKCGRIEDARRAFEQMP-EKNVFSWSSMIDG 355

Query: 419 CQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR--EMKEKGM 474
              +   +  L  F   +   ++P    +YV    ALS  G    VS  R   E  E+  
Sbjct: 356 YGKNGRPDEALQLFHKMQDCCIEP----NYVTFLGALSACGHAGLVSKGREIFESMEREY 411

Query: 475 TRVPG 479
           +  PG
Sbjct: 412 SLKPG 416



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 37/246 (15%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR--------------- 98
           +S +     +VFD + + NV+ +T++I  +  +   E+A  +F R               
Sbjct: 194 KSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFNAMIEG 253

Query: 99  -----------------MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS 141
                            M     RP+  TF SVI + + L    +G+Q+     K    +
Sbjct: 254 YSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFT 313

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           NV  GSA++D+Y K   IE+A R FE     NV S+++MI G  K  R ++AL+LF +M 
Sbjct: 314 NVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNGRPDEALQLFHKMQ 373

Query: 202 ----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIAAANIAAL 256
                 N V++   +      G   +   +F  M RE  L P      C +       +L
Sbjct: 374 DCCIEPNYVTFLGALSACGHAGLVSKGREIFESMEREYSLKPGMEHYACMVDLLGRAGSL 433

Query: 257 GMGKSF 262
            +   F
Sbjct: 434 NLAWEF 439


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 170/457 (37%), Positives = 250/457 (54%), Gaps = 39/457 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFDE+P  N+VS  ++I  F K   Y  AI +F  +L L   P + +  SV+ +   L +
Sbjct: 257 VFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVE 314

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+ GKQ+H    K GL   V+V ++++D+Y K                          CG
Sbjct: 315 LDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCK--------------------------CG 348

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           L     FEDA KLF     R+VV+WN MI G  +    E+A   F  M+REG+ P+ ++ 
Sbjct: 349 L-----FEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASY 403

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                A+A+IAAL  G   H+  +K     +  + +SL++ Y KCGSM D+  VF +  E
Sbjct: 404 SSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKE 463

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            N+V W A+I  + Q+G   EAI+ FE M   G+ P  +T + +L AC+HTG ++ G+ Y
Sbjct: 464 HNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKY 523

Query: 364 F-SQAKLED--PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F S A + +  PG+   EHYACMVDLL R GR +EA  F+  +PF+P    W ALLG C 
Sbjct: 524 FNSMANVHNIKPGL---EHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACG 580

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            H+NVE+G   A R+  L+P++  +Y++LSN     G  +    +RR M   G+ +  GC
Sbjct: 581 KHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGC 640

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           SWI++K++  VF   DR+H    EIY +L+   E I+
Sbjct: 641 SWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIK 677



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 14/318 (4%)

Query: 149 ILDLYIKLSSIEEATRVFED----THNPNVVSYTTMICGLLKRERFEDALKLFQEMPH-- 202
           +L+   KL S++ AT++        ++ ++ +  T++    K       L LF   PH  
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
            NVV+W  +I   S++ +  +A+  F  M   G+ PNH T    + A A+ A L  G+  
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           HA   K     D FV  +L+  YAKCGSM  +  VFD++  RN+V+WN++I G+ +N   
Sbjct: 223 HALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLY 282

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA- 381
             AI  F    +  + P+ V++  +L AC   GLVE  +       +   G++   +   
Sbjct: 283 GRAIGVFR--EVLSLGPDQVSISSVLSAC--AGLVELDFGKQVHGSIVKRGLVGLVYVKN 338

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG--EFAARRILALD 439
            +VD+  + G F++A + L+    D  +  W  ++ GC    N E     F A     ++
Sbjct: 339 SLVDMYCKCGLFEDATK-LFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVE 397

Query: 440 PEDVSSYVMLSNALSVAG 457
           P++ S   +   + S+A 
Sbjct: 398 PDEASYSSLFHASASIAA 415


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 264/463 (57%), Gaps = 34/463 (7%)

Query: 58  FSSVHQVFDEVPD-LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVI 115
            S  H+VF ++   +NV    T+I  +A+  +   A  L+  M +   + P   T+  +I
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            + T + D+ LG+ +H+   + G  S ++V +++L LY                      
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYAN-------------------- 168

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                 CG +       A K+F +MP +++V+WN++I G+++ G+ EEA+ L+ EM  +G
Sbjct: 169 ------CGDV-----ASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKG 217

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+  T+   + A A I AL +GK  H   +K     ++   N L+  YA+CG +E++ 
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-INGIRPNGVTLLGLLWACNHT 354
            +FD++ ++N V+W ++I G A NG G+EAIE F+ M    G+ P  +T +G+L+AC+H 
Sbjct: 278 TLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 337

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G+V++G+ YF + + E     + EH+ CMVDLL+R+G+ K+A E++  +P  P +  W+ 
Sbjct: 338 GMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRT 397

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG C +H + +L EFA  +IL L+P     YV+LSN  +   +W +V  IR++M   G+
Sbjct: 398 LLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGV 457

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +VPG S +E+ ++VH F+ GD++H  +D IYA L+  T ++R
Sbjct: 458 KKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLR 500


>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 262/470 (55%), Gaps = 18/470 (3%)

Query: 63  QVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGSVI 115
            + D +P    NVVS  TII   A+     EA+ +F+R+     L   +    F   SV 
Sbjct: 120 HLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFARLARDRCLGPEVALDRFAVVSVA 179

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            +   +  L   +++H      G++  V + +A++D Y K   +E+A  +F      + V
Sbjct: 180 SACAGMGALRPLREMHGAVVVSGVEVTVIMANAMVDAYSKAGRMEDARTLFNQMSIQDTV 239

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+T+MI G  + +R ++A+++F  MP ++ ++W A+I G+ Q G  + A++LF +ML EG
Sbjct: 240 SWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTALISGHEQNGEEDAALDLFQQMLVEG 299

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF---LGKLDVFVGNSLISFYAKCGSME 292
           + P    L  ++ A A +  +  G+  H   ++    L   ++F+ N+LI  Y+KCG M 
Sbjct: 300 MAPTPFALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDMYSKCGDMA 359

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            ++LVF +++ER+ ++WN+++ G++ NG+G++++  F+RM    ++P  VT L +L AC+
Sbjct: 360 TAMLVFARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPTYVTFLAVLTACS 419

Query: 353 HTGLVEKGYSYFSQAKLE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPG 408
           H GLV  G       +    +P   + EHYA  +D L R+ + +EA EF+  L     PG
Sbjct: 420 HAGLVTDGRRILESMQYHGVEP---RAEHYASFIDALGRNHQLEEASEFIKGLSSRIGPG 476

Query: 409 I-GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
             G W ALLG C++H N E+ E  A  +  L+P +   YVMLSN  + AG+WD+   IR 
Sbjct: 477 TTGSWGALLGACRVHGNTEIAEKVAESLFQLEPGNSGRYVMLSNIYAAAGQWDDARRIRA 536

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            MKEKG+ +   CSWIE++S  H+FV  D +H   +EIY +L    + +R
Sbjct: 537 IMKEKGLRKDQACSWIEVRSAKHMFVADDTSHCEANEIYGMLDRLFDYMR 586



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 42/288 (14%)

Query: 114 VIPSSTALEDLN-LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +I  + +L D+  LG+  HA   K  L  +  + + +++LY  L+S   +   FED    
Sbjct: 37  LIERAISLGDVRYLGRAAHALLLKTALNHHTLLSNRLIELYAMLNSPAASRTAFEDLPYR 96

Query: 173 NVVSYTTMICGLLK-RERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           N  SY  ++  L +      DAL L   MP   RNVVS+N +I   ++ GR  EA+ +F 
Sbjct: 97  NAHSYNNLLAALSRGSATLPDALHLLDAMPASSRNVVSYNTIISALARNGRQGEALRVFA 156

Query: 230 EMLREG-LVPNHSTLPCAIIAAANIAALGMG-----KSFHACAVKFLGKLDVFVGNSLIS 283
            + R+  L P  +    A+++ A+  A GMG     +  H   V    ++ V + N+++ 
Sbjct: 157 RLARDRCLGPEVALDRFAVVSVASACA-GMGALRPLREMHGAVVVSGVEVTVIMANAMVD 215

Query: 284 FYAKCGSMEDSLLVFDKLT-------------------------------ERNIVTWNAV 312
            Y+K G MED+  +F++++                               E++ + W A+
Sbjct: 216 AYSKAGRMEDARTLFNQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDTIAWTAL 275

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           I G+ QNG  + A++ F++M + G+ P    L+  L AC   GLV +G
Sbjct: 276 ISGHEQNGEEDAALDLFQQMLVEGMAPTPFALVSSLGACAKLGLVTRG 323


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/457 (34%), Positives = 252/457 (55%), Gaps = 31/457 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD + + ++VS  T+IG + +     EA+ +F  M     + SEFT  SV+ +     
Sbjct: 117 QVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNC 176

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D    K+LH  + K  +  N++VG+A+LDLY K                          C
Sbjct: 177 DALECKKLHCLSVKTCIDLNLYVGTALLDLYAK--------------------------C 210

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G++K     DA+++F+ M  ++ V+W++M+ GY Q    EEA+ L+    R  L  N  T
Sbjct: 211 GMIK-----DAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFT 265

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I A +N+AAL  GK  HA   K     +VFV +S +  YAKCGS+ +S ++F ++ 
Sbjct: 266 LSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ 325

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+N+  WN +I G+A++ R +E +  FE+M+ +G+ PN VT   LL  C HTGLVE+G  
Sbjct: 326 EKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRR 385

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F   +          HY+CMVD+L R+G   EA E +  +PFDP    W +LL  C+++
Sbjct: 386 FFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVY 445

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+EL E AA ++  L+PE+  ++V+LSN  +   +W+ ++  R+ +++  + +V G SW
Sbjct: 446 KNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSW 505

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           I+IK KVH F  G+  H    EI + L +   + R+F
Sbjct: 506 IDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKF 542



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 145/293 (49%), Gaps = 17/293 (5%)

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG +     E A ++F  M  R++VSWN MIG Y++     EA+++F+EM  EG   +  
Sbjct: 109 CGFV-----ELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEF 163

Query: 242 TLPCAIIAAA-NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           T+   + A   N  AL   K  H  +VK    L+++VG +L+  YAKCG ++D++ VF+ 
Sbjct: 164 TISSVLSACGVNCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFES 222

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + +++ VTW++++ GY QN   EEA+  + R +   +  N  TL  ++ AC++   + +G
Sbjct: 223 MQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 282

Query: 361 YSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
                 A +   G       A   VD+ ++ G  +E+     ++  +  +  W  ++ G 
Sbjct: 283 KQM--HAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNLELWNTIISGF 339

Query: 420 QIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
             H+  +  +  F   +   + P +V+     S+ LSV G    V   RR  K
Sbjct: 340 AKHARPKEVMILFEKMQQDGMHPNEVT----FSSLLSVCGHTGLVEEGRRFFK 388



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 6/186 (3%)

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A   A+   K+ H   ++   + DV + N LI+ Y+KCG +E +  VFD + ER++V+WN
Sbjct: 72  ARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWN 131

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC--NHTGLVEKGYSYFSQAK 368
            +I  Y +N    EA++ F  MR  G + +  T+  +L AC  N   L  K     S   
Sbjct: 132 TMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT 191

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
             D  +        ++DL ++ G  K+A +    +  D     W +++ G   + N E  
Sbjct: 192 CIDLNLYVG---TALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAGYVQNKNYEEA 247

Query: 429 EFAARR 434
               RR
Sbjct: 248 LLLYRR 253


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 167/482 (34%), Positives = 260/482 (53%), Gaps = 43/482 (8%)

Query: 46  TDSVSCG------SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99
           TD+V+C       ++  +     +VFD +   +++S  T+I  +       EA+ LFSRM
Sbjct: 89  TDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRM 148

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
                + +EFT  S + +  A   +   KQLH  A K+ L S+ FVG+A LD+Y K + I
Sbjct: 149 HREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMI 208

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
           ++A  VFE+                               MP +  V+W+++  G+ Q G
Sbjct: 209 KDACWVFEN-------------------------------MPEKTSVTWSSLFAGFVQNG 237

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
            +EE + LF    REG+     T+   +   A++A +  G   HA  VK     ++FV  
Sbjct: 238 LHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVAT 297

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           SL+  YAKCG +E S  VF  + E+N+V WNA+I  ++++    EA+  FE+M+  GI P
Sbjct: 298 SLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFP 357

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           N VT L +L AC+HTGLVE+G  YF+     +  +P +L   HY+CMVD+L RSG+  EA
Sbjct: 358 NEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVL---HYSCMVDVLGRSGKTDEA 414

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
            + L  +PF+P    W +LLG  +IH N+ L   AA ++  L+PE+  ++V+LSN  + +
Sbjct: 415 WKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAAS 474

Query: 457 GKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           G W+NV   R+ +++ G  +  G SWIE K K+HVFV G+R H    ++Y  L     ++
Sbjct: 475 GNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEM 534

Query: 517 RE 518
           R+
Sbjct: 535 RK 536



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 147/345 (42%), Gaps = 37/345 (10%)

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT   ++        L +GK  H  A   GL ++    + +++LY K    + A RVF+ 
Sbjct: 57  FTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDA 116

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               +++S+ TMI G                               Y+    + EA+ LF
Sbjct: 117 MSVRSIISWNTMIAG-------------------------------YTHNREDVEALKLF 145

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
             M REG      TL   + A A   A+   K  H  A+K       FVG + +  YAKC
Sbjct: 146 SRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKC 205

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             ++D+  VF+ + E+  VTW+++  G+ QNG  EE +  F+  +  G++    T+  +L
Sbjct: 206 NMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSIL 265

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDP 407
             C    L+ +G      A +   G  +    A  +VD+ ++ G+ +++ E   D+  + 
Sbjct: 266 STCASLALIIEGTQV--HAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADME-EK 322

Query: 408 GIGFWKALLGGC--QIHSNVELGEFAARRILALDPEDVSSYVMLS 450
            +  W A++       HS   +  F   + + + P +V+   +LS
Sbjct: 323 NVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILS 367


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 174/513 (33%), Positives = 272/513 (53%), Gaps = 47/513 (9%)

Query: 20  LHSL----APNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH------QVFDEVP 69
           LHSL    A N    T KA   ++    + TD+++     + +S         +VFDE+P
Sbjct: 1   LHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIP 60

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           + ++VS   +IG   +    E+AI +F  M       SEFT  SV+ +  A  D+   +Q
Sbjct: 61  ERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQ 120

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           LHA+A K  + ++VFVG+A++D+Y K  SIE+A+ VFE                      
Sbjct: 121 LHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEG--------------------- 159

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
                     MP RN V+W++++ G+ Q    EE + LF      GL  N   +   I A
Sbjct: 160 ----------MPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRA 209

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A +AAL  G+  HA   +     + FV ++L+  YAKCGS+E++ ++F  + ++N+V W
Sbjct: 210 CAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLW 269

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           NA+I G+A++    E +  FE M+  G++P+ VT + +L AC H GLV+KG SYF     
Sbjct: 270 NAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTR 329

Query: 370 E---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           E    P +L   HY+CMVD+L R G   EA E +  +PF      W +LL  C+IH N+E
Sbjct: 330 EHNVSPNVL---HYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLE 386

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           L E AA+ +  ++P+   +YV+L+N  + + KW+  +  R+ +K   + +  G SWIEIK
Sbjct: 387 LAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEAAKARKSLKGSEILKERGKSWIEIK 446

Query: 487 SKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            KVH F+ G+R H    +IY  L +  E++ + 
Sbjct: 447 DKVHTFMAGERTHPRITDIYLELNNLLEEMTKL 479


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 264/465 (56%), Gaps = 9/465 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ++D      +     P+ N  S   II   A+    ++A  LF  M      P+  ++ +
Sbjct: 103 QNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMPC----PNVVSYTA 158

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++     +E   +G+    +       S  +V   +++  ++    EEA  VF      N
Sbjct: 159 MVDGYARVEG-GIGRARALFEAMPRRNSVSWV--VMINGLVENGLCEEAWEVFVRMPQKN 215

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
            V+ T MI G  K  R EDA  LFQE+  R++VSWN ++ GY+Q GR EEA+NLF +M+R
Sbjct: 216 DVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIR 275

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+ P+  T     IA A++A+L  G   HA  +K     D+ V N+LI+ ++KCG + D
Sbjct: 276 TGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVD 335

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           S LVF +++  ++V+WN +I  +AQ+G  ++A  +F++M    ++P+G+T L LL AC  
Sbjct: 336 SELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCR 395

Query: 354 TGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            G V +  + FS   +++ G+  + EHYAC+VD++SR+G+ + A + + ++PF      W
Sbjct: 396 AGKVNESMNLFS-LMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIW 454

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            A+L  C +H NVELGE AARRIL LDP +  +YVMLSN  + AGKW +V  IR  MKE+
Sbjct: 455 GAVLAACSVHLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVLMKEQ 514

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           G+ +    SW++I +K H FV GD +H   ++I+  LR  T  ++
Sbjct: 515 GVKKQTAYSWLQIGNKTHYFVGGDPSHPNINDIHVALRRITLHMK 559



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 9/220 (4%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           NV   ++I+   ++  ++++A R        N  SY  +I GL +  R +DA +LF+ MP
Sbjct: 90  NVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAMP 149

Query: 202 HRNVVSWNAMIGGYSQT-GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
             NVVS+ AM+ GY++  G    A  LF  M R   V         ++    +   G+ +
Sbjct: 150 CPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVS-------WVVMINGLVENGLCE 202

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
                 V+   K DV    ++I+ + K G MED+  +F ++  R++V+WN ++ GYAQNG
Sbjct: 203 EAWEVFVRMPQKNDV-ARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNG 261

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           RGEEA+  F +M   G++P+ +T + +  AC     +E+G
Sbjct: 262 RGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEG 301



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 104/208 (50%), Gaps = 5/208 (2%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104
           RT  ++   +  +      +F E+   ++VS   I+  +A+    EEA+ LFS+M+   +
Sbjct: 219 RTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGM 278

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           +P + TF SV  +  +L  L  G + HA   K G  S++ V +A++ ++ K   I ++  
Sbjct: 279 QPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSEL 338

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGR 220
           VF    +P++VS+ T+I    +   ++ A   F +M   +V    +++ +++    + G+
Sbjct: 339 VFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGK 398

Query: 221 NEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
             E++NLF  M+   G+ P      C +
Sbjct: 399 VNESMNLFSLMVDNYGIPPRSEHYACLV 426



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 18/224 (8%)

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I  L +  + + A KLF EM  ++VV+WN+M+  Y Q G  + +  LF  M    +V  +
Sbjct: 36  IVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPLRNVVSWN 95

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           S      I AA +    +  +F   A     + +    N++IS  A+CG M+D+  +F+ 
Sbjct: 96  S------IIAACVQNDNLQDAFRYLAAA--PEKNAASYNAIISGLARCGRMKDAQRLFEA 147

Query: 301 LTERNIVTWNAVICGYAQ-NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           +   N+V++ A++ GYA+  G    A   FE M     R N V+ + ++      GL E+
Sbjct: 148 MPCPNVVSYTAMVDGYARVEGGIGRARALFEAMP----RRNSVSWVVMINGLVENGLCEE 203

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            +  F +   ++           M+    + GR ++A++   ++
Sbjct: 204 AWEVFVRMPQKN-----DVARTAMITGFCKEGRMEDARDLFQEI 242



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 14/213 (6%)

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
           SF   A  F    DV+  N  I   ++ G ++ +  +FD++  +++VTWN+++  Y QNG
Sbjct: 15  SFFVLATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNG 74

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
             + +   F  M +     N V+   ++ AC     ++  + Y + A  ++        Y
Sbjct: 75  LLQRSKALFHSMPLR----NVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAA-----SY 125

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP 440
             ++  L+R GR K+A+     +P  P +  + A++ G   ++ VE G   AR +    P
Sbjct: 126 NAIISGLARCGRMKDAQRLFEAMPC-PNVVSYTAMVDG---YARVEGGIGRARALFEAMP 181

Query: 441 EDVS-SYVMLSNALSVAGKWDNVSNIRREMKEK 472
              S S+V++ N L   G  +    +   M +K
Sbjct: 182 RRNSVSWVVMINGLVENGLCEEAWEVFVRMPQK 214


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 165/502 (32%), Positives = 271/502 (53%), Gaps = 41/502 (8%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE-FTF 111
           S SD      ++F   P+ +V    T+I    +    ++++  F  M   +  P + F+F
Sbjct: 50  SLSDSLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSF 109

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
             ++ ++  L  + +G QLH  A   GL +++FVG+ ++ +Y +   +  A +VF++   
Sbjct: 110 AFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPE 169

Query: 172 PNVV-------------------------------SYTTMICGLLKRERFEDALKLFQEM 200
           PN +                               S+  M+ G  K    E A ++F EM
Sbjct: 170 PNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEM 229

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
           P ++ VSW+ MI G++  G  EEA + F E+ R+G+ PN ++L   + A A   AL  GK
Sbjct: 230 PMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGK 289

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK-LTERNIVTWNAVICGYAQN 319
             H    K      V V N+L+  Y+KCG++  + LVF++ + ERNIV+W +++   A +
Sbjct: 290 ILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMH 349

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM--LKP 377
           G GEEAI  F +M  +GIRP+ +  + LL+AC+H GLVE+G  YF + K    GM  ++P
Sbjct: 350 GHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMK----GMYNIEP 405

Query: 378 --EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435
             EHY CMVDL  R+G+ ++A EF+  +P       W+ LLG C +H +V+L E    R+
Sbjct: 406 SIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERL 465

Query: 436 LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG 495
             LDP + S +V+LSNA +VAGKW + +++RR M E+ +T+ PG S IE+   ++ F+ G
Sbjct: 466 SELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAG 525

Query: 496 DRNHHMNDEIYAVLRSCTEQIR 517
            + + + +E Y  L+    ++R
Sbjct: 526 TKQYKITEEAYKKLKEIIRRLR 547



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 138/313 (44%), Gaps = 44/313 (14%)

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAIL-DLYIKLS-SIEEATRVFEDTHNPNVVSYTT 179
           + L   KQ+HA   K+GL+S+ F+   +L    I LS S++ A R+F  T NP+V  + T
Sbjct: 16  KSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNT 75

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           +I GL + +R +D+L  F EM  RN  S                              P+
Sbjct: 76  LIRGLYESDRPQDSLLKFIEM-RRNSFS-----------------------------PPD 105

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             +    + AAAN+ ++ +G   H  A+       +FVG +LIS Y +CG +  +  VFD
Sbjct: 106 SFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFD 165

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ E N + WNA++    + G  +   E F+ M +  +    V L G   A    G +E 
Sbjct: 166 EMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKA----GELEL 221

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP---FDPGIGFWKALL 416
               F +  ++D        ++ M+   + +G F+EA  F  +L      P       +L
Sbjct: 222 AREMFLEMPMKD-----DVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVL 276

Query: 417 GGCQIHSNVELGE 429
             C     +E G+
Sbjct: 277 SACAQAGALEFGK 289


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/519 (31%), Positives = 273/519 (52%), Gaps = 46/519 (8%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C  ++ L + ++ K+H L   + +E             I +  V+C  +          F
Sbjct: 64  CAIKACLDVLEIKKIHGLLFKFGLELD---------VFIGSALVNCYLKFGLMEHAQVAF 114

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           +E+P  +VV    ++  +A+   +E  +  F RM   ++ PS FT   ++     + DLN
Sbjct: 115 EELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLN 174

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
            G+ +H +A K+G  S V V ++++D+Y K   IE                         
Sbjct: 175 NGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIE------------------------- 209

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                 DAL++F+ M  +++ SWN++   + Q G ++  + L   ML  G+ P+  T+  
Sbjct: 210 ------DALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 263

Query: 246 AIIAAANIAALGMGKSFHA-CAVKFLGKL-----DVFVGNSLISFYAKCGSMEDSLLVFD 299
            + A +++AAL  G+  H    V  LGK      DV + N++I  YAKCGSM D+ LVF+
Sbjct: 264 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE 323

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++  +++ +WN +I GY  +G G EA+E F RM    ++P+ VT +G+L AC+H G V +
Sbjct: 324 RMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQ 383

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G ++ +Q K +       EHY C++D+L R+G+  EA E    +P +     W+ALL  C
Sbjct: 384 GRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAAC 443

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H +  L E AA+R+  L+PE   SYV++SN     G+++ V  +R  M+++ + + PG
Sbjct: 444 RLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPG 503

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           CSWIE+K+ VHVFV+ DR H     IYA L S T ++ E
Sbjct: 504 CSWIELKNGVHVFVSADRAHPEAYSIYAGLNSLTARLCE 542



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 194/418 (46%), Gaps = 51/418 (12%)

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           D   ++NV +   II  F      EE    + +M    + P +FTF   I +   + ++ 
Sbjct: 17  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI- 75

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
             K++H    K GL+ +VF+GSA+++ Y+K   +E A   FE                  
Sbjct: 76  --KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFE------------------ 115

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                        E+P R+VV WNAM+ GY+Q G+ E  +  F  M  E +VP+  T+  
Sbjct: 116 -------------ELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTG 162

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            +   A +  L  G+  H  A+K      V V NSLI  Y KC  +ED+L +F+ + E++
Sbjct: 163 ILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKD 222

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YS 362
           I +WN++   + Q G  +  +   +RM   GI+P+ VT+  +L AC+H   +  G   + 
Sbjct: 223 IFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHG 282

Query: 363 YFSQAKLEDPG------MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           Y   + L   G      +LK      ++D+ ++ G  ++A   +++   +  +  W  ++
Sbjct: 283 YMIVSGLGKDGKDIDDVLLK----NAVIDMYAKCGSMRDA-HLVFERMXNKDVASWNIMI 337

Query: 417 GGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            G  +H   N  L  F+    + L P++V ++V + +A S AG      N   +MK K
Sbjct: 338 MGYGMHGYGNEALEMFSRMCEVQLKPDEV-TFVGVLSACSHAGFVSQGRNFLAQMKSK 394


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 179/545 (32%), Positives = 278/545 (51%), Gaps = 53/545 (9%)

Query: 17  LSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCG--------SESDKFSSVHQVFDEV 68
           LSK  SL P   I  Q           + TD +  G        + SD      ++F   
Sbjct: 9   LSKCSSLKPTKQIHAQICKT------GLHTDPLVFGKLLLHCAITISDALHYALRLFHHF 62

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTALEDLNLG 127
           P+ +     T+I   +       +++ F ++     + P  FTF   + +      L  G
Sbjct: 63  PNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPG 122

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
            QLH+ A + G  +++FVG+ ++ +Y +      A RVF++   PNVV++  ++    + 
Sbjct: 123 IQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRC 182

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG--------------RNE----------- 222
              E A  +F  MP RN+ SWN M+ GY++ G              R+E           
Sbjct: 183 GDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFA 242

Query: 223 ------EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV- 275
                 EA   F E+LRE +  N  +L   + A A   A   GK  H    K  G L V 
Sbjct: 243 HNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEK-AGFLYVG 301

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
            V N+LI  Y+KCG++  + LVF  +   R+IV+W ++I G A +G GEEAI+ F  M  
Sbjct: 302 SVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEE 361

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGR 392
           +G+RP+G+T + LL+AC+H+GLVE+G   FS  K+++   ++P  EHY CMVDL  R+ R
Sbjct: 362 SGVRPDGITFISLLYACSHSGLVEEGCGLFS--KMKNLYGIEPAIEHYGCMVDLYGRAAR 419

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452
            ++A EF+ ++P  P    W+ LLG C IH N+E+ E    R+  +DP++   +V+LSN 
Sbjct: 420 LQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNV 479

Query: 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSC 512
            +VAGKW +VS+IRR M E  M + PG S IEI   ++ FV G++ + + +E +  LR  
Sbjct: 480 YAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREI 539

Query: 513 TEQIR 517
             ++R
Sbjct: 540 MLRLR 544


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 262/463 (56%), Gaps = 34/463 (7%)

Query: 58  FSSVHQVFDEVPD-LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVI 115
            S  H+VF ++   +NV    T+I  +A+  +   A+ L+  M     + P   T+  ++
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLL 128

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            +   + D+ LG+ +H+   + G  S ++V +++L LY     +  A +VF+        
Sbjct: 129 KAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFD-------- 180

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                                  +MP +++V+WN++I G+++ G+ EEA+ L+ EM  +G
Sbjct: 181 -----------------------KMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKG 217

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+  T+   + A A I AL +GK FH   +K     ++   N L+  YA+CG +E++ 
Sbjct: 218 IKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTLLGLLWACNHT 354
            +FD++ ++N V+W ++I G A NG G+EAIE F+ M    G+ P  +T +G+L+AC+H 
Sbjct: 278 TLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHC 337

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           G+V++G+ YF +   E     + EH+ CMVDLL+R+G+ K+A E++  +P  P +  W+ 
Sbjct: 338 GMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRT 397

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLG C +H + +L E A  +IL L+P     YV+LSN  +   +W +V  IR++M   G+
Sbjct: 398 LLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGV 457

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +VPG S +E+ ++VH F+ GD++H  ND IYA L+  T+++R
Sbjct: 458 RKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLR 500


>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 253/459 (55%), Gaps = 2/459 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           + S +FS   ++F+ +P    ++  T+I    +    E  + +F  M    + P ++T+ 
Sbjct: 148 TNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREMRESLLEPDQWTYS 207

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           ++I + T   +   G  LH    + G  S +   ++IL LY K  S+ +A +V E T   
Sbjct: 208 ALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDALKVVESTGRL 267

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
             VS+  +I   +K     +A  +FQ +P +N+VSW +MI GY++ G  EEA+  F+ M 
Sbjct: 268 TQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGYARNGYGEEALRFFVAMA 327

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
               +P+  T    + A +++A LG G+  H CA++      ++VGN L++ YAKCG ++
Sbjct: 328 SNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFSTYLYVGNGLVNMYAKCGDLD 387

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S+L F  +  +++V++NA++  +  +G+  EA++ +E M   G +P+ +T +GLL  C+
Sbjct: 388 GSILAFHDICAKDLVSFNALLFAFGLHGKASEALQLYEDMMTCGTKPDKMTFIGLLMTCS 447

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL--YDLPFDPGIG 410
           H+GL+E+G  +F+  K       + +H ACMVD+L R G   EAKE +  Y    D    
Sbjct: 448 HSGLIEEGRLFFNSMKSVHGLSYEADHVACMVDMLGRGGYLAEAKELVKKYSKTSDVEAS 507

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
             +ALLG C  H  VE+G +  + +  L+P    SYV+ SN   V G+W     +R+ M 
Sbjct: 508 SCEALLGACSAHGEVEMGTYLGKTLKTLEPNKEISYVLQSNLYCVRGQWKEAEMVRKAMV 567

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           ++G+ ++PGCSWIE+++KV  FV G+  +   DE+Y  L
Sbjct: 568 DEGLKKMPGCSWIEVRNKVTAFVAGNHLYPYTDELYKTL 606



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 163/346 (47%), Gaps = 31/346 (8%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  +S    S       ++FDE+P+ + V+  ++I  +++   ++EA+ +F +M   N +
Sbjct: 9   TSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRNTNTK 68

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P  FTF + + +         G ++HA    +G  S++ V ++++D+Y K      A +V
Sbjct: 69  PDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAFSAGQV 128

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F++  + N VS+ +++       RF +A ++F  MP +  ++WN MI G  + G  E  +
Sbjct: 129 FKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCL 188

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           ++F EM    L P+  T    I A         G   H   ++      +   NS++S Y
Sbjct: 189 DMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLY 248

Query: 286 AKCGSMEDSL-------------------------------LVFDKLTERNIVTWNAVIC 314
           AK GS+ D+L                               L+F  L E+NIV+W ++I 
Sbjct: 249 AKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMIT 308

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           GYA+NG GEEA+ FF  M  N   P+  T   +L AC+   ++  G
Sbjct: 309 GYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHG 354



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%)

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+   T+ I  L        A KLF EMP+R+ V+WN+MI  YSQ G ++EA+++F +M 
Sbjct: 4   NLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMR 63

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
                P+H T    + A A   +   G   HA  +       + V NSLI  Y KC    
Sbjct: 64  NTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAF 123

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            +  VF ++ + N V+W +++  Y  +GR  EA E F  M
Sbjct: 124 SAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLM 163



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 33/209 (15%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           ++F   S IS     G +  +  +FD++  R+ V WN++I  Y+Q G  +EA+  F +MR
Sbjct: 4   NLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMR 63

Query: 334 INGIRPNGVTLLGLLWACNHTG-----------------------------LVEKGYSYF 364
               +P+  T    L AC   G                             +  K +  F
Sbjct: 64  NTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAF 123

Query: 365 SQAKL-EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           S  ++ ++ G +    +  ++   + SGRF EA E    +P    I  W  ++ G   + 
Sbjct: 124 SAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIA-WNTMIAGLGRYG 182

Query: 424 NVE--LGEFAARRILALDPEDVSSYVMLS 450
            +E  L  F   R   L+P+  +   ++S
Sbjct: 183 EIELCLDMFREMRESLLEPDQWTYSALIS 211


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 157/461 (34%), Positives = 267/461 (57%), Gaps = 9/461 (1%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           +D  +   +VF+ + +    +   +I  +     ++EA+ L  +M  L I+  + T+ ++
Sbjct: 236 NDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTI 295

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSN----VFVGSAILDLYIKLSSIEEATRVFEDTH 170
           I +   +    +GKQ+HA+  K  L  N    + V +A++ LY K + ++EA ++F    
Sbjct: 296 ISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMP 355

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             N++++  ++ G +   R E+A   F+EMP +N+++   MI G +Q G  +E + LF +
Sbjct: 356 VRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQ 415

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  +G  P       A+ A + + AL  G+  HA  V    +  + VGN++IS YAKCG 
Sbjct: 416 MRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGV 475

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E +  VF  +   ++V+WN++I    Q+G G +AIE F++M   G+ P+ +T L +L A
Sbjct: 476 VEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTA 535

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C+H GLVEKG  YF+ + LE  G+   E HYA MVDL  R+G F  A+  +  +P  PG 
Sbjct: 536 CSHAGLVEKGRHYFN-SMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGA 594

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W+ALL GC+IH N++LG  AA ++  L P++  +YV+LSN  +  G+W++V+ +R+ M
Sbjct: 595 PVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLM 654

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           +++ + + P CSWIE+++KVHVF+  D  H    E+ +V R
Sbjct: 655 RDQAVRKEPACSWIEVENKVHVFMVDDDVH---PEVLSVYR 692



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 169/358 (47%), Gaps = 57/358 (15%)

Query: 63  QVFDEVPDLNVVSATTII-----------GR----------------------FAKQHHY 89
           Q+F+E+P+ + ++ TT+I           GR                      +A     
Sbjct: 69  QLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDG 128

Query: 90  EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL--EDLNLGKQLHAWATKVGLQS-NVFVG 146
             A+ LF  M   + RP +FTF SV+ +       +   G Q+H    K G+   +  V 
Sbjct: 129 HSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG-QMHCAVVKTGMGCVSSSVL 187

Query: 147 SAILDLYIK--------LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           +A+L +Y+K         S++  A ++F++    + +++TTMI G ++ +    A ++F+
Sbjct: 188 NALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            M      +WNAMI GY   G  +EA+ L  +M   G+  +  T    I A AN+ +  M
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307

Query: 259 GKSFHACAVKFLGKLD------VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
           GK  HA  +K   +L+      + V N+LI+ Y K   ++++  +F  +  RNI+TWNA+
Sbjct: 308 GKQMHAYILK--NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAI 365

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           + GY   GR EEA  FFE M +     N +TL  ++      G  ++G   F Q +L+
Sbjct: 366 LSGYVNAGRMEEAKSFFEEMPVK----NLLTLTVMISGLAQNGFGDEGLKLFKQMRLD 419



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 150/350 (42%), Gaps = 65/350 (18%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +L + +HA     G +      + +L++Y K S++  A ++FE+  NP+ ++ TT+I  
Sbjct: 29  FSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITA 88

Query: 184 LLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH- 240
                  E   ++F   P   R+ V +NAMI GY+  G    A+ LF  M R+   P+  
Sbjct: 89  YCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDF 148

Query: 241 ---STLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAK--------C 288
              S L   ++   N    G     H   VK  +G +   V N+L+S Y K        C
Sbjct: 149 TFTSVLSALVLFVGNEQQCG---QMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPC 205

Query: 289 GSMEDSLLVFDKLTERNIVT-------------------------------WNAVICGYA 317
            +M  +  +FD++ +R+ +T                               WNA+I GY 
Sbjct: 206 SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYV 265

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGM 374
             G  +EA+    +MR  GI+ + +T   ++ AC + G  + G   ++Y  + +      
Sbjct: 266 HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNE------ 319

Query: 375 LKPEHYAC------MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           L P H  C      ++ L  ++ +  EA++  Y +P    I  W A+L G
Sbjct: 320 LNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSG 368


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 256/458 (55%), Gaps = 4/458 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  NVV+  ++   +      ++ + +F  M+L  ++P   T  S++ + + L+D
Sbjct: 400 VFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQD 459

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK +H +A + G+  +VFV +A+L LY K   + EA  VF+   +  V S+  ++  
Sbjct: 460 LKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTA 519

Query: 184 LLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
               + +E  L +F +M    V    ++W+ +IGG  +  R EEA+ +F +M   G  P+
Sbjct: 520 YFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPD 579

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            +T+   + A +    L MGK  H    +     D+   N+L+  YAKCG +  S  VFD
Sbjct: 580 ETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFD 639

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            +  +++ +WN +I     +G G+EA+  FE+M ++ ++P+  T   +L AC+H+ LVE+
Sbjct: 640 MMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEE 699

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G   F+    +     + EHY C+VD+ SR+G  +EA  F+  +P +P    WKA L GC
Sbjct: 700 GVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGC 759

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +++ NVEL + +A+++  +DP   ++YV L N L  A  W   S IR+ MKE+G+T+ PG
Sbjct: 760 RVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPG 819

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           CSW  + ++VH FV GD+++  +D+IY  L     +I+
Sbjct: 820 CSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIK 857



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 190/399 (47%), Gaps = 52/399 (13%)

Query: 34  ASVQKLETPAIRTDSVSCGSESDK---------------FSSVHQVFDEVPDLNVVSATT 78
           AS   L+      D+  CG  SD                     +VFD++   +VV+  +
Sbjct: 52  ASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNS 111

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +   +      ++ + +F +M L  ++ +  T  S++P  + L+DL  GK++H +  + G
Sbjct: 112 LSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHG 171

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           +  +VFV SA ++ Y K   + EA  VF+                               
Sbjct: 172 MVEDVFVSSAFVNFYAKCLCVREAQTVFD------------------------------- 200

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            MPHR+VV+WN++   Y   G  ++ +N+F EM+ +G+ P+  T+ C + A +++  L  
Sbjct: 201 LMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKS 260

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GK+ H  A+K     +VFV N+L++ Y  C  + ++  VFD +  RN++TWN++   Y  
Sbjct: 261 GKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVN 320

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
            G  ++ +  F  M +NG++P+ + +  +L AC+    ++ G +    A     GM++ +
Sbjct: 321 CGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKH--GMVE-D 377

Query: 379 HYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            + C  +V+L +     +EA+  ++DL     +  W +L
Sbjct: 378 VFVCTALVNLYANCLCVREAQT-VFDLMPHRNVVTWNSL 415



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 150/297 (50%), Gaps = 31/297 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  +VV+  ++   +      ++ + +F  M+L  ++P   T   ++ + + L+D
Sbjct: 198 VFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQD 257

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK +H +A K G+  NVFV +A+++LY     + EA  VF+                
Sbjct: 258 LKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFD---------------- 301

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                           MPHRNV++WN++   Y   G  ++ +N+F EM   G+ P+   +
Sbjct: 302 ---------------LMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAM 346

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A + +  L  GK+ H  AVK     DVFV  +L++ YA C  + ++  VFD +  
Sbjct: 347 SSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPH 406

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           RN+VTWN++   Y   G  ++ +  F  M +NG++P+ VT+L +L AC+    ++ G
Sbjct: 407 RNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSG 463



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 191/431 (44%), Gaps = 77/431 (17%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  NV++  ++   +      ++ + +F  M L  ++P      S++P+ + L+D
Sbjct: 299 VFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKD 358

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK +H +A K G+  +VFV +A+++LY     + EA  VF+                
Sbjct: 359 LKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFD---------------- 402

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                           MPHRNVV+WN++   Y   G  ++ +N+F EM+  G+ P+  T+
Sbjct: 403 ---------------LMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTM 447

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A +++  L  GK  H  AV+     DVFV N+L+S YAKC  + ++ +VFD +  
Sbjct: 448 LSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPH 507

Query: 304 RNIVTWNAVICGY-----------------------------------AQNGRGEEAIEF 328
           R + +WN ++  Y                                    +N R EEA+E 
Sbjct: 508 REVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEI 567

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSY-FSQAKLEDPGMLKPEHYACMV 384
           F +M+  G +P+  T+  +L AC+ +  +  G   + Y F   K  D           +V
Sbjct: 568 FRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNA-----LV 622

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN-VELGEFAARRILALDPEDV 443
           D+ ++ G    ++     +P    +  W  ++    +H N  E      + +L++   D 
Sbjct: 623 DMYAKCGGLSLSRNVFDMMPIK-DVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDS 681

Query: 444 SSYVMLSNALS 454
           +++  + +A S
Sbjct: 682 ATFTCVLSACS 692



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 130/270 (48%), Gaps = 31/270 (11%)

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150
           EAI +++      I+P +  F +V  +  A  D    KQ H  AT+ G+ S+V +G+A +
Sbjct: 23  EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210
             Y K   +E A RVF+D                               +  R+VV+WN+
Sbjct: 83  HAYGKCKCVEGARRVFDD-------------------------------LVARDVVTWNS 111

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           +   Y   G  ++ +N+F +M    +  N  T+   +   +++  L  GK  H   V+  
Sbjct: 112 LSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHG 171

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
              DVFV ++ ++FYAKC  + ++  VFD +  R++VTWN++   Y   G  ++ +  F 
Sbjct: 172 MVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFR 231

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            M ++G++P+ VT+  +L AC+    ++ G
Sbjct: 232 EMVLDGVKPDPVTVSCILSACSDLQDLKSG 261


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 264/465 (56%), Gaps = 30/465 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+  + S   + F+E+P  + V  T++I  F K   +++A+  + +M+  ++   +    
Sbjct: 222 SKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLC 281

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S + + +AL+  + GK LHA   K+G +   F+G+A+ D+Y K   +  A+ VF+  H+ 
Sbjct: 282 STLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQ-IHSD 340

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
            +                             ++VS  A+I GY +  + E+A++ F+++ 
Sbjct: 341 CI-----------------------------SIVSLTAIIDGYVEMDQIEKALSTFVDLR 371

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R G+ PN  T    I A AN A L  G   H   VKF  K D FV ++L+  Y KCG  +
Sbjct: 372 RRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFD 431

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S+ +FD++   + + WN ++  ++Q+G G  AIE F  M   G++PN VT + LL  C+
Sbjct: 432 HSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCS 491

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H G+VE G +YFS  +     + K EHY+C++DLL R+G+ KEA++F+ ++PF+P +  W
Sbjct: 492 HAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGW 551

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            + LG C+IH ++E  +FAA +++ L+PE+  ++V+LSN  +   +W++V ++R+ +K+ 
Sbjct: 552 CSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDG 611

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            M ++PG SW++I++K HVF   D +H    EIY  L +  +QI+
Sbjct: 612 NMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIK 656



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 171/356 (48%), Gaps = 34/356 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD++   N+VS T+II  FA    ++EA+  F +M +     ++F   SV+ + T+L 
Sbjct: 131 KLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLG 190

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +  G Q+H    K G    +FVGS + D+Y K                          C
Sbjct: 191 AIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSK--------------------------C 224

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G L      DA K F+EMP ++ V W +MI G+ + G  ++A+  +++M+ + +  +   
Sbjct: 225 GEL-----SDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHV 279

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A + + A   GKS HA  +K   + + F+GN+L   Y+K G M  +  VF   +
Sbjct: 280 LCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHS 339

Query: 303 E-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           +  +IV+  A+I GY +  + E+A+  F  +R  GI PN  T   L+ AC +   +E G 
Sbjct: 340 DCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGS 399

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
               Q  ++      P   + +VD+  + G F  + + L+D   +P    W  L+G
Sbjct: 400 QLHGQV-VKFNFKRDPFVSSTLVDMYGKCGLFDHSIQ-LFDEIENPDEIAWNTLVG 453



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 124/265 (46%), Gaps = 42/265 (15%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T   +I +    ++LN GKQLHA   + G   N F+ +  L+LY K              
Sbjct: 77  TVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSK-------------- 122

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       CG L     +  +KLF +M  RN+VSW ++I G++   R +EA++ F 
Sbjct: 123 ------------CGEL-----DYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFC 165

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M  EG +     L   + A  ++ A+  G   H   VK     ++FVG++L   Y+KCG
Sbjct: 166 QMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCG 225

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            + D+   F+++  ++ V W ++I G+ +NG  ++A+  + +M  + +  +   L   L 
Sbjct: 226 ELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLS 285

Query: 350 ACN-----------HTGLVEKGYSY 363
           AC+           H  +++ G+ Y
Sbjct: 286 ACSALKASSFGKSLHATILKLGFEY 310


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 259/477 (54%), Gaps = 9/477 (1%)

Query: 48  SVSCG-----SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           S+SC      +E  + +   ++FDE+P  +++S T+++    K  H+ +AI +FS  +  
Sbjct: 54  SISCKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIAS 113

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
             RP  F     + +S  L D  +G  +H    + GL S + V +A++D+Y +    E A
Sbjct: 114 GHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPA 173

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF+     + V++ +M+ G +K    + AL  F +MP ++ VSW A+I G+ Q  +  
Sbjct: 174 RTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPI 233

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A+ LF +ML EG  PNH T+   + A A+I AL +G++ H    K     ++ V N+L+
Sbjct: 234 QALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALM 293

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAK GS+  +  VF+++  ++  TW  +I  +   G G +A+E F  M  +GI PN V
Sbjct: 294 DMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSV 353

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFL 400
           T + +L AC+H GL+++G   F   K+ +   + P  EHY CMVDLL R G  +EA+  +
Sbjct: 354 TFVSVLSACSHAGLIQEGRELFD--KMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALI 411

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             +  +P I  W++LL  C  H N  L E A + I+  +P D   YV+L N  +++ +W 
Sbjct: 412 DHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIKREPGDDGVYVLLWNMYALSNRWK 471

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
              ++R++M  + + + PGCSWIE+   VH F+  D++H    EIY  L      ++
Sbjct: 472 EALDMRKQMLSRKIYKKPGCSWIEVDGVVHEFLVEDKSHDARREIYVTLEIMARHLK 528


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 166/458 (36%), Positives = 257/458 (56%), Gaps = 10/458 (2%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           HQ  D  PDL + +A   I   +     ++A  L+ ++L   I P+EFTF S++ S +  
Sbjct: 86  HQTID--PDLFLFTAA--INTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTK 141

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
                GK +H    K GL  + +V + ++D+Y K   +  A +VF+     ++VS T MI
Sbjct: 142 S----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMI 197

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNH 240
               K+   E A  LF  M  R++VSWN MI GYSQ G   +A+ LF ++L +G   P+ 
Sbjct: 198 TCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDE 257

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+  A+ A + I AL  G+  H        +L+V V  +LI  Y+KCGS+E+++LVF+ 
Sbjct: 258 ITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFND 317

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMR-INGIRPNGVTLLGLLWACNHTGLVEK 359
              ++IV WNA+I GYA +G  ++A+  F+ M+ I G++P  +T +G L AC H GLV +
Sbjct: 318 TPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNE 377

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G   F     E     K EHY C+V LL R+G+ K A E + ++  +     W ++LG C
Sbjct: 378 GIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSC 437

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H    LG+  A  ++  +  +   YV+LSN  ++ G ++ V+ +R  MKEKG+ + PG
Sbjct: 438 KLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPG 497

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            S IEI +KVH F  GDR H  + EIY +LR  +E+I+
Sbjct: 498 ISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIK 535



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 38/244 (15%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P + T  V   ++     S  +VFD +P+ ++VS+T +I  +AKQ + E A  LF RM  
Sbjct: 159 PYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCE 218

Query: 102 LNI--------------------------------RPSEFTFGSVIPSSTALEDLNLGKQ 129
            +I                                +P E T  + + + + +  L  G+ 
Sbjct: 219 RDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRW 278

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +H +     ++ NV V +A++D+Y K  S+EEA  VF DT   ++V++  MI G      
Sbjct: 279 IHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGY 338

Query: 190 FEDALKLFQEMP-----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTL 243
            +DAL+LF EM          +++   +   +  G   E + +F  M +E G+ P     
Sbjct: 339 SQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHY 398

Query: 244 PCAI 247
            C +
Sbjct: 399 GCLV 402


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 254/461 (55%), Gaps = 44/461 (9%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTFGSVIPSSTA 120
            QVFD++P  N+ +  T+I  +A   +  +++ +F RML  +   P +FTF  +I +++ 
Sbjct: 89  QQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           LE+L  GK  H    KV L S+VF+ ++++  Y K   +    RVF +            
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNX----------- 197

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                               P R+VVSWN+MI  + Q G  EEA+ LF EM  + + PN 
Sbjct: 198 --------------------PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNG 237

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A A  +    G+  H+   +      + + N+++  Y KCGS+ED+  +FDK
Sbjct: 238 ITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDK 297

Query: 301 LTERNIVTWNAVICGYAQ------------NGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           + E++IV+W  ++ GYA+            +G G++AI  F +M+ + ++PN VT   +L
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNIL 357

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+H GLVE+G ++F+Q +L    +   +HYACMVD+L R+G  +EA E +  +P  P 
Sbjct: 358 CACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPA 417

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W ALLG C IH NV L E A  +++ L+P +  +YV+LSN  + AGKWD VS +R+ 
Sbjct: 418 ASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKL 477

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           M++ G+ + PGCS IE+   VH F+ GD +H    +IYA L
Sbjct: 478 MRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKL 518



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 136/250 (54%), Gaps = 14/250 (5%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAIIAAA 251
           A ++F ++PH N+ +WN +I  Y+ +    +++ +F+ ML +    P+  T P  I AA+
Sbjct: 88  AQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAAS 147

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            +  L  GK+FH   +K L   DVF+ NSLI FYAKCG +     VF     R++V+WN+
Sbjct: 148 ELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNS 207

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAK 368
           +I  + Q G  EEA+E F+ M    ++PNG+T++G+L AC      E G   +SY  + +
Sbjct: 208 MITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR 267

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
           + +   L       M+D+ ++ G  ++AK     +P +  I  W  +L G       ++G
Sbjct: 268 IXESLTLS----NAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTMLVG-----YAKIG 317

Query: 429 EFAARRILAL 438
           E+ A + LA+
Sbjct: 318 EYDAAQGLAM 327


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 156/496 (31%), Positives = 272/496 (54%)

Query: 5   LCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQV 64
           L + +S  S + L  +H       + +      +L   A+  D  +    ++     + +
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGI 75

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F ++ + N+     +I  F+      +A   +++ML   I P   TF  +I +ST +E +
Sbjct: 76  FSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECV 135

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            +G+Q H+   + G Q++V+V ++++ +Y     I  A R+F      +VVS+T+M+ G 
Sbjct: 136 VVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGY 195

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
            K    EDA ++F EMPHRN+ +W+ MI GY++    E+A++LF  M REG+V N + + 
Sbjct: 196 CKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMV 255

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             I + A++ AL  G+  H   VK    +++ +G +L+  Y +CG +E ++ VF++L ++
Sbjct: 256 SVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDK 315

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           + ++W+++I G A +G   +AI +F +M   G  P  +TL  +L AC+H GLV+KG   +
Sbjct: 316 DSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIY 375

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
              K +     + EHY C+VD+L R+G+  EA+ F+  +P  P      ALLG C+I+ N
Sbjct: 376 ENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKN 435

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
            E+ E     ++ + PE    YV+LSN  + AG+W+ + ++R  MKEK + + PG S IE
Sbjct: 436 TEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIE 495

Query: 485 IKSKVHVFVTGDRNHH 500
           I  K++ F  GD   H
Sbjct: 496 IDGKINKFSMGDDQKH 511


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 171/560 (30%), Positives = 279/560 (49%), Gaps = 47/560 (8%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYL-IETQKASVQKLETPAIRTDSVSCGSESDKFS 59
           +++L+  CR+   L  L   H+     L + +  AS       A+R   +   +      
Sbjct: 18  LLRLVDSCRAPAHLRSLRAAHARLLFLLRLPSHPASA------AVRVKLIQAYAACAALP 71

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPS 117
           +   V D  PD   V    ++        + +A+ LF+ M        P  +T+   + S
Sbjct: 72  AARAVLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKS 131

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             A + L LG+Q+H+   ++GL  NVFV  + + +Y +    ++A ++FE+    +VVS+
Sbjct: 132 CAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSW 191

Query: 178 TTMICGL-----------------------------------LKRERFEDALKL---FQE 199
             MI G                                    + + R ED   L   F E
Sbjct: 192 NAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDE 251

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  + ++SWNAM+  Y+    + EAV LF+ M ++G+ P+  TL   + +   ++AL +G
Sbjct: 252 MRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLG 311

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           K  H    +      + + N+L+  YA CG ++++  VFD +  R++V+W ++I  Y ++
Sbjct: 312 KRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRH 371

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
           G G EAI+ FE+M   G+ P+ +  + +L AC+H GL++ G  YF     E     K EH
Sbjct: 372 GHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEH 431

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
           YACMVDLL R+G  +EA +F+  +P  P    W ALLG C+IHSN+++G  AA  +L L 
Sbjct: 432 YACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLA 491

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           P+    YV+LSN  + AG+W +VS +R  M+ KG+ ++PG S  E+  +VH F  GD +H
Sbjct: 492 PKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSH 551

Query: 500 HMNDEIYAVLRSCTEQIREF 519
             +  IY  L     +IRE 
Sbjct: 552 PQSKMIYKKLSELLRRIREM 571


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 263/469 (56%), Gaps = 39/469 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS      +   +FD +    VVS  +++  + +    E+AI +F +ML   I P+  T
Sbjct: 296 CGS----VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
               + +   L DL  GK +H +  ++ L S++ V ++++ +Y K   ++ A+ +F + +
Sbjct: 352 IMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLN 411

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                           R  VSWNAMI GY+Q GR  EA+N F E
Sbjct: 412 G-------------------------------RTHVSWNAMILGYAQNGRVSEALNCFSE 440

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   G+ P+  T+   I A A ++     K  H   ++     ++FV  +L+  Y+KCG+
Sbjct: 441 MKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGA 500

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  +FD +++R+++TWNA+I GY  +G G  A++ F++M+   + PN +T L ++ A
Sbjct: 501 IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISA 560

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C+H+GLV++G  +F   K +D G L+P  +HY  MVDLL R+GR KEA +F+ ++P  PG
Sbjct: 561 CSHSGLVDEGLRHFKSMK-QDYG-LEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPG 618

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           I  + A+LG C+IH N+E+GE AA+++  L+P++   +V+L+N  +   KW  V+ +R+ 
Sbjct: 619 ITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKT 678

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M++KG+ + PGCS +E++++VH F +G   H  +  IYA L     +I+
Sbjct: 679 MEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIK 727



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 198/413 (47%), Gaps = 48/413 (11%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104
           +T  VS  S+    +   +VF+ + D       T++  +AK    E A+    RM   ++
Sbjct: 84  QTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDV 143

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           +P  + F  ++       DL  GK++H         +NVF  + ++++Y K   I+    
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQID---- 199

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
                                      DA K+F  MP R++VSWN +I G+SQ G  ++A
Sbjct: 200 ---------------------------DAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLIS 283
           + L + M  EG  P+  TL   + AAA++  L +GKS H  A++    KL V +  +L  
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL-VNISTALAD 291

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCGS+E + L+FD + ++ +V+WN+++ GY QNG  E+AI  FE+M   GI P GVT
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 344 LLGLLWACNHTGLVEKG---YSYFSQAKL-EDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           ++  L AC   G +E+G   + +  Q  L  D  ++       ++ + S+  R   A + 
Sbjct: 352 IMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN-----SLISMYSKCKRVDIASDI 406

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
             +L     +  W A++ G   +  V   L  F+  + L + P+   S+ M+S
Sbjct: 407 FNNLNGRTHVS-WNAMILGYAQNGRVSEALNCFSEMKSLGMKPD---SFTMVS 455



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 5/196 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+  +      +F+ +     VS   +I  +A+     EA+  FS M  L ++P  
Sbjct: 391 ISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDS 450

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  SVIP+   L      K +H    +  L  N+FV +A++D+Y K  +I  A ++F+ 
Sbjct: 451 FTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEA 224
             + +V+++  MI G         AL LF +M       N +++ ++I   S +G  +E 
Sbjct: 511 ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEG 570

Query: 225 VNLFIEMLRE-GLVPN 239
           +  F  M ++ GL P+
Sbjct: 571 LRHFKSMKQDYGLEPS 586


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 255/460 (55%), Gaps = 37/460 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD + + ++VS  T+IG + +     EA+ +F  M     + SEFT  SV+ +     
Sbjct: 109 QVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNC 168

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D    K+LH  + K  +  N++VG+A+LDLY K                          C
Sbjct: 169 DALECKKLHCLSVKTCIDLNLYVGTALLDLYAK--------------------------C 202

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G++K     DA+++F+ M  ++ V+W++M+ GY Q    EEA+ L+    R  L  N  T
Sbjct: 203 GMIK-----DAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFT 257

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   I A +N+AAL  GK  HA   K     +VFV +S +  YAKCGS+ +S ++F ++ 
Sbjct: 258 LSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ 317

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+N+  WN +I G+A++ R +E +  FE+M+ +G+ PN VT   LL  C HTGLVE+G  
Sbjct: 318 EKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRR 377

Query: 363 YFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           +F   +      P ++   HY+CMVD+L R+G   EA E +  +PFDP    W +LL  C
Sbjct: 378 FFKLMRTTYGLSPNVV---HYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASC 434

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +++ N+EL E AA ++  L+PE+  ++V+LSN  +   +W+ ++  R+ +++  + +V G
Sbjct: 435 RVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRG 494

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            SWI+IK KVH F  G+  H    EI + L +   + R+F
Sbjct: 495 KSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKF 534



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 148/302 (49%), Gaps = 17/302 (5%)

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           NV+      CG +     E A ++F  M  R++VSWN MIG Y++     EA+++F+EM 
Sbjct: 92  NVLINAYSKCGFV-----ELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMR 146

Query: 233 REGLVPNHSTLPCAIIA-AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            EG   +  T+   + A   N  AL   K  H  +VK    L+++VG +L+  YAKCG +
Sbjct: 147 NEGFKFSEFTISSVLSACGVNCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMI 205

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +D++ VF+ + +++ VTW++++ GY QN   EEA+  + R +   +  N  TL  ++ AC
Sbjct: 206 KDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICAC 265

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           ++   + +G      A +   G       A   VD+ ++ G  +E+     ++  +  + 
Sbjct: 266 SNLAALIEGKQM--HAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ-EKNLE 322

Query: 411 FWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
            W  ++ G   H+  +  +  F   +   + P +V+     S+ LSV G    V   RR 
Sbjct: 323 LWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT----FSSLLSVCGHTGLVEEGRRF 378

Query: 469 MK 470
            K
Sbjct: 379 FK 380



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 6/186 (3%)

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A   A+   K+ H   ++   + DV + N LI+ Y+KCG +E +  VFD + ER++V+WN
Sbjct: 64  ARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWN 123

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC--NHTGLVEKGYSYFSQAK 368
            +I  Y +N    EA++ F  MR  G + +  T+  +L AC  N   L  K     S   
Sbjct: 124 TMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKT 183

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
             D  +        ++DL ++ G  K+A +    +  D     W +++ G   + N E  
Sbjct: 184 CIDLNLYVG---TALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAGYVQNKNYEEA 239

Query: 429 EFAARR 434
               RR
Sbjct: 240 LLLYRR 245


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 174/513 (33%), Positives = 275/513 (53%), Gaps = 20/513 (3%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           S+++L + HS     +I    +S   L  P I  +  +  S SD  +   ++FD +P  +
Sbjct: 34  SMSQLRQYHS----QIIRLGLSSHNHLIPPLI--NFCARASTSDALTYALKLFDSIPQPD 87

Query: 73  VVSATTIIGRFAKQH--HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
                TII  F           + L+S ML  ++ P+ FTF S++    A   +  G Q+
Sbjct: 88  AFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLL---IACRKIQHGMQI 144

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           HA   K G  ++    ++++ +Y+   ++EEA RVF    +P+ VS+T++I G  K    
Sbjct: 145 HAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLI 204

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAIIA 249
           ++A  +FQ MP +N  SWNAM+  Y QT R  EA  LF  M  E   V +       + A
Sbjct: 205 DEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSA 264

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIV 307
              + AL  GK  H    +   +LD  +  +++  Y KCG +E +L VF  L    R I 
Sbjct: 265 CTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWIS 324

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS-- 365
           +WN +I G A +G GE AI+ F+ M    + P+ +T L LL AC H+GLVE+G +YFS  
Sbjct: 325 SWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYM 384

Query: 366 -QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            +    +P M   EH+ CMVDLL R+G   EA++ + ++P  P +     LLG C+ H N
Sbjct: 385 IRVYGIEPRM---EHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRN 441

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           +ELGE   RR++ L+P +   YV+L+N  + AGKW++ + +R+ M ++G+ + PG S IE
Sbjct: 442 IELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIE 501

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           ++  VH F+ G+RNH    E++A +    E ++
Sbjct: 502 LQGTVHEFIAGERNHPQAKELHAKVYEMLEHLK 534


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 248/456 (54%), Gaps = 32/456 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F E    +VVS T +I    +     EA+  F  M    +   E T  SV+ ++  L 
Sbjct: 159 RLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLR 218

Query: 123 DLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           D+  G+ +H +  + G +  +V+VGSA++D+Y K                          
Sbjct: 219 DVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSK-------------------------- 252

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG       +DA+K+F EMP RN+VSW A+I GY Q  R +EA+ +F EM+ EG+ PN S
Sbjct: 253 CGYC-----DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQS 307

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+  A+ A A + +L  G+  H    +    L+  +G +L+  Y+KCG ++++LLVF+KL
Sbjct: 308 TVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKL 367

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             +++  W A+I G A  G    ++  F +M  + ++PNGVT LG+L AC H GLV++G 
Sbjct: 368 PAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGL 427

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
             F     +       +HY CMVDLL R+GR +EA +F+  +P +P  G W AL  GC I
Sbjct: 428 ELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMI 487

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H   ELGE     ++ L P     Y++L+N  S   KW+  +N+RR MK KG+ + P CS
Sbjct: 488 HKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACS 547

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           WIE+   +H F+  D++H  +  +Y +L S T Q++
Sbjct: 548 WIEVNGVIHEFIAFDKSHIESINVYMMLGSVTAQLK 583



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
           L LF  +    +  WN ++  +S + + +  +  +  +   G++P+  T P  + A + +
Sbjct: 58  LLLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKL 117

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
                 + F+A  VKF    D FV NSL+S +A CG ++ S  +F +  ++++V+W A+I
Sbjct: 118 RNENPFQ-FYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALI 176

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            G  +NGR  EA+E F  MR +G+  + VT++ +L  C    L +  +  +      + G
Sbjct: 177 NGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVL--CAAAMLRDVWFGRWVHGFYVESG 234

Query: 374 MLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            +  + Y  + +VD+ S+ G   +A +   ++P    +  W AL+ G
Sbjct: 235 RVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVS-WGALIAG 280


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/447 (35%), Positives = 248/447 (55%), Gaps = 30/447 (6%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           VS  ++I  + +     +A+ L+  M+    +   FT  SV+ + T+L+ L  G+Q H  
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             K G   N  VGS ++D Y K                          CG   R+   D+
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSK--------------------------CG--GRDGMSDS 297

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRN-EEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
            K+FQE+   ++V WN MI GYS    + EEAV  F +M R G  P+  +  C   A +N
Sbjct: 298 EKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN 357

Query: 253 IAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +++   GK  H  A+K  +    + V N+LIS Y K G++ D+  VFD++ E N V++N 
Sbjct: 358 LSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNC 417

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I GYAQ+G G EA+  ++RM  +GI PN +T + +L AC H G V++G  YF+  K   
Sbjct: 418 MIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETF 477

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
               + EHY+CM+DLL R+G+ +EA+ F+  +P+ PG   W ALLG C+ H N+ L E A
Sbjct: 478 KIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERA 537

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491
           A+ ++ + P   + YVML+N  + AGKW+ ++++R+ M+ K + + PGCSWIE+K K HV
Sbjct: 538 AKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHV 597

Query: 492 FVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           FV  D +H M  E+   L    +++++
Sbjct: 598 FVAEDWSHPMIREVNEYLEEMMKKMKK 624



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 161/354 (45%), Gaps = 16/354 (4%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           +F  ++  S A  DL  GK LHA   K  + S+ ++ +  ++LY K   +  A   F+ T
Sbjct: 10  SFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDST 69

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
             PNV SY  ++    K  +   A +LF E P  + VS+N +I GY+       A+ LF 
Sbjct: 70  EEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFK 129

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF--VGNSLISFYAK 287
            M   G   +  TL   I A  +   + + K  H  AV   G  D +  V N+ +++Y+K
Sbjct: 130 RMRELGFEVDGFTLSGLIAACCD--RVDLIKQLHCFAVS--GGFDSYSSVNNAFVTYYSK 185

Query: 288 CGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
            G + +++ VF  +   R+ V+WN++I  Y Q+  G +A+  ++ M   G + +  TL  
Sbjct: 186 GGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLAS 245

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFK--EAKEFLYDL 403
           +L A      +  G  +    KL   G  +  H    ++D  S+ G        E ++  
Sbjct: 246 VLNALTSLDHLIGGRQF--HGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQE 303

Query: 404 PFDPGIGFWKALLGGCQI---HSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
              P +  W  ++ G  +   HS   +  F   + +   P+D  S+V +++A S
Sbjct: 304 ILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDC-SFVCVTSACS 356



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 13/225 (5%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           C +  S ++  ++H LA    I + + SV            +S   +S       +VFD 
Sbjct: 355 CSNLSSPSQGKQIHGLAIKSNIPSNRISVN--------NALISLYYKSGNLLDARRVFDR 406

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P+LN VS   +I  +A+  H  EA+ L+ RML   I P+  TF +++ +      ++ G
Sbjct: 407 MPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEG 466

Query: 128 -KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSYTTMICGLL 185
            K  +       ++      S ++DL  +   +EEA R  +   + P  V++  ++    
Sbjct: 467 QKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACR 526

Query: 186 KRERF---EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           K +     E A K    M       +  +   Y+  G+ EE  ++
Sbjct: 527 KHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASV 571



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 50/142 (35%)

Query: 260 KSFHACAVKFLGKLDVFVGNSL-------------------ISFYAKCGSMEDSLLVFDK 300
           KSF    +K + + D+F G SL                   ++ Y+KCG +  +   FD 
Sbjct: 9   KSFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDS 68

Query: 301 LTERNI-------------------------------VTWNAVICGYAQNGRGEEAIEFF 329
             E N+                               V++N +I GYA       A+  F
Sbjct: 69  TEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLF 128

Query: 330 ERMRINGIRPNGVTLLGLLWAC 351
           +RMR  G   +G TL GL+ AC
Sbjct: 129 KRMRELGFEVDGFTLSGLIAAC 150


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 251/468 (53%), Gaps = 36/468 (7%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSE 108
           +CGS    F     VFDE    +VV+   +I     +   E+A  L   M  L N+RP E
Sbjct: 158 NCGS----FGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDE 213

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  S++P+   L +L  GK LH+++ ++GL  N+ V +AILD+Y K   IE A  VF  
Sbjct: 214 VTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVF-- 271

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                          +  ++V+SW +M+ G +++G  +EA+ LF
Sbjct: 272 -----------------------------NRIREKDVLSWTSMLSGLAKSGYFQEALALF 302

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M    +  +  TL   + A A   AL  GK  H    KF    D+ +  +L+  YAKC
Sbjct: 303 QKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKC 362

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS++ +L VF ++  RN+ TWNA+I G A +G GE+AI  F++M  + + P+ VT + LL
Sbjct: 363 GSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALL 422

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC+H GLV++G + F   K +     + EHY C+VDLL R+ +  +A  F+ ++P    
Sbjct: 423 CACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKAN 482

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W  LLG C+   + +L E   RR++ L+P+    YVMLSN  +   +WD+   +R++
Sbjct: 483 SVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQ 542

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           MK KG+ + PGCSWIE+   +H FV GDR+H   ++IYA++   T ++
Sbjct: 543 MKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRV 590



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 202/424 (47%), Gaps = 39/424 (9%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S S   +   ++F ++ + +     T+I  +A+  +  EA+ L+  M+   +    +T+ 
Sbjct: 56  SHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYP 115

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+ +   L  + LG++ H    K G  S++FV +A++  Y    S   A  VF+++   
Sbjct: 116 FVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVR 175

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +VV++  MI   L +                               G +E+A +L  EM 
Sbjct: 176 DVVTWNIMINAHLNK-------------------------------GLSEKAFDLLDEMT 204

Query: 233 R-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           + + L P+  T+   + A A +  L  GK  H+ + +     ++ V N+++  Y KC  +
Sbjct: 205 KLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDI 264

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           E +  VF+++ E+++++W +++ G A++G  +EA+  F++M++N I  + +TL+G+L AC
Sbjct: 265 ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSAC 324

Query: 352 NHTGLVEKG-YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
             TG +++G Y +    K E    L  E    +VD+ ++ G    A +    +     + 
Sbjct: 325 AQTGALDQGKYIHLLIDKFEINCDLVLE--TALVDMYAKCGSIDLALQVFRRMRV-RNVF 381

Query: 411 FWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
            W AL+GG  +H + E  +  F       L P+DV +++ L  A S AG  D    + + 
Sbjct: 382 TWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDV-TFIALLCACSHAGLVDEGLAMFQA 440

Query: 469 MKEK 472
           MK K
Sbjct: 441 MKNK 444



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 131/253 (51%), Gaps = 9/253 (3%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           HNP   S       L        A KLF +M + +    N MI GY+++    EAV+L+ 
Sbjct: 41  HNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYY 100

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            M+  G+  ++ T P  + A A + A+ +G+ FH   +K     D+FV N+LI FY  CG
Sbjct: 101 FMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCG 160

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLL 348
           S   +  VFD+ T R++VTWN +I  +   G  E+A +  + M +++ +RP+ VT++ L+
Sbjct: 161 SFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLV 220

Query: 349 WACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            AC   G +E+G   +SY  +  L++   +       ++D+  +    + A+E +++   
Sbjct: 221 PACAQLGNLERGKFLHSYSKELGLDENLRVNNA----ILDMYCKCDDIESAQE-VFNRIR 275

Query: 406 DPGIGFWKALLGG 418
           +  +  W ++L G
Sbjct: 276 EKDVLSWTSMLSG 288


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 155/481 (32%), Positives = 260/481 (54%), Gaps = 54/481 (11%)

Query: 41  TPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           T ++RT  VS  SE     SV ++F+ +P+ ++VS  TII   A+   YEE + +   M 
Sbjct: 178 TRSVRT--VSVLSED----SVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMG 231

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
             N++P  FT  SV+P      D++ GK++H  + + GL ++++V S+++D+Y K +   
Sbjct: 232 GANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT--- 288

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                       R  D+ ++F  +  R+ +SWN++I G  Q G 
Sbjct: 289 ----------------------------RVADSCRVFTLLTERDGISWNSIIAGCVQNGL 320

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            +E +  F +ML   + P   +    + A A++  L +GK  H    +     ++F+ +S
Sbjct: 321 FDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASS 380

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L+  YAKCG++  +  +FD++  R++V+W A+I G A +G+  +AIE FE+M   GI+PN
Sbjct: 381 LVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPN 440

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAK 397
            V  + +L AC+H GLV++ + YF+    +    PG+   EHYA + DLL R+GR +EA 
Sbjct: 441 HVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGV---EHYAAVSDLLGRAGRLEEAY 497

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           +F+  +   P    W  LL  C++H N+++ E  A RIL +DP +  +Y++L+N  S A 
Sbjct: 498 DFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAAR 557

Query: 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +W   +  R  M+  G+ + P CSWIE+K+KV+ F+ GD +H            C E+IR
Sbjct: 558 RWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESH-----------PCYEKIR 606

Query: 518 E 518
           E
Sbjct: 607 E 607



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 176/339 (51%), Gaps = 25/339 (7%)

Query: 96  FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
           F  ML   + P    F SV+ S   L DLNLG+ LH +  +VGL  +++ G+A++++Y K
Sbjct: 94  FIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSK 153

Query: 156 LSSIEEATR-------VFED-THNPNVVSYTTMICGLLKRERFEDAL-KLFQEMPHRNVV 206
           L  +EE+ R       VF++ T     V   +++         ED++ K+F+ MP +++V
Sbjct: 154 LRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLS--------EDSVRKIFEMMPEKDLV 205

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           SWN +I G ++ G  EE + +  EM    L P+  TL   +   A    +  GK  H C+
Sbjct: 206 SWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCS 265

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           ++     D++V +SLI  YAKC  + DS  VF  LTER+ ++WN++I G  QNG  +E +
Sbjct: 266 IRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGL 325

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACM 383
            FF +M +  I+P   +   ++ AC H   +  G   + Y ++   ++   +     + +
Sbjct: 326 RFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIA----SSL 381

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           VD+ ++ G  + AK+    +     +  W A++ GC +H
Sbjct: 382 VDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALH 419



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 118/264 (44%), Gaps = 38/264 (14%)

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
             D+L+LF  +     ++W ++I  Y+  G   +++  FI ML  GL P+H+  P  + +
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL-------VFDKLT 302
            A +  L +G+S H   ++     D++ GN+L++ Y+K   +E+S         VFD++T
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMT 175

Query: 303 ER-------------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           ER                         ++V+WN +I G A+NG  EE +     M    +
Sbjct: 176 ERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANL 235

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKE 395
           +P+  TL  +L        + +G      +  +    L  + Y  + ++D+ ++  R  +
Sbjct: 236 KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQG---LDADIYVASSLIDMYAKCTRVAD 292

Query: 396 AKEFLYDLPFDPGIGFWKALLGGC 419
           +      L    GI  W +++ GC
Sbjct: 293 SCRVFTLLTERDGIS-WNSIIAGC 315


>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
 gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
          Length = 485

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 151/389 (38%), Positives = 234/389 (60%), Gaps = 9/389 (2%)

Query: 127 GKQLHAWATKVGLQ---SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +Q+HA   K G+    S+V V ++++  Y +L  + +A +VF+   +  VV++  ++  
Sbjct: 76  AEQIHALLVKSGVPRTVSDVQVSTSLIRAYARLGRVCDARKVFDGMPDRTVVTWNVLLDA 135

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNHST 242
           L++    + A ++F EMP RNVVSWN +I G+++ G  +EAV+LF+EM +  GL P+ +T
Sbjct: 136 LVRDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEAT 195

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A  +I  LG+GKS H   ++    LD  +G +LIS Y +CGSM  +   F  +T
Sbjct: 196 MVGFVSAVRDIGLLGIGKSAHGYVLRREFSLDGALGVALISMYTRCGSMGAAHSCFLSVT 255

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +N+  W ++I G+A +G+ E+A+  F  MR  GI PNGVT + +L ACNH GLV +G+ 
Sbjct: 256 TKNVEHWTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFK 315

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF    L     ++P  +HY C+VDLL R+G  KEA     +LP DPG   W +LL  C 
Sbjct: 316 YFD---LMRSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACH 372

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            H +VE+ E  A ++    P   SSYV+LSN  + A +W+++   RR M+E G+T+ PG 
Sbjct: 373 SHGDVEMAELTASKLADAKPSHGSSYVLLSNTYARAKQWEDLRRTRRRMEEHGVTKKPGL 432

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           SWIE+   VH F T D+ H  +++IY +L
Sbjct: 433 SWIEVDGGVHSFATADKLHMESEDIYQML 461



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 5/181 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTAL 121
           +VF E+P  NVVS  TII  F +    +EA+ LF  M +   + P E T    + +   +
Sbjct: 147 EVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMVGFVSAVRDI 206

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L +GK  H +  +     +  +G A++ +Y +  S+  A   F      NV  +T++I
Sbjct: 207 GLLGIGKSAHGYVLRREFSLDGALGVALISMYTRCGSMGAAHSCFLSVTTKNVEHWTSLI 266

Query: 182 CGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            G     + E AL+LF EM       N V++ A++   +  G   E    F  M   G+ 
Sbjct: 267 AGFAAHGQPEKALRLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFKYFDLMRSMGIR 326

Query: 238 P 238
           P
Sbjct: 327 P 327


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 165/517 (31%), Positives = 275/517 (53%), Gaps = 50/517 (9%)

Query: 52  GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           G E  +  S  ++FD++ D +V+S  ++I  +      E  + ++ +M+ L I     T 
Sbjct: 195 GIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATI 254

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            SV+        L+LGK +H+ A K   +  +   + +LD+Y K   ++ A RVFE    
Sbjct: 255 ISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHR---------------------------- 203
            NVVS+T+MI G  +  R + A++L Q+M                               
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDV 374

Query: 204 -----------NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV----------PNHST 242
                      N+   NA++  Y++ G  + A ++F  M+ + ++          P+  T
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRT 434

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           + C + A A+++AL  GK  H   ++     D  V N+L+  Y KCG +  + L+FD + 
Sbjct: 435 MACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +++V+W  +I GY  +G G EAI  F  MR  GI P+ V+ + +L+AC+H+GL+E+G+ 
Sbjct: 495 SKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           +F   K +     K EHYACMVDLLSR+G   +A EF+  LP  P    W ALL GC+I+
Sbjct: 555 FFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIY 614

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            ++EL E  A R+  L+PE+   YV+L+N  + A KW+ V  +R ++ +KG+ + PGCSW
Sbjct: 615 HDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSW 674

Query: 483 IEIKSKVHVFVTGDRNHH-MNDEIYAVLRSCTEQIRE 518
           IEIK KV++FV+G+ + H  + +I ++L+    +++E
Sbjct: 675 IEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKE 711



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 159/330 (48%), Gaps = 26/330 (7%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T+ SV+      + L  GK++H+      +  +  +G  ++ LY     ++E  RVF+  
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 170 HNPNVVSYTTMICGLLK--------------------RERFEDALKLFQEMPHRNVVSWN 209
              NV  +  M+    K                     +R E A +LF ++  R+V+SWN
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
           +MI GY   G  E  + ++ +M+  G+  + +T+   ++  AN   L +GK+ H+ A+K 
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
             +  +   N+L+  Y+KCG ++ +L VF+K+ ERN+V+W ++I GY ++GR + AI   
Sbjct: 281 TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLL 340

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLL 387
           ++M   G++ + V    +L AC  +G ++ G       K  +   ++   + C  ++D+ 
Sbjct: 341 QQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANN---MESNLFVCNALMDMY 397

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           ++ G    A      +     I  W  ++G
Sbjct: 398 TKCGSMDGANSVFSTMVVKDIIS-WNTMIG 426


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 267/491 (54%), Gaps = 7/491 (1%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLN 72
           SL   ++L SL     +  Q         P + +  V   ++   F    +VF  + D N
Sbjct: 297 SLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRN 356

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132
            VS T +IG F +   + E++ LF++M    +   +F   ++I       D+ LG QLH+
Sbjct: 357 SVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHS 416

Query: 133 WATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFED 192
              K G    V V ++++ +Y K  +++ A  +F      ++VS+T MI    +      
Sbjct: 417 LCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAK 476

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIAAA 251
           A + F +M  RNV++WNAM+G Y Q G  E+ + ++ +ML E  ++P+  T        A
Sbjct: 477 AREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCA 536

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +I A  +G       VK    LD  V N++I+ Y+KCG + ++   FD L+ +++V+WNA
Sbjct: 537 DIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNA 596

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE- 370
           +I GY+Q+G G++AIE F+ +   G +P+ ++ + +L  C+H+GLVE+G  YF   K + 
Sbjct: 597 MITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDH 656

Query: 371 --DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
              PG+   EH++CMVDLL R+G   EAK  + ++P  P    W ALL  C+ H N +L 
Sbjct: 657 NISPGL---EHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLA 713

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
           E AA+ +  LD      Y++L+   + AGK D+ + +R+ M++KG+ + PG SW+E+ ++
Sbjct: 714 ELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNR 773

Query: 489 VHVFVTGDRNH 499
           VHVF   D +H
Sbjct: 774 VHVFKAEDVSH 784



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 192/379 (50%), Gaps = 40/379 (10%)

Query: 8   CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           C +  +L     LHS     LI    ASV  L+   +    +SCG+ SD   + + + DE
Sbjct: 35  CGARSALTGARTLHS----RLINVGLASVVFLQNTLLHA-YLSCGALSD---ARNLLRDE 86

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM--------------------------LL 101
           + + NV++   ++  +AK     +A+ LF RM                          + 
Sbjct: 87  ITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIF 146

Query: 102 LNIR------PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155
           +++R      P+ FTFG V+ S  AL    +  QL    +K   Q +  V +A++D+ ++
Sbjct: 147 VSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVR 206

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
             +++ A++ F    NP ++   +M+ G  K    + AL++F+ MP R+VVSWN +I   
Sbjct: 207 CGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISAL 266

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
           S++GR  EA+++ ++M  +G+ P+ +T   ++ A A +++L  GK  H   ++ L  +D 
Sbjct: 267 SKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDP 326

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           +V ++++  YAKCG  +++  VF  L +RN V+W  +I G+ Q G   E++E F +MR  
Sbjct: 327 YVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAE 386

Query: 336 GIRPNGVTLLGLLWACNHT 354
            +  +   L  L+  C +T
Sbjct: 387 LMAVDQFALATLISGCCNT 405



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 159/348 (45%), Gaps = 49/348 (14%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED-T 169
               + S  A   L   + LH+    VGL S VF+ + +L  Y+   ++ +A  +  D  
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
             PNV+++  M+ G  K     DA++LF  MP R+V SWN ++ GY Q+G+   A+++F+
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 230 EMLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF-------VGNSL 281
            M + G  +PN  T  C +    +  ALG    +H  A++ LG L  F       V  +L
Sbjct: 148 SMRQTGDSLPNAFTFGCVM---KSCGALG----WHEVALQLLGLLSKFDSQDDPDVQTAL 200

Query: 282 ISFYAKCGSME-----------------DSLLV--------------FDKLTERNIVTWN 310
           +    +CG+M+                 +S+LV              F  + ER++V+WN
Sbjct: 201 VDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWN 260

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
            VI   +++GR  EA++    M   G+RP+  T    L AC     +E G     Q    
Sbjct: 261 MVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRN 320

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            P  + P   + MV+L ++ G FKEAK     L  D     W  L+GG
Sbjct: 321 LP-HIDPYVASAMVELYAKCGCFKEAKRVFSSLR-DRNSVSWTVLIGG 366



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 22/210 (10%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +V   N +++ YAK GS+ D++ +F ++  R++ +WN ++ GY Q+G+   A++ F  MR
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 334 INGIR-PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-------PEHYACMVD 385
             G   PN  T   ++ +C   G        + +  L+  G+L        P+    +VD
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALG--------WHEVALQLLGLLSKFDSQDDPDVQTALVD 202

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVS 444
           +L R G    A +    +  +P I    ++L G      V+     A  I    PE DV 
Sbjct: 203 MLVRCGAMDFASKQFSRIK-NPTIICRNSMLVGYAKSHGVD----HALEIFKSMPERDVV 257

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           S+ M+ +ALS +G+     ++  +M  KG+
Sbjct: 258 SWNMVISALSKSGRVREALDMVVDMHGKGV 287


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 256/460 (55%), Gaps = 6/460 (1%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL------NIRPSEF 109
           +      +VF+E+P  +VVS  ++I  +    ++ EA+ ++ + + L        +P   
Sbjct: 164 NDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLL 223

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T  S++ +   L DL  GK +H +    G + +    + ++++Y K  ++  +  VF   
Sbjct: 224 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 283

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              + VS+ +MI   ++  +  D+LK+F+ M  R++++WN +I     +      + +  
Sbjct: 284 KCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 343

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            M  EG+ P+ +T+   +   + +AA   GK  H C  K   + DV VGN LI  Y+KCG
Sbjct: 344 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 403

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           S+ +S  VF  +  +++VTW A+I      G G++A+  F  M   GI P+ V  + +++
Sbjct: 404 SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIF 463

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           AC+H+GLVE+G +YF + K +     + EHYAC+VDLLSRS    +A++F+  +P  P  
Sbjct: 464 ACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDS 523

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W ALL  C++  + E+ E  + RI+ L+P+D   YV++SN  +  GKWD V +IR+ +
Sbjct: 524 SIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSI 583

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           K +G+ + PGCSW+EI++KV+VF TG +     +E+  +L
Sbjct: 584 KARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLL 623



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 187/409 (45%), Gaps = 34/409 (8%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           P  NV    +II        + EA+ L+S    + ++P  +TF SVI +   L D  + K
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
            +H     +G  S++++G+A++D+Y + + +++A +VFE+    +VVS+ ++I G     
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
            + +AL+++                         +++ LF+EM+ +   P+  T+   + 
Sbjct: 196 YWNEALEIYY------------------------QSIKLFMEMVNQ-FKPDLLTITSILQ 230

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A  ++  L  GK  H   +    + D    N LI+ YAKCG++  S  VF  +  ++ V+
Sbjct: 231 ACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS 290

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           WN++I  Y QNG+  ++++ FE M+   I    +T   ++ +C H+     G    S+ +
Sbjct: 291 WNSMINVYIQNGKMGDSLKVFENMKARDI----ITWNTIIASCVHSEDCNLGLRMISRMR 346

Query: 369 LE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            E   P M        +  LL+   + KE    ++ L  +  +     L+   +++S   
Sbjct: 347 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLI---EMYSKCG 403

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
               + +    +  +DV ++  L +A  + G+         EM+  G+ 
Sbjct: 404 SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIV 452



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 125/272 (45%), Gaps = 18/272 (6%)

Query: 47  DSVSCGS------ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           DSVS  S      ++ K     +VF+ +   ++++  TII            + + SRM 
Sbjct: 287 DSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR 346

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
              + P   T  S++P  + L     GK++H    K+GL+S+V VG+ ++++Y K  S+ 
Sbjct: 347 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLR 406

Query: 161 EATRVFEDTHNPNVVSYTTMI--CGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGG 214
            + +VF+     +VV++T +I  CG+    +   A++ F EM    +    V++ A+I  
Sbjct: 407 NSFQVFKLMKTKDVVTWTALISACGMYGEGK--KAVRAFGEMEAAGIVPDHVAFVAIIFA 464

Query: 215 YSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
            S +G  EE +N F  M ++  + P      C +   +  A L   + F    +    K 
Sbjct: 465 CSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDF---ILSMPLKP 521

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
           D  +  +L+S     G  E +  V +++ E N
Sbjct: 522 DSSIWGALLSACRMSGDTEIAERVSERIIELN 553


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 258/456 (56%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF  + + + +S  ++I         E+A+ LF++M   ++   EF   +++   +  +
Sbjct: 334 RVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPD 393

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             + G+ LH +  K G+ S+  VG+AI+ +Y K    ++A  VF      N +S+T MI 
Sbjct: 394 YASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMIT 453

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
              +      A   F  MP RN+V+WN+M+  Y Q G +EE + L++ M   G+ P+  T
Sbjct: 454 AFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWIT 513

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              +I A A++A + +G      A KF   L+V V NS+++ Y++CG ++++   FD + 
Sbjct: 514 FTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSID 573

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ++++++WNA++  +AQNG G + I+ FE M     +PN ++ + +L  C+H GLV +G  
Sbjct: 574 DKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKH 633

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF             EH++CMVDLL R+G  ++AK+ +  +PF P    W ALLG C++H
Sbjct: 634 YFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVH 693

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            ++ L E AA++++ LD E    YV+LSN  S +G+ DNV+++R+ MK KG+    GCSW
Sbjct: 694 HDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSW 753

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           IE+ ++VHVF   + +H    E+Y  L    + I +
Sbjct: 754 IEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIED 789



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 165/321 (51%), Gaps = 15/321 (4%)

Query: 55  SDKFSSVHQVFDEVPDL--NVVSATTIIGRFAKQHHYEEAIYLFSRMLL------LNIRP 106
           S + S   ++FDE+P    + VS TT+I  +++   +  +   FS M+        N  P
Sbjct: 87  SSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDP 146

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
             F+F SV+ +  +L D  L  QLHA  +K+G      + ++++ +Y+K   ++ A  VF
Sbjct: 147 --FSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVF 204

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
            D   P++  + +MI G  +      AL++F  MP R+ VSWN +I  +SQ G   + + 
Sbjct: 205 FDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLA 264

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           +F+EM  +G  PN  T    + A A+ + L  G   HA  ++    LD+  GN LI  YA
Sbjct: 265 MFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYA 324

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCG ++ +  VF  L E + ++WN++I G    G GE+A+  F +MR + +  +   L  
Sbjct: 325 KCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPT 384

Query: 347 LLWACN-----HTGLVEKGYS 362
           +L  C+      TG +  GY+
Sbjct: 385 ILGVCSGPDYASTGELLHGYT 405



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 168/388 (43%), Gaps = 66/388 (17%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+F+ +P+ + VS  T+I  F++     + + +F  M      P+  T+GSV+ +  +  
Sbjct: 233 QIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTS 292

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL  G  LHA   ++    ++  G+ ++D+Y K   ++ A RVF                
Sbjct: 293 DLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVF---------------- 336

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                       K  +E  H   +SWN++I G    G  E+A+ LF +M R  +V +   
Sbjct: 337 ------------KSLREHDH---ISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFI 381

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV----- 297
           LP  +   +       G+  H   +K        VGN++I+ YAKCG  + + LV     
Sbjct: 382 LPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMP 441

Query: 298 --------------------------FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
                                     FD + ERNIVTWN+++  Y QNG  EE ++ +  
Sbjct: 442 LRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVS 501

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRS 390
           MR NG++P+ +T    + AC    +V+ G    + A     G+ L       +V + SR 
Sbjct: 502 MRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHAT--KFGLSLNVSVANSIVTMYSRC 559

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           G  KEAK   +D   D  +  W A+L  
Sbjct: 560 GLIKEAKN-TFDSIDDKDLISWNAMLAA 586



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 152/337 (45%), Gaps = 51/337 (15%)

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           ++ ++LHA     GL S++F+ + +L +Y       +A +VF++TH+ N+ ++ TMI  L
Sbjct: 25  HIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRAL 84

Query: 185 LKRERFEDALKLFQEMPHR--NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE----GLVP 238
           +   R  DA KLF EMP R  + VSW  MI GYSQ G +  +   F  M+R+    G   
Sbjct: 85  VSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNY 144

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME------ 292
           +  +    + A  ++    +    HA   K    ++  + NS++  Y KCG ++      
Sbjct: 145 DPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVF 204

Query: 293 -------------------------DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
                                     +L +F+++ ER+ V+WN +I  ++Q+G G + + 
Sbjct: 205 FDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLA 264

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV--- 384
            F  M   G  PN +T   +L AC  T  ++ G    ++       +L+ EH   +V   
Sbjct: 265 MFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHAR-------ILRMEHSLDLVFGN 317

Query: 385 ---DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              D+ ++ G    AK     L     I  W +L+ G
Sbjct: 318 GLIDMYAKCGCLDLAKRVFKSLREHDHIS-WNSLITG 353



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 31/226 (13%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  ++  S S         FD +P+ N+V+  +++  + +    EE + L+  M    ++
Sbjct: 449 TAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQ 508

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P   TF + I +   L  + LG Q+   ATK GL  NV V ++I+ +Y +   I+EA   
Sbjct: 509 PDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNT 568

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+   + +++                               SWNAM+  ++Q G   + +
Sbjct: 569 FDSIDDKDLI-------------------------------SWNAMLAAFAQNGLGIKVI 597

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
           + F +ML+    PNH +    +   +++  +  GK +     +  G
Sbjct: 598 DTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFG 643


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 164/454 (36%), Positives = 248/454 (54%), Gaps = 11/454 (2%)

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           D   +  T+ I   + + H   A+ L S ML   + P+  T  + +P   A   L+ G+ 
Sbjct: 351 DPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLP---ACRGLSPGRA 407

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSYTTMICGLLKRE 188
           LH +A K+ L  + +V +A+L +Y +      A  +F+D   +P+VVS T M+       
Sbjct: 408 LHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMG 467

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
             +DA  LF  +P ++ V WNAMI GY+Q GR  EA+ LF  ML  G+ P+  T+   + 
Sbjct: 468 ALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLS 527

Query: 249 AAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
           A A +  +  GK  H+        +L V VG +LI  Y KCGS+ D++ VF  + +++IV
Sbjct: 528 AVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIV 587

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
            WNA+I GYA +G   +A+E F + R  G+ P  +T +GLL AC+H+G+VE+G  +F   
Sbjct: 588 VWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSM 647

Query: 368 KLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
           + E   DP   K EHY CMVDLL R+G  KEA   +  +   P    W +LL  C++H N
Sbjct: 648 EREYGIDP---KIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKN 704

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           + LG+  A  ++A    +   Y++LSN  +  G W  V+ +R  MK  G+ + PGCS IE
Sbjct: 705 MSLGQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIE 764

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           I  +V+ FV GD +H   DEIY +L      ++E
Sbjct: 765 IDREVYEFVAGDMSHPRTDEIYVMLDKMNGLVKE 798



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 132/303 (43%), Gaps = 39/303 (12%)

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
           R + +L L +       + + + I  +S  G    A+ L  +ML +GL+P   TL  ++ 
Sbjct: 338 RLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLP 397

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC-------------------- 288
           A   ++    G++ H  A K     D +V  +L+  YA+                     
Sbjct: 398 ACRGLSP---GRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVV 454

Query: 289 ------------GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
                       G+++D+  +FD L  ++ V WNA+I GY Q+GR  EA+  F RM  +G
Sbjct: 455 SVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSG 514

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           + P+ VT++ +L A    G VE G    S  K      L       ++D+  + G   +A
Sbjct: 515 VEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDA 574

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALS 454
            +  + +  D  I  W A++ G  +H  S   L  F   R   L P D+ +++ L NA S
Sbjct: 575 VDVFHGIG-DKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDI-TFIGLLNACS 632

Query: 455 VAG 457
            +G
Sbjct: 633 HSG 635



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 32/218 (14%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  ++C ++         +FD +P  + V    +I  + +     EA+ LF RML   + 
Sbjct: 457 TAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVE 516

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKV-GLQSNVFVGSAILDLYIKLSSIEEATR 164
           P E T   V+ +   L  +  GK LH++      +Q +V VG+A++D+Y K  S+ +A  
Sbjct: 517 PDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVD 576

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           VF    + ++V                                WNAMI GY+  G + +A
Sbjct: 577 VFHGIGDKDIV-------------------------------VWNAMINGYAMHGDSRKA 605

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           + +F++   +GL P   T    + A ++   +  G+ F
Sbjct: 606 LEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREF 643


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 178/486 (36%), Positives = 269/486 (55%), Gaps = 43/486 (8%)

Query: 43  AIRTDSVSCGSESDKFS------SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLF 96
            +R D+++     + +S      S  ++FDE+P  ++VS  T++G   +    E+A+ LF
Sbjct: 77  GLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLF 136

Query: 97  SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL 156
            +M       SEFT  SV+ +  A   +   KQLH +A K  L SNVFVG+A+LD+Y K 
Sbjct: 137 MQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAK- 195

Query: 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216
                                    CGL+K     DA  +F+ MP R+ V+W++M+ GY 
Sbjct: 196 -------------------------CGLVK-----DANLVFECMPERSDVTWSSMVAGYV 225

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
           Q    EEA+ LF      GL  N  T+  A+ A A  AAL  GK   A + K     ++F
Sbjct: 226 QNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIF 285

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           V +SLI  YAKCG +E++  VF  + E+N+V WNA++ G++++ R  EA+ +FE+M+  G
Sbjct: 286 VISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMG 345

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRF 393
           I PN +T + +L AC+H GLVEKG  YF    +     P +L   HY+CMVD+L R+G  
Sbjct: 346 ICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVL---HYSCMVDILGRAGLL 402

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
            EAK+F+  +PFD     W +LL  C+I+ N+EL E AA+ +  ++P +  ++V+LSN  
Sbjct: 403 HEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIY 462

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           +   +W+ V+  R  +KE    +  G SWIEIK KVH F+ G+RNH    EIY  L    
Sbjct: 463 AANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLV 522

Query: 514 EQIREF 519
            ++++ 
Sbjct: 523 GEMKKI 528



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 31/218 (14%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G   HA   +VGL+++    + ++++Y K   +E A ++F++    ++VS+ T       
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNT------- 118

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                                   M+G ++Q G  E+A+ LF++M +EG   +  T+   
Sbjct: 119 ------------------------MVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSV 154

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A A    +   K  H  A+K     +VFVG +L+  YAKCG ++D+ LVF+ + ER+ 
Sbjct: 155 VCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD 214

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           VTW++++ GY QN   EEA+  F R +  G+  N  T+
Sbjct: 215 VTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTI 252



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           +A N AA+  G + HA  ++   + D    N L++ Y+KCG +E +  +FD++  R++V+
Sbjct: 57  SARNRAAIE-GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVS 115

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           WN ++  + QNG  E+A+  F +M+  G   +  T+  ++ AC
Sbjct: 116 WNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCAC 158


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 151/454 (33%), Positives = 250/454 (55%), Gaps = 31/454 (6%)

Query: 58   FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
                + +FD +   + VS + ++G FAK   Y      F  ++    RP  +T   VI +
Sbjct: 786  LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRA 845

Query: 118  STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
               L++L +G+ +H    K GL  + FV +A++D+Y K   IE+A               
Sbjct: 846  CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDA--------------- 890

Query: 178  TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                       RF     LF +M  R++V+W  MIGGY++ G   E++ LF +M  EG+V
Sbjct: 891  -----------RF-----LFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVV 934

Query: 238  PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            P+   +   + A A + A+   ++      +   +LDV +G ++I  +AKCG +E +  +
Sbjct: 935  PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREI 994

Query: 298  FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            FD++ E+N+++W+A+I  Y  +G+G +A++ F  M  +GI PN +TL+ LL+AC+H GLV
Sbjct: 995  FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLV 1054

Query: 358  EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            E+G  +FS    +       +HY C+VDLL R+GR  EA + +  +  +   G W A LG
Sbjct: 1055 EEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLG 1114

Query: 418  GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
             C+ H +V L E AA  +L L P++   Y++LSN  + AG+W++V+ IR  M ++ + ++
Sbjct: 1115 ACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKI 1174

Query: 478  PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRS 511
            PG +WIE+ +K H F  GD  H  + EIY +L+S
Sbjct: 1175 PGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKS 1208



 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 251/459 (54%), Gaps = 31/459 (6%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
               + +FD +   + VS + ++G FAK   Y      F  ++    RP  +T   VI +
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 169

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L++L +G+ +H    K GL  + FV +A++D+Y+K   IE+A               
Sbjct: 170 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDA--------------- 214

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                      RF     LF +M  R++V+W  MIGGY++ G+  E++ LF +M  EG+V
Sbjct: 215 -----------RF-----LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 258

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+   +   + A A + A+   +       +   +LDV +G ++I  YAKCG +E +  +
Sbjct: 259 PDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 318

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD++ E+N+++W+A+I  Y  +G+G +A++ F  M  +G+ P+ +TL  LL+AC+H GLV
Sbjct: 319 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLV 378

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           E+G  +FS    +       +HY C+VDLL R+GR  EA + +  +  +   G W A LG
Sbjct: 379 EEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLG 438

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C+ H +V L E AA  +L L  ++   YV+LSN  + AG+W++V+ IR  M ++ + + 
Sbjct: 439 ACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKT 498

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           PG +WIE+ +K H F  GD  H  + EIY +L+S + ++
Sbjct: 499 PGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKL 537



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 147/287 (51%), Gaps = 16/287 (5%)

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N+V    +I         +DA  LF  M  R+ VSW+ M+GG+++ G        F E++
Sbjct: 93  NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI 152

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R G  P++ TLP  I A  ++  L MG+  H    KF   LD FV  +L+  Y KC  +E
Sbjct: 153 RCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIE 212

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+  +FDK+ ER++VTW  +I GYA+ G+  E++  FE+MR  G+ P+ V ++ +++AC 
Sbjct: 213 DARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACA 272

Query: 353 HTGLVEKGY---SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
             G + K      Y  + K +   +L       M+D+ ++ G  + A+E ++D   +  +
Sbjct: 273 KLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMYAKCGCVESARE-IFDRMEEKNV 327

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
             W A++     H          R+ L L P  +SS  ML + +++A
Sbjct: 328 ISWSAMIAAYGYHGQ-------GRKALDLFPMMLSS-GMLPDKITLA 366



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 123/275 (44%), Gaps = 39/275 (14%)

Query: 47   DSVSCGSESDKFSSVHQV------FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
            D   C +  D +    ++      FD++ + ++V+ T +IG +A+  +  E++ LF +M 
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR 929

Query: 101  LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
               + P +    +V+ +   L  ++  + +  +  +   Q +V +G+A++D++ K   +E
Sbjct: 930  EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 989

Query: 161  EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
             A  +F+     NV+S                               W+AMI  Y   G+
Sbjct: 990  SAREIFDRMEEKNVIS-------------------------------WSAMIAAYGYHGQ 1018

Query: 221  NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK-FLGKLDVFVGN 279
              +A++LF  MLR G++PN  TL   + A ++   +  G  F +   + +  + DV    
Sbjct: 1019 GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYT 1078

Query: 280  SLISFYAKCGSMEDSLLVFDKLT-ERNIVTWNAVI 313
             ++    + G ++++L +   +T E++   W A +
Sbjct: 1079 CVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFL 1113



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 6/147 (4%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           ++ V N L+ FY+   +++D+  +FD +  R+ V+W+ ++ G+A+ G        F  + 
Sbjct: 769 NLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELI 828

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSG 391
             G RP+  TL  ++ AC     ++ G        +   G L  +H+ C  +VD+  +  
Sbjct: 829 RCGARPDNYTLPFVIRACRDLKNLQMG--RLIHHIVYKFG-LDLDHFVCAALVDMYGKCR 885

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGG 418
             ++A+ FL+D   +  +  W  ++GG
Sbjct: 886 EIEDAR-FLFDKMXERDLVTWTVMIGG 911


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 252/448 (56%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H +F      ++    TII   +      EAI L++R+L  ++R   ++   V+ +   L
Sbjct: 93  HSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRL 152

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +++G+Q+H  A   GL S++ V +A++ +Y     + EA ++F+     +V  +  M+
Sbjct: 153 LAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMV 212

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G  K    ++A  LF+ MP RNV+SW A+I GY+Q  R  EA+ +F  M  E + P+  
Sbjct: 213 AGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEI 272

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
            +  A+ A A++ AL +G+  H    K      V + N+LI  YAKCG +E +L VF  +
Sbjct: 273 AMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM 332

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             ++++TW ++I G A +G G EA+E F  M  N I+PN +T + +L AC H GLVE G 
Sbjct: 333 EHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGR 392

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            YF     +     K +HY CM+DLL R+G  +EA+E +  +PF+     W +LL   +I
Sbjct: 393 WYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARI 452

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + ELG+ A + ++ ++P +  +Y +LSN  +   KW+    +R+ M++ G+ ++PG S
Sbjct: 453 HGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGS 512

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            IE+ ++VH FV GD+ H  ++ I+ VL
Sbjct: 513 CIEVNNRVHEFVAGDKLHPQSERIFEVL 540


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 273/494 (55%), Gaps = 37/494 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F S  +VFD V   NV     +I    + +   +AI L+  M++ + RP+++T+ +V+ +
Sbjct: 87  FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKA 146

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP-NVVS 176
            +    +  G Q+HA   K GL  +  + S+ + +Y     + EA R+ +D     + V 
Sbjct: 147 CSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVC 206

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVS-WNAMIGGYSQTG--------------RN 221
           +  MI G L+    E A +LF+ MP R+++S WNAMI G+S+ G              R+
Sbjct: 207 WNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERD 266

Query: 222 E-----------------EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
           E                 EA+ +F +M +E + P    LP  + A AN+ AL  G+  H 
Sbjct: 267 EISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHT 326

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
            A +   +LD  +G SL+  YAKCG ++ +  VF+K++ + + +WNA+I G A +GR E+
Sbjct: 327 YAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAED 386

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384
           AI+ F +M IN   PN +T +G+L AC H GLV+KG + F+  + E     + EHY C+V
Sbjct: 387 AIDLFSKMDIN---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIV 443

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444
           DLL R+G   EA++ +  +P +P    W ALLG C+ H NVELGE   + +L L+P++  
Sbjct: 444 DLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSG 503

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI-KSKVHVFVTGDRNHHMND 503
            Y +LSN  + AG+W+ V  +R+ MKE+G+   PG S I++ + +VH F+ GD +H    
Sbjct: 504 RYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVK 563

Query: 504 EIYAVLRSCTEQIR 517
           +IY +L    E+++
Sbjct: 564 DIYQMLDKVKERLQ 577



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 154/350 (44%), Gaps = 49/350 (14%)

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS-----SIEEATRVFEDTHNP 172
           +T+L  L   KQ HA   + G   + ++  +++  Y  +S     S E + RVF+    P
Sbjct: 44  TTSLHHL---KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKP 100

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           NV  +  MI   ++      A+ L+ EM       N  ++ A++   S  G   E V + 
Sbjct: 101 NVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVH 160

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF-------------------------- 262
             +++ GL  +   L  AI   A+   L   +                            
Sbjct: 161 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV 220

Query: 263 HACAVKFLGKLD---VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
            A    F G  D   +   N++IS +++CG +E +   FD++ ER+ ++W+A+I GY Q 
Sbjct: 221 EAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQE 280

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLK 376
           G   EA+E F +M+   IRP    L  +L AC + G +++G   ++Y  +  ++  G+L 
Sbjct: 281 GCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG 340

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
                 +VD+ ++ GR   A E    +  +  +  W A++GG  +H   E
Sbjct: 341 ----TSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAE 385



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 14/221 (6%)

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCG-----SMEDSLLVFDKLTERNIVTWNAVIC 314
           K  HA  ++     D ++  SL+  YA        S E SL VFD + + N+  WN +I 
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
              +N    +AI  +  M +   RPN  T   +L AC+  G+V +G      A L   G+
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQV--HAHLVKHGL 168

Query: 375 LKPEH-YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
               H  +  + + +  GR  EA+  L D   +     W A++ G      VE    AAR
Sbjct: 169 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE----AAR 224

Query: 434 RILALDPED--VSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +    P+   +S++  + +  S  G  +       EMKE+
Sbjct: 225 ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKER 265


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 179/545 (32%), Positives = 277/545 (50%), Gaps = 85/545 (15%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           S+ CG          QVFD + + ++V+  ++I    K    +EA+ ++  M+  N+ P 
Sbjct: 109 SLKCGD----IDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPD 164

Query: 108 EFTFGSVIPSSTALEDLNLGKQL---HAWATKVGLQ-SNVFVGSAILDLYIKLSSIEEAT 163
           E+T  SV     A  DL+L K+    H  A  +GL+ SNVFVGSA++D+Y+K     EA 
Sbjct: 165 EYTLSSVFK---AFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAK 221

Query: 164 RVF----------------------EDTH-------------NPNVVSYTT--------- 179
            V                       EDT               PN  +Y +         
Sbjct: 222 LVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLK 281

Query: 180 ------MICGLLKRERFE--------------------DALKLFQEMPHRNVVSWNAMIG 213
                 +I GL+ +  FE                    D+L++F+ + + N VSW ++I 
Sbjct: 282 DIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLIS 341

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           G  Q GR E A+  F +M+R+ + PN  TL  A+   +N+A    G+  H    K+    
Sbjct: 342 GLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDR 401

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           D + G+ LI  Y KCG  + + LVFD L+E ++++ N +I  YAQNG G EA++ FERM 
Sbjct: 402 DKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMI 461

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
             G++PN VT+L +L ACN++ LVE+G   F   + +D  ML  +HYACMVDLL R+GR 
Sbjct: 462 NLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFR-KDKIMLTNDHYACMVDLLGRAGRL 520

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
           +EA E L     +P +  W+ LL  C++H  VE+ E   R+IL ++P D  + +++SN  
Sbjct: 521 EEA-EMLTTEVINPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLY 579

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           +  GKW+ V  ++ +MK+  + + P  SW+EI  + H F+ GD   H N E   +L +  
Sbjct: 580 ASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSE--QILENLE 637

Query: 514 EQIRE 518
           E I++
Sbjct: 638 ELIKK 642



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 101/183 (55%), Gaps = 1/183 (0%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P  +S + ++   LK    + A ++F  M  R++V+WN++I    +  R++EAV ++  M
Sbjct: 97  PAEISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLM 156

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGS 290
           +   ++P+  TL     A ++++     +  H  AV   L   +VFVG++L+  Y K G 
Sbjct: 157 ITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGK 216

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
             ++ LV D++ E+++V   A+I GY+Q G   EA++ F+ M +  ++PN  T   +L +
Sbjct: 217 TREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLIS 276

Query: 351 CNH 353
           C +
Sbjct: 277 CGN 279



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 64/123 (52%)

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           G+ L+    KCG ++ +  VFD ++ER+IVTWN++I    ++ R +EA+E +  M  N +
Sbjct: 102 GSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNV 161

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            P+  TL  +  A +   L ++       A +    +      + +VD+  + G+ +EAK
Sbjct: 162 LPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAK 221

Query: 398 EFL 400
             L
Sbjct: 222 LVL 224


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 154/470 (32%), Positives = 249/470 (52%), Gaps = 37/470 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++ +  +    VFD + + + +S   +I  ++K     EA+ +F RM   ++RPS  TF 
Sbjct: 368 AKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFV 427

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++  S++   + L KQ+H    K G   +++  SA++D+Y K S + +A  VF   H  
Sbjct: 428 SLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLH-- 485

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                        ++++V WN+MI G++Q  + EEA+ LF ++L
Sbjct: 486 -----------------------------YKDMVIWNSMIFGHAQNEQGEEAIKLFNQLL 516

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G+ PN  T    +  A+ +A++  G+ FHA  +K     D  V N+LI  YAKCG ++
Sbjct: 517 LSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIK 576

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           +  ++F+     +++ WN++I  YAQ+G  EEA++ F  M    + PN VT +G+L AC 
Sbjct: 577 EGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACA 636

Query: 353 HTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H G V +G ++F+  K     +PG+   EHYA +V+L  RSG+   AKEF+  +P  P  
Sbjct: 637 HAGFVGEGLNHFNSMKSNYDIEPGI---EHYASVVNLFGRSGKLHAAKEFIERMPIKPAA 693

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W++LL  C +  N E+G +AA   L  DP D   YV+LSN  +  G W +V N+R++M
Sbjct: 694 AVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQM 753

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
              G  +  GCSWIE+  +VH F+   R H   + IY+VL   T  I+  
Sbjct: 754 DSSGTVKETGCSWIEVTKEVHTFIVRGREHPEAELIYSVLDELTSLIKNL 803



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 179/392 (45%), Gaps = 46/392 (11%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTFGSVI 115
           +      +FD +P  N+VS  ++I  + +    + AI LF      +   P+EF   SV+
Sbjct: 68  RLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVL 127

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            + T  + ++LG+Q+H  A K+ L +NV+VG+A+++LY KL  ++EA  V          
Sbjct: 128 RACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLV---------- 177

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                                F  +P R  V+WN +I GY+Q G    A+ LF  M  EG
Sbjct: 178 ---------------------FHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEG 216

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+   L  A+ A + +  L  G+  H  A +   + D  V N LI  Y KC  +  + 
Sbjct: 217 VRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAAR 276

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +FD +  RN+V+W  +I GY QN    EAI  F  M   G +P+G     +L +C    
Sbjct: 277 KLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLA 336

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
            + +G   +++  +A LE    +K      ++D+ ++     EA+     L  D  I + 
Sbjct: 337 AIWQGRQIHAHVIKADLEADEYVKN----ALIDMYAKCEHLTEARAVFDALAEDDAISY- 391

Query: 413 KALLGGCQIHSNVELGE----FAARRILALDP 440
            A++ G     N +L E    F   R  +L P
Sbjct: 392 NAMIEG--YSKNRDLAEAVNIFQRMRFFSLRP 421



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 15/279 (5%)

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAI 247
           R  DA  LF  MPHRN+VSW ++I  Y+Q GR++ A++LF+   +    VPN   L   +
Sbjct: 68  RLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVL 127

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A     A+ +G+  H  AVK     +V+VG +LI+ YAK G M++++LVF  L  R  V
Sbjct: 128 RACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPV 187

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE-----KGYS 362
           TWN VI GYAQ G G  A+E F+RM I G+RP+   L   + AC+  G +E      GY+
Sbjct: 188 TWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYA 247

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           Y S A   D  ++       ++DL  +  R   A++ L+D      +  W  ++ G   +
Sbjct: 248 YRS-ATETDTSVIN-----VLIDLYCKCSRLSAARK-LFDCMEYRNLVSWTTMISGYMQN 300

Query: 423 S-NVE-LGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           S N E +  F         P+  +   +L++  S+A  W
Sbjct: 301 SFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIW 339



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 142/285 (49%), Gaps = 31/285 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF  +P    V+  T+I  +A+      A+ LF RM +  +RP  F   S + + +AL  
Sbjct: 177 VFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGF 236

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G+Q+H +A +   +++  V + ++DLY K S +  A ++F+     N+VS+TTMI  
Sbjct: 237 LEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMI-- 294

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                         GY Q   N EA+ +F  M + G  P+    
Sbjct: 295 -----------------------------SGYMQNSFNAEAITMFWNMTQAGWQPDGFAC 325

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + +  ++AA+  G+  HA  +K   + D +V N+LI  YAKC  + ++  VFD L E
Sbjct: 326 TSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAE 385

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            + +++NA+I GY++N    EA+  F+RMR   +RP+ +T + LL
Sbjct: 386 DDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLL 430



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 176/371 (47%), Gaps = 35/371 (9%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + S+  ++FD +   N+VS TT+I  + +     EAI +F  M     +P  F   S++ 
Sbjct: 271 RLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILN 330

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           S  +L  +  G+Q+HA   K  L+++ +V +A++D+Y K   + EA  VF+     + +S
Sbjct: 331 SCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAIS 390

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           Y  MI G  K     +A+ +FQ M                           F       L
Sbjct: 391 YNAMIEGYSKNRDLAEAVNIFQRM-------------------------RFF------SL 419

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            P+  T    +  +++  A+ + K  H   +K    LD++  ++LI  Y+KC  + D+  
Sbjct: 420 RPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKT 479

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VF+ L  +++V WN++I G+AQN +GEEAI+ F ++ ++G+ PN  T + L+   +    
Sbjct: 480 VFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLAS 539

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           +  G  +   A +   G+    H +  ++D+ ++ G  KE +  L++      +  W ++
Sbjct: 540 MFHGQQF--HAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGR-MLFESTCGEDVICWNSM 596

Query: 416 LGGCQIHSNVE 426
           +     H + E
Sbjct: 597 ITTYAQHGHAE 607



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 7/155 (4%)

Query: 271 GKLD-VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
           G+LD +F+ N L+  Y+  G + D+  +FD++  RN+V+W +VI  Y Q+GR + AI  F
Sbjct: 48  GRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLF 107

Query: 330 ERMRINGIR-PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDL 386
              +      PN   L  +L AC  +  V  G      A   D   L    Y    +++L
Sbjct: 108 VAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLD---LDANVYVGTALINL 164

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            ++ G   EA    + LP    + +   + G  QI
Sbjct: 165 YAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQI 199


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 156/459 (33%), Positives = 262/459 (57%), Gaps = 8/459 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F++V   N      +I  +  +   +E+   +S M    + P  FTF ++  +  A  D
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161

Query: 124 LNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           + LG+Q+H     VG    ++ VG++++D+YIK   +E   +VF++  N +V+S+T +I 
Sbjct: 162 VGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELIS 221

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
             +K    E A +LF  +P +++V+W  M+ G++Q  +  EA+  F +M   G+  +  T
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 243 LPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           L   I A A + A          A K  F GK  V VG++LI  Y+KCGS+ D+  VF  
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQG 341

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN+ +++++I G+A +GR  +A++ F+ M    I+PN VT +G+L AC+H G+VE+G
Sbjct: 342 MKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQG 401

Query: 361 YSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +  F    +E    +KP  +HY CMVDLL R+GR +EA E +  +P +P  G W ALLG 
Sbjct: 402 WQIFEL--MEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGA 459

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+IH + ++   AA  +  L+P  + +Y++L+N  +  G+W++VS +R+ M+ +G+ + P
Sbjct: 460 CRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNP 519

Query: 479 GCSWIEI-KSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
             SWIE  K  VH F +GD  H  + EI   L    +++
Sbjct: 520 AFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRL 558



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 32/194 (16%)

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
           L +F ++ + N   +NA+I GY    R +E+   +  M +EG+VP   T      A    
Sbjct: 100 LSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAK 159

Query: 254 AALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
             +G+G+  H   +   G   D+ VGNS+I  Y KCG +E    VFD++  R++++W  +
Sbjct: 160 MDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTEL 219

Query: 313 I-------------------------------CGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I                                G+AQN +  EAI FFE+M+  G+  + 
Sbjct: 220 ISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDE 279

Query: 342 VTLLGLLWACNHTG 355
           +TL+G++ AC   G
Sbjct: 280 ITLIGVISACAQLG 293



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 13/212 (6%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T+ +S   +S    S  ++FD +P  ++V+ T ++  FA+     EAI  F +M    + 
Sbjct: 217 TELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVE 276

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATK--VGLQSNVFVGSAILDLYIKLSSIEEAT 163
             E T   VI +   L        +   A K   G + +V VGSA++D+Y K  S+ +A 
Sbjct: 277 TDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAY 336

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM------PHRNVVSWNAMIGGYSQ 217
           RVF+     NV SY++MI G     R  DA+KLF EM      P+R  V++  ++   S 
Sbjct: 337 RVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNR--VTFIGVLTACSH 394

Query: 218 TGRNEEAVNLFIEMLRE--GLVPNHSTLPCAI 247
            G  E+   +F E++ +  G+ P+     C +
Sbjct: 395 AGMVEQGWQIF-ELMEKCYGIKPSADHYTCMV 425



 Score = 40.0 bits (92), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%)

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           L +F+++   N   +NA+I GY    R +E+ EF+  MR  G+ P   T   L  AC   
Sbjct: 100 LSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAK 159

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLP 404
             V  G     Q  L   G  +  H    M+D+  + G  +  ++   ++P
Sbjct: 160 MDVGLGRQIHGQTILVG-GFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMP 209


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 252/448 (56%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H +F      ++    TII   +      EAI L++R+L  ++R   ++   V+ +   L
Sbjct: 93  HSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRL 152

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +++G+Q+H  A   GL S++ V +A++ +Y     + EA ++F+     +V  +  M+
Sbjct: 153 LAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMV 212

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G  K    ++A  LF+ MP RNV+SW A+I GY+Q  R  EA+ +F  M  E + P+  
Sbjct: 213 AGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEI 272

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
            +  A+ A A++ AL +G+  H    K      V + N+LI  YAKCG +E +L VF  +
Sbjct: 273 AMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNM 332

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             ++++TW ++I G A +G G EA+E F  M  N I+PN +T + +L AC H GLVE G 
Sbjct: 333 EHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGR 392

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            YF     +     K +HY CM+DLL R+G  +EA+E +  +PF+     W +LL   +I
Sbjct: 393 WYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARI 452

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + ELG+ A + ++ ++P +  +Y +LSN  +   KW+    +R+ M++ G+ ++PG S
Sbjct: 453 HGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGS 512

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            IE+ ++VH FV GD+ H  ++ I+ VL
Sbjct: 513 CIEVNNRVHEFVAGDKLHPQSERIFEVL 540


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 158/462 (34%), Positives = 264/462 (57%), Gaps = 5/462 (1%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVI 115
           K     +VFDE+P+ +VVS   +I  +     +E+AI +F RM    N++  E T  S +
Sbjct: 164 KMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTL 223

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
            + + L +  +G+++H +     L+    +G+A+LD+Y K   +++A  +F++  N NV+
Sbjct: 224 SACSVLRNQEVGEEIHRY-VDAELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVI 282

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
            +T+M+ G       ++A +LF+  P R++V W AMI GY Q    +EA+ LF +M  + 
Sbjct: 283 CWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQR 342

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L P++  L   +   A   AL  GK  H    +    LD  VG +L+  YAKCG +E +L
Sbjct: 343 LRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKAL 402

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VF ++ ER+  +W +VI G A NG   +A++FF +M   G RP+ +T +G+L ACNH G
Sbjct: 403 EVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVLTACNHGG 462

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF---DPGIGFW 412
           LVE+G  YF           K EHY+C++DLL R+G   EA+  L  +P    D  +  +
Sbjct: 463 LVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEMIPIESSDIVVPLY 522

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LL  C+ + N+++ E   RR+  ++ +D S + +L++  + A +W++V+ +RR+MKE 
Sbjct: 523 CSLLSACRNYGNLKMSERVGRRLERVEVKDSSVHTLLASVYASANRWEDVTTVRRKMKEL 582

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTE 514
           G+ + PGCS IE+   +H F+ G  +H   D+I++VL   T+
Sbjct: 583 GIRKFPGCSSIEVNGVLHEFMVGGPSHMEMDDIHSVLGQVTK 624



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 173/399 (43%), Gaps = 68/399 (17%)

Query: 79  IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138
           +I   AK  ++ + + LFS +    + P  FT   V  +   L  +  G+++H +  K G
Sbjct: 87  MIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSG 146

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
              +  V ++++ +Y  L  +E A +VF++    +VVS+  +I   +   +FEDA+ +F+
Sbjct: 147 F--DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFR 204

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
            M                   R E             L  + +T+   + A + +    +
Sbjct: 205 RM-------------------RRE-----------SNLKADEATVVSTLSACSVLRNQEV 234

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G+  H      L ++   +GN+L+  Y KCG ++ +  +FD++  +N++ W +++ GYA 
Sbjct: 235 GEEIHRYVDAEL-EMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYAS 293

Query: 319 NGRGEEAIEFFER-------------------------------MRINGIRPNGVTLLGL 347
           NG  +EA E FER                               M+I  +RP+   L+ L
Sbjct: 294 NGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTL 353

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           L  C  TG +E+G  +      E+   L       +VD+ ++ G  ++A E  Y++  + 
Sbjct: 354 LKGCAQTGALEQG-KWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMK-ER 411

Query: 408 GIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVS 444
               W +++ G  ++  ++  L  F+        P+D++
Sbjct: 412 DTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDIT 450



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 150/348 (43%), Gaps = 48/348 (13%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLS--SIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           Q+HA   +VGLQ N+   + I+      S  SI  A RV     +P +V Y  MI  + K
Sbjct: 34  QIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGFVQSPCLVMYNLMIKAVAK 93

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
            E F   L LF                                E+ ++GL P++ TLP  
Sbjct: 94  DENFRKVLVLFS-------------------------------ELRKQGLNPDNFTLPPV 122

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
             A   +  +  G+  H   VK     D  V NS++  Y   G ME +  VFD++ ER++
Sbjct: 123 FKAMGCLGKVVEGEKVHGYVVK--SGFDACVCNSVMGMYGALGKMEVAKKVFDEIPERDV 180

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSY-- 363
           V+WN +I  Y  + + E+AI  F RMR  + ++ +  T++  L AC+     E G     
Sbjct: 181 VSWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHR 240

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           +  A+LE    +  +    ++D+  + G   +A+  ++D   +  +  W +++ G    S
Sbjct: 241 YVDAELE----MTTKIGNALLDMYCKCGCVDKARA-IFDEMGNKNVICWTSMVSG--YAS 293

Query: 424 NVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
           N  L E  AR +    P  D+  +  + N       +D    + R+M+
Sbjct: 294 NGSLDE--ARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQ 339



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 76/155 (49%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  + +       ++F+  P  ++V  T +I  + + + ++EA+ LF +M +  +R
Sbjct: 285 TSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFRKMQIQRLR 344

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P  F   +++        L  GK LH +  +  +  +  VG+A++D+Y K   +E+A  V
Sbjct: 345 PDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKCGCVEKALEV 404

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           F +    +  S+T++I GL        AL  F +M
Sbjct: 405 FYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQM 439


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 250/454 (55%), Gaps = 33/454 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D    + ++FDE+P+ + VS   II  +A        + LF  M  L        + 
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  + +L D+++GKQ+HA    +GL S   +G+A++D+Y K                 
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK----------------- 384

Query: 173 NVVSYTTMICGLLKRERFEDALKL-FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                    CG+L      DA K  F     ++ +SW A+I GY Q G++EEA+ LF +M
Sbjct: 385 ---------CGML------DAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM 429

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            R GL P+ +T    I A++++A +G+G+  H+  ++   K  VF G+ L+  YAKCG +
Sbjct: 430 RRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCL 489

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +++L  FD++ ERN ++WNAVI  YA  G  + AI+ FE M   G  P+ VT L +L AC
Sbjct: 490 DEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GL ++   YF   K +       EHYAC++D L R G F + ++ L ++PF      
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPII 609

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ++L  C+IH N EL   AA ++  ++P D + YV+LSN  + AG+W++ + +++ M++
Sbjct: 610 WTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRD 669

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           +G+ +  G SW+EIK K++ F + D    M DEI
Sbjct: 670 RGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEI 703



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 172/376 (45%), Gaps = 63/376 (16%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            ++  +VF E+ D + V+   ++   +K+  + +A+ LF+ M    I  + FTF S++  
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTV 245

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           +  +  L LG Q+HA   +     NVFV +++LD Y K                      
Sbjct: 246 AAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSK---------------------- 283

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               C  L     +D  +LF EMP R+ VS+N +I  Y+        + LF EM + G  
Sbjct: 284 ----CDCL-----DDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF- 333

Query: 238 PNHSTLPCAII--AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
            +   LP A +   A ++  + +GK  HA  V      +  +GN+LI  Y+KCG ++ + 
Sbjct: 334 -DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAK 392

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN--- 352
             F   +E++ ++W A+I GY QNG+ EEA++ F  MR  G+RP+  T   ++ A +   
Sbjct: 393 SNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLA 452

Query: 353 --------HTGLVEKGY--SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
                   H+ L+  GY  S FS + L              VD+ ++ G   EA     +
Sbjct: 453 MIGLGRQLHSYLIRSGYKSSVFSGSVL--------------VDMYAKCGCLDEALRTFDE 498

Query: 403 LPFDPGIGFWKALLGG 418
           +P    I  W A++  
Sbjct: 499 MPERNSIS-WNAVISA 513



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 177/416 (42%), Gaps = 48/416 (11%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S S    +   +F   P  N  + T ++   A      +A+ LF  ML   + P  
Sbjct: 81  LSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDR 140

Query: 109 FTFGSVI--PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
            T  +V+  P  T          LH +A K GL ++VFV + +LD Y K   +  A RVF
Sbjct: 141 VTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVF 193

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
            + H+                               ++ V++NAM+ G S+ G + +A+ 
Sbjct: 194 LEMHD-------------------------------KDAVTYNAMMMGCSKEGLHTQALQ 222

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF  M R G+   H T    +  AA +A L +G   HA  ++    L+VFV NSL+ FY+
Sbjct: 223 LFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYS 282

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KC  ++D   +FD++ ER+ V++N +I  YA N      +  F  M+  G     +    
Sbjct: 283 KCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYAT 342

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPF 405
           +L        V  G    +Q  L   G+   +     ++D+ S+ G    AK    +   
Sbjct: 343 MLSVAGSLPDVHIGKQIHAQLVLL--GLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSE 400

Query: 406 DPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDV--SSYVMLSNALSVAG 457
              I  W AL+ G   +   E  L  F+  R   L P+    SS +  S++L++ G
Sbjct: 401 KSAIS-WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIG 455



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           +  A  +F+   + N+ S   ++           A  LF   PHRN  +W  M+  ++  
Sbjct: 59  LHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAA 118

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           GR  +A++LF  ML EG++P+  T+   +    N+    +  S H  A+KF     VFV 
Sbjct: 119 GRTSDALSLFRAMLGEGVIPDRVTVTTVL----NLPGCTV-PSLHPFAIKFGLDTHVFVC 173

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N+L+  Y K G +  +  VF ++ +++ VT+NA++ G ++ G   +A++ F  MR  GI 
Sbjct: 174 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIP 233

Query: 339 PNGVTLLGLL 348
               T   +L
Sbjct: 234 ATHFTFSSIL 243


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 258/466 (55%), Gaps = 32/466 (6%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGSV 114
           S  +VFD + D  +     +I  +++  H +EA+ LF  M     LL N      T   V
Sbjct: 269 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLAN----STTMAGV 324

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P+       +  + +H +  K GL  + FV + ++D+Y +L  I+ A R+F    + ++
Sbjct: 325 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 384

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPH-RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V++ TMI G +  E  EDAL L  +M +    VS  A                      R
Sbjct: 385 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGAS---------------------R 423

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             L PN  TL   + + A ++AL  GK  HA A+K     DV VG++L+  YAKCG ++ 
Sbjct: 424 VSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQM 483

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           S  VFD++ ++N++TWN +I  Y  +G G+EAI+    M + G++PN VT + +  AC+H
Sbjct: 484 SRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSH 543

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD-PGIGFW 412
           +G+V++G   F   K +       +HYAC+VDLL R+GR KEA + +  +P D    G W
Sbjct: 544 SGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAW 603

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LLG  +IH+N+E+GE AA+ ++ L+P   S YV+L+N  S AG WD  + +RR MKE+
Sbjct: 604 SSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQ 663

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G+ + PGCSWIE   +VH FV GD +H  ++++   L +  E++R+
Sbjct: 664 GVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRK 709



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 170/367 (46%), Gaps = 48/367 (13%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++V+  T++    +     EA+     M+L  + P EFT  SV+P+ + LE L  GK+LH
Sbjct: 179 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 238

Query: 132 AWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           A+A K G L  N FVGSA++D+Y     +    RVF+   +  +  +  MI G       
Sbjct: 239 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAG------- 291

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIA 249
                                   YSQ   ++EA+ LFI M    GL+ N +T+   + A
Sbjct: 292 ------------------------YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 327

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
                A    ++ H   VK     D FV N+L+  Y++ G ++ ++ +F K+ +R++VTW
Sbjct: 328 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 387

Query: 310 NAVICGYAQNGRGEEAIEFFERM------------RINGIRPNGVTLLGLLWACNHTGLV 357
           N +I GY  +   E+A+    +M            R++ ++PN +TL+ +L +C     +
Sbjct: 388 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS-LKPNSITLMTILPSCAALSAL 446

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            KG    + A +++         + +VD+ ++ G  + +++    +P    +  W  ++ 
Sbjct: 447 AKGKEIHAYA-IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIM 504

Query: 418 GCQIHSN 424
              +H N
Sbjct: 505 AYGMHGN 511



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 157/326 (48%), Gaps = 41/326 (12%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ-SNVFVGSAILDLYIKLS 157
           M++L I+P  + F +++ +   L+D+ LGKQ+HA   K G    +V V + +++LY K  
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRK-- 58

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
                                   CG      F    K+F  +  RN VSWN++I     
Sbjct: 59  ------------------------CG-----DFGAVYKVFDRISERNQVSWNSLISSLCS 89

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA---ALGMGKSFHACAVKFLGKLD 274
             + E A+  F  ML E + P+  TL   + A +N+     L MGK  HA  ++  G+L+
Sbjct: 90  FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELN 148

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
            F+ N+L++ Y K G +  S ++      R++VTWN V+    QN +  EA+E+   M +
Sbjct: 149 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 208

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGR 392
            G+ P+  T+  +L AC+H  ++  G    + A L++ G L    +  + +VD+     +
Sbjct: 209 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYA-LKN-GSLDENSFVGSALVDMYCNCKQ 266

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGG 418
               +  ++D  FD  IG W A++ G
Sbjct: 267 VLSGRR-VFDGMFDRKIGLWNAMIAG 291



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 152/311 (48%), Gaps = 43/311 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG     F +V++VFD + + N VS  ++I        +E A+  F  ML  N+ PS FT
Sbjct: 59  CGD----FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 114

Query: 111 FGSVIPSSTAL---EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             SV+ + + L   E L +GKQ+HA+  + G + N F+ + ++ +Y KL  +  +  +  
Sbjct: 115 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLG 173

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                ++V++ T++  L + E+  +AL+  +                             
Sbjct: 174 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLR----------------------------- 204

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFY 285
             EM+ EG+ P+  T+   + A +++  L  GK  HA A+K  G LD   FVG++L+  Y
Sbjct: 205 --EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN-GSLDENSFVGSALVDMY 261

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTL 344
             C  +     VFD + +R I  WNA+I GY+QN   +EA+  F  M  + G+  N  T+
Sbjct: 262 CNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTM 321

Query: 345 LGLLWACNHTG 355
            G++ AC  +G
Sbjct: 322 AGVVPACVRSG 332



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 58/243 (23%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-----------NIR 105
           K     ++F ++ D ++V+  T+I  +    H+E+A+ L  +M  L           +++
Sbjct: 368 KIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 427

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+  T  +++PS  AL  L  GK++HA+A K  L ++V VGSA++D+Y K   ++ + +V
Sbjct: 428 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 487

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+                               ++P +NV++WN +I  Y   G  +EA+
Sbjct: 488 FD-------------------------------QIPQKNVITWNVIIMAYGMHGNGQEAI 516

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG----------------KSFHACAVKF 269
           +L   M+ +G+ PN  T      A ++   +  G                   +AC V  
Sbjct: 517 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDL 576

Query: 270 LGK 272
           LG+
Sbjct: 577 LGR 579


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 145/450 (32%), Positives = 256/450 (56%), Gaps = 12/450 (2%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-------SEF 109
           + +   +VF +V + N+     +I  +A+ H + +AI ++ RML     P         F
Sbjct: 60  RVAHATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRF 119

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T+  ++ +   L  L+LGKQ+H    + G +SN  V ++++++Y +   +  A +VF+  
Sbjct: 120 TYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGM 179

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              +VVS+ T+I    +  +   A  +F  MP + VVSW A++ GY+  G    AV  F 
Sbjct: 180 QERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFR 239

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            M  EG  P+  ++   + A A + AL +G+  +A   +     + +V N+L+  YAKCG
Sbjct: 240 LMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCG 299

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLL 348
            ++ +L +F+ + E+++++W+ ++ G A +GR +EA++ F  M   G ++PNG+T +GLL
Sbjct: 300 CIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLL 359

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            AC+H GL+++G  YF   ++ D   ++P  EHY C+VDLL RSG+ +   + + D+P  
Sbjct: 360 SACSHAGLLDEGLDYFD--RMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLP 417

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
                W ++L  C+ H +V+    AA R++AL+PEDV + VML+N  + A +W  V+N R
Sbjct: 418 ADAKIWGSVLNACRSHGDVDTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTR 477

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGD 496
           + ++ + M + PGCS IE+ + V  FV G+
Sbjct: 478 KAIRSRSMRKTPGCSLIEVDNVVQEFVAGE 507



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 139/334 (41%), Gaps = 67/334 (20%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           ++HA A ++ L  + ++ + I+ L      +  ATRVF     PN+  +  MI    +  
Sbjct: 31  RVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQNH 90

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
           R  DA+ ++  M  R    W +  GG                        +  T P  + 
Sbjct: 91  RHLDAITVYIRMLRRRPFPWISCTGG------------------------DRFTYPFLLK 126

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A   + AL +GK  H   V+   + +  V NSLI  Y + G +  +  VFD + ER++V+
Sbjct: 127 ACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVS 186

Query: 309 WNAVI-------------------------------CGYAQNGRGEEAIEFFERMRINGI 337
           WN VI                                GY   G    A+E F  M++ G 
Sbjct: 187 WNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGF 246

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGR 392
            P+ V+++ +L AC   G +E G   Y+Y ++ +     ML+ E Y C  +V++ ++ G 
Sbjct: 247 EPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQ-----MLR-ETYVCNALVEMYAKCGC 300

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
             +A + L++   +  +  W  ++GG   H   +
Sbjct: 301 IDQALQ-LFNGMAEKDVISWSTMVGGLAAHGRAQ 333



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 93/188 (49%), Gaps = 5/188 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  +   +      VF+ +PD  VVS T ++  +     +  A+  F  M +    P +
Sbjct: 191 ISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDD 250

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            +  +V+P+   L  L LG+ ++A+  +  +    +V +A++++Y K   I++A ++F  
Sbjct: 251 VSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNG 310

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN-----AMIGGYSQTGRNEE 223
               +V+S++TM+ GL    R ++A++LF EM  +  V  N      ++   S  G  +E
Sbjct: 311 MAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDE 370

Query: 224 AVNLFIEM 231
            ++ F  M
Sbjct: 371 GLDYFDRM 378


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 258/466 (55%), Gaps = 32/466 (6%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGSV 114
           S  +VFD + D  +     +I  +++  H +EA+ LF  M     LL N      T   V
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLAN----STTMAGV 411

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P+       +  + +H +  K GL  + FV + ++D+Y +L  I+ A R+F    + ++
Sbjct: 412 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 471

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPH-RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V++ TMI G +  E  EDAL L  +M +    VS  A                      R
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGAS---------------------R 510

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             L PN  TL   + + A ++AL  GK  HA A+K     DV VG++L+  YAKCG ++ 
Sbjct: 511 VSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQM 570

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           S  VFD++ ++N++TWN +I  Y  +G G+EAI+    M + G++PN VT + +  AC+H
Sbjct: 571 SRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSH 630

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD-PGIGFW 412
           +G+V++G   F   K +       +HYAC+VDLL R+GR KEA + +  +P D    G W
Sbjct: 631 SGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAW 690

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LLG  +IH+N+E+GE AA+ ++ L+P   S YV+L+N  S AG WD  + +RR MKE+
Sbjct: 691 SSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQ 750

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G+ + PGCSWIE   +VH FV GD +H  ++++   L +  E++R+
Sbjct: 751 GVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRK 796



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 170/367 (46%), Gaps = 48/367 (13%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++V+  T++    +     EA+     M+L  + P EFT  SV+P+ + LE L  GK+LH
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 325

Query: 132 AWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           A+A K G L  N FVGSA++D+Y     +    RVF+   +  +  +  MI G       
Sbjct: 326 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAG------- 378

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIA 249
                                   YSQ   ++EA+ LFI M    GL+ N +T+   + A
Sbjct: 379 ------------------------YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
                A    ++ H   VK     D FV N+L+  Y++ G ++ ++ +F K+ +R++VTW
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 310 NAVICGYAQNGRGEEAIEFFERM------------RINGIRPNGVTLLGLLWACNHTGLV 357
           N +I GY  +   E+A+    +M            R++ ++PN +TL+ +L +C     +
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS-LKPNSITLMTILPSCAALSAL 533

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            KG    + A +++         + +VD+ ++ G  + +++    +P    +  W  ++ 
Sbjct: 534 AKGKEIHAYA-IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIM 591

Query: 418 GCQIHSN 424
              +H N
Sbjct: 592 AYGMHGN 598



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ-SNVFVGSAI 149
           EA+  +  M++L I+P  + F +++ +   L+D+ LGKQ+HA   K G    +V V + +
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL 139

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           ++LY K                          CG      F    K+F  +  RN VSWN
Sbjct: 140 VNLYRK--------------------------CG-----DFGAVYKVFDRISERNQVSWN 168

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA---ALGMGKSFHACA 266
           ++I       + E A+  F  ML E + P+  TL   + A +N+     L MGK  HA  
Sbjct: 169 SLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYG 228

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           ++  G+L+ F+ N+L++ Y K G +  S ++      R++VTWN V+    QN +  EA+
Sbjct: 229 LR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEAL 287

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMV 384
           E+   M + G+ P+  T+  +L AC+H  ++  G    + A L++ G L    +  + +V
Sbjct: 288 EYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA-LKN-GSLDENSFVGSALV 345

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           D+     +    +  ++D  FD  IG W A++ G
Sbjct: 346 DMYCNCKQVLSGRR-VFDGMFDRKIGLWNAMIAG 378



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 152/311 (48%), Gaps = 43/311 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG     F +V++VFD + + N VS  ++I        +E A+  F  ML  N+ PS FT
Sbjct: 146 CGD----FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201

Query: 111 FGSVIPSSTAL---EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             SV+ + + L   E L +GKQ+HA+  + G + N F+ + ++ +Y KL  +  +  +  
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLG 260

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                ++V++ T++  L + E+  +AL+  +                             
Sbjct: 261 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLR----------------------------- 291

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFY 285
             EM+ EG+ P+  T+   + A +++  L  GK  HA A+K  G LD   FVG++L+  Y
Sbjct: 292 --EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN-GSLDENSFVGSALVDMY 348

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTL 344
             C  +     VFD + +R I  WNA+I GY+QN   +EA+  F  M  + G+  N  T+
Sbjct: 349 CNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTM 408

Query: 345 LGLLWACNHTG 355
            G++ AC  +G
Sbjct: 409 AGVVPACVRSG 419



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 58/243 (23%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-----------NIR 105
           K     ++F ++ D ++V+  T+I  +    H+E+A+ L  +M  L           +++
Sbjct: 455 KIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 514

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+  T  +++PS  AL  L  GK++HA+A K  L ++V VGSA++D+Y K          
Sbjct: 515 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAK---------- 564

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
                           CG L+  R     K+F ++P +NV++WN +I  Y   G  +EA+
Sbjct: 565 ----------------CGCLQMSR-----KVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 603

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG----------------KSFHACAVKF 269
           +L   M+ +G+ PN  T      A ++   +  G                   +AC V  
Sbjct: 604 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDL 663

Query: 270 LGK 272
           LG+
Sbjct: 664 LGR 666


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 258/448 (57%), Gaps = 36/448 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           NVVS T II  + +    + A+ LF +M    +RP+ FT+ +++ ++ A+       Q+H
Sbjct: 360 NVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQIH 415

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A   K   +++  VG+A+ D Y K+    EA ++FE                        
Sbjct: 416 ALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFE------------------------ 451

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-A 250
               L  E   +++V+W+AM+ GY+Q G  E AV +F+++ +EG+ PN  T    + A A
Sbjct: 452 ----LIDE---KDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACA 504

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A  A++  GK FH+C++K      + V ++L++ YAK G++E +  VF +  +R++V+WN
Sbjct: 505 APTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWN 564

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I GYAQ+G G+++++ FE MR   +  +G+T +G++ AC H GLV +G  YF     +
Sbjct: 565 SMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKD 624

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
              +   EHY+CMVDL SR+G  ++A + +  +PF  G   W+ LL  C++H NV+LGE 
Sbjct: 625 YHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGEL 684

Query: 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVH 490
           AA ++++L P+D ++YV+LSN  + AG W   + +R+ M  K + +  G SWIE+K+K  
Sbjct: 685 AAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTF 744

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            F+ GD +H  +D IY  L   + ++++
Sbjct: 745 SFMAGDLSHPQSDRIYLKLEELSIRLKD 772



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 185/389 (47%), Gaps = 38/389 (9%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           +E  ++ T  V    +++      +VFDE+   NVVS T+++  + +    E+A+ LFS+
Sbjct: 124 VEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQ 183

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M L  I+P+ FTF +V+    A   +  G Q+H    K GL S +FVG++++++Y K   
Sbjct: 184 MQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSK--- 240

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
                              + M+          DA  +F  M +RN VSWN+MI G+   
Sbjct: 241 -------------------SLMV---------SDAKAVFDSMENRNAVSWNSMIAGFVTN 272

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G + EA  LF  M  EG+    +     I   ANI  +   K  H   +K     D+ + 
Sbjct: 273 GLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIK 332

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            +L+  Y+KC  ++D+  +F  +   +N+V+W A+I GY QNGR + A+  F +MR  G+
Sbjct: 333 TALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGV 392

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           RPN  T   +L A N      + ++   +   E+     P     + D  S+ G   EA 
Sbjct: 393 RPNHFTYSTILTA-NAAVSPSQIHALVVKTNYENS----PSVGTALSDSYSKIGDANEAA 447

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           + +++L  +  I  W A+L G     ++E
Sbjct: 448 K-IFELIDEKDIVAWSAMLSGYAQMGDIE 475



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 133/277 (48%), Gaps = 31/277 (11%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            Q+FDE P   +     ++  F++    +EA+ LF  +          +   V+     L
Sbjct: 46  QQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCL 105

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D  +GKQ+H    K G   +V VG++++D+Y+K  S+E                     
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVE--------------------- 144

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                     D  ++F EM  +NVVSW +++ GY Q G NE+A+ LF +M  EG+ PN  
Sbjct: 145 ----------DGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPF 194

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    +   A   A+  G   H   +K      +FVGNS+++ Y+K   + D+  VFD +
Sbjct: 195 TFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSM 254

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
             RN V+WN++I G+  NG   EA E F RMR+ G++
Sbjct: 255 ENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 94/166 (56%)

Query: 195 KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254
           +LF E P + +   N ++  +S+  +N+EA+NLF+ + R G   + S+L C +     + 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
              +GK  H   +K     DV VG SL+  Y K  S+ED   VFD++  +N+V+W +++ 
Sbjct: 107 DRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLA 166

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           GY QNG  E+A++ F +M++ GI+PN  T   +L      G VEKG
Sbjct: 167 GYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKG 212



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 110/213 (51%), Gaps = 6/213 (2%)

Query: 41  TPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           +P++ T      S+    +   ++F+ + + ++V+ + ++  +A+    E A+ +F ++ 
Sbjct: 426 SPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLA 485

Query: 101 LLNIRPSEFTFGSVIPSSTA-LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
              + P+EFTF SV+ +  A    +  GKQ H+ + K G  + + V SA++ +Y K  +I
Sbjct: 486 KEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNI 545

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGY 215
           E A  VF+   + ++VS+ +MI G  +    + +LK+F+EM  +N+    +++  +I   
Sbjct: 546 ESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISAC 605

Query: 216 SQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
           +  G   E    F  M+++  +VP      C +
Sbjct: 606 THAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMV 638


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 272/514 (52%), Gaps = 36/514 (7%)

Query: 10  SSLSLNKLSKLHSLAPNYLIETQK--ASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           S+L  N++  L S  P  L +     +S+   +  +  T   + G      +S   +FD 
Sbjct: 59  STLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDR 118

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL---NIRPSEFTFGSVIPSSTALEDL 124
           +P  +  S + I+    +      A+ ++ RML     +   +EFT  S + ++TA    
Sbjct: 119 MPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAATAARCA 178

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
             G++LH    + G+ ++  V SA+ D+Y K                             
Sbjct: 179 RAGRELHCHVVRRGIDADAVVWSALADMYAKFG--------------------------- 211

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
               R +DA  +F  MP R+VVSW AM+  Y   GR+ E   LF+ M+R G++PN  T  
Sbjct: 212 ----RLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYA 267

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + A A   +  +GK  H    K       F G++L+  Y+K G M  ++ VF  + + 
Sbjct: 268 GVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKP 327

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           ++V+W A+I GYAQNG+ +EA+  F+ +  +G RP+ VT +G+L AC H GLV+KG   F
Sbjct: 328 DLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIF 387

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
              K +       +HYAC++DLLSRSG F+ A++ +  +P  P    W +LLGGC+IH N
Sbjct: 388 HSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKN 447

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           V L  +AA  +  ++PE+ ++YV L+N  +  G +D V N+RR M+ +G+T++P  SWIE
Sbjct: 448 VRLAWWAAEALFEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIE 507

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + ++VHVF+ GD++H   +EIYA+L+    ++RE
Sbjct: 508 VGTRVHVFLVGDKSHPQAEEIYALLKKLYVKMRE 541


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 250/454 (55%), Gaps = 33/454 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D    + ++FDE+P+ + VS   II  +A        + LF  M  L        + 
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  + +L D+++GKQ+HA    +GL S   +G+A++D+Y K                 
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK----------------- 384

Query: 173 NVVSYTTMICGLLKRERFEDALKL-FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                    CG+L      DA K  F     ++ +SW A+I GY Q G++EEA+ LF +M
Sbjct: 385 ---------CGML------DAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM 429

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            R GL P+ +T    I A++++A +G+G+  H+  ++   K  VF G+ L+  YAKCG +
Sbjct: 430 RRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCL 489

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +++L  FD++ ERN ++WNAVI  YA  G  + AI+ FE M   G  P+ VT L +L AC
Sbjct: 490 DEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GL ++   YF   K +       EHYAC++D L R G F + ++ L ++PF      
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPII 609

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ++L  C+IH N EL   AA ++  ++P D + YV+LSN  + AG+W++ + +++ M++
Sbjct: 610 WTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRD 669

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           +G+ +  G SW+EIK K++ F + D    M DEI
Sbjct: 670 RGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEI 703



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 172/376 (45%), Gaps = 63/376 (16%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            ++  +VF E+ D + V+   ++   +K+  + +A+ LF+ M    I  + FTF S++  
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTV 245

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           +  +  L LG Q+HA   +     NVFV +++LD Y K                      
Sbjct: 246 AAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSK---------------------- 283

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               C  L     +D  +LF EMP R+ VS+N +I  Y+        + LF EM + G  
Sbjct: 284 ----CDCL-----DDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF- 333

Query: 238 PNHSTLPCAII--AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
            +   LP A +   A ++  + +GK  HA  V      +  +GN+LI  Y+KCG ++ + 
Sbjct: 334 -DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAK 392

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN--- 352
             F   +E++ ++W A+I GY QNG+ EEA++ F  MR  G+RP+  T   ++ A +   
Sbjct: 393 SNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLA 452

Query: 353 --------HTGLVEKGY--SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
                   H+ L+  GY  S FS + L              VD+ ++ G   EA     +
Sbjct: 453 MIGLGRQLHSYLIRSGYKSSVFSGSVL--------------VDMYAKCGCLDEALRTFDE 498

Query: 403 LPFDPGIGFWKALLGG 418
           +P    I  W A++  
Sbjct: 499 MPERNSIS-WNAVISA 513



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 177/416 (42%), Gaps = 48/416 (11%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S S    +   +F   P  N  + T ++   A      +A+ LF  ML   + P  
Sbjct: 81  LSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDR 140

Query: 109 FTFGSVI--PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
            T  +V+  P  T          LH +A K GL ++VFV + +LD Y K   +  A RVF
Sbjct: 141 VTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVF 193

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
            + H+                               ++ V++NAM+ G S+ G + +A+ 
Sbjct: 194 LEMHD-------------------------------KDAVTYNAMMMGCSKEGLHTQALQ 222

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF  M R G+   H T    +  AA +A L +G   HA  ++    L+VFV NSL+ FY+
Sbjct: 223 LFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYS 282

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KC  ++D   +FD++ ER+ V++N +I  YA N      +  F  M+  G     +    
Sbjct: 283 KCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYAT 342

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPF 405
           +L        V  G    +Q  L   G+   +     ++D+ S+ G    AK    +   
Sbjct: 343 MLSVAGSLPDVHIGKQIHAQLVLL--GLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSE 400

Query: 406 DPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDV--SSYVMLSNALSVAG 457
              I  W AL+ G   +   E  L  F+  R   L P+    SS +  S++L++ G
Sbjct: 401 KSAIS-WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIG 455



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 5/190 (2%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           +  A  +F+   + N+ S   ++           A  LF   PHRN  +W  M+  ++  
Sbjct: 59  LHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAA 118

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           GR  +A++LF  ML EG++P+  T+   +    N+    +  S H  A+KF     VFV 
Sbjct: 119 GRTSDALSLFRAMLGEGVIPDRVTVTTVL----NLPGCTV-PSLHPFAIKFGLDTHVFVC 173

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N+L+  Y K G +  +  VF ++ +++ VT+NA++ G ++ G   +A++ F  MR  GI 
Sbjct: 174 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIP 233

Query: 339 PNGVTLLGLL 348
               T   +L
Sbjct: 234 ATHFTFSSIL 243


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 157/461 (34%), Positives = 266/461 (57%), Gaps = 9/461 (1%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           +D  +   +VF+ + +    +   +I  +     ++EA+ L  +M  L I+  + T+ ++
Sbjct: 236 NDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTI 295

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSN----VFVGSAILDLYIKLSSIEEATRVFEDTH 170
           I +   +    +GKQ+HA+  K  L  N    + V +A++ LY K + ++EA ++F    
Sbjct: 296 ISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMP 355

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             N++++  ++ G +   R E+A   F+EMP +N+++   MI G +Q G  +E + LF +
Sbjct: 356 VRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQ 415

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  +G  P       A+ A + + AL  G+  HA  V    +  + VGN++IS YAKCG 
Sbjct: 416 MRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGV 475

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E +  VF  +   ++V+WN++I    Q+G G +AIE F++M   G+ P+ +T L +L A
Sbjct: 476 VEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTA 535

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C+H GLVEKG  YF+ + LE  G+   E HYA MVDL  R+G F  A+  +  +P  PG 
Sbjct: 536 CSHAGLVEKGRHYFN-SMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGA 594

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W+ALL GC+IH N++LG  AA ++  L P++  +YV+LSN  +  G+W+ V+ +R+ M
Sbjct: 595 PVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLM 654

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           +++ + + P CSWIE+++KVHVF+  D  H    E+ +V R
Sbjct: 655 RDQAVRKEPACSWIEVENKVHVFMVDDDVH---PEVLSVYR 692



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 171/367 (46%), Gaps = 57/367 (15%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTII-----------GR-------------------- 82
           +S       Q+F+E+P+ + ++ TT+I           GR                    
Sbjct: 60  KSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMI 119

Query: 83  --FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL--EDLNLGKQLHAWATKVG 138
             +A       A+ LF  M   + RP +FTF SV+ +       +   G Q+H    K G
Sbjct: 120 TGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCG-QMHCAVVKTG 178

Query: 139 LQS-NVFVGSAILDLYIK--------LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +   +  V +A+L +Y+K         S++  A ++F++    + +++TTMI G ++ + 
Sbjct: 179 MGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDD 238

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
              A ++F+ M      +WNAMI GY   G  +EA+ L  +M   G+  +  T    I A
Sbjct: 239 LNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISA 298

Query: 250 AANIAALGMGKSFHACAVKFLGKLD------VFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
            AN+ +  MGK  HA  +K   +L+      + V N+LI+ Y K   ++++  +F  +  
Sbjct: 299 CANVGSFQMGKQVHAYILK--NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPV 356

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           RNI+TWNA++ GY   GR EEA  FFE M +     N +TL  ++      G  ++G   
Sbjct: 357 RNIITWNAILSGYVNAGRMEEAKSFFEEMPVK----NLLTLTVMISGLAQNGFGDEGLKL 412

Query: 364 FSQAKLE 370
           F Q +L+
Sbjct: 413 FKQMRLD 419



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 150/350 (42%), Gaps = 65/350 (18%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +L + +HA     G +      + +L++Y K S++  A ++FE+  NP+ ++ TT+I  
Sbjct: 29  FSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITA 88

Query: 184 LLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH- 240
                  E   ++F   P   R+ V +NAMI GY+  G    A+ LF  M R+   P+  
Sbjct: 89  YCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDF 148

Query: 241 ---STLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAK--------C 288
              S L   ++   N    G     H   VK  +G +   V N+L+S Y K        C
Sbjct: 149 TFTSVLSALVLFVGNEQQCG---QMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISC 205

Query: 289 GSMEDSLLVFDKLTERNIVT-------------------------------WNAVICGYA 317
            +M  +  +FD++ +R+ +T                               WNA+I GY 
Sbjct: 206 SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYV 265

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGM 374
             G  +EA+    +MR  GI+ + +T   ++ AC + G  + G   ++Y  + +      
Sbjct: 266 HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNE------ 319

Query: 375 LKPEHYAC------MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           L P H  C      ++ L  ++ +  EA++  Y +P    I  W A+L G
Sbjct: 320 LNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR-NIITWNAILSG 368


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 163/450 (36%), Positives = 251/450 (55%), Gaps = 31/450 (6%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +     ++FD +PD NV +   ++  + +  H EEA  LF+ M   N         +++ 
Sbjct: 244 RIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVR 303

Query: 117 SSTALEDLNLGKQL--HAWATKVGL-----QSN-------VFVGSAILDL---------Y 153
                E  +L  ++   ++A K  L     QS        +F G  + D          Y
Sbjct: 304 GGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGY 363

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
           +    ++EA  +F+   N ++VS+ TMI G     +   A+ +F++M  RN VSWN++I 
Sbjct: 364 VHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVIS 423

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK--FLG 271
           G+ Q G   EA+  F+ M R+    + ST  C + A A++AAL +G+ FH+   +  ++G
Sbjct: 424 GFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSGYIG 483

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
             D F GN+LIS YAKCG + ++  VFD++   +IV+WNA+I GYA NG G EAI  F  
Sbjct: 484 --DSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFRE 541

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSR 389
           M  N +RP+ VT +G+L AC+H GL+++G+ +F+   +     L+P  EHYACMVDLL R
Sbjct: 542 MEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNS--MTKDYALRPVAEHYACMVDLLGR 599

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML 449
           SGR  EA E +  +   P  G W A+LG C++H N EL + AA ++  L+P   S+YV+L
Sbjct: 600 SGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHELAQLAAEKLYELEPHKTSNYVLL 659

Query: 450 SNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           SN  + AGKWD   N+R  +KE+G+ + PG
Sbjct: 660 SNITAEAGKWDEAQNMRVFIKERGVHKTPG 689



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 179/428 (41%), Gaps = 71/428 (16%)

Query: 49  VSCGSESDKFSSVHQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           VSC + + +        D +P D        +I  +AK   +++A+ L   M      P 
Sbjct: 111 VSCYARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPA----PD 166

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG-SAILDLYIKLSSIEEATRVF 166
             ++ SV+   T       G+ + A      + +   V  + +L+ Y++   ++ A  +F
Sbjct: 167 IISWNSVLVGLT-----RNGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLF 221

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
               +PNVVS+ T++ G  +  R  +A +LF  +P RNV +WN M+ GY +    EEA  
Sbjct: 222 AGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYK 281

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANI--AALGMGK----SFHACAVKFLGKL------- 273
           LF EM  +  + + +T+  A++    +  A   + K    SF A      G L       
Sbjct: 282 LFTEMPDKNSI-SWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDD 340

Query: 274 -----------DVFVGNSLISFYAKCGSMEDSLL-------------------------- 296
                      D    N++IS Y  CG ++++++                          
Sbjct: 341 ARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQM 400

Query: 297 -----VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
                +F K+ +RN V+WN+VI G+ QNG   EA++ F  MR +  R +  T    L AC
Sbjct: 401 RKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSAC 460

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
                +  G  + S   L   G +        ++   ++ GR  EA++   ++P  P I 
Sbjct: 461 ADLAALHVGRQFHSL--LARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPA-PDIV 517

Query: 411 FWKALLGG 418
            W AL+ G
Sbjct: 518 SWNALIDG 525



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 147/313 (46%), Gaps = 24/313 (7%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           +  A R+F+   + N VSY  M+  L +  R  DA +LF E+P RN VSWNAMI   S  
Sbjct: 27  LAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDH 86

Query: 219 GRNEEAVNLFIEM-LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
           GR  +A +LF  M  R+G      +    +   A    LG+ +       +  G      
Sbjct: 87  GRVADARDLFDAMPARDGF-----SWTLMVSCYARAGELGLARD---ALDRMPGDKCTAC 138

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N++IS YAK G  +D++ +  ++   +I++WN+V+ G  +NG    A++FF+ M    +
Sbjct: 139 YNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDM 198

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
               + L G + A    G V+     F  A +  P ++    +  +++   R+GR  EA+
Sbjct: 199 VSWNLMLEGYVRA----GDVDSAAGLF--AGVPSPNVVS---WVTLLNGYCRAGRIGEAR 249

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS-SYVMLSNALSVA 456
           E    +P D  +  W  +L G    S++E     A ++    P+  S S+  + +AL   
Sbjct: 250 ELFDRIP-DRNVAAWNVMLSGYLRLSHME----EAYKLFTEMPDKNSISWTTMISALVRG 304

Query: 457 GKWDNVSNIRREM 469
           GK     ++  +M
Sbjct: 305 GKLQEAKDLLDKM 317



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 126/301 (41%), Gaps = 57/301 (18%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           N    +A+L    +   I +A R+F++    N VS+  MI       R  DA  LF  MP
Sbjct: 41  NTVSYNAMLSALARHGRIADARRLFDEIPRRNTVSWNAMIAACSDHGRVADARDLFDAMP 100

Query: 202 HRNVVSWNAMI--------------------------------GGYSQTGRNEEAVNLFI 229
            R+  SW  M+                                 GY++ GR ++AV L  
Sbjct: 101 ARDGFSWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLR 160

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC-AVKFLGKL---DVFVGNSLISFY 285
           EM            P   I + N   +G+ ++     AVKF  ++   D+   N ++  Y
Sbjct: 161 EM------------PAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSWNLMLEGY 208

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            + G ++ +  +F  +   N+V+W  ++ GY + GR  EA E F+R+    +    V L 
Sbjct: 209 VRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLS 268

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
           G L        +E+ Y  F++  + D   +    +  M+  L R G+ +EAK+ L  +PF
Sbjct: 269 GYL----RLSHMEEAYKLFTE--MPDKNSIS---WTTMISALVRGGKLQEAKDLLDKMPF 319

Query: 406 D 406
           D
Sbjct: 320 D 320



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 146/342 (42%), Gaps = 19/342 (5%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFD 66
           + RS+  L +L++   LA    +     S   +   A+    +S  +   + +   ++FD
Sbjct: 11  VYRSNQELTRLARSGQLAAARRLFDSMPSRNTVSYNAM----LSALARHGRIADARRLFD 66

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
           E+P  N VS   +I   +      +A  LF  M      P+   F   +  S       L
Sbjct: 67  EIPRRNTVSWNAMIAACSDHGRVADARDLFDAM------PARDGFSWTLMVSCYARAGEL 120

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G    A     G +      +A++  Y K    ++A  +  +   P+++S+ +++ GL +
Sbjct: 121 GLARDALDRMPGDKCTACY-NAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTR 179

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                 A+K F EMP R++VSWN M+ GY + G  + A  LF        VP+ + +   
Sbjct: 180 NGEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAG------VPSPNVVSWV 233

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
            +      A  +G++        +   +V   N ++S Y +   ME++  +F ++ ++N 
Sbjct: 234 TLLNGYCRAGRIGEAREL--FDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNS 291

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           ++W  +I    + G+ +EA +  ++M  +        + G L
Sbjct: 292 ISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYL 333



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 78/195 (40%), Gaps = 33/195 (16%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  ++  +     QVFDE+P  ++VS   +I  +A   H  EAI +F  M   ++RP E
Sbjct: 492 ISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDE 551

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF  V+ + +           HA     G     F  S   D  ++             
Sbjct: 552 VTFVGVLSACS-----------HAGLIDEGFD---FFNSMTKDYALR------------- 584

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMP-HRNVVSWNAMIGGYSQTGRNEEAVNL 227
              P    Y  M+  L +  R  +A ++ Q M    N   W AM+G   +  +N E   L
Sbjct: 585 ---PVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGA-CRVHKNHELAQL 640

Query: 228 FIEMLREGLVPNHST 242
             E L E L P+ ++
Sbjct: 641 AAEKLYE-LEPHKTS 654


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 258/445 (57%), Gaps = 33/445 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++   +P+ +VVS T +I  + +   + EA+ LF  M    I+     F S I +   + 
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G+Q+HA +   G  +++ + +A++ LY +                          C
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYAR--------------------------C 612

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     R ++A   F+++  +N +SWN+++ G +Q+G  EEA+ +F+ MLR     N  T
Sbjct: 613 G-----RIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFT 667

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              AI AAA++A +  G+  H+  +K     +  V NSLIS YAK GS+ D+   F+ ++
Sbjct: 668 YGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS 727

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ERN+++WNA+I GY+Q+G G EA+  FE M++ GI PN VT +G+L AC+H GLV++G  
Sbjct: 728 ERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLD 787

Query: 363 YF-SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF S  K+ D  + K EHY C+VDLL R+G+   A E++ ++P       W+ LL  C I
Sbjct: 788 YFESMFKIHDL-VPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVI 846

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N+E+GE AA  +L L+PED ++YV++SN  +V+ +W +    R+ MK++G+ + PG S
Sbjct: 847 HKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRS 906

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIY 506
           WIE+K+ VH F  GD+ H + ++IY
Sbjct: 907 WIEVKNAVHAFYAGDKLHPLTNQIY 931



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 162/335 (48%), Gaps = 52/335 (15%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFS---- 59
           LL  C S  +L+K  +LHS A                   +  D +  GS  D +S    
Sbjct: 368 LLSACASVGALHKGMQLHSHAIK---------------AGMSADIILEGSLLDLYSKCAD 412

Query: 60  --SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
             + H+ F      N+V    ++  + +  +  ++  +F +M +  + P++FT+ S++ +
Sbjct: 413 VETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T+L  L LG+Q+H    K G Q NV+V S ++D+Y K   +  A               
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALA--------------- 517

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                           L++ + +P  +VVSW AMI GY Q     EA+ LF EM   G+ 
Sbjct: 518 ----------------LRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQ 561

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            ++     AI A A I AL  G+  HA +       D+ + N+LIS YA+CG ++++ L 
Sbjct: 562 FDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           F+K+ ++N ++WN+++ G AQ+G  EEA++ F RM
Sbjct: 622 FEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 173/370 (46%), Gaps = 33/370 (8%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  S S K  S  ++F  +   + VS  ++I    +Q   + A+ LF++M    ++P  
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  S++ +  ++  L+ G QLH+ A K G+ +++ +  ++LDLY K + +E A + F  
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLT 422

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           T                                  N+V WN M+  Y Q     ++  +F
Sbjct: 423 TET-------------------------------ENIVLWNVMLVAYGQLDNLSDSFEIF 451

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M  EG++PN  T P  +    ++ AL +G+  H   +K   +L+V+V + LI  YAK 
Sbjct: 452 RQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKY 511

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +  +L +  +L E ++V+W A+I GY Q+    EA++ FE M   GI+ + +     +
Sbjct: 512 GQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAI 571

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC     + +G    +Q+     G     + A ++ L +R GR +EA    ++   D  
Sbjct: 572 SACAGIRALRQGQQIHAQSYAAGFGADLSINNA-LISLYARCGRIQEAY-LAFEKIGDKN 629

Query: 409 IGFWKALLGG 418
              W +L+ G
Sbjct: 630 NISWNSLVSG 639



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 181/411 (44%), Gaps = 42/411 (10%)

Query: 12  LSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           ++ N + ++HS    Y  ++         +P +    +   S++    S  +VF+ +   
Sbjct: 174 IAFNYVKQVHSRTFYYGFDS---------SPLVANLLIDLYSKNGYIESAKKVFNCICMK 224

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++V+   +I   ++    EEAI LF  M    I P+ +   SV+ +ST ++   LG+QLH
Sbjct: 225 DIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH 284

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
               K G  S  +V + ++ LY +   +  A R+F                         
Sbjct: 285 CLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS------------------------ 320

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
                   M  R+ VS+N++I G  Q G ++ A+ LF +M R+ L P+  T+   + A A
Sbjct: 321 -------TMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACA 373

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           ++ AL  G   H+ A+K     D+ +  SL+  Y+KC  +E +   F      NIV WN 
Sbjct: 374 SVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNV 433

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           ++  Y Q     ++ E F +M++ G+ PN  T   +L  C   G +  G    +   ++ 
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHV-IKT 492

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
              L     + ++D+ ++ G+   A   L  LP D  +  W A++ G   H
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS-WTAMIAGYVQH 542



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 161/358 (44%), Gaps = 40/358 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE  + +V S   +I  F  Q    +   LF RML   I P+ +TF  V+ +    +
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 123 -DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
              N  KQ+H+     G  S+  V + ++DLY K   IE A +VF      ++V++  MI
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            GL                               SQ G  EEA+ LF +M    + P   
Sbjct: 234 SGL-------------------------------SQNGLEEEAILLFCDMHASEIFPTPY 262

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
            L   + A+  I    +G+  H   +K+    + +V N L++ Y++   +  +  +F  +
Sbjct: 263 VLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG- 360
             R+ V++N++I G  Q G  + A+E F +M+ + ++P+ +T+  LL AC   G + KG 
Sbjct: 323 NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGM 382

Query: 361 --YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
             +S+  +A +    +L+      ++DL S+    + A +F      +  I  W  +L
Sbjct: 383 QLHSHAIKAGMSADIILE----GSLLDLYSKCADVETAHKFFLTTETE-NIVLWNVML 435



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 117/270 (43%), Gaps = 9/270 (3%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AA 251
           A+K+F E  +R+V SWN MI  +     N +   LF  ML EG+ PN  T    + A   
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
              A    K  H+    +       V N LI  Y+K G +E +  VF+ +  ++IVTW A
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I G +QNG  EEAI  F  M  + I P    L  +L A     L E G        L  
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHC---LVI 288

Query: 372 PGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC--QIHSNVEL 427
                 E Y C  +V L SRS +   A+     +    G+ +  +L+ G   Q  S+  L
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSY-NSLISGLVQQGFSDRAL 347

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAG 457
             F   +   L P+ ++   +LS   SV  
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGA 377



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 5/210 (2%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           +I    +S  +   +    +  F+++ D N +S  +++   A+  ++EEA+ +F RML  
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
               + FT+GS I ++ +L ++  G+Q+H+   K G  S   V ++++ LY K  SI +A
Sbjct: 660 EAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDA 719

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQT 218
            R F D    NV+S+  MI G  +     +AL+LF+EM       N V++  ++   S  
Sbjct: 720 WREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHI 779

Query: 219 GRNEEAVNLFIEMLR-EGLVPNHSTLPCAI 247
           G  +E ++ F  M +   LVP      C +
Sbjct: 780 GLVKEGLDYFESMFKIHDLVPKSEHYVCVV 809



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           +SL+  Y + G    ++ VFD+ + R++ +WN +I  +       +    F RM   GI 
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 339 PNGVTLLGLLWAC-------NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           PNG T  G+L AC       N+   V     Y+            P     ++DL S++G
Sbjct: 157 PNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDS-------SPLVANLLIDLYSKNG 209

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGG 418
             + AK+ +++      I  W A++ G
Sbjct: 210 YIESAKK-VFNCICMKDIVTWVAMISG 235


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 161/455 (35%), Positives = 255/455 (56%), Gaps = 32/455 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +    +VS T+II  +A+     EA+ +FS+M    ++P      S++ + T ++D
Sbjct: 211 VFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDD 270

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G+ +H +  K+GL+    +  ++   Y K                          CG
Sbjct: 271 LEQGRSIHGFVIKMGLEDEPALLISLTAFYAK--------------------------CG 304

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           L+   +       F +M   NV+ WNAMI GY++ G  EEAVNLF  M+   + P+  T+
Sbjct: 305 LVTVAK-----SFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTV 359

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
             A++A+A + +L + +       K     D+FV  SLI  YAKCGS+E +  VFD+ ++
Sbjct: 360 RSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSD 419

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++V W+A+I GY  +G+G EAI  +  M+  G+ PN VT +GLL ACNH+GLV++G+  
Sbjct: 420 KDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWEL 479

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F   K +   + + EHY+C+VDLL R+G   EA  F+  +P +PG+  W ALL  C+I+ 
Sbjct: 480 FHCMK-DFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYR 538

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
            V LGE+AA ++ +LDP +   YV LSN  + +  WD V+++R  M+EKG+ +  G S I
Sbjct: 539 CVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVI 598

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           EI  K+  F  GD++H M  EI+  L+    +++E
Sbjct: 599 EINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKE 633



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 173/382 (45%), Gaps = 39/382 (10%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T  V+  S   +     ++FDE    +V     II  +++ + Y + + ++  M    
Sbjct: 90  LMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTG 149

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           + P  FTF  V+ + T L D  L   +H    K G  S+VFV + ++ LY K   I  A 
Sbjct: 150 VHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAK 209

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            VF+  ++  +VS+T++I G  +  +  +AL++F +M  RN                   
Sbjct: 210 VVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQM--RN------------------- 248

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
                      G+ P+   L   + A  ++  L  G+S H   +K   + +  +  SL +
Sbjct: 249 ----------NGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTA 298

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
           FYAKCG +  +   FD++   N++ WNA+I GYA+NG  EEA+  F  M    I+P+ VT
Sbjct: 299 FYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVT 358

Query: 344 LLGLLWACNHTGLVEKGY---SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
           +   + A    G +E       Y S++       +       ++D+ ++ G  + A+  +
Sbjct: 359 VRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTS----LIDMYAKCGSVEFARR-V 413

Query: 401 YDLPFDPGIGFWKALLGGCQIH 422
           +D   D  +  W A++ G  +H
Sbjct: 414 FDRNSDKDVVMWSAMIMGYGLH 435



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 144/314 (45%), Gaps = 20/314 (6%)

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVS--------YTTMICGLLKRERFEDALKLFQEMPHR 203
            Y  L       R  +  HN  V+S         T ++ G     +   A KLF E  + 
Sbjct: 58  FYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYP 117

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           +V  WNA+I  YS+     + V ++  M   G+ P+  T P  + A   +   G+    H
Sbjct: 118 DVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIH 177

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
              +K+    DVFV N L++ YAKCG +  + +VFD L  R IV+W ++I GYAQNG+  
Sbjct: 178 GQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAV 237

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS---YFSQAKLEDPGMLKPEHY 380
           EA+  F +MR NG++P+ + L+ +L A      +E+G S   +  +  LED    +P   
Sbjct: 238 EALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLED----EPALL 293

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE----LGEFAARRIL 436
             +    ++ G    AK F +D      +  W A++ G   + + E    L  +   R +
Sbjct: 294 ISLTAFYAKCGLVTVAKSF-FDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNI 352

Query: 437 ALDPEDVSSYVMLS 450
             D   V S V+ S
Sbjct: 353 KPDSVTVRSAVLAS 366


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 164/466 (35%), Positives = 258/466 (55%), Gaps = 32/466 (6%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGSV 114
           S  +VFD + D  +     +I  +++  H +EA+ LF  M     LL N      T   V
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLAN----STTMAGV 411

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P+       +  + +H +  K GL  + FV + ++D+Y +L  I+ A R+F    + ++
Sbjct: 412 VPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 471

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPH-RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V++ TMI G +  E  EDAL L  +M +    VS  A                      R
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGAS---------------------R 510

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
             L PN  TL   + + A ++AL  GK  HA A+K     DV VG++L+  YAKCG ++ 
Sbjct: 511 VSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQM 570

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           S  VFD++ ++N++TWN +I  Y  +G G+EAI+    M + G++PN VT + +  AC+H
Sbjct: 571 SRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSH 630

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD-PGIGFW 412
           +G+V++G   F   K +       +HYAC+VDLL R+GR KEA + +  +P D    G W
Sbjct: 631 SGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAW 690

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +LLG  +IH+N+E+GE AA+ ++ L+P   S YV+L+N  S AG WD  + +RR MKE+
Sbjct: 691 SSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQ 750

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           G+ + PGCSWIE   +VH FV GD +H  ++++   L +  E++R+
Sbjct: 751 GVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRK 796



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 170/367 (46%), Gaps = 48/367 (13%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++V+  T++    +     EA+     M+L  + P EFT  SV+P+ + LE L  GK+LH
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 325

Query: 132 AWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           A+A K G L  N FVGSA++D+Y     +    RVF+   +  +  +  MI G       
Sbjct: 326 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAG------- 378

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIA 249
                                   YSQ   ++EA+ LFI M    GL+ N +T+   + A
Sbjct: 379 ------------------------YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
                A    ++ H   VK     D FV N+L+  Y++ G ++ ++ +F K+ +R++VTW
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 310 NAVICGYAQNGRGEEAIEFFERM------------RINGIRPNGVTLLGLLWACNHTGLV 357
           N +I GY  +   E+A+    +M            R++ ++PN +TL+ +L +C     +
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS-LKPNSITLMTILPSCAALSAL 533

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            KG    + A +++         + +VD+ ++ G  + +++    +P    +  W  ++ 
Sbjct: 534 AKGKEIHAYA-IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIM 591

Query: 418 GCQIHSN 424
              +H N
Sbjct: 592 AYGMHGN 598



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ-SNVFVGSAI 149
           EA+  +  M++L I+P  + F +++ +   L+D+ LGKQ+HA   K G    +V V + +
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTL 139

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           ++LY K                          CG      F    K+F  +  RN VSWN
Sbjct: 140 VNLYRK--------------------------CG-----DFGAVYKVFDRISERNQVSWN 168

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA---ALGMGKSFHACA 266
           ++I       + E A+  F  ML E + P+  TL   + A +N+     L MGK  HA  
Sbjct: 169 SLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYG 228

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           ++  G+L+ F+ N+L++ Y K G +  S ++      R++VTWN V+    QN +  EA+
Sbjct: 229 LR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEAL 287

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMV 384
           E+   M + G+ P+  T+  +L AC+H  ++  G    + A L++ G L    +  + +V
Sbjct: 288 EYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYA-LKN-GSLDENSFVGSALV 345

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           D+     +    +  ++D  FD  IG W A++ G
Sbjct: 346 DMYCNCKQVLSGRR-VFDGMFDRKIGLWNAMIAG 378



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 152/311 (48%), Gaps = 43/311 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG     F +V++VFD + + N VS  ++I        +E A+  F  ML  N+ PS FT
Sbjct: 146 CGD----FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFT 201

Query: 111 FGSVIPSSTAL---EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             SV+ + + L   E L +GKQ+HA+  + G + N F+ + ++ +Y KL  +  +  +  
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLG 260

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                ++V++ T++  L + E+  +AL+  +                             
Sbjct: 261 SFGGRDLVTWNTVLSSLCQNEQLLEALEYLR----------------------------- 291

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFY 285
             EM+ EG+ P+  T+   + A +++  L  GK  HA A+K  G LD   FVG++L+  Y
Sbjct: 292 --EMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN-GSLDENSFVGSALVDMY 348

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTL 344
             C  +     VFD + +R I  WNA+I GY+QN   +EA+  F  M  + G+  N  T+
Sbjct: 349 CNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTM 408

Query: 345 LGLLWACNHTG 355
            G++ AC  +G
Sbjct: 409 AGVVPACVRSG 419



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 58/243 (23%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-----------NIR 105
           K     ++F ++ D ++V+  T+I  +    H+E+A+ L  +M  L           +++
Sbjct: 455 KIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 514

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+  T  +++PS  AL  L  GK++HA+A K  L ++V VGSA++D+Y K          
Sbjct: 515 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAK---------- 564

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
                           CG L+  R     K+F ++P +NV++WN +I  Y   G  +EA+
Sbjct: 565 ----------------CGCLQMSR-----KVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 603

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG----------------KSFHACAVKF 269
           +L   M+ +G+ PN  T      A ++   +  G                   +AC V  
Sbjct: 604 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDL 663

Query: 270 LGK 272
           LG+
Sbjct: 664 LGR 666


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 163/502 (32%), Positives = 266/502 (52%), Gaps = 48/502 (9%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C+ R+   + ++ K+H       +E     +      A+    +  GS  D      +VF
Sbjct: 118 CVVRTCCEVMEVKKIHGCLLKMGLE-----LDVFVGSALVNTYLKNGSMED----AQKVF 168

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
            E+   +VV    +I  +AK    +EA+ +F RM +  + PS FT   ++    +  DL+
Sbjct: 169 GELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLD 228

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
            GK +H    K+G  S V V +A++D+Y K   I                          
Sbjct: 229 NGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIG------------------------- 263

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
                 DAL +F+ +  +++ SWN++I  + Q G ++  + LF +ML  G++P+  T+  
Sbjct: 264 ------DALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITT 317

Query: 246 AIIAAANIAALGMGKSFHA-CAVKFLGKLD-------VFVGNSLISFYAKCGSMEDSLLV 297
            + A +++AAL  G+  H    +  LGK D       + V N+++  YAKCGSM ++L +
Sbjct: 318 VLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKI 377

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD ++++++ +WN +I GY  +G   EA+  F +M     +PN VTL+G+L ACNH G V
Sbjct: 378 FDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFV 437

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
             G  + +Q +     +   EHY C++D+L R+G  ++A E +  +P       W+ALLG
Sbjct: 438 SHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLG 497

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H N EL E AAR++L L+PE   SYV++SN   V G+++ V  +R+ MKE+ + + 
Sbjct: 498 ACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKT 557

Query: 478 PGCSWIEIKSKVHVFVTGDRNH 499
           PGCSWIE+K  VHVF TGDR H
Sbjct: 558 PGCSWIELKDGVHVFRTGDRTH 579



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 33/239 (13%)

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           ++LN GKQLH+     G   +    ++++++Y K   + EA  VF D  +          
Sbjct: 25  QNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCH---------- 74

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                                RNV ++NA+I G+   G   +    + +M  EG++P+  
Sbjct: 75  --------------------ERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKY 114

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T PC +     +  +   K  H C +K   +LDVFVG++L++ Y K GSMED+  VF +L
Sbjct: 115 TFPCVVRTCCEVMEV---KKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGEL 171

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + R++V WNA+I GYA+ G  +EA+E F RM + G+ P+  T+ G+L      G ++ G
Sbjct: 172 SIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNG 230



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 6/171 (3%)

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF-DKLTERNIV 307
           + A+   L  GK  H+  + +          SLI+ Y+KCG M +++LVF D   ERN+ 
Sbjct: 20  SCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVF 79

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
            +NA+I G+  NG   +  +F+++MR+ G+ P+  T   ++  C     V+K +    + 
Sbjct: 80  AYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLLKM 139

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            LE    L     + +V+   ++G  ++A++   +L     +  W A++ G
Sbjct: 140 GLE----LDVFVGSALVNTYLKNGSMEDAQKVFGELSIRD-VVLWNAMING 185


>gi|414878289|tpg|DAA55420.1| TPA: hypothetical protein ZEAMMB73_457942 [Zea mays]
          Length = 534

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 270/514 (52%), Gaps = 42/514 (8%)

Query: 36  VQKLETPAIRTDSVSCGSESDKFSSVHQVFDE-VPDL--NVVSATTIIGRFAKQHH---- 88
           V+ L  PA    +VS  + S        VFD  VP    NV   T  I  +A+       
Sbjct: 15  VRGLPLPA--RAAVSLIASSHSPGHARAVFDNAVPTACENVYLWTATIAAYARHASSSPS 72

Query: 89  -YEEAIYLFSRMLLLNI-RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
             E A+ LF  ML   + RP+ FT  SV+   +AL  + +G Q+H +    GL     V 
Sbjct: 73  VAEGALTLFRLMLRHGVPRPNAFTASSVVRCCSALRAVRVGIQVHGFLVNAGLGRAEHVR 132

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVV------------------------------- 175
           +A++D+Y     + +A RVF++    +VV                               
Sbjct: 133 AALVDMYGNHGRVADARRVFDEMSATSVVLGNTMVACYVRAGDVESGRVVFDRMVERDLI 192

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           S+ T++ G L++     A +LF+EMP RNV SWN  I  YSQ     +AV +F  M    
Sbjct: 193 SWNTLMMGYLRQGGAGVARELFEEMPDRNVNSWNMAIAAYSQERSWADAVAVFNRMRLAR 252

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
             P+ +T+   + A A + +L + +  H    K   +++  V NSLI  YAKCGS+  + 
Sbjct: 253 FQPDPATMAVLMSACAQLGSLSVARQVHGILRKGCVEMNFHVLNSLIDMYAKCGSISQAH 312

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           L+F +   ++ V++N +IC  A++G G +A++ F+ M    ++P+ VTLLG+L AC H G
Sbjct: 313 LLFVETHLKDTVSYNVMICALARHGHGRDALQVFDEMSKERLQPDAVTLLGVLSACAHAG 372

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           LV  G  YF   K        P+HYACMVDL  R+G  KEA E    +P +P  G W AL
Sbjct: 373 LVHDGKFYFESMKTNYAIEQSPDHYACMVDLYGRAGLIKEAYELARAMPMEPHAGVWGAL 432

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           +  C+ H NVE+G+ AAR ++A++P +  +YV+L+N L+   +W+ V  + + M+ KG+ 
Sbjct: 433 INACRKHCNVEVGKVAARELIAIEPRNPGTYVLLANTLARGQQWEFVETVWQSMRGKGIE 492

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +  GCSW+E+++ VH F+ G+ +H  +DEIY++L
Sbjct: 493 KTAGCSWLEVENVVHEFLMGESSHPNSDEIYSIL 526


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  294 bits (753), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 257/477 (53%), Gaps = 9/477 (1%)

Query: 48  SVSCG-----SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           S+SC      +E  + +   ++FDE+P  +++S T+++    K  H+ +AI +FS  +  
Sbjct: 54  SISCKIFRSYAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIAS 113

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
             RP  F     + +S  L D  +G  +H    + GL S + V +A++D+Y +    E A
Sbjct: 114 GHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPA 173

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF+     + V++ +M+ G +K    + AL  F +MP ++ VSW A+I G+ Q  +  
Sbjct: 174 RTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPI 233

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A+ LF +ML EG  PNH T+   + A A+I AL +G++ H    K     ++ V N+L+
Sbjct: 234 QALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALM 293

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAK GS+  +  VF+++  ++  TW  +I  +   G G +A+E F  M  +GI PN V
Sbjct: 294 DMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSV 353

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFL 400
           T + +L AC+H GL+++G   F   K+ +   + P  EHY CMVDLL R G  +EA+  +
Sbjct: 354 TFVSVLSACSHAGLIQEGRELFD--KMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALI 411

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             +  +P I  W++LL  C  H N  L E A   I+  +P D   YV+L N  +++ +W 
Sbjct: 412 DHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEIIKREPGDDGVYVLLWNMYALSNRWK 471

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
              ++R++M  + + + PGCSWIE+   VH F+  D+ H    EIY  L      ++
Sbjct: 472 EALDMRKQMLSRKIYKKPGCSWIEVDGVVHEFLVEDKTHDARREIYVTLEIMARHLK 528


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 256/456 (56%), Gaps = 14/456 (3%)

Query: 72   NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
            N+V+ T+++   A+   + E + LF RM +  I  +      V+  S  L   + GK +H
Sbjct: 1073 NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIH 1132

Query: 132  AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
             +  K G ++ +FV ++++ LY K  ++  A  +F +    N+VS+  +I         +
Sbjct: 1133 GYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCD 1192

Query: 192  DALKLFQE--------MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +A  +F +        M   NVVSW+A+IGG++  G+ EEA+ LF  M    +  N  T+
Sbjct: 1193 EAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTI 1252

Query: 244  PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
               +   A +AAL +G+  H   V+ L   ++ VGN LI+ Y K GS ++  LVF+K+  
Sbjct: 1253 ASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIEN 1312

Query: 304  RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            +++++WN ++ GY  +G GE AI  F++M  +G  P+GVT + +L AC+H GLV +G   
Sbjct: 1313 KDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGREL 1372

Query: 364  FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
            F +   E   +P M   EHYACMVDLL R+G  +EA + +  +P +P    W ALL  C+
Sbjct: 1373 FDKMIKEFRVEPQM---EHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCR 1429

Query: 421  IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            +H N E+ E  A +I  L+ E   SY++LSN  + +G+W++ + +R   K KG+ + PG 
Sbjct: 1430 MHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQ 1489

Query: 481  SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            SWI++K KV++F  G+  H   +E+Y +L+    Q+
Sbjct: 1490 SWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQM 1525



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/422 (26%), Positives = 194/422 (45%), Gaps = 59/422 (13%)

Query: 87   HHY-EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFV 145
            H Y EEA+ ++ RM  L +    FTF  VI +   +    L + +H    ++G Q N+ V
Sbjct: 951  HGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHV 1010

Query: 146  GSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP---- 201
            G+ ++ +Y K+  +++A +VFE     + VS+ TM+ G         A ++F+ M     
Sbjct: 1011 GNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGL 1070

Query: 202  HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
              N+V+W +++  +++ G++ E + LF  M   G+      L   +  + ++AA   GK 
Sbjct: 1071 EPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKV 1130

Query: 262  FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN----------- 310
             H   VK   +  +FV NSLI  Y K G++  + ++F ++  +NIV+WN           
Sbjct: 1131 IHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGW 1190

Query: 311  ----------------------------AVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
                                        AVI G+A  G+GEEA+E F RM++  ++ N V
Sbjct: 1191 CDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSV 1250

Query: 343  TLLGLLWACNHTGLVEKGYSYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            T+  +L  C     +  G          L D  +L       ++++ ++SG FKE    +
Sbjct: 1251 TIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNG---LINMYTKSGSFKEG-NLV 1306

Query: 401  YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL-----DPEDVSSYVMLSNALSV 455
            ++   +  +  W  ++ G  IH    LGE A R    +     +P+ V ++V + +A S 
Sbjct: 1307 FEKIENKDLISWNTMVAGYGIHG---LGENAIRTFDQMIKDGFEPDGV-TFVAVLSACSH 1362

Query: 456  AG 457
            AG
Sbjct: 1363 AG 1364



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 28/224 (12%)

Query: 125  NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            +L +Q+H+     G   + F+ + ++ +Y     + +A RVFE +               
Sbjct: 886  HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVS--------------- 930

Query: 185  LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
                     ++ F      N++ WN+++      G  EEA+ ++  M + G+  +  T P
Sbjct: 931  --------PIECFS-----NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFP 977

Query: 245  CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
              I A A + +  + +S H   V+   + ++ VGN L+  Y K G M+D+  VF+++  R
Sbjct: 978  LVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVR 1037

Query: 305  NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            + V+WN ++ GYA N     A E F  M   G+ PN VT   LL
Sbjct: 1038 SCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLL 1081


>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Brachypodium distachyon]
          Length = 523

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 171/507 (33%), Positives = 278/507 (54%), Gaps = 23/507 (4%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSV--SCGSESDKFSSVHQVFDEVPD 70
           +L  L +LH  +    + T +A+ Q      +R  S+  SC           ++FD  P 
Sbjct: 21  TLAHLKQLHGRS----VVTARAASQSTTFQLLRFASLRLSC------LPYARRLFDSTPH 70

Query: 71  LNVVSATTIIGRFAKQHHY----EEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALEDLN 125
            NV   + ++  +A          +A+ LF RML      P++F +  V+ ++ A+  + 
Sbjct: 71  PNVFLYSAMLSAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVYPLVLRAACAI-GVQ 129

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           L + +H+ A K G  +   + +++LD Y +   + +A ++F+     NV+S+T ++ G  
Sbjct: 130 LVRSIHSHACKSGFHAYDVIRTSLLDGYSRYGMMLDARKLFDGLTERNVISWTALVSGYA 189

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           +  +  DA+ LF  MP R+V +WNAMI G +Q G   EAV +   M+ EG   N +T+ C
Sbjct: 190 RAGKIGDAIVLFDRMPERDVAAWNAMITGCTQNGLFVEAVGICSRMVDEGFQLNGTTVSC 249

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + A  ++  L +GK  H  A +        V N LI  Y KCG+++++  +FD+ ++R+
Sbjct: 250 VLSACGHLGMLKIGKVVHGYAWRSCVGFGSSVVNGLIDMYGKCGNLKEARWMFDEFSDRS 309

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           + TWN++I   A +G  + AI  F+ MR  GI P+ VT +GLL AC H G V++G +YF 
Sbjct: 310 LTTWNSLINCLALHGHSKSAIAVFDEMRDEGIEPDVVTFVGLLNACTHGGFVDEGLTYFK 369

Query: 366 QAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
              + D   ++P  EHY C+VDLL R+GRF++A   + D+   P    W +LL  C+ H 
Sbjct: 370 L--MCDELRIEPEIEHYGCIVDLLGRAGRFEDAMNVINDMKVQPDEVIWGSLLNACRTHR 427

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM-TRVPGCSW 482
            +EL EF+ R++L L+P + +  VML+N  S  G W+ V+ IR+ MKE  M  ++PGCSW
Sbjct: 428 QLELAEFSVRKLLQLNPNNANYVVMLANLYSEGGSWEEVTKIRKLMKEDIMGKKLPGCSW 487

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           IE+  K H F +GD  H  +++IY  L
Sbjct: 488 IEVDRKTHRFYSGDDAHPESEDIYDTL 514


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 168/493 (34%), Positives = 271/493 (54%), Gaps = 41/493 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALE 122
           +F ++P+ NVVS T +IG FA    Y+EA+ LF  M    +++P++ TF S+  +   + 
Sbjct: 253 LFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIG 312

Query: 123 DLNLGKQLHA---------------------------------WAT--KVGLQSNVFVGS 147
             +LG Q HA                                 W    +  +  N    +
Sbjct: 313 FPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSCN 372

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
           ++++ YI++  +E+A  +F+     + +S+T+MI G     +   A  LF  MP R+ V+
Sbjct: 373 SMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVA 432

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           W  M+ G+ Q     EA  LF EM  +G+ P +ST    + AA  +A L  G+ FH   +
Sbjct: 433 WTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLM 492

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           K   + D+ + NSLIS YAKCG + D+  +F K+  R++++WN++I G++ +G   EA++
Sbjct: 493 KTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALK 552

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVD 385
            FE M  +G  PN VT LG+L AC+H GL+ +G+  F    + D   ++P  EHY CMV+
Sbjct: 553 VFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFD--AMSDVFAIQPQLEHYVCMVN 610

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS-NVELGEFAARRILALDPEDVS 444
           LL R+G+ +EA+EF+  LPF+P +  W ALLG C     N  +   AA+R+L LDP +  
Sbjct: 611 LLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMINTGVARRAAKRLLELDPLNAP 670

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDE 504
           ++V+L N  +  G+      +R+EM  KG+ +VPGCSWI +K + +VF++GDR H   DE
Sbjct: 671 AHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQADE 730

Query: 505 IYAVLRSCTEQIR 517
           + ++L    ++ R
Sbjct: 731 MLSLLFGTEDESR 743



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 13/227 (5%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           + NV   +A+L  Y++   + +A R FE+    NVVS+T+++CGL    R  +A +LF  
Sbjct: 104 ERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNV 163

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           MP RNVVSWN+M+ G  ++G+ EEA  +F EM      P  S +   ++    IA     
Sbjct: 164 MPERNVVSWNSMLVGLIRSGQLEEARRVFNEM------PVKSQVSWNVM----IAGYAEH 213

Query: 260 KSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
                  V F  +G  +V    S+IS Y + G++++   +F K+ ERN+V+W A+I G+A
Sbjct: 214 SRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFA 273

Query: 318 QNGRGEEAIEFFERMRIN-GIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            NG  +EA+  F  M+ N  ++PN  T + L +AC   G    G  +
Sbjct: 274 WNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQF 320



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 177/430 (41%), Gaps = 92/430 (21%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETP------AIRTDSVSCGSESDKFSS 60
           +C +SL L+K SK      N  I+  +A  + +         A+ +  V CG  SD    
Sbjct: 77  VCWTSL-LSKFSK------NGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSD---- 125

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             + F+E+P+ NVVS T+++   A      EA  LF+ M   N+         +I S   
Sbjct: 126 ACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQL 185

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
            E   +  ++     K  +  NV +       Y + S +EEA  +F+   + NVV++T+M
Sbjct: 186 EEARRVFNEM---PVKSQVSWNVMIAG-----YAEHSRMEEARVLFDGMGDRNVVTWTSM 237

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPN 239
           I G  +    ++   LFQ+MP RNVVSW AMIGG++  G  +EA+ LF+EM     + PN
Sbjct: 238 ISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPN 297

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG--------------------- 278
             T      A A I    +G  FHA  +      D + G                     
Sbjct: 298 DETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSMFGFMDFAWY 357

Query: 279 --------------NSLISFYAKCGSME------DSLLVFDKLT---------------- 302
                         NS+I+ Y + G +E      D++ V DK++                
Sbjct: 358 IFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAK 417

Query: 303 ---------ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
                    +R+ V W  ++ G+ QN    EA   F  MR+ G+ P   T   LL A   
Sbjct: 418 ACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGA 477

Query: 354 TGLVEKGYSY 363
              +++G  +
Sbjct: 478 MAYLDQGRQF 487



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 143/328 (43%), Gaps = 50/328 (15%)

Query: 9   RSSLSLNKLSKLHSLAPNYLIETQKASVQKL-ETPAIRTDSVSCGSESDKFSSVHQV--- 64
           R+S+S N  S  +S+   Y+   Q    Q L +T  +R D +S  S  + + +V Q+   
Sbjct: 361 RNSMSYNTQS-CNSMINGYIRIGQLEKAQSLFDTIPVR-DKISWTSMINGYFNVGQIAKA 418

Query: 65  ---FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
              F+ +PD + V+ T ++    +   + EA YLFS M +  + P   TF  ++ ++ A+
Sbjct: 419 CYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAM 478

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L+ G+Q H    K   + ++ + ++++ +Y K   I +A  +F    + +++S+ +MI
Sbjct: 479 AYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMI 538

Query: 182 CGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            G        +ALK+F+ M     H N V++  ++   S  G   +   LF  M      
Sbjct: 539 MGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAM------ 592

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
                        +++ A+      + C V  LG               + G +E++   
Sbjct: 593 -------------SDVFAIQPQLEHYVCMVNLLG---------------RAGKVEEAEEF 624

Query: 298 FDKLT-ERNIVTWNAV--ICGYAQNGRG 322
             KL  E ++  W A+  +CG+     G
Sbjct: 625 ISKLPFEPDLTIWGALLGVCGFGMINTG 652



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 117/263 (44%), Gaps = 52/263 (19%)

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPH-------------------------- 202
           TH   +    + I   L ++R  +A  +  EMP+                          
Sbjct: 36  THYSKLRFDDSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEA 95

Query: 203 ---------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
                    RNVV++NAM+ GY Q GR  +A   F EM    +V + ++L C +   AN 
Sbjct: 96  RALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVV-SWTSLLCGL---ANA 151

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
             +G  +         + + +V   NS++    + G +E++  VF+++  ++ V+WN +I
Sbjct: 152 GRIGEAREL----FNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMI 207

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            GYA++ R EEA   F+ M   G R N VT   ++      G V++GY  F   K+ +  
Sbjct: 208 AGYAEHSRMEEARVLFDGM---GDR-NVVTWTSMISGYCRAGNVQEGYCLFQ--KMPERN 261

Query: 374 MLKPEHYACMVDLLSRSGRFKEA 396
           ++    +  M+   + +G +KEA
Sbjct: 262 VVS---WTAMIGGFAWNGFYKEA 281


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 258/479 (53%), Gaps = 36/479 (7%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P +  + ++  S+S       + F++ P  +  + ++II  FA+      ++    +M+ 
Sbjct: 50  PLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMA 109

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
            ++RP +    S   S   L   ++GK +H  + K G  ++VFVGS+++D+Y K      
Sbjct: 110 GSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAK------ 163

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
                               CG +   R     K+F EMP RNVV+W+ M+ GY+Q G N
Sbjct: 164 --------------------CGEIVYAR-----KMFDEMPLRNVVTWSGMMYGYAQMGEN 198

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           EEA+ LF E L E L  N  +    I   AN   L +G+      +K       FVG+SL
Sbjct: 199 EEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSL 258

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           +S Y+KCG +E +  VFD++  RN+  WNA++   AQ+   ++ IE F+RM+++G++PN 
Sbjct: 259 VSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNF 318

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEF 399
           +T L +L AC+H GLV++G  YF   K      ++P  +HYA +VD+L R+G+ +EA E 
Sbjct: 319 ITFLNVLNACSHAGLVDEGKYYFDLMK---ESRIEPTDKHYASLVDMLGRAGKLEEALEI 375

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + ++P DP    W ALL  C IH N EL  FAA ++  L P     ++ LSNA +  G++
Sbjct: 376 VTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRF 435

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           ++ +  R+ ++++G  +  G SW+E ++KVH F  G+R H  + EIY  L    E++ +
Sbjct: 436 EDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEK 494



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 7/195 (3%)

Query: 236 LVP--NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            VP  N++ +   ++++A   ++  G   H   VK    L   V N+LI+FY+K     D
Sbjct: 9   FVPCHNYNQICDLLLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFD 68

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           S   F+   +++  TW+++I  +AQN     ++EF  +M    +RP+   L     +C  
Sbjct: 69  SRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGI 128

Query: 354 TGLVEKGYSY--FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
               + G S    S     D  +      + +VD+ ++ G    A++   ++P    + +
Sbjct: 129 LSRCDIGKSVHCLSMKTGYDADVFVG---SSLVDMYAKCGEIVYARKMFDEMPLRNVVTW 185

Query: 412 WKALLGGCQIHSNVE 426
              + G  Q+  N E
Sbjct: 186 SGMMYGYAQMGENEE 200


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 276/465 (59%), Gaps = 13/465 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FD + + N     T++  + + +  E+A+ L+  M+  N+ P  +T+  V+  + A+ 
Sbjct: 84  QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVV-QACAVR 142

Query: 123 DLNLG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            L  G K++H    KVG  S+V+V + ++++Y    ++ +A ++F+++   + VS+ +++
Sbjct: 143 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 202

Query: 182 CGLLKRE---RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
            G +K+    +  +A KLF EM  +++VSW+A+I GY Q G  EEA+ +FIEM   G+  
Sbjct: 203 AGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 262

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA----KCGSMEDS 294
           +   +   + A A+++ +  GK  H   ++   +  V + N+LI  Y+    KCG +E++
Sbjct: 263 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENA 322

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           L VF+ + E+ + +WNA+I G A NG  E +++ F  M+ NG+ PN +T +G+L AC H 
Sbjct: 323 LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHM 382

Query: 355 GLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           GLV++G  +F+ + +E  G ++P  +HY CMVDLL R+G   EA++ +  +P  P +  W
Sbjct: 383 GLVDEGRCHFA-SMIEKHG-IEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATW 440

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            ALLG C+ H + E+GE   R+++ L P+    +V+LSN  +  G W++V  +R  MK++
Sbjct: 441 GALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQ 500

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           G+ + PGCS IE    VH F+ GD+ H   +++  +L    ++++
Sbjct: 501 GVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLK 545



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 42/292 (14%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AA 251
           +L++F  + + N   WN M+  Y Q+   E+A+ L+  M++  + P++ T P  + A A 
Sbjct: 82  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 141

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD------------ 299
            +   G GK  H   +K     DV+V N+LI+ YA CG+M D+  +FD            
Sbjct: 142 RLLEFG-GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNS 200

Query: 300 ----------------------KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
                                 ++ E+++V+W+A+I GY QNG  EEA+  F  M  NG+
Sbjct: 201 ILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGM 260

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           R + V ++ +L AC H  +V+ G   +    +  +E    L+        D+  + G  +
Sbjct: 261 RLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVE 320

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVS 444
            A E    +  + G+  W AL+ G  ++  VE  L  F+  +   + P +++
Sbjct: 321 NALEVFNGME-EKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEIT 371



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 4/203 (1%)

Query: 274 DVFVGNSLISFYAKCG--SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           D F  + L+ F        ++ SL +FD++   N   WN ++  Y Q+   E+A+  ++ 
Sbjct: 60  DTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKL 119

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           M  N + P+  T   ++ AC    L+E G        L+            ++++ +  G
Sbjct: 120 MVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCG 178

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451
             ++A++   + P    +  W ++L G     ++     A +    +D +D+ S+  L +
Sbjct: 179 NMRDARKLFDESPVLDSVS-WNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALIS 237

Query: 452 ALSVAGKWDNVSNIRREMKEKGM 474
                G ++    +  EM   GM
Sbjct: 238 GYEQNGMYEEALVMFIEMNANGM 260


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 265/479 (55%), Gaps = 20/479 (4%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA----IYLFSRMLLLNIRPSEFT 110
           S    + H+VF+ + +     +TT+  +  + H   E     + L++RM+     P+EFT
Sbjct: 63  SGNLLNAHKVFERIEN----PSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFT 118

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYI---KLSSIEEATRVFE 167
           +  +I        L  G+Q+H      G  +NVFV +++++LY        + +A RVF+
Sbjct: 119 YSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFD 178

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           +  + N+VS+ +++ G ++    + A ++F EMP RNVVSW  MI G +Q GR ++A++L
Sbjct: 179 EIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHL 238

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL----GKLDVFVGNSLIS 283
           F EM R G+  +   L  A+ A A +  L +G   H+   + L      L V + NSLI 
Sbjct: 239 FHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIH 298

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI---RPN 340
            YA CG ++ +  VF  + +R+ ++W ++I G+A+ G  EEA+  F+ M+  G    RP+
Sbjct: 299 MYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPD 358

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
           G+T +G+L AC+H G V++G  +F     +   + + EHY CMVDLLSR+G   EA   +
Sbjct: 359 GITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLI 418

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI-LALDPEDVSSY-VMLSNALSVAGK 458
             +P  P    W ALLGGC+IH N EL    A+++ L L P+  + Y V+LSN  + A +
Sbjct: 419 ESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKR 478

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           W +V+ +R++M E G+ +  G SW++I   VH FV GD  H     +Y +L   T Q +
Sbjct: 479 WQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAK 537



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 129/276 (46%), Gaps = 17/276 (6%)

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
           L  +R  +  F S++ +   ++ L   KQ+H      G     F+   +L  YI   ++ 
Sbjct: 11  LTGLRALQQHFFSLLQTCDTIKKL---KQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLL 67

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYS 216
            A +VFE   NP+   +  MI G  + E     ++L+  M       N  +++ +IGG +
Sbjct: 68  NAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCA 127

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL--- 273
           ++    E   +   ++  G   N       +    N+ A+  G      A +   ++   
Sbjct: 128 RSRLLREGEQVHGRVVANGYCTNVFVRTSLV----NLYAIAGGYDGVRKARRVFDEIVDR 183

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           ++   NSL++ Y +CG ++ +  +FD++ ERN+V+W  +I G AQ GR ++A+  F  MR
Sbjct: 184 NIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMR 243

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQ 366
             G++ + V L+  L AC   G ++ G   +SY  +
Sbjct: 244 RAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDE 279



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 8/202 (3%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           F+   L+SFY   G++ ++  VF+++   +   WN +I G++Q+    + +E + RM   
Sbjct: 51  FLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEA 110

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
              PN  T   L+  C  + L+ +G     +  + +           +V+L + +G +  
Sbjct: 111 EAEPNEFTYSFLIGGCARSRLLREGEQVHGRV-VANGYCTNVFVRTSLVNLYAIAGGYDG 169

Query: 396 AKEF--LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNA 452
            ++   ++D   D  I  W +LL G     +V+     ARRI    PE +V S+  +   
Sbjct: 170 VRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVD----GARRIFDEMPERNVVSWTTMIAG 225

Query: 453 LSVAGKWDNVSNIRREMKEKGM 474
            +  G+     ++  EM+  G+
Sbjct: 226 CAQIGRCKQALHLFHEMRRAGV 247


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 261/479 (54%), Gaps = 4/479 (0%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A R  S    S     S  + +F  +P        T++  F  +      + L+  ML  
Sbjct: 48  AGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLST 107

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
              P+ +TF  ++ +   L DL+ G  LHA A ++G ++  FV + +L LY   + ++ A
Sbjct: 108 GFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSA 167

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            R+F+ + N +VV++T +I G  K  +   A +LF EMP +N VSW+AMI GY+Q G   
Sbjct: 168 RRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFR 227

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+ LF +M   G  PNH  +  A+ A A + AL  G+  HA   +    LD  +G +LI
Sbjct: 228 EALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALI 287

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKCG +E +  VFD++ +R++  + ++I G A +G    AIE F RM+  G+ PN V
Sbjct: 288 DMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEV 347

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFL 400
           T + LL AC+  GLVE+G   F    + +   ++P  +HY C+VDLL R+G  ++AK  +
Sbjct: 348 TFICLLSACSRVGLVEEGLRIFK--SMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVV 405

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
            ++P +P      ALL  C++H +VELG+     +     +    +V+LSN  + A +W+
Sbjct: 406 REMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWE 465

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +V+ +R+ M+EK + +VPGCS IE+   V  FV GD +H   DEI  +L    + ++  
Sbjct: 466 DVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHVFMDEIVLLLLGIDKHLKSL 524



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 135/316 (42%), Gaps = 41/316 (12%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P         C +  +     A  LF  +P R    WN M+  ++        ++L+  
Sbjct: 44  DPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKY 103

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           ML  G +PN+ T    + A A ++ L  G   HA AV+   +   FV N L+  YA C  
Sbjct: 104 MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNC 163

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGR----------------------------- 321
           M+ +  +FD    R++VTW AVI GYA++G+                             
Sbjct: 164 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQI 223

Query: 322 --GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLK 376
               EA+E F  M+I G RPN   ++G L AC   G +++G   ++Y  + ++    +L 
Sbjct: 224 GLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG 283

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC--QIHSNVELGEFAARR 434
                 ++D+ ++ G  + A   ++D   D  +  + +L+ G     HS   +  F   +
Sbjct: 284 ----TALIDMYAKCGCVETACR-VFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 338

Query: 435 ILALDPEDVSSYVMLS 450
              + P +V+   +LS
Sbjct: 339 NEGVCPNEVTFICLLS 354


>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 260/449 (57%), Gaps = 34/449 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTAL 121
           QVF E+ + NV++ T +I   A+  ++E ++ LF  M+   ++ P+  T+ S++ + + L
Sbjct: 143 QVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGL 202

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           E L  G Q+H    K+G+QS++ +GSA++D+Y K   I EA ++FE              
Sbjct: 203 EALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFE-------------- 248

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                         L +E+   ++VS   ++ G++  G  EEA+ +F++ML+ G+  + +
Sbjct: 249 --------------LAEEL---DMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGN 291

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
            +   +       +L +G+  H+  VK     + FV N LI+ Y+KCG++++S+ VFD++
Sbjct: 292 VVSVVLGVFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRM 351

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ERN VTWN++I  +A++G   +A++ +E M++ G +P  VT L LL AC+H GLV+KG 
Sbjct: 352 RERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGM 411

Query: 362 SYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             F ++  +D GM  + EH+AC+VD+L R+G   EA+ F+  LP  PG+  W+ALLG C 
Sbjct: 412 E-FLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACS 470

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           ++ + ++G++AA  + +  P+    YV+L+N  S  G W   +   R+MKE G  +  G 
Sbjct: 471 LYGDSKIGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGI 530

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           SWIEI  KVH F  GD+ H   + IY VL
Sbjct: 531 SWIEIDKKVHSFTVGDKMHPQTEMIYGVL 559



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 190/399 (47%), Gaps = 30/399 (7%)

Query: 77  TTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE-DLNLGKQLHAWAT 135
           T++I  F  Q H        S  +L ++ PS       + S    E +L+LG  LHA   
Sbjct: 19  TSLISPFRNQFHQNPFPETSSTFVLNHLDPS------FLLSICGREGNLHLGSSLHASII 72

Query: 136 KVGLQSNVFVGSAILD----LYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR--ER 189
           K    SN + G  I++    +Y +   + +A +VF++    + +S+  +I G ++     
Sbjct: 73  KSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMITRDTISWNALIGGFVRNGNSY 132

Query: 190 FEDA-----LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTL 243
           F+       +++F EM  RNV++W A+I G +Q G +E ++ LF EM+  G V PN  T 
Sbjct: 133 FKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTY 192

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A + + AL  G   H   +K   + D+ +G++L+  Y+K G + ++  +F+   E
Sbjct: 193 LSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEE 252

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG---VTLLGLLWACNHTGLVEKG 360
            ++V+   ++ G+  NG  EEAI+ F +M   GI  +G     +LG+  A     L ++ 
Sbjct: 253 LDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLRLGQQV 312

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           +S+  +       +  P     ++++ S+ G   E+ + ++D   +     W +++    
Sbjct: 313 HSFVVKKNF----ICNPFVSNGLINMYSKCGALDESMK-VFDRMRERNSVTWNSMIAAFA 367

Query: 421 IHSNV--ELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            H +    L  +   ++    P DV +++ L +A S AG
Sbjct: 368 RHGDALKALQLYEDMQLEGAKPTDV-TFLSLLHACSHAG 405



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 5/215 (2%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+S +     ++F+   +L++VS T I+  F      EEAI +F +ML + I        
Sbjct: 235 SKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVS 294

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+    A   L LG+Q+H++  K     N FV + ++++Y K  +++E+ +VF+     
Sbjct: 295 VVLGVFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRER 354

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLF 228
           N V++ +MI    +      AL+L+++M         V++ +++   S  G  ++ +   
Sbjct: 355 NSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFL 414

Query: 229 IEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSF 262
             M ++ G+ P      C +        L   ++F
Sbjct: 415 KSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNF 449


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  294 bits (752), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 178/486 (36%), Positives = 269/486 (55%), Gaps = 43/486 (8%)

Query: 43  AIRTDSVSCGSESDKFS------SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLF 96
            +R D+++     + +S      S  ++FDE+P  ++VS  T++G   +    E+A+ LF
Sbjct: 50  GLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLF 109

Query: 97  SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL 156
            +M       SEFT  SV+ +  A   +   KQLH +A K  L SNVFVG+A+LD+Y K 
Sbjct: 110 MQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAK- 168

Query: 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216
                                    CGL+K     DA  +F+ MP R+ V+W++M+ GY 
Sbjct: 169 -------------------------CGLVK-----DANLVFECMPERSDVTWSSMVAGYV 198

Query: 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276
           Q    EEA+ LF      GL  N  T+  A+ A A  AAL  GK   A + K     ++F
Sbjct: 199 QNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIF 258

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           V +SLI  YAKCG +E++  VF  + E+N+V WNA++ G++++ R  EA+ +FE+M+  G
Sbjct: 259 VISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMG 318

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRF 393
           I PN +T + +L AC+H GLVEKG  YF    +     P +L   HY+CMVD+L R+G  
Sbjct: 319 ICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVL---HYSCMVDILGRAGLL 375

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
            EAK+F+  +PFD     W +LL  C+I+ N+EL E AA+ +  ++P +  ++V+LSN  
Sbjct: 376 HEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIY 435

Query: 454 SVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           +   +W+ V+  R  +KE    +  G SWIEIK KVH F+ G+RNH    EIY  L    
Sbjct: 436 AANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLV 495

Query: 514 EQIREF 519
            ++++ 
Sbjct: 496 GEMKKI 501



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 31/218 (14%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G   HA   +VGL+++    + ++++Y K   +E A ++F++    ++VS+ TM      
Sbjct: 39  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTM------ 92

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                                    +G ++Q G  E+A+ LF++M +EG   +  T+   
Sbjct: 93  -------------------------VGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSV 127

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A A    +   K  H  A+K     +VFVG +L+  YAKCG ++D+ LVF+ + ER+ 
Sbjct: 128 VCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSD 187

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           VTW++++ GY QN   EEA+  F R +  G+  N  T+
Sbjct: 188 VTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTI 225



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           +A N AA+  G + HA  ++   + D    N L++ Y+KCG +E +  +FD++  R++V+
Sbjct: 30  SARNRAAIE-GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVS 88

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           WN ++  + QNG  E+A+  F +M+  G   +  T+  ++ AC
Sbjct: 89  WNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCAC 131


>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
 gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/414 (37%), Positives = 244/414 (58%), Gaps = 3/414 (0%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTAL--EDLNLGKQLHAWATKVGLQS-NVFVGSAILDLYIK 155
           M LL I P+  TF +++     L  +  +LG  LHA+  K+GL + N+ VG+A++D+Y K
Sbjct: 1   MRLLEIDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAK 60

Query: 156 LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY 215
              +E +   F++    N  S+ TMI G ++  +  +A+++F EMP R V+SW  +I G+
Sbjct: 61  CGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGF 120

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
            + G  EEA+  F +M    + P+  T+   + A AN+ ALG+G   H  A+K   + +V
Sbjct: 121 VKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNV 180

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
            + NSLI  Y++CG++E +  VF+K+ ER +V+WN++I G A NG  EEA+E F+ M+  
Sbjct: 181 KICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQ 240

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
           G +PN V+  G L AC+HTGLV++G  YF   +       + EHY C+VDL SR+GR ++
Sbjct: 241 GFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLED 300

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455
           A   + ++P  P      +LL  C+   +VEL E     ++ LDP   S+YV+LSN  + 
Sbjct: 301 AMSVVQNMPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAA 360

Query: 456 AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            G+WD     R  MK  G+ + PG S IEI   +H FV GD++H   ++IY++L
Sbjct: 361 VGRWDGACKQRMTMKALGIQKKPGFSSIEIGCDIHEFVAGDKSHDKAEDIYSML 414



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 155/372 (41%), Gaps = 70/372 (18%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K     +VFDE+P+  V+S T +I  F K   +EEA+  F +M +  + P   T  +V+ 
Sbjct: 94  KIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLS 153

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L LG  +H +A K GL+ NV + ++++DLY +  +IE A +VFE      +VS
Sbjct: 154 ACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVS 213

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + ++                               IGG +  G  EEA+  F  M ++G 
Sbjct: 214 WNSI-------------------------------IGGLAANGFTEEALEHFDLMQKQGF 242

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN  +   A+ A ++   +  G  +                              D + 
Sbjct: 243 KPNDVSFTGALTACSHTGLVDEGLKYF-----------------------------DIME 273

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
              K++ R I  +  ++  Y++ GR E+A+   + M    ++PN V +  LL AC   G 
Sbjct: 274 RVHKISPR-IEHYGCIVDLYSRAGRLEDAMSVVQNMP---MKPNEVVVGSLLAACRTRGD 329

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA---KEFLYDLPFDPGIGFWK 413
           VE      +     DPG     +Y  + ++ +  GR+  A   +  +  L      GF  
Sbjct: 330 VELAERLMNYLVHLDPG--ADSNYVLLSNIYAAVGRWDGACKQRMTMKALGIQKKPGF-S 386

Query: 414 ALLGGCQIHSNV 425
           ++  GC IH  V
Sbjct: 387 SIEIGCDIHEFV 398


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 260/449 (57%), Gaps = 34/449 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTAL 121
           QVF E+ + NV++ T +I   A+  ++E ++ LF  M+   ++ P+  T+ S++ + + L
Sbjct: 138 QVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLTYLSLLTACSGL 197

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           E L  G Q+H    K+G+QS++ +GSA++D+Y K   I EA ++FE              
Sbjct: 198 EALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFE-------------- 243

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                         L +E+   ++VS   ++ G++  G  EEA+ +F++ML+ G+  + +
Sbjct: 244 --------------LAEEL---DMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGN 286

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
            +   +       +L +G+  H+  VK     + FV N LI+ Y+KCG++++S+ VFD++
Sbjct: 287 VVSVVLGVFGADTSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRM 346

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ERN VTWN++I  +A++G   +A++ +E M++ G +P  VT L LL AC+H GLV+KG 
Sbjct: 347 RERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGM 406

Query: 362 SYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             F ++  +D GM  + EH+AC+VD+L R+G   EA+ F+  LP  PG+  W+ALLG C 
Sbjct: 407 E-FLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACS 465

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           ++ + ++G++AA  + +  P+    YV+L+N  S  G W   +   R+MKE G  +  G 
Sbjct: 466 LYGDSKIGKYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGI 525

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           SWIEI  KVH F  GD+ H   + IY VL
Sbjct: 526 SWIEIDKKVHSFTVGDKMHPQTEMIYGVL 554


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/520 (32%), Positives = 285/520 (54%), Gaps = 28/520 (5%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           +L +C    S+    ++HS+     I++    V  +    +    V+CG          +
Sbjct: 107 VLQLCADLKSIQDGRRIHSI-----IQSNDVEVDGVLGSKLVFMYVTCGD----LREGRR 157

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD+V +  V     ++  +AK  ++ E++ LF RM  L IR  E        S+  L D
Sbjct: 158 IFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVE--------SARKLFD 209

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
               + + +W + +    +  +    LDL+      E+   +  +T    +VS    +  
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLF------EQMLLLGINTDLATMVSVELTLNN 263

Query: 184 LL-----KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
            L     K      A+++F+ M  R+VVSW +MI GY++ G ++ +V LF EM +E L P
Sbjct: 264 CLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFP 323

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           N  T+ C + A A++AAL  G+  H   ++    LD  V N+L+  Y KCG++  + L+F
Sbjct: 324 NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLF 383

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           D + E+++V+W  +I GY  +G G EAI  F  MR +GI P+ V+ + +L+AC+H+GL++
Sbjct: 384 DMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLD 443

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +G+ +F+  +       K EHYAC+VDLL+R+G   +A +F+  +P +P    W ALL G
Sbjct: 444 EGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 503

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+I+ +V+L E  A  +  L+PE+   YV+L+N  + A KW+ V  +R  +  +G+ + P
Sbjct: 504 CRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNP 563

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           GCSWIEIK KVH+FVTGD +H + ++I  +L+    +++E
Sbjct: 564 GCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKE 603



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 186/419 (44%), Gaps = 62/419 (14%)

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE----FTFGSVIPSSTALE 122
           E  D  +      I RF +  +   A      M L+N  P       T+ SV+     L+
Sbjct: 62  ETIDCKITDYNIEICRFCELGNLRRA------MELINQSPKPDLELRTYCSVLQLCADLK 115

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +  G+++H+      ++ +  +GS ++ +Y+    + E  R+F+   N  V  +  ++ 
Sbjct: 116 SIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMN 175

Query: 183 GLLKRERFEDALKLFQ------------------EMPHRNVVSWNAMIGGYSQTGRNEEA 224
           G  K   F ++L LF+                  E+  R+V+SWN+MI GY   G +E+ 
Sbjct: 176 GYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKG 235

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           ++LF +ML  G+  + +T+                             +++ + N L+  
Sbjct: 236 LDLFEQMLLLGINTDLATMV---------------------------SVELTLNNCLLDM 268

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+K G++  ++ VF+ + ER++V+W ++I GYA+ G  + ++  F  M    + PN +T+
Sbjct: 269 YSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITM 328

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDL 403
             +L AC     +E+G        +   G     H A  +VD+  + G    A+  L+D+
Sbjct: 329 ACILPACASLAALERGQEI--HGHILRNGFSLDRHVANALVDMYLKCGALGLAR-LLFDM 385

Query: 404 PFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             +  +  W  ++ G  +H   +  +  F   R   ++P++V S++ +  A S +G  D
Sbjct: 386 IPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEV-SFISILYACSHSGLLD 443


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 261/479 (54%), Gaps = 4/479 (0%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A R  S    S     S  + +F  +P        T++  F  +      + L+  ML  
Sbjct: 23  AGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLST 82

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
              P+ +TF  ++ +   L DL+ G  LHA A ++G ++  FV + +L LY   + ++ A
Sbjct: 83  GFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSA 142

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            R+F+ + N +VV++T +I G  K  +   A +LF EMP +N VSW+AMI GY+Q G   
Sbjct: 143 RRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFR 202

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+ LF +M   G  PNH  +  A+ A A + AL  G+  HA   +    LD  +G +LI
Sbjct: 203 EALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALI 262

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKCG +E +  VFD++ +R++  + ++I G A +G    AIE F RM+  G+ PN V
Sbjct: 263 DMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEV 322

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFL 400
           T + LL AC+  GLVE+G   F    + +   ++P  +HY C+VDLL R+G  ++AK  +
Sbjct: 323 TFICLLSACSRVGLVEEGLRIFK--SMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVV 380

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
            ++P +P      ALL  C++H +VELG+     +     +    +V+LSN  + A +W+
Sbjct: 381 REMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSLDHGGVHVLLSNMYASANQWE 440

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           +V+ +R+ M+EK + +VPGCS IE+   V  FV GD +H   DEI  +L    + ++  
Sbjct: 441 DVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHVFMDEIVLLLLGIDKHLKSL 499



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 135/316 (42%), Gaps = 41/316 (12%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P         C +  +     A  LF  +P R    WN M+  ++        ++L+  
Sbjct: 19  DPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKY 78

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           ML  G +PN+ T    + A A ++ L  G   HA AV+   +   FV N L+  YA C  
Sbjct: 79  MLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNC 138

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGR----------------------------- 321
           M+ +  +FD    R++VTW AVI GYA++G+                             
Sbjct: 139 MDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQI 198

Query: 322 --GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLK 376
               EA+E F  M+I G RPN   ++G L AC   G +++G   ++Y  + ++    +L 
Sbjct: 199 GLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILG 258

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC--QIHSNVELGEFAARR 434
                 ++D+ ++ G  + A   ++D   D  +  + +L+ G     HS   +  F   +
Sbjct: 259 ----TALIDMYAKCGCVETACR-VFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 313

Query: 435 ILALDPEDVSSYVMLS 450
              + P +V+   +LS
Sbjct: 314 NEGVCPNEVTFICLLS 329


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 252/465 (54%), Gaps = 32/465 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D+     ++F E+P+++ +S   ++  +A     +E++ LF  +         F F 
Sbjct: 345 SKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFA 404

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  +    +L++G+Q+H+        S + VG++++D+Y K     EA R+F D    
Sbjct: 405 TLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSD---- 460

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                      +  ++ V W AMI  Y Q G +E+ + LF+EM 
Sbjct: 461 ---------------------------LAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQ 493

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
           R  +  + +T    + A A++A+L +GK  H+  +      +VF G++L+  YAKCGS++
Sbjct: 494 RAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIK 553

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+L +F ++  RN V+WNA+I  YAQNG G+  +  FE M  +G++P+ V+LL +L AC+
Sbjct: 554 DALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACS 613

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           H GLVE+G  YF         + K EHYA  +D+L R GRF EA++ +  +PF+P    W
Sbjct: 614 HCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMW 673

Query: 413 KALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
            ++L  C IH N EL + AA ++  +    D + YV +SN  + AG+WDNV  +++ M+E
Sbjct: 674 SSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRE 733

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           +G+ +VP  SW+EIK K HVF   D+ H    EI   L    E++
Sbjct: 734 RGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKM 778



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 168/363 (46%), Gaps = 33/363 (9%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S   S    +FD +     V+ T +IG +A+ + + EA  LF  M    I P   +  +
Sbjct: 144 KSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLAT 203

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           ++   T  + +N  +Q+H+   K+G  S + V +++LD Y K  S+              
Sbjct: 204 LLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSL-------------- 249

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                    GL        A +LF ++P R+ V++NA++ GYS+ G N EA+NLF +M  
Sbjct: 250 ---------GL--------AFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQE 292

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G  P   T    + A   +  +  G+  H   VK     +VFV N+L+ FY+K   + +
Sbjct: 293 VGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVE 352

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +F ++ E + +++N ++  YA NGR +E++E F+ ++  G          LL     
Sbjct: 353 ASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAI 412

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           +  ++ G    SQ  + D  + +      +VD+ ++ G F EA     DL     +  W 
Sbjct: 413 SLNLDIGRQIHSQTIVTD-AISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVP-WT 470

Query: 414 ALL 416
           A++
Sbjct: 471 AMI 473



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 17/292 (5%)

Query: 129 QLHAWAT--KVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
            LH  A+  K G   N +  + ++  +++   +  A ++F++  + N+ S  TMI G +K
Sbjct: 85  HLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIK 144

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                +A  LF  M  R  V+W  +IGGY+Q  +  EA  LFIEM R G+ P+H +L   
Sbjct: 145 SGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATL 204

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           +       ++   +  H+  +K      + V NSL+  Y K  S+  +  +F+ + ER+ 
Sbjct: 205 LSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDS 264

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           VT+NA++ GY++ G   EAI  F +M+  G RP   T   +L A      +E G      
Sbjct: 265 VTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVH-- 322

Query: 367 AKLEDPGMLKPEHYA-------CMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
                 G +   ++         ++D  S+  R  EA +  Y++P   GI +
Sbjct: 323 ------GFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISY 368



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 145/322 (45%), Gaps = 48/322 (14%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL I   SL+L+   ++HS         Q      +    +    V   ++  +F   ++
Sbjct: 406 LLSIAAISLNLDIGRQIHS---------QTIVTDAISEILVGNSLVDMYAKCGEFGEANR 456

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F ++   + V  T +I  + ++  +E+ + LF  M    I     T+ S++ +  +L  
Sbjct: 457 IFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLAS 516

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGKQLH+     G  SNVF GSA++D+Y K  SI++A ++                  
Sbjct: 517 LTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQM------------------ 558

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                        FQEMP RN VSWNA+I  Y+Q G  +  + LF EM+R GL P+  +L
Sbjct: 559 -------------FQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSL 605

Query: 244 PCAIIAAANIAALGMGKSFHACAV---KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
              + A ++   +  G  +        K + K + +   S I    + G  +++  +  +
Sbjct: 606 LSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYA--STIDMLCRGGRFDEAEKLMAQ 663

Query: 301 LT-ERNIVTWNAVI--CGYAQN 319
           +  E + + W++V+  CG  +N
Sbjct: 664 MPFEPDEIMWSSVLNSCGIHKN 685


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 265/469 (56%), Gaps = 18/469 (3%)

Query: 56  DKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSE 108
           D      ++FD +P    N+VS  T++   A      EA+ + +R+     L   +    
Sbjct: 121 DTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDR 180

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  SV  +   +      +++H      G++  V + +A+L+ Y K   +E+A  +F+ 
Sbjct: 181 FTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQ 240

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               + V++T+MI G  + ++  +A+++F  MP ++ ++W A+I G+ Q G  + A+ LF
Sbjct: 241 VSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELF 300

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV--KFLGKL--DVFVGNSLISF 284
            +ML +G+ P    L  A+ A A +  +  GK  H C +  + +G +  ++F+ N+L+  
Sbjct: 301 EQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELH-CFILRRNIGSVPFNIFIHNALVDM 359

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+KCG M  ++ VFD + ER+ ++WN+++ G++ NG G++++  FE M + G+RP  VT 
Sbjct: 360 YSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTF 419

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           L +L AC+H+GLV  G        +ED G+  + EHYA  +D L R+ + +EA EF+ DL
Sbjct: 420 LAVLTACSHSGLVSNGRLVLES--MEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDL 477

Query: 404 P--FDPGI-GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           P    PG  G W ALLG C++H N+EL E  A  +  L+P +   YVM+SN  + AG+WD
Sbjct: 478 PSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWD 537

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +   +R  MKEKG+ +    SWIE++S  HVFV  D +H   D+IY +L
Sbjct: 538 DARRVRGLMKEKGLKKDQAYSWIEVRSAKHVFVADDISHCEADKIYEML 586



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 39/276 (14%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+LG+ +HA   K  L S+  + + ++ LY  L S   A + F D  + N  SY T++  
Sbjct: 56  LHLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAA 115

Query: 184 LLKR-ERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-----G 235
           LL+R +   DA +LF  MP   RN+VS+N ++   +  GR  EA+ +   + R+     G
Sbjct: 116 LLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPG 175

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L  +  T+     A A I A    +  H   V    +  V + N++++ Y+K   +ED+ 
Sbjct: 176 LAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDAR 235

Query: 296 LVFDKLTERNIVTWNAVICGYA-------------------------------QNGRGEE 324
            +FD+++ R+ VTW ++I GY                                QNG  + 
Sbjct: 236 HLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDT 295

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           A+E FE+M   G+ P    L+  L AC   GLV +G
Sbjct: 296 ALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRG 331



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 34/218 (15%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  +S   +  K     QVFD +PD + ++ T +I    +    + A+ LF +ML   + 
Sbjct: 250 TSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVS 309

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS---NVFVGSAILDLYIKLSSIEEA 162
           P+ F   S + +   L  +  GK+LH +  +  + S   N+F+ +A++D+Y K   +  A
Sbjct: 310 PTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAA 369

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF+                                MP R+ +SWN+M+ G+S  G  +
Sbjct: 370 MAVFD-------------------------------WMPERDFISWNSMVTGFSHNGLGK 398

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
           +++ +F EML  G+ P H T    + A ++   +  G+
Sbjct: 399 QSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGR 436


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 169/521 (32%), Positives = 287/521 (55%), Gaps = 44/521 (8%)

Query: 1    MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
            +  +L  C S   L +  ++H L+     ET+  S   L     +     CG+      S
Sbjct: 532  LASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAK-----CGA----IDS 582

Query: 61   VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             H++   +P+ +VVS   +I  +A Q + E+A+ LF  ML+  I  +E TF S++ +   
Sbjct: 583  AHKILACMPERSVVSMNALIAGYA-QINLEQAVNLFRDMLVEGINSTEITFASLLDACHE 641

Query: 121  LEDLNLGKQLHAWATKVGLQ-SNVFVGSAILDLYIKLSSIEEATRVFEDTHNP-NVVSYT 178
             + LNLG+Q+H+   K+GLQ  + F+G ++L +Y+      +A+ +F +  NP + V +T
Sbjct: 642  QQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWT 701

Query: 179  TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
             MI GL + +    AL+L++EM   NV                               +P
Sbjct: 702  AMISGLSQNDCSVVALQLYKEMRSCNV-------------------------------LP 730

Query: 239  NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
            + +T   A+ A A ++++  G   H+         D    ++L+  YAKCG ++ S+ VF
Sbjct: 731  DQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVF 790

Query: 299  DKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
             +++ ++++++WN++I G+A+NG  E+A+  F+ M+ + + P+ VT LG+L AC+H+G V
Sbjct: 791  KEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRV 850

Query: 358  EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
             +G   F           + +H ACMVDLL R G  KEA+EF+  L F+P    W  +LG
Sbjct: 851  SEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLG 910

Query: 418  GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
             C+IH +   G+ AA +++ L+P++ S YV+LSN  + +G WD V+ +RREM+EKG+ ++
Sbjct: 911  ACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKL 970

Query: 478  PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            PGCSWI +  + ++FV GD++HH   EI A+L+  T  +RE
Sbjct: 971  PGCSWIVVGQETNMFVAGDKSHHSASEIDAILKDLTPLMRE 1011



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 214/438 (48%), Gaps = 51/438 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           + F ++ D ++++  +I+   +KQ      +  F  +    + P+EFTF  V+ S   LE
Sbjct: 115 RAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLE 174

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +  G+Q+H    K+G +S  +   A++ +Y K + + +A  +F+     + VS+T+MI 
Sbjct: 175 MVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIG 234

Query: 183 GLLKRERFEDALKLFQEM-----------------------------------PHRNVVS 207
           G +K    E+A+K+FQEM                                   P+RNVV+
Sbjct: 235 GYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVA 294

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           WN MI G+++ G   EA+  F  M + G+    STL   + A A++AAL  G   HA A+
Sbjct: 295 WNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEAL 354

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
           K     +V+VG+SL+S YAKCG ME +  VFD L E+N+V WNA++ GY QNG   E +E
Sbjct: 355 KQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVME 414

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA------ 381
            F  M+  G  P+  T   +L AC     ++ G+   S        ++    +A      
Sbjct: 415 LFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHS--------VIIKNKFASNLFVG 466

Query: 382 -CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR-RILALD 439
             +VD+ ++SG  ++A++    +     + +   ++G  Q    VE      R  +L + 
Sbjct: 467 NALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGIL 526

Query: 440 PEDVSSYVMLSNALSVAG 457
           P++VS   +LS   SV G
Sbjct: 527 PDEVSLASILSACASVRG 544



 Score =  167 bits (424), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 174/366 (47%), Gaps = 32/366 (8%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +  +   +F  +P+ NVV+   +I   AK  +  EAI  F  M    I+ +  T GSV+ 
Sbjct: 276 RLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLS 335

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +  +L  L+ G  +HA A K GL SNV+VGS+++ +Y K                     
Sbjct: 336 AIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAK--------------------- 374

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                CG     + E A K+F  +  +NVV WNAM+GGY Q G   E + LF  M   G 
Sbjct: 375 -----CG-----KMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGF 424

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            P+  T    + A A +  L +G   H+  +K     ++FVGN+L+  YAK G++ED+  
Sbjct: 425 YPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQ 484

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F+ +  R+ V+WN +I GY Q     EA   F RM + GI P+ V+L  +L AC     
Sbjct: 485 QFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRG 544

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +E+G      + ++     K    + ++D+ ++ G    A + L  +P    +     + 
Sbjct: 545 LEQGKQVHCLS-VKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIA 603

Query: 417 GGCQIH 422
           G  QI+
Sbjct: 604 GYAQIN 609



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 155/304 (50%), Gaps = 32/304 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VS  ++  K  +  +VFD + + NVV    ++G + +  +  E + LF  M      P +
Sbjct: 369 VSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDD 428

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT+ S++ +   L+ L+LG QLH+   K    SN+FVG+A++D+Y K  ++E+A + FE 
Sbjct: 429 FTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFEL 488

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
             N + VS+  +I G ++ E   +A  LF+ M                         NL 
Sbjct: 489 IRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRM-------------------------NLL 523

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
                 G++P+  +L   + A A++  L  GK  H  +VK   +  ++ G+SLI  YAKC
Sbjct: 524 ------GILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKC 577

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G+++ +  +   + ER++V+ NA+I GYAQ    E+A+  F  M + GI    +T   LL
Sbjct: 578 GAIDSAHKILACMPERSVVSMNALIAGYAQINL-EQAVNLFRDMLVEGINSTEITFASLL 636

Query: 349 WACN 352
            AC+
Sbjct: 637 DACH 640



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 185/397 (46%), Gaps = 39/397 (9%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S       Q F+ + + + VS   II  + ++    EA +LF RM LL I P E +  
Sbjct: 474 AKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLA 533

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++ +  ++  L  GKQ+H  + K G ++ ++ GS+++D+Y K  +I+ A ++       
Sbjct: 534 SILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKI------- 586

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                  + C                 MP R+VVS NA+I GY+Q    E+AVNLF +ML
Sbjct: 587 -------LAC-----------------MPERSVVSMNALIAGYAQINL-EQAVNLFRDML 621

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-DVFVGNSLISFYAKCGSM 291
            EG+     T    + A      L +G+  H+  +K   +L D F+G SL+  Y      
Sbjct: 622 VEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRT 681

Query: 292 EDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            D+ ++F + +  ++ V W A+I G +QN     A++ ++ MR   + P+  T +  L A
Sbjct: 682 TDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRA 741

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C     ++ G    + + +   G    E   + +VD+ ++ G  K + +   ++     +
Sbjct: 742 CAVVSSIKDGTE--THSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDV 799

Query: 410 GFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVS 444
             W +++ G   +   E  L  F   +   + P+DV+
Sbjct: 800 ISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVT 836



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 108/239 (45%), Gaps = 31/239 (12%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K +HA + K+G  S   +G+ I+DLY K + ++ A R F                     
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAF--------------------- 117

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                     +++  +++++WN+++  +S+ G     V  F  +   G+ PN  T    +
Sbjct: 118 ----------KQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVL 167

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            + A +  +  G+  H   VK   +   +   +LI  YAKC  + D+  +FD   E + V
Sbjct: 168 SSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKV 227

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           +W ++I GY + G  EEA++ F+ M   G  P+ V  + ++ A    G ++     FS+
Sbjct: 228 SWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSR 286



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 102/232 (43%), Gaps = 33/232 (14%)

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           K  HA ++K        +GN ++  YAKC  ++ +   F +L +++I+ WN+++  +++ 
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACN-----------HTGLVEKGYSYFSQAK 368
           G     +++F  +  +G+ PN  T   +L +C            H  +V+ G+   S  +
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCE 198

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
                         ++ + ++     +A+  ++D   +     W +++GG   +  V L 
Sbjct: 199 ------------GALIGMYAKCNFLTDARS-IFDGAVELDKVSWTSMIGG---YIKVGLP 242

Query: 429 E-----FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           E     F     +  +P+ V ++V + NA    G+ DN S++   M  + + 
Sbjct: 243 EEAVKVFQEMEKVGQEPDQV-AFVTVINAYVDLGRLDNASDLFSRMPNRNVV 293


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 250/460 (54%), Gaps = 5/460 (1%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           S GS  D      + FDE+   NVVS  ++IG +A+     EA  LF  M        EF
Sbjct: 92  SAGSLGDS----RRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEF 147

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T  S++ + +   +L  G+ +H      G   ++ +G A++D+Y K   +  A R FE  
Sbjct: 148 TLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMM 207

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              +VVS+T+M+C   K    + A   F  MP RN VSWN MI  Y Q G+  EA++L+ 
Sbjct: 208 PIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYK 267

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M   G  P+ +TL   + A   I  L +GK  H      +   D+ + NSL+  YAKCG
Sbjct: 268 QMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCG 327

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++ ++ +F ++  RN+V+WN +I G A +GR  +AI FF  M +    P+G+T + LL 
Sbjct: 328 QVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSM-VRNTSPDGITFVALLS 386

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           +C+H GL+E G  YF   +       + EHYACMVDLL R G  ++A   + ++P  P +
Sbjct: 387 SCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDV 446

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W ALLG C+IH NV++G+   +++L L+      +V++SN L    +W+++  +R+ M
Sbjct: 447 VVWGALLGACRIHGNVKIGKQVIKQLLELEGISGGLFVLISNLLYETNQWEDMKRLRKLM 506

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           KE+G  +  G S IEI + +H F   D  H  + EIYAV+
Sbjct: 507 KERGTRKDMGVSSIEINNSIHEFGVEDIRHESSSEIYAVV 546



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 180/422 (42%), Gaps = 69/422 (16%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD + D + V   TI   +       EA+ L   ML   + P+EFT   V+ + T  + 
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +    +H  A K+G    VFV +A+L  Y    S+ ++ R F++    NVVS+ +M   
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSM--- 117

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                       IGGY+Q G   EA  LF EM R+G + +  TL
Sbjct: 118 ----------------------------IGGYAQAGDTREACALFGEMRRQGFLGDEFTL 149

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC--------------- 288
              ++A +    L  G+  H   +     +D+ +G +L+  Y+KC               
Sbjct: 150 ASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPI 209

Query: 289 ----------------GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
                           GS++ +   FD + ERN V+WN +I  Y Q G+  EA++ +++M
Sbjct: 210 KSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQM 269

Query: 333 RINGIRPNGVTLLGLLWACNHTG--LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
           + +G  P+  TL+ +L AC   G   V K    + +  + +P +        ++D+ ++ 
Sbjct: 270 QSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDI---SLINSLLDMYAKC 326

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN-VELGEFAARRILALDPEDVSSYVML 449
           G+   A     ++  +  +  W  ++GG  +H   ++   F    +    P+ ++   +L
Sbjct: 327 GQVDTAIRLFREM-CNRNVVSWNVIIGGLAMHGRALDAITFFRSMVRNTSPDGITFVALL 385

Query: 450 SN 451
           S+
Sbjct: 386 SS 387


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 262/446 (58%), Gaps = 8/446 (1%)

Query: 77  TTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK 136
           T +I  +  +  ++EAI ++  M    I P  FTF +++ +  ++ DLNLG+Q HA   +
Sbjct: 119 TAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFR 178

Query: 137 VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKL 196
           +     V+VG+ ++D+Y+K  SI  A +VF++    +V+S+T +I    +    E A  L
Sbjct: 179 LRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADL 238

Query: 197 FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAAL 256
           F+ +P +++V+W AM+ G++Q  + +EA+  F  M + G+  +  T+   I A A + A 
Sbjct: 239 FESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGAS 298

Query: 257 GMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314
                    A K  +     V +G++LI  Y+KCG++E+++ VF  +  +N+ +++++I 
Sbjct: 299 KYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMIL 358

Query: 315 GYAQNGRGEEAIEFFERMRIN-GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
           G A +GR +EA++ F  M     I+PN VT +G L AC+H+GLV++G   F  A +    
Sbjct: 359 GLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVF--ASMYQTF 416

Query: 374 MLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFA 431
            ++P  +HY CMVDLL R+GR +EA E +  +  +P  G W ALLG C+IH+N ++ E A
Sbjct: 417 GVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIA 476

Query: 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS-KVH 490
           A  +  L+P+ + +Y++LSN  S AG W  V ++R+ +KEKG+ + P  SW+  K+ ++H
Sbjct: 477 AEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMH 536

Query: 491 VFVTGDRNHHMNDEIYAVLRSCTEQI 516
            F  G+ NH M+ +I   L    E++
Sbjct: 537 KFFPGNLNHPMSKKIQDKLEELVERL 562



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 8/210 (3%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T+ ++  +      S   +F+ +P  ++V+ T ++  FA+    +EA+  F RM    IR
Sbjct: 220 TELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIR 279

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL--QSNVFVGSAILDLYIKLSSIEEAT 163
             E T    I +   L       +    A K G     +V +GSA++D+Y K  ++EEA 
Sbjct: 280 ADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAV 339

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-----NVVSWNAMIGGYSQT 218
            VF   +N NV SY++MI GL    R ++AL LF  M  +     N V++   +   S +
Sbjct: 340 NVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHS 399

Query: 219 GRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
           G  ++   +F  M +  G+ P      C +
Sbjct: 400 GLVDQGRQVFASMYQTFGVEPTRDHYTCMV 429


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 255/454 (56%), Gaps = 9/454 (1%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N++    +      Q H   ++Y   RM    + P   TF  ++PS      L LG++ H
Sbjct: 27  NIIIRAIVHNVSPPQRHSPISVYF--RMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTH 84

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           A     GL  + FV +++L++Y     +  A R+F+++ + ++ ++ +++    K     
Sbjct: 85  AQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLIN 144

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML----REGLV-PNHSTLPCA 246
            A KLF EMP RNV+SW+ +I GY   G+ +EA++LF EM      E  V PN  T+   
Sbjct: 145 HARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTV 204

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-TERN 305
           + A   + AL  GK  H+   K+  ++D+ +G +LI  YAKCGS+E +  VFD L ++++
Sbjct: 205 LSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKD 264

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           +  ++A+IC  A  G  +E  + F  M   N I PN VT +G+L AC H GL+ KG SYF
Sbjct: 265 VKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYF 324

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
                E       +HY CMVDL  RSG  KEA+ F+  +P +P +  W +LL G ++  +
Sbjct: 325 KMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGD 384

Query: 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIE 484
           ++  E A +R++ LDP +  +YV+LSN  +  G+W  V  IR EM+ KG+ +VPGCS++E
Sbjct: 385 IKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVE 444

Query: 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           ++  VH FV GD +   ++ IYA+L    +++RE
Sbjct: 445 VEGVVHEFVVGDESQQESERIYAMLEEIMQRLRE 478



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 18/291 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-----LNIRPSEFTFGSVIPS 117
           ++FDE+P+ NV+S + +I  +     Y+EA+ LF  M L     + + P++FT  +V+ +
Sbjct: 148 KLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSA 207

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVS 176
              L  L  GK +H++  K G++ ++ +G+A++D+Y K  S+E A RVF+      +V +
Sbjct: 208 CGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKA 267

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA-----MIGGYSQTGRNEEAVNLFIEM 231
           Y+ MIC L      ++  ++F EM   N ++ N+     ++G     G   +  + F  M
Sbjct: 268 YSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMM 327

Query: 232 LRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
             E G+ P+     C +        +   +SF A       + DV +  SL+S     G 
Sbjct: 328 TEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIA---SMPMEPDVLIWGSLLSGSRMLGD 384

Query: 291 MEDSLLVFDKLTERNIVTWNAVIC---GYAQNGRGEEAIEFFERMRINGIR 338
           ++       +L E + +   A +     YA+ GR  E       M + GI+
Sbjct: 385 IKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIK 435


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 256/463 (55%), Gaps = 34/463 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F++    F+ +   ++V+  ++I  +A+      AI +F ++ L  I P   T   V+P+
Sbjct: 481 FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA 540

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L DL+ G  +H    K+G +S+  V +A++D+Y K  S+  A  +F  T       +
Sbjct: 541 CALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT------DF 594

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T                        ++ V+WN +I  Y Q G  +EA++ F +M  E   
Sbjct: 595 T------------------------KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 630

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T    + AAA +AA   G +FHAC ++     +  VGNSLI  YAKCG ++ S  +
Sbjct: 631 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKL 690

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++  ++ V+WNA++ GYA +G G+ AI  F  M+ + ++ + V+ + +L AC H GLV
Sbjct: 691 FNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLV 750

Query: 358 EKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           E+G   F    + D   +KP  EHYACMVDLL R+G F E   F+  +P +P  G W AL
Sbjct: 751 EEGRKIFHS--MSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGAL 808

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           LG C++HSNV+LGE A   ++ L+P + + +V+LS+  + +G+W +    R +M + G+ 
Sbjct: 809 LGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK 868

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + PGCSW+E+K+KVH F  GD++H   + ++ +  +  E++ +
Sbjct: 869 KTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEK 911



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 42/401 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD++ D + VS  T++  +A    + E + LF +M L N+R ++ +  S   ++    
Sbjct: 284 RVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETI 343

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL  GK++H  A +  + S++ V + ++ +Y K                          C
Sbjct: 344 DLEKGKEIHGCALQQRIDSDILVATPLMVMYAK--------------------------C 377

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G       E A +LF  +  R++V+W+A+I    QTG  EEA++LF EM  + + PN  T
Sbjct: 378 G-----ETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVT 432

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+++ L +GKS H   VK     D+  G +L+S YAKCG    +L  F++++
Sbjct: 433 LMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS 492

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
            R+IVTWN++I GYAQ G    AI+ F ++R++ I P+  T++G++ AC     +++G  
Sbjct: 493 SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTC 552

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGG 418
            +    +   E    +K      ++D+ ++ G    A EFL++   F      W  ++  
Sbjct: 553 IHGLIVKLGFESDCHVK----NALIDMYAKCGSLPSA-EFLFNKTDFTKDEVTWNVIIAA 607

Query: 419 CQI--HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
                H+   +  F   R+    P  V+   +L  A  +A 
Sbjct: 608 YMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 33/297 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD  P+ + +   ++I  + +   Y EA+ ++  M+   + P ++TF  V+ + T   +
Sbjct: 85  VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G   H    + GL+ +VF+G+ ++D+Y K+                          G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKM--------------------------G 178

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            LKR R     ++F +MP R+VV+WNAMI G SQ+    EAV+ F  M   G+ P+  +L
Sbjct: 179 DLKRAR-----EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                    ++ + + +S H     F       V N LI  Y+KCG ++ +  VFD++ +
Sbjct: 234 LNLFPGICKLSNIELCRSIHGYV--FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVD 291

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++ V+W  ++ GYA NG   E +E F++M++  +R N V+ +    A   T  +EKG
Sbjct: 292 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 33/300 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD++P  +VV+   +I   ++     EA+  F  M L+ + PS  +  ++ P    L 
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLS 244

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           ++ L + +H +  +    S V  G  ++DLY K   ++ A RVF+   + + VS+ TM+ 
Sbjct: 245 NIELCRSIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMA 302

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G      F + L+LF +M   NV                                 N  +
Sbjct: 303 GYAHNGCFVEVLELFDKMKLGNV-------------------------------RINKVS 331

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              A +AAA    L  GK  H CA++     D+ V   L+  YAKCG  E +  +F  L 
Sbjct: 332 AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ 391

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R++V W+A+I    Q G  EEA+  F+ M+   ++PN VTL+ +L AC    L++ G S
Sbjct: 392 GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 89/156 (57%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A  +F   P+ + + WN+MI  Y+++ +  EA+ ++  M+ +GL P+  T    + A   
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
              L  G  FH    +   + DVF+G  L+  Y+K G ++ +  VFDK+ +R++V WNA+
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           I G +Q+    EA++FF  M++ G+ P+ V+LL L 
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           +L S + KC        VFD     + + WN++I  Y ++ +  EA+E +  M   G+ P
Sbjct: 71  NLYSLFHKCDLARS---VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEP 127

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKE 398
           +  T   +L AC  TG +      +   +++  G+ +     A +VD+ S+ G  K A+E
Sbjct: 128 DKYTFTFVLKAC--TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRARE 185

Query: 399 FLYDLPFDPGIGFWKALLGG-CQIHSNVELGE-FAARRILALDPEDVS 444
               +P    +  W A++ G  Q     E  + F + +++ ++P  VS
Sbjct: 186 VFDKMPKRDVVA-WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVS 232


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/463 (35%), Positives = 253/463 (54%), Gaps = 18/463 (3%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG E     S H+ F ++P+    S  T+I  ++K   ++EA  LF +M   N+     +
Sbjct: 58  CGCEE----SAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNV----VS 109

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + S+I       +L   +Q+H  A  VG++ NV + +A++D Y K      +  VF    
Sbjct: 110 YNSLISG-----NLQWLRQVHGVAVIVGMEWNVILNNALIDAYGKCGEPNLSFSVFCYMP 164

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             NVVS+T+M+    +  R ++A ++F++MP +N VSW A++ G+ + G  +EA ++F +
Sbjct: 165 ERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQ 224

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV---KFLGKLDVFVGNSLISFYAK 287
           ML EG+ P+  T    I A A  A +G GK  H   +   K     +V+V N+LI  YAK
Sbjct: 225 MLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAK 284

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG M+ +  +F+    R++VTWN +I G+AQNG GEE++  F RM    + PN VT LG+
Sbjct: 285 CGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGV 344

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--F 405
           L  CNH GL  +G       + +     K EHYA ++DLL R  R  EA   +  +P   
Sbjct: 345 LSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGI 404

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
              I  W A+LG C++H N++L   AA ++  L+PE+   YVML+N  + +GKW     I
Sbjct: 405 KNHIAVWGAVLGACRVHGNLDLARKAAEKLFELEPENTGRYVMLANIYAASGKWGGAKRI 464

Query: 466 RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAV 508
           R  MKE+ + + P CS IE+++  H FV  D+ H   +EI  V
Sbjct: 465 RNVMKERCLEKEPACSRIELRNARHEFVAKDKFHPQVEEICEV 507



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 159/356 (44%), Gaps = 14/356 (3%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           ML  ++  S   +  +I        + L   +H    K  L  + F+ + ++D Y K   
Sbjct: 1   MLPNDVISSVEKYSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGC 60

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
            E A + F D  N    S+ T+I    K   F++A  LF +MP RNVVS+N++I G  Q 
Sbjct: 61  EESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQW 120

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
            R    V + + M    ++ N            N+       SF      ++ + +V   
Sbjct: 121 LRQVHGVAVIVGMEWNVILNNALIDAYGKCGEPNL-------SFSVFC--YMPERNVVSW 171

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
            S++  Y +   ++++  VF  +  +N V+W A++ G+ +NG  +EA + F++M   G+R
Sbjct: 172 TSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVR 231

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEA 396
           P+  T + ++ AC    L+ +G     Q    D        Y C  ++D+ ++ G  K A
Sbjct: 232 PSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSA 291

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDVSSYVMLS 450
            E L+++     +  W  L+ G   + + E      RR++   ++P  V+   +LS
Sbjct: 292 -ENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLS 346


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/494 (33%), Positives = 263/494 (53%), Gaps = 44/494 (8%)

Query: 37  QKLETPAIRT---DSVSCG--------SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           ++L + AIR+   D V C         S         +VFD + D +V+S T +I  + K
Sbjct: 289 KQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMK 348

Query: 86  QHHY-EEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNV 143
             +   EAI LFS M+   ++ P+ FTF S   +   L D  +GKQ+   A K GL SN 
Sbjct: 349 NCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNS 408

Query: 144 FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
            V ++++ +++K                                +R EDA + F+ +  +
Sbjct: 409 SVANSVISMFVK-------------------------------SDRMEDAQRAFESLSEK 437

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           N+VS+N  + G  +    E+A  L  E+    L  +  T    +   AN+ ++  G+  H
Sbjct: 438 NLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIH 497

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
           +  VK     +  V N+LIS Y+KCGS++ +  VF+ +  RN+++W ++I G+A++G   
Sbjct: 498 SQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAI 557

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383
             +E F +M   G++PN VT + +L AC+H GLV +G+ +F+    +     K EHYACM
Sbjct: 558 RVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACM 617

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443
           VDLL R+G   +A EF+  +PF   +  W+  LG C++HSN ELG+ AAR+IL LDP + 
Sbjct: 618 VDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEP 677

Query: 444 SSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMND 503
           ++Y+ LSN  + AGKW+  + +RR+MKE+ + +  GCSWIE+  K+H F  GD  H    
Sbjct: 678 AAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAH 737

Query: 504 EIYAVLRSCTEQIR 517
           +IY  L     +I+
Sbjct: 738 QIYDELDRLITEIK 751



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 165/374 (44%), Gaps = 41/374 (10%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S K   V +        +VVS + ++  +       +AI +F   L L + P+++ + +
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 114 VIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           VI + +  + + +G+    +  K G  +S+V VG +++D+++K                 
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK----------------- 214

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                            FE+A K+F +M   NVV+W  MI    Q G   EA+  F++M+
Sbjct: 215 -------------GENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMV 261

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC---G 289
             G   +  TL     A A +  L +GK  H+ A++  G +D  V  SL+  YAKC   G
Sbjct: 262 LSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIR-SGLVDD-VECSLVDMYAKCSADG 319

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQN-GRGEEAIEFFERMRING-IRPNGVTLLGL 347
           S++D   VFD++ + ++++W A+I GY +N     EAI  F  M   G + PN  T    
Sbjct: 320 SVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSA 379

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFD 406
             AC +      G     QA     G+      A  ++ +  +S R ++A+     L   
Sbjct: 380 FKACGNLSDPRVGKQVLGQAF--KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEK 437

Query: 407 PGIGFWKALLGGCQ 420
             + +   L G C+
Sbjct: 438 NLVSYNTFLDGTCR 451



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 155/335 (46%), Gaps = 52/335 (15%)

Query: 104 IRPSE-FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           IRP +  TF S++ S     D  LGK +HA   +  ++ +  + ++++ LY K     +A
Sbjct: 57  IRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKA 116

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VFE           TM                 +    R+VVSW+AM+  Y   GR  
Sbjct: 117 EDVFE-----------TM-----------------RRFGKRDVVSWSAMMACYGNNGREL 148

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-----DVFV 277
           +A+ +F+E L  GLVPN       I A +N   +G+G+      + FL K      DV V
Sbjct: 149 DAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGR----VTLGFLMKTGHFESDVCV 204

Query: 278 GNSLISFYAKC-GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           G SLI  + K   S E++  VFDK++E N+VTW  +I    Q G   EAI FF  M ++G
Sbjct: 205 GCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSG 264

Query: 337 IRPNGVTLLGLLWAC---NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR---S 390
              +  TL  +  AC    +  L ++ +S+  ++ L D      +    +VD+ ++    
Sbjct: 265 FESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVD------DVECSLVDMYAKCSAD 318

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
           G   + ++ ++D   D  +  W AL+ G   + N+
Sbjct: 319 GSVDDCRK-VFDRMEDHSVMSWTALITGYMKNCNL 352



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 4/141 (2%)

Query: 224 AVNLFIEMLREGLVPNHS-TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           AV+    M R+G+ P  S T    + +        +GK  HA  ++F  + D  + NSLI
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 283 SFYAKCGS---MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           S Y+K G     ED      +  +R++V+W+A++  Y  NGR  +AI+ F      G+ P
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 340 NGVTLLGLLWACNHTGLVEKG 360
           N      ++ AC+++  V  G
Sbjct: 165 NDYCYTAVIRACSNSDFVGVG 185


>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
 gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
          Length = 608

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 265/469 (56%), Gaps = 18/469 (3%)

Query: 56  DKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSE 108
           D      ++FD +P    N+VS  T++   A      EA+ + +R+     L   +    
Sbjct: 113 DTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPGLAMDR 172

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  SV  +   +      +++H      G++  V + +A+L+ Y K   +E+A  +F+ 
Sbjct: 173 FTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDARHLFDQ 232

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               + V++T+MI G  + ++  +A+++F  MP ++ ++W A+I G+ Q G  + A+ LF
Sbjct: 233 VSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELF 292

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV--KFLGKL--DVFVGNSLISF 284
            +ML +G+ P    L  A+ A A +  +  GK  H C +  + +G +  ++F+ N+L+  
Sbjct: 293 EQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELH-CFILRRNIGSVPFNIFIHNALVDM 351

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+KCG M  ++ VFD + ER+ ++WN+++ G++ NG G++++  FE M + G+RP  VT 
Sbjct: 352 YSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTF 411

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           L +L AC+H+GLV  G        +ED G+  + EHYA  +D L R+ + +EA EF+ DL
Sbjct: 412 LAVLTACSHSGLVSNGRLVLES--MEDHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDL 469

Query: 404 P--FDPGI-GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           P    PG  G W ALLG C++H N+EL E  A  +  L+P +   YVM+SN  + AG+WD
Sbjct: 470 PSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMMSNIYAAAGQWD 529

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +   +R  MKEKG+ +    SWIE++S  HVFV  D +H   D+IY +L
Sbjct: 530 DARRVRGLMKEKGLKKDQAYSWIEVRSAKHVFVADDISHCEADKIYEML 578



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 129/276 (46%), Gaps = 39/276 (14%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+LG+ +HA   K  L S+  + + ++ LY  L S   A + F D  + N  SY T++  
Sbjct: 48  LHLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPHKNAHSYNTLLAA 107

Query: 184 LLKR-ERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-----G 235
           LL+R +   DA +LF  MP   RN+VS+N ++   +  GR  EA+ +   + R+     G
Sbjct: 108 LLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVVARLARDRFLGPG 167

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           L  +  T+     A A I A    +  H   V    +  V + N++++ Y+K   +ED+ 
Sbjct: 168 LAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLNAYSKARRVEDAR 227

Query: 296 LVFDKLTERNIVTWNAVICGYA-------------------------------QNGRGEE 324
            +FD+++ R+ VTW ++I GY                                QNG  + 
Sbjct: 228 HLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDT 287

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           A+E FE+M   G+ P    L+  L AC   GLV +G
Sbjct: 288 ALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRG 323



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 34/218 (15%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  +S   +  K     QVFD +PD + ++ T +I    +    + A+ LF +ML   + 
Sbjct: 242 TSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGHEQNGEEDTALELFEQMLAKGVS 301

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS---NVFVGSAILDLYIKLSSIEEA 162
           P+ F   S + +   L  +  GK+LH +  +  + S   N+F+ +A++D+Y K   +  A
Sbjct: 302 PTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMMAA 361

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF+                                MP R+ +SWN+M+ G+S  G  +
Sbjct: 362 MAVFD-------------------------------WMPERDFISWNSMVTGFSHNGLGK 390

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
           +++ +F EML  G+ P H T    + A ++   +  G+
Sbjct: 391 QSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGR 428


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 262/457 (57%), Gaps = 1/457 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +  + P  +V+S T++I  +++ +   EA+  F  ML   I P E T  +V+ +   L+D
Sbjct: 195 LLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKD 254

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSYTTMIC 182
           L LG+ LH    + G+ ++  +  A++D+Y K      A +VF+     P   S+  +I 
Sbjct: 255 LELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIID 314

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G  K    + A  LF EM  R+++++N+M+ GY  +G+  EA+ LF+ M R  L  ++ T
Sbjct: 315 GYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFT 374

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++ AL  G++ HAC  + L + D+++G +L+  Y KCG ++++ +VF ++ 
Sbjct: 375 VVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMG 434

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +R++ TW A+I G A NG G+ A+E F +MR +G +PN V+ + +L AC+H+ L+ +G  
Sbjct: 435 KRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRL 494

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF + ++      + EHY CM+DLL RSG   EA + +  +P  P    W ++L  C++H
Sbjct: 495 YFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVH 554

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            +++L + AA  +L L+P++   YV L N    + +W+N S IR  M+E+ + +  G S 
Sbjct: 555 KHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSS 614

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           I +  +VH FV  D++H    EI A+L   + +++  
Sbjct: 615 ITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSL 651



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 185/428 (43%), Gaps = 44/428 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL- 121
            +FD +P    +  T +               LF RM    +RP  FTF  +   S++  
Sbjct: 58  HLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSS 117

Query: 122 --EDLNLGKQLHAWATKVGLQSNV-FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
               L L   LHA   +  L S   FV ++++ +YI+L    +A R F++ H  + V++T
Sbjct: 118 RPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWT 177

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
            +I GL K     D   L  + P R+V+SW ++I  YS+  R  EAV  F  ML  G+ P
Sbjct: 178 MLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAP 237

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  T+   + A A +  L +G+S H    +        +  +LI  YAKCG    +  VF
Sbjct: 238 DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVF 297

Query: 299 DKLTE--------------------------------RNIVTWNAVICGYAQNGRGEEAI 326
           D L                                  R+I+T+N+++ GY  +G+  EA+
Sbjct: 298 DALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREAL 357

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMV 384
             F  MR + +R +  T++ LL AC   G +++G +    A +E   +++ + Y    ++
Sbjct: 358 LLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL--HACIEQ-RLVEADIYLGTALL 414

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPED 442
           D+  + GR  EA   ++       +  W A++ G   +      L  F   R     P  
Sbjct: 415 DMYMKCGRVDEAT-IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNS 473

Query: 443 VSSYVMLS 450
           VS   +L+
Sbjct: 474 VSYIAVLT 481


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 241/414 (58%), Gaps = 2/414 (0%)

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+ +TF  V  +      +  G+Q+   A K+GL+SN+FV +A++ +Y     ++EA RV
Sbjct: 30  PNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRV 89

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+ + + ++ S+  MI G +       A ++F EM  R+VVSW  +I GY Q G  +EA+
Sbjct: 90  FDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEAL 149

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
           +LF EML+ G  PN  TL  A+ A AN+ AL  G+  H    K   K++  +  SL+  Y
Sbjct: 150 DLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMY 209

Query: 286 AKCGSMEDSLLVF--DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
           AKCG ++ +  VF  +   +  +  WNA+I GYA +G+ +EAI+ FE+M++  + PN VT
Sbjct: 210 AKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVT 269

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            + LL AC+H  LVE+G  YF           + EHY CMVDLL RSG  KEA+E ++++
Sbjct: 270 FVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNM 329

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P    W ALLG C+IH ++E G+   + I  LD + +  +V+L+N  S +G+WD   
Sbjct: 330 PMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAK 389

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +R++++  G  + PGCS IE+    H F+ GDR+H    ++Y  L   T +++
Sbjct: 390 AVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLK 443



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 29/208 (13%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S +     ++FDE+ + +VVS TTII  + +   ++EA+ LF  ML     P+EFT  S 
Sbjct: 111 SGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASA 170

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + +   L  L+ G+ +H +  K  ++ N  + +++LD+Y K   I+ A +VF D      
Sbjct: 171 LAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHD------ 224

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                           E  LKL        V  WNAMIGGY+  G+++EA++LF +M  E
Sbjct: 225 ----------------EYGLKL-------KVWPWNAMIGGYAMHGKSKEAIDLFEQMKVE 261

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSF 262
            + PN  T    + A ++   +  G+ +
Sbjct: 262 KVSPNKVTFVALLNACSHGKLVEEGRGY 289


>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 484

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 170/462 (36%), Positives = 260/462 (56%), Gaps = 9/462 (1%)

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP--SEFTFGSVIP-----SST 119
            +P  +VVS T+ I R A++   + A    S ML     P  ++ T  +V+      SS+
Sbjct: 25  RLPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSACAGDSSS 84

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           AL    L   LHA A K+    N+ + + +   Y+       A ++F+   + +VV+Y T
Sbjct: 85  ALAR-PLALSLHALAVKL-FPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVVTYNT 142

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           MI GL++      A ++F EMP  + VSW A+I G  + GR++EA++ F  MLR+G+ P+
Sbjct: 143 MITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPD 202

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           + TL  AI A A + ALG+G   H   V    + +V V NSLI  YA+CG ++ +  VF 
Sbjct: 203 YVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARCGQVDFARQVFG 262

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ +R +V+WN++I G+A NG+  +A+E FE MR  G +P+ VT  G+L AC+H GL ++
Sbjct: 263 RIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDE 322

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G  Y+   + E     + EHY C+VDLL R+GR  EA   +  +P  P      ALL GC
Sbjct: 323 GLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRVVESMPMRPNEVVLGALLAGC 382

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           ++H +V+L E   + +L  DP   S+YV+LSN  +  GKW     +R  MK +G+ + PG
Sbjct: 383 RMHGDVDLAEQLMQHLLEQDPGGDSNYVLLSNIYAAVGKWGGAGKVRSLMKSRGVKKRPG 442

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
            S +EI  +VH FV GDR+H    E++ VL   T ++   EL
Sbjct: 443 QSTVEIDGEVHEFVCGDRSHPQAREVFEVLGLLTHEMAGCEL 484



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 4/180 (2%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++  +VFDE+P  + VS T +I    K   ++EAI  F  ML   + P   T  + I + 
Sbjct: 154 AAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDYVTLVAAISAC 213

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             +  L LG  +H +     L+ NV V ++++D+Y +   ++ A +VF       VVS+ 
Sbjct: 214 AEVGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARCGQVDFARQVFGRIRKRTVVSWN 273

Query: 179 TMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           +MI G     ++ DA++ F+ M       + V++  ++   S  G  +E +  +  M  E
Sbjct: 274 SMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTE 333



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 43/240 (17%)

Query: 198 QEMPHRNVVSWNAMIGGYSQTG--RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
           + +P R+VVSW + I   ++ G  +   A    +        PN  TL   + A A  ++
Sbjct: 24  RRLPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSACAGDSS 83

Query: 256 LGMGK----SFHACAVKF------------------------------LGKLDVFVGNSL 281
             + +    S HA AVK                               +    V   N++
Sbjct: 84  SALARPLALSLHALAVKLFPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVVTYNTM 143

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I+   + G +  +  VFD++   + V+W A+I G  +NGR +EAI+ F  M  +G+ P+ 
Sbjct: 144 ITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDY 203

Query: 342 VTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           VTL+  + AC   G +  G   + +    +LE    +       ++D+ +R G+   A++
Sbjct: 204 VTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANS----LIDMYARCGQVDFARQ 259


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 251/460 (54%), Gaps = 22/460 (4%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           SCG    +  +  +VFDE P  ++VS   +I  + K    E+AI ++  M    ++P + 
Sbjct: 128 SCG----EMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDV 183

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T   ++ S   L DLN GK+ + +    GL+  + + +A++D++ K   I EA R+F++ 
Sbjct: 184 TMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNL 243

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
               +VS                  KLF +M  ++VV WNAMIGG  Q  R+++A+ LF 
Sbjct: 244 EKRTIVS------------------KLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQ 285

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           EM      P+  T+   + A + + AL +G   H    K    L+V +G SL+  YAKCG
Sbjct: 286 EMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCG 345

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           ++ ++L VF  +  RN +T+ A+I G A +G    AI +F  M   GI P+ +T +GLL 
Sbjct: 346 NISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLS 405

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           AC H G+++ G  YFSQ K       + +HY+ MVDLL R+G  +EA + +  +P +   
Sbjct: 406 ACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADA 465

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W ALL GC++H NV+LGE AA+++L LDP D   YV+L      A  W++    RR M
Sbjct: 466 AVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMM 525

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            E+G+ ++PGCS IE+   V  F+  D++   +++IY  L
Sbjct: 526 NERGVEKIPGCSSIEVNGIVSEFIVRDKSRPESEKIYDCL 565



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 143/307 (46%), Gaps = 19/307 (6%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P   S     C L +       +K+ + + + N  SWN  I G+S++   ++AV  + +
Sbjct: 9   DPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQ 68

Query: 231 MLREGLV---PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           MLR G     P+H T P      A++    +G        K   +L   V N+ I  +A 
Sbjct: 69  MLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFAS 128

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG ME++  VFD+   R++V+WN +I GY + G GE+AIE ++ M   G++P+ VT++GL
Sbjct: 129 CGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGL 188

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF-------- 399
           + +C   G + +G  ++   K     M  P   A M D+ S+ G   EA+          
Sbjct: 189 VSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALM-DMFSKCGDIHEARRIFDNLEKRT 247

Query: 400 ----LYDLPFDPGIGFWKALLGGC--QIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
               L+D   +  +  W A++GG      S   L  F   +    DP++++    LS A 
Sbjct: 248 IVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLS-AC 306

Query: 454 SVAGKWD 460
           S  G  D
Sbjct: 307 SQLGALD 313



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 173/392 (44%), Gaps = 57/392 (14%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML---LLNIRPSEF 109
           SES   +   ++   + + N  S    I  F++  + ++A+  + +ML       RP  F
Sbjct: 23  SESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHF 82

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T+  +      L   +LG  +     K+ L+    V +A + ++     +E A +VF+++
Sbjct: 83  TYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDES 142

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              ++VS+                               N +I GY + G  E+A+ ++ 
Sbjct: 143 PVRDLVSW-------------------------------NCLINGYKKIGEGEKAIEVYK 171

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKC 288
            M  EG+ P+  T+   + + A +  L  GK F+   VK  G ++ + + N+L+  ++KC
Sbjct: 172 VMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYE-YVKANGLRMTIPLANALMDMFSKC 230

Query: 289 GSMEDSLLVFDKLTERNIVT-------------WNAVICGYAQNGRGEEAIEFFERMRIN 335
           G + ++  +FD L +R IV+             WNA+I G  Q  R ++A+  F+ M+ +
Sbjct: 231 GDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTS 290

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
              P+ +T++  L AC+  G ++ G   + Y  +  L     L       +VD+ ++ G 
Sbjct: 291 NTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLS----LNVALGTSLVDMYAKCGN 346

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
             EA    + +     + +  A++GG  +H +
Sbjct: 347 ISEALCVFHGIQTRNSLTY-TAIIGGLALHGD 377


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 262/457 (57%), Gaps = 1/457 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +  + P  +V+S T++I  +++ +   EA+  F  ML   I P E T  +V+ +   L+D
Sbjct: 195 LLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKD 254

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSYTTMIC 182
           L LG+ LH    + G+ ++  +  A++D+Y K      A +VF+     P   S+  +I 
Sbjct: 255 LELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIID 314

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G  K    + A  LF EM  R+++++N+M+ GY  +G+  EA+ LF+ M R  L  ++ T
Sbjct: 315 GYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFT 374

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++ AL  G++ HAC  + L + D+++G +L+  Y KCG ++++ +VF ++ 
Sbjct: 375 VVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMG 434

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +R++ TW A+I G A NG G+ A+E F +MR +G +PN V+ + +L AC+H+ L+ +G  
Sbjct: 435 KRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRL 494

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF + ++      + EHY CM+DLL RSG   EA + +  +P  P    W ++L  C++H
Sbjct: 495 YFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVH 554

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            +++L + AA  +L L+P++   YV L N    + +W+N S IR  M+E+ + +  G S 
Sbjct: 555 KHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSS 614

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           I +  +VH FV  D++H    EI A+L   + +++  
Sbjct: 615 ITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSL 651



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 185/428 (43%), Gaps = 44/428 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL- 121
            +FD +P    +  T +               LF RM    +RP  FTF  +   S++  
Sbjct: 58  HLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSS 117

Query: 122 --EDLNLGKQLHAWATKVGLQSNV-FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
               L L   LHA   +  L S   FV ++++ +YI+L    +A R F++ H  + V++T
Sbjct: 118 RPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWT 177

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
            +I GL K     D   L  + P R+V+SW ++I  YS+  R  EAV  F  ML  G+ P
Sbjct: 178 MLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAP 237

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  T+   + A A +  L +G+S H    +        +  +LI  YAKCG    +  VF
Sbjct: 238 DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVF 297

Query: 299 DKLTE--------------------------------RNIVTWNAVICGYAQNGRGEEAI 326
           D L                                  R+I+T+N+++ GY  +G+  EA+
Sbjct: 298 DALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREAL 357

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMV 384
             F  MR + +R +  T++ LL AC   G +++G +    A +E   +++ + Y    ++
Sbjct: 358 LLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL--HACIEQ-RLVEADIYLGTALL 414

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPED 442
           D+  + GR  EA   ++       +  W A++ G   +      L  F   R     P  
Sbjct: 415 DMYMKCGRVDEAT-IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNS 473

Query: 443 VSSYVMLS 450
           VS   +L+
Sbjct: 474 VSYIAVLT 481


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/467 (33%), Positives = 265/467 (56%), Gaps = 10/467 (2%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIP 116
               H +FDE+P  + VS  +I+  + +     + + +F  M   + ++P  F + +++ 
Sbjct: 53  LQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLK 112

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +  +L  L LGKQ+HA         +  V S+++D+Y K      A  VF+       VS
Sbjct: 113 ACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVS 172

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +T M+ G  +    ++A++LF   P RN+ SW A+I G  Q+G   +   +FIEM REG+
Sbjct: 173 WTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGV 232

Query: 237 -VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
            + +   L   + A AN+A LG+GK  H   +    +  +F+ N+L+  YAKC  +  + 
Sbjct: 233 DIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAAR 292

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VF+++  R++V+W ++I G AQ+GR +EA++ +++M +  I+PN VT +GL++AC+H G
Sbjct: 293 NVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAG 352

Query: 356 LVEKGYSYFSQAKLED----PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           LV KG   F +A +ED    P +   + + C +DLLSRSG   EA++ +  +P  P    
Sbjct: 353 LVSKGRKLF-KAMIEDYRISPSL---QLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPT 408

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ALL  C+ H N E+G   A R+L+L+  + S+YV+LSN  + AGKW+ +S +R+ M +
Sbjct: 409 WAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTD 468

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
             + R PG S I++  +  VF  G+  H M DEI+ +L+    ++R+
Sbjct: 469 MEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDAEMRK 515



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 41/236 (17%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
            K++HA   K GL     + + +LD Y K                          C LL 
Sbjct: 21  AKKIHAQIVKSGLNQCQPLPNTLLDAYGK--------------------------CNLL- 53

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPC 245
               +DA  LF EMP R+ VSW +++  Y+Q     + +++F  M   + L P+H     
Sbjct: 54  ----QDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYAT 109

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + A A++ +L +GK  HA  V      D  V +SL+  YAKCG    +  VFD +  + 
Sbjct: 110 LLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKT 169

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            V+W A++ GYA++G  +EA+E F R  +  +           W    +GLV+ GY
Sbjct: 170 SVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYS---------WTALISGLVQSGY 216



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 91/203 (44%), Gaps = 12/203 (5%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGI 337
           N+L+  Y KC  ++D+  +FD++ +R+ V+W +++  Y Q     + +  F  M   + +
Sbjct: 41  NTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL 100

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +P+      LL AC     +  G   ++ F  +   D  ++K    + +VD+ ++ G   
Sbjct: 101 QPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVK----SSLVDMYAKCGLPS 156

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
            A+     +     +  W A+L G   ++   L + A    L     ++ S+  L + L 
Sbjct: 157 IARSVFDSILVKTSVS-WTAMLSG---YARSGLKDEAMELFLRTPVRNLYSWTALISGLV 212

Query: 455 VAGKWDNVSNIRREMKEKGMTRV 477
            +G   +   +  EM+ +G+  V
Sbjct: 213 QSGYCIDGCYMFIEMRREGVDIV 235


>gi|224107421|ref|XP_002314475.1| predicted protein [Populus trichocarpa]
 gi|222863515|gb|EEF00646.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/483 (32%), Positives = 260/483 (53%), Gaps = 10/483 (2%)

Query: 44  IRTDSVSCGS------ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97
           I ++ VS GS       S +F +   VF  +P    V+   +I    +    E  + +F 
Sbjct: 2   IDSNEVSWGSLLFAYTNSGQFDAAASVFKSMPKKVDVAWNIMISGLGQYGEIELCLEMFK 61

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
            M      P ++T+ ++I + T   +L  G  +HA   K G  S +   ++IL  Y KL 
Sbjct: 62  EMRESLCEPDQWTYSALISAFTESLELVYGCMMHAVVIKTGWSSAMEANNSILSFYAKLG 121

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
           S+ +A +VFE       VS+  +I   +K     +A   FQ MP +NVVSW +MI GY++
Sbjct: 122 SLNDAVKVFESMGTLTQVSWNAIIDVFMKAGDTSEAFLSFQRMPDKNVVSWTSMITGYAR 181

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
            G  EEA++ F+ M+R  L+P+  T    + A +++A LG G+  H C ++      V++
Sbjct: 182 NGYGEEALDFFVGMIRNCLLPDDFTFGAVLHACSSLAILGHGRMVHGCVIRHGFHAHVYI 241

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           GN L++ YAKCG +E S + F+ + E+++V++N+++  +  +G+G +A++ +E M  +GI
Sbjct: 242 GNGLVNMYAKCGDLEGSNVAFNDIYEKDLVSFNSMLFAFGLHGKGTQALQLYEDMVASGI 301

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           +P+ VT +GL   C+H+GL++KG  +F   +L        +H ACMVD+L R G   EAK
Sbjct: 302 KPDKVTFIGLFLTCSHSGLIDKGLEFFESMRLVHGLSFNMDHVACMVDMLGRGGYLAEAK 361

Query: 398 EFL--YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP-EDVSSYVMLSNALS 454
           E    +    D      + LLG C  H  VE G      +  L+P ++ S YV+ SN   
Sbjct: 362 ELAIKHSKTGDVKTSSCEPLLGACSTHGEVETGTNVGETLKDLEPHKETSYYVLRSNLYC 421

Query: 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTE 514
            +G+W     +R+EM ++G+ ++PGCSWIE+ +KV  FV G     M +E+Y  L     
Sbjct: 422 ASGRWKEAEMVRKEMVDEGLKKIPGCSWIEVGNKVTAFVAGQSQPCM-EELYTTLHFLEL 480

Query: 515 QIR 517
           ++R
Sbjct: 481 EMR 483


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/469 (35%), Positives = 252/469 (53%), Gaps = 37/469 (7%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           SCG       + H +F  V    V++   +I  + K   ++E + +F  ML +     E 
Sbjct: 218 SCGD----VVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEV 273

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T  SV  +   L D NLG+ +  +A + G+  +  + +A++D+Y K              
Sbjct: 274 TLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAK-------------- 319

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       CG L + R     +LF  M  R+VV+W+AMI GY+Q+ R  EA+ +F 
Sbjct: 320 ------------CGELDKAR-----RLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFN 362

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           EM    + PN  T+   + A A + AL  GK  H+   +    L V +G +L+ FYAKCG
Sbjct: 363 EMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCG 422

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++D++  F+ +  RN  TW A+I G A NGR  EA+E F  M    I P  VT +G+L 
Sbjct: 423 CIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLL 482

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           AC+H  LVE+G  +F+ +  +D G+  + EHY CMVDLL R+G   EA +F+ ++P +P 
Sbjct: 483 ACSHGCLVEEGRRHFT-SMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPN 541

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
              W+ALL  C +H NVE+GE A ++I+ LDP    +Y++LSN  +  G+W N + +R+E
Sbjct: 542 AVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKE 601

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           MKEKG+ ++PGCS IE++  +  F   D  H    EIY  +    E I+
Sbjct: 602 MKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIK 650



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 154/306 (50%), Gaps = 16/306 (5%)

Query: 193 ALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIA 249
           A++LF+  PH  R+  S+N +I  + + G  E+A++LF+EML +  V P+  T+   + +
Sbjct: 121 AIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKS 180

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            + +  L +G+   A A K    +D FV NSLI  YA CG +  + ++F  +  + ++ W
Sbjct: 181 CSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAW 240

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           NA+I GY +NG  +E +E F+ M       + VTLL +  AC   G    G      A  
Sbjct: 241 NAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYA-- 298

Query: 370 EDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE-- 426
           E+ GML+  + A  +VD+ ++ G   +A+  L+D      +  W A++ G          
Sbjct: 299 EEKGMLRSRNLATALVDMYAKCGELDKARR-LFDRMHSRDVVAWSAMISGYTQSDRCREA 357

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREMKEKGMTRVPGCSW 482
           L  F   +   ++P DV+   +LS    +     GKW + S IRR  K+  +T + G + 
Sbjct: 358 LAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVH-SYIRR--KDLPLTVILGTAL 414

Query: 483 IEIKSK 488
           ++  +K
Sbjct: 415 VDFYAK 420


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 250/448 (55%), Gaps = 33/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +   +++    +I   +    ++EA  +F  +    +  +  T  +V+ S+ +LE
Sbjct: 359 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLE 418

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             +  +Q+HA A K+G   +  V + ++D Y K S + +A RVF                
Sbjct: 419 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVF---------------- 462

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                          +E    ++++  +MI   SQ    E A+ LF+EMLR+GL P+   
Sbjct: 463 ---------------EECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 507

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+++A   GK  HA  +K     D F GN+L+  YAKCGS+ED+ L F  L 
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP 567

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER +V+W+A+I G AQ+G G+ A+E F RM   GI PN +T+  +L ACNH GLV++   
Sbjct: 568 ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKR 627

Query: 363 YFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF+  K E  G+ +  EHY+CM+DLL R+G+  +A E +  +PF      W ALLG  ++
Sbjct: 628 YFNSMK-EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRV 686

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + ELG+ AA ++  L+PE   ++V+L+N  + +G W+ V+ +R+ MK+  + + P  S
Sbjct: 687 HKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMS 746

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           W+E+K KVH F+ GD++H M  EIY+ L
Sbjct: 747 WVEVKDKVHTFIVGDKSHPMTKEIYSKL 774



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 146/287 (50%), Gaps = 32/287 (11%)

Query: 63  QVFDEV-PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VFDE   + N VS   ++  + K     +AI +F  M+   I+P+EF F  V+ + T  
Sbjct: 156 RVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 215

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            +++ G+Q+HA   ++G + +VF  +A++D+Y+K+  ++ A+ +FE              
Sbjct: 216 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFE-------------- 261

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                            +MP  +VVSWNA+I G    G +  A+ L ++M   GLVPN  
Sbjct: 262 -----------------KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVF 304

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
            L   + A A   A  +G+  H   +K     D ++G  L+  YAK   ++D++ VFD +
Sbjct: 305 MLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM 364

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           + R+++ WNA+I G +  GR +EA   F  +R  G+  N  TL  +L
Sbjct: 365 SHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 411



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 166/361 (45%), Gaps = 33/361 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++PD +VVS   +I       H   AI L  +M    + P+ F   S++ +      
Sbjct: 259 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGA 318

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +LG+Q+H +  K    S+ ++G  ++D+Y K                            
Sbjct: 319 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAK---------------------------- 350

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                  +DA+K+F  M HR+++ WNA+I G S  GR++EA ++F  + +EGL  N +TL
Sbjct: 351 ---NHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 407

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + A++ A    +  HA A K     D  V N LI  Y KC  + D++ VF++ + 
Sbjct: 408 AAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSS 467

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            +I+   ++I   +Q   GE AI+ F  M   G+ P+   L  LL AC      E+G   
Sbjct: 468 GDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQV 527

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            +   ++   M        +V   ++ G  ++A+     LP + G+  W A++GG   H 
Sbjct: 528 HAHL-IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHG 585

Query: 424 N 424
           +
Sbjct: 586 H 586



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 175/380 (46%), Gaps = 41/380 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           ++R   +S  S+  +     +VFDE+PD   VS ++++  ++       AI  F  M   
Sbjct: 38  SLRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAE 97

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            +  +EF    V+     + D  LG Q+HA A   G  S+VFV +A++ +Y     +++A
Sbjct: 98  GVCCNEFALPVVL---KCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDA 154

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            RVF++  +                               RN VSWN ++  Y +  +  
Sbjct: 155 RRVFDEAGS------------------------------ERNAVSWNGLMSAYVKNDQCG 184

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A+ +F EM+  G+ P      C + A      +  G+  HA  V+   + DVF  N+L+
Sbjct: 185 DAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALV 244

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y K G ++ + ++F+K+ + ++V+WNA+I G   NG    AIE   +M+ +G+ PN  
Sbjct: 245 DMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVF 304

Query: 343 TLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
            L  +L AC   G  + G   + +  +A  +    +       +VD+ +++    +A + 
Sbjct: 305 MLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIG----VGLVDMYAKNHFLDDAMK- 359

Query: 400 LYDLPFDPGIGFWKALLGGC 419
           ++D      +  W AL+ GC
Sbjct: 360 VFDWMSHRDLILWNALISGC 379



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 12/241 (4%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A ++F E+P    VSW++++  YS  G    A+  F  M  EG+  N   LP  +    +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-TERNIVTWNA 311
                +G   HA A+      DVFV N+L++ Y   G M+D+  VFD+  +ERN V+WN 
Sbjct: 116 AQ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNG 172

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           ++  Y +N +  +AI+ F  M  +GI+P       ++ AC  +  ++ G      A +  
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV--HAMVVR 230

Query: 372 PGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVE 426
            G  K    A  +VD+  + GR   A      +P D  +  W AL+ GC +    H  +E
Sbjct: 231 MGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIE 289

Query: 427 L 427
           L
Sbjct: 290 L 290



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 35/259 (13%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            S   +VF+E    ++++ T++I   ++  H E AI LF  ML   + P  F   S++ +
Sbjct: 455 LSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 514

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             +L     GKQ+HA   K    S+ F G+A++  Y K  SIE+A   F       VVS+
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 574

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           + MI GL                               +Q G  + A+ LF  M+ EG+ 
Sbjct: 575 SAMIGGL-------------------------------AQHGHGKRALELFGRMVDEGIN 603

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN--SLISFYAKCGSMEDSL 295
           PNH T+  +++ A N A L      +  ++K +  +D    +   +I    + G ++D++
Sbjct: 604 PNHITMT-SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 296 LVFDKLT-ERNIVTWNAVI 313
            + + +  + N   W A++
Sbjct: 663 ELVNSMPFQANASVWGALL 681



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 251 ANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A   AL  G   HA  +K  FL  L     N LISFY+KC     +  VFD++ +   V+
Sbjct: 15  AAAQALLPGAHLHANLLKSGFLASLR----NHLISFYSKCRRPCCARRVFDEIPDPCHVS 70

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           W++++  Y+ NG    AI+ F  MR  G+  N   L
Sbjct: 71  WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFAL 106


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 157/448 (35%), Positives = 252/448 (56%), Gaps = 33/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF+ +P  +++    +I   +    + E++ LF RM       +  T  +V+ S+ +LE
Sbjct: 361 KVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLE 420

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            ++   Q+HA A K+G  S+  V + ++D Y K + +  A +VFE               
Sbjct: 421 AISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFE--------------- 465

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                           E    N++++ +MI   SQ    E+A+ LF+EMLR+GL P+   
Sbjct: 466 ----------------EHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFV 509

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+++A   GK  HA  +K     DVF GN+L+  YAKCGS+ED+ L F  L 
Sbjct: 510 LSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLP 569

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ++ +V+W+A+I G AQ+G G+ A++ F RM    I PN +TL  +L ACNH GLV++   
Sbjct: 570 DKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKG 629

Query: 363 YFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YFS  K E  G+ +  EHY+CM+DLL R+G+  +A E +  +PF+     W ALL   ++
Sbjct: 630 YFSSMK-EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRV 688

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + ELG+ AA ++  L+PE   ++V+L+N  + AG WD V+ +R+ MK+  + + P  S
Sbjct: 689 HRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMS 748

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           W+E+K +VH F+ GD++H    +IYA L
Sbjct: 749 WVELKDRVHTFIVGDKSHPRARDIYAKL 776



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 165/366 (45%), Gaps = 43/366 (11%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  +VFDE PD   VS ++++  ++      EA+  F  M    +R +EF    V+  + 
Sbjct: 55  SARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAP 114

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              D  LG Q+HA A   GL  ++FV +A++ +Y     ++EA RVF++           
Sbjct: 115 ---DAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARD------- 164

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                                  RN VSWN M+  + +  R  +AV LF EM+  G+ PN
Sbjct: 165 -----------------------RNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPN 201

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
                C + A      L  G+  HA  V+     DVF  N+L+  Y+K G +  + LVF 
Sbjct: 202 EFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFG 261

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL-----WACNHT 354
           K+ + ++V+WNA I G   +G  + A+E   +M+ +G+ PN  TL  +L           
Sbjct: 262 KVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAF 321

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            L  + + +  +A  +    +       +VD+ ++ G   +A++    +P    +  W A
Sbjct: 322 ALGRQIHGFMIKACADSDDYIG----VALVDMYAKYGLLDDARKVFEWIP-RKDLLLWNA 376

Query: 415 LLGGCQ 420
           L+ GC 
Sbjct: 377 LISGCS 382



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/423 (26%), Positives = 185/423 (43%), Gaps = 43/423 (10%)

Query: 57  KFSSVHQ---VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           K   +H    VF +VP  +VVS    I       H + A+ L  +M    + P+ FT  S
Sbjct: 249 KLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSS 308

Query: 114 VIPSSTALEDLNLG--KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
           ++ +            +Q+H +  K    S+ ++G A++D+Y K                
Sbjct: 309 ILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKY--------------- 353

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                      GLL     +DA K+F+ +P ++++ WNA+I G S  G + E+++LF  M
Sbjct: 354 -----------GLL-----DDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRM 397

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            +EG   N +TL   + + A++ A+      HA A K     D  V N LI  Y KC  +
Sbjct: 398 RKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCL 457

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             +  VF++ +  NI+ + ++I   +Q   GE+AI+ F  M   G+ P+   L  LL AC
Sbjct: 458 RYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNAC 517

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
                 E+G    +   ++   M        +V   ++ G  ++A      LP D G+  
Sbjct: 518 ASLSAYEQGKQVHAHL-IKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLP-DKGVVS 575

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV---AGKWDNVSNIRRE 468
           W A++GG   H + +      RR+  +D     +++ L++ L     AG  D        
Sbjct: 576 WSAMIGGLAQHGHGKRALDVFRRM--VDERIAPNHITLTSVLCACNHAGLVDEAKGYFSS 633

Query: 469 MKE 471
           MKE
Sbjct: 634 MKE 636



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 8/234 (3%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A ++F E P    VSW++++  YS      EA+  F  M   G+  N   LP  +  A +
Sbjct: 56  ARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPD 115

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT-ERNIVTWNA 311
               G+G   HA AV      D+FV N+L++ Y   G ++++  VFD+   +RN V+WN 
Sbjct: 116 A---GLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNG 172

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           ++  + +N R  +A+E F  M  +G+RPN      ++ AC  +  +E G      A +  
Sbjct: 173 MMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKV--HAMVVR 230

Query: 372 PGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            G  K    A  +VD+ S+ G    A      +P    +  W A + GC +H +
Sbjct: 231 TGYDKDVFTANALVDMYSKLGDIHMAALVFGKVP-KTDVVSWNAFISGCVLHGH 283



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           A   +L +G   HA  +K  G L  F  N L+SFY+KC     +  VFD+  +   V+W+
Sbjct: 15  AATQSLFLGAHIHAHLLKS-GLLHAF-RNHLLSFYSKCRLPGSARRVFDETPDPCHVSWS 72

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +++  Y+ N    EA+  F  MR  G+R N   L  +L      GL
Sbjct: 73  SLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL 118


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 247/460 (53%), Gaps = 33/460 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           +     VF  +   +VVS TTII         ++A+  +  M +    P E T  SV+ +
Sbjct: 287 WKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSA 346

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             +L  L++G +LH  A + G    V V ++++D+Y K                      
Sbjct: 347 CASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKC--------------------- 385

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                     +R E AL++F ++P ++V+SW ++I G     R  EA+  F +M+ +   
Sbjct: 386 ----------KRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-K 434

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  TL  A+ A A + AL  GK  HA A+K     D F+ N+++  Y +CG M  +L  
Sbjct: 435 PNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQ 494

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ L E+++  WN ++ GYAQ G+G   +E F+RM  + I P+ VT + LL AC+ +G+V
Sbjct: 495 FN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMV 553

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
            +G  YF + K+        +HYAC+VDLL R+G+  EA EF+  +P  P    W ALL 
Sbjct: 554 TEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLN 613

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C+IH +V LGE AA+ I   D E +  Y++L N  + +GKWD V+ +RR MKE+G+   
Sbjct: 614 ACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVD 673

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           PGCSW+E+K KVH F++GD  H    EI  VL    E+++
Sbjct: 674 PGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMK 713



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 194/421 (46%), Gaps = 50/421 (11%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  V CG       S   +FD++P  + +S   +I  + +     E + LF RM  L
Sbjct: 175 ALITMYVKCGD----VVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMREL 230

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           +I P   T  SVI +   L D  LG QLH++  +     N+ V ++++ +Y+ +   +EA
Sbjct: 231 SIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEA 290

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             V                               F  M  R+VVSW  +I G       +
Sbjct: 291 ESV-------------------------------FSGMECRDVVSWTTIISGCVDNLLPD 319

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A+  +  M   G +P+  T+   + A A++  L MG   H  A +    L V V NSLI
Sbjct: 320 KALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLI 379

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y+KC  +E +L +F ++ ++++++W +VI G   N R  EA+ FF +M +   +PN V
Sbjct: 380 DMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSV 438

Query: 343 TLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA-KE 398
           TL+  L AC   G +  G   +++  +A +   G L       ++DL  R GR + A  +
Sbjct: 439 TLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNA----ILDLYVRCGRMRTALNQ 494

Query: 399 FLYDLPFDPGIGFWKALLGG-CQIHSNVELGEFAARRILA-LDPEDVSSYVMLSNALSVA 456
           F  +   +  +G W  LL G  Q      + E   R + + ++P+DV +++ L  A S +
Sbjct: 495 FNLN---EKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDV-TFISLLCACSRS 550

Query: 457 G 457
           G
Sbjct: 551 G 551



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 137/276 (49%), Gaps = 13/276 (4%)

Query: 189 RFED---ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           RF D   A  +F  M  R++ SWN ++GGY++ G  +EA+ L+  +L  G+ P+  T P 
Sbjct: 81  RFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPS 140

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + + A    L  G+  HA  V+F   +DV V N+LI+ Y KCG +  + ++FDK+  R+
Sbjct: 141 VLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRD 200

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEKGYS 362
            ++WNA+I GY +N    E +E F RMR   I P+ +T+  ++ AC   G   L  + +S
Sbjct: 201 RISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHS 260

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC--Q 420
           Y  +   +         Y  ++ +    G +KEA+     +     +  W  ++ GC   
Sbjct: 261 YVVRTAYDG----NISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVS-WTTIISGCVDN 315

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
           +  +  L  +    I    P++V+   +LS   S+ 
Sbjct: 316 LLPDKALETYKTMEITGTMPDEVTIASVLSACASLG 351



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 154/393 (39%), Gaps = 95/393 (24%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+  +     ++F ++PD +V+S T++I      +   EA+  F +M+L + +P+  T  
Sbjct: 383 SKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLI 441

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S + +   +  L  GK++HA A K G+  + F+ +AILDLY++                 
Sbjct: 442 SALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVR----------------- 484

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                    CG     R   AL  F  +  ++V +WN ++ GY+Q G+    + LF  M+
Sbjct: 485 ---------CG-----RMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMV 529

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
              + P+  T                                     SL+   ++ G + 
Sbjct: 530 ESEINPDDVTFI-----------------------------------SLLCACSRSGMVT 554

Query: 293 DSLLVFDKL-----TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           + L  F ++        N+  +  V+    + G+  EA EF ERM    I+P+      L
Sbjct: 555 EGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMP---IKPDPAIWGAL 611

Query: 348 LWAC---NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-- 402
           L AC    H  L E    +  +   E  G     +Y  + +L + SG++ E  +      
Sbjct: 612 LNACRIHRHVLLGELAAQHIFKQDAESIG-----YYILLCNLYADSGKWDEVAKVRRTMK 666

Query: 403 ---LPFDPGI------GFWKALLGGCQIHSNVE 426
              L  DPG       G   A L G   H  ++
Sbjct: 667 EEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQ 699



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 8/173 (4%)

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           L V +GN+L+S + + G + ++  VF ++ ER++ +WN ++ GY + G  +EA+  + R+
Sbjct: 67  LSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRI 126

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
              GIRP+  T   +L +C     + +G    +     D  M   +    ++ +  + G 
Sbjct: 127 LWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDM-DVDVVNALITMYVKCGD 185

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE----FAARRILALDPE 441
              A+     +P    I  W A++ G     N E  E    F   R L++DP+
Sbjct: 186 VVSARMLFDKMPTRDRIS-WNAMISG--YFENDECLEGLELFFRMRELSIDPD 235


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/494 (33%), Positives = 263/494 (53%), Gaps = 44/494 (8%)

Query: 37  QKLETPAIRT---DSVSCG--------SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK 85
           ++L + AIR+   D V C         S         +VFD + D +V+S T +I  + K
Sbjct: 289 KQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMK 348

Query: 86  QHHY-EEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNV 143
             +   EAI LFS M+   ++ P+ FTF S   +   L D  +GKQ+   A K GL SN 
Sbjct: 349 NCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNS 408

Query: 144 FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
            V ++++ +++K                                +R EDA + F+ +  +
Sbjct: 409 SVANSVISMFVK-------------------------------SDRMEDAQRAFESLSEK 437

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
           N+VS+N  + G  +    E+A  L  E+    L  +  T    +   AN+ ++  G+  H
Sbjct: 438 NLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIH 497

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGE 323
           +  VK     +  V N+LIS Y+KCGS++ +  VF+ +  RN+++W ++I G+A++G   
Sbjct: 498 SQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAI 557

Query: 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383
             +E F +M   G++PN VT + +L AC+H GLV +G+ +F+    +     K EHYACM
Sbjct: 558 RVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACM 617

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443
           VDLL R+G   +A EF+  +PF   +  W+  LG C++HSN ELG+ AAR+IL LDP + 
Sbjct: 618 VDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEP 677

Query: 444 SSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMND 503
           ++Y+ LSN  + AGKW+  + +RR+MKE+ + +  GCSWIE+  K+H F  GD  H    
Sbjct: 678 AAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAH 737

Query: 504 EIYAVLRSCTEQIR 517
           +IY  L     +I+
Sbjct: 738 QIYDELDRLITEIK 751



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 145/320 (45%), Gaps = 38/320 (11%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S K   V +        +VVS + ++  +       +AI +F   L L + P+++ + +
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 114 VIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           VI + +  + + +G+    +  K G  +S+V VG +++D+++K                 
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK----------------- 214

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                            FE+A K+F +M   NVV+W  MI    Q G   EA+  F++M+
Sbjct: 215 -------------GENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMV 261

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC---G 289
             G   +  TL     A A +  L +GK  H+ A++  G +D  V  SL+  YAKC   G
Sbjct: 262 LSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIR-SGLVDD-VECSLVDMYAKCSADG 319

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQN-GRGEEAIEFFERMRING-IRPNGVTLLGL 347
           S++D   VFD++ + ++++W A+I GY +N     EAI  F  M   G + PN  T    
Sbjct: 320 SVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSA 379

Query: 348 LWACNHTGLVEKGYSYFSQA 367
             AC +      G     QA
Sbjct: 380 FKACGNLSDPRVGKQVLGQA 399



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 156/335 (46%), Gaps = 52/335 (15%)

Query: 104 IRPSE-FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           IRP +  TF S++ S     D  LGK +HA   +  ++ +  + ++++ LY K     +A
Sbjct: 57  IRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKA 116

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VFE           TM        RF            R+VVSW+AM+  Y   GR  
Sbjct: 117 EDVFE-----------TM-------RRFG----------KRDVVSWSAMMACYGNNGREL 148

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-----DVFV 277
           +A+ +F+E L  GLVPN       I A +N   +G+G+      + FL K      DV V
Sbjct: 149 DAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGR----VTLGFLMKTGHFESDVCV 204

Query: 278 GNSLISFYAKC-GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           G SLI  + K   S E++  VFDK++E N+VTW  +I    Q G   EAI FF  M ++G
Sbjct: 205 GCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSG 264

Query: 337 IRPNGVTLLGLLWAC---NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR---S 390
              +  TL  +  AC    +  L ++ +S+  ++ L D      +    +VD+ ++    
Sbjct: 265 FESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVD------DVECSLVDMYAKCSAD 318

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
           G   + ++ ++D   D  +  W AL+ G   + N+
Sbjct: 319 GSVDDCRK-VFDRMEDHSVMSWTALITGYMKNCNL 352



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 4/141 (2%)

Query: 224 AVNLFIEMLREGLVPNHS-TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           AV+    M R+G+ P  S T    + +        +GK  HA  ++F  + D  + NSLI
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 283 SFYAKCGS---MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           S Y+K G     ED      +  +R++V+W+A++  Y  NGR  +AI+ F      G+ P
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 340 NGVTLLGLLWACNHTGLVEKG 360
           N      ++ AC+++  V  G
Sbjct: 165 NDYCYTAVIRACSNSDFVGVG 185


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 257/445 (57%), Gaps = 33/445 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++   +P+ +VVS T +I  + +   + EA+ LF  M    I+     F S I +   + 
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  G+Q+HA +   G  +++ + +A++ LY +                          C
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYAR--------------------------C 612

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     R ++A   F+++  +N +SWN+++ G +Q+G  EEA+ +F+ MLR     N  T
Sbjct: 613 G-----RIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFT 667

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              AI AAA++A +  G+  H+  +K     +  V NSLIS YAK GS+ D+   F+ ++
Sbjct: 668 YGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMS 727

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ERN+++WNA+I GY+Q+G G EA+  FE M++ GI PN VT +G+L AC+H GLV++G  
Sbjct: 728 ERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLD 787

Query: 363 YF-SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF S  K+ D  + K EHY C+VDLL R+G+   A E++ ++P       W+ LL  C I
Sbjct: 788 YFESMFKIHDL-VPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVI 846

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N+E+GE AA  +L L+PED ++YV++SN  +V+ +W +    R+ MK+ G+ + PG S
Sbjct: 847 HKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRS 906

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIY 506
           WIE+K+ VH F  GD+ H + ++IY
Sbjct: 907 WIEVKNAVHAFYAGDKLHPLTNQIY 931



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 162/335 (48%), Gaps = 52/335 (15%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFS---- 59
           LL  C S  +L+K  +LHS A                   +  D +  GS  D +S    
Sbjct: 368 LLSACASVGALHKGMQLHSHAIK---------------AGMSADIILEGSLLDLYSKCAD 412

Query: 60  --SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
             + H+ F      N+V    ++  + +  +  ++  +F +M +  + P++FT+ S++ +
Sbjct: 413 VETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRT 472

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T+L  L LG+Q+H    K G Q NV+V S ++D+Y K   +  A               
Sbjct: 473 CTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALA--------------- 517

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                           L++ + +P  +VVSW AMI GY Q     EA+ LF EM   G+ 
Sbjct: 518 ----------------LRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQ 561

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            ++     AI A A I AL  G+  HA +       D+ + N+LIS YA+CG ++++ L 
Sbjct: 562 FDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           F+K+ ++N ++WN+++ G AQ+G  EEA++ F RM
Sbjct: 622 FEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRM 656



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 173/370 (46%), Gaps = 33/370 (8%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  S S K  S  ++F  +   + VS  ++I    +Q   + A+ LF++M    ++P  
Sbjct: 303 VALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDC 362

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  S++ +  ++  L+ G QLH+ A K G+ +++ +  ++LDLY K + +E A + F  
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLX 422

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           T                                  N+V WN M+  Y Q     ++  +F
Sbjct: 423 TET-------------------------------ENIVLWNVMLVAYGQLDNLSDSFEIF 451

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            +M  EG++PN  T P  +    ++ AL +G+  H   +K   +L+V+V + LI  YAK 
Sbjct: 452 RQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKY 511

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +  +L +  +L E ++V+W A+I GY Q+    EA++ FE M   GI+ + +     +
Sbjct: 512 GQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAI 571

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            AC     + +G    +Q+     G     + A ++ L +R GR +EA    ++   D  
Sbjct: 572 SACAGIRALRQGQQIHAQSYAAGFGADLSINNA-LISLYARCGRIQEAY-LAFEKIGDKN 629

Query: 409 IGFWKALLGG 418
              W +L+ G
Sbjct: 630 NISWNSLVSG 639



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 180/407 (44%), Gaps = 42/407 (10%)

Query: 12  LSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDL 71
           ++ N + ++HS    Y  ++         +P +    +   S++    S  +VF+ +   
Sbjct: 174 IAFNYVKQVHSRTFYYGFDS---------SPLVANLLIDLYSKNGYIESAKKVFNCICMK 224

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++V+   +I   ++    EEAI LF  M    I P+ +   SV+ +ST ++   LG+QLH
Sbjct: 225 DIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLH 284

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
               K G  S  +V + ++ LY +   +  A R+F                         
Sbjct: 285 CLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFS------------------------ 320

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
                   M  R+ VS+N++I G  Q G ++ A+ LF +M R+ L P+  T+   + A A
Sbjct: 321 -------TMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACA 373

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           ++ AL  G   H+ A+K     D+ +  SL+  Y+KC  +E +   F      NIV WN 
Sbjct: 374 SVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNV 433

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           ++  Y Q     ++ E F +M++ G+ PN  T   +L  C   G +  G    +   ++ 
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHV-IKT 492

Query: 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              L     + ++D+ ++ G+   A   L  LP D  +  W A++ G
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS-WTAMIAG 538



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 161/358 (44%), Gaps = 40/358 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFDE  + +V S   +I  F  Q    +   LF RML   I P+ +TF  V+ +    +
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 123 -DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
              N  KQ+H+     G  S+  V + ++DLY K   IE A +VF      ++V++  MI
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            GL                               SQ G  EEA+ LF +M    + P   
Sbjct: 234 SGL-------------------------------SQNGLEEEAILLFCDMHASEIFPTPY 262

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
            L   + A+  I    +G+  H   +K+    + +V N L++ Y++   +  +  +F  +
Sbjct: 263 VLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTM 322

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG- 360
             R+ V++N++I G  Q G  + A+E F +M+ + ++P+ +T+  LL AC   G + KG 
Sbjct: 323 NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGM 382

Query: 361 --YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
             +S+  +A +    +L+      ++DL S+    + A +F      +  I  W  +L
Sbjct: 383 QLHSHAIKAGMSADIILE----GSLLDLYSKCADVETAHKFFLXTETE-NIVLWNVML 435



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 117/270 (43%), Gaps = 9/270 (3%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AA 251
           A+K+F E  +R+V SWN MI  +     N +   LF  ML EG+ PN  T    + A   
Sbjct: 112 AVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG 171

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
              A    K  H+    +       V N LI  Y+K G +E +  VF+ +  ++IVTW A
Sbjct: 172 GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVA 231

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371
           +I G +QNG  EEAI  F  M  + I P    L  +L A     L E G        L  
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHC---LVI 288

Query: 372 PGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC--QIHSNVEL 427
                 E Y C  +V L SRS +   A+     +    G+ +  +L+ G   Q  S+  L
Sbjct: 289 KWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSY-NSLISGLVQQGFSDRAL 347

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAG 457
             F   +   L P+ ++   +LS   SV  
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGA 377



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 5/210 (2%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           +I    +S  +   +    +  F+++ D N +S  +++   A+  ++EEA+ +F RML  
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
               + FT+GS I ++ +L ++  G+Q+H+   K G  S   V ++++ LY K  SI +A
Sbjct: 660 EAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDA 719

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQT 218
            R F D    NV+S+  MI G  +     +AL+LF+EM       N V++  ++   S  
Sbjct: 720 WREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHI 779

Query: 219 GRNEEAVNLFIEMLR-EGLVPNHSTLPCAI 247
           G  +E ++ F  M +   LVP      C +
Sbjct: 780 GLVKEGLDYFESMFKIHDLVPKSEHYVCVV 809



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           +SL+  Y + G    ++ VFD+ + R++ +WN +I  +       +    F RM   GI 
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 339 PNGVTLLGLLWAC-------NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           PNG T  G+L AC       N+   V     Y+            P     ++DL S++G
Sbjct: 157 PNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDS-------SPLVANLLIDLYSKNG 209

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGG 418
             + AK+ +++      I  W A++ G
Sbjct: 210 YIESAKK-VFNCICMKDIVTWVAMISG 235


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/516 (32%), Positives = 261/516 (50%), Gaps = 63/516 (12%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD +   +++   TII  + +     + I LF   L+    P  FT   VI     L  
Sbjct: 69  IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHE-LVHEYLPDNFTLPCVIKGCARLGV 127

Query: 124 LNLGKQLHAWATKVGLQSN----------------------VFVG---------SAILDL 152
           +  GKQ+H  A K+G  S+                      VF G         ++++D 
Sbjct: 128 VQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG 187

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           Y +   I+ A ++FE+    +  S+T ++ GL K  + E A KLF +MP RN+VSWNAMI
Sbjct: 188 YARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMI 247

Query: 213 GGYSQTGRNE-------------------------------EAVNLFIEMLREGLVPNHS 241
            GY ++G  +                               +AV +F  ML+ G  P+H+
Sbjct: 248 NGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHA 307

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL   + A + +A LG G+  H+   K   +LD  +G SLI  YAKCG +E +L VF  +
Sbjct: 308 TLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAI 367

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            ++ +  W A+I G   +G    A+  F  M   G++PN +  +G+L ACNH GLV+ G 
Sbjct: 368 QKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGR 427

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
            YF     E       EHY C+VD+L R+G  +EAK  + ++P  P    W +LLGG + 
Sbjct: 428 QYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRN 487

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H  +++GE+AA+R++ + PE +  Y++LSN  + +G W+ VS++R  M ++G  + PGCS
Sbjct: 488 HGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCS 547

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            +E K  +H F+ GD +H    EIYA +    E+++
Sbjct: 548 SVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLK 583



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 43/279 (15%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYI--KLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           +QLHA++ K  + ++ FV S +L LY   K++ +  A  +F+     +++ + T+I   +
Sbjct: 30  EQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYV 89

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           + +   D + LF E+ H                                  +P++ TLPC
Sbjct: 90  ENQFSHDGIVLFHELVHE--------------------------------YLPDNFTLPC 117

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            I   A +  +  GK  H  A+K     DVFV  SL++ Y+KCG ++ +  VFD + +++
Sbjct: 118 VIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKD 177

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           +V WN++I GYA+ G  + A++ FE M         V + GL    +  G VE     F 
Sbjct: 178 VVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGL----SKCGKVESARKLFD 233

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           Q    +        +  M++   +SG F  A E  Y +P
Sbjct: 234 QMPCRN-----LVSWNAMINGYMKSGDFDSALELFYQMP 267



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 147/368 (39%), Gaps = 87/368 (23%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S  F S  ++F ++P  ++V+   +I  +     + +A+ +F  ML L  RPS  T  S
Sbjct: 252 KSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVS 311

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ + + L  L  G+ +H++  K G + +  +G++++++Y K   IE A  VF       
Sbjct: 312 VLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKK 371

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V  +T +I GL                                  G    A+ LF+EM +
Sbjct: 372 VGHWTAIIVGL-------------------------------GIHGMANHALALFLEMCK 400

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            GL PN                          A+ F+G L+              G ++D
Sbjct: 401 TGLKPN--------------------------AIIFIGVLNAC---------NHAGLVDD 425

Query: 294 SLLVFDKL-----TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
               FD +      E  +  +  ++    + G  EEA    E M I+   PN V  + LL
Sbjct: 426 GRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPIS---PNKVIWMSLL 482

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV---DLLSRSGRFKE---AKEFLYD 402
               + G ++ G  Y +Q  +E    + PE   C +   ++ + SG +++    +E +Y 
Sbjct: 483 GGSRNHGKIDIG-EYAAQRVIE----VAPETIGCYILLSNMYAASGMWEKVSHVREMMYK 537

Query: 403 LPF--DPG 408
             F  DPG
Sbjct: 538 RGFRKDPG 545


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 256/453 (56%), Gaps = 11/453 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS    F    +VF+ + D N VS T +IG   +   + +++ LF++M    +   +F 
Sbjct: 308 CGS----FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 363

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             ++I       DL LG+QLH+   K G    + V ++++ LY K   ++ A  VF    
Sbjct: 364 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 423

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             ++VS+T+MI    +      A + F  M  RN ++WNAM+G Y Q G  E+ + ++  
Sbjct: 424 ERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSA 483

Query: 231 ML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           ML ++ + P+  T        A+I A  +G       VK    L+V V N+ I+ Y+KCG
Sbjct: 484 MLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCG 543

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            + ++  +FD L  +++V+WNA+I GY+Q+G G++A + F+ M   G +P+ ++ + +L 
Sbjct: 544 RISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLS 603

Query: 350 ACNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            C+H+GLV++G  YF   ++     PG+   EH++CMVDLL R+G   EAK+ +  +P  
Sbjct: 604 GCSHSGLVQEGKLYFDMMTRVHGISPGL---EHFSCMVDLLGRAGHLTEAKDLIDKMPMK 660

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W ALL  C+IH N EL E AA+ +  LD  D  SY++L+   S AGK D+ + +R
Sbjct: 661 PTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVR 720

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           + M++KG+ + PG SW+E+++KVHVF   D +H
Sbjct: 721 KLMRDKGIKKNPGYSWMEVENKVHVFKADDVSH 753



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 164/314 (52%), Gaps = 19/314 (6%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI---- 104
           +SCG+ SD    +     ++ + NV++   ++  +AKQ    +A  LF RM   ++    
Sbjct: 66  LSCGALSDARRLLRA---DIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWN 122

Query: 105 -------RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
                  RP+    GS + S  AL    L  QL     K     +  V +A++D++++  
Sbjct: 123 TLMSDTSRPA----GSWM-SCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 177

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
            ++ A+R+F     P +    +M+ G  K    + A++ F++M  R+VVSWN MI   SQ
Sbjct: 178 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 237

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
           +GR  EA+ L +EM R+G+  + +T   ++ A A + +LG GK  HA  ++ L ++D +V
Sbjct: 238 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 297

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            ++LI  YAKCGS +++  VF+ L +RN V+W  +I G  Q     +++E F +MR   +
Sbjct: 298 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 357

Query: 338 RPNGVTLLGLLWAC 351
             +   L  L+  C
Sbjct: 358 AIDQFALATLISGC 371



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 138/320 (43%), Gaps = 51/320 (15%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE-DTHNPNVVSYTTMICGLL 185
            + LH     VGL S VF+ + +L  Y+   ++ +A R+   D   PNV+++  M+ G  
Sbjct: 39  ARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYA 98

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K+    DA +LF  MP R+V SWN ++   S T R                 P  S + C
Sbjct: 99  KQGSLSDAEELFDRMPRRDVASWNTLM---SDTSR-----------------PAGSWMSC 138

Query: 246 AIIAAANIAALGMG------------------KSFHACA-VKFLGKL-------DVFVGN 279
             +    +A   +G                    F  C  V F  +L        +F  N
Sbjct: 139 GALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRN 198

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           S+++ YAK   ++ ++  F+ + ER++V+WN +I   +Q+GR  EA+     M   G+R 
Sbjct: 199 SMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRL 258

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAK-LEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           +  T    L AC    L   G+     AK +     + P   + +++L ++ G FKEAK 
Sbjct: 259 DSTTYTSSLTACAR--LFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 316

Query: 399 FLYDLPFDPGIGFWKALLGG 418
               L  D     W  L+GG
Sbjct: 317 VFNSLQ-DRNSVSWTVLIGG 335



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 104/271 (38%), Gaps = 60/271 (22%)

Query: 236 LVPNHST--LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           L+P+  T  L  A+ +  +  AL   ++ H   V       VF+ N+L+  Y  CG++ D
Sbjct: 14  LLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSD 73

Query: 294 S-LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI-----------RPNG 341
           +  L+   + E N++T N ++ GYA+ G   +A E F+RM    +           RP G
Sbjct: 74  ARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAG 133

Query: 342 V--------------TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
                           LLGL W  +  G                     P+    +VD+ 
Sbjct: 134 SWMSCGALGCRELAPQLLGLFWKFDFWG--------------------DPDVETALVDMF 173

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ----IHSNVELGEFAARRILALDPEDV 443
            R G    A      +   P I    ++L G      I   +E  E  A R       DV
Sbjct: 174 VRCGYVDFASRLFSQIE-RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER-------DV 225

Query: 444 SSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
            S+ M+  ALS +G+      +  EM  KG+
Sbjct: 226 VSWNMMIAALSQSGRVREALGLVVEMHRKGV 256


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 256/453 (56%), Gaps = 11/453 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS    F    +VF+ + D N VS T +IG   +   + +++ LF++M    +   +F 
Sbjct: 318 CGS----FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 373

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             ++I       DL LG+QLH+   K G    + V ++++ LY K   ++ A  VF    
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 433

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             ++VS+T+MI    +      A + F  M  RN ++WNAM+G Y Q G  E+ + ++  
Sbjct: 434 ERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSA 493

Query: 231 ML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           ML ++ + P+  T        A+I A  +G       VK    L+V V N+ I+ Y+KCG
Sbjct: 494 MLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCG 553

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            + ++  +FD L  +++V+WNA+I GY+Q+G G++A + F+ M   G +P+ ++ + +L 
Sbjct: 554 RISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLS 613

Query: 350 ACNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            C+H+GLV++G  YF   ++     PG+   EH++CMVDLL R+G   EAK+ +  +P  
Sbjct: 614 GCSHSGLVQEGKLYFDMMTRVHGISPGL---EHFSCMVDLLGRAGHLTEAKDLIDKMPMK 670

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W ALL  C+IH N EL E AA+ +  LD  D  SY++L+   S AGK D+ + +R
Sbjct: 671 PTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVR 730

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           + M++KG+ + PG SW+E+++KVHVF   D +H
Sbjct: 731 KLMRDKGIKKNPGYSWMEVENKVHVFKADDVSH 763



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 159/300 (53%), Gaps = 1/300 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTF 111
           ++    S   ++FD +P  +V S  T++  + +   + + +  F  M    +  P+ FTF
Sbjct: 82  AKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTF 141

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
             V+ S  AL    L  QL     K     +  V +A++D++++   ++ A+R+F     
Sbjct: 142 CCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIER 201

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P +    +M+ G  K    + A++ F++M  R+VVSWN MI   SQ+GR  EA+ L +EM
Sbjct: 202 PTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEM 261

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            R+G+  + +T   ++ A A + +LG GK  HA  ++ L ++D +V ++LI  YAKCGS 
Sbjct: 262 HRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSF 321

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +++  VF+ L +RN V+W  +I G  Q     +++E F +MR   +  +   L  L+  C
Sbjct: 322 KEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 148/326 (45%), Gaps = 37/326 (11%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE-DTHNPNVVSYTTMICGLL 185
            + LH     VGL S VF+ + +L  Y+   ++ +A R+   D   PNV+++  M+ G  
Sbjct: 23  ARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYA 82

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLP 244
           K+    DA +LF  MP R+V SWN ++ GY Q  R  + +  F+ M R G  +PN  T  
Sbjct: 83  KQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFC 142

Query: 245 CAIIAAANIAA-------LGMGKSFH----------------ACA-VKFLGKL------- 273
           C + +   +         LG+   F                  C  V F  +L       
Sbjct: 143 CVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERP 202

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
            +F  NS+++ YAK   ++ ++  F+ + ER++V+WN +I   +Q+GR  EA+     M 
Sbjct: 203 TIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMH 262

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK-LEDPGMLKPEHYACMVDLLSRSGR 392
             G+R +  T    L AC    L   G+     AK +     + P   + +++L ++ G 
Sbjct: 263 RKGVRLDSTTYTSSLTACAR--LFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGG 418
           FKEAK     L  D     W  L+GG
Sbjct: 321 FKEAKRVFNSLQ-DRNSVSWTVLIGG 345



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 16/207 (7%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +V   N +++ YAK GS+ D+  +FD++  R++ +WN ++ GY Q  R  + +E F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 334 INGIR-PNGVTLLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSG 391
            +G   PN  T   ++ +C   G  E          K +  G   P+    +VD+  R G
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWG--DPDVETALVDMFVRCG 187

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQ----IHSNVELGEFAARRILALDPEDVSSYV 447
               A      +   P I    ++L G      I   +E  E  A R       DV S+ 
Sbjct: 188 YVDFASRLFSQIE-RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER-------DVVSWN 239

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGM 474
           M+  ALS +G+      +  EM  KG+
Sbjct: 240 MMIAALSQSGRVREALGLVVEMHRKGV 266


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 176/522 (33%), Positives = 273/522 (52%), Gaps = 23/522 (4%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C S+    + S+LH+ A    ++  KA   +L+            + S +      
Sbjct: 36  LLAGCASA---RRASELHAAAVRAGVDQDKAVDFRLQRAY---------AASGRLDLAVA 83

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTALE 122
           +    PD   V  T+ I   + +  +  A+ L S MLL + + P+  T  + +P   A  
Sbjct: 84  LLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLP---ACG 140

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVVSYTTMI 181
            L +G+ LH +A K+ L    +V +A+L +Y +      A  +F+    +P+VVS T M+
Sbjct: 141 GLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAML 200

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               K    +DA  LF  +P ++++ WNAM+ GY+Q GR  EA+ LF  MLR G+ P+  
Sbjct: 201 TCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEV 260

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGK---LDVFVGNSLISFYAKCGSMEDSLLVF 298
           ++  A+ A A +     G+  H+       +   L+  VG +LI  Y KCGS+ED++ VF
Sbjct: 261 SVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVF 320

Query: 299 DKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
             L   +R+IV WNA++ GYA +G   EA+  F ++R  G+ P  +T +G+L AC+H+GL
Sbjct: 321 GDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGL 380

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKAL 415
           V++G   F     E     K EHY CMVDLL R+GR +EA E +  +    P    W +L
Sbjct: 381 VDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASL 440

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C++H N+ELG+  A  ++A    +  +YV+LSN  + AG W  V  +R  M+  G+ 
Sbjct: 441 LAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQ 500

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + PGCS +E+  +V  FV GDR+H    EIYA L       R
Sbjct: 501 KEPGCSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMAR 542


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/512 (31%), Positives = 276/512 (53%), Gaps = 63/512 (12%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL +C +  + N+  ++H+    +LI   +A++ K     + T+ V   SE  + +   +
Sbjct: 284 LLTLCANQRNDNQGRQIHA----HLI---RANITK--NIIVETELVHMYSECGRLNYAKE 334

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+ + + N  S  ++I  + +    +EA+ LF +M L  I+P  F+  S++ S  +L D
Sbjct: 335 IFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSD 394

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
              G++LH +  +  ++    +   ++D+Y K  S++ A +V++ T              
Sbjct: 395 SQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQT-------------- 440

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +K++R              N   WN+++ GY+  G  +E+ N F+EML        S +
Sbjct: 441 -IKKDR--------------NTALWNSILAGYANKGLKKESFNHFLEMLE-------SDI 478

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              ++    I  L                  + +  +L+  Y+KCG++  +  VFD +  
Sbjct: 479 EYDVLTMVTIVNL------------------LVLETALVDMYSKCGAITKARTVFDNMNG 520

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +NIV+WNA+I GY+++G  +EA+  +E M   G+ PN VT L +L AC+HTGLVE+G   
Sbjct: 521 KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRI 580

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F+  + +     K EHY CMVDLL R+GR ++AKEF+  +P +P +  W ALLG C++H 
Sbjct: 581 FTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHK 640

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           ++++G  AA+R+  LDP++   YV++SN  + AG+W  V +IR+ MK KG+ + PG SWI
Sbjct: 641 DMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWI 700

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
           EI S++ +F  G + H   +EIY  LR  T Q
Sbjct: 701 EINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQ 732



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 177/367 (48%), Gaps = 37/367 (10%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           D      ++F+E+P+ N+ +  T+I  +A+   Y EA  +F RML + + P  FTF S +
Sbjct: 123 DDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASAL 182

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
               AL   + GKQ+H+     G + + FVG+A++D+Y K    E   +VF++    N V
Sbjct: 183 RVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQV 242

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           ++ ++I    +   F DAL LF  M                                 +G
Sbjct: 243 TWNSIISAEAQFGHFNDALVLFLRMQES-----------------------------EDG 273

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P+  T    +   AN      G+  HA  ++     ++ V   L+  Y++CG +  + 
Sbjct: 274 IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAK 333

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +F+++ ERN  +WN++I GY QNG  +EA+  F++M++NGI+P+  +L  +L +C    
Sbjct: 334 EIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLS 393

Query: 356 LVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA-KEFLYDLPFDPGIGF 411
             +KG   +++  +  +E+ G+L+      +VD+ ++ G    A K +   +  D     
Sbjct: 394 DSQKGRELHNFIVRNTMEEEGILQ----VVLVDMYAKCGSMDYAWKVYDQTIKKDRNTAL 449

Query: 412 WKALLGG 418
           W ++L G
Sbjct: 450 WNSILAG 456



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 182/366 (49%), Gaps = 26/366 (7%)

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFED---ALKLFQEMPHRNVVSWNAMIGGYSQTG 219
           T++  + +NP+    T ++    +    +D   A KLF+EMP RN+ +WN MI  Y++  
Sbjct: 95  TQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVD 154

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
              EA  +F  ML+ G+ P++ T   A+     + +   GK  H+  +    K D FVGN
Sbjct: 155 DYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGN 214

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR--INGI 337
           +LI  YAKC   E  L VFD++ ERN VTWN++I   AQ G   +A+  F RM+   +GI
Sbjct: 215 ALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGI 274

Query: 338 RPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +P+  T   LL  C +     +G   +++  +A +    +++ E    +V + S  GR  
Sbjct: 275 QPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETE----LVHMYSECGRLN 330

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSN- 451
            AKE +++   +     W +++ G Q +   +  L  F   ++  + P+  S   MLS+ 
Sbjct: 331 YAKE-IFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 389

Query: 452 -ALSVAGKWDNVSN--IRREMKEKGMTRV------PGCSWIEIKSKVH-VFVTGDRNHHM 501
            +LS + K   + N  +R  M+E+G+ +V        C  ++   KV+   +  DRN  +
Sbjct: 390 VSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTAL 449

Query: 502 NDEIYA 507
            + I A
Sbjct: 450 WNSILA 455



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 145/324 (44%), Gaps = 50/324 (15%)

Query: 44  IRTDSVSCGSESDKF---------------SSVHQVFDEVPDLNVVSATTIIGRFAKQHH 88
           + +  ++CG + D F                S  +VFDE+ + N V+  +II   A+  H
Sbjct: 197 VHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGH 256

Query: 89  YEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
           + +A+ LF RM      I+P +FTF +++       + N G+Q+HA   +  +  N+ V 
Sbjct: 257 FNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 316

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           + ++ +Y +   +  A  +F      N  S+ +MI G  +    ++AL+LF++M      
Sbjct: 317 TELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ----- 371

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
                                       G+ P+  +L   + +  +++    G+  H   
Sbjct: 372 --------------------------LNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFI 405

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL--TERNIVTWNAVICGYAQNGRGEE 324
           V+   + +  +   L+  YAKCGSM+ +  V+D+    +RN   WN+++ GYA  G  +E
Sbjct: 406 VRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKE 465

Query: 325 AIEFFERMRINGIRPNGVTLLGLL 348
           +   F  M  + I  + +T++ ++
Sbjct: 466 SFNHFLEMLESDIEYDVLTMVTIV 489



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED---SLLVFDKLTERNIVTWNAVICG 315
           GKS H   +      D ++   ++  YA+ G ++D   +  +F+++ ERN+  WN +I  
Sbjct: 90  GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           YA+     EA   F+RM   G+ P+  T    L  C
Sbjct: 150 YARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVC 185


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 250/448 (55%), Gaps = 33/448 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +   +++    +I   +    ++EA  +F  +    +  +  T  +V+ S+ +LE
Sbjct: 266 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLE 325

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             +  +Q+HA A K+G   +  V + ++D Y K S + +A RVF                
Sbjct: 326 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVF---------------- 369

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                          +E    ++++  +MI   SQ    E A+ LF+EMLR+GL P+   
Sbjct: 370 ---------------EECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 414

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+++A   GK  HA  +K     D F GN+L+  YAKCGS+ED+ L F  L 
Sbjct: 415 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP 474

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER +V+W+A+I G AQ+G G+ A+E F RM   GI PN +T+  +L ACNH GLV++   
Sbjct: 475 ERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKR 534

Query: 363 YFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YF+  K E  G+ +  EHY+CM+DLL R+G+  +A E +  +PF      W ALLG  ++
Sbjct: 535 YFNSMK-EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRV 593

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + ELG+ AA ++  L+PE   ++V+L+N  + +G W+ V+ +R+ MK+  + + P  S
Sbjct: 594 HKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMS 653

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           W+E+K KVH F+ GD++H M  EIY+ L
Sbjct: 654 WVEVKDKVHTFIVGDKSHPMTKEIYSKL 681



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 146/287 (50%), Gaps = 32/287 (11%)

Query: 63  QVFDEV-PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           +VFDE   + N VS   ++  + K     +AI +F  M+   I+P+EF F  V+ + T  
Sbjct: 63  RVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 122

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            +++ G+Q+HA   ++G + +VF  +A++D+Y+K+  ++ A+ +FE              
Sbjct: 123 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFE-------------- 168

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                            +MP  +VVSWNA+I G    G +  A+ L ++M   GLVPN  
Sbjct: 169 -----------------KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVF 211

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
            L   + A A   A  +G+  H   +K     D ++G  L+  YAK   ++D++ VFD +
Sbjct: 212 MLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWM 271

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           + R+++ WNA+I G +  GR +EA   F  +R  G+  N  TL  +L
Sbjct: 272 SHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 318



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 166/361 (45%), Gaps = 33/361 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++PD +VVS   +I       H   AI L  +M    + P+ F   S++ +      
Sbjct: 166 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGA 225

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +LG+Q+H +  K    S+ ++G  ++D+Y K                            
Sbjct: 226 FDLGRQIHGFMIKANADSDDYIGVGLVDMYAK---------------------------- 257

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                  +DA+K+F  M HR+++ WNA+I G S  GR++EA ++F  + +EGL  N +TL
Sbjct: 258 ---NHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTL 314

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + + A++ A    +  HA A K     D  V N LI  Y KC  + D++ VF++ + 
Sbjct: 315 AAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSS 374

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            +I+   ++I   +Q   GE AI+ F  M   G+ P+   L  LL AC      E+G   
Sbjct: 375 GDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQV 434

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            +   ++   M        +V   ++ G  ++A+     LP + G+  W A++GG   H 
Sbjct: 435 HAHL-IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHG 492

Query: 424 N 424
           +
Sbjct: 493 H 493



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 38/300 (12%)

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D  LG Q+HA A   G  S+VFV +A++ +Y     +++A RVF++  +           
Sbjct: 22  DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGS----------- 70

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                               RN VSWN ++  Y +  +  +A+ +F EM+  G+ P    
Sbjct: 71  -------------------ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFG 111

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
             C + A      +  G+  HA  V+   + DVF  N+L+  Y K G ++ + ++F+K+ 
Sbjct: 112 FSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP 171

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
           + ++V+WNA+I G   NG    AIE   +M+ +G+ PN   L  +L AC   G  + G  
Sbjct: 172 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ 231

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            + +  +A  +    +       +VD+ +++    +A + ++D      +  W AL+ GC
Sbjct: 232 IHGFMIKANADSDDYIG----VGLVDMYAKNHFLDDAMK-VFDWMSHRDLILWNALISGC 286



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 116/259 (44%), Gaps = 35/259 (13%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            S   +VF+E    ++++ T++I   ++  H E AI LF  ML   + P  F   S++ +
Sbjct: 362 LSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA 421

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
             +L     GKQ+HA   K    S+ F G+A++  Y K  SIE+A   F       VVS+
Sbjct: 422 CASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSW 481

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           + MI GL                               +Q G  + A+ LF  M+ EG+ 
Sbjct: 482 SAMIGGL-------------------------------AQHGHGKRALELFGRMVDEGIN 510

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN--SLISFYAKCGSMEDSL 295
           PNH T+  +++ A N A L      +  ++K +  +D    +   +I    + G ++D++
Sbjct: 511 PNHITMT-SVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 569

Query: 296 LVFDKLT-ERNIVTWNAVI 313
            + + +  + N   W A++
Sbjct: 570 ELVNSMPFQANASVWGALL 588



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 12/203 (5%)

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  EG+  N   LP  +    +     +G   HA A+      DVFV N+L++ Y   G 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDAQ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 291 MEDSLLVFDKL-TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           M+D+  VFD+  +ERN V+WN ++  Y +N +  +AI+ F  M  +GI+P       ++ 
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           AC  +  ++ G      A +   G  K    A  +VD+  + GR   A      +P D  
Sbjct: 118 ACTGSRNIDAGRQV--HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSD 174

Query: 409 IGFWKALLGGCQI----HSNVEL 427
           +  W AL+ GC +    H  +EL
Sbjct: 175 VVSWNALISGCVLNGHDHRAIEL 197


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/450 (36%), Positives = 246/450 (54%), Gaps = 39/450 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F E+P  NVVS TT++   A++     A  +F  M                P       
Sbjct: 123 LFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAM----------------PE------ 160

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
               + L +WA             A++  Y++ +  +EA ++FE   + NVV+ T MI G
Sbjct: 161 ----RNLVSWA-------------AMITGYVENAMFDEARKLFEAMPDKNVVACTAMITG 203

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
             K    E A +LF  +P ++V+SWNAMI GY   G  EEA+ L I M REG+ P+H+TL
Sbjct: 204 YCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATL 263

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A + +A L  G+S HA A K + +      N+L++ Y+KCG++ +S LVF  L  
Sbjct: 264 IAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKI 323

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           ++IV+WN +I  YAQ+G+ ++AI  F  M   G+ PN +T+L +L AC H G V      
Sbjct: 324 QDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLEL 383

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F     +       EHYAC+VD+L R+G+ ++A  ++  +PF+     W ALLG  + H 
Sbjct: 384 FDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYIKKMPFEAERNVWGALLGASKTHG 443

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           NV+LGE AA+ ++  D      YVMLSN  + AG W  V+ +R +MKEKG+ + PG SW 
Sbjct: 444 NVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGEVNRVRGQMKEKGVKKQPGYSWT 503

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCT 513
           EI +KV++FV GD +H   ++I + LR  +
Sbjct: 504 EIANKVNMFVGGDASHPEMNKIISELRKIS 533



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 146/313 (46%), Gaps = 16/313 (5%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           NV   ++++   +    ++ A+  F      NV S+  M+ GL++  R +DA  LF EMP
Sbjct: 69  NVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMP 128

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            RNVVS+  M+ G ++ G    A  +F  M    LV   + +   +  A    A    K 
Sbjct: 129 QRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEAR---KL 185

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
           F A   K     +V    ++I+ Y K G +E +  +FD +  +++++WNA+I GY  NG 
Sbjct: 186 FEAMPDK-----NVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGH 240

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA 381
           GEEA++    M   G++P+  TL+ +L AC+   L+ +G S  + A      ML+     
Sbjct: 241 GEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVAT---KTMLESSTSF 297

Query: 382 C--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILA 437
           C  ++ + S+ G   E++    +L     I  W  ++     H   +  +  F       
Sbjct: 298 CNALMTMYSKCGNVGESELVFMNLKIQD-IVSWNTIIAAYAQHGKYQKAIALFHEMETRG 356

Query: 438 LDPEDVSSYVMLS 450
           L P D++   MLS
Sbjct: 357 LIPNDITILSMLS 369



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 90/173 (52%), Gaps = 4/173 (2%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  ++FD +P  +V+S   +I  +    H EEA+ L   M    ++P   T  +++ + +
Sbjct: 212 SARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACS 271

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           AL  L  G+  HA ATK  L+S+    +A++ +Y K  ++ E+  VF +    ++VS+ T
Sbjct: 272 ALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNT 331

Query: 180 MICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLF 228
           +I    +  +++ A+ LF EM  R    N ++  +M+      GR  +++ LF
Sbjct: 332 IIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELF 384



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 27/243 (11%)

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV-NLFIEMLREGLVPN 239
           I  L +      A ++F  MP R+VVSWNA++    + GR+  A   LF +M      P+
Sbjct: 14  ITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDM------PS 67

Query: 240 HSTLPCAIIAAANIA--ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            + +    + A  +A   L    ++ A A     + +V   N++++   + G M+D+  +
Sbjct: 68  RNVISWNSVVAGCLAHGDLDAASAYFARA----PRRNVASWNAMLAGLVRLGRMDDAWAL 123

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F ++ +RN+V++  ++ G A+ G    A E F+ M    +         + WA   TG V
Sbjct: 124 FGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNL---------VSWAAMITGYV 174

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           E   + F +A+     M      AC  M+    + G  + A+     +P    I  W A+
Sbjct: 175 EN--AMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVIS-WNAM 231

Query: 416 LGG 418
           + G
Sbjct: 232 ITG 234



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 32/167 (19%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG-EEAIEFFERMRINGI 337
           N  I+  A+ G +  +  VFD +  R++V+WNA++    + GR    A   F+ M     
Sbjct: 11  NQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSR-- 68

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQA-------------------KLEDPGMLKPE 378
             N ++   ++  C   G ++   +YF++A                   +++D   L  E
Sbjct: 69  --NVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGE 126

Query: 379 -------HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
                   Y  MVD L+R G    A+E    +P +  +  W A++ G
Sbjct: 127 MPQRNVVSYTTMVDGLARRGEVARAREVFDAMP-ERNLVSWAAMITG 172


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 260/472 (55%), Gaps = 2/472 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPS 107
           VS  ++S        +FDE P  ++   ++++   +     E A+ +   ML  + + P 
Sbjct: 45  VSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPD 104

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            F   SV      L    LG+QLHA         +  V S+++D+Y K  S ++  +VF+
Sbjct: 105 HFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFD 164

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                N V +T ++ G     R E+AL+LF+ MP RN+ +W A+I G   TG +  AV L
Sbjct: 165 SMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVEL 224

Query: 228 FIEMLREGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           F+EM R+G+ + +   L   I  +A++AA  +G+  H   ++     ++ VGN+LI  Y+
Sbjct: 225 FVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYS 284

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KC  +  +  VF+ +T R++++W  ++ G AQ+GR EEA+  ++RM + G +PN VT +G
Sbjct: 285 KCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVG 344

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           L++AC+H GLV+KG   F   K E     + +HY C +DLLSRSG   EA+E +  +P++
Sbjct: 345 LIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYE 404

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W ALL  C  + + E+    + ++L L P+D S+Y++LSN  +V GKWD+V+ +R
Sbjct: 405 PDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVR 464

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + M    + + PG SWIE   +  +F  G+    + +EI   L     ++R+
Sbjct: 465 KCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRK 516



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           H PN  +   ++    K     DAL LF E P R++  +++++   S +   E A+ +  
Sbjct: 37  HPPNPAA---LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILR 93

Query: 230 EMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            ML  + L P+H  +       A + +  +G+  HA  V      D  V +SL+  Y KC
Sbjct: 94  CMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKC 153

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS +D   VFD ++ +N V W A++ GYA NGR EEA++ F  M        G  L    
Sbjct: 154 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM-------PGRNLFA-- 204

Query: 349 WACNHTGLVEKGYS 362
           W    +GLV  G S
Sbjct: 205 WTALISGLVNTGES 218


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/465 (34%), Positives = 264/465 (56%), Gaps = 38/465 (8%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS-EFTFGSVIP 116
           F     +FD++P+ +  S T II    + +  EEA+ L+  M   +   S + T  S + 
Sbjct: 200 FEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALA 259

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +S A+  L++GK++H    ++GL S+  V  ++LD+Y K  SIEEA  +F+         
Sbjct: 260 ASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFD--------- 310

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                                 +M  R+VVSW  MI  Y + GR EE   LF  ++   +
Sbjct: 311 ----------------------KMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNI 348

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF--VGNSLISFYAKCGSMEDS 294
           +PN  T    + A A++AA  +GK  HA  V+     D F    ++L+  Y+KCG +E++
Sbjct: 349 MPNDFTFAGVLNACADLAAEDLGKQIHAYMVRV--GFDSFSSAASALVHMYSKCGDIENA 406

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VF+ L + ++ +W +++ GYAQ+G+ ++A+ FFE +  +G +P+G+  +G+L AC H 
Sbjct: 407 KSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHA 466

Query: 355 GLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           GLV+KG  YF   K E  G+ +  +HYAC++DLL+R+G+F EA+  + ++P  P    W 
Sbjct: 467 GLVDKGLEYFHSIK-EKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWA 525

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           ALLGGC+IH N+EL + AA+ +  ++PE+ ++YV L+N  + AG     +NIR  M  +G
Sbjct: 526 ALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRG 585

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + + PG SWIEI+ +VHVF  GD +H  + EI   L   +++++E
Sbjct: 586 IVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKE 630



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 231/497 (46%), Gaps = 49/497 (9%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  CR+ + +N  +   S+   + I+  K + +++++  I T  ++  S++     +  
Sbjct: 18  LLPFCRNEIDVNYKA---SIGVEFQIQVLKINGKEVKSLIILTRDLTTPSQTHIGKKI-I 73

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLF---SRM-----LLLNI-RPSEFTFGSV 114
           +FD             I R      ++EAI +    SR+     LL  I +P    + ++
Sbjct: 74  LFD--------GKDAYINRLCDSKLFKEAIDILCGQSRLREAVQLLYRIEKPYASIYLTL 125

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +        L  GKQ+HA     G    +++ + +LD+Y K  S+ +A +VF++  + ++
Sbjct: 126 LKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDL 184

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
            S+  MI G +K   FE A  LF +MP+R+  SW A+I G  Q  R EEA+ L+  M + 
Sbjct: 185 CSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKH 244

Query: 235 GLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
                N  T+  A+ A+A I +L MGK  H   ++     D  V  SL+  Y KCGS+E+
Sbjct: 245 DYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEE 304

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN- 352
           +  +FDK+ ER++V+W  +I  Y +NGR EE    F  +  + I PN  T  G+L AC  
Sbjct: 305 ARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACAD 364

Query: 353 ----------HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
                     H  +V  G+  FS A             + +V + S+ G  + AK     
Sbjct: 365 LAAEDLGKQIHAYMVRVGFDSFSSAA------------SALVHMYSKCGDIENAKSVFEI 412

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELG-EFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
           LP  P +  W +LL G   H   +    F    + +    D  +++ + +A + AG  D 
Sbjct: 413 LP-QPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDK 471

Query: 462 VSNIRREMKEK-GMTRV 477
                  +KEK G+TR 
Sbjct: 472 GLEYFHSIKEKHGLTRT 488


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/466 (34%), Positives = 255/466 (54%), Gaps = 37/466 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S   K+    +VFDE+   +VVS T +I  + +   ++EAI LF +M   ++ P+  TF 
Sbjct: 151 SVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFV 207

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +   +  L++GK +H    K      + VG+A++D+Y+K   + EA          
Sbjct: 208 SVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEAR--------- 258

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                 KLF E+P R++VSW ++I G  Q  + ++++ LF +M 
Sbjct: 259 ----------------------KLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQ 296

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G+ P+   L   + A A++ AL  G+       +   + D+ +G +L+  YAKCG +E
Sbjct: 297 ISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIE 356

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            +L +F+ +  RNI TWNA++ G A +G G EA++ FE M   GIRPN VT L +L AC 
Sbjct: 357 MALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACC 416

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H+GLV +G SYF Q  +  P    P  EHY CM+DLL R+G   EA +F+ ++P  P + 
Sbjct: 417 HSGLVAEGRSYFYQM-ISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVL 475

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W ALL  C+ + NVEL +     +L L  +D   YV+LSN  +   +WD+V+ +RR MK
Sbjct: 476 IWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMK 535

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           +KG+ + PG S IE+  + H F+ GD NH  N++I+ +L     Q+
Sbjct: 536 DKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLNILANQV 581



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 179/358 (50%), Gaps = 40/358 (11%)

Query: 70  DLNV--VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           DL+V  +   T+I  +A     + A  ++ R++     P  +TF  V+ + T    +  G
Sbjct: 65  DLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEG 124

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +Q+H  A K+G   +++V +++L  Y                           +CG    
Sbjct: 125 EQVHGVAVKMGFLCDLYVQNSLLHFY--------------------------SVCG---- 154

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
            ++  A ++F EM  R+VVSW  +I GY +TG  +EA+NLF++M    +VPN +T    +
Sbjct: 155 -KWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVL 210

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
           +A   +  L MGK  H    K    + + VGN+L+  Y KC  + ++  +FD+L +R+IV
Sbjct: 211 VACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIV 270

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +W ++I G  Q  + ++++E F  M+I+G+ P+ + L  +L AC   G ++  Y  + Q 
Sbjct: 271 SWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALD--YGRWVQE 328

Query: 368 KLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSN 424
            +E  G+    H    +VD+ ++ G  + A      +P +  I  W ALLGG  +H +
Sbjct: 329 YIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIP-NRNIFTWNALLGGLAMHGH 385



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 125/268 (46%), Gaps = 19/268 (7%)

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
           H   + +N +I  Y+ +   + A  ++  ++  G VP+  T P  + A      +  G+ 
Sbjct: 67  HVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQ 126

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
            H  AVK     D++V NSL+ FY+ CG    +  VFD++  R++V+W  +I GY + G 
Sbjct: 127 VHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGL 186

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE--KGYSYFSQAKLEDPGMLKPEH 379
            +EAI  F +M    + PN  T + +L AC   G +   KG       +    G++    
Sbjct: 187 FDEAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGN- 242

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC----QIHSNVELGEFAARRI 435
              +VD+  +     EA++   +LP D  I  W +++ G     Q   ++EL  F   +I
Sbjct: 243 --ALVDMYVKCECLCEARKLFDELP-DRDIVSWTSIISGLVQCKQPKDSLEL--FYDMQI 297

Query: 436 LALDPEDVSSYVMLSNALSVA----GKW 459
             ++P+ +    +LS   S+     G+W
Sbjct: 298 SGVEPDRIILTSVLSACASLGALDYGRW 325


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 256/453 (56%), Gaps = 11/453 (2%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS    F    +VF+ + D N VS T +IG   +   + +++ LF++M    +   +F 
Sbjct: 318 CGS----FKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFA 373

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             ++I       DL LG+QLH+   K G    + V ++++ LY K   ++ A  VF    
Sbjct: 374 LATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMS 433

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             ++VS+T+MI    +      A + F  M  RN ++WNAM+G Y Q G  E+ + ++  
Sbjct: 434 ERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSA 493

Query: 231 ML-REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           ML ++ + P+  T        A+I A  +G       VK    L+V V N+ I+ Y+KCG
Sbjct: 494 MLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCG 553

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            + ++  +FD L  +++V+WNA+I GY+Q+G G++A + F+ M   G +P+ ++ + +L 
Sbjct: 554 RISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLS 613

Query: 350 ACNHTGLVEKGYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            C+H+GLV++G  YF   ++     PG+   EH++CMVDLL R+G   EAK+ +  +P  
Sbjct: 614 GCSHSGLVQEGKLYFDMMTRVHGISPGL---EHFSCMVDLLGRAGHLTEAKDLIDKMPMK 670

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W ALL  C+IH N EL E AA+ +  LD  D  SY++L+   S AGK D+ + +R
Sbjct: 671 PTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVR 730

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           + M++KG+ + PG SW+E+++KVHVF   D +H
Sbjct: 731 KLMRDKGIKKNPGYSWMEVENKVHVFKADDVSH 763



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 159/300 (53%), Gaps = 1/300 (0%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTF 111
           ++    S   ++FD +P  +V S  T++  + +   + + +  F  M    +  P+ FTF
Sbjct: 82  AKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTF 141

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
             V+ S  AL    L  QL     K     +  V +A++D++++   ++ A+R+F     
Sbjct: 142 CCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIER 201

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P +    +M+ G  K    + A++ F++M  R+VVSWN MI   SQ+GR  EA+ L +EM
Sbjct: 202 PTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEM 261

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            R+G+  + +T   ++ A A + +LG GK  HA  ++ L ++D +V ++LI  YAKCGS 
Sbjct: 262 HRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSF 321

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +++  VF+ L +RN V+W  +I G  Q     +++E F +MR   +  +   L  L+  C
Sbjct: 322 KEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 147/326 (45%), Gaps = 37/326 (11%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE-DTHNPNVVSYTTMICGLL 185
            + LH     VGL S VF+ + +L  Y    ++ +A R+   D   PNV+++  M+ G  
Sbjct: 23  ARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYA 82

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLP 244
           K+    DA +LF  MP R+V SWN ++ GY Q  R  + +  F+ M R G  +PN  T  
Sbjct: 83  KQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFC 142

Query: 245 CAIIAAANIAA-------LGMGKSFH----------------ACA-VKFLGKL------- 273
           C + +   +         LG+   F                  C  V F  +L       
Sbjct: 143 CVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERP 202

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
            +F  NS+++ YAK   ++ ++  F+ + ER++V+WN +I   +Q+GR  EA+     M 
Sbjct: 203 TIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMH 262

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK-LEDPGMLKPEHYACMVDLLSRSGR 392
             G+R +  T    L AC    L   G+     AK +     + P   + +++L ++ G 
Sbjct: 263 RKGVRLDSTTYTSSLTACAR--LFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGS 320

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGG 418
           FKEAK     L  D     W  L+GG
Sbjct: 321 FKEAKRVFNSLQ-DRNSVSWTVLIGG 345



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 16/207 (7%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           +V   N +++ YAK GS+ D+  +FD++  R++ +WN ++ GY Q  R  + +E F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 334 INGIR-PNGVTLLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSG 391
            +G   PN  T   ++ +C   G  E          K +  G   P+    +VD+  R G
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWG--DPDVETALVDMFVRCG 187

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQ----IHSNVELGEFAARRILALDPEDVSSYV 447
               A      +   P I    ++L G      I   +E  E  A R       DV S+ 
Sbjct: 188 YVDFASRLFSQIE-RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER-------DVVSWN 239

Query: 448 MLSNALSVAGKWDNVSNIRREMKEKGM 474
           M+  ALS +G+      +  EM  KG+
Sbjct: 240 MMIAALSQSGRVREALGLVVEMHRKGV 266


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/464 (34%), Positives = 261/464 (56%), Gaps = 34/464 (7%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS--EFTFGSV 114
           +     ++FDE+P  +  S   +I  +  Q  Y EA+ LF RM+  N   +   FT  S 
Sbjct: 144 RIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLF-RMMQENESSNCNMFTLSSA 202

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + ++ A+  L  GK++H +  + GL+ +  V +A+LDLY K  S+ EA  +F+       
Sbjct: 203 LAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFD------- 255

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                                   +M  +++VSW  MI    + GR +E  +LF +++  
Sbjct: 256 ------------------------QMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGS 291

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ PN  T    + A A++AA  MGK  H    +       F  ++L+  Y+KCG+ E +
Sbjct: 292 GVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETA 351

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VF+++   ++V+W ++I GYAQNG+ + A++FFE +  +G +P+ +T +G+L AC H 
Sbjct: 352 RRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHA 411

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           GLV+ G  YF   K +   +   +HYAC++DLL+RSGRFKEA+  + ++P  P    W +
Sbjct: 412 GLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWAS 471

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LLGGC+IH N+EL E AA+ +  L+PE+ ++Y+ LSN  + AG W   + +R +M  +G+
Sbjct: 472 LLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGI 531

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            + PG SWIEIK +VHVF+ GD +H    +I+  L   +++++E
Sbjct: 532 VKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKE 575



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 183/372 (49%), Gaps = 42/372 (11%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S H+ F+E+ +L           F +Q+  +EA+    R+     +PS   + ++I +  
Sbjct: 30  SEHRRFEEIIEL-----------FCQQNRLKEAVDYLHRI----PQPSPRLYSTLIAACL 74

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
               L LGK++HA          + + + ++ +Y K  S+ +A  +F++    ++ S+ T
Sbjct: 75  RHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNT 134

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           MI G     R E A KLF EMPHR+  SWNA+I GY   G   EA++LF  M++E    N
Sbjct: 135 MISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLF-RMMQENESSN 193

Query: 240 HS--TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            +  TL  A+ AAA I++L  GK  H   ++   +LD  V  +L+  Y KCGS+ ++  +
Sbjct: 194 CNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGI 253

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN----- 352
           FD++ +++IV+W  +I    ++GR +E    F  +  +G+RPN  T  G+L AC      
Sbjct: 254 FDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAE 313

Query: 353 ------HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
                 H  +   GY  FS A             + +V + S+ G  + A+     +P  
Sbjct: 314 QMGKEVHGYMTRVGYDPFSFAA------------SALVHVYSKCGNTETARRVFNQMP-R 360

Query: 407 PGIGFWKALLGG 418
           P +  W +L+ G
Sbjct: 361 PDLVSWTSLIVG 372


>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
          Length = 502

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 254/448 (56%), Gaps = 19/448 (4%)

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST--ALEDLNLGKQL 130
           +VS T+ I    +     EA   FSRM +  +RP+  TF +++ + T   LE L  G  +
Sbjct: 54  IVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSI 113

Query: 131 HAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           HA+  K+GL + NV VG+A++D+Y K   ++ A  +F++ H  N VS+ TMI G ++   
Sbjct: 114 HAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGE 173

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
             +A+ LF +M  R+ +SW +MIGG+ + G  E+A+  F EM   G+ P++ T+   + A
Sbjct: 174 VGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAA 233

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            AN+ ALG+G   +   +K   K ++ + NSLI  Y++CG +  +  VF+++ +R++V+W
Sbjct: 234 CANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSW 293

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           N++I G+A NG  EEA+EFF  MR  G                H+GLV++G  +F   K 
Sbjct: 294 NSMIVGFALNGHAEEALEFFNLMRKEG----------------HSGLVDEGLQFFDIMKR 337

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
                 + EHY C+VDL SR+GR ++A   + ++P  P      +LL  C+ H +V L E
Sbjct: 338 TRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAE 397

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
              + +  +DP   S+YV+LSN  +  G+WD  S +R++MK  G+ + PG S IE+   +
Sbjct: 398 RLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSI 457

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           H FV GD+ H     IYA+L     ++R
Sbjct: 458 HEFVAGDKTHVETQNIYAMLDHLFLELR 485



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 109/235 (46%), Gaps = 31/235 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++ + + +S T++IG F K+  +E+A+  F  M L  + P   T  SV+ +   L  
Sbjct: 180 LFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGA 239

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LG  ++ +  K   + N+ + ++++D+Y +   I  A +VFE     ++VS+ +MI G
Sbjct: 240 LGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVG 299

Query: 184 LLKRERFEDALKLFQEM---PHRNVVS---------------------WNAMIGGYSQTG 219
                  E+AL+ F  M    H  +V                      +  ++  YS+ G
Sbjct: 300 FALNGHAEEALEFFNLMRKEGHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAG 359

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
           R E+A+N+   M    + PN   L   + A      +G+ +      +K+L ++D
Sbjct: 360 RLEDALNVIANM---PMKPNEVVLGSLLAACRTHGDVGLAERL----MKYLCEVD 407


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 256/456 (56%), Gaps = 14/456 (3%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N+V+ T+++   A+   + E + LF RM +  I  +      V+  S  L   + GK +H
Sbjct: 235 NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIH 294

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            +  K G ++ +FV ++++ LY K  ++  A  +F +    N+VS+  +I         +
Sbjct: 295 GYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCD 354

Query: 192 DALKLFQE--------MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           +A  +F +        M   NVVSW+A+IGG++  G+ EEA+ LF  M    +  N  T+
Sbjct: 355 EAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTI 414

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   A +AAL +G+  H   V+ L   ++ VGN LI+ Y K GS ++  LVF+K+  
Sbjct: 415 ASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIEN 474

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN ++ GY  +G GE AI  F++M  +G  P+GVT + +L AC+H GLV +G   
Sbjct: 475 KDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGREL 534

Query: 364 FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F +   E   +P M   EHYACMVDLL R+G  +EA + +  +P +P    W ALL  C+
Sbjct: 535 FDKMIKEFRVEPQM---EHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCR 591

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H N E+ E  A +I  L+ E   SY++LSN  + +G+W++ + +R   K KG+ + PG 
Sbjct: 592 MHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQ 651

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           SWI++K KV++F  G+  H   +E+Y +L+    Q+
Sbjct: 652 SWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQM 687



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 214/484 (44%), Gaps = 71/484 (14%)

Query: 37  QKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK----------- 85
           Q++ +  I T S      + +  SV+  F  V D   V   + I  F+            
Sbjct: 51  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 110

Query: 86  -QHHY-EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNV 143
             H Y EEA+ ++ RM  L +    FTF  VI +   +    L + +H    ++G Q N+
Sbjct: 111 VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNL 170

Query: 144 FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203
            VG+ ++ +Y K+  +++A +VFE     + VS+ TM+ G         A ++F+ M   
Sbjct: 171 HVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSA 230

Query: 204 ----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
               N+V+W +++  +++ G++ E + LF  M   G+      L   +  + ++AA   G
Sbjct: 231 GLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEG 290

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN--------- 310
           K  H   VK   +  +FV NSLI  Y K G++  + ++F ++  +NIV+WN         
Sbjct: 291 KVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADL 350

Query: 311 ------------------------------AVICGYAQNGRGEEAIEFFERMRINGIRPN 340
                                         AVI G+A  G+GEEA+E F RM++  ++ N
Sbjct: 351 GWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKAN 410

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
            VT+  +L  C     +  G          L D  +L       ++++ ++SG FKE   
Sbjct: 411 SVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNG---LINMYTKSGSFKEGN- 466

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL-----DPEDVSSYVMLSNAL 453
            +++   +  +  W  ++ G  IH    LGE A R    +     +P+ V ++V + +A 
Sbjct: 467 LVFEKIENKDLISWNTMVAGYGIHG---LGENAIRTFDQMIKDGFEPDGV-TFVAVLSAC 522

Query: 454 SVAG 457
           S AG
Sbjct: 523 SHAG 526


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 256/456 (56%), Gaps = 14/456 (3%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N+V+ T+++   A+   + E + LF RM +  I  +      V+  S  L   + GK +H
Sbjct: 235 NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIH 294

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            +  K G ++ +FV ++++ LY K  ++  A  +F +    N+VS+  +I         +
Sbjct: 295 GYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCD 354

Query: 192 DALKLFQE--------MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           +A  +F +        M   NVVSW+A+IGG++  G+ EEA+ LF  M    +  N  T+
Sbjct: 355 EAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTI 414

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              +   A +AAL +G+  H   V+ L   ++ VGN LI+ Y K GS ++  LVF+K+  
Sbjct: 415 ASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIEN 474

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++++WN ++ GY  +G GE AI  F++M  +G  P+GVT + +L AC+H GLV +G   
Sbjct: 475 KDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGREL 534

Query: 364 FSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           F +   E   +P M   EHYACMVDLL R+G  +EA + +  +P +P    W ALL  C+
Sbjct: 535 FDKMIKEFRVEPQM---EHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCR 591

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H N E+ E  A +I  L+ E   SY++LSN  + +G+W++ + +R   K KG+ + PG 
Sbjct: 592 MHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQ 651

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           SWI++K KV++F  G+  H   +E+Y +L+    Q+
Sbjct: 652 SWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQM 687



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 214/484 (44%), Gaps = 71/484 (14%)

Query: 37  QKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAK----------- 85
           Q++ +  I T S      + +  SV+  F  V D   V   + I  F+            
Sbjct: 51  QQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRAN 110

Query: 86  -QHHY-EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNV 143
             H Y EEA+ ++ RM  L +    FTF  VI +   +    L + +H    ++G Q N+
Sbjct: 111 VAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNL 170

Query: 144 FVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP-- 201
            VG+ ++ +Y K+  +++A +VFE     + VS+ TM+ G         A ++F+ M   
Sbjct: 171 HVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSA 230

Query: 202 --HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
               N+V+W +++  +++ G++ E + LF  M   G+      L   +  + ++AA   G
Sbjct: 231 GLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEG 290

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN--------- 310
           K  H   VK   +  +FV NSLI  Y K G++  + ++F ++  +NIV+WN         
Sbjct: 291 KVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADL 350

Query: 311 ------------------------------AVICGYAQNGRGEEAIEFFERMRINGIRPN 340
                                         AVI G+A  G+GEEA+E F RM++  ++ N
Sbjct: 351 GWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKAN 410

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQA--KLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
            VT+  +L  C     +  G          L D  +L       ++++ ++SG FKE   
Sbjct: 411 SVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNG---LINMYTKSGSFKEGN- 466

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL-----DPEDVSSYVMLSNAL 453
            +++   +  +  W  ++ G  IH    LGE A R    +     +P+ V ++V + +A 
Sbjct: 467 LVFEKIENKDLISWNTMVAGYGIHG---LGENAIRTFDQMIKDGFEPDGV-TFVAVLSAC 522

Query: 454 SVAG 457
           S AG
Sbjct: 523 SHAG 526


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 264/479 (55%), Gaps = 20/479 (4%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA----IYLFSRMLLLNIRPSEFT 110
           S    + H+VF+ + +     +TT+  +  + H   E     + L++RM+     P+EFT
Sbjct: 79  SGNLLNAHKVFERIEN----PSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFT 134

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYI---KLSSIEEATRVFE 167
           +  +I        L  G+Q+H      G  +NVFV +++++LY        + +A RVF+
Sbjct: 135 YSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFD 194

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           +  + N+VS+ +++ G ++    + A ++F EMP RNVVSW  MI G +Q GR ++A++L
Sbjct: 195 EIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHL 254

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL----GKLDVFVGNSLIS 283
           F EM R G+  +   L  A+ A A +  L +G   H+   + L      L V + NSLI 
Sbjct: 255 FHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIH 314

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI---RPN 340
            YA CG ++ +  VF  + +R+ ++W ++I G+A+ G  EEA+  F+ M+  G    RP+
Sbjct: 315 MYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPD 374

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
           G+T +G+L AC+H G V++G  +F     +   + + EHY CMVDLLSR+G   EA    
Sbjct: 375 GITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLX 434

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR-ILALDPEDVSSY-VMLSNALSVAGK 458
             +P  P    W ALLGGC+IH N EL    A++ +L L P+  + Y V+LSN  + A +
Sbjct: 435 ESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKR 494

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           W +V+ +R++M E G+ +  G SW++I   VH FV GD  H     +Y +L   T Q +
Sbjct: 495 WQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAK 553



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 14/265 (5%)

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
           GS+  +    + +   KQ+H      G     F+   +L  YI   ++  A +VFE   N
Sbjct: 35  GSLEETHITCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIEN 94

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNL 227
           P+   +  MI G  + E     ++L+  M       N  +++ +IGG +++    E   +
Sbjct: 95  PSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQV 154

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL---DVFVGNSLISF 284
              ++  G   N       +    N+ A+  G      A +   ++   ++   NSL++ 
Sbjct: 155 HGRVVANGYCTNVFVRTSLV----NLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAG 210

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y +CG ++ +  +FD++ ERN+V+W  +I G AQ GR ++A+  F  MR  G++ + V L
Sbjct: 211 YVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVAL 270

Query: 345 LGLLWACNHTGLVEKG---YSYFSQ 366
           +  L AC   G ++ G   +SY  +
Sbjct: 271 VAALSACAELGDLKLGTWIHSYIDE 295



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 8/202 (3%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           F+   L+SFY   G++ ++  VF+++   +   WN +I G++Q+    + +E + RM   
Sbjct: 67  FLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEA 126

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
              PN  T   L+  C  + L+ +G     +  + +           +V+L + +G +  
Sbjct: 127 EAEPNEFTYSFLIGGCARSXLLREGEQVHGRV-VANGYCTNVFVRTSLVNLYAIAGGYDG 185

Query: 396 AKEF--LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNA 452
            ++   ++D   D  I  W +LL G     +V+     ARRI    PE +V S+  +   
Sbjct: 186 VRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVD----GARRIFDEMPERNVVSWTTMIAG 241

Query: 453 LSVAGKWDNVSNIRREMKEKGM 474
            +  G+     ++  EM+  G+
Sbjct: 242 CAQIGRCKQALHLFHEMRRAGV 263


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/461 (35%), Positives = 251/461 (54%), Gaps = 35/461 (7%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           ++   +FD V +  VV    II  + K  ++ E + +F  ML + +   E T  SV+ + 
Sbjct: 171 AAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTAC 230

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             + D  LGK +  +  + GL  N  + +A++D+Y K                       
Sbjct: 231 GRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAK----------------------- 267

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
              CG L + R     +LF  M  R+VV+W+AMI GY+Q  +  EA+ LF EM    + P
Sbjct: 268 ---CGELGKAR-----RLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEP 319

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           N  T+   + A A + AL  GK  H+   +    L + +G +L+ FYAKCG ++D++  F
Sbjct: 320 NDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAF 379

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           + +  +N  TW A+I G A NGRG EA+E F  MR   I P  VT +G+L AC+H+ LVE
Sbjct: 380 ESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVE 439

Query: 359 KGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           +G  +F  +  +D G +KP  EHY C+VDLL R+G   EA +F+  +P +P    W+ALL
Sbjct: 440 EGRRHF-DSMTQDYG-IKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALL 497

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C +H NVE+GE A ++I++L+P     Y++LSN  +  G+W N + IR+EMK++G+ +
Sbjct: 498 SSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEK 557

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            PGCS IE+   V  F   D +H    EIY  +    ++I+
Sbjct: 558 TPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIK 598



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 152/306 (49%), Gaps = 16/306 (5%)

Query: 193 ALKLFQ--EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIA 249
           A+ LF+    P  +   +N ++      G  E+A++LF+EML    V P+  T+ CA+ +
Sbjct: 69  AVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKS 128

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            + +  L +G+   A AVK     D FV +SLI  YA C  +  + L+FD + E  +V W
Sbjct: 129 CSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMW 188

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           NA+I  Y +NG   E +E F+ M   G+  + +TL+ ++ AC   G  + G   +    +
Sbjct: 189 NAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG--KWVAEYV 246

Query: 370 EDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE-- 426
           ++ G+++  +    ++D+ ++ G   +A+  L+D      +  W A++ G          
Sbjct: 247 DEKGLVRNRNLMTALIDMYAKCGELGKARR-LFDGMQSRDVVAWSAMISGYTQADQCREA 305

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREMKEKGMTRVPGCSW 482
           L  F+  ++  ++P DV+   +LS    +     GKW + S IRR  K   +T + G + 
Sbjct: 306 LALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVH-SYIRR--KRLSLTIILGTAL 362

Query: 483 IEIKSK 488
           ++  +K
Sbjct: 363 VDFYAK 368



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 9/202 (4%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG    +     ++FD +   +VV+ + +I  + +     EA+ LFS M L  + P++ T
Sbjct: 268 CG----ELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVT 323

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             SV+ +   L  L  GK +H++  +  L   + +G+A++D Y K   I++A   FE   
Sbjct: 324 MVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMP 383

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVN 226
             N  ++T +I G+    R  +AL+LF  M   ++    V++  ++   S +   EE   
Sbjct: 384 VKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRR 443

Query: 227 LFIEMLRE-GLVPNHSTLPCAI 247
            F  M ++ G+ P      C +
Sbjct: 444 HFDSMTQDYGIKPRAEHYGCVV 465


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 252/457 (55%), Gaps = 31/457 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VFD +P+ ++V+  +++  + K   ++E + LF ++L L I   + T  SV+ +   L 
Sbjct: 177 HVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLA 236

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +L +G+ +  +    GL+ N  + ++++D+Y K                          C
Sbjct: 237 NLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAK--------------------------C 270

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     + + A KLF EM  R+VV+W+AMI GY+Q  R +EA+NLF EM +  + PN  T
Sbjct: 271 G-----QVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVT 325

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + + A + A   GK  H    K   KL V +G  LI FYAKCG ++ S+ VF +++
Sbjct: 326 MVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMS 385

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +N+ TW A+I G A NG G+ A+EFF  M  N ++PN VT +G+L AC+H  LV++G  
Sbjct: 386 FKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRH 445

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            F+  + +     + EHY CMVD+L R+G  +EA +F+ ++PF P    W+ LL  C+ H
Sbjct: 446 LFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAH 505

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N+E+ E +   I  L+P     Y++LSN  ++ G+ ++   +R  +KEK + ++PGCS 
Sbjct: 506 KNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSL 565

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
           IE+   VH F + D  H  + EI+  L    +QI+  
Sbjct: 566 IELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRL 602



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 8/251 (3%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           +P +         LL  +  + AL +F  +      ++N MI G +     + A+ LF +
Sbjct: 52  DPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKK 111

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  + +  +  T    + A + + AL  G+  HA  +K   K + FV N+LI  YA CG 
Sbjct: 112 MHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQ 171

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  VFD + ER+IV WN+++ GY +NG  +E ++ F ++    I  + VT++ +L A
Sbjct: 172 IGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMA 231

Query: 351 CNHTGLVEKGY---SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C     +E G     Y     L     L       ++D+ ++ G+   A++ L+D     
Sbjct: 232 CGRLANLEIGELIGEYIVSKGLRRNNTLT----TSLIDMYAKCGQVDTARK-LFDEMDKR 286

Query: 408 GIGFWKALLGG 418
            +  W A++ G
Sbjct: 287 DVVAWSAMISG 297


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 250/454 (55%), Gaps = 33/454 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D    + ++FDE+P+ + VS   II  +A        + LF  M  L        + 
Sbjct: 480 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 539

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++  + +L D+++GKQ+HA    +GL S   +G+A++D+Y K                 
Sbjct: 540 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK----------------- 582

Query: 173 NVVSYTTMICGLLKRERFEDALKL-FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                    CG+L      DA K  F     ++ +SW A+I GY Q G++EEA+ LF +M
Sbjct: 583 ---------CGML------DAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDM 627

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
            R GL P+ +T    I A++++A +G+G+  H+  ++   K  VF G+ L+  YAKCG +
Sbjct: 628 RRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCL 687

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +++L  FD++ ERN ++WNAVI  YA  G  + AI+ FE M   G  P+ VT L +L AC
Sbjct: 688 DEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 747

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GL ++   YF   K +       EHYAC++D L R G F + ++ L ++PF      
Sbjct: 748 SHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPII 807

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           W ++L  C+IH N EL   AA ++  ++P D + YV+LSN  + AG+W++ + +++ M++
Sbjct: 808 WTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRD 867

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           +G+ +  G SW+EIK K++ F + D    M DEI
Sbjct: 868 RGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEI 901



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 182/439 (41%), Gaps = 95/439 (21%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S S    +   +F   P  N  + T ++   A      +A+ LF  ML   + P  
Sbjct: 295 LSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDR 354

Query: 109 FTFGSVI--PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
            T  +V+  P  T          LH +A K GL ++VFV + +LD Y K   +  A RVF
Sbjct: 355 VTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVF 407

Query: 167 EDTHNPNVVSYTTMICGLLK--------------------------------RER----- 189
            + H+ + V+Y  M+ G  K                                R R     
Sbjct: 408 LEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVL 467

Query: 190 -----------------FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                             +D  +LF EMP R+ VS+N +I  Y+        + LF EM 
Sbjct: 468 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 527

Query: 233 REGLVPNHSTLPCAII--AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           + G   +   LP A +   A ++  + +GK  HA  V      +  +GN+LI  Y+KCG 
Sbjct: 528 KLGF--DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGM 585

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++ +   F   +E++ ++W A+I GY QNG+ EEA++ F  MR  G+RP+  T   ++ A
Sbjct: 586 LDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKA 645

Query: 351 CN-----------HTGLVEKGY--SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            +           H+ L+  GY  S FS + L              VD+ ++ G   EA 
Sbjct: 646 SSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVL--------------VDMYAKCGCLDEAL 691

Query: 398 EFLYDLPFDPGIGFWKALL 416
               ++P    I  W A++
Sbjct: 692 RTFDEMPERNSIS-WNAVI 709



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 5/187 (2%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           +  A  +F+   + N+ S   ++           A  LF   PHRN  +W  M+  ++  
Sbjct: 273 LHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAA 332

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           GR  +A++LF  ML EG++P+  T    +    N+    +  S H  A+KF     VFV 
Sbjct: 333 GRTSDALSLFRAMLGEGVIPDRVT----VTTVLNLPGCTV-PSLHPFAIKFGLDTHVFVC 387

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N+L+  Y K G +  +  VF ++ +++ VT+NA++ G ++ G   +A++ F  MR  G  
Sbjct: 388 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYS 447

Query: 339 PNGVTLL 345
            + + LL
Sbjct: 448 RHPLHLL 454



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 38/75 (50%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           ++F  N ++S Y+  G +  +  +F     RN  TW  ++  +A  GR  +A+  F  M 
Sbjct: 287 NIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAML 346

Query: 334 INGIRPNGVTLLGLL 348
             G+ P+ VT+  +L
Sbjct: 347 GEGVIPDRVTVTTVL 361


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/445 (36%), Positives = 240/445 (53%), Gaps = 34/445 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFDE P  +  + +++I  FA+      A+  F RML   +RP +  + S   +   L 
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             ++GK +H  A K G   +VFVGS+++D+Y K                          C
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAK--------------------------C 174

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G        DA  LF EMP RNVVSW+ MI GY+Q     EA+ LF + L E +  N  T
Sbjct: 175 G-----EIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFT 229

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               I   ++   L +GK  H   +K       FVG++LIS Y+KCG +E +  VFD++ 
Sbjct: 230 FSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIP 289

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            RN+  WN+++   AQ+   +     FE M   G++PN ++ L +L+AC+H GLVEKG  
Sbjct: 290 TRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGRE 349

Query: 363 YFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YFS   + D G+  + EHYA +VDLL R+G+ +EA   +  +P  P    W ALL GC+I
Sbjct: 350 YFSL--MRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRI 407

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + E+  F A RIL +D      +V+LSNA + AG+++  + +R+ ++++G+ +  G S
Sbjct: 408 HKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLS 467

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIY 506
           W+E  +KVH F  GDR+H    EIY
Sbjct: 468 WVEEGNKVHTFTAGDRSHAKWVEIY 492



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 162/350 (46%), Gaps = 42/350 (12%)

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++ S T    L  G QLHA   K GLQ+   V   +++LY K             T  P
Sbjct: 30  NLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSK-------------TQLP 76

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                               +L++F E P ++  +W+++I  ++Q      A+  F  ML
Sbjct: 77  LF------------------SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRML 118

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            +G+ P+    P A  A   +    +GKS H  AVK     DVFVG+SL+  YAKCG + 
Sbjct: 119 NDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIG 178

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+  +FD++ ERN+V+W+ +I GYAQ   G EA+  F++  I  +  N  T   ++  C+
Sbjct: 179 DARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCS 238

Query: 353 HTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
            +  +E G   +    +   +    +     + ++ L S+ G  + A +   ++P    +
Sbjct: 239 SSTFLELGKLIHGLCLKMSFDSSSFVG----SALISLYSKCGVIEGAYQVFDEIP-TRNL 293

Query: 410 GFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           G W ++L  C  H++ +   G F     + + P  + S++ +  A S AG
Sbjct: 294 GLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFI-SFLSVLYACSHAG 342



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 124/266 (46%), Gaps = 36/266 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D       +FDE+P+ NVVS + +I  +A+     EA+ LF + L+ ++  ++FT
Sbjct: 174 CGEIGD----ARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFT 229

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F SVI   ++   L LGK +H    K+   S+ FVGSA++ LY K               
Sbjct: 230 FSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSK--------------- 274

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                      CG++     E A ++F E+P RN+  WN+M+   +Q    +    LF E
Sbjct: 275 -----------CGVI-----EGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEE 318

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   G+ PN  +    + A ++   +  G+ + +    +  + +     SL+    + G 
Sbjct: 319 MGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGK 378

Query: 291 MEDSLLVFDKLTERNIVT-WNAVICG 315
           +++++ V  ++  R   + W A++ G
Sbjct: 379 LQEAVSVIKQMPMRPTESVWGALLTG 404



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 86/199 (43%), Gaps = 5/199 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+       +QVFDE+P  N+    +++   A+  H +    LF  M  + ++P+ 
Sbjct: 269 ISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNF 328

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            +F SV+ + +    +  G++  +     G++      ++++DL  +   ++EA  V + 
Sbjct: 329 ISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQ 388

Query: 169 T-HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI---GGYSQTGRNEEA 224
               P    +  ++ G    +  E A  +   +   +  S    +     Y+  GR EEA
Sbjct: 389 MPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEA 448

Query: 225 VNLFIEMLREGLVPNHSTL 243
             +  +MLR+  V   + L
Sbjct: 449 ARM-RKMLRDRGVKKETGL 466


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 255/471 (54%), Gaps = 35/471 (7%)

Query: 41   TPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
            +  + T  +S      +      VF+E+   +VVS T ++   A+   ++E   LF RM 
Sbjct: 571  SACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQ 630

Query: 101  LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
            L  + P +FT  + + +  A   L LGK +HA  T++GL++++ V +A+L++Y       
Sbjct: 631  LEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSN----- 685

Query: 161  EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                 CG      + +AL  F+ M  R++VSWN M   Y+Q G 
Sbjct: 686  ---------------------CG-----DWREALSFFETMKARDLVSWNIMSAAYAQAGL 719

Query: 221  NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
             +EAV LF +M  EG+ P+  T    +  +   A +  GK FHA A +     DV V   
Sbjct: 720  AKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATG 779

Query: 281  LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
            L+  YAKCG +++++ +F    +  +V  NA+I   AQ+G  EEA++ F +M+  G+RP+
Sbjct: 780  LVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPD 839

Query: 341  GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKE 398
              TL+ ++ AC H G+VE+G S F   K E  G + P  EHYAC VDLL R+G+ + A++
Sbjct: 840  VATLVSIISACGHAGMVEEGCSSFLTMK-EYFG-ISPTLEHYACFVDLLGRAGQLEHAEQ 897

Query: 399  FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
             +  +PF+     W +LLG C++  + ELGE  A+RIL LDP + +++V+LSN     GK
Sbjct: 898  IIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGK 957

Query: 459  WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            W +    R++M ++ +   PG SW EI  +VH FV GDR+H   DEIY VL
Sbjct: 958  WKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVL 1008



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 195/418 (46%), Gaps = 52/418 (12%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPS 107
           V CGS        H +F ++ + NVVS T +I   A+   +  A  LF  MLL  +  P+
Sbjct: 71  VRCGS----LEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPN 126

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ----SNVFVGSAILDLYIKLSSIEEAT 163
            +T  +++ +     DL +G+ +HA   ++GL+    +   VG+A++++Y K        
Sbjct: 127 SYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAK-------- 178

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR-NE 222
                             CG L     EDA+ +F  +P ++VVSW AM G Y+Q  R   
Sbjct: 179 ------------------CGSL-----EDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYP 215

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           +A+ +F EML + L PN  T    I A     +L  G   H+   +     D    N+LI
Sbjct: 216 DALRIFREMLLQPLAPNVITF---ITALGACTSLRDGTWLHSLLHEASLGFDPLASNALI 272

Query: 283 SFYAKCGSMEDSLLVFDKLTER---NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           + Y KCG  E +  VF  +  R   ++V+WNA+I    + GR  +A+  F R+R+ G+RP
Sbjct: 273 NMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRP 332

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKE 398
           N VTL+ +L A   +G V+ G +     ++ + G L+       ++ + ++ G F  A  
Sbjct: 333 NSVTLITILNALAASG-VDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWA 391

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALS 454
               + +   +  W  +LG  +   +    +  F    +  +DP  V S++ + NA S
Sbjct: 392 VFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKV-SFIAILNACS 448



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 192/422 (45%), Gaps = 40/422 (9%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ +L  C +S  L     +H++     +E + ++   L   A+      CGS  D  + 
Sbjct: 130 LVAMLNACANSRDLAIGRSIHAMIWELGLE-RASTTATLVGNAMINMYAKCGSLEDAIA- 187

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHH-YEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
              VF  +P+ +VVS T + G +A++   Y +A+ +F  MLL  + P+  TF + + + T
Sbjct: 188 ---VFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           +L D   G  LH+   +  L  +    +A++++Y K    E A  VF+            
Sbjct: 245 SLRD---GTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFK------------ 289

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                        A+   QE+   ++VSWNAMI    + GR+ +A+ +F  +  EG+ PN
Sbjct: 290 -------------AMASRQEL---DLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPN 333

Query: 240 HSTLPCAIIA-AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
             TL   + A AA+    G  + FH    +     DV +GN++IS YAKCG    +  VF
Sbjct: 334 SVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVF 393

Query: 299 DKLTER-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            ++  + ++++WN ++          + +  F  M + GI PN V+ + +L AC+++  +
Sbjct: 394 RRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEAL 453

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALL 416
           + G    S         ++      +V +  + G   EA+    ++P     +  W  +L
Sbjct: 454 DFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVML 513

Query: 417 GG 418
           G 
Sbjct: 514 GA 515



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 160/362 (44%), Gaps = 56/362 (15%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + +++ S     DL  GK  H      GL+ ++F+G+ ++++Y++  S+EEA  +F    
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF---- 83

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                       +M  RNVVSW A+I   +Q G    A  LF  
Sbjct: 84  ---------------------------SKMEERNVVSWTALISANAQCGAFARAFALFRT 116

Query: 231 MLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHA----CAVKFLGKLDVFVGNSLISFY 285
           ML E    PN  TL   + A AN   L +G+S HA      ++        VGN++I+ Y
Sbjct: 117 MLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMY 176

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR-GEEAIEFFERMRINGIRPNGVTL 344
           AKCGS+ED++ VF  + E+++V+W A+   YAQ  R   +A+  F  M +  + PN +T 
Sbjct: 177 AKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITF 236

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +  L AC         +S   +A L       P     ++++  + G ++ A      + 
Sbjct: 237 ITALGACTSLRDGTWLHSLLHEASLG----FDPLASNALINMYGKCGDWEGAYSVFKAMA 292

Query: 405 FDPGIGF--WKALLGGCQIHSNVELGE-------FAARRILALDPEDVSSYVMLSNALSV 455
               +    W A+     I ++VE G        F   R+  + P  V+   +L NAL+ 
Sbjct: 293 SRQELDLVSWNAM-----ISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITIL-NALAA 346

Query: 456 AG 457
           +G
Sbjct: 347 SG 348



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 138/306 (45%), Gaps = 37/306 (12%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG     +S V +      +L++VS   +I    +   + +A+ +F R+ L  +RP+  T
Sbjct: 278 CGDWEGAYS-VFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVT 336

Query: 111 FGSVIPSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
             +++ +  A   D    +  H    + G   +V +G+AI+ +Y K              
Sbjct: 337 LITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAK-------------- 382

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNEEAVNLF 228
                       CG      F  A  +F+ +  + +V+SWN M+G         + VN F
Sbjct: 383 ------------CGF-----FSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTF 425

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV-KFLGKLDVFVGNSLISFYAK 287
             ML  G+ PN  +    + A +N  AL  G+  H+  + +    ++  V   L+S Y K
Sbjct: 426 HHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGK 485

Query: 288 CGSMEDSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           CGS+ ++ LVF +  L  R++VTWN ++  YAQN R +EA      M   G+ P+ ++  
Sbjct: 486 CGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFT 545

Query: 346 GLLWAC 351
            +L +C
Sbjct: 546 SVLSSC 551



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 162/348 (46%), Gaps = 42/348 (12%)

Query: 58  FSSVHQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           FS+   VF  +    +V+S  T++G    +  + + +  F  MLL  I P++ +F +++ 
Sbjct: 386 FSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILN 445

Query: 117 SSTALEDLNLGKQLHAWA-TKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
           + +  E L+ G+++H+   T+        V + ++ +Y K  SI EA  VF++       
Sbjct: 446 ACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKE------- 498

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                                   +P R++V+WN M+G Y+Q  R++EA    +EML+ G
Sbjct: 499 ----------------------MPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGG 536

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           ++P+  +    +   ++       +    C ++  G     +  +LIS + +C  +E + 
Sbjct: 537 VLPDALSFTSVL---SSCYCSQEAQVLRMCILES-GYRSACLETALISMHGRCRELEQAR 592

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC---N 352
            VF+++   ++V+W A++   A+N   +E    F RM++ G+ P+  TL   L  C    
Sbjct: 593 SVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLAST 652

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
             GL +  ++  ++  LE    ++      ++++ S  G ++EA  F 
Sbjct: 653 TLGLGKVIHACVTEIGLEADIAVEN----ALLNMYSNCGDWREALSFF 696



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 140/322 (43%), Gaps = 48/322 (14%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C+  ++L L K+  +H+      +E   A    +E   +   S +CG   +  S     F
Sbjct: 648 CLASTTLGLGKV--IHACVTEIGLEADIA----VENALLNMYS-NCGDWREALS----FF 696

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           + +   ++VS   +   +A+    +EA+ LF +M L  ++P + TF + +  S     ++
Sbjct: 697 ETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVS 756

Query: 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
            GK  HA A + GL S+V V + ++ LY K                          CG  
Sbjct: 757 DGKLFHALAAESGLDSDVSVATGLVKLYAK--------------------------CG-- 788

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
              + ++A+ LF+      VV  NA+IG  +Q G +EEAV +F +M +EG+ P+ +TL  
Sbjct: 789 ---KLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVS 845

Query: 246 AIIAAANIAALGMGKSFHACAVKFLG---KLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
            I A  +   +  G S      ++ G    L+ +     +    + G +E +  +  K+ 
Sbjct: 846 IISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYA--CFVDLLGRAGQLEHAEQIIRKMP 903

Query: 303 -ERNIVTWNAVICGYAQNGRGE 323
            E N + W +++      G  E
Sbjct: 904 FEDNTLVWTSLLGTCKLQGDAE 925


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/448 (35%), Positives = 249/448 (55%), Gaps = 38/448 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-SEFTFGSVIPSSTAL 121
           +VF+E+P  N+VS  T+I  F +   Y++AI+ F  +LL N+    E +F SV  +    
Sbjct: 186 KVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANA 245

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            +L  GKQ+H  A K+G+ + V++ +++ D+Y K                          
Sbjct: 246 GNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGK-------------------------- 279

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CGL     F D  KLF     R+VV+WN MI  Y      E+A N F  M R+G +P+ +
Sbjct: 280 CGL-----FNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEA 334

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           +    + + AN+AAL  G   H   ++     ++ V +SLI+ YAKCGS+ D+  +F++ 
Sbjct: 335 SYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEET 394

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            +RN+V W A+I    Q+G     +E FE+M   GI+P+ +T + +L AC+HTG VE+G+
Sbjct: 395 EDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGF 454

Query: 362 SYF-SQAKLED--PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            YF S  K+    PG    EHYAC+VDLLSR+G    AK F+  +P  P    W ALL  
Sbjct: 455 FYFNSMIKVHGIYPGH---EHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSA 511

Query: 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478
           C+ HSN+ +G+  A ++  L+P++  +YV+L N L+  G  +    +RR+M+  G+ + P
Sbjct: 512 CRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEP 571

Query: 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           GCSWI+IK+  +VF   D++H    EIY
Sbjct: 572 GCSWIDIKNSTYVFTVHDKSHEKTKEIY 599



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 188/413 (45%), Gaps = 48/413 (11%)

Query: 57  KFSSVHQ---VFDEVPD--LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           K  SV Q   +F   PD   NVVS T++I +  +     +A+  F+ M    + P+ +TF
Sbjct: 74  KCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTF 133

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            +V+ + T       G+Q+H+   K G  + VFV SA++D+Y K   +  A +VFE+   
Sbjct: 134 SAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPV 193

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            N+VS+ TMI G L+ + ++ A+  F+ +   N+ + + +                    
Sbjct: 194 RNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEV-------------------- 233

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGS 290
                     +      A AN   L  GK  H  A+K LG  + V++ NSL   Y KCG 
Sbjct: 234 ----------SFSSVFSACANAGNLEFGKQVHGVALK-LGVWNLVYINNSLSDMYGKCGL 282

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
             D   +F     R++VTWN +I  Y  N   E+A   F  MR  G  P+  +   +L +
Sbjct: 283 FNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHS 342

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           C +   + +G    +Q  +   G +K    A  ++ + ++ G   +A + +++   D  +
Sbjct: 343 CANLAALYQGTLIHNQ--IIRSGFVKNLRVASSLITMYAKCGSLVDAFQ-IFEETEDRNV 399

Query: 410 GFWKALLGGCQIHSN----VELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
             W A++  CQ H +    VEL E   R    + P D  ++V + +A S  G+
Sbjct: 400 VCWTAIIAACQQHGHANWVVELFEQMLRE--GIKP-DYITFVSVLSACSHTGR 449



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 34/235 (14%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           Q+H+      L S  F+ + +L+LY K  S+++                           
Sbjct: 48  QIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQT-------------------------- 81

Query: 189 RFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                L LF   P   +NVVSW ++I   ++  R  +A+  F  M R G+ PNH T    
Sbjct: 82  -----LLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAV 136

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A  +  A   G+  H+   K     +VFV ++L+  YAKC  M  +  VF+++  RN+
Sbjct: 137 LSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNL 196

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKG 360
           V+WN +I G+ QN   ++AI FF+ + +  +   + V+   +  AC + G +E G
Sbjct: 197 VSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFG 251



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 133/342 (38%), Gaps = 68/342 (19%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F+ V ++F      +VV+   +I  +   H+YE+A   F  M      P E ++ SV+ S
Sbjct: 283 FNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHS 342

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L  L  G  +H    + G   N+ V S+++ +Y K  S+ +A ++FE+T + NVV  
Sbjct: 343 CANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVV-- 400

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
                                         W A+I    Q G     V LF +MLREG+ 
Sbjct: 401 -----------------------------CWTAIIAACQQHGHANWVVELFEQMLREGIK 431

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P++ T    + A ++   +  G                F  NS+I  +      E    +
Sbjct: 432 PDYITFVSVLSACSHTGRVEEG---------------FFYFNSMIKVHGIYPGHEHYACI 476

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-NHTGL 356
            D L+               + G  + A  F E M    I+P+      LL AC NH+ L
Sbjct: 477 VDLLS---------------RAGELDRAKRFIELM---PIKPDASVWGALLSACRNHSNL 518

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           +           LE      P +Y  + ++L+R+G   EA E
Sbjct: 519 IMGKEVALKLFDLEPDN---PGNYVLLCNILTRNGMLNEADE 557


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 256/475 (53%), Gaps = 35/475 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           ++C S     +   +VF E+ +    + VS   +I    +     EA+ LF  M+   ++
Sbjct: 181 LACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLK 240

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
              FT  SV+ + T ++DL  G Q H    K G   N  VGS ++DLY K +        
Sbjct: 241 VDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAG------- 293

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ-TGRNEEA 224
                            G++      +  K+F+E+   ++V WN MI G+SQ    +E+ 
Sbjct: 294 -----------------GMV------ECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDG 330

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLIS 283
           +  F EM   G  P+  +  C   A +N+++  +GK  HA A+K  +    V V N+L++
Sbjct: 331 IWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVA 390

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCG++ D+  VFD + E N+V+ N++I GYAQ+G   E++  FE M    I PN +T
Sbjct: 391 MYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTIT 450

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            + +L AC HTG VE+G  YF+  K       + EHY+CM+DLL R+G+ KEA+  +  +
Sbjct: 451 FIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETM 510

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           PF+PG   W  LLG C+ H NVEL   AA   L L+P + + YVMLSN  + A +W+  +
Sbjct: 511 PFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAA 570

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            ++R M+E+G+ + PGCSWIEI  KVHVFV  D +H M  EI+  +     ++++
Sbjct: 571 TVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQ 625



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 153/353 (43%), Gaps = 35/353 (9%)

Query: 57  KFSSVH---QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           K S +H   QVFDE+P  ++VS  T+I  +A +     A+ LF+ +  L      FT   
Sbjct: 87  KHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSG 146

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           VI +    +D+ L +QLH +    G      V +A+L  Y +   + EA RVF +     
Sbjct: 147 VIIACG--DDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFRE----- 199

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                                    E   R+ VSWNAMI    Q     EAV LF EM+R
Sbjct: 200 -----------------------MGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVR 236

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC-GSME 292
            GL  +  T+   + A   +  L  G  FH   +K     +  VG+ LI  Y+KC G M 
Sbjct: 237 RGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMV 296

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQ-NGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +   VF+++   ++V WN +I G++Q     E+ I  F  M+ NG  P+  + + +  AC
Sbjct: 297 ECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSAC 356

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           ++      G    + A   D    +      +V + S+ G   +A+     +P
Sbjct: 357 SNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMP 409



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 172/357 (48%), Gaps = 22/357 (6%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           TF +++ +  A  DL  GK LHA   K  +  + ++ +    LY K  S+  A   F+ T
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
             PNV SY T+I    K      A ++F E+P  ++VS+N +I  Y+  G    A+ LF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 230 EM--LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF--VGNSLISFY 285
           E+  LR GL  +  TL   IIA  +   +G+ +  H C V   G  D +  V N++++ Y
Sbjct: 131 EVRELRFGL--DGFTLSGVIIACGD--DVGLVRQLH-CFVVVCG-YDCYASVNNAVLACY 184

Query: 286 AKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           ++ G + ++  VF ++ E   R+ V+WNA+I    Q+  G EA+E F  M   G++ +  
Sbjct: 185 SRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMF 244

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSR-SGRFKEAKEFL 400
           T+  +L A      +  G  +     +   G     H    ++DL S+ +G   E ++  
Sbjct: 245 TMASVLTAFTCVKDLVGGMQF--HGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVF 302

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNV-ELGEFAARRIL--ALDPEDVSSYVMLSNALS 454
            ++   P +  W  ++ G   + ++ E G +  R +      P+D  S+V +++A S
Sbjct: 303 EEIA-APDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDC-SFVCVTSACS 357



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 15/236 (6%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVF 65
           C   SS S+ K  ++H+LA    I   + SV      A+      CG+  D      +VF
Sbjct: 356 CSNLSSPSVGK--QVHALAIKSDIPYNRVSVNN----ALVAMYSKCGNVHD----ARRVF 405

Query: 66  DEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125
           D +P+ N+VS  ++I  +A+     E++ LF  ML  +I P+  TF +V+ +      + 
Sbjct: 406 DTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVE 465

Query: 126 LG-KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSYTTMICG 183
            G K  +    +  ++      S ++DL  +   ++EA R+ E    NP  + + T++  
Sbjct: 466 EGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGA 525

Query: 184 LLKRERFEDALKL---FQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
             K    E A+K    F ++   N   +  +   Y+   R EEA  +   M   G+
Sbjct: 526 CRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGV 581


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/469 (32%), Positives = 261/469 (55%), Gaps = 39/469 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS      +   +FD +    VVS  +++  + +    E+AI +F +ML   I P+  T
Sbjct: 296 CGS----VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
               + +   L DL  GK +H +  ++ L S++ V ++++ +Y K   ++ A+ +F + +
Sbjct: 352 IMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLN 411

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                           R  VSWNAMI GY+Q GR  EA+N F E
Sbjct: 412 G-------------------------------RTHVSWNAMILGYAQNGRVSEALNCFSE 440

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   G+ P+  T+   I A A ++     K  H   ++     ++FV  +L+  Y+KCG+
Sbjct: 441 MKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGA 500

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  +FD +++R+++TWNA+I GY  +G G  A++ F++M+   + PN +T L ++ A
Sbjct: 501 IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISA 560

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           C+H+GLV++G  +F   K +D G L+P  +HY  MVDLL R+GR KEA +F+ ++P  PG
Sbjct: 561 CSHSGLVDEGLRHFKSMK-QDYG-LEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPG 618

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           I  + A  G C+IH N+E+GE AA+++  L+P++   +V+L+N  +   KW  V+ +R+ 
Sbjct: 619 ITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKT 678

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M++KG+ + PGCS +E++++VH F +G   H  +  IYA L     +I+
Sbjct: 679 MEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIK 727



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 198/413 (47%), Gaps = 48/413 (11%)

Query: 45  RTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104
           +T  VS  S+    +   +VF+ + D       T++  +AK    E A+    RM   ++
Sbjct: 84  QTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDV 143

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATR 164
           +P  + F  ++       DL  GK++H         +NVF  + ++++Y K   I+    
Sbjct: 144 KPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQID---- 199

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
                                      DA K+F  MP R++VSWN +I G+SQ G  ++A
Sbjct: 200 ---------------------------DAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLIS 283
           + L + M  EG  P+  TL   + AAA++  L +GKS H  A++    KL V +  +L  
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKL-VNISTALAD 291

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCGS+E + L+FD + ++ +V+WN+++ GY QNG  E+AI  FE+M   GI P GVT
Sbjct: 292 MYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVT 351

Query: 344 LLGLLWACNHTGLVEKG---YSYFSQAKL-EDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
           ++  L AC   G +E+G   + +  Q  L  D  ++       ++ + S+  R   A + 
Sbjct: 352 IMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN-----SLISMYSKCKRVDIASDI 406

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLS 450
             +L     +  W A++ G   +  V   L  F+  + L + P+   S+ M+S
Sbjct: 407 FNNLNGRTHVS-WNAMILGYAQNGRVSEALNCFSEMKSLGMKPD---SFTMVS 455



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 5/196 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+  +      +F+ +     VS   +I  +A+     EA+  FS M  L ++P  
Sbjct: 391 ISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDS 450

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  SVIP+   L      K +H    +  L  N+FV +A++D+Y K  +I  A ++F+ 
Sbjct: 451 FTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM 510

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEA 224
             + +V+++  MI G         AL LF +M       N +++ ++I   S +G  +E 
Sbjct: 511 ISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEG 570

Query: 225 VNLFIEMLRE-GLVPN 239
           +  F  M ++ GL P+
Sbjct: 571 LRHFKSMKQDYGLEPS 586


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/474 (32%), Positives = 251/474 (52%), Gaps = 31/474 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           ++T  +S   + D F    +VFD++PD NVVS T II  +    H+ EAI  F ++L + 
Sbjct: 151 VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           ++P  F+   V+ +   L D   G+ +  + +  G+  NVFV +++LD+Y+K        
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK-------- 262

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                             CG L+R        +F  MP +++VSW+ MI GY+  G  ++
Sbjct: 263 ------------------CGNLERANL-----IFSAMPEKDIVSWSTMIQGYAFNGLPQQ 299

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A++LF +M  E L P+  T+   + A A + AL +G    +   +     +  +G +LI 
Sbjct: 300 ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALID 359

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCGS+  +  +F  + +++ V WNA++ G + NG  +     F  +  +GIRP+  T
Sbjct: 360 MYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENT 419

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            +GLL  C H G V +G  +F+  K         EHY CMVDLL R+G   EA + + ++
Sbjct: 420 FIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM 479

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P    W ALLGGC++H +  L E   ++++ L+P +  +YV LSN  S   +W+   
Sbjct: 480 PMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAE 539

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            IR  MKE+ + ++  CSWIEI   VH F+ GD++H ++++IYA L     +++
Sbjct: 540 KIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELK 593



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 178/363 (49%), Gaps = 33/363 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF +V + N+    T+I     +  +++AI+L+  M      P+ FT   V+ +     D
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLD 129

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           + LG ++H+   K G   +VFV +++L LY+K                            
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKC--------------------------- 162

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
               + F+DALK+F ++P +NVVSW A+I GY  +G   EA+  F ++L  GL P+  +L
Sbjct: 163 ----DNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSL 218

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A +     G+             +VFV  SL+  Y KCG++E + L+F  + E
Sbjct: 219 VKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPE 278

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           ++IV+W+ +I GYA NG  ++A++ F +M+   ++P+  T++G+L AC   G ++ G  +
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGI-W 337

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            S     +  +  P     ++D+ S+ G   +A E    +     +  W A++ G  ++ 
Sbjct: 338 ASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRV-VWNAMMVGLSMNG 396

Query: 424 NVE 426
           + +
Sbjct: 397 HAK 399



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 140/302 (46%), Gaps = 35/302 (11%)

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           S  L   N  K +HA   ++ L  + ++ + IL   +   S   +  VF     PN+  +
Sbjct: 23  SNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLW 82

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            TMI GL+ ++ F+DA+ L+            +M GG                    G +
Sbjct: 83  NTMIRGLVSKDCFDDAIHLY-----------GSMRGG--------------------GFL 111

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN+ T+P  + A A    + +G   H+  VK     DVFV  SL+S Y KC + +D+L V
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD + ++N+V+W A+I GY  +G   EAI  F+++   G++P+  +L+ +L AC   G  
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
             G   +    + D GM +    A  ++D+  + G  + A      +P +  I  W  ++
Sbjct: 232 TSG--EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMI 288

Query: 417 GG 418
            G
Sbjct: 289 QG 290



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 35/234 (14%)

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           K  HA  ++     D ++ N ++      GS   S LVF ++ E NI  WN +I G    
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACN-----------HTGLVEKGYSYFSQAK 368
              ++AI  +  MR  G  PN  T+  +L AC            H+ LV+ GY +    K
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG--CQIHSNVE 426
                         ++ L  +   F +A +   D+P D  +  W A++ G     H    
Sbjct: 153 ------------TSLLSLYVKCDNFDDALKVFDDIP-DKNVVSWTAIITGYISSGHFREA 199

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSV----AGKWDNVSNIRREMKEKGMTR 476
           +G F     + L P+  S   +L+    +    +G+W     I R + + GM R
Sbjct: 200 IGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEW-----IDRYISDSGMGR 248


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/429 (35%), Positives = 242/429 (56%), Gaps = 4/429 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD + D ++VS  T+I  +++ + Y+E + LF  M   NI+    T   +I + + L 
Sbjct: 172 KMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 231

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D      +  +  +  L+ +V++G+ ++D+Y + S  E A  VF+     N+VS+  ++ 
Sbjct: 232 DWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVM 291

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G  K      A KLF  MP R+V+SW +MI GYSQ  +  +AV LF EM+   + P+  T
Sbjct: 292 GHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVT 351

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A++  L +G + H    +   + D++VGNSLI  Y KCG +E +L VF ++ 
Sbjct: 352 VASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMK 411

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           +++ V+W +VI G A NG    A++ F +M   G++P   T +G+L AC H GLV KG  
Sbjct: 412 DKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLE 471

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF    +E    L P  +HY C+VDLLSRSG   +A EF+  +P  P +  W+ LL  C+
Sbjct: 472 YFES--MESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACK 529

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H NV L E A +R+L LDP D  +YV+LSN  +   +WD+   +R  M++  + +  G 
Sbjct: 530 LHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGS 589

Query: 481 SWIEIKSKV 489
           S IE+   V
Sbjct: 590 SSIEVDGMV 598



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 211/424 (49%), Gaps = 28/424 (6%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFD 66
           + ++S+S +   +LH+    +LI TQ  +   L +  IR+ S+S    S      H VF+
Sbjct: 23  VSKNSISTDTSKELHA----HLIRTQLHTDPFLMSDVIRSYSLS----STNLHKAHLVFN 74

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
           ++    +V    +I   ++  H  EAI++++RM    I  +  T   +  +   + D+  
Sbjct: 75  QIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVS 134

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+++H  A K+G +S +FV +A++ +Y     +  A ++F+   + ++VS+ T+ICG  +
Sbjct: 135 GRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQ 194

Query: 187 RERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
             ++++ L+LF  M   N+    V+   +I   S  G + E  +  ++ ++E  +     
Sbjct: 195 YNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG-DWEFADSMVKYIKENNLEIDVY 253

Query: 243 LPCAII---AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           L   +I      ++A L  G          + + ++   N+L+  +AK G++  +  +FD
Sbjct: 254 LGNTLIDMYGRRSLAELAQG------VFDRMRERNIVSWNALVMGHAKVGNLTAARKLFD 307

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + +R++++W ++I GY+Q  +  +A++ F+ M    ++P+ VT+  +L AC H G ++ 
Sbjct: 308 NMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDV 367

Query: 360 GYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           G++     +      ++ + Y    ++D+  + G  ++A E  + +     +  W +++ 
Sbjct: 368 GWAVHHYIRRHG---VQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVS-WTSVIS 423

Query: 418 GCQI 421
           G  +
Sbjct: 424 GLAV 427



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 169/371 (45%), Gaps = 51/371 (13%)

Query: 109 FTFGSVIPSSTALE----DLNLGKQLHAWATKVGLQSNVFVGSAILDLY-IKLSSIEEAT 163
           FT  S+ P S  +       +  K+LHA   +  L ++ F+ S ++  Y +  +++ +A 
Sbjct: 11  FTSSSMAPKSGRVSKNSISTDTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAH 70

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
            VF     P +V                                WN MI G SQ+    E
Sbjct: 71  LVFNQIECPTLVV-------------------------------WNHMIRGLSQSDHPVE 99

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A++++  M  +G+  N+ TL     A A ++ +  G+  H  A+K   +  +FV N+LI 
Sbjct: 100 AIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIH 159

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YA CG +  +  +FD + +R++V+WN +ICGY+Q  + +E +  F+ M    I+ + VT
Sbjct: 160 MYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVT 219

Query: 344 LLGLLWACNHTG---LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
           ++ ++ AC+H G     +    Y  +  LE    L       ++D+  R     E  + +
Sbjct: 220 MVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGN----TLIDMYGRRS-LAELAQGV 274

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEF-AARRILALDPE-DVSSYVMLSNALSVAGK 458
           +D   +  I  W AL+ G     + ++G   AAR++    P+ DV S+  +    S A +
Sbjct: 275 FDRMRERNIVSWNALVMG-----HAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQ 329

Query: 459 WDNVSNIRREM 469
           + +   + +EM
Sbjct: 330 FSDAVKLFQEM 340



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 107/205 (52%), Gaps = 31/205 (15%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            ++  ++FD +P  +V+S T++I  +++   + +A+ LF  M+   ++P + T  SV+ +
Sbjct: 299 LTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSA 358

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L  L++G  +H +  + G+Q++++VG++++D+Y K   +E+A  VF    + + VS+
Sbjct: 359 CAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSW 418

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T++I GL                           + G++ +     A++LF +MLREG+ 
Sbjct: 419 TSVISGL--------------------------AVNGFANS-----ALDLFSQMLREGVQ 447

Query: 238 PNHSTLPCAIIAAANIAALGMGKSF 262
           P H T    ++A A+   +  G  +
Sbjct: 448 PTHGTFVGILLACAHAGLVNKGLEY 472


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 177/485 (36%), Positives = 268/485 (55%), Gaps = 43/485 (8%)

Query: 44  IRTDSVSCGSESDKFS------SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97
           +R D+++     + +S      S  ++FDE+P  ++VS  T++G   +    E+A+ LF 
Sbjct: 78  LRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFM 137

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
           +M    I  SEFT  SV+ +  A   +   KQLH +A K  L SNVFVG+A+LD+Y K  
Sbjct: 138 QMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAK-- 195

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
                                   CGL+K     DA  +F+ MP R+ V+W++M+ GY Q
Sbjct: 196 ------------------------CGLVK-----DASLVFECMPERSDVTWSSMVAGYVQ 226

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
               EEA+ LF      GL  N  T+  A+ A A  AAL  GK   A   K     ++FV
Sbjct: 227 NELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFV 286

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            +SLI  YAKCG +E++ +VF  + E+N+V WNA++ G++++ R  EA+ +FE+M+  GI
Sbjct: 287 ISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGI 346

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
            PN +T + +L AC+H GLVEKG  YF    +     P +L   HY+CMVD+L R+G   
Sbjct: 347 CPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVL---HYSCMVDILGRAGLLH 403

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           EAK+ +  +PFD     W +LL  C+I+ N+E  E AA+ +  ++P +  ++V+LSN  +
Sbjct: 404 EAKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYA 463

Query: 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTE 514
              +W+ V+  R  +KE    +  G SWIEIK KVH F+ G+RNH    EIY  L     
Sbjct: 464 ANNRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVG 523

Query: 515 QIREF 519
           ++++ 
Sbjct: 524 EMKKI 528



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 144/297 (48%), Gaps = 35/297 (11%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G   HA   +VGL+++    + ++++Y K   +E A ++F++    ++VS+ T       
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNT------- 118

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                                   M+G ++Q G +E+A+ LF++M +EG+  +  T+   
Sbjct: 119 ------------------------MVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSV 154

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
           + A A    +   K  H  A+K     +VFVG +L+  YAKCG ++D+ LVF+ + ER+ 
Sbjct: 155 VCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSD 214

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           VTW++++ GY QN   EEA+  F R +  G+  N  T+   L AC     + +G     Q
Sbjct: 215 VTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQV--Q 272

Query: 367 AKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           A L   G+       + ++D+ ++ G  +EA   ++    +  +  W A+L G   H
Sbjct: 273 AVLCKTGIGSNIFVISSLIDMYAKCGIIEEAY-IVFSSVEEKNVVLWNAMLSGFSRH 328



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           +A N AA+  G + HA  ++   + D    N L++ Y+KCG +E +  +FD++  R++V+
Sbjct: 57  SARNRAAIE-GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVS 115

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           WN ++  + QNG  E+A+  F +M+  GI  +  T+  ++ AC
Sbjct: 116 WNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCAC 158


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 251/449 (55%), Gaps = 2/449 (0%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           PDL + +  T I   +K      AI+L++R+ +  +RP  ++  SV+ +   L  + +G+
Sbjct: 85  PDLRLYN--TAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGR 142

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           Q+H       L  +V V ++++ +Y     + +A ++F+     +V  +  M+ G +K  
Sbjct: 143 QIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVG 202

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
             + A K+F EMP RNV+SW  +I GY+QT R  EA+ LF +M  E + P+   +   + 
Sbjct: 203 ELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLS 262

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A A++ AL +G+  H    K      V + N+LI  YAK G++  +L VF+ + +++++T
Sbjct: 263 ACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVIT 322

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           W+ VI   A +G G EAI+ F RM    +RPN VT + +L AC+H G+V+ G  YF Q +
Sbjct: 323 WSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQ 382

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
                  K EHY CM+DLL+R+G  +EA++ L+D+PF+     W +LL     H + EL 
Sbjct: 383 SMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELA 442

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
           + A + +  L+P +  +YV+LSN  +  GKW+    +R+ M+  G+ + PG S IEI + 
Sbjct: 443 QLALKHLAKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNI 502

Query: 489 VHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           V+ F+ GD +     EIY VL     Q++
Sbjct: 503 VYEFLAGDMSDSQVHEIYHVLCKIILQLK 531



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 35/262 (13%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A  +F    H ++  +N  I   S+T     A+ L+  +  +GL P+  ++P  + A   
Sbjct: 75  AFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVK 134

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA- 311
           ++A+ +G+  H   V     +DV V  SLI  Y+ CG + D+  +FD +  +++  WNA 
Sbjct: 135 LSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAM 194

Query: 312 ------------------------------VICGYAQNGRGEEAIEFFERMRINGIRPNG 341
                                         +I GYAQ  R  EAIE F +M++  + P+ 
Sbjct: 195 VAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDE 254

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFL 400
           + +L +L AC   G +E G   +    +E  G+ +    Y  ++D+ ++SG  + A E  
Sbjct: 255 IAMLAVLSACADLGALELG--EWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVF 312

Query: 401 YDLPFDPGIGFWKALLGGCQIH 422
            ++     +  W  ++    +H
Sbjct: 313 ENMK-QKSVITWSTVIAALALH 333



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 123/263 (46%), Gaps = 37/263 (14%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +  S  +VF+E+P  NV+S TT+I  +A+ +   EAI LF +M L  + P E    +V+ 
Sbjct: 203 ELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLS 262

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   L  L LG+ +H +  K GL   V + +A++D+Y K  +I  A  VFE+    +V++
Sbjct: 263 ACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVIT 322

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           ++T+I  L                               +  G   EA+++F+ M +  +
Sbjct: 323 WSTVIAAL-------------------------------ALHGLGGEAIDMFLRMEKAKV 351

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFH---ACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            PN  T    + A +++  + +G+ +        K   K++ +    +I   A+ G +++
Sbjct: 352 RPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHY--GCMIDLLARAGYLQE 409

Query: 294 SL-LVFDKLTERNIVTWNAVICG 315
           +  L+ D   E N + W +++  
Sbjct: 410 AQKLLHDMPFEANAMIWGSLLAA 432


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 261/461 (56%), Gaps = 34/461 (7%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           S    +F +   ++VV  T +I  +     Y +++ +F  ++ + I P+E T  S++P  
Sbjct: 392 SMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVI 451

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L  L LG++LH +  K G  +   +G A++D+Y K                       
Sbjct: 452 GILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAK----------------------- 488

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
              CG     R   A ++F+ +  R++VSWN+MI   +Q+     A+++F +M   G+  
Sbjct: 489 ---CG-----RMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICY 540

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  ++  A+ A AN+ +   GK+ H   +K     DV+  ++LI  YAKCG+++ ++ VF
Sbjct: 541 DCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVF 600

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLV 357
             + E+NIV+WN++I     +G+ ++++  F  M   +GIRP+ +T L ++ +C H G V
Sbjct: 601 KTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDV 660

Query: 358 EKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           ++G  +F ++  ED G+  + EHYAC+VDL  R+GR  EA E +  +PF P  G W  LL
Sbjct: 661 DEGVRFF-RSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLL 719

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C++H NVEL E A+ +++ LDP +   YV++SNA + A +W++V+ +R  MKE+ + +
Sbjct: 720 GACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQK 779

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +PG SWIEI  + H+FV+GD NH  +  IY++L S   ++R
Sbjct: 780 IPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELR 820



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 134/295 (45%), Gaps = 31/295 (10%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           E  K     ++FD V   + V    ++  +AK    +  I  FS M +  I P+  TF  
Sbjct: 185 EYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDC 244

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+    +   ++LG QLH      G+     + +++L +Y K                  
Sbjct: 245 VLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSK------------------ 286

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
                   CG     RF+DA KLF+ M   + V+WN MI GY Q+G  EE++  F EM+ 
Sbjct: 287 --------CG-----RFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMIS 333

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G++P+  T    + + +    L   K  H   ++    LD+F+ ++LI  Y KC  +  
Sbjct: 334 SGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSM 393

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           +  +F +    ++V + A+I GY  NG   +++E F  +    I PN +TL+ +L
Sbjct: 394 AQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 134/298 (44%), Gaps = 33/298 (11%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS SD     +++  ++   ++    +II  F +     +A+  + +ML   + P   T
Sbjct: 83  CGSFSDCGKMFYRL--DLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVST 140

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  ++ +  AL++      L    + +G+  N FV S+++  Y++   I+  +       
Sbjct: 141 FPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPS------- 193

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                   KLF  +  ++ V WN M+ GY++ G  +  +  F  
Sbjct: 194 ------------------------KLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSV 229

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  + + PN  T  C +   A+   + +G   H   V      +  + NSL+S Y+KCG 
Sbjct: 230 MRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGR 289

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
            +D+  +F  ++  + VTWN +I GY Q+G  EE++ FF  M  +G+ P+ +T   LL
Sbjct: 290 FDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLL 347



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 134/301 (44%), Gaps = 43/301 (14%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GKQ+HA+     +  + +    IL +Y                           +CG
Sbjct: 51  LRQGKQVHAFLIVNSISGDSYTDERILGMY--------------------------AMCG 84

Query: 184 LLKRERFEDALKLFQEMPHR--NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                 F D  K+F  +  R  ++  WN++I  + + G   +A+  + +ML  G+ P+ S
Sbjct: 85  -----SFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVS 139

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           T PC + A   +     G  F +  V  LG   + FV +SLI  Y + G ++    +FD+
Sbjct: 140 TFPCLVKACVALKNFK-GIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDR 198

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + +++ V WN ++ GYA+ G  +  I+ F  MR++ I PN VT   +L  C    L++ G
Sbjct: 199 VLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLG 258

Query: 361 ---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
              +     + ++  G +K      ++ + S+ GRF +A + L+ +        W  ++ 
Sbjct: 259 VQLHGLVVVSGVDFEGSIKNS----LLSMYSKCGRFDDASK-LFRMMSRADTVTWNCMIS 313

Query: 418 G 418
           G
Sbjct: 314 G 314



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER--NI 306
           A +N   L  GK  HA  +      D +    ++  YA CGS  D   +F +L  R  +I
Sbjct: 44  ACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSI 103

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             WN++I  + +NG   +A+ F+ +M   G+ P+  T   L+ AC
Sbjct: 104 RPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC 148


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/474 (32%), Positives = 250/474 (52%), Gaps = 31/474 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           ++T  +S   + D F    +VFD++PD NVVS T II  +    H+ EAI  F ++L + 
Sbjct: 151 VKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG 210

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           ++P  F+   V+ +   L D   G+ +  + +  G+  NVFV +++LD+Y+K        
Sbjct: 211 LKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK-------- 262

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                             CG L+R        +F  MP +++VSW+ MI GY+  G  ++
Sbjct: 263 ------------------CGNLERANL-----IFSAMPEKDIVSWSTMIQGYAFNGLPQQ 299

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A++LF +M  E L P+  T+   + A A + AL +G    +   +     +  +G +LI 
Sbjct: 300 ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALID 359

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y+KCGS+  +  +F  +  ++ V WNA++ G + NG  +     F  +  +GIRP+  T
Sbjct: 360 MYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENT 419

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            +GLL  C H G V +G  +F+  K         EHY CMVDLL R+G   EA + + ++
Sbjct: 420 FIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM 479

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P    W ALLGGC++H +  L E   ++++ L+P +  +YV LSN  S   +W+   
Sbjct: 480 PMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAE 539

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            IR  MKE+ + ++  CSWIEI   VH F+ GD++H ++++IYA L     +++
Sbjct: 540 KIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELK 593



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 178/363 (49%), Gaps = 33/363 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF +V + N+    T+I     +  +++AI+L+  M      P+ FT   V+ +     D
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLD 129

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           + LG ++H+   K G   +VFV +++L LY+K                            
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKC--------------------------- 162

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
               + F+DALK+F ++P +NVVSW A+I GY  +G   EA+  F ++L  GL P+  +L
Sbjct: 163 ----DNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSL 218

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A +     G+             +VFV  SL+  Y KCG++E + L+F  + E
Sbjct: 219 VKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPE 278

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           ++IV+W+ +I GYA NG  ++A++ F +M+   ++P+  T++G+L AC   G ++ G  +
Sbjct: 279 KDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGI-W 337

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            S     +  +  P     ++D+ S+ G   +A E    +     +  W A++ G  ++ 
Sbjct: 338 ASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRV-VWNAMMVGLSMNG 396

Query: 424 NVE 426
           + +
Sbjct: 397 HAK 399



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 140/302 (46%), Gaps = 35/302 (11%)

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           S  L   N  K +HA   ++ L  + ++ + IL   +   S   +  VF     PN+  +
Sbjct: 23  SNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLW 82

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            TMI GL+ ++ F+DA+ L+            +M GG                    G +
Sbjct: 83  NTMIRGLVSKDCFDDAIHLY-----------GSMRGG--------------------GFL 111

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN+ T+P  + A A    + +G   H+  VK     DVFV  SL+S Y KC + +D+L V
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD + ++N+V+W A+I GY  +G   EAI  F+++   G++P+  +L+ +L AC   G  
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
             G   +    + D GM +    A  ++D+  + G  + A      +P +  I  W  ++
Sbjct: 232 TSG--EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMI 288

Query: 417 GG 418
            G
Sbjct: 289 QG 290



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 35/234 (14%)

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           K  HA  ++     D ++ N ++      GS   S LVF ++ E NI  WN +I G    
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACN-----------HTGLVEKGYSYFSQAK 368
              ++AI  +  MR  G  PN  T+  +L AC            H+ LV+ GY +    K
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG--CQIHSNVE 426
                         ++ L  +   F +A +   D+P D  +  W A++ G     H    
Sbjct: 153 ------------TSLLSLYVKCDNFDDALKVFDDIP-DKNVVSWTAIITGYISSGHFREA 199

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSV----AGKWDNVSNIRREMKEKGMTR 476
           +G F     + L P+  S   +L+    +    +G+W     I R + + GM R
Sbjct: 200 IGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEW-----IDRYISDSGMGR 248


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 145/463 (31%), Positives = 264/463 (57%), Gaps = 5/463 (1%)

Query: 62   HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA- 120
            +QVF E+P+   +     I    +    ++ + LF +M    ++    T   V+ +S + 
Sbjct: 578  NQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISE 637

Query: 121  LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
            L  LN+GK+ H +  + G   +V+VG++++D+Y+K  S+  A  VF++  N N+ ++ ++
Sbjct: 638  LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSL 697

Query: 181  ICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
            + G   +  FEDAL+L  +M       ++V+WN MI GY+  G  +EA+  F +M +EG+
Sbjct: 698  VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGV 757

Query: 237  VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            +PN +++ C + A A+++ L  GK  H  +++     DVFV  +LI  Y+K  S++++  
Sbjct: 758  MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHK 817

Query: 297  VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            VF ++  + + +WN +I G+A  G G+EAI  F  M+  G+ P+ +T   LL AC ++GL
Sbjct: 818  VFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGL 877

Query: 357  VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
            + +G+ YF     +   + + EHY CMVDLL R+G   EA + ++ +P  P    W ALL
Sbjct: 878  IGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALL 937

Query: 417  GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
            G C+IH N++  E AA+ +  L+P + ++Y+++ N  S+  +W+++ ++R  M   G+  
Sbjct: 938  GSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRN 997

Query: 477  VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
                SWI+I  +VHVF + ++ H    +IY  L     ++++ 
Sbjct: 998  RQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKL 1040



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 119/266 (44%), Gaps = 40/266 (15%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
            +   + + T + D+ LG ++H    K G   +V++  A+++ Y +   +E+A +VF + 
Sbjct: 525 VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEM 584

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
            NP  + +   I   L+ E+ +  ++LF++M    + +  A I    Q   +E       
Sbjct: 585 PNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISE------- 637

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
                                  +  L MGK  H   ++     DV+VG SLI  Y K  
Sbjct: 638 -----------------------LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNH 674

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL-- 347
           S+  +  VFD +  RNI  WN+++ GY+  G  E+A+    +M   GI+P+ VT  G+  
Sbjct: 675 SLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMIS 734

Query: 348 ---LWACNHTGLVEKGYSYFSQAKLE 370
              +W C    L     ++F+Q + E
Sbjct: 735 GYAMWGCGKEAL-----AFFAQMQQE 755



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 85/181 (46%), Gaps = 2/181 (1%)

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGY-SQTGRNEEAVNLFI 229
           NP+  +   +I   L    F  A  +F     RN + WN+ +  + S  G     + +F 
Sbjct: 454 NPDAAA-KNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFK 512

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           E+  +G+V +      A+     +  + +G   H C +K    LDV++  +L++FY +C 
Sbjct: 513 ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 572

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            +E +  VF ++     + WN  I    Q+ + ++ +E F +M+ + ++    T++ +L 
Sbjct: 573 GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 632

Query: 350 A 350
           A
Sbjct: 633 A 633


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/445 (36%), Positives = 239/445 (53%), Gaps = 34/445 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFDE P  +  + +++I  FA+      A+  F RML   +RP +  + S   +   L 
Sbjct: 81  QVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLR 140

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
             ++GK +H  A K G   +VFVGS+++D+Y K                          C
Sbjct: 141 RSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAK--------------------------C 174

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G        DA  LF EMP RNVVSW+ MI GY+Q     EA+ LF + L E +  N  T
Sbjct: 175 G-----EIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFT 229

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               I   ++   L +GK  H   +K       FVG++LIS Y+KCG +E +  VFD++ 
Sbjct: 230 FSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIP 289

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            RN+  WN+++   AQ+   +     FE M   G++PN +  L +L+AC+H GLVEKG  
Sbjct: 290 TRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGRE 349

Query: 363 YFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           YFS   + D G+  + EHYA +VDLL R+G+ +EA   +  +P  P    W ALL GC+I
Sbjct: 350 YFSL--MRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRI 407

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H + E+  F A RIL +D      +V+LSNA + AG+++  + +R+ ++++G+ +  G S
Sbjct: 408 HKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLS 467

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIY 506
           W+E  +KVH F  GDR+H    EIY
Sbjct: 468 WVEEGNKVHTFTAGDRSHAKWVEIY 492



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 148/317 (46%), Gaps = 39/317 (12%)

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++ S T    L  G QLHA   K GLQ+   V   +++LY K             T  P
Sbjct: 30  NLLLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSK-------------TQLP 76

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                               +L++F E P ++  +W+++I  ++Q      A+  F  ML
Sbjct: 77  LF------------------SLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRML 118

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            +G+ P+    P A  A   +    +GKS H  AVK     DVFVG+SL+  YAKCG + 
Sbjct: 119 NDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIG 178

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+  +FD++ ERN+V+W+ +I GYAQ   G EA+  F++  I  +  N  T   ++  C+
Sbjct: 179 DARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCS 238

Query: 353 HTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
            +  +E G   +    +   +    +     + ++ L S+ G  + A +   ++P    +
Sbjct: 239 SSTFLELGKLIHGLCLKMSFDSSSFVG----SALISLYSKCGVIEGAYQVFDEIP-TRNL 293

Query: 410 GFWKALLGGCQIHSNVE 426
           G W ++L  C  H++ +
Sbjct: 294 GLWNSMLIACAQHAHTQ 310



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 123/266 (46%), Gaps = 36/266 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D       +FDE+P+ NVVS + +I  +A+     EA+ LF + L+ ++  ++FT
Sbjct: 174 CGEIGD----ARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFT 229

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F SVI   ++   L LGK +H    K+   S+ FVGSA++ LY K               
Sbjct: 230 FSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSK--------------- 274

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                      CG++     E A ++F E+P RN+  WN+M+   +Q    +    LF E
Sbjct: 275 -----------CGVI-----EGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEE 318

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   G+ PN       + A ++   +  G+ + +    +  + +     SL+    + G 
Sbjct: 319 MGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGK 378

Query: 291 MEDSLLVFDKLTERNIVT-WNAVICG 315
           +++++ V  ++  R   + W A++ G
Sbjct: 379 LQEAVSVIKQMPMRPTESVWGALLTG 404



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 5/199 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+       +QVFDE+P  N+    +++   A+  H +    LF  M  + ++P+ 
Sbjct: 269 ISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNF 328

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             F SV+ + +    +  G++  +     G++      ++++DL  +   ++EA  V + 
Sbjct: 329 IXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQ 388

Query: 169 T-HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI---GGYSQTGRNEEA 224
               P    +  ++ G    +  E A  +   +   +  S    +     Y+  GR EEA
Sbjct: 389 MPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEA 448

Query: 225 VNLFIEMLREGLVPNHSTL 243
             +  +MLR+  V   + L
Sbjct: 449 ARM-RKMLRDRGVKKETGL 466


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 255/463 (55%), Gaps = 34/463 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F++    F+ +   ++V+  ++I  +A+      AI +F ++ L  I P   T   V+P+
Sbjct: 481 FTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA 540

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              L DL+ G  +H    K+G +S+  V +A++D+Y K  S+  A  +F  T       +
Sbjct: 541 CALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKT------DF 594

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
           T                        ++ V+WN +I  Y Q G  +EA++ F +M  E   
Sbjct: 595 T------------------------KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 630

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T    + AAA +AA   G +FHAC ++     +  VGNSLI  YAKCG +  S  +
Sbjct: 631 PNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKL 690

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+++  ++ V+WNA++ GYA +G G+ AI  F  M+ + ++ + V+ + +L AC H GLV
Sbjct: 691 FNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLV 750

Query: 358 EKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           E+G   F    + D   +KP  EHYACMVDLL R+G F E   F+  +P +P  G W AL
Sbjct: 751 EEGRKIFHS--MSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGAL 808

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           LG C++HSNV+LGE A   ++ L+P + + +V+LS+  + +G+W +    R +M + G+ 
Sbjct: 809 LGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLK 868

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + PGCSW+E+K+KVH F  GD++H   + ++ +  +  E++ +
Sbjct: 869 KTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEK 911



 Score =  161 bits (407), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 196/401 (48%), Gaps = 42/401 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD++ D + VS  T++  +A    + E + LF +M L N+R ++ +  S   ++    
Sbjct: 284 RVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETI 343

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           DL  GK++H  A +  + S++ V + ++ +Y K                          C
Sbjct: 344 DLEKGKEIHGCALQQRIDSDILVATPLMVMYAK--------------------------C 377

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G       E A +LF  +  R++V+W+A+I    QTG  EEA++LF EM  + + PN  T
Sbjct: 378 G-----ETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVT 432

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   + A A+++ L +GKS H   VK     D+  G +L+S YAKCG    +L  F++++
Sbjct: 433 LMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMS 492

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
            R+IVTWN++I GYAQ G    AI+ F ++R++ I P+  T++G++ AC     +++G  
Sbjct: 493 SRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTC 552

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGG 418
            +    +   E    +K      ++D+ ++ G    A EFL++   F      W  ++  
Sbjct: 553 IHGLIVKLGFESDCHVK----NALIDMYAKCGSLPSA-EFLFNKTDFTKDEVTWNVIIAA 607

Query: 419 CQI--HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
                H+   +  F   R+    P  V+   +L  A  +A 
Sbjct: 608 YMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 33/297 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD  P+ + +   ++I  + +   Y EA+ ++  M+   + P ++TF  V+ + T   +
Sbjct: 85  VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G   H    + GL+ +VF+G+ ++D+Y K+                          G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKM--------------------------G 178

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            LKR R     ++F +MP R+VV+WNAMI G SQ+    EAV+ F  M   G+ P+  +L
Sbjct: 179 DLKRAR-----EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                    ++ + + +S H     F       V N LI  Y+KCG ++ +  VFD++ +
Sbjct: 234 LNLFPGICKLSNIELCRSIHGYV--FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVD 291

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           ++ V+W  ++ GYA NG   E +E F++M++  +R N V+ +    A   T  +EKG
Sbjct: 292 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 33/300 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD++P  +VV+   +I   ++     EA+  F  M L+ + PS  +  ++ P    L 
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLS 244

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           ++ L + +H +  +    S V  G  ++DLY K   ++ A RVF+   + + VS+ TM+ 
Sbjct: 245 NIELCRSIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMA 302

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G      F + L+LF +M   NV                                 N  +
Sbjct: 303 GYAHNGCFVEVLELFDKMKLGNV-------------------------------RINKVS 331

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              A +AAA    L  GK  H CA++     D+ V   L+  YAKCG  E +  +F  L 
Sbjct: 332 AVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ 391

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R++V W+A+I    Q G  EEA+  F+ M+   ++PN VTL+ +L AC    L++ G S
Sbjct: 392 GRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKS 451



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 89/156 (57%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A  +F   P+ + + WN+MI  Y+++ +  EA+ ++  M+ +GL P+  T    + A   
Sbjct: 82  ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTG 141

Query: 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
              L  G  FH    +   + DVF+G  L+  Y+K G ++ +  VFDK+ +R++V WNA+
Sbjct: 142 ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM 201

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           I G +Q+    EA++FF  M++ G+ P+ V+LL L 
Sbjct: 202 IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           +L S + KC        VFD     + + WN++I  Y ++ +  EA+E +  M   G+ P
Sbjct: 71  NLYSLFHKCDLARS---VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEP 127

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKE 398
           +  T   +L AC  TG +      +   +++  G+ +     A +VD+ S+ G  K A+E
Sbjct: 128 DKYTFTFVLKAC--TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRARE 185

Query: 399 FLYDLPFDPGIGFWKALLGG-CQIHSNVELGE-FAARRILALDPEDVS 444
               +P    +  W A++ G  Q     E  + F + +++ ++P  VS
Sbjct: 186 VFDKMPKRDVVA-WNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVS 232


>gi|356551361|ref|XP_003544044.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 688

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 158/454 (34%), Positives = 249/454 (54%), Gaps = 9/454 (1%)

Query: 54  ESDKFSSVHQVFDEVPDLNV----VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           E+       ++FD +    V    +S  ++I  +     ++EA  LF  +L   I P  F
Sbjct: 211 ENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDLLKEGIEPDSF 270

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T GSV+     +  +  GK+ H+ A   GLQSN  VG A++++Y K   I  A   F+  
Sbjct: 271 TLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDIVAAQMAFDGV 330

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAV 225
              ++ ++  +I G  +  + E   +L Q+M       NV +WN +I GY +  + + A+
Sbjct: 331 SERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGYVENKQYDSAM 390

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF EM    L P+  T+   + A + +A +  GK  HA +++     DV +G +L+  Y
Sbjct: 391 QLFTEMQIANLRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMY 450

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           AKCG ++    V++ ++  N+V+ NA++  YA +G GEE I  F RM  + +RP+ VT L
Sbjct: 451 AKCGDVKHCYRVYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRRMLASKVRPDHVTFL 510

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            +L +C H G +E G+   +     +  M   +HY CMVDLLSR+G+  EA E + +LP 
Sbjct: 511 AVLSSCVHAGSLEIGHECLALMVAYNV-MPSLKHYTCMVDLLSRAGQLYEAYELIKNLPT 569

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
           +     W ALLGGC IH+ V+LGE AA +++ L+P +  +YVML+N  + AGKW  ++  
Sbjct: 570 EADAVTWNALLGGCFIHNEVDLGEIAAEKLIELEPNNPGNYVMLANLYASAGKWHYLTQT 629

Query: 466 RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
           R+ MK+ GM + PGCSWIE +  +HVFV  D  H
Sbjct: 630 RQLMKDMGMQKRPGCSWIEDRDGIHVFVAKDIYH 663



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 198/441 (44%), Gaps = 67/441 (15%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL--LNIRPSEFTFGSVI 115
           F +   VFD +P  N+ S T ++  + +   +EEA +LF ++L   + +R   F F  V+
Sbjct: 99  FENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQLLYEGVRVRLDFFVFPVVL 158

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
                L  + LG+Q+H  A K                      ++ A  +F      +  
Sbjct: 159 KICCGLCAVELGRQMHGMALK------------------HDGDMKSAFEMFSRFSRKSAA 200

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEM 231
           SY  MI G  +      A +LF  M    V    +SWN+MI GY      +EA +LF ++
Sbjct: 201 SYNAMIAGYWENGNLFKAKELFDRMEQEGVQKDRISWNSMISGYVDGSLFDEAYSLFRDL 260

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           L+EG+ P+  TL   +   A++A++  GK  H+ A+    + +  VG +L+  Y+KC  +
Sbjct: 261 LKEGIEPDSFTLGSVLAGCADMASIRRGKEAHSLAIVRGLQSNSIVGGALVEMYSKCQDI 320

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             + + FD ++ER++ TWNA+I GYA+  + E+  E  ++MR +G  PN  T  G++   
Sbjct: 321 VAAQMAFDGVSERDLPTWNALISGYARCNQAEKIRELHQKMRRDGFEPNVYTWNGIIAGY 380

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHY------------------------------- 380
                 +     F++ ++ +   L+P+ Y                               
Sbjct: 381 VENKQYDSAMQLFTEMQIAN---LRPDIYTVGIILAACSRLATIQRGKQVHAYSIRAGHD 437

Query: 381 ------ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR 434
                 A +VD+ ++ G  K     +Y++  +P +    A+L    +H + E G    RR
Sbjct: 438 SDVHIGAALVDMYAKCGDVKHCYR-VYNMISNPNLVSHNAMLTAYAMHGHGEEGIALFRR 496

Query: 435 ILA--LDPEDVSSYVMLSNAL 453
           +LA  + P+ V+   +LS+ +
Sbjct: 497 MLASKVRPDHVTFLAVLSSCV 517



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 54/267 (20%)

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
           LL +  PS  T+ S++ S  +     LGKQLHA + K G  ++ FV + +L +Y +  S 
Sbjct: 43  LLYHEPPSSTTYASILDSCGSPI---LGKQLHAHSIKSGFNAHEFVTTKLLQMYARNCS- 98

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
                                         FE+A  +F  MP RN+ SW A++  Y + G
Sbjct: 99  ------------------------------FENACHVFDTMPLRNLHSWTALLRVYIEMG 128

Query: 220 RNEEAVNLFIEMLREGLVP--NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
             EEA  LF ++L EG+    +    P  +     + A+ +G+  H  A+K         
Sbjct: 129 FFEEAFFLFEQLLYEGVRVRLDFFVFPVVLKICCGLCAVELGRQMHGMALK--------- 179

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
                      G M+ +  +F + + ++  ++NA+I GY +NG   +A E F+RM   G+
Sbjct: 180 ---------HDGDMKSAFEMFSRFSRKSAASYNAMIAGYWENGNLFKAKELFDRMEQEGV 230

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYF 364
           + + ++   ++       L ++ YS F
Sbjct: 231 QKDRISWNSMISGYVDGSLFDEAYSLF 257



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG---MGKSFHACAVKFLGK 272
           +++  N  +++L    L   L   +   P +   A+ + + G   +GK  HA ++K    
Sbjct: 21  TRSSSNRASLSLLPSNLNPHLTLLYHEPPSSTTYASILDSCGSPILGKQLHAHSIKSGFN 80

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
              FV   L+  YA+  S E++  VFD +  RN+ +W A++  Y + G  EEA   FE++
Sbjct: 81  AHEFVTTKLLQMYARNCSFENACHVFDTMPLRNLHSWTALLRVYIEMGFFEEAFFLFEQL 140

Query: 333 RINGIR 338
              G+R
Sbjct: 141 LYEGVR 146


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 158/462 (34%), Positives = 246/462 (53%), Gaps = 33/462 (7%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +      VF  +   +VVS T +I          +A+  +  M L  I P E T  SV+ 
Sbjct: 349 RLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLS 408

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   +  L+LG +LH  A K GL S+V V ++++D+Y K   ++ A  VF +    NVVS
Sbjct: 409 ACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS 468

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +T++I GL    R  +AL  F++M                                +E +
Sbjct: 469 WTSLILGLRINNRSFEALLFFRQM--------------------------------KESM 496

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN  TL   + A A I AL  GK  HA A++     D F+ N+++  Y +CG    +L 
Sbjct: 497 KPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALN 556

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F+   ++++  WN ++ GYAQ G+ + A+E F++M    I P+ +T + LL AC+ +G+
Sbjct: 557 QFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGM 615

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V +G  YF+  K +       +HYAC+VD+L R+G+  +A +F+ D+P  P    W ALL
Sbjct: 616 VTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALL 675

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C+IH NVELGE AA+R+   D + V  Y++L N  +  G WD VS +R  M+E+G++ 
Sbjct: 676 NACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSA 735

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            PGCSW+EIK KVH F++GD +H  + EI  VL     +++E
Sbjct: 736 DPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKE 777



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 152/297 (51%), Gaps = 31/297 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF ++ + +V S   ++G +AK   ++EA+ L+ RML   IRP+ +TF SV+ +   + D
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  GK++HA   + G +S+V VG+A++ +Y+K                          CG
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVK--------------------------CG 247

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +   R      LF +MP R+ +SWNAMI GY + G   E + LF  M    + P+  T+
Sbjct: 248 DISNARM-----LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITM 302

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                A   +    +G+  H   VK     D+ + NSLI  Y+  G +E++  VF ++  
Sbjct: 303 TTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMES 362

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +++V+W A+I     +    +A+E ++ M + GI P+ +TL+ +L AC   G ++ G
Sbjct: 363 KDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 191/419 (45%), Gaps = 46/419 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  V CG      S+   +FD++P  + +S   +I  + +     E + LFS M  L
Sbjct: 238 ALITMYVKCGD----ISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMREL 293

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           ++ P   T  +V  +   L++  LG+ +H +  K     ++ + ++++ +Y  L  +EEA
Sbjct: 294 SVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF    + +VVS+T MI  L+             ++P +                   
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVS-----------HKLPFK------------------- 383

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
            AV  +  M  EG++P+  TL   + A A I  L +G   H  A+K      V V NSLI
Sbjct: 384 -AVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLI 442

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y+KC  ++++L VF  ++ +N+V+W ++I G   N R  EA+ FF +M+   ++PN V
Sbjct: 443 DMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSV 501

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM--LKPEHYACMVDLLSRSGRFKEAKEFL 400
           TL+ +L AC   G + +G    + A     G     P     ++D+  R GR   A    
Sbjct: 502 TLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN---AILDMYVRCGRKVPALNQF 558

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD--PEDVSSYVMLSNALSVAG 457
                D  +  W  LL G       +L      ++L L+  P+++ +++ L  A S +G
Sbjct: 559 NSQKKD--VTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEI-TFISLLCACSKSG 614



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 100/160 (62%)

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           DA  +F +M  R+V SWN ++GGY++ G  +EA+NL+  ML   + PN  T P  +   A
Sbjct: 150 DAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCA 209

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            ++ +  GK  HA  ++F  + DV VGN+LI+ Y KCG + ++ ++FDK+ +R+ ++WNA
Sbjct: 210 GVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNA 269

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +I GY +NG G E +E F  MR   + P+ +T+  +  AC
Sbjct: 270 MISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%)

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           L V +GN+L+S + + G++ D+  VF K++ER++ +WN ++ GYA+ G  +EA+  + RM
Sbjct: 130 LCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM 189

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKG 360
               IRPN  T   +L  C     + +G
Sbjct: 190 LWAEIRPNVYTFPSVLKTCAGVSDIARG 217


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 260/472 (55%), Gaps = 2/472 (0%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPS 107
           VS  ++S        +FDE P  ++   ++++   +     E A+ +   ML  + + P 
Sbjct: 127 VSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALHPD 186

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            F   SV      L    LG+QLHA         +  V S+++D+Y K  S ++  +VF+
Sbjct: 187 HFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFD 246

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                N V +T ++ G     R E+AL+LF+ MP RN+ +W A+I G   TG +  AV L
Sbjct: 247 SMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVEL 306

Query: 228 FIEMLREGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           F+EM R+G+ + +   L   I  +A++AA  +G+  H   ++     ++ VGN+LI  Y+
Sbjct: 307 FVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYS 366

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KC  +  +  VF+ +T R++++W  ++ G AQ+GR EEA+  ++RM + G +PN VT +G
Sbjct: 367 KCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVG 426

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           L++AC+H GLV+KG   F   K E     + +HY C +DLLSRSG   EA+E +  +P++
Sbjct: 427 LIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYE 486

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W ALL  C  + + E+    + ++L L P+D S+Y++LSN  +V GKWD+V+ +R
Sbjct: 487 PDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVR 546

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + M    + + PG SWIE   +  +F  G+    + +EI   L     ++R+
Sbjct: 547 KCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRK 598



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           H PN  +   ++    K     DAL LF E P R++  +++++   S +   E A+ +  
Sbjct: 119 HPPNPAA---LVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILR 175

Query: 230 EMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
            ML  + L P+H  +       A + +  +G+  HA  V      D  V +SL+  Y KC
Sbjct: 176 CMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKC 235

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS +D   VFD ++ +N V W A++ GYA NGR EEA++ F  M        G  L    
Sbjct: 236 GSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM-------PGRNLFA-- 286

Query: 349 WACNHTGLVEKGYS 362
           W    +GLV  G S
Sbjct: 287 WTALISGLVNTGES 300


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 173/527 (32%), Positives = 264/527 (50%), Gaps = 72/527 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTFGSVIPSSTALE 122
           VF  +P  +++S  T+I  + +  +  EA+YLF  +L     +P+EF FGSV  + ++L 
Sbjct: 317 VFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLL 376

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN----------- 171
           +L  GKQ+H    K GL+ NVF G ++ D+Y K   +  A   F    N           
Sbjct: 377 ELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIA 436

Query: 172 ------------------------PNVVSYTTMIC------------------------- 182
                                   P+ ++Y +++C                         
Sbjct: 437 AFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDK 496

Query: 183 ------GLL----KRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                  LL    K     DAL +F+++    N+VSWNA++    Q  +  E   L+ EM
Sbjct: 497 EITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEM 556

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
              G  P+  T+   +   A + +LG+G   H  ++K    LDV V N LI  YAKCGS+
Sbjct: 557 HFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSL 616

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           + +  VFD     +IV+W+++I GYAQ G G EA+  F  M   G++PN VT LG L AC
Sbjct: 617 KHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSAC 676

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
           +H GLVE+G+  +   + E       EH++C+VDLL+R+G   EA+ F+     D  I  
Sbjct: 677 SHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITA 736

Query: 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
           WK LL  C+ H+NV++ E  A  IL LDP + ++ VML N  + AG W+ V+ +R+ MK+
Sbjct: 737 WKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQ 796

Query: 472 KGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            G+ +VPG SWIE+K K H+F + D +H   + IY +L     Q+ +
Sbjct: 797 MGVQKVPGQSWIEVKDKFHIFFSEDSSHPQRNLIYTMLEELWSQVLD 843



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 173/375 (46%), Gaps = 47/375 (12%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS  D      +VFD +   NVVS T++I  +++     +AI ++ +M      P + T
Sbjct: 207 CGSMKD----ARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLT 262

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           FGSVI +     D++LG+QLHA   K     ++   +A++ +Y     IE A+ VF    
Sbjct: 263 FGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFT--- 319

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        +P ++++SW  MI GY Q G   EA+ LF +
Sbjct: 320 ----------------------------RIPTKDLISWGTMITGYIQLGYRVEALYLFRD 351

Query: 231 MLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +LR+G   PN         A +++  L  GK  H   VKF  + +VF G SL   YAK G
Sbjct: 352 LLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFG 411

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            +  + + F ++   +IV+WNA+I  +A NG   EAI+FF +M   G+ P+ +T + LL 
Sbjct: 412 FLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLC 471

Query: 350 ACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYAC--MVDLLSRSGRFKEAKEFLYDLP 404
            C     + +G   +SY  +   +       E   C  ++ + ++     +A     D+ 
Sbjct: 472 TCGSPVRLNQGRQIHSYIVKIGFD------KEITVCNSLLTMYTKCSHLHDALNVFRDIS 525

Query: 405 FDPGIGFWKALLGGC 419
            +  +  W A+L  C
Sbjct: 526 RNANLVSWNAILSAC 540



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 150/341 (43%), Gaps = 41/341 (12%)

Query: 83  FAKQHHYEEAIYLFSRMLL---LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
             KQHHY+EA+  F   L     +  PS +T  S++ +      L+  K++H    K   
Sbjct: 133 LCKQHHYKEALEAFDFHLKNSNSHFEPSTYT--SLVLACANFRSLDYAKKIHDHVLKSNY 190

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           Q ++ + + ++++Y K                          CG +K     DA K+F  
Sbjct: 191 QPSIILQNHMINMYGK--------------------------CGSMK-----DARKVFDT 219

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M   NVVSW +MI GYSQ G+  +A+ ++I+M R G  P+  T    I A      + +G
Sbjct: 220 MQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLG 279

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           +  HA  +K      +   N+LIS Y   G +E +  VF ++  +++++W  +I GY Q 
Sbjct: 280 RQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQL 339

Query: 320 GRGEEAIEFF-ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           G   EA+  F + +R    +PN      +  AC  + L+E  Y           G+ +  
Sbjct: 340 GYRVEALYLFRDLLRQGTYQPNEFIFGSVFSAC--SSLLELEYGKQVHGMCVKFGLRRNV 397

Query: 379 HYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              C + D+ ++ G    AK     +  +P I  W A++  
Sbjct: 398 FAGCSLCDMYAKFGFLPSAKMAFCQIK-NPDIVSWNAIIAA 437



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 15/267 (5%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I LLC C S + LN+  ++HS       + +      L T   +     C    D  +  
Sbjct: 467 ISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYTK-----CSHLHDALN-- 519

Query: 62  HQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             VF ++  + N+VS   I+    ++    E   L+  M     +P   T  +++ +   
Sbjct: 520 --VFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAE 577

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L  L +G Q+H ++ K GL  +V V + ++D+Y K  S++ A  VF+ T N ++VS++++
Sbjct: 578 LTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSL 637

Query: 181 ICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-G 235
           I G  +     +AL LF+ M +  V    V++   +   S  G  EE   L+  M  E G
Sbjct: 638 IVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEHG 697

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSF 262
           + P      C +   A    L   ++F
Sbjct: 698 IPPTREHFSCIVDLLARAGCLHEAETF 724



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 1/186 (0%)

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           ST    ++A AN  +L   K  H   +K   +  + + N +I+ Y KCGSM+D+  VFD 
Sbjct: 160 STYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDT 219

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +   N+V+W ++I GY+QNG+  +AI  + +M  +G  P+ +T   ++ AC   G ++ G
Sbjct: 220 MQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLG 279

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
               +       G       A ++ + +  G+ + A      +P    I +   + G  Q
Sbjct: 280 RQLHAHVIKSWFGHHLTSQNA-LISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQ 338

Query: 421 IHSNVE 426
           +   VE
Sbjct: 339 LGYRVE 344


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 245/449 (54%), Gaps = 35/449 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D     H +F+ +P  +V+  + +I R+A+    E+A  +F RM+   + P+EF+
Sbjct: 297 CGDIED----AHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFS 352

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              V+ +   +  L LG+Q+H  A K+G +S +FVG+A++D+Y K  ++E          
Sbjct: 353 LSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNME---------- 402

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                ++L++F  +   N VSWN +I GY Q+G  E+A+++F E
Sbjct: 403 ---------------------NSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHE 441

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M    ++    T    + A AN +++      H+   K     D  V NSLI  YAKCG 
Sbjct: 442 MRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGF 501

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + D+L VF+ + E ++V+WN++I  YA +GR   A+E F+RM  + I+ N VT + LL  
Sbjct: 502 IRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSV 561

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           C  TGLV +G   F+   ++       EHY C+V LL R+GR  +A +F+ D+P  P   
Sbjct: 562 CGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPM 621

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W+ALL  C +H NV LG +AA ++L ++P D ++YV+LSN  + AG  D V+  R+ M+
Sbjct: 622 VWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMR 681

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNH 499
             G+ +  G SW+EIK +VH F  G  +H
Sbjct: 682 NVGVKKEAGLSWVEIKGEVHAFSVGSADH 710



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 151/303 (49%), Gaps = 31/303 (10%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            ++  ++FD +P+ N VS  T++  +A +  +EEA+ LF R+       + F   +++  
Sbjct: 98  LATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKV 157

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
              ++   L   +HA A K+G   N FVG+A++D Y                        
Sbjct: 158 LVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAY------------------------ 193

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
              +CG +   R      +F  +  ++ V+W AM+  YS+    E A+N F +M   G  
Sbjct: 194 --SLCGAVCHARC-----VFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFK 246

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN   L  A+ AA  +++  +GK  H C+VK L   +  VG +L+  YAKCG +ED+  +
Sbjct: 247 PNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAI 306

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ +   +++ W+ +I  YAQ+ + E+A E F RM  + + PN  +L G+L AC +   +
Sbjct: 307 FEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFL 366

Query: 358 EKG 360
           E G
Sbjct: 367 ELG 369



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 132/298 (44%), Gaps = 39/298 (13%)

Query: 123 DLNLGKQLHAWATKVG--LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           D   G+ +HA   + G   Q + F  + +L+ Y KL  +  A R+F+     N VS+ T+
Sbjct: 60  DARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTL 119

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           + G   R  FE+AL+LF+ +                                REG   NH
Sbjct: 120 MQGYALRGEFEEALELFRRLQ-------------------------------REGHEVNH 148

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
             L   +     + A G+    HACA K     + FVG +LI  Y+ CG++  +  VFD 
Sbjct: 149 FVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDG 208

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA--CNHTGLVE 358
           +  ++ VTW A++  Y++N   E A+  F +MR+ G +PN   L   L A  C  + L+ 
Sbjct: 209 IVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLG 268

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           KG    S   L D    +P     ++D+ ++ G  ++A      +P D  I  W  L+
Sbjct: 269 KGIHGCSVKTLYDT---EPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVI-LWSFLI 322


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 247/456 (54%), Gaps = 34/456 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF  + D  +VS T+II  +A+     EA+ +FS M   N+RP      SV+ + T +ED
Sbjct: 230 VFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVED 289

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK +H    K+GL+    +  ++  LY K   +  A   F    NP+++        
Sbjct: 290 LEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIF------- 342

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                                   WNAMI GY + G  EEA+ LF  M  + + P+  T+
Sbjct: 343 ------------------------WNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITV 378

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
             +I A A I +L + +           + DV V  SLI  YAKCGS++ +  VFD++ +
Sbjct: 379 TSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPD 438

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +++V W+A++ GY  +G+G E+I  F  MR  G+ PN VT +GLL AC ++GLVE+G+  
Sbjct: 439 KDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDL 498

Query: 364 FSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           F   ++ D G+  + +HYAC+VDLL R+G    A  F+ ++P +PG+  W ALL  C+IH
Sbjct: 499 FH--RMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIH 556

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            +V LGE+AA R+ +LDP +   YV LSN  + +  WD V+ +R  M+EKG+T+  G S 
Sbjct: 557 RHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSV 616

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           IEI  K+  F  GD+ H  + EI+  +     +++E
Sbjct: 617 IEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKE 652



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 207/432 (47%), Gaps = 44/432 (10%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  S   + S   ++FD+ PD +V     I+  +++   +  AI +++RM +  + P  
Sbjct: 114 VNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDG 173

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           F+F  V+ + +AL  L +G+++H    + G +S+VFV + ++ LY K   I  A  VF  
Sbjct: 174 FSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGR 233

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV-VSWNAMIGGYSQTGRNEEAVNL 227
             +  +VS+T++I G  +  +  +AL++F EM   NV   W A+                
Sbjct: 234 LVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIAL---------------- 277

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
            + +LR               A  ++  L  GKS H C +K   + +  +  SL S YAK
Sbjct: 278 -VSVLR---------------AYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAK 321

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG +  + L F+++   +++ WNA+I GY +NG  EEAIE F  M+   IRP+ +T+   
Sbjct: 322 CGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSS 381

Query: 348 LWACNHTGLVEKGY---SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           + AC   G +E       Y S ++  +  ++       ++D  ++ G    A+ F++D  
Sbjct: 382 IAACAQIGSLELARWMDEYISMSEFRNDVIVNTS----LIDTYAKCGSVDMAR-FVFDRI 436

Query: 405 FDPGIGFWKALLGGCQIHSN--VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
            D  +  W A++ G  +H      +  F A R   + P DV ++V L  A   +G  +  
Sbjct: 437 PDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDV-TFVGLLTACKNSGLVEEG 495

Query: 463 SNIRREMKEKGM 474
            ++   M++ G+
Sbjct: 496 WDLFHRMRDYGI 507



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           F+   L++  +  G +  +  +FDK  + ++  WNA++  Y+++G    AIE + RM++ 
Sbjct: 108 FLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVA 167

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
            + P+G +   +L AC+    +E G     Q
Sbjct: 168 CVSPDGFSFPCVLKACSALPALEMGRRVHGQ 198


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 158/477 (33%), Positives = 262/477 (54%), Gaps = 12/477 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IR 105
           VS  + S       + FD+ P  DL++ SA  ++   +     E  + L  RML  + +R
Sbjct: 43  VSAYARSCLLPDARRAFDDAPRRDLHLYSA--LLAAVSHSSDPELVLPLLRRMLSDDALR 100

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P  F   S+  ++  L  L LG+QLHA        ++  V S+++D+Y K    ++A +V
Sbjct: 101 PDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKV 160

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F+     N V +T +I G        +AL LFQ MP   + +W A+I G+ + G    A+
Sbjct: 161 FDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAM 220

Query: 226 NLFIEMLREGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
            LF+EM R+ + + +   L   I  AA++AAL +G+  H   ++      + VGN+L+  
Sbjct: 221 GLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDM 280

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y+KC  +  +  VF+ +T R++++W  ++ G AQ+GR EE    + RM + G++PN VT 
Sbjct: 281 YSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTF 340

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
           +GL++AC+H GLV+KG   F   K E    PG+   +HY C +DLLSRSG   EA++ + 
Sbjct: 341 VGLIYACSHAGLVQKGRQLFDSMKREYGMKPGV---QHYTCYLDLLSRSGYLSEAEKLIT 397

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
            +P++P    W ALL  C+ H++ ++    A  +L L P+D S+Y++LSN  +V  KWD+
Sbjct: 398 TMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDS 457

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           V+ +R+ M E  + +VPG SW+E   +  +F  G+    + +EI   L     ++R+
Sbjct: 458 VAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCFLEELVSEMRK 514



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 32/229 (13%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +++HA   K GL       + ++  Y +   + +A R F+D                   
Sbjct: 21  RRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDA------------------ 62

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCA 246
                        P R++  ++A++   S +   E  + L   ML  + L P+H  L   
Sbjct: 63  -------------PRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRPDHFVLASL 109

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
             AA  + +L +G+  HA         D  V +SLI  Y KCG  +D+  VFD +  +N 
Sbjct: 110 ASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNS 169

Query: 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           V W A+I GYA NG   EA++ F+ M  +G+      + G + A N+TG
Sbjct: 170 VVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTG 218


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 158/462 (34%), Positives = 246/462 (53%), Gaps = 33/462 (7%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +      VF  +   +VVS T +I          +A+  +  M L  I P E T  SV+ 
Sbjct: 349 RLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLS 408

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   +  L+LG +LH  A K GL S+V V ++++D+Y K   ++ A  VF +    NVVS
Sbjct: 409 ACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS 468

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +T++I GL    R  +AL  F++M                                +E +
Sbjct: 469 WTSLILGLRINNRSFEALLFFRQM--------------------------------KESM 496

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN  TL   + A A I AL  GK  HA A++     D F+ N+++  Y +CG    +L 
Sbjct: 497 KPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALN 556

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
            F+   ++++  WN ++ GYAQ G+ + A+E F++M    I P+ +T + LL AC+ +G+
Sbjct: 557 QFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGM 615

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           V +G  YF+  K +       +HYAC+VD+L R+G+  +A +F+ D+P  P    W ALL
Sbjct: 616 VTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALL 675

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
             C+IH NVELGE AA+R+   D + V  Y++L N  +  G WD VS +R  M+E+G++ 
Sbjct: 676 NACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSA 735

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            PGCSW+EIK KVH F++GD +H  + EI  VL     +++E
Sbjct: 736 DPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKE 777



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 152/297 (51%), Gaps = 31/297 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF ++ + +V S   ++G +AK   ++EA+ L+ RML   IRP+ +TF SV+ +   + D
Sbjct: 154 VFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSD 213

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  GK++HA   + G +S+V VG+A++ +Y+K                          CG
Sbjct: 214 IARGKEIHAHVIRFGFESDVDVGNALITMYVK--------------------------CG 247

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            +   R      LF +MP R+ +SWNAMI GY + G   E + LF  M    + P+  T+
Sbjct: 248 DISNARM-----LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITM 302

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
                A   +    +G+  H   VK     D+ + NSLI  Y+  G +E++  VF ++  
Sbjct: 303 TTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMES 362

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +++V+W A+I     +    +A+E ++ M + GI P+ +TL+ +L AC   G ++ G
Sbjct: 363 KDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 191/419 (45%), Gaps = 46/419 (10%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  V CG      S+   +FD++P  + +S   +I  + +     E + LFS M  L
Sbjct: 238 ALITMYVKCGD----ISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMREL 293

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           ++ P   T  +V  +   L++  LG+ +H +  K     ++ + ++++ +Y  L  +EEA
Sbjct: 294 SVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF    + +VVS+T MI  L+             ++P +                   
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVS-----------HKLPFK------------------- 383

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
            AV  +  M  EG++P+  TL   + A A I  L +G   H  A+K      V V NSLI
Sbjct: 384 -AVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLI 442

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             Y+KC  ++++L VF  ++ +N+V+W ++I G   N R  EA+ FF +M+   ++PN V
Sbjct: 443 DMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK-ESMKPNSV 501

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM--LKPEHYACMVDLLSRSGRFKEAKEFL 400
           TL+ +L AC   G + +G    + A     G     P     ++D+  R GR   A    
Sbjct: 502 TLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN---AILDMYVRCGRKVPALNQF 558

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD--PEDVSSYVMLSNALSVAG 457
                D  +  W  LL G       +L      ++L L+  P+++ +++ L  A S +G
Sbjct: 559 NSQKKD--VTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEI-TFISLLCACSKSG 614



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/160 (38%), Positives = 100/160 (62%)

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           DA  +F +M  R+V SWN ++GGY++ G  +EA+NL+  ML   + PN  T P  +   A
Sbjct: 150 DAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCA 209

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
            ++ +  GK  HA  ++F  + DV VGN+LI+ Y KCG + ++ ++FDK+ +R+ ++WNA
Sbjct: 210 GVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNA 269

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
           +I GY +NG G E +E F  MR   + P+ +T+  +  AC
Sbjct: 270 MISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 53/88 (60%)

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
           L V +GN+L+S + + G++ D+  VF K++ER++ +WN ++ GYA+ G  +EA+  + RM
Sbjct: 130 LCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM 189

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKG 360
               IRPN  T   +L  C     + +G
Sbjct: 190 LWAEIRPNVYTFPSVLKTCAGVSDIARG 217


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 243/439 (55%), Gaps = 33/439 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF  +P+ +VVS   +I  ++ Q++ EEA+ LF  ML   + PSE TF +++ +    E
Sbjct: 585 KVFSSMPEWSVVSMNALIAGYS-QNNLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPE 643

Query: 123 DLNLGKQLHAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            L LG Q H    K G  S   ++G ++L LY+    + EA  +F +  +P         
Sbjct: 644 SLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSP--------- 694

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
                                +++V W  M+ G+SQ G  EEA+  + EM  +G +P+ +
Sbjct: 695 ---------------------KSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQA 733

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    +   + +++L  G++ H+        LD    N+LI  YAKCG M+ S  VFD++
Sbjct: 734 TFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEM 793

Query: 302 TER-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
             R N+V+WN++I GYA+NG  E+A++ F+ MR + I P+ +T LG+L AC+H G V  G
Sbjct: 794 RRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDG 853

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              F     +     + +H ACMVDLL R G  +EA +F+      P    W +LLG C+
Sbjct: 854 RKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACR 913

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH +   GE AA R++ L+P++ S+YV+LSN  +  G+W+  + +R+ M+++G+ +VPG 
Sbjct: 914 IHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKKVPGY 973

Query: 481 SWIEIKSKVHVFVTGDRNH 499
           SWI++  + H+F  GD++H
Sbjct: 974 SWIDVGQRRHIFAAGDQSH 992



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 173/353 (49%), Gaps = 43/353 (12%)

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           I P++FTF  V+ +S    ++  G+Q+H    K+GL+ N + G A++D+Y K   + +A 
Sbjct: 156 IFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQ 215

Query: 164 RVFEDTHNPNVVSYTTMICGLLK------------RERFE-------------------- 191
           RVF+   +PN V +T +  G +K            R R E                    
Sbjct: 216 RVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLG 275

Query: 192 ---DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
              DA  LF EMP  +VV+WN MI G+ + G    A+  F+ M +  +    STL   + 
Sbjct: 276 KLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLS 335

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A   +A L +G   HA A+K     +++VG+SL+S Y+KC  ME +  VF+ L ERN V 
Sbjct: 336 AIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVL 395

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS--- 365
           WNA+I GYA NG   + +E F  M+ +G   +  T   LL  C  +  +E G  + S   
Sbjct: 396 WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIII 455

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           + KL     +       +VD+ ++ G  ++A++ +++   D     W  ++GG
Sbjct: 456 KKKLTKNLFVGN----ALVDMYAKCGALEDARQ-IFEHMCDRDNVSWNTIIGG 503



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 172/350 (49%), Gaps = 36/350 (10%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K      +F E+P  +VV+   +I    K+     AI  F  M   +++ +  T GSV+ 
Sbjct: 276 KLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLS 335

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +   + +L+LG  +HA A K+GL SN++VGS+++ +Y K                     
Sbjct: 336 AIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKC-------------------- 375

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                      E+ E A K+F+ +  RN V WNAMI GY+  G + + + LF++M   G 
Sbjct: 376 -----------EKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGY 424

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
             +  T    +   A    L MG  FH+  +K     ++FVGN+L+  YAKCG++ED+  
Sbjct: 425 NIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQ 484

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-NHTG 355
           +F+ + +R+ V+WN +I GY Q+    EA + F RM   GI  +G  L   L AC N  G
Sbjct: 485 IFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHG 544

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLP 404
           L +    +    K    G+ +  H  + ++D+ S+ G  ++A++    +P
Sbjct: 545 LYQGKQVHCLSVKC---GLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMP 591



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 135/514 (26%), Positives = 232/514 (45%), Gaps = 86/514 (16%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           VS  S+ +K  +  +VF+ + + N V    +I  +A      + + LF  M        +
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDD 428

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FTF S++ +     DL +G Q H+   K  L  N+FVG+A++D+Y K             
Sbjct: 429 FTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAK------------- 475

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                        CG L     EDA ++F+ M  R+ VSWN +IGGY Q     EA +LF
Sbjct: 476 -------------CGAL-----EDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLF 517

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288
           + M   G+V + + L   + A  N+  L  GK  H  +VK      +  G+SLI  Y+KC
Sbjct: 518 MRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKC 577

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G +ED+  VF  + E ++V+ NA+I GY+QN   EEA+  F+ M   G+ P+ +T   ++
Sbjct: 578 GIIEDARKVFSSMPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATIV 636

Query: 349 WACN-----------HTGLVEKGYS-------------YFSQAKLEDPGMLKPE------ 378
            AC+           H  +++ G+S             Y +  ++ +   L  E      
Sbjct: 637 EACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKS 696

Query: 379 --HYACMVDLLSRSGRFKEAKEFLYDLPFD---PGIGFWKALLGGCQIHSNVELGEFAAR 433
              +  M+   S++G ++EA +F  ++  D   P    +  +L  C + S++  G     
Sbjct: 697 IVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHS 756

Query: 434 RI--LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI------ 485
            I  LA D ++++S  ++ +  +  G   + S +  EM+ +        SW  +      
Sbjct: 757 LIFHLAHDLDELTSNTLI-DMYAKCGDMKSSSQVFDEMRRRSNV----VSWNSLINGYAK 811

Query: 486 ----KSKVHVFVTGDRNHHMNDEI--YAVLRSCT 513
               +  + +F +  ++H M DEI    VL +C+
Sbjct: 812 NGYAEDALKIFDSMRQSHIMPDEITFLGVLTACS 845



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 45/264 (17%)

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           +P   AL  L +GK +H+ +  +G+ S   +G+AI+DLY K + +  A + F        
Sbjct: 68  MPHRLALA-LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLE---- 122

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
                                       ++V +WN+M+  YS  G+  + +  F+ +   
Sbjct: 123 ----------------------------KDVTAWNSMLSMYSSIGQPGKVLRSFVSLFEN 154

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
            + PN  T    +  +A    +  G+  H   +K   + + + G +L+  YAKC  + D+
Sbjct: 155 LIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDA 214

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VFD + + N V W  +  GY + G  EEA+  FERMR  G RP            +H 
Sbjct: 215 QRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRP------------DHL 262

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPE 378
             V    +Y S  KL+D  +L  E
Sbjct: 263 AFVTVINTYISLGKLKDARLLFGE 286


>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
 gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 171/465 (36%), Positives = 260/465 (55%), Gaps = 16/465 (3%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI------P 116
           Q  ++    N VS T+ I    +     EA   FS M L  + P+  TF +++      P
Sbjct: 26  QRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFP 85

Query: 117 S-STALEDLNLGKQLHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           S S AL DL     LH +A K+GL  N V VG+AI+ +Y K   +++A  VF+   + N 
Sbjct: 86  SGSEALGDL-----LHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNS 140

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           V++ TMI G ++  + ++A K+F +MP R+++SW AMI G+   G +EEA+  F EM   
Sbjct: 141 VTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQIS 200

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294
           G+ P++  +  A+ A  N+ AL  G   H   +    K +V V NSLI  Y +CG +E +
Sbjct: 201 GVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFA 260

Query: 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
             VFDK+ +R +V+WN+VI G+A NG   E++ +F +M+    +P+ VT  G L AC+H 
Sbjct: 261 RQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHV 320

Query: 355 GLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           GLVE+G  YF Q  + D  +  + EHY C+VDL SR+GR ++A + +  +P  P      
Sbjct: 321 GLVEEGLRYF-QIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIG 379

Query: 414 ALLGGCQIH-SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           +LL  C+ H +N  L E   + +  L+ +  S+YV+LSN  +  GKW+  S +RR+MK  
Sbjct: 380 SLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGL 439

Query: 473 GMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           G+ + PG S IEI    HVF+ GD  H     I  VL+  +  +R
Sbjct: 440 GLKKQPGFSSIEIDDCTHVFMAGDSAHVETTNICEVLKLISSNLR 484



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 35/213 (16%)

Query: 183 GLLKRERFED-ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            L+ R+R  +  ++   +    N VSW + I   ++ GR  EA   F +M   G+ PNH 
Sbjct: 13  ALITRKRHANPKIQRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHI 72

Query: 242 TLPCAIIAAANI--AALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAK----------- 287
           T    +    +    +  +G   H  A K  L +  V VG ++I  Y+K           
Sbjct: 73  TFIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVF 132

Query: 288 --------------------CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
                                G ++++  +FDK+ ER++++W A+I G+   G  EEA+ 
Sbjct: 133 DYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALA 192

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +F  M+I+G++P+ V ++  L AC + G +  G
Sbjct: 193 WFREMQISGVKPDYVAIIAALNACTNLGALSFG 225



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 145/350 (41%), Gaps = 73/350 (20%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
            S +  +  ++FD++P+ +++S T +I  F  +  +EEA+  F  M +  ++P      +
Sbjct: 152 RSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIA 211

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + + T L  L+ G  +H +      ++NV V ++++DLY +   +E A +VF+      
Sbjct: 212 ALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRT 271

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS+                               N++I G++  G   E++  F +M  
Sbjct: 272 VVSW-------------------------------NSVIVGFAANGNAHESLVYFRKMQE 300

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
           E   P+  T   A+ A +++  +  G  +                               
Sbjct: 301 ERFKPDAVTFTGALTACSHVGLVEEGLRYF------------------------------ 330

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-- 351
            +++ D      I  +  ++  Y++ GR E+A++  + M    ++PN V +  LL AC  
Sbjct: 331 QIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM---PMKPNEVVIGSLLAACRN 387

Query: 352 --NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
             N+T L EK   +     L D  +    +Y  + ++ +  G+++ A + 
Sbjct: 388 HGNNTVLAEKLMKH-----LTDLNVKSHSNYVILSNMYAADGKWEGASKM 432


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 152/457 (33%), Positives = 261/457 (57%), Gaps = 10/457 (2%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ++ + +   ++FDE+PD +VV+ T ++  + +     EA  LF  M   N+     ++ +
Sbjct: 155 DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTA 210

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           +I       ++NL ++L     +V  + N    +A+L  YI+   +E+A  +F       
Sbjct: 211 MISGYAQNGEVNLARKLF----EVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHP 266

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V +   M+ G  +R   + A  +F++M  R+  +W+AMI  Y Q     EA++ F EML 
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+ PN+ ++   +   A +A L  G+  HA  ++    +DVF  ++LI+ Y KCG+++ 
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VF     ++IV WN++I GYAQ+G GE+A+  F  MR+ G+ P+G+T +G L AC++
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           TG V++G   F+   +        EHY+CMVDLL RSG  +EA + + ++P +P    W 
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           AL+G C++H N E+ EFAA+++L L+P +   YV+LS+  +  G+W++ S +R+ +  + 
Sbjct: 507 ALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRN 566

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           + + PGCSWIE   +VH+F +GD   H   E  A+LR
Sbjct: 567 LNKSPGCSWIEYDKRVHLFTSGDVLAH--PEHAAILR 601



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 193/424 (45%), Gaps = 44/424 (10%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+ +P     S   ++  + +    + A+ LF RM   ++     ++ ++I S  +L   
Sbjct: 40  FEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA----SYNALI-SGLSLRRQ 94

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            L     A A+ +    +V   +++L  Y++   + +A R+F+     N VSYT ++ GL
Sbjct: 95  TLPDAAAALAS-IPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGL 153

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           L   R  +A +LF EMP R+VV+W AM+ GY Q GR  EA  LF EM +  +V    +  
Sbjct: 154 LDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV----SWT 209

Query: 245 CAIIAAANIAALGMGK------------SFHACAVKFL--GKLD-------------VFV 277
             I   A    + + +            S+ A  V ++  G ++             V  
Sbjct: 210 AMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAA 269

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N+++  + + G ++ +  VF+K+ ER+  TW+A+I  Y QN    EA+  F  M   G+
Sbjct: 270 CNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGV 329

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           RPN  +++ +L  C    +++ G    + A L     +     + ++ +  + G   +AK
Sbjct: 330 RPNYPSVISILTVCAALAVLDYGREVHA-AMLRCSFDMDVFAVSALITMYIKCGNLDKAK 388

Query: 398 EFLYDLPFDP-GIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALS 454
              +   F+P  I  W +++ G   H   E  LG F   R+  + P+ + +Y+    A S
Sbjct: 389 RVFHT--FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI-TYIGALTACS 445

Query: 455 VAGK 458
             GK
Sbjct: 446 YTGK 449



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 90/241 (37%), Gaps = 60/241 (24%)

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM--------- 231
           I  L +    E A   F+ MP R   S+NA++ GY +    + A+ LF  M         
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 232 -LREGLVPNHSTLPCAIIAAANIAALGMGKSF---------------------------H 263
            L  GL     TLP A  A A+I       SF                           H
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 264 ACAVKFLGKL-------------------DVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
                 LG L                   DV    +++S Y + G + ++  +FD++ +R
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR 203

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           N+V+W A+I GYAQNG    A + FE M       N V+   +L      G VE     F
Sbjct: 204 NVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELF 259

Query: 365 S 365
           +
Sbjct: 260 N 260


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 152/457 (33%), Positives = 261/457 (57%), Gaps = 10/457 (2%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ++ + +   ++FDE+PD +VV+ T ++  + +     EA  LF  M   N+     ++ +
Sbjct: 155 DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTA 210

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           +I       ++NL ++L     +V  + N    +A+L  YI+   +E+A  +F       
Sbjct: 211 MISGYAQNGEVNLARKLF----EVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHP 266

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V +   M+ G  +R   + A  +F++M  R+  +W+AMI  Y Q     EA++ F EML 
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+ PN+ ++   +   A +A L  G+  HA  ++    +DVF  ++LI+ Y KCG+++ 
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VF     ++IV WN++I GYAQ+G GE+A+  F  MR+ G+ P+G+T +G L AC++
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           TG V++G   F+   +        EHY+CMVDLL RSG  +EA + + ++P +P    W 
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           AL+G C++H N E+ EFAA+++L L+P +   YV+LS+  +  G+W++ S +R+ +  + 
Sbjct: 507 ALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRN 566

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           + + PGCSWIE   +VH+F +GD   H   E  A+LR
Sbjct: 567 LNKSPGCSWIEYDKRVHLFTSGDVLAH--PEHAAILR 601



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 191/425 (44%), Gaps = 46/425 (10%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS-EFTFGSVIPSSTALED 123
           F+ +P     S   ++  + +    + A+ LF RM      PS +    + + S  +L  
Sbjct: 40  FEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM------PSRDLASYNALISGLSLRR 93

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
             L     A A+ +    +V   +++L  Y++   + +A R+F+     N VSYT ++ G
Sbjct: 94  QTLPDAAAALAS-IPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGG 152

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           LL   R  +A +LF EMP R+VV+W AM+ GY Q GR  EA  LF EM +  +V    + 
Sbjct: 153 LLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV----SW 208

Query: 244 PCAIIAAANIAALGMGK------------SFHACAVKFL--GKLD-------------VF 276
              I   A    + + +            S+ A  V ++  G ++             V 
Sbjct: 209 TAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVA 268

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
             N+++  + + G ++ +  VF+K+ ER+  TW+A+I  Y QN    EA+  F  M   G
Sbjct: 269 ACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRG 328

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           +RPN  +++ +L  C    +++ G    + A L     +     + ++ +  + G   +A
Sbjct: 329 VRPNYPSVISILTVCAALAVLDYGREVHA-AMLRCSFDMDVFAVSALITMYIKCGNLDKA 387

Query: 397 KEFLYDLPFDP-GIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNAL 453
           K   +   F+P  I  W +++ G   H   E  LG F   R+  + P+ + +Y+    A 
Sbjct: 388 KRVFHT--FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI-TYIGALTAC 444

Query: 454 SVAGK 458
           S  GK
Sbjct: 445 SYTGK 449



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 90/241 (37%), Gaps = 60/241 (24%)

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM--------- 231
           I  L +    E A   F+ MP R   S+NA++ GY +    + A+ LF  M         
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 232 -LREGLVPNHSTLPCAIIAAANIAALGMGKSF---------------------------H 263
            L  GL     TLP A  A A+I       SF                           H
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 264 ACAVKFLGKL-------------------DVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
                 LG L                   DV    +++S Y + G + ++  +FD++ +R
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR 203

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           N+V+W A+I GYAQNG    A + FE M       N V+   +L      G VE     F
Sbjct: 204 NVVSWTAMISGYAQNGEVNLARKLFEVMP----ERNEVSWTAMLVGYIQAGHVEDAAELF 259

Query: 365 S 365
           +
Sbjct: 260 N 260


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 162/471 (34%), Positives = 254/471 (53%), Gaps = 35/471 (7%)

Query: 41   TPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
            +  + T  +S      +      VFDE+   +VVS T ++   A+   ++E  +LF RM 
Sbjct: 571  SACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQ 630

Query: 101  LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
            L  + P +FT  + + +      L LGK +HA  T++GL++++ V +A+L++Y       
Sbjct: 631  LEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSN----- 685

Query: 161  EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
                                 CG      + +AL  F+ M  R++VSWN M   Y+Q G 
Sbjct: 686  ---------------------CG-----DWREALSFFETMKARDLVSWNIMSAAYAQAGL 719

Query: 221  NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
             +EAV LF  M  EG+ P+  T    +  +   A +  GK FH  A +     DV V   
Sbjct: 720  AKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATG 779

Query: 281  LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
            L+  YAKCG +++++ +F    +  +V  NA+I   AQ+G  EEA++ F +M+  G+RP+
Sbjct: 780  LVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPD 839

Query: 341  GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKE 398
              TL+ ++ AC H G+VE+G S F   K E  G + P  EHYAC VDLL R+G+ + A++
Sbjct: 840  VATLVSIISACGHAGMVEEGCSSFLTMK-EYFG-ISPTLEHYACFVDLLGRAGQLEHAEQ 897

Query: 399  FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
             +  +PF+     W +LLG C++  + ELGE  A+RIL LDP + +++V+LSN     GK
Sbjct: 898  IIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGK 957

Query: 459  WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            W +    R+++ ++ +   PG SW+EI  +VH FV GDR+H   DEIY VL
Sbjct: 958  WKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVL 1008



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 209/463 (45%), Gaps = 57/463 (12%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C  S  L K  + H L  N  +E        L    +R     CGS        H 
Sbjct: 31  LLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVR-----CGS----LEEAHA 81

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALE 122
           +F ++ + NVVS T +I   A+   +  A  LF  MLL  +  P+ +T  +++ +     
Sbjct: 82  IFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSR 141

Query: 123 DLNLGKQLHAWATKVGLQ----SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           DL +G+ +HA   ++GL+    +   VG+A++++Y K  S             P      
Sbjct: 142 DLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGS-------------P------ 182

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR-NEEAVNLFIEMLREGLV 237
                       EDA+ +F  +P ++VVSW AM G Y+Q  R   +A+ +F EML + L 
Sbjct: 183 ------------EDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLA 230

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  T    I A     +L  G   H+   +     D   GN+LI+ Y KCG  E +  V
Sbjct: 231 PNVITF---ITALGACTSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGV 287

Query: 298 FDKLTER---NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
           F  +  R   ++V+WNA+I    + GR  +A+  F R+R+ G+RPN VTL+ +L A   +
Sbjct: 288 FKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAAS 347

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           G V+ G +     ++ + G L+       ++ + ++ G F  A      + +   +  W 
Sbjct: 348 G-VDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWN 406

Query: 414 ALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALS 454
            +LG  +   +    +  F    +  +DP  V S++ + NA S
Sbjct: 407 TMLGASEDRKSFGKVVNTFHHMLLAGIDPNKV-SFIAILNACS 448



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 195/422 (46%), Gaps = 40/422 (9%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ +L  C +S  L     +H++     +E ++++   L   A+      CGS  D  + 
Sbjct: 130 LVAMLNACANSRDLAIGRSIHAMIWELGLE-RESTTATLVGNAMINMYAKCGSPEDAIA- 187

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHH-YEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
              VF  +P+ +VVS T + G +A++   Y +A+ +F  MLL  + P+  TF + + + T
Sbjct: 188 ---VFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           +L D   G  LH+   + GL  +   G+A++++Y K    E A  VF+            
Sbjct: 245 SLRD---GTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFK------------ 289

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                        A+   QE+   ++VSWNAMI    + GR+ +A+ +F  +  EG+ PN
Sbjct: 290 -------------AMASRQEL---DLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPN 333

Query: 240 HSTLPCAIIA-AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
             TL   + A AA+    G  + FH    +     DV VGN++IS YAKCG    +  VF
Sbjct: 334 SVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVF 393

Query: 299 DKLTER-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
            ++  + ++++WN ++          + +  F  M + GI PN V+ + +L AC+++  +
Sbjct: 394 RRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEAL 453

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALL 416
           + G    S         ++      +V +  + G   EA+    ++P     +  W  +L
Sbjct: 454 DFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVML 513

Query: 417 GG 418
           G 
Sbjct: 514 GA 515



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 166/363 (45%), Gaps = 58/363 (15%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + +++ S     DL  GK+ H      GL+ ++F+G+ ++++Y++  S+EEA  +F    
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF---- 83

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                       +M  RNVVSW A+I   +Q+G    A  LF  
Sbjct: 84  ---------------------------SKMEERNVVSWTALISANAQSGAFARAFALFRT 116

Query: 231 MLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHA----CAVKFLGKLDVFVGNSLISFY 285
           ML E    PN  TL   + A AN   L +G+S HA      ++        VGN++I+ Y
Sbjct: 117 MLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMY 176

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR-GEEAIEFFERMRINGIRPNGVTL 344
           AKCGS ED++ VF  + E+++V+W A+   YAQ  R   +A+  F  M +  + PN +T 
Sbjct: 177 AKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITF 236

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           +  L AC  T L +  + +   + L + G+   P     ++++  + G ++ A      +
Sbjct: 237 ITALGAC--TSLRDGTWLH---SLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAM 291

Query: 404 PFDPGIGF--WKALLGGCQIHSNVELGE-------FAARRILALDPEDVSSYVMLSNALS 454
                +    W A+     I ++VE G        F   R+  + P  V+   +L NAL+
Sbjct: 292 ASRQELDLVSWNAM-----ISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITIL-NALA 345

Query: 455 VAG 457
            +G
Sbjct: 346 ASG 348



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 138/306 (45%), Gaps = 37/306 (12%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG     +  V +      +L++VS   +I    +   + +A+ +F R+ L  +RP+  T
Sbjct: 278 CGDWEGAYG-VFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVT 336

Query: 111 FGSVIPSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
             +++ +  A   D    ++ H    + G   +V VG+AI+ +Y K              
Sbjct: 337 LITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAK-------------- 382

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNEEAVNLF 228
                       CG      F  A  +F+ +  + +V+SWN M+G         + VN F
Sbjct: 383 ------------CGF-----FSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTF 425

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV-KFLGKLDVFVGNSLISFYAK 287
             ML  G+ PN  +    + A +N  AL  G+  H+  + +    ++  V   L+S Y K
Sbjct: 426 HHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGK 485

Query: 288 CGSMEDSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           CGS+ ++ LVF +  L  R++VTWN ++  YAQN R +EA      M   G+ P+ ++  
Sbjct: 486 CGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFT 545

Query: 346 GLLWAC 351
            +L +C
Sbjct: 546 SVLSSC 551



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 140/296 (47%), Gaps = 35/296 (11%)

Query: 58  FSSVHQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           FS+   VF  +    +V+S  T++G    +  + + +  F  MLL  I P++ +F +++ 
Sbjct: 386 FSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILN 445

Query: 117 SSTALEDLNLGKQLHAWA-TKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
           + +  E L+ G+++H+   T+        V + ++ +Y K  SI EA  VF++       
Sbjct: 446 ACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKE------- 498

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                                   +P R++V+WN M+G Y+Q  R++EA    +EML+ G
Sbjct: 499 ----------------------MPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGG 536

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           ++P+  +    +   ++       +    C ++  G     +  +LIS + +C  +E + 
Sbjct: 537 VLPDALSFTSVL---SSCYCSQEAQVLRMCILES-GYRSACLETALISMHGRCRELEQAR 592

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            VFD++   ++V+W A++   A+N   +E    F RM++ G+ P+  TL   L  C
Sbjct: 593 SVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTC 648


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 163/508 (32%), Positives = 279/508 (54%), Gaps = 43/508 (8%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C  S +LN   +LH+   +  I    A  Q L T  +   +VS     +   +   
Sbjct: 53  LLQSCIDSKALNPGKQLHAQFYHLGI----AYNQDLATKLVHLYAVS-----NSLLNARN 103

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++P  N+     +I  +A    ++ AI L+ +ML   +RP  FT   V+ + +AL  
Sbjct: 104 LFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSA 163

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  G+ +H +  K G + ++FVG+A++D+Y K   + +A RVF+                
Sbjct: 164 IGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFD---------------- 207

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                          ++  R+ V WN+M+  Y+Q G  +E+++L  EM   G+ P  +TL
Sbjct: 208 ---------------KIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATL 252

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              I ++A++A L  G+  H    +   + +  V  +LI  YAKCGS++ +L +F++L E
Sbjct: 253 VTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLRE 312

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           + +V+WNA+I GYA +G    A++ F++MR    RP+ +T +G+L AC+   L+++G + 
Sbjct: 313 KRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRAL 371

Query: 364 FSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           ++   + D G+    +HY CM+DLL   G+  EA + + ++   P  G W ALL  C+IH
Sbjct: 372 YN-LMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIH 430

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            NVEL E A  +++ L+P+D  +YV+L+N  + +GKW+ V  +R+ M +K + +   CSW
Sbjct: 431 GNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSW 490

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           IE+K+KV+ F+ GD +H  +D IYA L+
Sbjct: 491 IEVKNKVYAFLAGDVSHSNSDAIYAELK 518



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 158/321 (49%), Gaps = 43/321 (13%)

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           + + + S++ S    + LN GKQLHA    +G+  N  + + ++ LY   +S+       
Sbjct: 46  THYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSL------- 98

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                                    +A  LF ++P +N+  WN +I GY+  G ++ A+ 
Sbjct: 99  ------------------------LNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAII 134

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           L+ +ML  GL P++ TLP  + A + ++A+G G+S H   +K   + D+FVG +LI  YA
Sbjct: 135 LYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYA 194

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCG + D+  VFDK+  R+ V WN+++  YAQNG  +E+I     M  NG+RP   TL+ 
Sbjct: 195 KCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVT 254

Query: 347 LL-----WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
           ++      AC   G    G+ +    +  D      +    ++D+ ++ G  K A   L+
Sbjct: 255 VISSSADVACLPYGREIHGFGWRHGFQSND------KVKTALIDMYAKCGSVKVALA-LF 307

Query: 402 DLPFDPGIGFWKALLGGCQIH 422
           +   +  +  W A++ G  +H
Sbjct: 308 ERLREKRVVSWNAIITGYAMH 328


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 260/435 (59%), Gaps = 6/435 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +   NV    ++I  +AK   Y EA  LF++M   ++ P +FT  ++   S+ L  
Sbjct: 80  VFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGA 139

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK +H  + ++G  S+  V ++I+ +Y K  + EE+ +VF++    N  S+  +I G
Sbjct: 140 LFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAG 199

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNHST 242
                      ++F  M  RNV SW AMI GY + G ++EA++LF +M + +G+ PN  +
Sbjct: 200 YAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVS 259

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF-DKL 301
           L   + A ++ + L  G+  H  AV+     +V + N+LI  Y+KCGS++ +  VF D  
Sbjct: 260 LVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDS 319

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             ++ ++W+++I GY  +G+G+EAI  +++M   GIRP+ +T +G+L AC+ +GLV +G 
Sbjct: 320 LCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGL 379

Query: 362 SYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           + +S   + D G ++P  E +AC+VD+L R+G+   A +F+  +P +PG   W AL+   
Sbjct: 380 NIYSSV-INDYG-IEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCS 437

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
            IH ++E+ E A R ++ L+PE+ S+YV +SN  + + +WD V+ +RR MK+K + +VPG
Sbjct: 438 IIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPG 497

Query: 480 CSWIEIKSKVHVFVT 494
           CSWI I +K H F T
Sbjct: 498 CSWISINNKTHCFYT 512



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 140/340 (41%), Gaps = 70/340 (20%)

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
           S   + L L +Q H+    +GL  N  + + ++  Y        +  VF+   + NV  +
Sbjct: 33  SVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLW 92

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            ++I G  K   + +A +LF +M   +V                               +
Sbjct: 93  NSLINGYAKNRLYNEAFQLFNQMCSSDV-------------------------------L 121

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P+  TL      ++ + AL  GKS H  +++     D  V NS++S Y KCG+ E+S  V
Sbjct: 122 PDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKV 181

Query: 298 FDKLTERNIVTWNAVICGYA-------------------------------QNGRGEEAI 326
           FD++T RN  +WN +I GYA                               +NG  +EA+
Sbjct: 182 FDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEAL 241

Query: 327 EFFERMR-INGIRPNGVTLLGLLWACNH-TGLVEKGYSYFSQAKLEDPGMLKPEHYAC-- 382
             F  M+ I+GI PN V+L+ +L AC+  +GL+     +    + E    L  E   C  
Sbjct: 242 SLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKE----LNNEVSLCNA 297

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           ++D+ S+ G    A+    D         W +++ G  +H
Sbjct: 298 LIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLH 337



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 154/341 (45%), Gaps = 74/341 (21%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTAL 121
           +VFD +   NV S T +I  + +    +EA+ LF  M +++ I P+  +  SV+P+ ++ 
Sbjct: 211 RVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSF 270

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  G+Q+H +A +  L + V + +A++D+Y K  S++ A RVFED            +
Sbjct: 271 SGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDS----------L 320

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           C                    ++ +SW++MI GY   G+ +EA+ L+ +ML+ G+ P+  
Sbjct: 321 C--------------------KDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDM- 359

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
                      I  +G+     AC+   L    + + +S+I+ Y    ++E    + D L
Sbjct: 360 -----------ITTVGI---LSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDML 405

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN--HTGL--V 357
                           + G+ + A++F + M +      G ++ G L +C+  H  L   
Sbjct: 406 ---------------GRAGQLDPALDFIKAMPVEP----GPSVWGALVSCSIIHGDLEMQ 446

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           E  Y +  Q + E+     P +Y  + +L + S R+    E
Sbjct: 447 ELAYRFLIQLEPEN-----PSNYVSISNLYASSRRWDAVAE 482



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 9/197 (4%)

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
            +   LI  YA C     S LVFD L  +N+  WN++I GYA+N    EA + F +M  +
Sbjct: 59  LLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSS 118

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFK 394
            + P+  TL  L    +  G +  G S     K    G +     A  ++ +  + G F+
Sbjct: 119 DVLPDDFTLSTLSKVSSELGALFSGKSI--HGKSIRIGFVSDTVVANSIMSMYCKCGNFE 176

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL-ALDPEDVSSYVMLSNAL 453
           E+++   ++      G W  L+ G  +  N+ +G    RR+   +   +V S+  + N  
Sbjct: 177 ESRKVFDEMTIRNS-GSWNVLIAGYAVSGNLVVG----RRVFDRMKCRNVFSWTAMINGY 231

Query: 454 SVAGKWDNVSNIRREMK 470
              G  D   ++ R+M+
Sbjct: 232 VENGDSDEALSLFRDMQ 248


>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
 gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
 gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 531

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 158/461 (34%), Positives = 247/461 (53%), Gaps = 8/461 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF----GSVIPSS 118
           ++FDE+P+  +V  T +           +AI +F  M+   + P         G+   + 
Sbjct: 67  RLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAG 126

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           +     N GK++HA     G++ +VFV + ++ +Y +   +  + RVF+D  + + +++ 
Sbjct: 127 SWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWN 186

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE---G 235
            M+    +  + + A +LF  MP R+VVSWN ++ GY   GR  EA+ LF +M+      
Sbjct: 187 AMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCA 246

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + PN  T+   + A A    L  G   HA   +     D ++   LI  Y KCGS++++L
Sbjct: 247 VHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNAL 306

Query: 296 LVFDKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354
            VF+K   +R++ +W  VICG A +GR  +A+  F+ M+ NGI P+ VTL+G+L AC H 
Sbjct: 307 QVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHG 366

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           GLV++G  YF   + +     K EHY CM+DLL R GR +EA   +  +P DP    W A
Sbjct: 367 GLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGA 426

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
            L  C++H N+ELG+ AA  +  LDP+D    VMLS+  + A  W  ++  RREM    +
Sbjct: 427 FLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQV 486

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
            + PGCS IE+K +VH FV G   H    EI +VL+    Q
Sbjct: 487 KKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVEAQ 527



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 132/313 (42%), Gaps = 48/313 (15%)

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
           + A +LF EMP + +V   AM   +  +G+  +A+ +F +M+ +G+ P++  L  A+ A 
Sbjct: 63  DHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVALGAC 122

Query: 251 AN----IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI 306
                  A    GK  HA  V    + DVFV   LI  Y +CG +  S  VFD +  R+ 
Sbjct: 123 HGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRST 182

Query: 307 VTWNA-------------------------------VICGYAQNGRGEEAIEFFERM--- 332
           +TWNA                               V+ GY   GR  EA+  F +M   
Sbjct: 183 ITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSP 242

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSR 389
               + PN  T+  +L AC   G +E G   ++Y  + ++ D G L      C++D+  +
Sbjct: 243 SSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLD----RCLIDMYCK 298

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV--ELGEFAARRILALDPEDVSSYV 447
            G    A +     P    +  W  ++ G  +H      L  F   +   + P+DV + V
Sbjct: 299 CGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDV-TLV 357

Query: 448 MLSNALSVAGKWD 460
            + NA +  G  D
Sbjct: 358 GVLNACAHGGLVD 370



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN---IRPSEFTFGS 113
           K  + +++F  +P  +VVS  T++  +       EA+ LF +M+  +   + P+  T  +
Sbjct: 197 KVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMST 256

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNP 172
           ++ +      L  G  +HA+  +  +  + ++   ++D+Y K  SI+ A +VFE      
Sbjct: 257 ILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKR 316

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLF 228
           ++ S+TT+ICGL    R  DAL++F  M    +    V+   ++   +  G  +E +  F
Sbjct: 317 DLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYF 376

Query: 229 IEM 231
             M
Sbjct: 377 YSM 379


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 159/479 (33%), Positives = 266/479 (55%), Gaps = 34/479 (7%)

Query: 41  TPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
            P + T  V+     +  ++ H +FD +   N+     +I  +A    YE AI L+ +M 
Sbjct: 35  NPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMR 94

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
              + P +FTF  V+ + +AL  +  GK++H    + GL+S+VFVG+A++D+Y K   +E
Sbjct: 95  DYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVE 154

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
            A +VF+                               ++  R+VV WN+M+  YSQ G+
Sbjct: 155 SARQVFD-------------------------------KIDERDVVCWNSMLATYSQNGQ 183

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            +E++ L   M   GL P   T   +I A+A+   L  GK  H  + +   + +  V  +
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L+  YAK GS+  +  +F+ L E+ +V+WNA+I GYA +G   EA++ F+ M+   + P+
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVLPD 302

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEAKEF 399
            +T +G+L AC+H GL+ +G  +F ++ + D  +    +HY CM+DLL   GR +EA + 
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHF-RSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKL 361

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + ++  +P  G W ALL  C+IH NVE+GE A  +++ L+P+D  +YV+LSN  + AGKW
Sbjct: 362 IMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKW 421

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           D V+ +R  M  KG+ +   CSWIE+ +KVH F++ D +H  ++ IYA L+   + ++E
Sbjct: 422 DGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKE 480



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 155/317 (48%), Gaps = 39/317 (12%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           + S++ S    + +  GKQLHA   +VG+  N  + + +++LY   +S+  A  +F+   
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             N+  +  M                               I GY+  G  E A++L+ +
Sbjct: 64  KRNLFLWNVM-------------------------------IRGYAWNGPYELAISLYYQ 92

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   GLVP+  T P  + A + ++A+  GK  H   ++   + DVFVG +LI  YAKCG 
Sbjct: 93  MRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGC 152

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +E +  VFDK+ ER++V WN+++  Y+QNG+ +E++     M  NG++P   T +  + A
Sbjct: 153 VESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAA 212

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
               GL+ +G   + Y  +   E    +K      ++D+ ++SG    A+  L++L  + 
Sbjct: 213 SADNGLLPQGKELHGYSWRHGFESNDKVK----TALMDMYAKSGSVNVARS-LFELLEEK 267

Query: 408 GIGFWKALLGGCQIHSN 424
            +  W A++ G  +H +
Sbjct: 268 RVVSWNAMITGYAMHGH 284


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 154/452 (34%), Positives = 257/452 (56%), Gaps = 5/452 (1%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           P  NV+S T +I  +++     EA+  F+ ML   I P E T   ++ +   L+DL  G+
Sbjct: 198 PARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGR 257

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT---HNPNVVSYTTMICGLL 185
            LH    + G+  +  +  A++D+Y K   I  A  VF+       P   S+  MI G  
Sbjct: 258 SLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQ--SWNAMIDGYC 315

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245
           K    + A  LF +M  R++V++N++I GY   GR  EA+ LF++M R  L  ++ T+  
Sbjct: 316 KLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVS 375

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            + A A++ AL  G++ HAC  + L ++D+++G +L+  Y KCG +E++ LVF  ++ R+
Sbjct: 376 LLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRD 435

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           + TW+A+I G A NG G+ A+E+F  M+++G +PN VT + +L AC+H+ L+++G  YF 
Sbjct: 436 VHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFE 495

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
           + +L        EHY CM+DLL RSG   EA + +  +P  P    W ++L  C++H + 
Sbjct: 496 EMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDA 555

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
            L   AA  +L L+P++ + YV L N    + +W++ S IRR M+E+G+ +  G S I +
Sbjct: 556 NLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITV 615

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
             +VH F+  DR H    EI A++   T +++
Sbjct: 616 AGQVHKFIVCDRTHPQIMEITAMMEEITRRLK 647



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 193/412 (46%), Gaps = 50/412 (12%)

Query: 49  VSCGSESDKFSSVHQV--FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP 106
           V+C + +D     + +  FD +P    +  T +   F      E  + L+ RM    +  
Sbjct: 42  VNCFTPTDPLHLRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCT 101

Query: 107 SEFTFGSVIPS-STALEDLNLGKQLHAWATKVGLQSNV-FVGSAILDLYIKLSSIEEATR 164
             FTF  +    +     + L + LHA   +  L S V  V + I+ +Y++L    +A R
Sbjct: 102 DAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARR 161

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
            F+D    + V++TT+I GL K    +DA  L +  P RNV+SW  +I GYS+ GR  EA
Sbjct: 162 AFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEA 221

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN----S 280
           V+ F  ML +G+ P+  T+   + A A +  L  G+S H    K +G+  + +      +
Sbjct: 222 VDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLH----KLVGEKGMLMSGKLVVA 277

Query: 281 LISFYAKCGSME------DSL--------------------------LVFDKLTERNIVT 308
           LI  YAKCG +       D+L                           +FD++ +R++VT
Sbjct: 278 LIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVT 337

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           +N++I GY   GR  EA+  F +MR + +R +  T++ LL AC   G + +G +    A 
Sbjct: 338 FNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRAL--HAC 395

Query: 369 LEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +E   +++ + Y    ++D+  + GR +EA      +     +  W A++ G
Sbjct: 396 IEQ-RLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVR-DVHTWSAMIAG 445



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 118/253 (46%), Gaps = 35/253 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++ D ++V+  ++I  +       EA+ LF +M   ++R   FT  S++ +  +L  
Sbjct: 326 LFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGA 385

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G+ LHA   +  ++ ++++G+A+LD+Y+K   +EEA+ VF                 
Sbjct: 386 LPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVF----------------- 428

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                         Q M  R+V +W+AMI G +  G  + A+  F  M  +G  PN  T 
Sbjct: 429 --------------QAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTY 474

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN--SLISFYAKCGSMEDSL-LVFDK 300
              + A ++   L  G+ +    ++ L  +   + +   +I    + G +++++ LV   
Sbjct: 475 IAILTACSHSCLLDEGRLYFE-EMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTM 533

Query: 301 LTERNIVTWNAVI 313
             + N V W +++
Sbjct: 534 PMQPNAVIWASIL 546


>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
          Length = 494

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 167/454 (36%), Positives = 251/454 (55%), Gaps = 14/454 (3%)

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF-------GSVIPSSTALEDLN 125
            VS T+ I   ++     EA   FS M L  + P+  TF       G V   S AL DL 
Sbjct: 30  TVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSGSEALGDL- 88

Query: 126 LGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
               LH +A K+GL +++V VG+AIL +Y K     +A  VF+   + N V++ TMI G 
Sbjct: 89  ----LHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMIDGY 144

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           ++  +  +A+KLF EMP R+++SW AMI G+ + G +EEA+  F EM   G+ P++  + 
Sbjct: 145 MRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAII 204

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
            A+ A  ++ AL  G   H   +    K ++ V NSLI  Y +CG +E +  VFDK+ +R
Sbjct: 205 AALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKR 264

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
            +V+WN+VI G+A NG   E++ +F +M+  G +P+ VT  G L AC+H GLVE+G  YF
Sbjct: 265 TVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYF 324

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH-S 423
              K +     + EHY C+VDL SR+GR ++A   +  +P  P      +LL  C+ H +
Sbjct: 325 QTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRNHGN 384

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N  L E   + +  L+ +  S+YV+LSN  +  G W+  S +RR+MK  G+ + PG S +
Sbjct: 385 NTVLAERLVKHLSDLNVKSHSNYVILSNMYAADGIWEGASKMRRKMKGLGLKKQPGFSSV 444

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           EI    HVF+ GD  H     I  VL   +  +R
Sbjct: 445 EIDDCTHVFMAGDSAHVETAYIREVLELISSDLR 478



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 92/184 (50%), Gaps = 4/184 (2%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSV 114
           S + ++  ++FDE+P+ +++S T +I  F K+  +EEA+  F  M +  ++P      + 
Sbjct: 147 SGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAA 206

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + + T L  L+ G  +H +      ++N+ V ++++DLY +   +E A  VF+      V
Sbjct: 207 LAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTV 266

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           VS+ ++I G        ++L  F++M       + V++   +   S  G  EE +  F  
Sbjct: 267 VSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQT 326

Query: 231 MLRE 234
           M R+
Sbjct: 327 MKRD 330



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 27/210 (12%)

Query: 278 GNSLISFYAKCGSME-DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
           G+  + F  +  S +   +L  ++ T    V+W + I   ++NGR  EA + F  MR+ G
Sbjct: 1   GSHTVPFVTRQKSSQIQRILKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAG 60

Query: 337 IRPNGVTLLGLLWACNHTGLVEKG--------YSYFSQAKLEDPGMLKPEHYACMVDLLS 388
           + PN +T + LL  C   G V  G        + Y  +  L+   ++       ++ + S
Sbjct: 61  VEPNHITFIALLSGC---GDVSSGSEALGDLLHGYACKLGLDRTHVMVG---TAILGMYS 114

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGG----CQIHSNVELGEFAARRILALDPEDVS 444
           + GRF +A+  ++D   D     W  ++ G     Q+++ V+L +    R       D+ 
Sbjct: 115 KRGRFGKAR-LVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPER-------DLI 166

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           S+  + N     G  +      REM+  G+
Sbjct: 167 SWTAMINGFVKKGFHEEALAWFREMQISGV 196


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 163/470 (34%), Positives = 255/470 (54%), Gaps = 9/470 (1%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEV-PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           A+   S S GS  D      ++F E+ P  NVVS  T+IG  A+     EA  LF  M  
Sbjct: 147 ALLHSSASAGSLRDS----RRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRR 202

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
             +    FTF S++   +   +L +G+ +H      G + ++ +G+A++D+Y K   +  
Sbjct: 203 QGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWM 262

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN 221
           A R F+     NVVS+T+M+C L K    + A   F++MP RN++SWNAMI  Y Q GR 
Sbjct: 263 AHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRF 322

Query: 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
            E + L+  M   GL P+  TL   +        L  G+  H           V V NSL
Sbjct: 323 PETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSL 382

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I  YA+CG ++ S+ +F ++  +N ++WN +I   A +GR +EA+ FF  M  +   P+ 
Sbjct: 383 IDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDE 442

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEF 399
           +T +GLL AC+H GL+E G  YF    +     +KP  EHYACMVDLL R G   +A + 
Sbjct: 443 ITFVGLLSACSHGGLLEDGQYYFK--AMRHIYNVKPEVEHYACMVDLLGRHGHLAKAVDL 500

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + D+P  P +  W AL+G C+IH +VE+G+ A +++L L+  +   +V++SN L    +W
Sbjct: 501 IKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELEGINGGLFVLISNLLYETRQW 560

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +++  +R+ M+++G  +  G S IEI + +H F   D  H  + +IYA +
Sbjct: 561 EDMKRLRKLMRDRGTKKDMGVSSIEINNSIHEFGVEDIRHESSSQIYAAV 610



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/494 (23%), Positives = 209/494 (42%), Gaps = 80/494 (16%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESD-KFS 59
           +++LL  CRS   +  L +LH+    +L+    ++V  +    + +     G   D    
Sbjct: 6   VLELLQQCRS---IRHLDQLHA----HLLAHGPSAVASVVPQLVASYCALSGRAGDVALC 58

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
              ++FD VPD +  +  ++I  ++     +EA+ L   +L   I P+EFT   V+ + +
Sbjct: 59  HARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACS 118

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF-EDTHNPNVVSYT 178
                      H  A K+G    VFVG+A+L       S+ ++ R+F E   + NVVS+ 
Sbjct: 119 RARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWN 178

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           TMI G  +     +A  LF+EM                                R+G++ 
Sbjct: 179 TMIGGCAQAGETSEACALFREMR-------------------------------RQGVLA 207

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC---------- 288
           +  T    ++  +    L +G+  H   +    ++D+ +GN+L+  Y KC          
Sbjct: 208 DVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCF 267

Query: 289 ---------------------GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
                                GS++ +   F+++ ERNI++WNA+I  Y Q GR  E + 
Sbjct: 268 DVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLG 327

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKG--YSYFSQAKLEDPGMLKPEHYACMVD 385
            + RM+  G+ P+ VTL G+L      G +  G     + Q    DPG+        ++D
Sbjct: 328 LYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTV---LNSLID 384

Query: 386 LLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDV 443
           + +R G+   +     ++P    I  W  ++G   +H   +      R ++  A  P+++
Sbjct: 385 MYARCGQVDTSISLFTEMPNKNTIS-WNVIIGALAMHGRAQEAVMFFRAMVSDAFSPDEI 443

Query: 444 SSYVMLSNALSVAG 457
            ++V L +A S  G
Sbjct: 444 -TFVGLLSACSHGG 456



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 140/312 (44%), Gaps = 20/312 (6%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P +V+    + G         A ++F  +P  +  ++N++I  YS +G  +EA+ L  ++
Sbjct: 39  PQLVASYCALSGRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDV 98

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           LR G++PN  TLP  + A +   A     + H  A+K      VFVGN+L+   A  GS+
Sbjct: 99  LRRGILPNEFTLPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSL 158

Query: 292 EDSLLVFDKLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
            DS  +F ++   RN+V+WN +I G AQ G   EA   F  MR  G+  +  T + LL  
Sbjct: 159 RDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLV 218

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA------CMVDLLSRSGRFKEAKEFLYDLP 404
           C+  G +E G       +L    ML             +VD+  + G    A      +P
Sbjct: 219 CSKEGNLEVG-------RLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMP 271

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVS 463
               +  W ++L     H +V+    AAR      PE ++ S+  + +     G++    
Sbjct: 272 IKNVVS-WTSMLCALAKHGSVD----AARDWFEQMPERNIISWNAMISCYVQGGRFPETL 326

Query: 464 NIRREMKEKGMT 475
            +   MK  G+T
Sbjct: 327 GLYNRMKSLGLT 338


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 168/479 (35%), Positives = 259/479 (54%), Gaps = 39/479 (8%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T  VS G   D      ++FDE+P  +VVS   +I  + +   +EEAI  F  M   
Sbjct: 202 ALITGYVSQGCLDD----ARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEA 257

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           N+ P++ T   V+ +        LGK + +W    G  SN+ + +A++D+Y K       
Sbjct: 258 NVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCK------- 310

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG       + A +LF  +  ++V+SWN MIGGYS     E
Sbjct: 311 -------------------CG-----ETDIARELFDGIEEKDVISWNTMIGGYSYLSLYE 346

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL-GKLDVFVGNSL 281
           EA+ LF  MLR  + PN  T    + A A + AL +GK  HA   K L    +  +  SL
Sbjct: 347 EALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSL 406

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI-RPN 340
           I  YAKCG +E +  VF  +  RN+ +WNA++ G+A +G  E A+  F  M   G+ RP+
Sbjct: 407 IDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPD 466

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEF 399
            +T +G+L AC   GLV+ G+ YF ++ ++D G+  K +HY CM+DLL+R+ +F+EA+  
Sbjct: 467 DITFVGVLSACTQAGLVDLGHQYF-RSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEIL 525

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459
           + ++  +P    W +LL  C+ H  VE GE+ A R+  L+PE+  ++V+LSN  + AG+W
Sbjct: 526 MKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRW 585

Query: 460 DNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           D+V+ IR  + +KGM +VPGC+ IEI   VH F+ GD+ H   + IY +L    + + E
Sbjct: 586 DDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEE 644



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/456 (28%), Positives = 230/456 (50%), Gaps = 15/456 (3%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + LL  C++   +N   ++HSL    +I+T   +   +++  I   +VS   +     S+
Sbjct: 32  LNLLEKCKN---INTFKQIHSL----IIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSL 84

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +   +    NV    ++I  ++       +++LFSRML   ++P+  TF  +  S T  
Sbjct: 85  FEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKA 144

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           +  + GKQLHA A K+ L  N  V ++++ +Y  +  ++ A  VF+ +   + VS+T +I
Sbjct: 145 KATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALI 204

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G + +   +DA +LF E+P ++VVSWNAMI GY Q+GR EEA+  F EM    ++PN S
Sbjct: 205 TGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKS 264

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   + A  +  +  +GK   +         ++ + N+LI  Y KCG  + +  +FD +
Sbjct: 265 TMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGI 324

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            E+++++WN +I GY+     EEA+  FE M  + ++PN VT LG+L AC   G ++ G 
Sbjct: 325 EEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGK 384

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
              +              +  ++D+ ++ G   EA E ++       +  W A+L G  +
Sbjct: 385 WVHAYIDKNLRNSSNASLWTSLIDMYAKCGCI-EAAERVFRSMHSRNLASWNAMLSGFAM 443

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           H + E       R LAL  E V+  +   + ++  G
Sbjct: 444 HGHAE-------RALALFSEMVNKGLFRPDDITFVG 472



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 152/378 (40%), Gaps = 71/378 (18%)

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           +++N  KQ+H+   K GL + VFV S ++                               
Sbjct: 39  KNINTFKQIHSLIIKTGLNNTVFVQSKLIHF----------------------------- 69

Query: 182 CGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           C +        AL LF+E       NV  WN++I GYS +     +++LF  ML  G+ P
Sbjct: 70  CAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQP 129

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           N  T P    +     A   GK  HA A+K     +  V  S+I  YA  G M+ + LVF
Sbjct: 130 NSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVF 189

Query: 299 DKLTER-------------------------------NIVTWNAVICGYAQNGRGEEAIE 327
           DK + R                               ++V+WNA+I GY Q+GR EEAI 
Sbjct: 190 DKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIV 249

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387
            F  M+   + PN  T++ +L AC HT   E G    S  +    G    +    ++D+ 
Sbjct: 250 CFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGS-NLQLTNALIDMY 308

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSS 445
            + G    A+E L+D   +  +  W  ++GG    S  E  L  F       + P DV+ 
Sbjct: 309 CKCGETDIARE-LFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTF 367

Query: 446 YVMLSNALSVA----GKW 459
             +L     +     GKW
Sbjct: 368 LGILHACACLGALDLGKW 385


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 159/497 (31%), Positives = 267/497 (53%), Gaps = 38/497 (7%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTFGSV 114
           D      ++F ++ + +V    T+I   +       A+ LF  M   ++  P  F+F  +
Sbjct: 53  DSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFL 112

Query: 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174
           + ++     L  G QLH  A   GL S++FVG+ ++ +Y + + +  A +VF++   PN+
Sbjct: 113 LKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNI 172

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM--- 231
           V++  ++    + E  +DA ++F+ MP RN+ SWN M+ GY++ G  + A  +F++M   
Sbjct: 173 VAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLK 232

Query: 232 ----------------------------LREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
                                        REG+ PN  +L   + A A   A   G+  H
Sbjct: 233 DDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILH 292

Query: 264 ACAVKFLGKLDVF-VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
              V+  G L +  V N+LI  Y+KCG+++ + LVFD +  R+ V+W A+I G A +G G
Sbjct: 293 G-FVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYG 351

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHY 380
           EEAI  F  M  + I+P+ +T + +L+AC+H GLV+ G SYFS  ++ +   ++P  EHY
Sbjct: 352 EEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFS--RMVNTYGIEPVIEHY 409

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP 440
            CMVDL  R+G+ ++A +F+  +P  P    W+ LLG C IH N+ L     R++  LDP
Sbjct: 410 GCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDP 469

Query: 441 EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHH 500
           E+   +V+LSN  +VAGKW +V+ +RR M  + + + PG S IE+   ++ FV G++ + 
Sbjct: 470 ENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQND 529

Query: 501 MNDEIYAVLRSCTEQIR 517
           +  E +  LR    ++R
Sbjct: 530 IAVEAHQKLREIMSRLR 546



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 143/357 (40%), Gaps = 74/357 (20%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P V     + C +   +    A +LF ++ + +V  +N +I G S +     A+ LF+EM
Sbjct: 37  PLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEM 96

Query: 232 LREGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
            R+ + +P+  +    + AAAN  AL  G   H  AV +     +FVG +LIS YA+C  
Sbjct: 97  RRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECAC 156

Query: 291 MEDSLLVFDKLTERNIVTWNAVI-------------------------------CGYAQN 319
           +  +  VFD++ E NIV WNA++                                GY + 
Sbjct: 157 LVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKA 216

Query: 320 GRGEEAIE-------------------------------FFERMRINGIRPNGVTLLGLL 348
           G  + A E                               FF  +R  G+RPN V+L G+L
Sbjct: 217 GELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVL 276

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLPFDP 407
            AC   G  E G        +E  G L+       ++D  S+ G    A+  ++D     
Sbjct: 277 SACAQAGAFEFG--RILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMAR-LVFDNMLRR 333

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS----SYVMLSNALSVAGKWD 460
               W A++ G  +H     GE A R    ++  ++     +++ +  A S AG  D
Sbjct: 334 SAVSWTAMIAGMAMHG---YGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVD 387



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 78/153 (50%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +++ +     +VF ++P  + VS +T+I  FA   ++ +A   F  +    +RP+E +  
Sbjct: 214 TKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLT 273

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+ +         G+ LH +  K G    + V +A++D Y K  +++ A  VF++    
Sbjct: 274 GVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRR 333

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNV 205
           + VS+T MI G+      E+A++LF EM   N+
Sbjct: 334 SAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNI 366


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 161/504 (31%), Positives = 264/504 (52%), Gaps = 42/504 (8%)

Query: 12  LSLNKLSKL-HSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD 70
           ++L   S+L H L     +  +   +     P + T  +S  ++        +VFDE+P 
Sbjct: 75  IALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPH 134

Query: 71  LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            + V  T +I  +       EA+++        +RP  FT   V+ +   + DL  G+ +
Sbjct: 135 PSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETV 194

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
              A + G+  +VFV +A +DLY+K                          CG + + R 
Sbjct: 195 WRAAEQEGVAQSVFVATAAVDLYVK--------------------------CGEMAKAR- 227

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
               ++F +M H++ V+W AM+GGY+  G   EA++LF+ M  EG+ P+   +  A+ A 
Sbjct: 228 ----EVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSAC 283

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFV-----GNSLISFYAKCGSMEDSLLVFDKLTERN 305
             + AL +G+     A++ +   D F+     G +LI  YAKCGS  ++ +VF ++ +++
Sbjct: 284 TRLGALDLGRQ----AIRMV-DWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKD 338

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           I+ WNA+I G    G  + A     +M  +G++ N  T +GLL +C HTGL++ G  YF 
Sbjct: 339 IIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 398

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
                     + EHY CMVDLLSR+G  +EA + + D+P         ALLGGC+IH N 
Sbjct: 399 NMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNT 458

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           EL E   ++++ L+P +  +YVMLSN  S  G+W++ + +R +MK KG+ +VP CSW+E 
Sbjct: 459 ELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEF 518

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVL 509
           + KVH F  GD++H ++D+IY  L
Sbjct: 519 EGKVHEFRVGDKSHPLSDQIYKKL 542


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 260/453 (57%), Gaps = 20/453 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NI 104
           T  ++  ++     +    FD++P+ +VVS   ++  +A+    EE I LF+ ML   N+
Sbjct: 132 TTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNV 191

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQL-HAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +P E T+ +VI S ++L D  L + +      KVG + N FV +A+LD++ K  ++E A 
Sbjct: 192 QPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAH 251

Query: 164 RVFEDT---HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
           ++FE        + V +  MI    +      A  LF +MP R+ VSWN+MI GY+Q G 
Sbjct: 252 KIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGE 311

Query: 221 NEEAVNLFIEML--REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG----KLD 274
           + +A+ LF EM+   +   P+  T+     A  ++  LG+G      AV  L     ++ 
Sbjct: 312 SFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGN----WAVSILKVNHIQIS 367

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
           + V NSLI+ Y++CGSM+D++L+F ++  R++V++N +I G+A++G G E+IE   +M+ 
Sbjct: 368 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKE 427

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +GI P+ +T + +L AC+H GL+++G   F   K  D      +HYACM+D+L R+GR +
Sbjct: 428 DGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDV-----DHYACMIDMLGRAGRLE 482

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           EA + +  +P +P  G + +LL    IH  VELGE AA ++  ++P +  +Y +LSN  +
Sbjct: 483 EAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYA 542

Query: 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            AG+W     +R  M+++G+ +  G SW+E  S
Sbjct: 543 SAGRWKEGDKVRDTMRKQGVKKTTGLSWLEHNS 575



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 172/383 (44%), Gaps = 80/383 (20%)

Query: 88  HYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
           H +  + LF  ML   +I+P+  +F SV+  S   E +       A   K G   + +V 
Sbjct: 11  HSQVFVSLFKHMLQHCDIKPNA-SFYSVMMKSAGSESM----LFLAHVLKSGYDRDHYVR 65

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNP---------------------------------- 172
           + IL +Y K   IE A ++F++  +                                   
Sbjct: 66  NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 125

Query: 173 -NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            NV+++TTMI G  K+   + A   F +MP R+VVSWNAM+ GY+Q G  EE + LF +M
Sbjct: 126 RNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM 185

Query: 232 LREGLV-PNHSTLPCAIIAAANIAALGMGKS-----------------------FHA--- 264
           L  G V P+ +T    I + +++    + +S                        HA   
Sbjct: 186 LSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCG 245

Query: 265 ---CAVKFLGKLDVF------VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
               A K   +L V+        N++IS YA+ G +  +  +FDK+ +R+ V+WN++I G
Sbjct: 246 NLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAG 305

Query: 316 YAQNGRGEEAIEFFERM--RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
           Y QNG   +AI+ FE M    +  +P+ VT++ +  AC H G +  G    S  K+    
Sbjct: 306 YTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHI- 364

Query: 374 MLKPEHYACMVDLLSRSGRFKEA 396
            +    Y  ++++ SR G  ++A
Sbjct: 365 QISISVYNSLINMYSRCGSMQDA 387



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 211 MIGGYSQTGRNEEA-VNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
           M+  YSQ G + +  V+LF  ML+   + PN S     + +A + + L     F A  +K
Sbjct: 1   MLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSESML-----FLAHVLK 55

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
                D +V N ++  YAK G +E +  +FD++ +R +  WN +I GY + G  EEA   
Sbjct: 56  SGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTL 115

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           F  M    I  N +T     W    TG  +KG
Sbjct: 116 FHVMGDQEISRNVIT-----WTTMITGHAKKG 142


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 163/463 (35%), Positives = 257/463 (55%), Gaps = 13/463 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F   P+ NV   T II   A    +  A+  +S+ML   I+P+ FT  S++ + T    
Sbjct: 77  LFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT---- 132

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L+  + +H+ A K GL S+++V + ++D Y +   +  A ++F+     ++VSYT M+  
Sbjct: 133 LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTC 192

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-------L 236
             K     +A  LF+ M  ++VV WN MI GY+Q G   EA+  F +M+          +
Sbjct: 193 YAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKV 252

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            PN  T+   + +   + AL  GK  H+       K++V VG +L+  Y KCGS+ED+  
Sbjct: 253 RPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARK 312

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VFD +  +++V WN++I GY  +G  +EA++ F  M   G++P+ +T + +L AC H GL
Sbjct: 313 VFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGL 372

Query: 357 VEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           V KG+  F   K +  GM  K EHY CMV+LL R+GR +EA + +  +  +P    W  L
Sbjct: 373 VSKGWEVFDSMK-DGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTL 431

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           L  C+IHSNV LGE  A  +++       +YV+LSN  + A  W  V+ +R  MK  G+ 
Sbjct: 432 LWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVE 491

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + PGCS IE+K++VH FV GDR H  + +IY++L      ++E
Sbjct: 492 KEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKE 534



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 138/310 (44%), Gaps = 49/310 (15%)

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
               ++ LF   P+ NV  W  +I  ++       A++ + +ML   + PN  TL   + 
Sbjct: 70  HLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLK 129

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER---- 304
           A      L   ++ H+ A+KF     ++V   L+  YA+ G +  +  +FD + ER    
Sbjct: 130 A----CTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVS 185

Query: 305 ---------------------------NIVTWNAVICGYAQNGRGEEAIEFFERMRING- 336
                                      ++V WN +I GYAQ+G   EA+ FF +M +   
Sbjct: 186 YTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMG 245

Query: 337 ------IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSR 389
                 +RPN +T++ +L +C   G +E G   +  + +E+ G+ +       +VD+  +
Sbjct: 246 GNGNGKVRPNEITVVAVLSSCGQVGALECG--KWVHSYVENNGIKVNVRVGTALVDMYCK 303

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYV 447
            G  ++A++ ++D+     +  W +++ G  IH  S+  L  F     + + P D+ ++V
Sbjct: 304 CGSLEDARK-VFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDI-TFV 361

Query: 448 MLSNALSVAG 457
            +  A + AG
Sbjct: 362 AVLTACAHAG 371



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 33/68 (48%)

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YA  G +  S+ +F +    N+  W  +I  +A       A+ ++ +M  + I+PN  TL
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124

Query: 345 LGLLWACN 352
             LL AC 
Sbjct: 125 SSLLKACT 132


>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
          Length = 491

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 165/463 (35%), Positives = 258/463 (55%), Gaps = 12/463 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI------P 116
           Q  ++      VS T+ I    +     EA   FS M L  + P+  TF +++      P
Sbjct: 17  QRLNQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFP 76

Query: 117 SSTALEDLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
           S +      L   LH +A K+GL +++V VG+AI+ +Y K   +++A  VF+   + N V
Sbjct: 77  SGSE----TLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSV 132

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
           ++ TMI G ++  + ++A+K+F +MP R+++SW AMI G+ + G +EEA+  F EM   G
Sbjct: 133 TWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISG 192

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
           + P++  +  A+ A  N+ AL  G   H   +    K +V V NSLI  Y +CG +E + 
Sbjct: 193 VRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAR 252

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            VFDK+ +R +V+WN+VI G+A NG   E++ +F +M+  G +P+ VT  G L AC+H G
Sbjct: 253 EVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVG 312

Query: 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           LVE+G  YF   K +     + EHY C+VDL SR+GR ++A + +  +P  P      +L
Sbjct: 313 LVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGSL 372

Query: 416 LGGCQIH-SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           L  C+ H +N  L E   + +  L+ +  S+YV+LSN  +  GKW+  S +RR+MK  G+
Sbjct: 373 LAACRTHGNNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASQMRRKMKGLGL 432

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            + PG S IEI    HVF+ GD  H     I  VL   +  +R
Sbjct: 433 KKQPGFSSIEIDDCTHVFMAGDSAHVETAIIREVLELVSSDLR 475



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 114/251 (45%), Gaps = 36/251 (14%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
            S +  +  ++FD++P+ +++S T +I  F K+  +EEA+  F  M +  +RP      +
Sbjct: 143 RSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIA 202

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + + T L  L+ G  +H +      ++NV V ++++DLY +   +E A  VF+      
Sbjct: 203 ALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRT 262

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS+                               N++I G++  G   E++  F +M  
Sbjct: 263 VVSW-------------------------------NSVIVGFAANGNAHESLVYFRKMQE 291

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG---KLDVFVGNSLISFYAKCGS 290
           EG  P+  T   A+ A +++  +  G  +     +  G   +++ +    L+  Y++ G 
Sbjct: 292 EGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHY--GCLVDLYSRAGR 349

Query: 291 MEDSLLVFDKL 301
           +ED+L V + +
Sbjct: 350 LEDALKVIESM 360


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 164/512 (32%), Positives = 270/512 (52%), Gaps = 47/512 (9%)

Query: 13  SLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV---HQVFDEVP 69
           SL +L ++ +    Y I+T +        P + T  ++  + +   +S+   H++FD++P
Sbjct: 47  SLRELKQIQA----YTIKTHQ------NNPTVLTKLINFCTSNPTIASMDHAHRMFDKIP 96

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
             ++V   T+   +A+      AI L S++L   + P ++TF S++ +   L+ L  GKQ
Sbjct: 97  QPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQ 156

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           LH  A K+G+  N++V   ++++Y   + ++ A RVF+    P VV+Y  +I    +  R
Sbjct: 157 LHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSR 216

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
             +AL LF+E+                                  GL P   T+  A+ +
Sbjct: 217 PNEALALFRELQ-------------------------------ESGLKPTDVTMLVALSS 245

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A + AL +G+  H    K      V V  +LI  YAKCGS++D++ VF  +  R+   W
Sbjct: 246 CALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAW 305

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           +A+I  YA +G G +AI     M+   ++P+ +T LG+L+AC+HTGLVE+GY YF     
Sbjct: 306 SAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTH 365

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
           E   +   +HY CM+DLL R+GR +EA +F+ +LP  P    W+ LL  C  H NVE+ +
Sbjct: 366 EYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAK 425

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
              +RI  LD      YV+LSN  +  G+WD+V+++R+ M +KG  +VPGCS IE+ + V
Sbjct: 426 LVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVV 485

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
           H F +GD  H  +  ++  L    E ++E +L
Sbjct: 486 HEFFSGDGVHSTSTILHHAL---DELVKELKL 514



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 142/304 (46%), Gaps = 39/304 (12%)

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           + P   +  S+IP  T+L +L   KQ+ A+  K   Q+N  V + +++            
Sbjct: 31  LEPPSSSILSLIPKCTSLREL---KQIQAYTIKTH-QNNPTVLTKLINFC---------- 76

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                T NP + S              + A ++F ++P  ++V +N M  GY++      
Sbjct: 77  -----TSNPTIAS-------------MDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLR 118

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A+ L  ++L  GL+P+  T    + A A + AL  GK  H  AVK     +++V  +LI+
Sbjct: 119 AILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLIN 178

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            Y  C  ++ +  VFDK+ E  +V +NA+I   A+N R  EA+  F  ++ +G++P  VT
Sbjct: 179 MYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVT 238

Query: 344 LLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
           +L  L +C   G ++ G   + Y  +   +    +       ++D+ ++ G   +A    
Sbjct: 239 MLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVN----TALIDMYAKCGSLDDAVSVF 294

Query: 401 YDLP 404
            D+P
Sbjct: 295 KDMP 298


>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
           sativa Japonica Group]
          Length = 391

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 152/392 (38%), Positives = 226/392 (57%), Gaps = 39/392 (9%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +H    K GL S+ FV S ++D+Y K                          CG++    
Sbjct: 2   VHDKVIKSGLGSDAFVASTVVDMYCK--------------------------CGII---- 31

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            ++A KL   +  + VVSWNA++ G+S    +EEA   F EML  GL P+H T    +  
Sbjct: 32  -DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 90

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            AN+A + +GK  H   +K     D ++ ++L+  YAKCG M DSLLVF+K+ +R+ V+W
Sbjct: 91  CANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 150

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF----S 365
           NA+ICGYA +G G EA+  FERM+   + PN  T + +L AC+H GL + G  YF    +
Sbjct: 151 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 210

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
             KLE P +   EH+ACMVD+L RS   +EA +F+  +PF      WK LL  C+I  +V
Sbjct: 211 HYKLE-PQL---EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDV 266

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           E+ E AA  +L LDP+D S Y++LSN  + +GKW +VS  RR +K+  + + PGCSWIE+
Sbjct: 267 EIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEV 326

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +S++H F+ GD+ H  + E+Y +L     +++
Sbjct: 327 QSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 358



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 76/149 (51%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++ D +    VVS   I+  F+     EEA   FS ML + ++P  FTF +V+ +   L
Sbjct: 35  QKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANL 94

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             + LGKQ+H    K  +  + ++ S ++D+Y K   + ++  VFE     + VS+  MI
Sbjct: 95  ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 154

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNA 210
           CG        +AL++F+ M   NVV  +A
Sbjct: 155 CGYALHGLGVEALRMFERMQKENVVPNHA 183


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 250/455 (54%), Gaps = 11/455 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-----IRPSEFTFGSVIPSS 118
           +F  V D N      +I  +     Y  AI +  +ML  +       P +FTF  V+   
Sbjct: 42  LFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXC 101

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L   NLGKQ+H  A K G +SN  + ++++++Y+K  S+++A RVFE+    + VS+ 
Sbjct: 102 AGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWN 161

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
           T+I G ++  +   A  +F+E+  + + SW A++ GY++ G +  A+  F  M    +  
Sbjct: 162 TLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIEL 221

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
           +  +L   + A A + AL +GK  H  A K     D+ V N+LI  YAK GSM++   +F
Sbjct: 222 DEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLF 281

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
            K+ ER++++W+ +I G A +GR  EAIE F+ M+   + PN +T +GLL AC H GL+ 
Sbjct: 282 HKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLN 341

Query: 359 KGYSYFSQAKLED---PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           +G  YF   + +D   PG+   EHY C+V+LL  SGR  +A E +  +P  P    W  L
Sbjct: 342 EGLGYFESMERDDNIEPGV---EHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLL 398

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
              C+ H N+E+   A   +L L+P+D  +Y+ LSN  +  GKWD VS +R+ M  K M 
Sbjct: 399 SSSCRSHGNLEIVAIAMEHLLELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMSSKYMN 458

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           + PGCS IE+ + V  + +GD +   +  IY VL+
Sbjct: 459 KTPGCSSIEVDNMVQEYASGDDSKPFSKAIYRVLK 493


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 260/453 (57%), Gaps = 20/453 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NI 104
           T  ++  ++     +    FD++P+ +VVS   ++  +A+    EE I LF+ ML   N+
Sbjct: 189 TTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNV 248

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQL-HAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +P E T+ +VI S ++L D  L + +      KVG + N FV +A+LD++ K  ++E A 
Sbjct: 249 QPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAH 308

Query: 164 RVFEDT---HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
           ++FE        + V +  MI    +      A  LF +MP R+ VSWN+MI GY+Q G 
Sbjct: 309 KIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGE 368

Query: 221 NEEAVNLFIEML--REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG----KLD 274
           + +A+ LF EM+   +   P+  T+     A  ++  LG+G      AV  L     ++ 
Sbjct: 369 SFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGN----WAVSILKVNHIQIS 424

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
           + V NSLI+ Y++CGSM+D++L+F ++  R++V++N +I G+A++G G E+IE   +M+ 
Sbjct: 425 ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKE 484

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +GI P+ +T + +L AC+H GL+++G   F   K  D      +HYACM+D+L R+GR +
Sbjct: 485 DGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFPDV-----DHYACMIDMLGRAGRLE 539

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           EA + +  +P +P  G + +LL    IH  VELGE AA ++  ++P +  +Y +LSN  +
Sbjct: 540 EAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNIYA 599

Query: 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
            AG+W     +R  M+++G+ +  G SW+E  S
Sbjct: 600 SAGRWKEGDKVRDTMRKQGVKKTTGLSWLEHNS 632



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 202/458 (44%), Gaps = 82/458 (17%)

Query: 88  HYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
           H +  + LF  ML   +I+P+  +F SV+  S   E +       A   K G   + +V 
Sbjct: 68  HSQVFVSLFKHMLQHCDIKPNA-SFYSVMMKSAGSESM----LFLAHVLKSGYDRDHYVR 122

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNP---------------------------------- 172
           + IL +Y K   IE A ++F++  +                                   
Sbjct: 123 NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 182

Query: 173 -NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            NV+++TTMI G  K+   + A   F +MP R+VVSWNAM+ GY+Q G  EE + LF +M
Sbjct: 183 RNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM 242

Query: 232 LREGLV-PNHSTLPCAIIAAANIAALGMGKS-----------------------FHA--- 264
           L  G V P+ +T    I + +++    + +S                        HA   
Sbjct: 243 LSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCG 302

Query: 265 ---CAVKFLGKLDVF------VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
               A K   +L V+        N++IS YA+ G +  +  +FDK+ +R+ V+WN++I G
Sbjct: 303 NLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAG 362

Query: 316 YAQNGRGEEAIEFFERM--RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
           Y QNG   +AI+ FE M    +  +P+ VT++ +  AC H G +  G    S  K+    
Sbjct: 363 YTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHI- 421

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
            +    Y  ++++ SR G  ++A     ++     + +   + G  +    +E  E  ++
Sbjct: 422 QISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSK 481

Query: 434 -RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            +   ++P+ + +Y+ +  A S AG  D    +   +K
Sbjct: 482 MKEDGIEPDRI-TYIAILTACSHAGLLDEGQRLFESIK 518



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEA-VNLFIEMLRE-GLVPNHSTLPCAIIAAANI 253
           +F    H +V  +  M+  YSQ G + +  V+LF  ML+   + PN S     + +A + 
Sbjct: 43  IFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSE 102

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           + L     F A  +K     D +V N ++  YAK G +E +  +FD++ +R +  WN +I
Sbjct: 103 SML-----FLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMI 157

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            GY + G  EEA   F  M    I  N +T     W    TG  +KG
Sbjct: 158 SGYWKCGNEEEASTLFHVMGDQEISRNVIT-----WTTMITGHAKKG 199


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 163/471 (34%), Positives = 257/471 (54%), Gaps = 43/471 (9%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   + F    +VFD++PD N  S T  I  +       EAI +F R+L + +RP  F+
Sbjct: 156 CGFIDNAF----KVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFS 211

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              V+ +     DL  G+ +  + T+ G+  NVFV +A++D Y K  ++E A  VF+   
Sbjct: 212 LVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDG-- 269

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        M  +N+VSW++MI GY+  G  +EA++LF +
Sbjct: 270 -----------------------------MLEKNIVSWSSMIQGYASNGLPKEALDLFFK 300

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGK--SFHACAVKFLGKLDVFVGNSLISFYAKC 288
           ML EGL P+   +   + + A + AL +G   S      +FL   +  +G +LI  YAKC
Sbjct: 301 MLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLD--NSVLGTALIDMYAKC 358

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           G M+ +  VF  + +++ V WNA I G A +G  ++A+  F +M  +GI+P+  T +GLL
Sbjct: 359 GRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLL 418

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFD 406
            AC H GLVE+G  YF+   +E    L PE  HY CMVDLL R+G   EA + +  +P +
Sbjct: 419 CACTHAGLVEEGRRYFNS--MECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPME 476

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
                W ALLGGC++H + +L E   ++++AL+P    +YV+LSN  + + KW+  + IR
Sbjct: 477 ANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIR 536

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
             M E+G+ ++PG SWIE+   VH F+ GD +H ++++IYA L    + ++
Sbjct: 537 SIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLK 587



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 137/292 (46%), Gaps = 35/292 (11%)

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           K +HA   ++GL  + ++ + +L       +   + R+ + T  PN+  + TMI GL+  
Sbjct: 27  KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
           + F+                               E++ ++  M +EGL P+  T P  +
Sbjct: 87  DCFQ-------------------------------ESIEIYHSMRKEGLSPDSFTFPFVL 115

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A A +    +G   H+  VK   + D FV  SLI+ Y KCG ++++  VFD + ++N  
Sbjct: 116 KACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFA 175

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +W A I GY   G+  EAI+ F R+   G+RP+  +L+ +L AC  TG +  G   +   
Sbjct: 176 SWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSG--EWIDE 233

Query: 368 KLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
            + + GM++    A  +VD   + G  + A+  ++D   +  I  W +++ G
Sbjct: 234 YITENGMVRNVFVATALVDFYGKCGNMERARS-VFDGMLEKNIVSWSSMIQG 284


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 160/488 (32%), Positives = 262/488 (53%), Gaps = 46/488 (9%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNI---------RPSEFTFGSVIPSSTALEDL 124
           + A  I+  F   H     I L+S     ++          PS   + S+I + T  +  
Sbjct: 71  IHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQY 130

Query: 125 NLGKQLH-AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           N   +++     K GL+ +VF+G+ ++D+Y K+  ++ A  VF+     +VV++  MI G
Sbjct: 131 NEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 190

Query: 184 LLKRER-------------------------------FEDALKLFQEMPHRNVVSWNAMI 212
           L + E                                F + L+LF +M   NV +WN +I
Sbjct: 191 LSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV-TWNVII 249

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
             Y Q G  +EA++ F +M  E   PN  T    + AAA +AA   G +FHAC ++    
Sbjct: 250 AAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFL 309

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            +  VGNSLI  YAKCG ++ S  +F+++  ++ V+WNA++ GYA +G G+ AI  F  M
Sbjct: 310 SNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLM 369

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRS 390
           + + ++ + V+ + +L AC H GLVE+G   F    + D   +KP  EHYACMVDLL R+
Sbjct: 370 QESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHS--MSDKYHIKPDLEHYACMVDLLGRA 427

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450
           G F E   F+  +P +P  G W ALLG C++HSNV+LGE A   ++ L+P + + +V+LS
Sbjct: 428 GLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLS 487

Query: 451 NALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           +  + +G+W +    R +M + G+ + PGCSW+E+K+KVH F  GD++H   + ++ +  
Sbjct: 488 SIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWN 547

Query: 511 SCTEQIRE 518
           +  E++ +
Sbjct: 548 TLLEKMEK 555


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/475 (31%), Positives = 255/475 (53%), Gaps = 31/475 (6%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A  T  +S  S S + +  H++FDE+PD +VV+ T +   +     + EAI LF +M+ +
Sbjct: 147 AAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEM 206

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            ++P  +    V+ +   + DL+ G+ +  +  ++ +Q N FV + +++LY K   +E+A
Sbjct: 207 GVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKA 266

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
             VF+                                M  +++V+W+ MI GY+     +
Sbjct: 267 RSVFD-------------------------------SMVEKDIVTWSTMIQGYASNSFPK 295

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           E + LF++ML+E L P+  ++   + + A++ AL +G+   +   +     ++F+ N+LI
Sbjct: 296 EGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALI 355

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKCG+M     VF ++ E++IV  NA I G A+NG  + +   F +    GI P+G 
Sbjct: 356 DMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T LGLL  C H GL++ G  +F+            EHY CMVDL  R+G   +A   + D
Sbjct: 416 TFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICD 475

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +P  P    W ALL GC++  + +L E   + ++AL+P +  +YV LSN  SV G+WD  
Sbjct: 476 MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEA 535

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + +R  M +KGM ++PG SWIE++ KVH F+  D++H ++D+IYA L     ++R
Sbjct: 536 AEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMR 590



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 143/293 (48%), Gaps = 39/293 (13%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N+    ++I  F   H + E + LF  +    +    FTF  V+ + T      LG  LH
Sbjct: 75  NIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLH 134

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           +   K G   +V   +++L +Y                                   R  
Sbjct: 135 SLVVKCGFNHDVAAMTSLLSIYSG-------------------------------SGRLN 163

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           DA KLF E+P R+VV+W A+  GY+ +GR+ EA++LF +M+  G+ P+   +   + A  
Sbjct: 164 DAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACV 223

Query: 252 NIAALGMGKSFHACAVKFLGKLDV----FVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
           ++  L  G+      VK++ ++++    FV  +L++ YAKCG ME +  VFD + E++IV
Sbjct: 224 HVGDLDSGEWI----VKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIV 279

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           TW+ +I GYA N   +E IE F +M    ++P+  +++G L +C   G ++ G
Sbjct: 280 TWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 145/295 (49%), Gaps = 18/295 (6%)

Query: 178 TTMICGLLKRERFEDALK----LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           T ++  LLKR  F    K    LF      N+  +N++I G+       E ++LF+ + +
Sbjct: 45  TFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRK 104

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            GL  +  T P  + A    ++  +G   H+  VK     DV    SL+S Y+  G + D
Sbjct: 105 HGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLND 164

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +FD++ +R++VTW A+  GY  +GR  EAI+ F++M   G++P+   ++ +L AC H
Sbjct: 165 AHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVH 224

Query: 354 TGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            G ++ G     Y  + +++    ++      +V+L ++ G+ ++A+  ++D   +  I 
Sbjct: 225 VGDLDSGEWIVKYMEEMEMQKNSFVR----TTLVNLYAKCGKMEKARS-VFDSMVEKDIV 279

Query: 411 FWKALLGGCQIHSNVELGEFAARRILA--LDPEDVSSYVMLSNALSVA----GKW 459
            W  ++ G   +S  + G     ++L   L P+  S    LS+  S+     G+W
Sbjct: 280 TWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEW 334


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 165/517 (31%), Positives = 269/517 (52%), Gaps = 58/517 (11%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
             S  ++F+++PD N VS  T++  FA+     EA  LF RM   N+        + +  
Sbjct: 220 LGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQD 279

Query: 118 STALEDLNLGKQLH-----AWAT------KVGL------------QSNVFVGSAILDLYI 154
               E + L K+       +W T      +VG               +V   +A++   I
Sbjct: 280 LQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLI 339

Query: 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
           +   I+EA++VF   +  + + + +MI G  +  R  +AL LF++MP +N VSWN MI G
Sbjct: 340 QNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISG 399

Query: 215 YSQTGRNEEAVNLF-------------------------------IEMLREGLVPNHSTL 243
           Y+Q G  + A  +F                               + M +EG  P+ ST 
Sbjct: 400 YAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTF 459

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
            C++ + AN+AAL +GK  H   +K     D+FV N+LI+ YAKCG ++ +  VF  +  
Sbjct: 460 ACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEG 519

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            ++++WN++I GYA NG   EA   FE+M   G  P+ VT +G+L AC+H GL  +G   
Sbjct: 520 VDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDL 579

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F    + +   ++P  EHY+C+VDLL R GR +EA   +  +      G W +LL  C++
Sbjct: 580 FKC--MIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRV 637

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H N+ELG+ AA R+L L+P + S+Y+ LSN  + AG+W++V  +R  M+E+   ++PGCS
Sbjct: 638 HKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCS 697

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           WIE+++++  FV+ D      + I  +L + +  +R+
Sbjct: 698 WIEVQNQIQNFVSDDPGKLRTESIKIILNTLSAHMRD 734



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 41/336 (12%)

Query: 49  VSCGSESDKFSSVHQVFDEVPD-LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           ++C +         ++F+ VPD L+      +I  +AK+  +++A  +F +M + ++   
Sbjct: 117 ITCYTRKGMLEKARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDL--- 173

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             ++ S++   T    + L  +          + NV   + ++  ++    +  A  +FE
Sbjct: 174 -VSYNSMLAGYTQNGKMGLAMKFFERMA----ERNVVSWNLMVAGFVNNCDLGSAWELFE 228

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
              +PN VS+ TM+CG  +  +  +A KLF  MP +NVVSWNAMI  Y Q  + +EAV L
Sbjct: 229 KIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKL 288

Query: 228 FIEM---------------LREGLVPN----HSTLPCAIIAAANIAALGM---GKSFHAC 265
           F E                +R G +      ++ +P   +AA      G+   G+   A 
Sbjct: 289 FKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEAS 348

Query: 266 AV-KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
            V   L K D    NS+I+ Y + G M ++L +F ++  +N V+WN +I GYAQ G  + 
Sbjct: 349 QVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDR 408

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           A E FE M +  +         + W    TG ++ G
Sbjct: 409 ATEIFEAMGVRNV---------ISWNSLITGFLQNG 435



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 22/332 (6%)

Query: 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201
           NVF  +  +    K   I+EA RVF +  + N  +Y +M+    K  R  DA +LF +M 
Sbjct: 16  NVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMS 75

Query: 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261
            RN+VSWN MI GY      EEA  LF       L+        A++        GM + 
Sbjct: 76  QRNLVSWNTMIAGYLHNNMVEEAHKLF------DLMAERDNFSWALMITC-YTRKGMLEK 128

Query: 262 FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR 321
                     KLD    N++I+ YAK G  +D+  VF+K+  +++V++N+++ GY QNG+
Sbjct: 129 ARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGK 188

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA 381
              A++FFERM    +    + + G +  C      + G ++    K+ DP  +    + 
Sbjct: 189 MGLAMKFFERMAERNVVSWNLMVAGFVNNC------DLGSAWELFEKIPDPNAVS---WV 239

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP- 440
            M+   +R G+  EA++    +P    +  W A++       ++++ E  A ++    P 
Sbjct: 240 TMLCGFARHGKIVEARKLFDRMPCKNVVS-WNAMIAA--YVQDLQIDE--AVKLFKETPY 294

Query: 441 EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
           +D  S+  + N     GK D    +  +M  K
Sbjct: 295 KDCVSWTTMINGYVRVGKLDEAREVYNQMPYK 326



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 162/373 (43%), Gaps = 31/373 (8%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V+  +++ + S   Q+FD++   N+VS  T+I  +   +  EEA  LF  M         
Sbjct: 55  VTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLM----AERDN 110

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           F++  +I   T    L   ++L      V  + +    +A++  Y K    ++A +VFE 
Sbjct: 111 FSWALMITCYTRKGMLEKARELFEL---VPDKLDTACWNAMIAGYAKKGRFDDAEKVFEK 167

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               ++VSY +M+ G  +  +   A+K F+ M  RNVVSWN M+ G+        A  LF
Sbjct: 168 MPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELF 227

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL---DVFVGNSLISFY 285
            E + +    +  T+ C       I            A K   ++   +V   N++I+ Y
Sbjct: 228 -EKIPDPNAVSWVTMLCGFARHGKIVE----------ARKLFDRMPCKNVVSWNAMIAAY 276

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            +   +++++ +F +   ++ V+W  +I GY + G+ +EA E + +M    +      + 
Sbjct: 277 VQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMS 336

Query: 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
           GL+      G +++    FSQ    D        +  M+    +SGR  EA      +P 
Sbjct: 337 GLI----QNGRIDEASQVFSQLNKRDAIC-----WNSMIAGYCQSGRMSEALNLFRQMPV 387

Query: 406 DPGIGFWKALLGG 418
              +  W  ++ G
Sbjct: 388 KNAVS-WNTMISG 399



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 31/220 (14%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  +++ +     ++F+ +   NV+S  ++I  F +   Y +A+     M     +P +
Sbjct: 397 ISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQ 456

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            TF   + S   L  L +GKQLH    K G  +++FV +A++ +Y K   ++ A +VF+D
Sbjct: 457 STFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKD 516

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               +++S                               WN++I GY+  G   EA   F
Sbjct: 517 IEGVDLIS-------------------------------WNSLISGYALNGYANEAFWAF 545

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
            +M  EG VP+  T    + A ++      G     C ++
Sbjct: 546 EQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIE 585


>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 500

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 159/460 (34%), Positives = 265/460 (57%), Gaps = 8/460 (1%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD +   +     T+   +A       A+ L   ML     P  +TF  ++ + +AL  
Sbjct: 44  LFDAIHHPSTYLYNTMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAH 103

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G++LH  A K GL  +VFV ++++ LY   S ++ A RVF+     ++ S+TT++  
Sbjct: 104 LPKGQELHCQALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLAC 163

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                  + A K+F EMP R+V+S++AMI  Y +  R  EA++LF E+    + P+ S +
Sbjct: 164 YANSCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCV 223

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              + A AN+ AL +G+  ++   +  G  +D  +  +LI  + KCGS+E +LLVF+   
Sbjct: 224 MSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAK 283

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           E+++  W A++ G A +G GE+ IE FE+M  +G++PNGVT + LL  C+H+GLV +G  
Sbjct: 284 EKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLY 343

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           YF   ++E    ++P  EH+ C+VDLL R+G   +A + + ++PF+P    W +LL  C+
Sbjct: 344 YFD--RMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACR 401

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           ++ NVE+GE AA+ ++  +P + + Y+ L +    AG+WD V  ++ +MKE G  + PGC
Sbjct: 402 VYKNVEIGELAAQWLIKDEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGC 461

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFE 520
           S IE+    + FV GD++H    EI   L   ++ IREF+
Sbjct: 462 SLIEVGGICYEFVVGDKSHPCAVEICLNL---SKAIREFQ 498



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 6/208 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  ++C + S    +  +VFDE+P+ +V+S + +I  + + + + EA+ LF  +  + I 
Sbjct: 158 TTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIE 217

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKV-GLQSNVFVGSAILDLYIKLSSIEEATR 164
           PS+    SV+ +   L  L++G+ ++++  +  G   +  + +A++D++ K  SIE A  
Sbjct: 218 PSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALL 277

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGR 220
           VFE     +V  +T M+ GL      E  ++ F++M    V    V++ A++ G S +G 
Sbjct: 278 VFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGL 337

Query: 221 NEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
             E +  F  M  + G+ P      C +
Sbjct: 338 VNEGLYYFDRMESDFGVEPTVEHFGCVV 365


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 168/494 (34%), Positives = 272/494 (55%), Gaps = 37/494 (7%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F S  +VFD V   NV     +I    + +   +AI L+  M++ + RP+++T+ +V+ +
Sbjct: 88  FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKA 147

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP-NVVS 176
            +    +  G Q+HA   K GL  +  + S+ + +Y     + EA R+ +D     + V 
Sbjct: 148 CSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVC 207

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVS-WNAMIGGYSQTG--------------RN 221
           +  MI G L+    E A +LF+ MP R+++S WNAMI G+S+ G              R+
Sbjct: 208 WNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERD 267

Query: 222 E-----------------EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
           E                 EA+ +F +M +E + P    LP  + A AN+ AL  G+  H 
Sbjct: 268 EISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHT 327

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
            A +   +LD  +G SL+  YAKCG ++ +  VF+K++ + + +WNA+I G A +GR E+
Sbjct: 328 YAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAED 387

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384
           AI+ F +M    I PN +T +G+L AC H GLV+KG + F+  + E     + EHY C+V
Sbjct: 388 AIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIV 444

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444
           DLL R+G   EA++ +  +P +P    W ALLG C+ H NVELGE   + +L L+P++  
Sbjct: 445 DLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSG 504

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI-KSKVHVFVTGDRNHHMND 503
            Y +LSN  + AG+W+ V  +R+ MKE+G+   PG S I++ + +VH F+ GD +H    
Sbjct: 505 RYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVK 564

Query: 504 EIYAVLRSCTEQIR 517
           +IY +L    E+++
Sbjct: 565 DIYQMLDKVKERLQ 578



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 155/350 (44%), Gaps = 49/350 (14%)

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS-----SIEEATRVFEDTHNP 172
           +T+L  L   KQ HA   + G   + ++  +++  Y  +S     S E + RVF+    P
Sbjct: 45  TTSLHHL---KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKP 101

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
           NV  +  MI   ++      A+ L+ EM       N  ++ A++   S +G   E V + 
Sbjct: 102 NVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVH 161

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF-------------------------- 262
             +++ GL  +   L  AI   A+   L   +                            
Sbjct: 162 AHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEV 221

Query: 263 HACAVKFLGKLD---VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
            A    F G  D   +   N++IS +++CG +E +   FD++ ER+ ++W+A+I GY Q 
Sbjct: 222 EAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQE 281

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLK 376
           G   EA+E F +M+   IRP    L  +L AC + G +++G   ++Y  +  ++  G+L 
Sbjct: 282 GCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG 341

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
                 +VD+ ++ GR   A E    +  +  +  W A++GG  +H   E
Sbjct: 342 ----TSLVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAE 386



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 14/221 (6%)

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCG-----SMEDSLLVFDKLTERNIVTWNAVIC 314
           K  HA  ++     D ++  SL+  YA        S E SL VFD + + N+  WN +I 
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374
              +N    +AI  +  M +   RPN  T   +L AC+ +G+V +G      A L   G+
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQV--HAHLVKHGL 169

Query: 375 LKPEH-YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433
               H  +  + + +  GR  EA+  L D   +     W A++ G      VE    AAR
Sbjct: 170 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE----AAR 225

Query: 434 RILALDPED--VSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +    P+   +S++  + +  S  G  +       EMKE+
Sbjct: 226 ELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKER 266


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/446 (35%), Positives = 239/446 (53%), Gaps = 31/446 (6%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++   +VVS TTII    +    E A+  F RM   ++ P+E+TF +VI     L  
Sbjct: 274 LFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLAR 333

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  G+QLHA    +GL +++ V ++I+ +Y K                          CG
Sbjct: 334 IEWGEQLHALILHLGLAASLSVENSIMTMYAK--------------------------CG 367

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            L          +F EM  R++VSW+ +I GYSQ G   EA  L   M  EG  P    L
Sbjct: 368 QLTSSSV-----IFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFAL 422

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A  N+A L  GK  HA  +    +    V ++LI+ Y KCGS+E++  +FD    
Sbjct: 423 ASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN 482

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            +IV+W A+I GYA++G   E I+ FE++   G+RP+ VT +G+L AC+H GLV+ G+ Y
Sbjct: 483 DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRY 542

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F+    +       EHY CM+DLL R+GR  +A+  +  +PF      W  LL  C++H 
Sbjct: 543 FNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 602

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           +VE G   A RIL L+P    +++ L+N  +  GKW   ++IR+ MK KG+ + PG SWI
Sbjct: 603 DVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWI 662

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVL 509
           ++K  V  FV GDR+H   ++IY +L
Sbjct: 663 KVKDLVFAFVAGDRSHPQGEDIYNML 688



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 190/405 (46%), Gaps = 46/405 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF E+P  NVVS T II    +  + +EA+  FS M    +    +TF   + +     
Sbjct: 172 RVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSG 231

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            LN G+++HA A K G   + FV + +  +Y K                          C
Sbjct: 232 ALNYGREIHAQAMKKGFDVSSFVANTLATMYNK--------------------------C 265

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     + E  L LF++M  R+VVSW  +I    Q G+ E AV  FI M    + PN  T
Sbjct: 266 G-----KLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYT 320

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               I   AN+A +  G+  HA  +       + V NS+++ YAKCG +  S ++F ++T
Sbjct: 321 FAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT 380

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
            R+IV+W+ +I GY+Q G   EA E    MR+ G +P    L  +L AC +  ++E G  
Sbjct: 381 RRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQ 440

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            ++Y     LE   M+     + ++++  + G  +EA   ++D   +  I  W A++ G 
Sbjct: 441 LHAYVLSIGLEHTAMV----LSALINMYCKCGSIEEASR-IFDAAENDDIVSWTAMINGY 495

Query: 420 QIHSN----VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             H      ++L E   R  + L P+ V +++ + +A S AG  D
Sbjct: 496 AEHGYSREVIDLFEKIPR--VGLRPDSV-TFIGVLSACSHAGLVD 537



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 140/303 (46%), Gaps = 45/303 (14%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           +I T    CG    + +S   +F E+   ++VS +TII  +++  H  EA  L S M + 
Sbjct: 358 SIMTMYAKCG----QLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRME 413

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
             +P+EF   SV+ +   +  L  GKQLHA+   +GL+    V SA++++Y K  SIEEA
Sbjct: 414 GPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEA 473

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
           +R+F+   N ++                               VSW AMI GY++ G + 
Sbjct: 474 SRIFDAAENDDI-------------------------------VSWTAMINGYAEHGYSR 502

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSL 281
           E ++LF ++ R GL P+  T    + A ++   + +G + F+A + K+           +
Sbjct: 503 EVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCM 562

Query: 282 ISFYAKCGSMEDSLLVFDKLT-ERNIVTWNAVICGYAQNG---RGEEAIEFFERMRINGI 337
           I    + G + D+  + + +   R+ V W+ ++     +G   RG    E     RI  +
Sbjct: 563 IDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAE-----RILQL 617

Query: 338 RPN 340
            PN
Sbjct: 618 EPN 620



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 1/185 (0%)

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNHST 242
           L+K     +A ++F +M  ++ +SW  +I GY     + EA+ LF  M +  GL  +   
Sbjct: 59  LVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFI 118

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L  A  A    + +  G+  H  AVK      VFVG++L+  Y K G + +   VF ++ 
Sbjct: 119 LSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMP 178

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            RN+V+W A+I G  + G  +EA+ +F  M  + +  +  T    L AC  +G +  G  
Sbjct: 179 MRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGRE 238

Query: 363 YFSQA 367
             +QA
Sbjct: 239 IHAQA 243



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           + F+ + D+   N  +    K G + ++  +FDK+++++ ++W  +I GY       EA+
Sbjct: 41  IHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEAL 100

Query: 327 EFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYAC 382
             F+ MR+ +G+R +   L     AC     V  G   + Y  +  L +   +     + 
Sbjct: 101 LLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVG----SA 156

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           ++D+ +++G+  E +   +++P    +  W A++ G
Sbjct: 157 LLDMYTKNGKIFEGRRVFHEMPMRNVVS-WTAIITG 191


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 149/469 (31%), Positives = 270/469 (57%), Gaps = 11/469 (2%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S +     ++FDE+P+ N VS  T+I    ++   +EA+ LF RM + ++     ++ 
Sbjct: 151 AQSGRIDKALELFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDV----ISWT 206

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           +++        ++  ++L         + N+   +A++  Y   + I+EA ++F+     
Sbjct: 207 AMVDGLAKNGKVDEARRLFDCMP----ERNIISWNAMITGYTYNNRIDEADQLFQVMPER 262

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +  S+ TMI G ++      A  LF  MP +NV+SW AMI GY +   NEEA+ +F +ML
Sbjct: 263 DFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKML 322

Query: 233 REGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           R+G V PN  T    + A +++A L  G+  H    K + + +  V ++LI+ Y+K G +
Sbjct: 323 RDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQENEVVTSALINMYSKSGEL 382

Query: 292 EDSLLVFDK--LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
             +  +FD   + +R++++WN++I  YA +G G+EAIE +++MR +G +P+ VT L LL+
Sbjct: 383 IAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLF 442

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           AC+H GLVEKG  +F +   ++   L+ EHY C+VDL  R+GR K+   F+         
Sbjct: 443 ACSHAGLVEKGMEFFKELVRDESLPLREEHYTCLVDLCGRAGRLKDVLNFINCDDARLSR 502

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
            F+ A+L  C +HS V + +   +++L    +D  +YVM+SN  + +GK +  + +R +M
Sbjct: 503 SFYGAILSACNVHSEVSIAKEVVKKVLETGSDDAGTYVMMSNIYAASGKREKAAEMRMKM 562

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           KEKG+ + PGCSW++I ++ H+FV GD++H   + + +++     ++R+
Sbjct: 563 KEKGLKKQPGCSWVKIGNQTHLFVVGDKSHPQFEALDSIVSDLRNKMRK 611



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 189/363 (52%), Gaps = 40/363 (11%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           K +   ++FD +P+ +VV+ T +I  + K  +  EA  LF R   ++ R +  T+ +++ 
Sbjct: 61  KLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDR---VDSRKNVVTWTAMVS 117

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                + L++ + L         + N+   + ++D Y +   I++A  +F++    N VS
Sbjct: 118 GYLRSKQLSVAETLFQEMP----ERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNTVS 173

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           + TMI  L++R R ++A+ LF+ MP ++V+SW AM+ G ++ G+ +EA  LF        
Sbjct: 174 WNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLF-------- 225

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFH------ACAVKFLGKLDVFVGNSLISFYAKCGS 290
                 +P   I + N  A+  G +++          + + + D    N++I+ + +   
Sbjct: 226 ----DCMPERNIISWN--AMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNRE 279

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLW 349
           +  +  +FD++ ++N+++W A+I GY +N   EEA++ F +M  +G ++PN  T + +L 
Sbjct: 280 INRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILS 339

Query: 350 ACNH-TGLVE--KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           AC+   GLVE  + +   S++  ++  ++     + ++++ S+SG    A++      FD
Sbjct: 340 ACSDLAGLVEGQQIHQLISKSVHQENEVVT----SALINMYSKSGELIAARKM-----FD 390

Query: 407 PGI 409
            G+
Sbjct: 391 NGL 393



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 127/283 (44%), Gaps = 53/283 (18%)

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
           ++  +  P V     +I  L K  +  +A KLF  +P R+VV+W  +I GY + G   EA
Sbjct: 37  IYSSSSKPRVPRPEWLIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREA 96

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
             LF                                       +   + +V    +++S 
Sbjct: 97  RELFD--------------------------------------RVDSRKNVVTWTAMVSG 118

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y +   +  +  +F ++ ERNIV+WN +I GYAQ+GR ++A+E F+ M       N V+ 
Sbjct: 119 YLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEM----PERNTVSW 174

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
             ++ A    G +++  + F +  ++D        +  MVD L+++G+  EA+  L+D  
Sbjct: 175 NTMIKALVQRGRIDEAMNLFERMPIKDVI-----SWTAMVDGLAKNGKVDEARR-LFDCM 228

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSY 446
            +  I  W A++ G   ++ ++     A ++  + PE D +S+
Sbjct: 229 PERNIISWNAMITGYTYNNRID----EADQLFQVMPERDFASW 267


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/474 (33%), Positives = 264/474 (55%), Gaps = 38/474 (8%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  +E +   SV ++FD +  ++++S  T+I   A+     +A  LF RM    I+P+ 
Sbjct: 399 LSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNS 458

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +T  S++ +   +  L+ G+ +H +  K  ++ N  + +A+ D+Y+     +EAT     
Sbjct: 459 YTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCG--DEAT----- 511

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                   A  LF+  P R+++SWNAMI  Y +  +  +A+ LF
Sbjct: 512 ------------------------ARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLF 547

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYA 286
             M+ E   PN  T+   + +  ++A L  G+S HA   +  F   LD+ + N+ I+ YA
Sbjct: 548 HRMISEA-EPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYA 606

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           +CGS++ +  +F  L +RNI++WNA+I GY  NGRG +A+  F +M  +G RPNGVT + 
Sbjct: 607 RCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVS 666

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLP 404
           +L AC+H+G +E G   F  + ++D   + PE  HY+C+VDLL+R G   EA+EF+  +P
Sbjct: 667 VLSACSHSGFIEMGLQLF-HSMVQDFN-VTPELVHYSCIVDLLARGGCIDEAREFIDSMP 724

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
            +P    W+ALL  C+ +S+ +  +    ++  L+P +  +YV+LSN  + AG W  V  
Sbjct: 725 IEPDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRR 784

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           IR  +KEKG+ + PG SWI +K++VH F  GDR+H  +D+IYA L      +RE
Sbjct: 785 IRTWLKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRE 838



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 168/355 (47%), Gaps = 34/355 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD +   N+VS   +I  +     Y +A+ LF +ML+  ++    T    + +   L  
Sbjct: 211 LFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGS 270

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGKQ+H  A K     ++++ +A+L++Y    S+E + ++FE                
Sbjct: 271 LKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFE---------------- 314

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                           +P+R+   WN+MI  Y+  G +EEA++LFI M  EG+  +  T+
Sbjct: 315 ---------------SVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTV 359

Query: 244 PCAIIAAANIAA-LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
              +     +A+ L  GKS HA  +K   ++D  +GN+L+S Y +   +E    +FD++ 
Sbjct: 360 VIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMK 419

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             +I++WN +I   A+N    +A E FERMR + I+PN  T++ +L AC     ++ G S
Sbjct: 420 GVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRS 479

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
                      + +P   A + D+    G    A++     P D  +  W A++ 
Sbjct: 480 IHGYVMKHSIEINQPLRTA-LADMYMNCGDEATARDLFEGCP-DRDLISWNAMIA 532



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 145/289 (50%), Gaps = 33/289 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD + D +VV    ++  +     YEEA+ L   M   N+RP+  T  +++ +     +
Sbjct: 110 VFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASE 169

Query: 124 LNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           L LG+ +H +  + G+  SN  V +A++  Y++        RV                 
Sbjct: 170 LRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFD-----MRVLP--------------- 209

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                        LF  M  RN+VSWNAMI GY   G   +A+ LF++ML + +  +  T
Sbjct: 210 ------------LLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVT 257

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +  A+ A A + +L +GK  H  A+KF    D+++ N+L++ Y+  GS+E S  +F+ + 
Sbjct: 258 MLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVP 317

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            R+   WN++I  YA  G  EEA++ F RM+  G++ +  T++ +L  C
Sbjct: 318 NRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 366



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 162/368 (44%), Gaps = 35/368 (9%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S +    S HQ+F+ VP+ +     ++I  +A    +EEA+ LF RM    ++  E T  
Sbjct: 301 SNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVV 360

Query: 113 SVIPSSTALED-LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            ++     L   L  GK LHA   K G++ +  +G+A+L +Y +L+ +E   ++F+    
Sbjct: 361 IMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFD---- 416

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                                       M   +++SWN MI   ++     +A  LF  M
Sbjct: 417 ---------------------------RMKGVDIISWNTMILALARNTLRAQACELFERM 449

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
               + PN  T+   + A  ++  L  G+S H   +K   +++  +  +L   Y  CG  
Sbjct: 450 RESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDE 509

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
             +  +F+   +R++++WNA+I  Y +N +  +A+  F RM I+   PN VT++ +L + 
Sbjct: 510 ATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRM-ISEAEPNSVTIINVLSSF 568

Query: 352 NHTGLVEKGYSYFSQAKLEDPGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
            H   + +G S  +        + L        + + +R G  + A+     LP    I 
Sbjct: 569 THLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP-KRNII 627

Query: 411 FWKALLGG 418
            W A++ G
Sbjct: 628 SWNAMIAG 635



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 133/284 (46%), Gaps = 33/284 (11%)

Query: 78  TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV 137
           ++I   A   + +  +  +++M  L + P+  T   V+ +  A   +  GK +H      
Sbjct: 23  SVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGT 82

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
            L  +V VG+A++D Y K                          CG +     EDA  +F
Sbjct: 83  DLMDDVRVGTAVVDFYCK--------------------------CGFV-----EDARCVF 111

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
             M  R+VV WNAM+ GY   G  EEA+ L  EM RE L PN  T+   ++A    + L 
Sbjct: 112 DAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELR 171

Query: 258 MGKSFHA-CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
           +G+  H  C    +   +  V  +LI FY +   M    L+FD +  RNIV+WNA+I GY
Sbjct: 172 LGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGY 230

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
              G   +A+E F +M ++ ++ + VT+L  + AC   G ++ G
Sbjct: 231 YDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLG 274



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 82/144 (56%)

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267
           WN++I   +    ++  ++ + +M   G++PN++TLP  + A A   A+  GKS H    
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 80

Query: 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327
                 DV VG +++ FY KCG +ED+  VFD +++R++V WNA++ GY   G  EEA+ 
Sbjct: 81  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 140

Query: 328 FFERMRINGIRPNGVTLLGLLWAC 351
               M    +RPN  T++ LL AC
Sbjct: 141 LVREMGRENLRPNSRTMVALLLAC 164


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/520 (34%), Positives = 280/520 (53%), Gaps = 14/520 (2%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C  + SL+   KLH++     + +   +   L   A+     SCG  S    S   
Sbjct: 21  LLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLN--ALHHLYASCGVTS----SARH 74

Query: 64  VFDEVP--DLNVVSATTIIGRFAKQHHYE--EAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           +F ++P    +V   TT++     QH  +  E  + F  M    +   +    SV    T
Sbjct: 75  LFYQIPRSHKDVTDWTTLLTSLV-QHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCT 133

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            +EDL +G+Q      K+GL   V V +AI+++Y+K   +EE  RVF + +  NVVS++T
Sbjct: 134 RVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWST 193

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVP 238
           ++ G++K E  E+   +F EMP RN V W  MI GY   G + E   L  EM LR  L  
Sbjct: 194 LLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGL 253

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK-LDVFVGNSLISFYAKCGSMEDSLLV 297
           N  TL   + A A    + MG+  H  A+K +G+ + + VG +L+  YAKCG ++ +  V
Sbjct: 254 NFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKV 313

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F  L +RN+V WNA++ G A +GRG+  ++ F +M I   +P+ +T + +L AC+H+GLV
Sbjct: 314 FKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKM-IEEAKPDDLTFMAVLSACSHSGLV 372

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           ++GY YF   + E     K EHYACMVD+L R+G  +EA   +  +P  P      +LLG
Sbjct: 373 DQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLG 432

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C  H  ++LGE   + ++ +D  +   +V+LSN   + GK D  +++R+ +K KG+ +V
Sbjct: 433 SCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKV 492

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           PG S I +   +H F  GD++H +  EIY  L +  +++R
Sbjct: 493 PGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLR 532



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 163/411 (39%), Gaps = 85/411 (20%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQS---NVFVGSAILDLYIKLSSIEEATRVFE 167
           F S++ S      L+ GK+LHA     GL S   N F+ +A+  LY              
Sbjct: 18  FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYAS------------ 65

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTG-RNEEA 224
                         CG+    R      LF ++P  H++V  W  ++    Q G +  E 
Sbjct: 66  --------------CGVTSSAR-----HLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEG 106

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
              F EM +EG+V +   +    +    +  LGMG+    C VK    L V V N++++ 
Sbjct: 107 FFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNM 166

Query: 285 YAKCG-------------------------------SMEDSLLVFDKLTERNIVTWNAVI 313
           Y KCG                                +E+  +VFD++ ERN V W  +I
Sbjct: 167 YVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMI 226

Query: 314 CGYAQNGRGEEAIEFFERMRIN-GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372
            GY  NG   E     + M +   +  N VTL  +L AC  +G V  G      A     
Sbjct: 227 AGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYAL---K 283

Query: 373 GMLKPEHY---ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
           GM +  H      +VD+ ++ G    A +    LP    +  W A+LGG  +H     G+
Sbjct: 284 GMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYLP-KRNVVAWNAMLGGLAMHGR---GK 339

Query: 430 FA----ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK-EKGMT 475
           F      + I    P+D++   +LS A S +G  D   +  R ++ E G T
Sbjct: 340 FVLDIFPKMIEEAKPDDLTFMAVLS-ACSHSGLVDQGYHYFRSLESEYGTT 389


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/434 (36%), Positives = 244/434 (56%), Gaps = 31/434 (7%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF  +    V S   +IG  A+     +A+ L+ +M    + P  FT GS++ +S  L+
Sbjct: 292 RVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLK 351

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L  GK++H +  + GL+ + F+G ++L LYI                           C
Sbjct: 352 SLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIH--------------------------C 385

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     R      LF  M  ++ VSWNAMI GYSQ G  E+A+ LF +++ +G  P+   
Sbjct: 386 GESSSARL-----LFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIA 440

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A +  +AL +GK  H  A+K L   DVFV  S I  YAK G +++S  VFD L 
Sbjct: 441 VVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK 500

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +++ +WNA+I  Y  +G GEE+IE FERMR  G  P+G T +G+L  C+H GLVE+G  
Sbjct: 501 NKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLK 560

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF++ +       K EHYAC++D+L R+GR  +A   ++++P  P    W +LL  C+  
Sbjct: 561 YFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNF 620

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
             +E+G+  A ++L L+P++V +YV LSN  + +G+WD+V  +R+ +K+ G+ +  GCSW
Sbjct: 621 GELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSW 680

Query: 483 IEIKSKVHVFVTGD 496
           IE+  KVH FV GD
Sbjct: 681 IELGGKVHSFVAGD 694



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 208/431 (48%), Gaps = 51/431 (11%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           ++ +L +C   + +    ++H LA    +          E   +    V   S+    + 
Sbjct: 137 LVTVLPVCAREVDVQMGIRIHGLAVKLGLS---------EDVRVNNSLVDMYSKCGYLTE 187

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSST 119
              +FD+    N VS  T+IG    + +  EA  LF  M +  +I  +E T  +++P+  
Sbjct: 188 AQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACL 247

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            +  L   K+LH ++ + G Q +  V +  +  Y K                        
Sbjct: 248 EISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAK------------------------ 283

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             CG+L       A ++F  M  + V SWNA+IGG +Q G   +A+NL+I+M   GLVP+
Sbjct: 284 --CGMLIC-----AERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPD 336

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T+   ++A+A++ +L  GK  H   ++   ++D F+G SL+S Y  CG    + L+FD
Sbjct: 337 WFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFD 396

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + E++ V+WNA+I GY+QNG  E+A+  F ++  +G +P+ + ++ +L AC+    +  
Sbjct: 397 GMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRL 456

Query: 360 G---YSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           G   + Y  +A L     ++    AC  +D+ ++SG  KE++  ++D   +  +  W A+
Sbjct: 457 GKETHCYALKALL-----MEDVFVACSTIDMYAKSGCIKESRS-VFDGLKNKDLASWNAI 510

Query: 416 LGGCQIHSNVE 426
           +    +H + E
Sbjct: 511 IAAYGVHGDGE 521



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 158/343 (46%), Gaps = 53/343 (15%)

Query: 89  YEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147
           Y +AI +F +++         FTF  VI + T   D  LG+ +H    K+GL  +VFVG+
Sbjct: 11  YSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGN 70

Query: 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS 207
           A++ +Y K   ++ A +VF                                 MP RN+VS
Sbjct: 71  ALIAMYGKFGFVDAAVKVF-------------------------------HYMPVRNLVS 99

Query: 208 WNAMIGGYSQTGRNEEAVNLFIEML--REGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
           WN++I G+S+ G +++  ++ +EM+   EGL+P+ +TL   +   A    + MG   H  
Sbjct: 100 WNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGL 159

Query: 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325
           AVK     DV V NSL+  Y+KCG + ++ ++FDK   +N V+WN +I G    G   EA
Sbjct: 160 AVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEA 219

Query: 326 IEFFERMRIN-GIRPNGVTLLGLLWACNHTGLVEK-----GYSY---FSQAKLEDPGMLK 376
              F  M++   I  N VT+L +L AC     +       GYS    F   +L   G   
Sbjct: 220 FNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANG--- 276

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
                  V   ++ G    A+   Y +     +  W AL+GGC
Sbjct: 277 ------FVAAYAKCGMLICAERVFYSME-TKTVNSWNALIGGC 312



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 32/293 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL--LNIRPSEFTFGSVIPSSTA 120
           +VF  +P  N+VS  +II  F++    ++   +   M+     + P   T  +V+P    
Sbjct: 87  KVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAR 146

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
             D+ +G ++H  A K+GL  +V V ++++D+Y K   + EA  +F+  +  N VS+ TM
Sbjct: 147 EVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTM 206

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I GL  +    +A  LF+EM                               ++E +  N 
Sbjct: 207 IGGLCTKGYIFEAFNLFREMQ------------------------------MQEDIEVNE 236

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A   I+ L   K  H  +++   + D  V N  ++ YAKCG +  +  VF  
Sbjct: 237 VTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYS 296

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  + + +WNA+I G AQNG   +A+  + +M  +G+ P+  T+  LL A  H
Sbjct: 297 METKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 10/206 (4%)

Query: 220 RNE---EAVNLFIEMLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275
           RNE   +A+++F++++ +     ++ T PC I A       G+G+  H   +K    LDV
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
           FVGN+LI+ Y K G ++ ++ VF  +  RN+V+WN++I G+++NG  ++  +    M   
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 336 --GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSGR 392
             G+ P+  TL+ +L  C     V+ G      A KL     ++  +   +VD+ S+ G 
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNN--SLVDMYSKCGY 184

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGG 418
             EA + L+D         W  ++GG
Sbjct: 185 LTEA-QMLFDKNNRKNAVSWNTMIGG 209



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 139/328 (42%), Gaps = 71/328 (21%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           + CG  S    S   +FD + + + VS   +I  +++    E+A+ LF +++    +PS+
Sbjct: 383 IHCGESS----SARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSD 438

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
               SV+ + +    L LGK+ H +A K  L  +VFV  + +D+Y K   I+E+  VF+ 
Sbjct: 439 IAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDG 498

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
             N ++ S                               WNA+I  Y   G  EE++ LF
Sbjct: 499 LKNKDLAS-------------------------------WNAIIAAYGVHGDGEESIELF 527

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMG-------KSFH---------ACAVKFLGK 272
             M + G +P+  T    +   ++   +  G       ++FH         AC +  LG+
Sbjct: 528 ERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGR 587

Query: 273 L-----------------DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAV 312
                             D  V +SL+SF    G +E   +V +KL E   +N+  + ++
Sbjct: 588 AGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSL 647

Query: 313 ICGYAQNGRGEEAIEFFERMRINGIRPN 340
              YA +GR ++     + ++  G++ +
Sbjct: 648 SNLYAGSGRWDDVRRVRQMIKDIGLQKD 675


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/452 (35%), Positives = 245/452 (54%), Gaps = 39/452 (8%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            +FDE+P  N+ +    I    +     +AI  F   L ++  P+  TF + + +   + 
Sbjct: 164 NMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMV 223

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            LNLG+QLHA+  + G + +V V + ++D Y K   I  A  VF    N           
Sbjct: 224 RLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGN----------- 272

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                               +NVVSW +M+    Q    E A  +F++  +E + P    
Sbjct: 273 -------------------RKNVVSWCSMLAALVQNHEEERACMVFLQARKE-VEPTDFM 312

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A +  L +G+S HA AVK   + ++FVG++L+  Y KCGS+E++  VF +L 
Sbjct: 313 ISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELP 372

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRI--NGIRPNGVTLLGLLWACNHTGLVEKG 360
           ERN+VTWNA+I GYA  G  + A+  FE M +  +GIRP+ VTL+ +L  C+  G VE+G
Sbjct: 373 ERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERG 432

Query: 361 YSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
              F   +L    +PG    EH+AC+VDLL RSG    A EF+ ++   P I  W ALLG
Sbjct: 433 IQIFESMRLNYGIEPG---AEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLG 489

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H   ELG+ AA ++  LD  D  ++V+LSN L+ AG+W+  + +R+EMK+ G+ + 
Sbjct: 490 ACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKN 549

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            G SWI +K+++HVF   D +H  N EI A+L
Sbjct: 550 VGYSWIAVKNRIHVFQAKDSSHDRNSEIQAML 581



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 183/410 (44%), Gaps = 41/410 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           S+ D  +S   V        VV+ T++I        +  A+  F+ M   N++P++FTF 
Sbjct: 53  SKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFP 112

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V  +S  ++    GKQ+H  A K G+  +VFVG +  D+Y K          F      
Sbjct: 113 CVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTG--------FRG---- 160

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                              DA  +F EMP RN+ +WNA I    Q  R+ +A+  F E L
Sbjct: 161 -------------------DACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFL 201

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
                PN  T    + A  ++  L +G+  HA  V+   K DV V N LI FY KCG + 
Sbjct: 202 CVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIV 261

Query: 293 DSLLVFDKLTER-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            + +VF+++  R N+V+W +++    QN   E A   F + R   + P    +  +L AC
Sbjct: 262 SAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQAR-KEVEPTDFMISSVLSAC 320

Query: 352 NHTGLVEKGYSYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
              G +E G S  +   +A +ED   +     + +VD+  + G  + A++   +LP +  
Sbjct: 321 AELGGLELGRSVHALAVKACVEDNIFVG----SALVDMYGKCGSIENAEQVFSELP-ERN 375

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
           +  W A++GG     ++++       +         SYV L + LSV  +
Sbjct: 376 LVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSR 425



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 9/196 (4%)

Query: 60  SVHQVFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           S   VF+ + +  NVVS  +++    + H  E A  +F +     + P++F   SV+ + 
Sbjct: 262 SAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARK-EVEPTDFMISSVLSAC 320

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
             L  L LG+ +HA A K  ++ N+FVGSA++D+Y K  SIE A +VF +    N+V++ 
Sbjct: 321 AELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWN 380

Query: 179 TMICGLLKRERFEDALKLFQEMP------HRNVVSWNAMIGGYSQTGRNEEAVNLFIEM- 231
            MI G   +   + AL+LF+EM         + V+  +++   S+ G  E  + +F  M 
Sbjct: 381 AMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMR 440

Query: 232 LREGLVPNHSTLPCAI 247
           L  G+ P      C +
Sbjct: 441 LNYGIEPGAEHFACVV 456



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 258 MGKSFHACAVK-FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
           +G++ HA  ++  +  L  F+ N L++ Y+K   +  +  V      R +VTW ++I G 
Sbjct: 24  LGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGC 83

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTL 344
             N R   A+  F  MR + ++PN  T 
Sbjct: 84  VHNRRFLPALLHFTNMRRDNVQPNDFTF 111


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 259/468 (55%), Gaps = 36/468 (7%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           C    D   + H +F+++ + + VS + +IG F K   YE     F  ++    +P  F+
Sbjct: 45  CAKHKD-LVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFS 103

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              VI +      L +G+ +H+   K GL  + FV S ++D+Y K               
Sbjct: 104 LPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAK--------------- 148

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                      CG++     ++A +LF  MP +++V+   MI GY++ G+  E+  LF +
Sbjct: 149 -----------CGMI-----DNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQ 192

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFH--ACAVKFLGKLDVFVGNSLISFYAKC 288
           M R+G VP+   +   + A A + A+   +  H   CA ++   LDV +G ++I  YAKC
Sbjct: 193 MRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRY--SLDVELGTAMIDMYAKC 250

Query: 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           GS++ S  +FD++ ++N+++W+A+I  Y  +G+G EA+E F  M  +GI PN +T + LL
Sbjct: 251 GSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLL 310

Query: 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           +AC+H GLV+ G   FS   +        +HY CMVDLL R+GR  +A   + ++  +  
Sbjct: 311 YACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKD 370

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
            G W A LG C+IH  V+L E AA+ +L+L  ++   Y++LSN  + AG+W +V+ IR  
Sbjct: 371 EGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNL 430

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           M ++ + ++PG +WIE+ + ++ F  GD +H  ++EIY +L+S ++++
Sbjct: 431 MAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKL 478



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           D+ V N L+   AK   +  + L+F+K+ ER+ V+W+ +I G+ +NG  E   + F  + 
Sbjct: 34  DLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELI 93

Query: 334 INGIRPNGVTLLGLLWACNHT-GLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLSRS 390
             G +P+  +L  ++ AC  T GL+     + +  K      L  +++ C  +VD+ ++ 
Sbjct: 94  RAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLK----NGLHLDNFVCSTLVDMYAKC 149

Query: 391 GRFKEAKEFLYDLP 404
           G    AK+    +P
Sbjct: 150 GMIDNAKQLFDRMP 163



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 102/255 (40%), Gaps = 45/255 (17%)

Query: 1   MIQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           M+ ++  C    ++NK   +H    +Y+   + +   +L T  I      CGS      S
Sbjct: 205 MVTIVNACAKLGAMNKARLVH----DYVCARRYSLDVELGTAMIDM-YAKCGS----IDS 255

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             ++FD +   NV+S + +IG +       EA+ LF  ML   I P+  TF S++ + + 
Sbjct: 256 SREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACS- 314

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
                     HA     GLQ               L S+    R       P+V  YT M
Sbjct: 315 ----------HAGLVDDGLQ------------LFSLMSVSYGVR-------PDVKHYTCM 345

Query: 181 ICGLLKRERFEDALKLFQEMP-HRNVVSWNAMIGG---YSQTGRNEEAVNLFIEMLREGL 236
           +  L +  R + AL+L + M   ++   W A +G    + Q    E+A  L + +  +  
Sbjct: 346 VDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQN- 404

Query: 237 VPNHSTLPCAIIAAA 251
            P H  L   I A A
Sbjct: 405 -PGHYILLSNIYANA 418


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/452 (34%), Positives = 260/452 (57%), Gaps = 19/452 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NI 104
           T  ++  ++     +    FD++P+ +VVS   ++  +A+    EE I LF+ ML   N+
Sbjct: 204 TTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNV 263

Query: 105 RPSEFTFGSVIPSSTALEDLNLGKQL-HAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           +P E T+ +VI S ++L D  L + +       VG + N FV +A+LD++ K  ++E A 
Sbjct: 264 QPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAH 323

Query: 164 RVFEDT---HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
           ++FE        + V +  MI    +      A  LF +MP R+ VSWN+MI GY+Q G 
Sbjct: 324 KIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGE 383

Query: 221 NEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG----KLDV 275
           + +A+ LF EM+  E   P+  T+     A  ++  LG+G      AV  L     ++ +
Sbjct: 384 SVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGN----WAVSILKENHIQISI 439

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
            V NSLIS Y++CGSM+D++L+F ++  R++V++N +I G+A++G G E+IE   +M+ +
Sbjct: 440 SVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKED 499

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
           GI P+ +T + +L AC+H GL+ +G   F   K  D      +HYACM+D+L R+GR +E
Sbjct: 500 GIEPDRITYIAILTACSHAGLLGEGQRLFESIKFPDV-----DHYACMIDMLGRAGRLEE 554

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455
           A + +  +P +P  G + +LL    IH  VELGE AA ++  ++P +  +YV+LSN  + 
Sbjct: 555 AMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYAS 614

Query: 456 AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
           AG+W +   +R  M+++G+ +  G SW+E  S
Sbjct: 615 AGRWKDGDKVRDTMRKQGVKKTTGLSWLEHNS 646



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 169/377 (44%), Gaps = 79/377 (20%)

Query: 93  IYLFSRMLL-LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151
           + LF  ML   NI+P+  +F SV+  S   E +       A   K G   + +V + IL 
Sbjct: 88  VSLFKHMLRHCNIKPNT-SFYSVMMKSAGSESM----LFLAHVLKSGYDRDHYVRNGILG 142

Query: 152 LYIKLSSIEEATRVFEDTHNP-----------------------------------NVVS 176
           +Y K   IE A ++F++  +                                    NV++
Sbjct: 143 IYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVIT 202

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +TTMI G  K+   + A   F +MP R+VVSWNAM+ GY+Q G  EE + LF +ML  G 
Sbjct: 203 WTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGN 262

Query: 237 V-PNHSTLPCAIIAAANIAALGMGKS-----------------------FHA------CA 266
           V P+ +T    I + +++    + +S                        HA       A
Sbjct: 263 VQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAA 322

Query: 267 VKFLGKLDVF------VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
            K   +L V+        N++IS YA+ G +  +  +FDK+ +R+ V+WN++I GY QNG
Sbjct: 323 HKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNG 382

Query: 321 RGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
              +AI+ FE M      +P+ VT++ +  AC H G +  G    S  K E+   +    
Sbjct: 383 ESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILK-ENHIQISISV 441

Query: 380 YACMVDLLSRSGRFKEA 396
           Y  ++ + SR G  ++A
Sbjct: 442 YNSLISMYSRCGSMQDA 458



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTG-RNEEAVNLFIEMLRE-GLVPNHSTLPCAIIAAANI 253
           +F    H +V  +  M+  YSQ G R +  V+LF  MLR   + PN S     + +A + 
Sbjct: 58  IFHAATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAGSE 117

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
           + L     F A  +K     D +V N ++  YAK G +E +  +FD++ +R +  WN +I
Sbjct: 118 SML-----FLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMI 172

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            GY + G  EEA   F  M    I  N +T     W    TG  +KG
Sbjct: 173 SGYWKCGNEEEASTLFHVMGDQEISRNVIT-----WTTMITGHAKKG 214


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/461 (34%), Positives = 243/461 (52%), Gaps = 35/461 (7%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  ++FDE+ + N+ +   +I    +    ++A+ LF  M  L   P EFT GSV+    
Sbjct: 146 SAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCA 205

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
            L  L  G+++HA   K G + +  VGS++  +YIK  S+                    
Sbjct: 206 GLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLS------------------- 246

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                       D  KL + MP R VV+WN +I G +Q G  EE +N +  M   G  P+
Sbjct: 247 ------------DGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPD 294

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T    + A + +A LG G+  HA  +K      + V +SLIS Y++ G +EDS+  F 
Sbjct: 295 KITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFV 354

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
                ++V W+++I  Y  +GRGEEA+E F +M    +  N VT L LL+AC+H+GL EK
Sbjct: 355 DRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEK 414

Query: 360 GYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           G  YF    +     LKP  EHY C+VDLL R+GR +EA+  +  +P  P    WK LL 
Sbjct: 415 GTEYFDL--MVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLA 472

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C++H   E+ E  +  I+ LDP D +SYV+LSN  + A  W NVS IR+ M+++ + + 
Sbjct: 473 ACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKE 532

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           PG SW+E+K+ VH F  GD++H    EI   L+    ++++
Sbjct: 533 PGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQ 573



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 162/318 (50%), Gaps = 6/318 (1%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F  ++ S   L  L  GKQ+H+     G   + F+ + +L+ Y KL   + +  +F +  
Sbjct: 65  FSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMP 124

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             NV+S+  +I G L+    E A KLF EM  RN+ +WNAMI G +Q   N++A++LF E
Sbjct: 125 RRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKE 184

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M   G +P+  TL   +   A + +L  G+  HAC +K   +L   VG+SL   Y K GS
Sbjct: 185 MYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGS 244

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + D   +   +  R +V WN +I G AQNG  EE +  +  M++ G RP+ +T + +L A
Sbjct: 245 LSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSA 304

Query: 351 CNHTGLVEKGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSGRFKEA-KEFLYDLPFDPG 408
           C+    + +G    ++  K     +L     + ++ + SRSG  +++ K F+    FD  
Sbjct: 305 CSELATLGQGQQIHAEVIKAGASSVLAV--VSSLISMYSRSGCLEDSIKAFVDRENFD-- 360

Query: 409 IGFWKALLGGCQIHSNVE 426
           +  W +++     H   E
Sbjct: 361 VVLWSSMIAAYGFHGRGE 378



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 99/199 (49%), Gaps = 5/199 (2%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           +S   S   ++   +P   VV+  T+I   A+    EE +  ++ M +   RP + TF S
Sbjct: 241 KSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVS 300

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ + + L  L  G+Q+HA   K G  S + V S+++ +Y +   +E++ + F D  N +
Sbjct: 301 VLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFD 360

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
           VV +++MI       R E+AL+LF +M       N V++ +++   S +G  E+    F 
Sbjct: 361 VVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFD 420

Query: 230 EMLRE-GLVPNHSTLPCAI 247
            M+++  L P      C +
Sbjct: 421 LMVKKYKLKPRIEHYTCVV 439


>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
 gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
           DEFECTIVE 247; Flags: Precursor
 gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
           thaliana gb|AC007109.6, and contains two DUF17 PF|01535
           domains [Arabidopsis thaliana]
 gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
          Length = 500

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/454 (36%), Positives = 248/454 (54%), Gaps = 14/454 (3%)

Query: 73  VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF-------GSVIPSSTALEDLN 125
            VS T+ I    +     EA   FS M L  + P+  TF       G     S AL DL 
Sbjct: 36  TVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDL- 94

Query: 126 LGKQLHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
               LH +A K+GL  N V VG+AI+ +Y K    ++A  VF+   + N V++ TMI G 
Sbjct: 95  ----LHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGY 150

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           ++  + ++A K+F +MP R+++SW AMI G+ + G  EEA+  F EM   G+ P++  + 
Sbjct: 151 MRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAII 210

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
            A+ A  N+ AL  G   H   +    K +V V NSLI  Y +CG +E +  VF  + +R
Sbjct: 211 AALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKR 270

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
            +V+WN+VI G+A NG   E++ +F +M+  G +P+ VT  G L AC+H GLVE+G  YF
Sbjct: 271 TVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYF 330

Query: 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH-S 423
              K +     + EHY C+VDL SR+GR ++A + +  +P  P      +LL  C  H +
Sbjct: 331 QIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGN 390

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N+ L E   + +  L+ +  S+YV+LSN  +  GKW+  S +RR+MK  G+ + PG S I
Sbjct: 391 NIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSI 450

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           EI   +HVF+ GD  H     I  VL   +  +R
Sbjct: 451 EIDDCMHVFMAGDNAHVETTYIREVLELISSDLR 484



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 119/265 (44%), Gaps = 40/265 (15%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
            S +  +  ++FD++P+ +++S T +I  F K+ + EEA+  F  M +  ++P      +
Sbjct: 152 RSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIA 211

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
            + + T L  L+ G  +H +      ++NV V ++++DLY +   +E A +VF +     
Sbjct: 212 ALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRT 271

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VVS+ ++I                                G++  G   E++  F +M  
Sbjct: 272 VVSWNSVIV-------------------------------GFAANGNAHESLVYFRKMQE 300

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFH---ACAVKFLGKLDVFVGNSLISFYAKCGS 290
           +G  P+  T   A+ A +++  +  G  +     C  +   +++ +    L+  Y++ G 
Sbjct: 301 KGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHY--GCLVDLYSRAGR 358

Query: 291 MEDSLLVFDKLTERNIVTWNAVICG 315
           +ED+L    KL +   +  N V+ G
Sbjct: 359 LEDAL----KLVQSMPMKPNEVVIG 379



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 12/181 (6%)

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH----- 353
           ++ T    V+W + I    +NGR  EA + F  M + G+ PN +T + LL  C       
Sbjct: 29  NQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGS 88

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
             L +  + Y  +  L+   ++       ++ + S+ GRFK+A+  ++D   D     W 
Sbjct: 89  EALGDLLHGYACKLGLDRNHVMVG---TAIIGMYSKRGRFKKAR-LVFDYMEDKNSVTWN 144

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
            ++ G      V   + AA+    +   D+ S+  + N     G  +      REM+  G
Sbjct: 145 TMIDGYMRSGQV---DNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISG 201

Query: 474 M 474
           +
Sbjct: 202 V 202


>gi|225443851|ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial [Vitis vinifera]
          Length = 533

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 249/436 (57%), Gaps = 13/436 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FDE+    + +   +I  + K    EE + L SR+     +P  FTF  ++ ++    
Sbjct: 98  QLFDEMHQPTLSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCAS 157

Query: 123 ------DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
                   +LGK +HA   +  ++S+  + +A++D Y+K   +  A RVF+   + NV+ 
Sbjct: 158 GGIFPLTYSLGKVVHAQILRSNVESDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLC 217

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRN-EEAVNLFIEMLREG 235
            T+MI G + +   EDA  +F+    ++VV +NAMI GYS++      ++ ++I+M R  
Sbjct: 218 STSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGYSKSVETARRSLEVYIDMQRLN 277

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
             P  ST    I A + +    +G+   +  VK     D+ +G++LI  Y+KCG +ED+ 
Sbjct: 278 FRPTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDAR 337

Query: 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTLLGLLWACNHT 354
            VFD + E+N+ +W ++I GY +NG   EA+E F RM+I   ++PN VT L  L AC H 
Sbjct: 338 RVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVKPNYVTFLSALSACGHA 397

Query: 355 GLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFW 412
           GLV KG++      +E   +LKP  EHYACMVDLL R+G  ++A EF+  +P  PG   W
Sbjct: 398 GLVAKGWTILES--MERDYLLKPRMEHYACMVDLLGRAGSLQQAWEFVMRMPEKPGSDVW 455

Query: 413 KALLGGCQIHSNVELGEFAARRILALDPED-VSSYVMLSNALSVAGKWDNVSNIRREMKE 471
            ALL  CQ+H +VE+   AA  I  L+ +    +YV LSNAL+ AGKWD+VS +R+ MK 
Sbjct: 456 AALLSSCQLHGDVEMASMAAHEIFKLNSDGRPGAYVALSNALAAAGKWDSVSEVRQLMKV 515

Query: 472 KGMTRVPGCSWIEIKS 487
           +G+++  GCSW+   S
Sbjct: 516 RGVSKDTGCSWVGTDS 531



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 32/176 (18%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR------------------ 98
           K     +VFD + D NV+ +T++I  +  Q   E+A  +F R                  
Sbjct: 199 KVGYARRVFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGYSK 258

Query: 99  --------------MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF 144
                         M  LN RP+  TF SVI + + L    +G+Q+ +   K+   +++ 
Sbjct: 259 SVETARRSLEVYIDMQRLNFRPTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIK 318

Query: 145 VGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           +GSA++D+Y K   IE+A RVF+     NV S+T+MI G  K     +AL+LF  M
Sbjct: 319 MGSALIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRM 374



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/377 (22%), Positives = 157/377 (41%), Gaps = 88/377 (23%)

Query: 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           G+++H+   K+G + N  V   +L L++K   +  A ++F++ H P              
Sbjct: 61  GQKIHSHILKIGFEPNTNVSIKLLILHLKSRCLRYARQLFDEMHQPT------------- 107

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                             + ++N MI GY + G+ EE +NL   +      P+  T    
Sbjct: 108 ------------------LSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTF-SM 148

Query: 247 IIAAANIAALG-------MGKSFHACAVK---------FLGKLDVFVGN----------- 279
           I+ A   A+ G       +GK  HA  ++         +   +D +V N           
Sbjct: 149 ILKATGCASGGIFPLTYSLGKVVHAQILRSNVESDDVLYTALVDSYVKNGKVGYARRVFD 208

Query: 280 -----------SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN-GRGEEAIE 327
                      S+IS Y   GS+ED+  +F +  E+++V +NA+I GY+++      ++E
Sbjct: 209 MMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVEKDVVVFNAMIEGYSKSVETARRSLE 268

Query: 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY------A 381
            +  M+    RP   T   ++ AC+   + E G    SQ       ++K   Y      +
Sbjct: 269 VYIDMQRLNFRPTMSTFASVIGACSVLTVFEIGQQVQSQ-------LVKMNFYNDIKMGS 321

Query: 382 CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV-ELGEFAARRILALDP 440
            ++D+ S+ GR ++A+     +P +  +  W +++ G   + N  E  E  +R  + ++ 
Sbjct: 322 ALIDMYSKCGRIEDARRVFDHMP-EKNVFSWTSMIDGYGKNGNSNEALELFSR--MQIEC 378

Query: 441 EDVSSYVMLSNALSVAG 457
               +YV   +ALS  G
Sbjct: 379 HVKPNYVTFLSALSACG 395



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 105/242 (43%), Gaps = 22/242 (9%)

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           P   +L  A+    N      G+  H+  +K   + +  V   L+  + K   +  +  +
Sbjct: 40  PTAISLSVALQHYINSDFPSHGQKIHSHILKIGFEPNTNVSIKLLILHLKSRCLRYARQL 99

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA--CNHTG 355
           FD++ +  +  +N +I GY ++G+ EE +    R+  +  +P+G T   +L A  C   G
Sbjct: 100 FDEMHQPTLSAYNYMISGYLKHGQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGG 159

Query: 356 LVEKGYSY-------FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
           +    YS          ++ +E   +L    Y  +VD   ++G+   A+  ++D+  D  
Sbjct: 160 IFPLTYSLGKVVHAQILRSNVESDDVL----YTALVDSYVKNGKVGYARR-VFDMMLDKN 214

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           +    +++ G     +VE  E   +R +  D       V++ NA+ + G   +V   RR 
Sbjct: 215 VLCSTSMISGYMSQGSVEDAEDIFKRTVEKD-------VVVFNAM-IEGYSKSVETARRS 266

Query: 469 MK 470
           ++
Sbjct: 267 LE 268



 Score = 42.0 bits (97), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTF 111
           S+  +     +VFD +P+ NV S T++I  + K  +  EA+ LFSRM +  +++P+  TF
Sbjct: 328 SKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVKPNYVTF 387

Query: 112 GSVI 115
            S +
Sbjct: 388 LSAL 391


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/447 (36%), Positives = 242/447 (54%), Gaps = 40/447 (8%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           +P  + VS T +I  +    H  EAI +  R     +RP  FT   V+ +   + DL  G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 128 KQLHAWATKV-GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186
           + + A A +  G+  +VFV +A LDLY+K   +E+A  VF+                   
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFD------------------- 101

Query: 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCA 246
                       EM +R+ V+W AM+GGY+  G   EA++LF  M  EG  P+  T+  A
Sbjct: 102 ------------EMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGA 149

Query: 247 IIAAANIAALGMGKSFHACAVKFLGKLDVF----VGNSLISFYAKCGSMEDSLLVFDKLT 302
           + A   + AL +G+     AV  +   +V     +G +LI  YAKCGS  ++ +VF ++ 
Sbjct: 150 LSACTRLGALDLGRQ----AVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQML 205

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
           ER+I+ WNA+I G    G  + A     +M+ +G++ N  T +GLL +C HTGLV  G  
Sbjct: 206 ERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQ 265

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF           + EHY CMVDL SR+G  +EA + + D+P       W ALLGGC+IH
Sbjct: 266 YFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIH 325

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            N +L E A ++++ L+P +  +YVMLSN  S +G+W++ + +R EMK KG+ +VP  SW
Sbjct: 326 RNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSW 385

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +E+  KVH F  GD +H ++D+IYA L
Sbjct: 386 VELDGKVHKFYVGDDSHPLSDKIYAKL 412



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 113/269 (42%), Gaps = 37/269 (13%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG    +      VFDE+ + + V+   ++G +A   H  EA+ LF  M +   +P  
Sbjct: 88  VKCG----EMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDC 143

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           +T    + + T L  L+LG+Q         +  N  +G+A++D+Y K  S  EA  VF  
Sbjct: 144 YTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVF-- 201

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                        Q+M  R+++ WNAMI G   TG  + A  L 
Sbjct: 202 -----------------------------QQMLERDIIVWNAMILGLGMTGHEKIAFALV 232

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKS-FHACAVKFLGKLDVFVGNSLISFYAK 287
            +M + G+  N +T    + +  +   +  G+  FH     +     +     ++  +++
Sbjct: 233 GQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSR 292

Query: 288 CGSMEDS-LLVFDKLTERNIVTWNAVICG 315
            G +E++  L+ D     N V W A++ G
Sbjct: 293 AGLLEEAHQLIGDMPMLANAVVWGALLGG 321


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/504 (31%), Positives = 264/504 (52%), Gaps = 42/504 (8%)

Query: 12  LSLNKLSKL-HSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD 70
           ++L   S+L H L     +  +   +     P + T  +S  ++        +VFDE+P 
Sbjct: 530 IALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPH 589

Query: 71  LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            + V  T +I  +       EA+++        +RP  FT   V+ +   + DL  G+ +
Sbjct: 590 PSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETV 649

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
              A + G+  +VFV +A +DLY+K                          CG + + R 
Sbjct: 650 WRAAEQEGVAQSVFVATAAVDLYVK--------------------------CGEMAKAR- 682

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
               ++F +M H++ V+W AM+GGY+  G   EA++LF+ M  EG+ P+   +  A+ A 
Sbjct: 683 ----EVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSAC 738

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFV-----GNSLISFYAKCGSMEDSLLVFDKLTERN 305
             + AL +G+     A++ +   D F+     G +LI  YAKCGS  ++ +VF ++ +++
Sbjct: 739 TRLGALDLGRQ----AIRMV-DWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKD 793

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           I+ WNA+I G    G  + A     +M  +G++ N  T +GLL +C HTGL++ G  YF 
Sbjct: 794 IIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 853

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
                     + EHY CMVDLLSR+G  +EA + + D+P         ALLGGC+IH N 
Sbjct: 854 NMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNT 913

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           EL E   ++++ L+P +  +YVMLSN  S  G+W++ + +R +MK KG+ +VP CSW+E 
Sbjct: 914 ELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEF 973

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVL 509
           + KVH F  GD++H ++D+IY  L
Sbjct: 974 EGKVHEFRVGDKSHPLSDQIYKKL 997


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 261/457 (57%), Gaps = 9/457 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD +P+ +VV+ T +IG + +     EA  LF  M   N+     ++ ++I      +
Sbjct: 243 RLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNV----VSWTTMITGYVQNQ 298

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +++ ++L     +V  + N    +A+L  Y     ++EA+ +F      +VV+   MI 
Sbjct: 299 QVDIARKLF----EVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMIL 354

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
              +      A ++F +M  ++  +W+AMI  Y + G   +A+ LF  M REG+ PN  +
Sbjct: 355 CFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPS 414

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   +   A +A L  G+  HA  V+    LDV+V + L+S Y KCG++  +  VFD+  
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFA 474

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +++V WN++I GYAQ+G G EA+  F  M  +GI P+ VT +G+L AC++TG V+KG  
Sbjct: 475 VKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLE 534

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            F+  + +     K EHYACMVDLL R+G+  EA + +  +P +     W ALLG C+ H
Sbjct: 535 IFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTH 594

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
             ++L E AA+++L L+P++   +++LSN  +  G+WD+V+ +RR M+++ +++ PGCSW
Sbjct: 595 MKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSW 654

Query: 483 IEIKSKVHVFVTGDRNHH-MNDEIYAVLRSCTEQIRE 518
           I ++ KVH F  GD + H  + EI  +L   +  +RE
Sbjct: 655 IVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLRE 691



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 192/424 (45%), Gaps = 46/424 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFDE+ D N++S  +I+  + +    +EA  +F +M   N      ++  ++        
Sbjct: 120 VFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT----ISWNGLVSGYINNGM 175

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +N  +++         + NV   +A++  Y+K   I EA  +F      NVVS+T M+ G
Sbjct: 176 INEAREVFDRMP----ERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGG 231

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE--------- 234
           LL+  R ++A +LF  MP ++VV+   MIGGY Q GR  EA  LF EM R          
Sbjct: 232 LLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMI 291

Query: 235 -GLVPNHST-----LPCAIIAAANIAALGMGKSFHACAVKFLGKLD-------------V 275
            G V N        L   +     ++   M K +  C     G+LD             V
Sbjct: 292 TGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNC-----GRLDEASELFNAMPIKSV 346

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
              N++I  + + G +  +  VFD++ E++  TW+A+I  Y + G   +A+E F  M+  
Sbjct: 347 VACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE 406

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
           GIRPN  +L+ +L  C     ++ G    +Q  +     L     + ++ +  + G   +
Sbjct: 407 GIRPNFPSLISVLSVCAGLANLDHGREIHAQL-VRSQFDLDVYVASVLLSMYIKCGNLAK 465

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHS-NVE-LGEFAARRILALDPEDVSSYVMLSNAL 453
           AK+ ++D      +  W +++ G   H   VE L  F       + P+DV ++V + +A 
Sbjct: 466 AKQ-VFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDV-TFVGVLSAC 523

Query: 454 SVAG 457
           S  G
Sbjct: 524 SYTG 527



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 54/293 (18%)

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           ++S  ++I    +  + E A  +F EM  +N++SWN+++ GY Q  R +EA N+F +M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-- 155

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
                                                 + +    N L+S Y   G + +
Sbjct: 156 -------------------------------------SERNTISWNGLVSGYINNGMINE 178

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VFD++ ERN+V+W A++ GY + G   EA   F +M    +    V L GLL     
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL----Q 234

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            G +++    F     +D           M+    + GR  EA+    ++P    +  W 
Sbjct: 235 EGRIDEACRLFDMMPEKDVVT-----RTNMIGGYCQVGRLVEARMLFDEMP-RRNVVSWT 288

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNI 465
            ++ G   +  V++    AR++  + PE +  S+  +    +  G+ D  S +
Sbjct: 289 TMITGYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASEL 337



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 121/267 (45%), Gaps = 33/267 (12%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           + C  ++ +     QVFD++ + +  + + +I  + ++    +A+ LF  M    IRP+ 
Sbjct: 353 ILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNF 412

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            +  SV+     L +L+ G+++HA   +     +V+V S +L +YIK  ++ +A +VF+ 
Sbjct: 413 PSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDR 472

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               +VV + ++I                                GY+Q G   EA+ +F
Sbjct: 473 FAVKDVVMWNSIIT-------------------------------GYAQHGLGVEALRVF 501

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSLISFYAK 287
            +M   G++P+  T    + A +    +  G + F++   K+  +  +     ++    +
Sbjct: 502 HDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGR 561

Query: 288 CGSMEDSLLVFDKL-TERNIVTWNAVI 313
            G + +++ + +K+  E + + W A++
Sbjct: 562 AGKLNEAMDLIEKMPMEADAIIWGALL 588


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/382 (37%), Positives = 233/382 (60%), Gaps = 8/382 (2%)

Query: 131 HAWATKVGLQSNVFVGSAILDLYIK--LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           H  A K G+ S+ +V + IL  Y K  +  +  A ++F++  + + V+  TMI       
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY---- 56

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
            FE A K+F+ MP +++V+WN++I G++  G+  EA+ L+  M  EG+ P+  T+   + 
Sbjct: 57  -FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLS 115

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL-TERNIV 307
           A A +A L +G+  H   VK     ++   N+L+  YAKCG++ ++  +FD++  ERN+V
Sbjct: 116 ACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVV 175

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           +W ++I G A NG G+EA+E F+ M   G+ P+ +T +G+L+AC+H G+V +G+ YF + 
Sbjct: 176 SWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRM 235

Query: 368 KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427
           K +   + + EHY CMVDLL R+G  KEA +++ D+P  P    W+ LLG C IH ++ L
Sbjct: 236 KEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGL 295

Query: 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487
           G FA  R+L L+P+D   YV+LSN  +   +W +V  +RR M  +G+ + PG S +E+ +
Sbjct: 296 GAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGN 355

Query: 488 KVHVFVTGDRNHHMNDEIYAVL 509
            VH FV GDR H  ++ IY +L
Sbjct: 356 HVHEFVMGDRTHPQSEAIYKML 377



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 180/431 (41%), Gaps = 100/431 (23%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F S ++VF+ +P+ ++V+  ++I  FA      EA+ L+ RM    + P  FT  S++ +
Sbjct: 57  FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSA 116

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH-NPNVVS 176
              L  L LG++ H +  KVGL  N+   +A+LDLY K  +I EA ++F++     NVVS
Sbjct: 117 CAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVS 176

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           +T++I GL                               +  G  +EA+  F +M REGL
Sbjct: 177 WTSLIVGL-------------------------------AVNGFGKEALEHFKDMEREGL 205

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
           VP+  T                                 FVG  ++   + CG + +   
Sbjct: 206 VPSEIT---------------------------------FVG--VLYACSHCGIVNEGFE 230

Query: 297 VFDKLTER-----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351
            F ++ E+      I  +  ++    + G  +EA ++ + M    ++PN V    LL AC
Sbjct: 231 YFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDM---PLQPNAVIWRTLLGAC 287

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD----- 406
              G +  G   F++A+L          Y  + +L +   R+ +  E    +  +     
Sbjct: 288 TIHGHL--GLGAFARARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKT 345

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILA--LDPEDVSSYVML---SNALSVAGKWDN 461
           PG             +S VELG      ++     P+  + Y ML   +  L +AG   +
Sbjct: 346 PG-------------YSLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPH 392

Query: 462 VSNIRREMKEK 472
            +N+  +++E+
Sbjct: 393 TANVLADIEEE 403


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/521 (31%), Positives = 280/521 (53%), Gaps = 19/521 (3%)

Query: 2   IQLLCICRSSLSLNKLS---KLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKF 58
           + ++C+  +   L  L    K+++   N  IE     V  L    ++ +++         
Sbjct: 237 VTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAK----- 291

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
               ++FDE    N+     +   + +Q    EA+ +F+ M+   +RP   +  S I S 
Sbjct: 292 ----RLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 347

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           + L ++  GK  H +  + G +S   + +A++D+Y+K    + A R+F+   N  VV++ 
Sbjct: 348 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 407

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLV 237
           +++ G ++    + A + F+ MP +N+VSWN +I G  Q    EEA+ +F  M  +EG+ 
Sbjct: 408 SIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVN 467

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            +  T+     A  ++ AL + K  +    K   +LDV +G +L+  +++CG  E ++ +
Sbjct: 468 ADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSI 527

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ LT R++  W A I   A  G  E AIE F+ M   G++P+GV  +G L AC+H GLV
Sbjct: 528 FNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLV 587

Query: 358 EKGYS-YFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           ++G   ++S  KL     + PE  HY CMVDLL R+G  +EA + + D+P +P    W +
Sbjct: 588 QQGKEIFYSMLKLHG---VSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 644

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LL  C++  NVE+  +AA +I  L PE   SYV+LSN  + AG+W++++ +R  MKEKG+
Sbjct: 645 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 704

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
            + PG S I+I+ K H F +GD +H     I A+L   +++
Sbjct: 705 RKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQR 745



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 173/375 (46%), Gaps = 71/375 (18%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTF 111
           +E  +  S  +VFDE+ + NVVS T++I  +A++   ++A+ LF RM+    + P+  T 
Sbjct: 180 AECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTM 239

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
             VI +   LEDL  G++++A+    G++ N  + SA++D+Y+K ++I+ A R       
Sbjct: 240 VCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKR------- 292

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                                   LF E    N+   NAM   Y + G   EA+ +F  M
Sbjct: 293 ------------------------LFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           +  G+ P+  ++  AI + + +  +  GKS H   ++   +    + N+LI  Y KC   
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQ 388

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRG----------------------------- 322
           + +  +FD+++ + +VTWN+++ GY +NG                               
Sbjct: 389 DTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGS 448

Query: 323 --EEAIEFFERMRIN-GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLK 376
             EEAIE F  M+   G+  +GVT++ +  AC H G ++     Y Y  +  ++    L 
Sbjct: 449 LFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQ----LD 504

Query: 377 PEHYACMVDLLSRSG 391
                 +VD+ SR G
Sbjct: 505 VRLGTTLVDMFSRCG 519



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 182 CGLLKRERFEDALKLFQEM-PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           C L  RE    A ++F+    +     +N++I GY+ +G   EA+ LF+ M+  G+ P+ 
Sbjct: 75  CELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDK 134

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T P  + A A   A G G   H   VK     D+FV NSL+ FYA+CG ++ +  VFD+
Sbjct: 135 YTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDE 194

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ERN+V+W ++ICGYA+    ++A++ F RM R   + PN VT++ ++ AC     +E 
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 360 G---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           G   Y++   + +E   ++     + +VD+  +      AK  L+D
Sbjct: 255 GEKVYAFIRNSGIEVNDLM----VSALVDMYMKCNAIDVAKR-LFD 295



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 132/277 (47%), Gaps = 32/277 (11%)

Query: 78  TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV 137
           ++I  +A      EAI LF RM+   I P ++TF   + +         G Q+H    K+
Sbjct: 104 SLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKM 163

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           G   ++FV ++++  Y +   ++ A +VF++    NVVS+T+MICG  +R+  +D     
Sbjct: 164 GYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKD----- 218

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAANIAAL 256
                                     AV+LF  M+R E + PN  T+ C I A A +  L
Sbjct: 219 --------------------------AVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
             G+  +A       +++  + ++L+  Y KC +++ +  +FD+    N+   NA+   Y
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
            + G   EA+  F  M  +G+RP+ +++L  + +C+ 
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349


>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g08510-like [Glycine max]
          Length = 474

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 250/433 (57%), Gaps = 2/433 (0%)

Query: 87  HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG 146
            H      L+S++ L    P++ TF  +  + T+L   +LG+ LH    K G + ++F  
Sbjct: 26  QHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQMLHTHFIKSGFEPDLFAA 85

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           +A+LD+Y K+ ++E A ++F++     V  +  M+ GL +    + AL+LF  MP RNVV
Sbjct: 86  TALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVV 145

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
            W  MI GYS   + ++A+ LF+ M +E G++PN  TL   + A AN+ AL +G+   A 
Sbjct: 146 PWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIGQRVEAY 205

Query: 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEE 324
           A K     + +  N+++  Y KCG ++ +  VF+++   RN+ +WN+++ G A +G   +
Sbjct: 206 ARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCK 265

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384
           A+E +++M   G  P+ VT +GLL AC   G+V+KG   F         + K EHY CMV
Sbjct: 266 ALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCMV 325

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444
           DLL R+G+ +EA E +  +   P    W ALLG C  H NVEL E AA  +  L+P +  
Sbjct: 326 DLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHGNVELAEIAAESLFVLEPWNPG 385

Query: 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDE 504
           +YV+LSN  + AG+WD V+ +R+ MK   +T+  G S+IE  +++H F+  DR+H  ++E
Sbjct: 386 NYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGAQLHKFIVKDRSHPKSNE 445

Query: 505 IYAVLRSCTEQIR 517
           I+A+L    E ++
Sbjct: 446 IFALLDGVYEMVK 458



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 78/140 (55%), Gaps = 2/140 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-LLLNIRPSEFTFGSVIPSSTAL 121
           ++F  +P  NVV  TT+I  ++    Y++A+ LF  M     I P+  T  S++P+   L
Sbjct: 134 ELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANL 193

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNVVSYTTM 180
             L +G+++ A+A K G   N +  +A+L++Y+K   I+ A RVF +  +  N+ S+ +M
Sbjct: 194 XALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSM 253

Query: 181 ICGLLKRERFEDALKLFQEM 200
           + GL        AL+L+ +M
Sbjct: 254 VVGLAVHGECCKALELYDQM 273


>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
 gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
          Length = 752

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/420 (37%), Positives = 242/420 (57%), Gaps = 5/420 (1%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E        +V D +P+ N VS +T+I R  ++    EA+ L+S+ML    RP+   F 
Sbjct: 329 AELGDLEGARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFS 388

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           SV+ +   L DL  G ++HA A K+G  S++FV S+++D+Y K     +A R+F      
Sbjct: 389 SVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEK 448

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           N V + ++I G     +  +A +LF++MP RN  SWN MI GY++  R  +A+N F  ML
Sbjct: 449 NTVCWNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAML 508

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             G +P   TL   ++A AN+ +L MGK  HA  VK   + ++F+G +L   YAK G ++
Sbjct: 509 ASGQIPGEITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLD 568

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
            S  +F ++ E+N +TW A++ G A+NG  EE+I  FE M  N I PN  T L +L+AC+
Sbjct: 569 SSRRMFYQMPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACS 628

Query: 353 HTGLVEKGYSYFS--QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GLVE+   YF   QA    P   K +HY CMVD+L+R+GR  EA+E L  +P      
Sbjct: 629 HCGLVEQAIHYFETMQAHGIPP---KDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTS 685

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W +LL  C  + N E+GE AA+++  L+ ++ + YV+LSN  +  GKW + +  R  M+
Sbjct: 686 SWSSLLSACNTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQ 745



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 183/391 (46%), Gaps = 40/391 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++++  P  +V   T +I  F +   +++A  +F +ML  ++RP+  T   VI +     
Sbjct: 206 KLYERCPLYSVAFFTAMIAGFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAG 265

Query: 123 DLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           + +L   +   A K  L + ++ V ++++ LY+++     A RVF+D    +VVS+T ++
Sbjct: 266 EFDLAMGVVGLAIKWNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALL 325

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               +    E A ++   MP RN VSW+ +I  + Q G + EA+ L+ +ML EG  PN S
Sbjct: 326 DVYAELGDLEGARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNIS 385

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKF-------------------------------L 270
                + A A +  L  G   HA A+K                                L
Sbjct: 386 CFSSVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSL 445

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
            + +    NSLIS Y+  G M ++  +F K+  RN  +WN +I GYA+N R  +A+ +F 
Sbjct: 446 PEKNTVCWNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFC 505

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLL 387
            M  +G  P  +TL  +L AC +   +E G   ++   +  +ED   +       + D+ 
Sbjct: 506 AMLASGQIPGEITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMG----TALSDMY 561

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           ++SG    ++   Y +P    I  W A++ G
Sbjct: 562 AKSGDLDSSRRMFYQMPEKNNIT-WTAMVQG 591



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 34/298 (11%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           ++K   I  A R+F+     +VVSYTTM+  L+KR   +DA+KL++  P  +V  + AMI
Sbjct: 164 HVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMI 223

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LG 271
            G+ +   +++A  +F +MLR  + PN  TL C I A        +       A+K+ L 
Sbjct: 224 AGFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAIKWNLF 283

Query: 272 KLDVFVGNSLISF-------------------------------YAKCGSMEDSLLVFDK 300
           +  + V NSLI+                                YA+ G +E +  V D 
Sbjct: 284 EKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYAELGDLEGARRVLDA 343

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN V+W+ +I  + Q G   EA++ + +M   G RPN      +L AC     +  G
Sbjct: 344 MPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSACATLHDLRGG 403

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
               + A L+          + ++D+  +  +  +A+     LP +     W +L+ G
Sbjct: 404 TRIHANA-LKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLP-EKNTVCWNSLISG 459



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 7/239 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S + K     ++F ++P  N  S  T+I  +A+   + +A+  F  ML     P E
Sbjct: 457 ISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQIPGE 516

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  SV+ +   L  L +GK +HA   K+G++ N+F+G+A+ D+Y K   ++ + R+F  
Sbjct: 517 ITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRMFYQ 576

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEA 224
               N +++T M+ GL +    E+++ LF+ M    +     ++ A++   S  G  E+A
Sbjct: 577 MPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLVEQA 636

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           ++ F  M   G+ P      C +   A    L   +      +K   KLD    +SL+S
Sbjct: 637 IHYFETMQAHGIPPKDKHYTCMVDVLARAGRLPEAEEL---LMKVPSKLDTSSWSSLLS 692



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 7/164 (4%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
            +++    K GS++D++ ++++    ++  + A+I G+ +N   ++A   F +M    +R
Sbjct: 189 TTMVDALMKRGSVKDAVKLYERCPLYSVAFFTAMIAGFVRNELHKDAFPVFRKMLRCSVR 248

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           PN VTL+ ++ AC   G  +        A   +      E +  ++ L  R G    A  
Sbjct: 249 PNVVTLICVIKACVGAGEFDLAMGVVGLAIKWNLFEKSIEVHNSLITLYLRMGDAAAAHR 308

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEF-AARRILALDPE 441
              D+     +  W ALL    +++  ELG+   ARR+L   PE
Sbjct: 309 VFDDMEVRDVVS-WTALL---DVYA--ELGDLEGARRVLDAMPE 346


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 170/517 (32%), Positives = 276/517 (53%), Gaps = 43/517 (8%)

Query: 5   LCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQV 64
           L I ++  +L KL++LH+    ++I   K   Q    P + T   S  S  D       +
Sbjct: 11  LDILQACNTLPKLAQLHT----HII---KLGFQN--NPLVLTKFTSASSNLDAIPYAMSL 61

Query: 65  FDEVPDLNVVSA---TTIIGRFAKQHHYEE-AIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
              V D  V  A   +TII  +A+    +  AI+ ++ ML   I P+++ F  V+ +   
Sbjct: 62  VFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAG 121

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L DLNLGK +H    K G   ++FV + ++ +Y   S   E  R                
Sbjct: 122 LRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFAR---------------- 165

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                         KLF EMP  + V+W AMIGGY++ G++  AV LF +M   G+ P+ 
Sbjct: 166 --------------KLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDD 211

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A  ++ AL +GK   +   K      V + N+L+  +AKCG ++ +L +F  
Sbjct: 212 VTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRN 271

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +++R IV+W +VI G A +GRG EA+  FE M+ +G+ P  +  +GLL AC+H+GLVE+G
Sbjct: 272 MSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERG 331

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             YFS+   +   + K EHY CMVDLLSR+G   EA EF+  +P +P    W+ L+  C+
Sbjct: 332 RQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACR 391

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H  ++LGE  +++++  +P   S+YV+LSN       W+  S IR  M +KG+ +VPG 
Sbjct: 392 VHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGS 451

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           + IE+ +++H F+ GDR+H+  +EI  ++     +++
Sbjct: 452 TMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMK 488


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/521 (31%), Positives = 280/521 (53%), Gaps = 19/521 (3%)

Query: 2   IQLLCICRSSLSLNKLS---KLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKF 58
           + ++C+  +   L  L    K+++   N  IE     V  L    ++ +++         
Sbjct: 237 VTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAK----- 291

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
               ++FDE    N+     +   + +Q    EA+ +F+ M+   +RP   +  S I S 
Sbjct: 292 ----RLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 347

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           + L ++  GK  H +  + G +S   + +A++D+Y+K    + A R+F+   N  VV++ 
Sbjct: 348 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 407

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLV 237
           +++ G ++    + A + F+ MP +N+VSWN +I G  Q    EEA+ +F  M  +EG+ 
Sbjct: 408 SIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVN 467

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            +  T+     A  ++ AL + K  +    K   +LDV +G +L+  +++CG  E ++ +
Sbjct: 468 ADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSI 527

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ LT R++  W A I   A  G  E AIE F+ M   G++P+GV  +G L AC+H GLV
Sbjct: 528 FNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLV 587

Query: 358 EKGYS-YFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
           ++G   ++S  KL     + PE  HY CMVDLL R+G  +EA + + D+P +P    W +
Sbjct: 588 QQGKEIFYSMLKLHG---VSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNS 644

Query: 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
           LL  C++  NVE+  +AA +I  L PE   SYV+LSN  + AG+W++++ +R  MKEKG+
Sbjct: 645 LLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGL 704

Query: 475 TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
            + PG S I+I+ K H F +GD +H     I A+L   +++
Sbjct: 705 RKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQR 745



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 173/375 (46%), Gaps = 71/375 (18%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTF 111
           +E  +  S  +VFDE+ + NVVS T++I  +A++   ++A+ LF RM+    + P+  T 
Sbjct: 180 AECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTM 239

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
             VI +   LEDL  G++++A+    G++ N  + SA++D+Y+K ++I+ A R       
Sbjct: 240 VCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKR------- 292

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
                                   LF E    N+   NAM   Y + G   EA+ +F  M
Sbjct: 293 ------------------------LFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLM 328

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291
           +  G+ P+  ++  AI + + +  +  GKS H   ++   +    + N+LI  Y KC   
Sbjct: 329 MDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQ 388

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRG----------------------------- 322
           + +  +FD+++ + +VTWN+++ GY +NG                               
Sbjct: 389 DTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGS 448

Query: 323 --EEAIEFFERMRIN-GIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLK 376
             EEAIE F  M+   G+  +GVT++ +  AC H G ++     Y Y  +  ++    L 
Sbjct: 449 LFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQ----LD 504

Query: 377 PEHYACMVDLLSRSG 391
                 +VD+ SR G
Sbjct: 505 VRLGTTLVDMFSRCG 519



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 5/194 (2%)

Query: 182 CGLLKRERFEDALKLFQEM-PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           C L  RE    A ++F+    +     +N++I GY+ +G   EA+ LF+ M+  G+ P+ 
Sbjct: 75  CELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDK 134

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T P  + A A   A G G   H   VK     D+FV NSL+ FYA+CG ++ +  VFD+
Sbjct: 135 YTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDE 194

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ERN+V+W ++ICGYA+    ++A++ F RM R   + PN VT++ ++ AC     +E 
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 360 G---YSYFSQAKLE 370
           G   Y++   + +E
Sbjct: 255 GEKVYAFIRNSGIE 268



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 132/277 (47%), Gaps = 32/277 (11%)

Query: 78  TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV 137
           ++I  +A      EAI LF RM+   I P ++TF   + +         G Q+H    K+
Sbjct: 104 SLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKM 163

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           G   ++FV ++++  Y +   ++ A +VF++    NVVS+T+MICG  +R+  +D     
Sbjct: 164 GYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKD----- 218

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTLPCAIIAAANIAAL 256
                                     AV+LF  M+R E + PN  T+ C I A A +  L
Sbjct: 219 --------------------------AVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
             G+  +A       +++  + ++L+  Y KC +++ +  +FD+    N+   NA+   Y
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
            + G   EA+  F  M  +G+RP+ +++L  + +C+ 
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQ 349


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/472 (32%), Positives = 260/472 (55%), Gaps = 19/472 (4%)

Query: 58  FSSVHQVFDEV---PDL----NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           +S  + +F  +   PD+    N++ A +     +   H + +I+L++ + L  +RP  ++
Sbjct: 26  YSYAYSLFTSITHAPDIYLYNNIIKALS-----SSPTHPKASIFLYNNIQLAGLRPDSYS 80

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS--IEEATRVFE- 167
           F   + + T    +  G+QLH+ + + GL S++ V +A + +Y    S  I +A ++F+ 
Sbjct: 81  FPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDG 140

Query: 168 -DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                 +V  +  M+ G  K     +A  LF+ MP RNV+SW A+I GY+Q  R  +A+ 
Sbjct: 141 MSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIA 200

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL--DVFVGNSLISF 284
           LF  M  E + P+   +  A+ A A + AL +G+      +  LG L  ++ + N+LI  
Sbjct: 201 LFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHY-IDRLGLLTTNIPLNNALIDM 259

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           YAK G ++ +L VF+ +  + I+TW  +I G A +G G EA+E F RM    ++PN +T 
Sbjct: 260 YAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITF 319

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           + +L AC+H GLV+ G  YF++         K EHY CM+DLL R+G  KEA+  L  +P
Sbjct: 320 IAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMP 379

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464
           F+P    W +LL  C  H + ELGE A + +L L+P++  +Y +LSN  +  G+W+    
Sbjct: 380 FEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRV 439

Query: 465 IRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           +R+ M + G+ ++PG S IE+ ++VH F+ G+ +H   D I  VL     Q+
Sbjct: 440 VRKVMWDAGVKKMPGGSLIEVNNRVHEFIAGEISHSQFDRIQEVLSKINRQL 491



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++S    S  QVF+ +    +++ TT+I   A      EA+ +FSRM    ++P++ TF 
Sbjct: 261 AKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFI 320

Query: 113 SVIPSSTALEDLNLGK-QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA-TRVFEDTH 170
           +++ + + +  +  G+   +   ++ G++  +     ++DL  +   ++EA T + +   
Sbjct: 321 AILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPF 380

Query: 171 NPNVVSYTTMICGLLKR---ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
            PN V + +++         E  E AL+   E+   N  ++  +   Y+  GR  E+
Sbjct: 381 EPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNES 437


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/448 (33%), Positives = 248/448 (55%), Gaps = 32/448 (7%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VF  +   + VS  ++I  + +   ++EA+ LF +M+  +++P   T+  ++  ST L
Sbjct: 371 QEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQL 429

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            DL+LGK+LH    K+G  SN+ V + ++D+Y K                          
Sbjct: 430 GDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAK-------------------------- 463

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG        D+LK+F+ M  R++++WN +I     +      + +   M  EG+ P+ +
Sbjct: 464 CG-----EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMA 518

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   +   + +AA   GK  H C  K   + DV VGN LI  Y+KCGS+ +S  VF  +
Sbjct: 519 TMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLM 578

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             +++VTW A+I      G G++A+  F  M   GI P+ V  + +++AC+H+GLVE+G 
Sbjct: 579 KTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGL 638

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           +YF + K +     + EHYAC+VDLLSRS    +A++F+  +P  P    W ALL  C++
Sbjct: 639 NYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRM 698

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
             + E+ E  + RI+ L+P+D   YV++SN  +  GKWD V +IR+ +K +G+ + PGCS
Sbjct: 699 SGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCS 758

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           W+EI++KV+VF TG +     +E+  +L
Sbjct: 759 WMEIQNKVYVFGTGTKFFEQFEEVNKLL 786



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 147/292 (50%), Gaps = 32/292 (10%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           P  NV    +II        + EA+ L+S    + ++P  +TF SVI +   L D  + K
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
            +H     +G  S++++G+A++D+Y + + +++A +VFE                     
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFE--------------------- 174

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     EMP R+VVSWN++I GY+  G   EA+ ++      G+VP+  T+   + 
Sbjct: 175 ----------EMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLR 224

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A   + ++  G   H    K   K DV V N L+S Y K   + D   +FDK+  R+ V+
Sbjct: 225 ACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVS 284

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           WN +ICGY+Q G  EE+I+ F  M +N  +P+ +T+  +L AC H G +E G
Sbjct: 285 WNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFG 335



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 160/366 (43%), Gaps = 70/366 (19%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           +      +VF+E+P  +VVS  ++I  +    ++ EA+ ++ R   L + P  +T  SV+
Sbjct: 164 NDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVL 223

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI---------------- 159
            +   L  +  G  +H    K+G++ +V V + +L +Y K + +                
Sbjct: 224 RACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAV 283

Query: 160 ---------------EEATRVFEDTHN---PNVVSYTTMI--CGLLKRERFEDAL----- 194
                          EE+ ++F +  N   P++++ T+++  CG L    F   +     
Sbjct: 284 SWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMI 343

Query: 195 ----------------------------KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                                       ++F  M  ++ VSWN+MI  Y Q G  +EA+ 
Sbjct: 344 TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMK 403

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF +M++  + P+  T    +  +  +  L +GK  H    K     ++ V N+L+  YA
Sbjct: 404 LF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYA 462

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCG M DSL VF+ +  R+I+TWN +I     +      +    RMR  G+ P+  T+L 
Sbjct: 463 KCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLS 522

Query: 347 LLWACN 352
           +L  C+
Sbjct: 523 ILPVCS 528


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/457 (33%), Positives = 261/457 (57%), Gaps = 9/457 (1%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD +P+ +VV+ T +IG + +     EA  LF  M   N+     ++ ++I      +
Sbjct: 243 RLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNV----VSWTTMITGYVQNQ 298

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +++ ++L     +V  + N    +A+L  Y     ++EA+ +F      +VV+   MI 
Sbjct: 299 QVDIARKLF----EVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMIL 354

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
              +      A ++F +M  ++  +W+AMI  Y + G   +A+ LF  M REG+ PN  +
Sbjct: 355 CFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPS 414

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L   +   A +A L  G+  HA  V+    LDV+V + L+S Y KCG++  +  VFD+  
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFA 474

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +++V WN++I GYAQ+G G EA+  F  M  +GI P+ VT +G+L AC++TG V+KG  
Sbjct: 475 VKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLE 534

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            F+  + +     K EHYACMVDLL R+G+  EA + +  +P +     W ALLG C+ H
Sbjct: 535 IFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTH 594

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
             ++L E AA+++L L+P++   +++LSN  +  G+WD+V+ +RR M+++ +++ PGCSW
Sbjct: 595 MKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSW 654

Query: 483 IEIKSKVHVFVTGDRNHH-MNDEIYAVLRSCTEQIRE 518
           I ++ KVH F  GD + H  + EI  +L   +  +RE
Sbjct: 655 IVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLRE 691



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 192/424 (45%), Gaps = 46/424 (10%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFDE+ D N++S  +I+  + +    +EA  +F +M   N      ++  ++        
Sbjct: 120 VFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNT----ISWNGLVSGYINNGM 175

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +N  +++         + NV   +A++  Y+K   I EA  +F      NVVS+T M+ G
Sbjct: 176 INEAREVFDRMP----ERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGG 231

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE--------- 234
           LL+  R ++A +LF  MP ++VV+   MIGGY Q GR  EA  LF EM R          
Sbjct: 232 LLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMI 291

Query: 235 -GLVPNHST-----LPCAIIAAANIAALGMGKSFHACAVKFLGKLD-------------V 275
            G V N        L   +     ++   M K +  C     G+LD             V
Sbjct: 292 TGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNC-----GRLDEASELFNAMPIKSV 346

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
              N++I  + + G +  +  VFD++ E++  TW+A+I  Y + G   +A+E F  M+  
Sbjct: 347 VACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQRE 406

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
           GIRPN  +L+ +L  C     ++ G    +Q  +     L     + ++ +  + G   +
Sbjct: 407 GIRPNFPSLISVLSVCAGLANLDHGREIHAQL-VRSQFDLDVYVASVLLSMYIKCGNLAK 465

Query: 396 AKEFLYDLPFDPGIGFWKALLGGCQIHS-NVE-LGEFAARRILALDPEDVSSYVMLSNAL 453
           AK+ ++D      +  W +++ G   H   VE L  F       + P+DV ++V + +A 
Sbjct: 466 AKQ-VFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDV-TFVGVLSAC 523

Query: 454 SVAG 457
           S  G
Sbjct: 524 SYTG 527



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 121/293 (41%), Gaps = 54/293 (18%)

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           ++S  ++I    +  + E A  +F EM  +N++SWN+++ GY Q  R +EA N+F +M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-- 155

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
                                                 + +    N L+S Y   G + +
Sbjct: 156 -------------------------------------SERNTISWNGLVSGYINNGMINE 178

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VFD++ ERN+V+W A++ GY + G   EA   F +M    +    V L GLL     
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL----Q 234

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
            G +++    F     +D           M+    + GR  EA+    ++P    +  W 
Sbjct: 235 EGRIDEACRLFDMMPEKDVVT-----RTNMIGGYCQVGRLVEARMLFDEMP-RRNVVSWT 288

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNI 465
            ++ G   +  V++    AR++  + PE +  S+  +    +  G+ D  S +
Sbjct: 289 TMITGYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASEL 337



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 121/267 (45%), Gaps = 33/267 (12%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           + C  ++ +     QVFD++ + +  + + +I  + ++    +A+ LF  M    IRP+ 
Sbjct: 353 ILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNF 412

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            +  SV+     L +L+ G+++HA   +     +V+V S +L +YIK  ++ +A +VF+ 
Sbjct: 413 PSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDR 472

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               +VV + ++I                                GY+Q G   EA+ +F
Sbjct: 473 FAVKDVVMWNSIIT-------------------------------GYAQHGLGVEALRVF 501

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSLISFYAK 287
            +M   G++P+  T    + A +    +  G + F++   K+  +  +     ++    +
Sbjct: 502 HDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGR 561

Query: 288 CGSMEDSLLVFDKL-TERNIVTWNAVI 313
            G + +++ + +K+  E + + W A++
Sbjct: 562 AGKLNEAMDLIEKMPMEADAIIWGALL 588


>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 497

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/461 (37%), Positives = 255/461 (55%), Gaps = 36/461 (7%)

Query: 69  PDLN-VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI------PSSTAL 121
           P+ N  VS T+ I    K +++ +A   F +ML   + P+  T  +++      PS T++
Sbjct: 47  PNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSI 106

Query: 122 EDLNLGKQLHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
                G  LH  A K G   N V VG+A++D+Y K   ++ A  VF+     N+VS+ TM
Sbjct: 107 ---TFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTM 163

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G +K    +DALKLF ++P +NVVSW  +IGG+ +    EEA+  F EM   G+VP+ 
Sbjct: 164 IDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDF 223

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   I A AN+ ALG+G   H   +K   + +V V NSLI  YA+CG +E +  VFD 
Sbjct: 224 VTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDG 283

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +++RN+V+WN++I G+A NG  ++A+ FF                     C+H GL+++G
Sbjct: 284 MSQRNLVSWNSIIVGFAVNGLADKALSFF--------------------PCSHAGLIDEG 323

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              F+  K +     + EHY C+VDL SR+GR KEA + +  +P  P      +LL  C+
Sbjct: 324 LKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACR 383

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
              +VEL E   +  + L P   S+YV+ SN  +  GKWD  S +RREMKE+G+ +    
Sbjct: 384 TQGDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAF 443

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521
           S IEI S +H FV+GD+ H  ND IY+ L     ++  FEL
Sbjct: 444 SSIEIDSGIHKFVSGDKYHEENDYIYSAL-----ELLSFEL 479



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 23/201 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FD++P  NVVS T +IG F K+  YEEA+  F  M L  + P   T  ++I +   L 
Sbjct: 178 KLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLG 237

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LG  +H    K   + NV V ++++D+Y +   IE A +VF+     N+VS+ ++I 
Sbjct: 238 ALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIV 297

Query: 183 GLL------KRERF---------EDALKLFQEMP--HRN---VVSWNAMIGGYSQTGRNE 222
           G        K   F         ++ LK+F ++   HRN   +  +  ++  YS+ GR +
Sbjct: 298 GFAVNGLADKALSFFPCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLK 357

Query: 223 EAVNLFIEMLREGLVPNHSTL 243
           EA ++  +M    ++PN   L
Sbjct: 358 EAWDVIKKM---PMMPNEVVL 375


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/391 (38%), Positives = 224/391 (57%), Gaps = 6/391 (1%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +HA A + G   +  V S  + +Y     +  A   F +  +P+VV  T M+  L     
Sbjct: 224 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGE 283

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            + A +LF  MP R+ V+WNAMI GY  TGR+ EA+ LF EM   G      TL  A+ A
Sbjct: 284 ADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTA 343

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A + AL  GK  H+CA     +L V +G +LI  Y+KCG++  ++ VFD + ERN+ TW
Sbjct: 344 CAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTW 403

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
            + + G A NG G + +  F+RM   G+ PNGVT + +L  C+  GLV++G + F   K 
Sbjct: 404 TSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKS 463

Query: 370 E---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
               DP +   EHY CMVDL  R+GR  +A  F+  +P +P  G W ALL   +IH NVE
Sbjct: 464 NHGIDPWL---EHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVE 520

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           LG++A  +++A++ ++ +++V+LSN  + +  W  VSN+R  MK KG+ +VPGCS IE+ 
Sbjct: 521 LGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVG 580

Query: 487 SKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            KVH F  G + H  + EI  +L    +++R
Sbjct: 581 GKVHEFFVGGKTHPRHKEIEMMLAEMNQRLR 611



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 7/188 (3%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           +++ G E+D   +  ++FD +P  + V+   +I  +       EA+ LF  M        
Sbjct: 277 ALATGGEAD---AARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVG 333

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           E T  S + +   L  L  GK +H+ A   G++ +V +G+A++D+Y K  ++  A  VF+
Sbjct: 334 EVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFD 393

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEE 223
                NV ++T+ + GL       D L LF+ M    V    V++  ++ G S  G  +E
Sbjct: 394 SMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDE 453

Query: 224 AVNLFIEM 231
               F  M
Sbjct: 454 GRACFDSM 461


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/457 (33%), Positives = 260/457 (56%), Gaps = 10/457 (2%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           ++ + +   ++FDE+PD +VV+ T ++  + +     EA  LF  M   N+     ++ +
Sbjct: 155 DAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNV----VSWTA 210

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           +I       ++NL ++L     +V  + N    +A+L  YI+   +E+A  +F       
Sbjct: 211 MISGYAQNGEVNLARKLF----EVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHP 266

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           V +   M+ G  +R   + A  +F++M  R+  +W+AMI  Y Q     EA++ F EML 
Sbjct: 267 VAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLW 326

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G+ PN+ ++   +   A +A L  G+  HA  ++    +DVF  ++LI+ Y KCG+++ 
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  VF     ++IV WN++I GYAQ+G GE+A+  F  MR+ G+ P+G+T +G L AC++
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413
           TG V++G   F+   +        EHY+CMVDLL RSG  +EA + + ++P +P    W 
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506

Query: 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           AL+G C++H N E+ E AA+++L L+P +   YV+LS+  +  G+W++ S +R+ +  + 
Sbjct: 507 ALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRN 566

Query: 474 MTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           + + PGCSWIE   +VH+F +GD   H   E  A+LR
Sbjct: 567 LNKSPGCSWIEYDKRVHLFTSGDVLAH--PEHAAILR 601



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 193/424 (45%), Gaps = 44/424 (10%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F+ +P     S   ++  + +    + A+ LF RM   ++     ++ ++I S  +L   
Sbjct: 40  FEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA----SYNALI-SGLSLRRQ 94

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
            L     A A+ +    +V   +++L  Y++   + +A R+F+     N VSYT ++ GL
Sbjct: 95  TLPDAAAALAS-IPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGL 153

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           L   R  +A +LF EMP R+VV+W AM+ GY Q GR  EA  LF EM +  +V    +  
Sbjct: 154 LDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV----SWT 209

Query: 245 CAIIAAANIAALGMGK------------SFHACAVKFL--GKLD-------------VFV 277
             I   A    + + +            S+ A  V ++  G ++             V  
Sbjct: 210 AMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAA 269

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
            N+++  + + G ++ +  VF+K+ ER+  TW+A+I  Y QN    EA+  F  M   G+
Sbjct: 270 CNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGV 329

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
           RPN  +++ +L  C    +++ G    + A L     +     + ++ +  + G   +AK
Sbjct: 330 RPNYPSVISILTVCAALAVLDYGREVHA-AMLRCSFDMDVFAVSALITMYIKCGNLDKAK 388

Query: 398 EFLYDLPFDP-GIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALS 454
              +   F+P  I  W +++ G   H   E  LG F   R+  + P+ + +Y+    A S
Sbjct: 389 RVFHT--FEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGI-TYIGALTACS 445

Query: 455 VAGK 458
             GK
Sbjct: 446 YTGK 449



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 90/241 (37%), Gaps = 60/241 (24%)

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM--------- 231
           I  L +    E A   F+ MP R   S+NA++ GY +    + A+ LF  M         
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 232 -LREGLVPNHSTLPCAIIAAANIAALGMGKSF---------------------------H 263
            L  GL     TLP A  A A+I       SF                           H
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 264 ACAVKFLGKL-------------------DVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
                 LG L                   DV    +++S Y + G + ++  +FD++ +R
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR 203

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364
           N+V+W A+I GYAQNG    A + FE M       N V+   +L      G VE     F
Sbjct: 204 NVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELF 259

Query: 365 S 365
           +
Sbjct: 260 N 260


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 256/479 (53%), Gaps = 38/479 (7%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTA 120
             +FD +P+ NV++ T +I  + K   +E+   LF RM    ++R +  T   +  +   
Sbjct: 228 RSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRD 287

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
                 G Q+H   +++ L+ ++F+G++++ +Y KL  + EA  VF      + VS+ ++
Sbjct: 288 FFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSL 347

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS------------------------ 216
           I GL++RE+  +A +LF++MP +++VSW  MI G+S                        
Sbjct: 348 ITGLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDDITWT 407

Query: 217 -------QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
                    G  EEA+  F +MLR+ + PN  T    + A A++A L  G   H   VK 
Sbjct: 408 AMISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKM 467

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
               D+ V NSL+S Y KCG+  D+  +F  ++E NIV++N +I G++ NG G+EA++ F
Sbjct: 468 NMANDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLF 527

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDL 386
             +   G  PNGVT L LL AC H G V+ G+ YF   K     +PG   P+HYACMVDL
Sbjct: 528 SMLESTGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPG---PDHYACMVDL 584

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446
             RSG   EA   +  +P +P  G W +LL   + H  V+L E AA++++ L+P+  + Y
Sbjct: 585 FGRSGLLDEAYNLISTMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPY 644

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           V+LS   S+ GK  +   I    K K + + PG SWI +K +VH F+ GD +H   +EI
Sbjct: 645 VVLSQLYSMVGKNSDCDRIMNIKKSKRIKKDPGSSWIILKGQVHNFLAGDESHLNLEEI 703



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 156/319 (48%), Gaps = 10/319 (3%)

Query: 18  SKLHSLAPNYLIETQKASVQKLETPAIRT--DSVSCGSESDKFSSVHQVFDEVPDLNVVS 75
           S++  LA N  ++  +A  +++   +I +    +S  +E+ K S   QVFDE+P     S
Sbjct: 55  SQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATTS 114

Query: 76  ATTIIGRFAKQH-HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWA 134
              +I    K      +A  LF  +   N      ++ ++I         +  + L+A  
Sbjct: 115 YNAMITAMIKNKCDLGKAYELFCDIPEKN----AVSYATMITGFVRAGRFDEAECLYA-E 169

Query: 135 TKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDAL 194
           T V  +  V   + +L  Y+++    EA RVFE      VVSY++M+ G  K  R  DA 
Sbjct: 170 TPVKFRDPV-ASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDAR 228

Query: 195 KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP-NHSTLPCAIIAAANI 253
            LF  MP RNV++W AMI GY + G  E+   LF+ M +EG V  N +TL     A  + 
Sbjct: 229 SLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDF 288

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
                G   H    +   + D+F+GNSLIS Y+K G M ++  VF  +  ++ V+WN++I
Sbjct: 289 FRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLI 348

Query: 314 CGYAQNGRGEEAIEFFERM 332
            G  Q  +  EA E FE+M
Sbjct: 349 TGLVQREQISEAYELFEKM 367



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 135/295 (45%), Gaps = 26/295 (8%)

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE-RFEDALKLFQEMPHRNV 205
           +A++  Y +   + +A +VF++       SY  MI  ++K +     A +LF ++P +N 
Sbjct: 85  NAMISAYAENGKMSKAWQVFDEMPVRATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNA 144

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEM---LREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           VS+  MI G+ + GR +EA  L+ E     R+ +  N        +   N A     + F
Sbjct: 145 VSYATMITGFVRAGRFDEAECLYAETPVKFRDPVASNVLLSGYLRVGKWNEAV----RVF 200

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
              AVK     +V   +S++  Y K G + D+  +FD++ ERN++TW A+I GY + G  
Sbjct: 201 EGMAVK-----EVVSYSSMVDGYCKMGRILDARSLFDRMPERNVITWTAMIDGYFKAGFF 255

Query: 323 EEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPE 378
           E+    F RMR  G +R N  TL  +  AC       +G   +   S+  LE    L   
Sbjct: 256 EDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFFRYREGSQIHGLLSRMPLEFDLFLGNS 315

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC----QIHSNVELGE 429
               ++ + S+ G   EAK     + +   +  W +L+ G     QI    EL E
Sbjct: 316 ----LISMYSKLGYMGEAKAVFGVMKYKDSVS-WNSLITGLVQREQISEAYELFE 365



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 5/207 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           TD +   S   + S   ++F  +P+ + ++ T +I  F    +YEEA+  F +ML   + 
Sbjct: 376 TDMIKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQVC 435

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+ +TF SV+ ++ +L DL  G Q+H    K+ + +++ V ++++ +Y K  +  +A ++
Sbjct: 436 PNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYKI 495

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM----PHRNVVSWNAMIGGYSQTGRN 221
           F     PN+VSY TMI G       ++A+KLF  +       N V++ A++      G  
Sbjct: 496 FSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGYV 555

Query: 222 EEAVNLFIEM-LREGLVPNHSTLPCAI 247
           +     F  M    G+ P      C +
Sbjct: 556 DLGWKYFKSMKFSYGIEPGPDHYACMV 582



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 14/200 (7%)

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
           +F  NS IS  A+ G+++++  +F +++ R+IV+WNA+I  YA+NG+  +A + F+ M +
Sbjct: 50  IFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPV 109

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
                    +  ++      G   K Y  F     ++        YA M+    R+GRF 
Sbjct: 110 RATTSYNAMITAMIKNKCDLG---KAYELFCDIPEKN-----AVSYATMITGFVRAGRFD 161

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF--AARRILALDPEDVSSYVMLSNA 452
           EA+    + P    + F   +     +   + +G++  A R    +  ++V SY  + + 
Sbjct: 162 EAECLYAETP----VKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDG 217

Query: 453 LSVAGKWDNVSNIRREMKEK 472
               G+  +  ++   M E+
Sbjct: 218 YCKMGRILDARSLFDRMPER 237


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/391 (38%), Positives = 224/391 (57%), Gaps = 6/391 (1%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +HA A + G   +  V S  + +Y     +  A   F +  +P+VV  T M+  L     
Sbjct: 224 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGE 283

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            + A +LF  MP R+ V+WNAMI GY  TGR+ EA+ LF EM   G      TL  A+ A
Sbjct: 284 ADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTA 343

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A + AL  GK  H+CA     +L V +G +LI  Y+KCG++  ++ VFD + ERN+ TW
Sbjct: 344 CAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTW 403

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
            + + G A NG G + +  F+RM   G+ PNGVT + +L  C+  GLV++G + F   K 
Sbjct: 404 TSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKS 463

Query: 370 E---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
               DP +   EHY CMVDL  R+GR  +A  F+  +P +P  G W ALL   +IH NVE
Sbjct: 464 NHGIDPWL---EHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVE 520

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           LG++A  +++A++ ++ +++V+LSN  + +  W  VSN+R  MK KG+ +VPGCS IE+ 
Sbjct: 521 LGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVG 580

Query: 487 SKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            KVH F  G + H  + EI  +L    +++R
Sbjct: 581 GKVHEFFVGGKTHPRHKEIEMMLAEMNQRLR 611



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 7/188 (3%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           +++ G E+D   +  ++FD +P  + V+   +I  +       EA+ LF  M        
Sbjct: 277 ALATGGEAD---AARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVG 333

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           E T  S + +   L  L  GK +H+ A   G++ +V +G+A++D+Y K  ++  A  VF+
Sbjct: 334 EVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFD 393

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEE 223
                NV ++T+ + GL       D L LF+ M    V    V++  ++ G S  G  +E
Sbjct: 394 SMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDE 453

Query: 224 AVNLFIEM 231
               F  M
Sbjct: 454 GRACFDSM 461


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 162/450 (36%), Positives = 247/450 (54%), Gaps = 31/450 (6%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S  + F ++   ++VS   II   A      EAIY F +M+ + + P + TF +++ +  
Sbjct: 336 SAKRAFYQIESPDLVSWNAIIAALANSD-VNEAIYFFCQMIHMGLMPDDITFLNLLCACG 394

Query: 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
           +   LN G Q+H++  K+GL     V +++L +Y K S++ +A  VF+D           
Sbjct: 395 SPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISE-------- 446

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
                                 + N+VSWNA++   SQ  +  EA  LF  ML     P+
Sbjct: 447 ----------------------NGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPD 484

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           + T+   +   A + +L +G   H  +VK    +DV V N LI  YAKCG ++ +  VFD
Sbjct: 485 NITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFD 544

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
                +IV+W+++I GYAQ G G+EA+  F  MR  G++PN VT LG+L AC+H GLVE+
Sbjct: 545 STQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEE 604

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G+  ++  ++E       EH +CMVDLL+R+G   EA+ F+    FDP I  WK LL  C
Sbjct: 605 GWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLASC 664

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           + H NV++ E AA  IL LDP + ++ V+LSN  + AG W  V+ +R  MK+ G+ +VPG
Sbjct: 665 KTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASAGNWKEVARLRNLMKQMGVQKVPG 724

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            SWIE+K ++HVF + D +H     IY +L
Sbjct: 725 QSWIEVKDQIHVFFSEDSSHPQRGNIYTML 754



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 182/394 (46%), Gaps = 44/394 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTFGSVIPSSTALE 122
           VF  +   +++S  ++I  F +  +  EA+YLF  M    + +P+EF FGSV  +  +L 
Sbjct: 238 VFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLL 297

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               G+Q+     K GL  NVF G ++ D+Y K   +  A R F    +P++VS      
Sbjct: 298 KPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVS------ 351

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                    WNA+I   + +  N EA+  F +M+  GL+P+  T
Sbjct: 352 -------------------------WNAIIAALANSDVN-EAIYFFCQMIHMGLMPDDIT 385

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A  +   L  G   H+  +K        V NSL++ Y KC ++ D+  VF  ++
Sbjct: 386 FLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDIS 445

Query: 303 ER-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           E  N+V+WNA++   +Q+ +  EA   F+ M  +  +P+ +T+  +L  C     +E G 
Sbjct: 446 ENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVSLEVG- 504

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           +      ++   ++       ++D+ ++ G  K A+ +++D   +P I  W +L+ G   
Sbjct: 505 NQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHAR-YVFDSTQNPDIVSWSSLIVG--- 560

Query: 422 HSNVELGE-----FAARRILALDPEDVSSYVMLS 450
           ++   LG+     F   R L + P +V+   +LS
Sbjct: 561 YAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLS 594



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 166/377 (44%), Gaps = 42/377 (11%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLL---LNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
           +S  + I    KQ HY EA+  F+  L    + + PS  T+ ++I + T +  L  GK++
Sbjct: 45  LSTNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPS--TYVNLILACTNVRSLKYGKRI 102

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           H    K   Q ++ + + IL++Y K                          CG LK    
Sbjct: 103 HDHILKSNCQPDLVLQNHILNMYGK--------------------------CGSLK---- 132

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
            DA K F  M  R+VVSW  MI GYSQ G+  +A+ ++I+MLR G  P+  T    I A 
Sbjct: 133 -DARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKAC 191

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
                + +G   H   +K      +   N+LIS Y K G +  +  VF  ++ +++++W 
Sbjct: 192 CIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWA 251

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGI-RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
           ++I G+ Q G   EA+  F  M   G+ +PN      +  AC    L++  +    Q   
Sbjct: 252 SMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACR--SLLKPEFGRQIQGMC 309

Query: 370 EDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
              G+ +     C + D+ ++ G    AK   Y +   P +  W A++         E  
Sbjct: 310 AKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIE-SPDLVSWNAIIAALANSDVNEAI 368

Query: 429 EFAARRI-LALDPEDVS 444
            F  + I + L P+D++
Sbjct: 369 YFFCQMIHMGLMPDDIT 385



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 132/267 (49%), Gaps = 15/267 (5%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           + LLC C S ++LN+  ++HS    Y+I+     V  +   ++ T    C +  D F+  
Sbjct: 387 LNLLCACGSPMTLNQGMQIHS----YIIKMGLDKVAAV-CNSLLTMYTKCSNLHDAFN-- 439

Query: 62  HQVFDEVPDL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             VF ++ +  N+VS   I+   ++     EA  LF  ML    +P   T  +++ +   
Sbjct: 440 --VFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAE 497

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L  L +G Q+H ++ K GL  +V V + ++D+Y K   ++ A  VF+ T NP++VS++++
Sbjct: 498 LVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSL 557

Query: 181 ICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-G 235
           I G  +    ++AL LF+ M +  V    V++  ++   S  G  EE  +L+  M  E G
Sbjct: 558 IVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELG 617

Query: 236 LVPNHSTLPCAIIAAANIAALGMGKSF 262
           + P    + C +   A    L   ++F
Sbjct: 618 IPPTREHVSCMVDLLARAGCLYEAENF 644


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/469 (34%), Positives = 257/469 (54%), Gaps = 22/469 (4%)

Query: 56  DKFSSVHQVFDEVP----DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFT 110
           ++     +VFD VP     L + +A  ++  +A+    EEA+ LF+RM     + PSE T
Sbjct: 321 ERVGVARRVFDMVPGGHRQLGLWNA--MVCGYAQAGMDEEALELFARMEAEAGVVPSETT 378

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
              V+P+    E     + +H +  K G+  N FV +A++DLY +L  +E A  +F    
Sbjct: 379 IAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIE 438

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
             +VVS+ T+I G + +    DA +L +EM  +   +      G +  G +EE V     
Sbjct: 439 PRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIA--GTDEEPV----- 491

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
                 VPN+ TL   +   A +AA   GK  H  A++     D+ VG++L+  YAKCG 
Sbjct: 492 ------VPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGC 545

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLW 349
           +  S  VFD+L +RN++TWN +I  Y  +G G+EAI  F+RM + N  +PN VT +  L 
Sbjct: 546 LALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALA 605

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG 408
           AC+H+G+V++G   F   K        P+ +AC VD+L R+GR  EA   +  + P +  
Sbjct: 606 ACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQ 665

Query: 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468
           +  W + LG C++H NV LGE AA R+  L+P++ S YV+L N  S AG W+  S +R  
Sbjct: 666 VSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNR 725

Query: 469 MKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           M+++G+++ PGCSWIE+   +H F+ G+  H  +  ++A + +  E++R
Sbjct: 726 MRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMR 774



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 178/396 (44%), Gaps = 43/396 (10%)

Query: 41  TPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           TPA+    ++  +     ++   +F+ +P  + V+  ++I        +  A+     ML
Sbjct: 95  TPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDML 154

Query: 101 LLNIRPSEFTFGSVIPSSTAL-EDLNLGKQLHAWATKVGL--QSNVFVGSAILDLYIKLS 157
           L     S FT  SV+ + + L EDL LG++ HA+A K G       F  +A+L +Y +L 
Sbjct: 155 LEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLG 214

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
            +++A  +F                                + P   VV+WN M+    Q
Sbjct: 215 LVDDAQMLFGSVDT--------------------------TDSPGGGVVTWNTMVSLLVQ 248

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVF 276
           +GR  EA+ +  +M+  G+ P+  T   A+ A + +  L +G+  HA  +K      + F
Sbjct: 249 SGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSF 308

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
           V ++L+  YA    +  +  VFD +    R +  WNA++CGYAQ G  EEA+E F RM  
Sbjct: 309 VASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEA 368

Query: 335 N-GIRPNGVTLLGLLWACNHTGLV---EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
             G+ P+  T+ G+L AC  +      E  + Y  +  + D     P     ++DL +R 
Sbjct: 369 EAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMAD----NPFVQNALMDLYARL 424

Query: 391 GRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNV 425
           G  + A+     + P D  +  W  L+ GC +  ++
Sbjct: 425 GDMEAARWIFAAIEPRD--VVSWNTLITGCVVQGHI 458



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 142/314 (45%), Gaps = 49/314 (15%)

Query: 67  EVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNL 126
           + P   VV+  T++    +     EAI +   M+   +RP   TF S +P+ + LE L+L
Sbjct: 230 DSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSL 289

Query: 127 GKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL 185
           G+++HA+  K   L +N FV SA++D+Y     +  A RVF+            M+ G  
Sbjct: 290 GREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFD------------MVPGGH 337

Query: 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLP 244
           ++      L L+  M           + GY+Q G +EEA+ LF  M  E G+VP+ +T+ 
Sbjct: 338 RQ------LGLWNAM-----------VCGYAQAGMDEEALELFARMEAEAGVVPSETTIA 380

Query: 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER 304
             + A A        ++ H   +K     + FV N+L+  YA+ G ME +  +F  +  R
Sbjct: 381 GVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPR 440

Query: 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRING------------------IRPNGVTLLG 346
           ++V+WN +I G    G   +A +    M+  G                  + PN VTL+ 
Sbjct: 441 DVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMT 500

Query: 347 LLWACNHTGLVEKG 360
           LL  C       KG
Sbjct: 501 LLPGCAMLAAPAKG 514



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 40/205 (19%)

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLL 296
           +H  LP A  +AA + +L   +S H  A++   L      V N+L++ YA+CG +  +L 
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH--- 353
           +F+ +  R+ VT+N++I       R   A++    M + G   +  TL+ +L AC+H   
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAE 177

Query: 354 -----------------------------------TGLVEKGYSYFSQAKLEDPGMLKPE 378
                                               GLV+     F      D       
Sbjct: 178 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVV 237

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDL 403
            +  MV LL +SGR  EA E +YD+
Sbjct: 238 TWNTMVSLLVQSGRCGEAIEVIYDM 262


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/489 (33%), Positives = 267/489 (54%), Gaps = 17/489 (3%)

Query: 39  LETPAIRTDSVSC-----GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAI 93
           + TP   T + +C          + +    +FD +P  +VVS  T++         + A 
Sbjct: 41  VSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGAR 100

Query: 94  YLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLY 153
            LF+ M + ++  S  T  S +  S A+E+  +     A   +  +  N  V        
Sbjct: 101 RLFASMPVRDV-ASWNTMVSGLSKSGAVEEAKV--VFLAMPVRNSVSWNAMVSG--FACS 155

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
             +S+ EE  R        + V +T M+ G +       A+K F+ MP RN+VSWNA++ 
Sbjct: 156 GDMSTAEEWFR--NAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVA 213

Query: 214 GYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
           GY +    ++A+ LF  M+RE  V PN STL   ++  +N++ALG GK  H   +K L  
Sbjct: 214 GYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLS 273

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            ++ VG SL+S Y KCG +  + ++F ++  R++V WNA+I GYAQ+G G+EAI  FERM
Sbjct: 274 RNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERM 333

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRS 390
           +  G+ PN +T + +L AC HTGL + G   F    +++   ++P  +HY+CMVDLL R+
Sbjct: 334 KDEGVEPNWITFVVVLTACIHTGLCDFGIQCFE--GMQELYGIEPRVDHYSCMVDLLCRA 391

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450
           G+ + A +F+  +PF+P    +  LL  C+++ N+E  E AA +++  DP+   +YV L+
Sbjct: 392 GKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLA 451

Query: 451 NALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           N  +VA +WD+VS +RR MK+  + + PG SWIEIK  +H F + DR H     I+  L 
Sbjct: 452 NIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLG 511

Query: 511 SCTEQIREF 519
              E+++E 
Sbjct: 512 QLAERMKEM 520


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 243/454 (53%), Gaps = 50/454 (11%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M+  +IR    +   V  +    +    G+Q+H  A K           ++LDLY K  +
Sbjct: 328 MIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIK-----------SVLDLYGKCKA 376

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH---------------- 202
           + EA  +F+     + VS+  +I  L +   ++D +  F EM                  
Sbjct: 377 LMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKC 436

Query: 203 ---------------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247
                          + VVSWNA++ G+S    +E A   F EML  GL P+H T    +
Sbjct: 437 GIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVL 496

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
              AN+A + +GK  H   +K     D ++ ++L+  YAKCG M DSLLVF+K+ +R+ V
Sbjct: 497 DTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFV 556

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF--- 364
           +WNA+ICGYA +G G EA+  FERM+   + PN  T + +L AC+H GL + G  YF   
Sbjct: 557 SWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLM 616

Query: 365 -SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
            +  KLE P +   EH+ACMVD+L RS   +EA +F+  +PF      WK LL  C+I  
Sbjct: 617 TTHYKLE-PQL---EHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQ 672

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           +VE+ E AA  +L LDP+D S Y++LSN  + +GKW +VS  RR +K+  + + PGCSWI
Sbjct: 673 DVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWI 732

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           E +S++H F+ GD+ H  + E+Y +L     +++
Sbjct: 733 EAQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 766



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 133/270 (49%), Gaps = 7/270 (2%)

Query: 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLF 197
           G     FV + +L +Y + +    A RVF+     + VS+ TM+           A+ LF
Sbjct: 47  GFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
             MP  +VVSWNA++ GY Q G  +E+V+LF+EM R G+ P+ +T    + + + +  L 
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
           +G   HA AVK   ++DV  G++L+  Y KC S++D+L  F  + ERN V+W + I G  
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCV 226

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA---KLEDPGM 374
           QN +    +E F  M+  G+  +  +      +C     +  G    + A   K     +
Sbjct: 227 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 286

Query: 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +       +VD+ +++    +A+   + LP
Sbjct: 287 VG----TAIVDVYAKANSLTDARRAFFGLP 312



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 185/447 (41%), Gaps = 95/447 (21%)

Query: 65  FDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124
           F  +P+ N VS  + I    +   Y   + LF  M  L +  S+ ++ S   S  A+  L
Sbjct: 207 FYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           N G+QLHA A K    S+  VG+AI+D+Y K +S+ +A R F    N  V +   M+ GL
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 185 L---------------------------------------------KRERFEDALKLFQE 199
                                                         K +   +A  +FQ 
Sbjct: 327 FMIRSSIRFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGKCKALMEAYLIFQG 386

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           M  ++ VSWNA+I    Q G  ++ +  F EMLR                          
Sbjct: 387 MKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR-------------------------- 420

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
                         D FV ++++  Y KCG ++++  + D++  + +V+WNA++ G++ N
Sbjct: 421 -------------FDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLN 467

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH 379
              E A +FF  M   G++P+  T   +L  C +   +E G     Q   ++  ML  E+
Sbjct: 468 KESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE--MLDDEY 525

Query: 380 Y-ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
             + +VD+ ++ G   ++   +++         W A++ G  +H    LG  A R    +
Sbjct: 526 ISSTLVDMYAKCGDMPDSL-LVFEKVEKRDFVSWNAMICGYALHG---LGVEALRMFERM 581

Query: 439 DPEDV----SSYVMLSNALSVAGKWDN 461
             E+V    +++V +  A S  G +D+
Sbjct: 582 QKENVVPNHATFVAVLRACSHVGLFDD 608



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 150/323 (46%), Gaps = 55/323 (17%)

Query: 45  RTDSVSCG------SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98
           R D+VS        S +   S+   +FD +PD +VVS   ++  + ++  ++E++ LF  
Sbjct: 80  RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           M    + P   TF  ++ S +ALE+L+LG Q+HA A K GL+ +V  GSA++D+Y K  S
Sbjct: 140 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 199

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           +++A   F      N VS+ + I G ++ E++   L+                       
Sbjct: 200 LDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLE----------------------- 236

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
                   LFIEM R GL  +  +   A  + A ++ L  G+  HA A+K     D  VG
Sbjct: 237 --------LFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG 288

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
            +++  YAK  S+ D+   F  L    + T NA++ G            F  R   + IR
Sbjct: 289 TAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL-----------FMIR---SSIR 334

Query: 339 PNGVTLLGLLWACNHTGLVEKGY 361
            + V+L G+  AC  T    KGY
Sbjct: 335 FDVVSLSGVFSACAET----KGY 353



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 4/171 (2%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            ++ D +    VVS   I+  F+     E A   FS ML + ++P  FTF +V+ +   L
Sbjct: 443 QKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANL 502

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             + LGKQ+H    K  +  + ++ S ++D+Y K   + ++  VFE     + VS+  MI
Sbjct: 503 ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 562

Query: 182 CGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQTGRNEEAVNLF 228
           CG        +AL++F+ M   NVV    ++ A++   S  G  ++    F
Sbjct: 563 CGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYF 613


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/459 (35%), Positives = 245/459 (53%), Gaps = 39/459 (8%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           SCG      ++   VFD   +  VV    I+  + K   + E + +F  ML + +   E 
Sbjct: 167 SCGD----VAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEV 222

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T  SV+ +   + D  LGK +     + GL  N  + +A++D+Y K              
Sbjct: 223 TLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAK-------------- 268

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       CG + + R     +LF  M  R+VV+W+AMI GY+Q  +  EA+ LF 
Sbjct: 269 ------------CGEIGKAR-----RLFDGMQSRDVVAWSAMISGYTQADQCREALGLFS 311

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           EM    + PN  T+   + A A + AL  GK  H+   +    L   +G +L+ FYAKCG
Sbjct: 312 EMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCG 371

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++D++  F+ +  +N  TW A+I G A NGRG EA+E F  MR  GI P  VT +G+L 
Sbjct: 372 CIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLM 431

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           AC+H+ LVE+G  +F  +   D G +KP  EHY CMVDLL R+G   EA +F+  +P +P
Sbjct: 432 ACSHSCLVEEGRRHF-DSMARDYG-IKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEP 489

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
               W+ALL  C +H NV +GE A ++I++L+P     YV+LSN  + AG+W + + +R+
Sbjct: 490 NAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRK 549

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           EMK++G+ + PGCS IE+   V  F   D +H    EIY
Sbjct: 550 EMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIY 588



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 152/307 (49%), Gaps = 17/307 (5%)

Query: 193 ALKLFQ--EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR--EGLVPNHSTLPCAII 248
           A+ LF+    P  +   +N ++  +   G  E+A++LFIEML        +  T  CA+ 
Sbjct: 69  AVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALK 128

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           + + + AL +G+   A AVK     D FV +SLI  YA CG +  + LVFD   E  +V 
Sbjct: 129 SCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVM 188

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368
           WNA++  Y +NG   E +E F+ M   G+  + VTL+ ++ AC   G  + G   +    
Sbjct: 189 WNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLG--KWVAGH 246

Query: 369 LEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE- 426
           +++ G+ + P+    ++D+ ++ G   +A+  L+D      +  W A++ G         
Sbjct: 247 VDEEGLARNPKLVTALMDMYAKCGEIGKARR-LFDGMQSRDVVAWSAMISGYTQADQCRE 305

Query: 427 -LGEFAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREMKEKGMTRVPGCS 481
            LG F+  ++  ++P DV+   +LS    +     GKW + S +RR  K   +T + G +
Sbjct: 306 ALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVH-SYVRR--KRLSLTTILGTA 362

Query: 482 WIEIKSK 488
            ++  +K
Sbjct: 363 LVDFYAK 369



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 5/211 (2%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P + T  +   ++  +     ++FD +   +VV+ + +I  + +     EA+ LFS M L
Sbjct: 256 PKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQL 315

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
             + P++ T  SV+ +   L  L  GK +H++  +  L     +G+A++D Y K   I++
Sbjct: 316 ARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDD 375

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQ 217
           A   FE     N  ++T +I G+    R  +AL+LF  M    +    V++  ++   S 
Sbjct: 376 AVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSH 435

Query: 218 TGRNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
           +   EE    F  M R+ G+ P      C +
Sbjct: 436 SCLVEEGRRHFDSMARDYGIKPRVEHYGCMV 466


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 248/464 (53%), Gaps = 58/464 (12%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
            S   +VFD++P+ NVVS T +I  + ++   EEA  LF RM                  
Sbjct: 41  ISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMP----------------- 83

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                                 + NV   + +L   I+   ++EA ++F+     +VV+ 
Sbjct: 84  ----------------------ERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAS 121

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG-------------YSQTGRNEEA 224
           T MI GL    R  +A ++F EMP RNVV+W +MI G             Y + G   EA
Sbjct: 122 TNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEA 181

Query: 225 VNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
           + LF  M REG+ P+  ++   +    ++A+L  G+  H+  V+    +D++V + LI+ 
Sbjct: 182 LALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITM 241

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y KCG +  +  VFD+ + ++IV WN++I GYAQ+G GE+A+E F  M  + I P+ +T 
Sbjct: 242 YIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITF 301

Query: 345 LGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
           +G+L AC++TG V++G   F   K +   DP   K EHYACMVDLL R+G+  EA   + 
Sbjct: 302 IGVLSACSYTGKVKEGLEIFESMKSKYQVDP---KTEHYACMVDLLGRAGKLNEAMNLIE 358

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
           ++P +     W ALLG C+ H N++L E AA+++L L+P +   Y++LSN  S   +W +
Sbjct: 359 NMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKD 418

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEI 505
           V  +R+ M+ K + + PGCSWIE+  KVH+F  G    H   E+
Sbjct: 419 VVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEM 462



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 21/227 (9%)

Query: 153 YIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMI 212
           Y +     EA ++F+     N +S+  ++ G ++     +A K+F +MP RNVVSW AMI
Sbjct: 4   YFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMI 63

Query: 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272
            GY Q G  EEA  LF  M    +V + + +   +I    +      + F    VK    
Sbjct: 64  RGYVQEGLIEEAELLFWRMPERNVV-SWTVMLGGLIEDGRVDE--ARQLFDMMPVK---- 116

Query: 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG-------------YAQN 319
            DV    ++I      G + ++  +FD++ +RN+V W ++I G             Y + 
Sbjct: 117 -DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERK 175

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           G   EA+  F  M+  G+RP+  +++ +L  C     ++ G    SQ
Sbjct: 176 GFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQ 222


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/391 (38%), Positives = 224/391 (57%), Gaps = 6/391 (1%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +HA A + G   +  V S  + +Y     +  A   F +  +P+VV  T M+  L     
Sbjct: 217 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGE 276

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
            + A +LF  MP R+ V+WNAMI GY  TGR+ EA+ LF EM   G      TL  A+ A
Sbjct: 277 ADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTA 336

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A + AL  GK  H+CA     +L V +G +LI  Y+KCG++  ++ VFD + ERN+ TW
Sbjct: 337 CAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTW 396

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
            + + G A NG G + +  F+RM   G+ PNGVT + +L  C+  GLV++G + F   K 
Sbjct: 397 TSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKS 456

Query: 370 E---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
               DP +   EHY CMVDL  R+GR  +A  F+  +P +P  G W ALL   +IH NVE
Sbjct: 457 NHGIDPWL---EHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVE 513

Query: 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           LG++A  +++A++ ++ +++V+LSN  + +  W  VSN+R  MK KG+ +VPGCS IE+ 
Sbjct: 514 LGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVG 573

Query: 487 SKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            KVH F  G + H  + EI  +L    +++R
Sbjct: 574 GKVHEFFVGGKTHPRHKEIEMMLAEMNQRLR 604



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 7/188 (3%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           +++ G E+D   +  ++FD +P  + V+   +I  +       EA+ LF  M        
Sbjct: 270 ALATGGEAD---AARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVG 326

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           E T  S + +   L  L  GK +H+ A   G++ +V +G+A++D+Y K  ++  A  VF+
Sbjct: 327 EVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFD 386

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEE 223
                NV ++T+ + GL       D L LF+ M    V    V++  ++ G S  G  +E
Sbjct: 387 SMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDE 446

Query: 224 AVNLFIEM 231
               F  M
Sbjct: 447 GRACFDSM 454


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 255/468 (54%), Gaps = 18/468 (3%)

Query: 56  DKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFG 112
           ++  +   VFD VP  +  +     +I  +A+    E+A+ LF+RM     + PSE T  
Sbjct: 319 ERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIA 378

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
            V+PS    E     + +H +  K G+  N FV +A++DLY +L  ++ A  +F      
Sbjct: 379 GVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPR 438

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +VVS+ T+I G + +    DA +L +EM  +   +  A   G +  G +EE V       
Sbjct: 439 DVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIA--GADEEPV------- 489

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
               VPN+ TL   +   A +AA   GK  H  AV+     DV VG++L+  YAKCG + 
Sbjct: 490 ----VPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLA 545

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWAC 351
            S  VFD+L  RN++TWN +I  Y  +G G+EAI  F+RM  +   +PN VT +  L AC
Sbjct: 546 LSRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAAC 605

Query: 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIG 410
           +H+G+V++G   F   K        P+ +AC VD+L R+GR  EA   +  + P +  + 
Sbjct: 606 SHSGMVDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVS 665

Query: 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
            W + LG C++H NV LGE AA R+  L+P++ S YV+L N  S AG W+  S +R  M+
Sbjct: 666 AWSSFLGACRLHRNVALGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMR 725

Query: 471 EKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           ++G+++ PGCSWIE+   +H F+ G+  H  +  ++A + +  E++R+
Sbjct: 726 QRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRD 773



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 180/396 (45%), Gaps = 43/396 (10%)

Query: 41  TPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100
           TPA+    ++  +     ++   +FD +P  + V+  ++I        +  A+     ML
Sbjct: 93  TPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDML 152

Query: 101 LLNIRPSEFTFGSVIPSSTAL-EDLNLGKQLHAWATKVGL--QSNVFVGSAILDLYIKLS 157
           L     + FT  SV+ + + L EDL LG++ HA+A K G       F  +A+L +Y +L 
Sbjct: 153 LEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLG 212

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
            +++A  +F      +V                          P   VV+WN M+    Q
Sbjct: 213 LVDDAQTLFGSVGATDV--------------------------PGGGVVTWNTMVSLLVQ 246

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVF 276
           +GR  EA+ +  +M+  G+ P+  T   A+ A + +  L +G+  HA  +K      + F
Sbjct: 247 SGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSF 306

Query: 277 VGNSLISFYAKCGSMEDSLLVFDKLT--ERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
           V ++L+  YA    +  + LVFD +   ER +  WNA+ICGYAQ G  E+A+E F RM  
Sbjct: 307 VASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMET 366

Query: 335 N-GIRPNGVTLLGLLWACNHTGLV---EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390
             G+ P+  T+ G+L +C  +      E  + Y  +  + D     P     ++DL +R 
Sbjct: 367 EAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMAD----NPFVQNALMDLYARL 422

Query: 391 GRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNV 425
           G    A+     + P D  +  W  L+ GC +  ++
Sbjct: 423 GDMDAARWIFATIEPRD--VVSWNTLITGCVVQGHI 456



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 40/202 (19%)

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            LP A  +AA + +L   +S H  A++   L      V N+L++ YA+CG +  +L +FD
Sbjct: 59  ALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALFD 118

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH------ 353
            +  R+ VT+N++I       R   A++    M + G      TL+ +L AC+H      
Sbjct: 119 AMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDLR 178

Query: 354 --------------------------------TGLVEKGYSYFSQAKLEDPGMLKPEHYA 381
                                            GLV+   + F      D        + 
Sbjct: 179 LGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWN 238

Query: 382 CMVDLLSRSGRFKEAKEFLYDL 403
            MV LL +SGR  EA E LYD+
Sbjct: 239 TMVSLLVQSGRCGEAIEVLYDM 260


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 259/468 (55%), Gaps = 17/468 (3%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           +E  +      +FD + D NVV+ T++I  + +  + +E   LF +M   N+       G
Sbjct: 211 AEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIG 270

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
               +    E LN             +  N    +++++ YI++  +E+A  +F+     
Sbjct: 271 GFAWNGFYKEALN------------SMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVR 318

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           + +S+T+MI G     +   A  LF  MP R+ V+W  M+ G+ Q     EA  LF EM 
Sbjct: 319 DKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMR 378

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
            +G+ P +ST    + AA  +A L  G+ FH   +K   + D+ + NSLIS YAKCG + 
Sbjct: 379 VKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIG 438

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+  +F K+  R++++WN++I G++ +G   EA++ FE M  +G  PN VT LG+L AC+
Sbjct: 439 DAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACS 498

Query: 353 HTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG 410
           H GL+ +G+  F    + D   ++P  EHY CMV+LL R+G+ +EA+EF+  LPF+P + 
Sbjct: 499 HAGLLNQGWELFD--AMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLT 556

Query: 411 FWKALLGGCQIHS-NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
            W ALLG C     N  +   AA+R+L LDP +  ++V+L N  +  G+      +R+EM
Sbjct: 557 IWGALLGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEM 616

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
             KG+ +VPGCSWI +K + +VF++GDR H   DE+ ++L    ++ R
Sbjct: 617 GLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQADEMLSLLFGTEDESR 664



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 154/324 (47%), Gaps = 34/324 (10%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
           + NV   +A+L  Y++   + +A R FE+    NVVS+T+++CGL    R  +A +LF  
Sbjct: 104 ERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNV 163

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           MP RNVVSWN+M+ G  ++G+ EEA  +F EM      P  S +   ++    IA     
Sbjct: 164 MPERNVVSWNSMLVGLIRSGQLEEARRVFNEM------PVKSQVSWNVM----IAGYAEH 213

Query: 260 KSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA 317
                  V F  +G  +V    S+IS Y + G++++   +F K+ ERN+V+W A+I G+A
Sbjct: 214 SRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFA 273

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377
            NG  +EA        +N +  N  +   ++      G +EK  S F    + D      
Sbjct: 274 WNGFYKEA--------LNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRD-----K 320

Query: 378 EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE-----FAA 432
             +  M++     G+  +A     ++P    +  W  ++ G   H   EL       F+ 
Sbjct: 321 ISWTSMINGYFNVGQIAKACYLFNNMPDRDAVA-WTVMVSG---HVQNELFAEATYLFSE 376

Query: 433 RRILALDPEDVSSYVMLSNALSVA 456
            R+  + P + +  ++L  A ++A
Sbjct: 377 MRVKGVSPLNSTFSILLGAAGAMA 400



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 163/364 (44%), Gaps = 39/364 (10%)

Query: 7   ICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETP------AIRTDSVSCGSESDKFSS 60
           +C +SL L+K SK      N  I+  +A  + +         A+ +  V CG  SD    
Sbjct: 77  VCWTSL-LSKFSK------NGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSD---- 125

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
             + F+E+P+ NVVS T+++   A      EA  LF+ M   N+         +I S   
Sbjct: 126 ACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQL 185

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
            E   +  ++     K  +  NV +       Y + S +EEA  +F+   + NVV++T+M
Sbjct: 186 EEARRVFNEM---PVKSQVSWNVMIAG-----YAEHSRMEEARVLFDGMGDRNVVTWTSM 237

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G  +    ++   LFQ+MP RNVVSW AMIGG++  G  +EA+N         +  N 
Sbjct: 238 ISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALN--------SMSYNT 289

Query: 241 STLPCAIIAAANIAALGMGKS-FHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            +    I     I  L   +S F    V+     D     S+I+ Y   G +  +  +F+
Sbjct: 290 QSCNSMINGYIRIGQLEKAQSLFDTIPVR-----DKISWTSMINGYFNVGQIAKACYLFN 344

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            + +R+ V W  ++ G+ QN    EA   F  MR+ G+ P   T   LL A      +++
Sbjct: 345 NMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQ 404

Query: 360 GYSY 363
           G  +
Sbjct: 405 GRQF 408



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 117/263 (44%), Gaps = 52/263 (19%)

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPH-------------------------- 202
           TH   +    + I   L ++R  +A  +  EMP+                          
Sbjct: 36  THYSKLRFDDSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEA 95

Query: 203 ---------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
                    RNVV++NAM+ GY Q GR  +A   F EM    +V + ++L C +   AN 
Sbjct: 96  RALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVV-SWTSLLCGL---ANA 151

Query: 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVI 313
             +G  +         + + +V   NS++    + G +E++  VF+++  ++ V+WN +I
Sbjct: 152 GRIGEAREL----FNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMI 207

Query: 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373
            GYA++ R EEA   F+ M   G R N VT   ++      G V++GY  F   K+ +  
Sbjct: 208 AGYAEHSRMEEARVLFDGM---GDR-NVVTWTSMISGYCRAGNVQEGYCLFQ--KMPERN 261

Query: 374 MLKPEHYACMVDLLSRSGRFKEA 396
           ++    +  M+   + +G +KEA
Sbjct: 262 VVS---WTAMIGGFAWNGFYKEA 281


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/504 (31%), Positives = 264/504 (52%), Gaps = 42/504 (8%)

Query: 12   LSLNKLSKL-HSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD 70
            ++L   S+L H L     +  +   +     P + T  +S  ++        +VFDE+P 
Sbjct: 554  IALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPH 613

Query: 71   LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
             + V  T +I  +       EA+++        +RP  FT   V+ +   + DL  G+ +
Sbjct: 614  PSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETV 673

Query: 131  HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
               A + G+  +VFV +A +DLY+K                          CG + + R 
Sbjct: 674  WRAAEQEGVAQSVFVATAAVDLYVK--------------------------CGEMAKAR- 706

Query: 191  EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
                ++F +M H++ V+W AM+GGY+  G   EA++LF+ M  EG+ P+   +  A+ A 
Sbjct: 707  ----EVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSAC 762

Query: 251  ANIAALGMGKSFHACAVKFLGKLDVFV-----GNSLISFYAKCGSMEDSLLVFDKLTERN 305
              + AL +G+     A++ +   D F+     G +LI  YAKCGS  ++ +VF ++ +++
Sbjct: 763  TRLGALDLGRQ----AIRMV-DWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKD 817

Query: 306  IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
            I+ WNA+I G    G  + A     +M  +G++ N  T +GLL +C HTGL++ G  YF 
Sbjct: 818  IIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 877

Query: 366  QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
                      + EHY CMVDLLSR+G  +EA + + D+P         ALLGGC+IH N 
Sbjct: 878  NMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNT 937

Query: 426  ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
            EL E   ++++ L+P +  +YVMLSN  S  G+W++ + +R +MK KG+ +VP CSW+E 
Sbjct: 938  ELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEF 997

Query: 486  KSKVHVFVTGDRNHHMNDEIYAVL 509
            + KVH F  GD++H ++D+IY  L
Sbjct: 998  EGKVHEFRVGDKSHPLSDQIYKKL 1021


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/462 (34%), Positives = 263/462 (56%), Gaps = 40/462 (8%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTFGSVIPSSTA 120
            ++FDE+P+ ++VS  +++   + + +    +  F RM   + R P+E T  SV+ +   
Sbjct: 117 QRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAD 176

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           +  L+ GK LH    K+G+     V ++++++Y KL  ++ A+                 
Sbjct: 177 MGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAAS----------------- 219

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                         +LF+EMP R++VSWN+M+  ++  G  E+ ++LF  M R G+ P+ 
Sbjct: 220 --------------QLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQ 265

Query: 241 STLPCAIIAAANIAALG-MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           +T+  A++ A     LG   +S HA   +     D+ +  +L++ YAK G +  S  +F+
Sbjct: 266 ATM-VALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFE 324

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ +R+ + W A++ GYA +  G EAI+ F+ M   G+  + VT   LL AC+H+GLVE+
Sbjct: 325 EIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEE 384

Query: 360 GYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G  YF   S+    +P   + +HY+CMVDLL RSGR ++A E +  +P +P  G W ALL
Sbjct: 385 GKKYFEIMSEVYRVEP---RLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 441

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C+++ NVELG+  A ++L+LDP D  +Y+MLSN  S AG W + S +R  MKE+ +TR
Sbjct: 442 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTR 501

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            PGCS+IE  +K+H FV GD+ H  +DEI+  L     +IRE
Sbjct: 502 NPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIRE 543



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 9/237 (3%)

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIA 249
           EDA +LF EMP++++VSWN+++ G S  G     +N F  M  E G  PN  TL   + A
Sbjct: 114 EDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSA 173

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A++ AL  GKS H   VK        V NSLI+ Y K G ++ +  +F+++  R++V+W
Sbjct: 174 CADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSW 233

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL---VEKGYSYFSQ 366
           N+++  +  NG  E+ ++ F  M+  GI P+  T++ LL AC  TGL    E  ++Y  +
Sbjct: 234 NSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR 293

Query: 367 AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
                  ++       +++L ++ GR   +++   ++     I  W A+L G  +H+
Sbjct: 294 CGFNADIIIA----TALLNLYAKLGRLNASEDIFEEIKDRDRIA-WTAMLAGYAVHA 345



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 4/167 (2%)

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           +S +   + A ++  ++    + HA  +K L   D F+G+ L+S Y K G  ED+  +FD
Sbjct: 62  YSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 121

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVE 358
           ++  +++V+WN+++ G +  G     +  F RMR  +G +PN VTLL ++ AC   G ++
Sbjct: 122 EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 181

Query: 359 KGYSYFS-QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +G S      KL   G  K +    ++++  + G    A +   ++P
Sbjct: 182 EGKSLHGVVVKLGMSG--KAKVVNSLINMYGKLGFLDAASQLFEEMP 226


>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 548

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 168/510 (32%), Positives = 268/510 (52%), Gaps = 38/510 (7%)

Query: 36  VQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHH---YE 90
           ++ L  PA    ++   S S +++    +FD VP    NV   T  +  +AK        
Sbjct: 33  LRGLPLPARAAVTLIASSSSPQYA--RAIFDSVPAASANVYLWTATVSSYAKHASPALAA 90

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150
           EA  LF  ML    RP+ FT  SV+ S + L   +   Q+H +  K GL S++ VG+ +L
Sbjct: 91  EAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVCQVHGFLVKAGLASSLHVGATLL 150

Query: 151 DLYIKLSSIEEATRVFEDTHNPNVV-------------------------------SYTT 179
           D Y  L  +++A RVF++    NVV                               S+ T
Sbjct: 151 DSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKAGDVEAARQVFDGMVERDSISWNT 210

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           ++ G L+R     A  LF EMP RNV SWN MI   S+ G   ++V +F +M      P+
Sbjct: 211 LMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISACSEVGLWADSVAVFNQMRFMSFRPD 270

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            +T+   + A A +  L + +  +    K   +++  V NSL+  +AKCG   ++ L+F 
Sbjct: 271 AATMAVLMSACAQLGFLSVARQVYGLLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFA 330

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++  +++V++N ++   A +G G++A++ FE+M   G++P+ VT LG+L AC H GLV+ 
Sbjct: 331 EMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDS 390

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G  YF             +HYACMVDL  R G  +EA  F+  +P  P  G W ALL  C
Sbjct: 391 GKYYFETMGTTYAIEKSADHYACMVDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNAC 450

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           + H N+++GE AAR ++ ++P +  +YV+LSN L+ + +WD V ++R+ M+  G+ +  G
Sbjct: 451 RKHCNIDVGEVAARELIRIEPMNPGNYVLLSNTLAWSQQWDAVGDVRQLMRGNGIDKNTG 510

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            SW+E++S VH F+ GD +H   DEI  +L
Sbjct: 511 FSWVEVESVVHEFLMGDFSHPSFDEICGIL 540


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 231/416 (55%), Gaps = 31/416 (7%)

Query: 101 LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160
           L N+RP E T  S++P+   L +L  GK LH+++ ++GL  N+ V +AILD+Y K   IE
Sbjct: 4   LDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIE 63

Query: 161 EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220
            A  VF                                 +  ++V+SW +M+ G +++G 
Sbjct: 64  SAQEVF-------------------------------NRIREKDVLSWTSMLSGLAKSGY 92

Query: 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
            +E++ LF +M    + P+  TL   + A A   AL  GK  H    KF    D+ +  +
Sbjct: 93  FQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETA 152

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L+  YAKCGS++ +L VF ++  RN+ TWNA+I G A +G GE+AI  F++M  + + P+
Sbjct: 153 LVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPD 212

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400
            VT + LL AC+H GLV++G + F   K +     + EHY C+VDLL R+ +  +A  F+
Sbjct: 213 DVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFI 272

Query: 401 YDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
            ++P       W  LLG C+   + +L E   RR++ L+P+    YVMLSN  +   +WD
Sbjct: 273 ENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWD 332

Query: 461 NVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           +   +R++MK KG+ + PGCSWIE+   +H FV GDR+H   ++IYA++   T ++
Sbjct: 333 HALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRV 388



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 4/182 (2%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           + D   S  +VF+ + + +V+S T+++   AK  +++E++ LF +M L  I P E T   
Sbjct: 58  KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVG 117

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+ +      L+ GK +H    K  +  ++ + +A++D+Y K  SI+ A +VF      N
Sbjct: 118 VLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRN 177

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFI 229
           V ++  MI GL      EDA+ LF +M    +    V++ A++   S  G  +E + +F 
Sbjct: 178 VFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQ 237

Query: 230 EM 231
            M
Sbjct: 238 AM 239


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 152/431 (35%), Positives = 237/431 (54%), Gaps = 5/431 (1%)

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPS---STALEDL-NLGKQLHAWATKVGLQSNVFVGS 147
           A+ L++ +L     P+  T  S++ S   S A+     L   +HA A K+GL   + V +
Sbjct: 190 ALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHAHAVKLGLAGFLLVSN 249

Query: 148 AILDLYIK-LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           A++ ++   L  + +A  +     + +  ++ T+I    +  R  DA  LF EMP RN V
Sbjct: 250 ALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAV 309

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           SW+AM+ GY Q G   EA+ LF  M  +G+ P+ + L   + A A +  L  GK  H   
Sbjct: 310 SWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYL 369

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
                ++ VF+G +L+  YAKCG M+ ++ VF  + E+N++ W  +I G A +GRG EA+
Sbjct: 370 KANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEAL 429

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386
           E F +M   G++P+ +  +G L AC HTGLV+KG   F     +     K EHY CMVDL
Sbjct: 430 ELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDL 489

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446
           L+R+G   EA+E +  +P  P    W AL+ GC+ H NVEL E+  +  + L+P+   +Y
Sbjct: 490 LARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAY 549

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           V+L N  + +G+  +   IR  M+EKG+ + PGCS +EIK  +H F+ GD +H   +EI 
Sbjct: 550 VLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEIL 609

Query: 507 AVLRSCTEQIR 517
           +       +IR
Sbjct: 610 SKWDEIDSRIR 620



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 130/277 (46%), Gaps = 46/277 (16%)

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI----IAAANIAALGMGKSFHA 264
           NA+I   + + R   A+ L+  +LR G  P   TLP  +    ++ A   A G+  + HA
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234

Query: 265 CAVKF-------------------LGKL-------------DVFVGNSLISFYAKCGSME 292
            AVK                    LG+L             D    N+LI+ YA+ G + 
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+  +FD++  RN V+W+A++ GY Q G G EA+  F RM+ +G+RP+   L+G+L AC 
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 353 HTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
             G++E+G   + Y     +     L       +VD+ ++ G  + A E ++ +  +  +
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLG----TALVDMYAKCGEMQLAME-VFKVMKEKNV 409

Query: 410 GFWKALLGGCQIH--SNVELGEFAARRILALDPEDVS 444
             W  ++ G  +H   +  L  F+    L + P+D++
Sbjct: 410 LAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIA 446



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 103/204 (50%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           ++  + + + +    +FDE+P  N VS + ++  + +     EA+ LF+RM    +RP +
Sbjct: 284 ITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDD 343

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
                V+ +   L  L  GK +H +     ++  VF+G+A++D+Y K   ++ A  VF+ 
Sbjct: 344 TVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKV 403

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEA 224
               NV+++TTMI GL    R  +AL+LF +M    V    +++   +   + TG  ++ 
Sbjct: 404 MKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKG 463

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
             LF  M+R+ G+ P      C +
Sbjct: 464 RELFDSMVRKYGIKPKIEHYGCMV 487


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/481 (33%), Positives = 260/481 (54%), Gaps = 39/481 (8%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T+ +   +E  +     +VFD +P   +V+   +I  ++K    +++I LF ++    
Sbjct: 180 IGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREG 239

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           I   E+T+  V+    A   +    Q+H+   + G  S+ F  +A+++LY K   +  A+
Sbjct: 240 ISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASAS 299

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           R+FE                               E+P ++VVSW  +I G+ Q+G  EE
Sbjct: 300 RLFE-------------------------------EIPDQDVVSWTVIIVGFLQSGHMEE 328

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLI 282
           A+ LF +M    + PN  T    + A A+  A   G+ FH   +KF L   DV VG++++
Sbjct: 329 AMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVV 388

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI---NGIRP 339
             Y+KCG M D+L  F ++ ER+I +WN +ICGYAQNG G +A++ +  M +   +GI P
Sbjct: 389 DMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAP 448

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAK 397
           N VT +G+L AC+H GL+++GYSYF +  + D  ++KP  EHY CMVDLL R+G  +EA+
Sbjct: 449 NEVTFVGVLCACSHNGLLKEGYSYFKE--MVDKHLIKPTAEHYTCMVDLLGRAGLLQEAE 506

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
             +  LP  P    W ALLG C++H +V++    A  +   +P + S+YV+L+N+ +  G
Sbjct: 507 ALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSYTDIG 566

Query: 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           +W     IR  M+ +G+ +  GCSW+EI + +H F+ GD  H   +    VL     Q+R
Sbjct: 567 EWGEAVEIREVMEARGVEKTAGCSWVEIGTCMHSFLAGDXLHPQIEVASQVLPRLYLQMR 626

Query: 518 E 518
           E
Sbjct: 627 E 627



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 36/304 (11%)

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           LHA   K GL ++V+  + +L  YI   ++ +A ++      P+VVSY T++ G  K   
Sbjct: 37  LHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFGL 96

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST----LPC 245
             +A+KLF     R+  SWN ++ G  +  +  E +  F++M    + P++ T    +PC
Sbjct: 97  VSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIPC 156

Query: 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
                     LG G+  HA  VK    LD F+G +L+  YA+ G + D+  VFD +  R 
Sbjct: 157 C--------DLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRG 208

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL------WAC-----NHT 354
           +VTWNA+I  Y++ GRG+++I  F ++   GI  +  T   +L      W        H+
Sbjct: 209 LVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHS 268

Query: 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA 414
            ++E+G   F   +  +           +V+L S+ G    A     ++P D  +  W  
Sbjct: 269 LIIERG---FCSDRFTNNA---------LVNLYSKCGYVASASRLFEEIP-DQDVVSWTV 315

Query: 415 LLGG 418
           ++ G
Sbjct: 316 IIVG 319


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 247/451 (54%), Gaps = 34/451 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL--NIRPSEFTFGSVIPSSTAL 121
           +F  +   N+ +    +   A+  H+  AI  F+  +       P EFTF SV+ +   L
Sbjct: 46  IFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGL 105

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             +  G+++HA  TK G +SN+FV ++++D+Y K   +                      
Sbjct: 106 AHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYL---------------------- 143

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE--GLVPN 239
             LL R  F++       +  RNVV WNAMI GY+Q  +  +A+ +F  M+++  G+VPN
Sbjct: 144 --LLARHLFDEMF-----VRDRNVVCWNAMIAGYAQNEKYSDAIEVF-RMMQQFGGVVPN 195

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             TL   + A A++ AL +GK       +    L +F+GN+L   YAKCG + ++  VF+
Sbjct: 196 DVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFN 255

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           K+ ER++++W+ +ICG A  G  +EA   F  M   G +PN V  +GLL AC H GLV+K
Sbjct: 256 KMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKK 315

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G + F+    E     K EHY C+VDLLSR+G   +A++ +  +P  P +  W ALLGGC
Sbjct: 316 GLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGC 375

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479
           +I+ +   G+   + IL LD +   SYV L+N  S  G+ D+ +  R  M+E G+ + PG
Sbjct: 376 RIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPG 435

Query: 480 CSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           CSWIE+ + VH F  GD +H  +++IY+++R
Sbjct: 436 CSWIEVDNTVHEFFMGDLSHPESNKIYSMIR 466



 Score = 45.1 bits (105), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 34/177 (19%)

Query: 59  SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118
           +   +VF+++ + +V+S + II   A   H +EA   F  ML    +P++  F  ++ + 
Sbjct: 248 TEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTAC 307

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           T           HA   K GL  N F            +++++   V     +P V  Y 
Sbjct: 308 T-----------HAGLVKKGL--NCF------------NTMDKEYGV-----SPKVEHYG 337

Query: 179 TMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGG---YSQTGRNEEAVNLFIEM 231
            ++  L +    + A  +   MP + NV+ W A++GG   Y  +GR +  V   +E+
Sbjct: 338 CVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILEL 394


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 163/466 (34%), Positives = 256/466 (54%), Gaps = 9/466 (1%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           C S S   +  +++F  +P+ N+ S  TII  F++    + AI LF  ML   I+P   T
Sbjct: 70  CASPSGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLT 129

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE--- 167
           + SV  +   L   + G QLH    K+GLQ++ F+ + I+ +Y     + EA RVF+   
Sbjct: 130 YPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKK 189

Query: 168 -DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
            + ++ +VV+  +MI G  K    +++  LF +M  R  VSWN+MI GY + G+  EA+ 
Sbjct: 190 LELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALE 249

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF +M  EG   +  T+   + A A++ AL  GK  H    +   +L+V V  ++I  Y 
Sbjct: 250 LFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYC 309

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLL 345
           KCGS+E+++ VF+    R +  WN++I G A NG   EA EFF ++  +  ++P+ V+ +
Sbjct: 310 KCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFI 369

Query: 346 GLLWACNHTGLVEKGYSYFS--QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
           G+L AC H G + K   YF     K E    +K  HY C+VD+L ++G  +EA+E +  +
Sbjct: 370 GVLTACKHLGAINKARDYFELMMNKYEIEPSIK--HYTCIVDVLGQAGLLEEAEELIKGM 427

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           P  P    W +LL  C+ H NV++   AA+R+  L+P D S YV++SN  + + K++   
Sbjct: 428 PLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAI 487

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
             R  MKE    + PGCS IE+  +VH F+ G R H    EIY +L
Sbjct: 488 EQRLLMKENLTEKEPGCSSIELYGEVHEFIAGGRLHPKTQEIYHLL 533


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 260/468 (55%), Gaps = 16/468 (3%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML----LLNIRPSE 108
           S +  FS   +VFDE+P  N+VS  T+I  F     Y E++ +F +M     LL +   E
Sbjct: 88  SRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLAL--DE 145

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  S+  +   L  L   +Q+H  A  +GL+ N+ V +AI+D Y K    + +  +F  
Sbjct: 146 ITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSR 205

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
               +VV++T+M+    +  R +DA ++F  MP +NV +W A+I    +   + EA++LF
Sbjct: 206 MKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLF 265

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL---DVFVGNSLISFY 285
            +ML E   PN  T    + A A++A +  GK  H   ++   +L   +V+V N+LI  Y
Sbjct: 266 QQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLY 325

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           +K G ++ + ++F+ + E+++V+WN++I G+AQNG G EA+  F +M   GIRPN VT L
Sbjct: 326 SKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFL 385

Query: 346 GLLWACNHTGLVEKGYSYFS-QAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYD 402
            +L AC+HTGL  +G        K  D   ++P  EHYA M+D+  R  R  EA + +  
Sbjct: 386 AVLSACSHTGLSSEGLCILELMEKFYD---IEPSLEHYAVMIDMFGRENRLAEALDLISR 442

Query: 403 LPF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
            P     +G W A+LG C+IH N++L   AA  +  ++P++   YVMLSN  + A +W +
Sbjct: 443 APNGSKHVGIWGAVLGACRIHENLDLAIRAAETLFEMEPDNAGRYVMLSNVFAAASRWMD 502

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
             N+R+ M+E+G  +    S IEI++  H FV  D +H    EIY ++
Sbjct: 503 AHNVRKLMEERGFKKEVAYSCIEIRNIRHKFVARDNSHSQMGEIYELM 550



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 156/330 (47%), Gaps = 36/330 (10%)

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L +G  LH+   K  L  ++F+ + ++D+Y K +S+E A + F+D    N+ S+ T++  
Sbjct: 27  LRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILAS 86

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG--LVPNHS 241
             +   F  A K+F EMPH N+VS+N +I  ++  G   E++N+F +M ++   L  +  
Sbjct: 87  YSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEI 146

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           TL       A + AL   +  H  A+    + ++ V N+++  Y KCG  + S  +F ++
Sbjct: 147 TLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRM 206

Query: 302 TERNIVTWNAVICGYAQNGR-------------------------------GEEAIEFFE 330
            ER++VTW +++  Y Q  R                                 EA++ F+
Sbjct: 207 KERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQ 266

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC--MVDLLS 388
           +M      PN  T +G+L AC    L+ KG             +  P  Y C  ++DL S
Sbjct: 267 QMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYS 326

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +SG  K A+  L++L  +  +  W +L+ G
Sbjct: 327 KSGDVKSAR-MLFNLILEKDVVSWNSLITG 355



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 7/187 (3%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V   +++ +     +VF  +P  NV + T +I    K  +  EA+ LF +ML     
Sbjct: 215 TSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTS 274

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ---SNVFVGSAILDLYIKLSSIEEA 162
           P+ FTF  V+ +   L  +  GK++H    +   +    NV+V +A++DLY K   ++ A
Sbjct: 275 PNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSA 334

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQT 218
             +F      +VVS+ ++I G  +     +AL  F++M       N V++ A++   S T
Sbjct: 335 RMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFLAVLSACSHT 394

Query: 219 GRNEEAV 225
           G + E +
Sbjct: 395 GLSSEGL 401


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 164/472 (34%), Positives = 253/472 (53%), Gaps = 34/472 (7%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYE-EAIYLFSRMLLLNIRP 106
           +++C + S   S   Q+F  VP+ +    T++I   +K H++   ++Y ++RM+L N+ P
Sbjct: 52  NLACAAGS--ISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAP 109

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           S +TF SVI S   L  L  G+ +H      G  S+V+V +A++  Y K           
Sbjct: 110 SNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGK----------- 158

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                          CG+L   R     K+F +M  R+VV+WN+MI GY Q G  +EA+ 
Sbjct: 159 ---------------CGVLCNAR-----KVFDKMRDRSVVTWNSMISGYEQNGFAKEAIR 198

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF  M   G+ PN +T    + A A++ A  +G   H  AV     L+V +G SLI+ Y 
Sbjct: 199 LFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYT 258

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           +CG++  +  VFD + ERN+V W A+I GY  NG G +A+E F  MR NG+ PN +T + 
Sbjct: 259 RCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVA 318

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           +L AC H GLV +G   F   + E   + + EH+ C+VD+L R+G   EA  F+ ++  +
Sbjct: 319 VLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEE 378

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P    W A+LG C++H N  LG   A   LA +P + + YV+LSN  ++AG+ D V  +R
Sbjct: 379 PAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVR 438

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
             M  K + +  G S I++  K ++F  GD++H   +EIY  L     + RE
Sbjct: 439 DNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCRE 490


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 152/431 (35%), Positives = 237/431 (54%), Gaps = 5/431 (1%)

Query: 92  AIYLFSRMLLLNIRPSEFTFGSVIPS---STALEDL-NLGKQLHAWATKVGLQSNVFVGS 147
           A+ L++ +L     P+  T  S++ S   S A+     L   +HA A K+GL   + V +
Sbjct: 190 ALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHAHAVKLGLAGFLLVSN 249

Query: 148 AILDLYIK-LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           A++ ++   L  + +A  +     + +  ++ T+I    +  R  DA  LF EMP RN V
Sbjct: 250 ALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAV 309

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           SW+AM+ GY Q G   EA+ LF  M  +G+ P+ + L   + A A +  L  GK  H   
Sbjct: 310 SWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYL 369

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
                ++ VF+G +L+  YAKCG M+ ++ VF  + E+N++ W  +I G A +GRG EA+
Sbjct: 370 KANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEAL 429

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386
           E F +M   G++P+ +  +G L AC HTGLV+KG   F     +     K EHY CMVDL
Sbjct: 430 ELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDL 489

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446
           L+R+G   EA+E +  +P  P    W AL+ GC+ H NVEL E+  +  + L+P+   +Y
Sbjct: 490 LARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAY 549

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           V+L N  + +G+  +   IR  M+EKG+ + PGCS +EIK  +H F+ GD +H   +EI 
Sbjct: 550 VLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEIL 609

Query: 507 AVLRSCTEQIR 517
           +       +IR
Sbjct: 610 SKWDEIDSRIR 620



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 130/277 (46%), Gaps = 46/277 (16%)

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI----IAAANIAALGMGKSFHA 264
           NA+I   + + R   A+ L+  +LR G  P   TLP  +    ++ A   A G+  + HA
Sbjct: 175 NALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSLALSPAVPGARGLALAVHA 234

Query: 265 CAVKF-------------------LGKL-------------DVFVGNSLISFYAKCGSME 292
            AVK                    LG+L             D    N+LI+ YA+ G + 
Sbjct: 235 HAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVT 294

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           D+  +FD++  RN V+W+A++ GY Q G G EA+  F RM+ +G+RP+   L+G+L AC 
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 353 HTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
             G++E+G   + Y     +     L       +VD+ ++ G  + A E ++ +  +  +
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLG----TALVDMYAKCGEMQLAME-VFKVMKEKNV 409

Query: 410 GFWKALLGGCQIH--SNVELGEFAARRILALDPEDVS 444
             W  ++ G  +H   +  L  F+    L + P+D++
Sbjct: 410 LAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIA 446



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 5/204 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           ++  + + + +    +FDE+P  N VS + ++  + +     EA+ LF+RM    +RP +
Sbjct: 284 ITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDD 343

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
                V+ +   L  L  GK +H +     ++  VF+G+A++D+Y K   ++ A  VF+ 
Sbjct: 344 TVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKV 403

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN-AMIGGY---SQTGRNEEA 224
               NV+++TTMI GL    R  +AL+LF +M    V   + A IG     + TG  ++ 
Sbjct: 404 MKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKG 463

Query: 225 VNLFIEMLRE-GLVPNHSTLPCAI 247
             LF  M+R+ G+ P      C +
Sbjct: 464 RELFDSMVRKYGIKPKIEHYGCMV 487


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 154/495 (31%), Positives = 265/495 (53%), Gaps = 43/495 (8%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF  + + +VV+   +I  + + H   +A+ +   M   N+R    T  S++ +S    +
Sbjct: 340 VFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSN 399

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE---------------- 167
           + LGK+ H +  +  L+S+V V ++I+D+Y K   I++A +VF+                
Sbjct: 400 IKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAA 459

Query: 168 -------------------DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRN 204
                              D+  PNV+S+ ++I G L+  +  +A  +F +M       N
Sbjct: 460 YAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPN 519

Query: 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHA 264
           +++W  +I G +Q+G   EA+  F +M   G+ P+ +++   ++A  +I +L  G++ H 
Sbjct: 520 LITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHG 579

Query: 265 CAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEE 324
              +    L V V  SL+  YAKCGS++++  VF  ++ + +  +NA+I  YA +G+  E
Sbjct: 580 FITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVE 639

Query: 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYAC 382
           A+  F+ ++  GI P+ +T   +L AC+H GLV +G + F  A +     + P  EHY C
Sbjct: 640 ALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLF--ADMVSKHNMNPIMEHYGC 697

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED 442
           +V LLSR G   EA   +  +PF P      +LL  C+ H  +ELGE+ ++ +  L+P +
Sbjct: 698 VVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSN 757

Query: 443 VSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMN 502
             +YV LSNA + AG+W  VSN+R  MK +G+ + PGCSWI+   K++VFV GD +H   
Sbjct: 758 SGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKT 817

Query: 503 DEIYAVLRSCTEQIR 517
           +EIYA+L     ++R
Sbjct: 818 EEIYAMLAMLLSEMR 832



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 186/359 (51%), Gaps = 39/359 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F  +   NV S   I+G   +    E+A+  F  M    + P  F   +V+ +  +L+
Sbjct: 137 RLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQ 196

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            + LGK +H +  K+G  + VFV S+++D+Y K                          C
Sbjct: 197 LIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGK--------------------------C 230

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G+L     EDA K+F  M  +NVV+WN+MI GY Q G N+EA+++F +M  EG+ P   T
Sbjct: 231 GVL-----EDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVT 285

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A+AN+ AL  GK  HA A+     LD  +G+S+I+FY+K G +ED+ LVF ++ 
Sbjct: 286 VASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRML 345

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG---LVEK 359
           E+++VTWN +I  Y Q+ +  +A+     MR   +R + VTL  +L A   T    L ++
Sbjct: 346 EKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKE 405

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           G+ Y  +  LE   ++       ++D+ ++  R  +A++ ++D   +  +  W  LL  
Sbjct: 406 GHCYCIRRNLESDVVVANS----IIDMYAKCERIDDARK-VFDSTTERDLVLWNTLLAA 459



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 166/349 (47%), Gaps = 37/349 (10%)

Query: 80  IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGL 139
           I    K  H +E+++L S M   + +     +G ++        L+ G+Q+HA   K G 
Sbjct: 51  ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNG- 109

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199
                      D + K   +E    VF                   K +  E A++LF  
Sbjct: 110 -----------DFFAKNEYVETKLVVF-----------------YAKCDFPEVAVRLFHR 141

Query: 200 MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG 259
           +  RNV SW A++G   + G +E+A+  FIEM   G+ P++  LP  + A  ++  +G+G
Sbjct: 142 LRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLG 201

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           K  H   +K      VFV +SL+  Y KCG +ED+  VFD + E+N+VTWN++I GY QN
Sbjct: 202 KGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQN 261

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWA-CNHTGLVE--KGYSYFSQAKLEDPGMLK 376
           G  +EAI+ F  MR+ GI P  VT+   L A  N   L+E  +G++      L+   +L 
Sbjct: 262 GLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILG 321

Query: 377 PEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
               + +++  S+ G  ++A E ++    +  +  W  L+     H  V
Sbjct: 322 ----SSIINFYSKVGLIEDA-ELVFSRMLEKDVVTWNLLISSYVQHHQV 365



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 174/374 (46%), Gaps = 43/374 (11%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG   D      +VFD + + NVV+  ++I  + +    +EAI +F  M +  I P+  T
Sbjct: 230 CGVLED----ARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVT 285

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             S + +S  L+ L  GKQ HA A    L  +  +GS+I++ Y K+  IE+A  VF    
Sbjct: 286 VASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVF---- 341

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                        M  ++VV+WN +I  Y Q  +  +A+N+   
Sbjct: 342 ---------------------------SRMLEKDVVTWNLLISSYVQHHQVGKALNMCHL 374

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  E L  +  TL   + A+A  + + +GK  H   ++   + DV V NS+I  YAKC  
Sbjct: 375 MRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCER 434

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           ++D+  VFD  TER++V WN ++  YAQ G   EA++ F +M+ + + PN ++   ++  
Sbjct: 435 IDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILG 494

Query: 351 CNHTGLVEKGYSYFSQAKLE--DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP---F 405
               G V +    FSQ +     P ++    +  ++  L++SG   EA  F   +     
Sbjct: 495 FLRNGQVNEAKDMFSQMQSLGFQPNLIT---WTTLISGLAQSGFGYEAILFFQKMQEAGI 551

Query: 406 DPGIGFWKALLGGC 419
            P I    ++L  C
Sbjct: 552 RPSIASITSVLLAC 565


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 253/464 (54%), Gaps = 42/464 (9%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML---LLNIRPSEFTFGS 113
           K     ++F+ +P+ NVV+ T +I    K   YE    LF RM     + + P+  T   
Sbjct: 205 KIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTV-- 262

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF------- 166
           +  + +   +   G Q+H   +++G + +VF+G+AI+ +Y + S + EA ++F       
Sbjct: 263 MFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKD 322

Query: 167 ------------------------EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
                                   E T   +V+S+TTMI G   + +   +++LF+ MP 
Sbjct: 323 VVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPK 382

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           ++ ++W A+I G+   G  EEA+  FIEMLR+ + PN  TL   + A+A +A L  G   
Sbjct: 383 QDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQI 442

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H   VK   + D+ + NSL+S Y KCG++ D   +F  +   NIV++N++I G+AQNG G
Sbjct: 443 HTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFG 502

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK---LEDPGMLKPEH 379
           EEA+E F +M   G +PN +T LG+L AC H GL+E+G++YF   K     +PG   P H
Sbjct: 503 EEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPG---PHH 559

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
           YAC+VDLL R+G   +A + +  +P +P  G W ALLG  +IH  +++ + AA++I  L+
Sbjct: 560 YACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLE 619

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           P++ + Y +LS   S AG+  +   +R     KG+ +  G SWI
Sbjct: 620 PDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWI 663



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 152/310 (49%), Gaps = 18/310 (5%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH--HYEEAIYLFSRMLLLNIRPSEFTF 111
           E+   +   ++F+++P     S   +I  + + +     EA  LF+ M   N      ++
Sbjct: 74  ENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERN----SISY 129

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            ++I        ++  ++L+   T V  +  V   +A++  Y+K+  +EEATR+FE    
Sbjct: 130 AAMITGLARAGMVDNAEELYL-ETPVEWRDPV-CSNALISGYLKVGRLEEATRIFEGMGE 187

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            +V+S+++M+ G  K+ +   A +LF+ MP RNVV+W AMI G+ + G  E    LF+ M
Sbjct: 188 RDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRM 247

Query: 232 LREGLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
            +EG V  N +TL     A +       G   H    +   + DVF+GN++I  Y +   
Sbjct: 248 RKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSF 307

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + ++  +FD +  +++V+WNA+I GY QN   EE    FE+ +   +         + W 
Sbjct: 308 VVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDV---------ISWT 358

Query: 351 CNHTGLVEKG 360
              TG   KG
Sbjct: 359 TMITGFSNKG 368



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 100/190 (52%), Gaps = 4/190 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  ++  S   K     ++F  +P  + ++ T +I  F     YEEAIY F  ML   +R
Sbjct: 358 TTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVR 417

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+  T  SV+ +S  L  LN G Q+H    K+G++ ++ + ++++ +Y K  ++ +  ++
Sbjct: 418 PNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQI 477

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRN 221
           F   ++PN+VS+ +MI G  +    E+AL+LF +M +     N +++  ++   +  G  
Sbjct: 478 FTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLL 537

Query: 222 EEAVNLFIEM 231
           E+  N F  M
Sbjct: 538 EQGWNYFKSM 547



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 14/241 (5%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           ++EA  +F    + N +S+T M+    +      A K+F++MP R   S+NAMI  Y+++
Sbjct: 47  LKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRS 106

Query: 219 GRN--EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDV 275
                 EA  LF EM RE     +S    A+I    +A  GM  +     ++  +   D 
Sbjct: 107 NPMMIGEASKLFAEM-RE----RNSISYAAMITG--LARAGMVDNAEELYLETPVEWRDP 159

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
              N+LIS Y K G +E++  +F+ + ER++++W++++ GY + G+   A E FERM   
Sbjct: 160 VCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP-- 217

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
               N VT   ++      G  E G+  F + + E    + P     M +  S  G +KE
Sbjct: 218 --ERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKE 275

Query: 396 A 396
            
Sbjct: 276 G 276



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 22/340 (6%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE--RFEDALKLF 197
             N    +A+L  Y +   I +A ++FE        SY  MI    +       +A KLF
Sbjct: 59  HKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLF 118

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
            EM  RN +S+ AMI G ++ G  + A  L++E   E   P  S    A+I+      L 
Sbjct: 119 AEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSN---ALIS----GYLK 171

Query: 258 MGKSFHACAV-KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
           +G+   A  + + +G+ DV   +S++  Y K G +  +  +F+++ ERN+VTW A+I G+
Sbjct: 172 VGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGH 231

Query: 317 AQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDP 372
            + G  E     F RMR  G ++ N  TL  +  AC+  G  ++G   +   S+   E  
Sbjct: 232 MKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFD 291

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
             L       ++ +  R     EA++ ++D+     +  W AL+ G   +  VE G    
Sbjct: 292 VFLG----NAIIIMYCRFSFVVEARK-IFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLF 346

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +      +DV S+  +    S  GK      + R M ++
Sbjct: 347 EKT---QQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ 383



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 88/197 (44%), Gaps = 15/197 (7%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           +S I+ + + G ++++  +F ++  +N ++W A++  Y +NG   +A + FE+M     +
Sbjct: 35  HSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMP----Q 90

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
               +   ++ A   +  +  G +    A++ +   +    YA M+  L+R+G    A+E
Sbjct: 91  RTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSIS---YAAMITGLARAGMVDNAEE 147

Query: 399 FLYDLPFDPGIGFWK-ALLGGCQIHSNVELG--EFAARRILALDPEDVSSYVMLSNALSV 455
              + P +     W+  +     I   +++G  E A R    +   DV S+  + +    
Sbjct: 148 LYLETPVE-----WRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCK 202

Query: 456 AGKWDNVSNIRREMKEK 472
            GK  +   +   M E+
Sbjct: 203 KGKIGHARELFERMPER 219


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 166/499 (33%), Positives = 265/499 (53%), Gaps = 34/499 (6%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
            ++       ++FD++P  N     ++I  ++      +A+ LF RM+   + P+EFT  
Sbjct: 33  DDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLP 92

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL---------------------- 150
            V+ +            +H  A K+G+ S VFV +A++                      
Sbjct: 93  FVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDK 152

Query: 151 ------------DLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
                       D+Y K  ++  A  +F+ T   NVVS+T+MI    +    E A ++F 
Sbjct: 153 TLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFD 212

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           +MP +NVVSWN+MI  Y + G+  EA++LF +M    +VP+ +TL   + A + +  L M
Sbjct: 213 QMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVM 272

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           GK  H   +   G   V + NSLI  YAKCG +  +L +F ++  +N+V+WN +I   A 
Sbjct: 273 GKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALAL 332

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378
           +G G EAI+ FE M+ +G  P+ +TL GLL AC+H+GLV+ G  YF +  +      + E
Sbjct: 333 HGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIE 392

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           HYACMVDLL R G   EA E +  +P  P +  W ALLG C+IH NVE+G+   +++L L
Sbjct: 393 HYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLEL 452

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
           +P     YV++SN    A +W++V  IR+ M ++G+ +    S IEI   ++ F+  D+ 
Sbjct: 453 EPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKR 512

Query: 499 HHMNDEIYAVLRSCTEQIR 517
           H ++  IYA+L   T+ +R
Sbjct: 513 HKISSSIYAMLDQLTDHLR 531



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 178/439 (40%), Gaps = 95/439 (21%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  +S  ++        Q+FD++P  NVVS  ++I  + ++  Y EA+ LF++M    + 
Sbjct: 192 TSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV 251

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P E T  S++ + + L DL +GK++H +         V + ++++D+Y K   +  A  +
Sbjct: 252 PDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDI 311

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
           F +    N+VS+  +I                               G  +  G   EA+
Sbjct: 312 FLEMPGKNLVSWNVII-------------------------------GALALHGCGLEAI 340

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285
            LF EM  +G +P+  TL                                     L+S  
Sbjct: 341 KLFEEMQADGTLPDEITL-----------------------------------TGLLSAC 365

Query: 286 AKCGSMEDSLLVFDKL-----TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           +  G ++  L  FD++       R I  +  ++    + G   EAIE   RM    ++P+
Sbjct: 366 SHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMP---MKPD 422

Query: 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH---YACMVDLLSRSGRFKEAK 397
            V    LL AC   G VE G     Q  LE    L+P     Y  + ++   + R+++ K
Sbjct: 423 VVVWGALLGACRIHGNVEIGKQILKQL-LE----LEPHSGGLYVLISNIYWEAQRWEDVK 477

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS--YVM---LSNA 452
           + +  L  D GI   +A+       S++E+       ++      +SS  Y M   L++ 
Sbjct: 478 K-IRKLMIDRGIKKGRAI-------SSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDH 529

Query: 453 LSVAGKWDNVSNIRREMKE 471
           L  AG   N+S++  E +E
Sbjct: 530 LRSAGYLCNISSVFFEAEE 548



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 281 LISFYA--KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           LISF A    G ++ +  +FD++ + N   +N++I GY+ +    +A+  F RM  +G+ 
Sbjct: 26  LISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLS 85

Query: 339 PNGVTLLGLLWAC 351
           PN  TL  +L AC
Sbjct: 86  PNEFTLPFVLKAC 98


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/446 (35%), Positives = 238/446 (53%), Gaps = 31/446 (6%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F+++   +VVS TTII    +    E A+  F RM   ++ P+E+TF +VI     L  
Sbjct: 274 LFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLAR 333

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           +  G+QLHA    +GL +++ V ++I+ +Y K                          CG
Sbjct: 334 IEWGEQLHALILHLGLAASLSVENSIMTMYAK--------------------------CG 367

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            L          +F EM  R++VSW+ +I GY Q G   EA  L   M  EG  P    L
Sbjct: 368 QLTSSSV-----IFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFAL 422

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A  N+A L  GK  HA  +    +    V ++LI+ Y KCGS+E++  +FD    
Sbjct: 423 ASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEN 482

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
            +IV+W A+I GYA++G   E I+ FE++   G+RP+ VT +G+L AC+H GLV+ G+ Y
Sbjct: 483 DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHY 542

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           F+    +       EHY CM+DLL R+GR  +A+  +  +PF      W  LL  C++H 
Sbjct: 543 FNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHG 602

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           +VE G   A RIL L+P    +++ L+N  +  GKW   ++IR+ MK KG+ + PG SWI
Sbjct: 603 DVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWI 662

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVL 509
           ++K  V  FV GDR+H   ++IY +L
Sbjct: 663 KVKDLVFAFVAGDRSHPQGEDIYNML 688



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 189/405 (46%), Gaps = 46/405 (11%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VF E+P  NVVS T II    +  + +EA+  FS M    +    +TF   + +     
Sbjct: 172 RVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSG 231

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            LN G+++HA A K G   + FV + +  +Y K                          C
Sbjct: 232 ALNYGREIHAQAMKKGFDVSSFVANTLATMYNK--------------------------C 265

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G     + E  L LF++M  R+VVSW  +I    Q G+ E AV  FI M    + PN  T
Sbjct: 266 G-----KLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYT 320

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               I   AN+A +  G+  HA  +       + V NS+++ YAKCG +  S ++F ++T
Sbjct: 321 FAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMT 380

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-- 360
            R+IV+W+ +I GY Q G   EA E    MR+ G +P    L  +L AC +  ++E G  
Sbjct: 381 RRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQ 440

Query: 361 -YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
            ++Y     LE   M+     + ++++  + G  +EA   ++D   +  I  W A++ G 
Sbjct: 441 LHAYVLSIGLEHTAMV----LSALINMYCKCGSIEEASR-IFDAAENDDIVSWTAMINGY 495

Query: 420 QIHSN----VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
             H      ++L E   R  + L P+ V +++ + +A S AG  D
Sbjct: 496 AEHGYSREVIDLFEKIPR--VGLRPDSV-TFIGVLSACSHAGLVD 537



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 138/303 (45%), Gaps = 45/303 (14%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           +I T    CG    + +S   +F E+   ++VS +TII  + +  H  EA  L S M + 
Sbjct: 358 SIMTMYAKCG----QLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRME 413

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
             +P+EF   SV+ +   +  L  GKQLHA+   +GL+    V SA++++Y K  SIEEA
Sbjct: 414 GPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEA 473

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
           +R+F+   N ++                               VSW AMI GY++ G + 
Sbjct: 474 SRIFDAAENDDI-------------------------------VSWTAMINGYAEHGYSR 502

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG-KSFHACAVKFLGKLDVFVGNSL 281
           E ++LF ++ R GL P+  T    + A ++   + +G   F+A + K+           +
Sbjct: 503 EVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCM 562

Query: 282 ISFYAKCGSMEDSLLVFDKLT-ERNIVTWNAVICGYAQNG---RGEEAIEFFERMRINGI 337
           I    + G + D+  + + +   R+ V W+ ++     +G   RG    E     RI  +
Sbjct: 563 IDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAE-----RILQL 617

Query: 338 RPN 340
            PN
Sbjct: 618 EPN 620



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 1/185 (0%)

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNHST 242
           L+K     +A ++F +M  ++ +SW  +I GY     + EA+ LF  M +  GL  +   
Sbjct: 59  LVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFI 118

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L  A  A    + +  G+  H  AVK      VFVG++L+  Y K G + +   VF ++ 
Sbjct: 119 LSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMP 178

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            RN+V+W A+I G  + G  +EA+ +F  M  + +  +  T    L AC  +G +  G  
Sbjct: 179 MRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGRE 238

Query: 363 YFSQA 367
             +QA
Sbjct: 239 IHAQA 243



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           + F+ + D+   N  +    K G + ++  +FDK+++++ ++W  +I GY       EA+
Sbjct: 41  IHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEAL 100

Query: 327 EFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYAC 382
             F+ MR+ +G+R +   L     AC     V  G   + Y  +  L +   +     + 
Sbjct: 101 LLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVG----SA 156

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           ++D+ +++G+  E +   +++P    +  W A++ G
Sbjct: 157 LLDMYTKNGKIFEGRRVFHEMPMRNVVS-WTAIITG 191


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 176/553 (31%), Positives = 277/553 (50%), Gaps = 55/553 (9%)

Query: 6   CICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVS--CGSESDKFSSVHQ 63
           C   S +SL  L K  S+     I +    +     P  R   ++  C  ES   +  HQ
Sbjct: 5   CFGESPISL--LEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQ 62

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  ++    T+I  ++K  H E  + ++  ML  NI+P  FTF   +   T    
Sbjct: 63  VFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMA 122

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK+L   A K G  SN+FV  A + ++     ++ A +VF+      VV++  M+ G
Sbjct: 123 LQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSG 182

Query: 184 LLKRERF-------------------------------------------EDALKLFQEM 200
             + ++F                                           ++A  +F  M
Sbjct: 183 YNRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNM 242

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
             R+VVSW AMI GY +      A+ LF EM    + P+  T+   +IA A + AL +G+
Sbjct: 243 KTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGE 302

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
               C  K   K D FVGN+L+  Y KCG++  +  VF ++ +++  TW  +I G A NG
Sbjct: 303 WVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAING 362

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE-- 378
            GEEA+  F  M    + P+ +T +G+L AC    +V+KG S+F+   ++    +KP   
Sbjct: 363 HGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHG--IKPTVT 416

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438
           HY CMVDLL   G  +EA E + ++P  P    W + LG C++H NV+L + AA++IL L
Sbjct: 417 HYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILEL 476

Query: 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498
           +PE+ + YV+L N  + + KW+N+  +R+ M E+G+ + PGCS +E+   V+ FV GD++
Sbjct: 477 EPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQS 536

Query: 499 HHMNDEIYAVLRS 511
           H  + EIYA L +
Sbjct: 537 HPQSKEIYAKLEN 549


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 247/467 (52%), Gaps = 35/467 (7%)

Query: 43  AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102
           A+ T    CG  S    S  QVFDE+ + NV++ T II    +   Y +++ LF  M   
Sbjct: 99  ALITSYFKCGFSS----SGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNG 154

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P+  T+ S + + + L+ L  G Q+H    K+GLQS+  V SA++D+Y K  S+ + 
Sbjct: 155 LVEPNSLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDT 214

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
            ++FE     + VS T +                               + G++Q G  E
Sbjct: 215 LQIFESAGQLDKVSMTII-------------------------------LAGFAQNGFEE 243

Query: 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           EA+  F++ML  G   + + +   +       +LG+G+  H+  +K     + FVGN LI
Sbjct: 244 EAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLI 303

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
           + Y+KCG +EDS  VF ++   N V+WN++I  +A++G G  A++ ++ MR+ G+ P  V
Sbjct: 304 NMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDV 363

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T L LL AC+H GLVEKG  +            + EHYAC+VD+L R+G   EAK F+  
Sbjct: 364 TFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEG 423

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           LP  P +  W+ALLG C IH + E+G++AA  ++   PE  S Y++L+N  S  G+W   
Sbjct: 424 LPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRWKER 483

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           +   + MKE  + +  G SWIEI++ +H FV  D+ H   + IY VL
Sbjct: 484 AKTIKRMKEMCVAKETGISWIEIENNLHSFVVEDKMHPQAEIIYGVL 530



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 187/415 (45%), Gaps = 43/415 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTFGSVIPSSTAL 121
           ++FDE+P  + VS   +I  F K   ++     F +M  L   R  + T  +++ +    
Sbjct: 13  KLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQATLTTILSACDRP 72

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           E   + K +H  A   G Q  + VG+A++  Y K                          
Sbjct: 73  ELGFVNKMVHCLAVLNGFQREISVGNALITSYFK-------------------------- 106

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG          +++F EM  RNV++W A+I G  Q+    +++ LF+EM    + PN  
Sbjct: 107 CGF-----SSSGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSL 161

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T   +++A + + AL  G   H    K   + D  V ++L+  Y+KCGSM D+L +F+  
Sbjct: 162 TYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESA 221

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRING--IRPNGVT-LLGLLWACNHTGLVE 358
            + + V+   ++ G+AQNG  EEA++FF +M   G  I  N V+ +LG+  A    GL +
Sbjct: 222 GQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQ 281

Query: 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           + +S   +          P     ++++ S+ G  +++ +    +P    +  W +++  
Sbjct: 282 QIHSLVIKRSFGS----NPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVS-WNSMIAA 336

Query: 419 CQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471
              H +    L  +   R+  ++P DV +++ L +A S  G  +      + M E
Sbjct: 337 FARHGDGSRALQLYKEMRLKGVEPTDV-TFLSLLHACSHVGLVEKGMEFLKSMTE 390



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
           DA KLF EMP R+ VSWN MI G+ + G  +     F +M   G           I++A 
Sbjct: 10  DAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQATLTTILSAC 69

Query: 252 NIAALG-MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           +   LG + K  H  AV    + ++ VGN+LI+ Y KCG     + VFD++ ERN++TW 
Sbjct: 70  DRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNVITWT 129

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           A+I G  Q+    +++  F  M    + PN +T L  L AC+    + +G
Sbjct: 130 AIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREG 179



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI-RPNGVT 343
           YAK G + D+  +FD++  R+ V+WN +I G+ ++G  +    FF++M+  G  R +  T
Sbjct: 2   YAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQAT 61

Query: 344 LLGLLWACNHT--GLVEK 359
           L  +L AC+    G V K
Sbjct: 62  LTTILSACDRPELGFVNK 79


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/413 (37%), Positives = 246/413 (59%), Gaps = 2/413 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTAL 121
           +VFDE+P+ +VVS TT++  +A+    +EA  LF RM+++  +RP+  T  + + +   +
Sbjct: 199 KVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQM 258

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L  G  LH + T+ G+  +V + +A++D++ K   +  A  VF+     +V S+T+M+
Sbjct: 259 GLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMV 318

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               K    E A +LF++MP RNVVSW+ MI  YSQ  + EEAV LF EM+  G+ P  +
Sbjct: 319 NAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDA 378

Query: 242 TLPCAIIAAANIAALGMGK-SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           TL   + A A +  L +G+  +    V     L V +GN+LI  +AKCG + ++  +FD+
Sbjct: 379 TLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDE 438

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ERN+V+WN +I  +A +G+ EEAI  FE+++   I P+ +T LGLL +C+H+GLV +G
Sbjct: 439 MAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEG 498

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             YF + ++      + EHYACM+DLL + G  +EA E    +P +     W ALL  C+
Sbjct: 499 RRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACR 558

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473
           +H NVE+G   A +++ LDP D   YV++S   +   KWD V  +R  M+++G
Sbjct: 559 MHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRG 611



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 121/269 (44%), Gaps = 33/269 (12%)

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNHSTLPCAII 248
            +DA K+F EMP R+VVSW  ++ GY++ G  +EA  LF  M +  G+ PN  TL  A+ 
Sbjct: 194 LDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVS 253

Query: 249 AAANIAALGMGKSFHA---------------CAVKFLGKL----------------DVFV 277
           A   +  L  G   H                  V   GK                 DV+ 
Sbjct: 254 AIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYS 313

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
             S+++ YAKCG +E +  +F  +  RN+V+W+ +I  Y+Q  + EEA+  F  M   G+
Sbjct: 314 WTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGV 373

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            P   TL+ +L AC   G ++ G   +    + +   L       ++D+ ++ G   EA 
Sbjct: 374 DPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEAS 433

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           + L+D   +  +  W  ++    +H   E
Sbjct: 434 K-LFDEMAERNVVSWNTMIMAHAVHGQSE 461



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 106/193 (54%), Gaps = 9/193 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  V+  ++     S  Q+F ++P  NVVS + +I  +++ +  EEA++LF  M+   + 
Sbjct: 315 TSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVD 374

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHA---WATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           P + T  SV+ +   L  L+LG+ ++     + K+GL  N  +G+A++D++ K   + EA
Sbjct: 375 PIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVN--LGNALIDMFAKCGDVGEA 432

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQT 218
           +++F++    NVVS+ TMI       + E+A++LF+++   N+V    ++  ++   S +
Sbjct: 433 SKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHS 492

Query: 219 GRNEEAVNLFIEM 231
           G   E    F EM
Sbjct: 493 GLVSEGRRYFKEM 505



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 17/210 (8%)

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI------IAAANIA 254
           P  N      M+ G+ +      A+ LF  ++R+ L  +  T   A+        + +  
Sbjct: 97  PGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGG 156

Query: 255 ALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312
               G++ H  A+K  F+G+  V VGN+L+ FYA   S++D+  VFD++ ER++V+W  +
Sbjct: 157 TPSGGEAIHCAALKCGFVGE-SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTL 215

Query: 313 ICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAK 368
           + GYA+ G  +EA   F RM  + G+RPN VTL+  + A    GL+  G   + Y ++  
Sbjct: 216 VDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGG 275

Query: 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           +     L       +VD+  + G  + A+E
Sbjct: 276 VARSVNLD----NALVDMFGKCGCVRYARE 301


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 153/447 (34%), Positives = 243/447 (54%), Gaps = 31/447 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F+ +   +VVS TTII    +    E A+  F RM   ++ P+EFTF +VI     L 
Sbjct: 225 RLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLG 284

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +  G+QLHA   + GL  ++ V ++I+ +Y K   ++ A+ VF+     +++S++T   
Sbjct: 285 RIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWST--- 341

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                       MI GY+Q G  EEA +    M REG  PN   
Sbjct: 342 ----------------------------MISGYAQGGCGEEAFDYLSWMRREGPRPNEFA 373

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +    N+A L  GK  HA  +    + +  V ++LI+ Y+KCGS++++  +FD+  
Sbjct: 374 FASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAE 433

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
             NIV+W A+I GYA++G  +EAI+ F+++   G+RP+ VT + +L AC+H GLV+ G+ 
Sbjct: 434 YNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFH 493

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
           YF+            +HY CM+DLL R+GR  +A+  +  +PF      W  LL  C+IH
Sbjct: 494 YFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIH 553

Query: 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSW 482
            +V+ G+ AA +IL LDP    +++ L+N  +  GKW   + +R+ MK KG+ + PG SW
Sbjct: 554 GDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSW 613

Query: 483 IEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           I+ K +V  FV+GDR+H   + IY VL
Sbjct: 614 IKFKDRVSAFVSGDRSHPEGEYIYDVL 640



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 191/403 (47%), Gaps = 50/403 (12%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF E+P  NVVS T II    +  + +EA+  FS M +  +    +TF S + +      
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGA 184

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           LN G+++H    K G  +  FV + +  +Y K   ++   R+FE     +VVS+TT+I  
Sbjct: 185 LNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMS 244

Query: 184 LLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
            ++  + E+A+K F+ M   +V     ++ A+I G +  GR E    L   ++R GLV +
Sbjct: 245 NVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDS 304

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            S                                   V NS+++ Y+KC  ++ +  VF 
Sbjct: 305 LS-----------------------------------VANSIMAMYSKCWQLDLASTVFQ 329

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
            L+ R+I++W+ +I GYAQ G GEEA ++   MR  G RPN      +L  C +  ++E+
Sbjct: 330 GLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQ 389

Query: 360 G---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G   +++     LE   M++    + ++++ S+ G  KEA +   +  ++  I  W A++
Sbjct: 390 GKQLHAHVLCVGLEQNTMVQ----SALINMYSKCGSIKEASKIFDEAEYN-NIVSWTAMI 444

Query: 417 GGCQIH--SNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457
            G   H  S   +  F     + L P+ V+   +L+ A S AG
Sbjct: 445 NGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLA-ACSHAG 486



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 1/178 (0%)

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHST 242
           L+K     +A +LF +M  R+ +SW  +I GY       EA++LF +M  E GL  +   
Sbjct: 11  LVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFI 70

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           L  A+ A     ++  G+S H  +VK      VFVG++L+  Y K G +++  +VF ++ 
Sbjct: 71  LSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMP 130

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
            RN+V+W A+I G  + G  +EA+ +F  M I  +  +  T    L AC  +G +  G
Sbjct: 131 LRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYG 188



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 35/163 (21%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS         ++FDE    N+VS T +I  +A+  + +EAI LF ++  + +RP   T
Sbjct: 419 CGS----IKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVT 474

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F +V+ + +           HA    +G              +  LS + +         
Sbjct: 475 FIAVLAACS-----------HAGLVDLGFH-----------YFNSLSKVHQIC------- 505

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMP-HRNVVSWNAMI 212
            P+   Y  MI  L +  R  DA  + Q MP  R+ V W+ ++
Sbjct: 506 -PSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLL 547



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 9/144 (6%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GI 337
           N ++    K G + ++  +FDK+ +R+ ++W  +I GY       EA+  F +M +  G+
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYS---YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
             +   L   L AC     V  G S   Y  +    +   +     + +VD+  + G+  
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVG----SALVDMYMKIGKVD 120

Query: 395 EAKEFLYDLPFDPGIGFWKALLGG 418
           E      ++P    +  W A++ G
Sbjct: 121 EGCIVFKEMPLRNVVS-WTAIIAG 143


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 171/517 (33%), Positives = 271/517 (52%), Gaps = 42/517 (8%)

Query: 10  SSLSLNKLSKLHSLAPNYLIETQK--ASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDE 67
           S+L  N++  L S  P  L +     +S+   +  +  T   + G      +S   +FD 
Sbjct: 59  STLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARALFDR 118

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP------SEFTFGSVIPSSTAL 121
           +P  +  S + I+   A+      A+ ++ RML     P      +EFT  S + ++TA 
Sbjct: 119 MPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLR---EPGSAGVDNEFTASSALAAATAA 175

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
                G++LH    + G+ ++  V SA+ D+Y K                          
Sbjct: 176 RCARAGRELHCHVVRRGIDADAVVWSALADMYAK-------------------------- 209

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG     R +DA  +F  MP R+VVSW AM+  Y    R+ E   LF+ MLR G+ PN  
Sbjct: 210 CG-----RVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEF 264

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A A   +  +GK  H    K       F  ++L+  Y+K G M  ++ VF  +
Sbjct: 265 TYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGM 324

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
            + ++V+W A+I GYAQNG+ +EA+ +F+ +  +G RP+ VT +G+L AC H GLV+KG 
Sbjct: 325 PKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGL 384

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           S F   K E       +HYAC++DLLSRSG F+ A+E +  +   P    W +LLGGC+I
Sbjct: 385 SIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRI 444

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NV L  +AA  +  ++PE+ ++YV L+N  +  G +D V N RR M+ KG+T++P  S
Sbjct: 445 HKNVRLARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASS 504

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           WIE+ +++HVF+ GD+ H   +++YA+L+    ++RE
Sbjct: 505 WIEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMRE 541


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 254/470 (54%), Gaps = 41/470 (8%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CGS     S    +FD +    VVS  ++I  + +    E A+ +F +ML   ++P+  T
Sbjct: 179 CGS----VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVT 234

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
               + +   L DL  GK +H    ++ L S+V V ++++ +Y K   ++ A  +F++  
Sbjct: 235 VMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR 294

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           N                               + +VSWNAMI GY+Q G   EA+N F E
Sbjct: 295 N-------------------------------KTLVSWNAMILGYAQNGCVNEALNAFCE 323

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M    + P+  T+   I A A ++     K  H   ++     +VFV  +L+  YAKCG+
Sbjct: 324 MQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGA 383

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  +FD +  R+++TWNA+I GY  +G G+ ++E F+ M+   I+PN +T L  L A
Sbjct: 384 IHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSA 443

Query: 351 CNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C+H+GLVE+G  +F   K +   +P M   +HY  MVDLL R+GR  +A +F+  +P  P
Sbjct: 444 CSHSGLVEEGLCFFESMKKDYGIEPTM---DHYGAMVDLLGRAGRLNQAWDFIQKMPIKP 500

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
           GI  + A+LG C+IH NV+LGE AA  I  L+P+D   +V+L+N  + A  W  V+ +R 
Sbjct: 501 GITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRT 560

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            M++ G+ + PGCS +EI ++VH F +G  +H  + +IY+ L +  ++IR
Sbjct: 561 IMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIR 610



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 141/291 (48%), Gaps = 34/291 (11%)

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142
           +AK    + A+  FSRM   ++RP  + F  ++       DL  GK++H      G   N
Sbjct: 5   YAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWN 64

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
           +F  + ++++Y K   I                                DA  +F  MP 
Sbjct: 65  LFAMTGVVNMYAKCRQIN-------------------------------DAYNMFDRMPE 93

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           R++V WN MI GY+Q G  + A+ L + M  EG  P+  T+   + A A+   L +G + 
Sbjct: 94  RDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAV 153

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H   ++   +  V V  +L+  Y+KCGS+  + ++FD +  R +V+WN++I GY Q+G  
Sbjct: 154 HGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDA 213

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLE 370
           E A+  F++M   G++P  VT++G L AC   G +E+G   +    Q KL+
Sbjct: 214 EGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLD 264



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 112/239 (46%), Gaps = 10/239 (4%)

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           M+ GY+++   + A++ F  M  + + P        +    + + L  GK  H   +   
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330
              ++F    +++ YAKC  + D+  +FD++ ER++V WN +I GYAQNG  + A+    
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 331 RMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLL 387
           RM   G RP+ +T++ +L A   T L+  G   + Y  +A  E    +       +VD+ 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVS----TALVDMY 176

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL--ALDPEDVS 444
           S+ G    A+  ++D      +  W +++ G     + E      +++L   + P +V+
Sbjct: 177 SKCGSVSIAR-VIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVT 234



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 5/195 (2%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+  +      +F  + +  +VS   +I  +A+     EA+  F  M   NI+P  
Sbjct: 274 ISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDS 333

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
           FT  SVIP+   L      K +H    +  L  NVFV +A++D+Y K  +I  A ++F+ 
Sbjct: 334 FTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDM 393

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEA 224
            +  +V+++  MI G       + +++LF+EM       N +++   +   S +G  EE 
Sbjct: 394 MNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEG 453

Query: 225 VNLFIEMLRE-GLVP 238
           +  F  M ++ G+ P
Sbjct: 454 LCFFESMKKDYGIEP 468


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 260/454 (57%), Gaps = 4/454 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD     +V S   +I  + +   YEE+I L   M    + P+  T   V+ + + ++D
Sbjct: 192 VFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD 251

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +L K++H + ++   + ++ + +A+++ Y     ++ A R+F      +V+S+T+++ G
Sbjct: 252 KDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKG 311

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            ++R   + A   F +MP R+ +SW  MI GY + G   E++ +F EM   G++P+  T+
Sbjct: 312 YVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTM 371

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A++ +L +G+       K   K DV VGN+LI  Y KCG  E +  VF  + +
Sbjct: 372 VSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQ 431

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+  TW A++ G A NG+G+EAI+ F +M+   I+P+ +T LG+L ACNH+G+V++   +
Sbjct: 432 RDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKF 491

Query: 364 FSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F  AK+     ++P   HY CMVD+L R+G  KEA E L  +P +P    W ALLG  ++
Sbjct: 492 F--AKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRL 549

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H++  + E AA++IL L+P++ + Y +L N  +   +W ++  +RR++ +  + + PG S
Sbjct: 550 HNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFS 609

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
            IE+    H FV GD++H  ++EIY  L    ++
Sbjct: 610 LIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 146/293 (49%), Gaps = 26/293 (8%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AA 251
           A KLF ++P  +VV WN MI G+S+   + E V L++ ML+EG+ P+  T P  +     
Sbjct: 87  AYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKR 146

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +  AL  GK  H   VKF    +++V N+L+  Y+ CG M+ +  VFD+  + ++ +WN 
Sbjct: 147 DGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNL 206

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT---GLVEKGYSYFSQAK 368
           +I GY +    EE+IE    M  N + P  VTLL +L AC+      L ++ + Y S+ K
Sbjct: 207 MISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECK 266

Query: 369 LEDPGM-----LKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            E P +     L   + AC  +D+  R  R  +A++ +           W +++ G    
Sbjct: 267 TE-PSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS----------WTSIVKGYVER 315

Query: 423 SNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
            N++L    AR      P  D  S+ ++ +    AG ++    I REM+  GM
Sbjct: 316 GNLKL----ARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/507 (20%), Positives = 220/507 (43%), Gaps = 86/507 (16%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I +L +C+++   ++  +LHS +    +       +KL           C       S  
Sbjct: 38  ISILGVCKTT---DQFKQLHSQSITRGVAPNPTFQKKLFV-------FWCSRLGGHVSYA 87

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STA 120
           +++F ++P+ +VV    +I  ++K     E + L+  ML   + P   TF  ++      
Sbjct: 88  YKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRD 147

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
              L  GK+LH    K GL SN++V +A++ +Y     ++ A  VF+     +V S+  M
Sbjct: 148 GGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLM 207

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G  + + +E++++L  EM  RN+VS                              P  
Sbjct: 208 ISGYNRMKEYEESIELLVEM-ERNLVS------------------------------PTS 236

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL   + A + +    + K  H    +   +  + + N+L++ YA CG M+ ++ +F  
Sbjct: 237 VTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRS 296

Query: 301 LTERNIVTWNAVICGYAQNGRGE-------------------------------EAIEFF 329
           +  R++++W +++ GY + G  +                               E++E F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDL 386
             M+  G+ P+  T++ +L AC H G +E G    +Y  + K+++  ++       ++D+
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG----NALIDM 412

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGF-WKALLGGCQIHSNVE--LGEFAARRILALDPEDV 443
             + G  ++A++  +D+  D    F W A++ G   +   +  +  F   + +++ P+D+
Sbjct: 413 YFKCGCSEKAQKVFHDM--DQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDI 470

Query: 444 SSYVMLSNALSVAGKWDNVSNIRREMK 470
            +Y+ + +A + +G  D       +M+
Sbjct: 471 -TYLGVLSACNHSGMVDQARKFFAKMR 496


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 161/462 (34%), Positives = 263/462 (56%), Gaps = 40/462 (8%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR-PSEFTFGSVIPSSTA 120
            ++FDE+P+ ++VS  +++   + + +    +  F RM   + R P+E T  SV+ +   
Sbjct: 174 QRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAD 233

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           +  L+ GK LH    K+G+     V ++++++Y KL  ++ A+                 
Sbjct: 234 MGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAAS----------------- 276

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                         +LF+EMP R++VSWN+M+  ++  G  E+ ++LF  M R G+ P+ 
Sbjct: 277 --------------QLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQ 322

Query: 241 STLPCAIIAAANIAALG-MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           +T+  A++ A     LG   +S HA   +     D+ +  +L++ YAK G +  S  +F+
Sbjct: 323 ATM-VALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFE 381

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ +R+ + W A++ GYA +  G EAI+ F+ M   G+  + VT   LL AC+H+GLVE+
Sbjct: 382 EIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEE 441

Query: 360 GYSYF---SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
           G  YF   S+    +P +   +HY+CMVDLL RSGR ++A E +  +P +P  G W ALL
Sbjct: 442 GKKYFEIMSEVYRVEPRL---DHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALL 498

Query: 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476
           G C+++ NVELG+  A ++L+LDP D  +Y+MLSN  S AG W + S +R  MKE+ +TR
Sbjct: 499 GACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTR 558

Query: 477 VPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            PGCS+IE  +K+H FV GD+ H  +DEI+  L     +IRE
Sbjct: 559 NPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIRE 600



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 9/237 (3%)

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPNHSTLPCAIIA 249
           EDA +LF EMP++++VSWN+++ G S  G     +N F  M  E G  PN  TL   + A
Sbjct: 171 EDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSA 230

Query: 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW 309
            A++ AL  GKS H   VK        V NSLI+ Y K G ++ +  +F+++  R++V+W
Sbjct: 231 CADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSW 290

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL---VEKGYSYFSQ 366
           N+++  +  NG  E+ ++ F  M+  GI P+  T++ LL AC  TGL    E  ++Y  +
Sbjct: 291 NSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR 350

Query: 367 AKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
                  ++       +++L ++ GR   +++   ++     I  W A+L G  +H+
Sbjct: 351 CGFNADIIIA----TALLNLYAKLGRLNASEDIFEEIKDRDRIA-WTAMLAGYAVHA 402



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 4/167 (2%)

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
           +S +   + A ++  ++    + HA  +K L   D F+G+ L+S Y K G  ED+  +FD
Sbjct: 119 YSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFD 178

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVE 358
           ++  +++V+WN+++ G +  G     +  F RMR  +G +PN VTLL ++ AC   G ++
Sbjct: 179 EMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 238

Query: 359 KGYSYFS-QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +G S      KL   G  K +    ++++  + G    A +   ++P
Sbjct: 239 EGKSLHGVVVKLGMSG--KAKVVNSLINMYGKLGFLDAASQLFEEMP 283


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 248/475 (52%), Gaps = 31/475 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T  +   S+  K      +F      ++ S   ++  F    +Y EA+ LFS M    
Sbjct: 436 VSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERG 495

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            +  + TF +   ++  L  L  GKQ+HA   K+    ++FV S ILD+Y+K        
Sbjct: 496 EKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLK-------- 547

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                             CG +K  R     K+F ++P  + V+W  +I G  + G  E+
Sbjct: 548 ------------------CGEMKSAR-----KVFNQIPSPDDVAWTTVISGCVENGEEEQ 584

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A+  + +M   G+ P+  T    + A + + AL  GK  HA  +K     D FV  SL+ 
Sbjct: 585 ALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVD 644

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCG++ED+  +F ++  R++  WNA+I G AQ+G  EEA+ FF  M+  G+ P+ VT
Sbjct: 645 MYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVT 704

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            +G+L AC+H+GL    Y  F   +       + EHY+C+VD LSR+G  +EA++ +  +
Sbjct: 705 FIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSM 764

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
           PF+     ++ LL  C++  + E GE  A ++  +DP D ++YV+LSN  + A +W+N  
Sbjct: 765 PFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAV 824

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + R  MK   + + PG SWI++K+KVH+FV GDR+H   D IY  +    ++I+E
Sbjct: 825 SARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKE 879



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 184/391 (47%), Gaps = 36/391 (9%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++F ++ +++++S  T+I   A+    E ++ LF  +L   + P +FT  SV+ + ++LE
Sbjct: 353 RMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLE 412

Query: 123 D-LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
           +   +G+Q+H  A K G+  + FV +A++D+Y K   +EEA  +F +    ++ S+  M+
Sbjct: 413 ESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMM 472

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
            G    + + +AL+LF  M  R                               G   +  
Sbjct: 473 HGFTVSDNYREALRLFSLMHER-------------------------------GEKADQI 501

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T   A  AA  +  L  GK  HA  +K     D+FV + ++  Y KCG M+ +  VF+++
Sbjct: 502 TFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQI 561

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
              + V W  VI G  +NG  E+A+  + +MR+ G++P+  T   L+ AC+    +E+G 
Sbjct: 562 PSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGK 621

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
              +   ++      P     +VD+ ++ G  ++A   L+       +  W A++ G   
Sbjct: 622 QIHANI-MKLNCAFDPFVMTSLVDMYAKCGNIEDAYG-LFRRMNTRSVALWNAMIVGLAQ 679

Query: 422 HSNVE--LGEFAARRILALDPEDVSSYVMLS 450
           H N E  L  F   +   + P+ V+   +LS
Sbjct: 680 HGNAEEALNFFNEMKSRGVTPDRVTFIGVLS 710



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 200/464 (43%), Gaps = 70/464 (15%)

Query: 51  CGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQ---HHYE---EAIYLFSRMLLL 102
           CGS      S  ++FD  P  D ++V+   I+  +A     H  E   EA ++F  +   
Sbjct: 61  CGS----LFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQS 116

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            +  +  T   +          +  + L  +A K+GLQ +VFV  A++++Y K   I EA
Sbjct: 117 VMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREA 176

Query: 163 TRVFEDTH-----------------------------------NPNVVSYTTMICGLLKR 187
             +F+                                       P+ VS  T++ G+ K+
Sbjct: 177 RVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKK 236

Query: 188 ERFED--------ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
             FE         A KLF      +V  WN  +  Y Q G   EAV+ F +M++  +  +
Sbjct: 237 TVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCD 296

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
             T    +   A++  L +GK  H   V+F     V V NS I+ Y K GS+  +  +F 
Sbjct: 297 SLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFG 356

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++ E ++++WN VI G A++G  E ++  F  +  +G+ P+  T+  +L AC+    +E+
Sbjct: 357 QMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSS---LEE 413

Query: 360 GYSYFSQA---KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKAL 415
            Y    Q     L+   +L       ++D+ S+ G+ +EA+   ++   FD  +  W A+
Sbjct: 414 SYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFD--LASWNAM 471

Query: 416 LGGCQIHSNVELGEFAARRILALDPE--DVSSYVMLSNALSVAG 457
           + G  +  N       A R+ +L  E  + +  +  +NA   AG
Sbjct: 472 MHGFTVSDNYR----EALRLFSLMHERGEKADQITFANAAKAAG 511



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 122/259 (47%), Gaps = 47/259 (18%)

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++  + A  DL LGK+ HA     GL  + +V + ++ +Y K  S+  A ++F+ T   
Sbjct: 18  SILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQS 77

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG------RNEEAVN 226
           +                             R++V++NA++  Y+ TG      +  EA +
Sbjct: 78  D-----------------------------RDLVTYNAILAAYAHTGELHDVEKTHEAFH 108

Query: 227 LFIEMLREG--LVPNHSTLP----CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280
           +F  +LR+   L   H+  P    C +  + + +     ++    AVK   + DVFV  +
Sbjct: 109 IF-RLLRQSVMLTTRHTLSPLFKLCLLYGSPSAS-----EALQGYAVKIGLQWDVFVAGA 162

Query: 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340
           L++ YAK   + ++ ++FD++  R++V WN ++  Y + G G+E +  F     +G+RP+
Sbjct: 163 LVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPD 222

Query: 341 GVTLLGLLWACNHTGLVEK 359
            V++  +L       + E+
Sbjct: 223 CVSVRTILMGVGKKTVFER 241


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 253/464 (54%), Gaps = 42/464 (9%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML---LLNIRPSEFTFGS 113
           K     ++F+ +P+ NVV+ T +I    K   YE    LF RM     + + P+  T   
Sbjct: 284 KIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTV-- 341

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF------- 166
           +  + +   +   G Q+H   +++G + +VF+G+AI+ +Y + S + EA ++F       
Sbjct: 342 MFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKD 401

Query: 167 ------------------------EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
                                   E T   +V+S+TTMI G   + +   +++LF+ MP 
Sbjct: 402 VVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPK 461

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           ++ ++W A+I G+   G  EEA+  FIEMLR+ + PN  TL   + A+A +A L  G   
Sbjct: 462 QDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQI 521

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H   VK   + D+ + NSL+S Y KCG++ D   +F  +   NIV++N++I G+AQNG G
Sbjct: 522 HTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFG 581

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK---LEDPGMLKPEH 379
           EEA+E F +M   G +PN +T LG+L AC H GL+E+G++YF   K     +PG   P H
Sbjct: 582 EEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPG---PHH 638

Query: 380 YACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439
           YAC+VDLL R+G   +A + +  +P +P  G W ALLG  +IH  +++ + AA++I  L+
Sbjct: 639 YACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLE 698

Query: 440 PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           P++ + Y +LS   S AG+  +   +R     KG+ +  G SWI
Sbjct: 699 PDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWI 742



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 152/310 (49%), Gaps = 18/310 (5%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH--HYEEAIYLFSRMLLLNIRPSEFTF 111
           E+   +   ++F+++P     S   +I  + + +     EA  LF+ M   N      ++
Sbjct: 153 ENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERN----SISY 208

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN 171
            ++I        ++  ++L+   T V  +  V   +A++  Y+K+  +EEATR+FE    
Sbjct: 209 AAMITGLARAGMVDNAEELYL-ETPVEWRDPV-CSNALISGYLKVGRLEEATRIFEGMGE 266

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
            +V+S+++M+ G  K+ +   A +LF+ MP RNVV+W AMI G+ + G  E    LF+ M
Sbjct: 267 RDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRM 326

Query: 232 LREGLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
            +EG V  N +TL     A +       G   H    +   + DVF+GN++I  Y +   
Sbjct: 327 RKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSF 386

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           + ++  +FD +  +++V+WNA+I GY QN   EE    FE+ +   +         + W 
Sbjct: 387 VVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDV---------ISWT 437

Query: 351 CNHTGLVEKG 360
              TG   KG
Sbjct: 438 TMITGFSNKG 447



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 100/190 (52%), Gaps = 4/190 (2%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  ++  S   K     ++F  +P  + ++ T +I  F     YEEAIY F  ML   +R
Sbjct: 437 TTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVR 496

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+  T  SV+ +S  L  LN G Q+H    K+G++ ++ + ++++ +Y K  ++ +  ++
Sbjct: 497 PNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQI 556

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRN 221
           F   ++PN+VS+ +MI G  +    E+AL+LF +M +     N +++  ++   +  G  
Sbjct: 557 FTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLL 616

Query: 222 EEAVNLFIEM 231
           E+  N F  M
Sbjct: 617 EQGWNYFKSM 626



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 14/241 (5%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           ++EA  +F    + N +S+T M+    +      A K+F++MP R   S+NAMI  Y+++
Sbjct: 126 LKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRS 185

Query: 219 GRN--EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDV 275
                 EA  LF EM RE     +S    A+I    +A  GM  +     ++  +   D 
Sbjct: 186 NPMMIGEASKLFAEM-RE----RNSISYAAMITG--LARAGMVDNAEELYLETPVEWRDP 238

Query: 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335
              N+LIS Y K G +E++  +F+ + ER++++W++++ GY + G+   A E FERM   
Sbjct: 239 VCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMP-- 296

Query: 336 GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395
               N VT   ++      G  E G+  F + + E    + P     M +  S  G +KE
Sbjct: 297 --ERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKE 354

Query: 396 A 396
            
Sbjct: 355 G 355



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 22/340 (6%)

Query: 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE--RFEDALKLF 197
             N    +A+L  Y +   I +A ++FE        SY  MI    +       +A KLF
Sbjct: 138 HKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLF 197

Query: 198 QEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257
            EM  RN +S+ AMI G ++ G  + A  L++E   E   P  S    A+I+      L 
Sbjct: 198 AEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSN---ALIS----GYLK 250

Query: 258 MGKSFHACAV-KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316
           +G+   A  + + +G+ DV   +S++  Y K G +  +  +F+++ ERN+VTW A+I G+
Sbjct: 251 VGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGH 310

Query: 317 AQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDP 372
            + G  E     F RMR  G ++ N  TL  +  AC+  G  ++G   +   S+   E  
Sbjct: 311 MKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFD 370

Query: 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432
             L       ++ +  R     EA++ ++D+     +  W AL+ G   +  VE G    
Sbjct: 371 VFLG----NAIIIMYCRFSFVVEARK-IFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLF 425

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472
            +      +DV S+  +    S  GK      + R M ++
Sbjct: 426 EKT---QQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ 462



 Score = 43.1 bits (100), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 88/197 (44%), Gaps = 15/197 (7%)

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           +S I+ + + G ++++  +F ++  +N ++W A++  Y +NG   +A + FE+M     +
Sbjct: 114 HSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMP----Q 169

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
               +   ++ A   +  +  G +    A++ +   +    YA M+  L+R+G    A+E
Sbjct: 170 RTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSIS---YAAMITGLARAGMVDNAEE 226

Query: 399 FLYDLPFDPGIGFWK-ALLGGCQIHSNVELG--EFAARRILALDPEDVSSYVMLSNALSV 455
              + P +     W+  +     I   +++G  E A R    +   DV S+  + +    
Sbjct: 227 LYLETPVE-----WRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCK 281

Query: 456 AGKWDNVSNIRREMKEK 472
            GK  +   +   M E+
Sbjct: 282 KGKIGHARELFERMPER 298


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 221/372 (59%)

Query: 147 SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV 206
           + ILD Y+K   + +A  +FE     NVVS++TM+ G  K    E A  LF +MP +N+V
Sbjct: 224 NTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLV 283

Query: 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACA 266
           +W  +I G+++ G  +EA  L+ +M   GL P+  TL   + A A    L +GK  HA  
Sbjct: 284 TWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASI 343

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
            K   K  V V N+L+  YAKCG ++ +L +F++++ R++V+WN ++ G A +G GE+AI
Sbjct: 344 KKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAI 403

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386
           + F +M+  G +P+ VTL+ +L AC H G V++G SYF+  + +   +   EHY CM+DL
Sbjct: 404 QLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDL 463

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446
           L R GR +EA   +  +P +P    W  LLG C++H+ V L E    R++ L+  D  +Y
Sbjct: 464 LGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNY 523

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
            MLSN  + AG W++V+N+R +MK  G+ +  G S IE+  +VH F   D++H   D+IY
Sbjct: 524 SMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFTVFDKSHPETDKIY 583

Query: 507 AVLRSCTEQIRE 518
            +L    + +++
Sbjct: 584 QILVKLGQDLKQ 595



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 178/409 (43%), Gaps = 65/409 (15%)

Query: 58  FSSVHQ------VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111
           FS  HQ      VF+++ D NV    T+I    +     +A   F  M    +    FT+
Sbjct: 65  FSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTY 124

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK--LSSIEEATRVFEDT 169
             ++ +      L   + +H    K G   ++FV ++++D Y K  L  +  A ++F + 
Sbjct: 125 PFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEM 184

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              ++VS+ +MI GL+K      A KLF EM  R+ VSWN ++ GY + G   +A NLF 
Sbjct: 185 GEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFE 244

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M    +V                                         ++++S Y K G
Sbjct: 245 KMPERNVVS---------------------------------------WSTMVSGYCKTG 265

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ME + ++FDK+  +N+VTW  +I G+A+ G  +EA   + +M   G++P+  TL+ +L 
Sbjct: 266 DMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILA 325

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-------MVDLLSRSGRFKEAKEFLYD 402
           AC  +GL+  G    +         +K     C       +VD+ ++ GR  +A     +
Sbjct: 326 ACAESGLLVLGKKVHAS--------IKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNE 377

Query: 403 LPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVML 449
           +     +  W  +L G  +H + E  +  F+  +     P+ V+   +L
Sbjct: 378 MSMRDLVS-WNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAIL 425



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 104/189 (55%), Gaps = 5/189 (2%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +FD++P  N+V+ T II  FA++   +EA  L+++M    ++P + T  S++ +      
Sbjct: 273 LFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGL 332

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LGK++HA   K+ ++ +V V +A++D+Y K   +++A  +F +    ++VS+  M+ G
Sbjct: 333 LVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQG 392

Query: 184 LLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVP 238
           L      E A++LF +M       + V+  A++   +  G  ++ ++ F  M R+ G+VP
Sbjct: 393 LAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVP 452

Query: 239 NHSTLPCAI 247
           +     C I
Sbjct: 453 HIEHYGCMI 461



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%)

Query: 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN 319
           K  HA  +K     D++V   LIS ++ C  M  ++ VF+++ + N+  +N +I  + QN
Sbjct: 40  KEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQN 99

Query: 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
            +  +A   F  M+ NG+  +  T   LL ACN  G
Sbjct: 100 SQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKG 135


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 148/448 (33%), Positives = 247/448 (55%), Gaps = 32/448 (7%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
            +VF  +   + VS  ++I  + +   ++EA+ LF +M+  +++P   T+  ++  ST L
Sbjct: 430 QEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQL 488

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            DL LGK+LH    K+G  SN+ V + ++D+Y K                          
Sbjct: 489 GDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAK-------------------------- 522

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG        D+LK+F+ M  R++++WN +I     +      + +   M  EG+ P+ +
Sbjct: 523 CG-----EMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMA 577

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T+   +   + +AA   GK  H C  K   + DV VGN LI  Y+KCGS+ +S  VF  +
Sbjct: 578 TMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLM 637

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             +++VTW A+I      G G++A+  F  M   GI P+ V  + +++AC+H+GLVE+G 
Sbjct: 638 KTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGL 697

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           +YF + K +     + EHYAC+VDLLSRS    +A++F+  +P  P    W ALL  C++
Sbjct: 698 NYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRM 757

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
             + E+ +  + RI+ L+P+D   YV++SN  +  GKWD V +IR+ +K +G+ + PGCS
Sbjct: 758 SGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCS 817

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           W+EI++KV+VF TG +     +E+  +L
Sbjct: 818 WMEIQNKVYVFGTGTKFSEQFEEVNKLL 845



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 147/292 (50%), Gaps = 32/292 (10%)

Query: 69  PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128
           P  NV    +II        + EA+ L+S    + ++P  +TF SVI +   L D  + K
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
            +H     +G  S++++G+A++D+Y + + +++A +VFE                     
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFE--------------------- 233

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
                     EMP R+VVSWN++I GY+  G   EA+ ++      G+VP+  T+   + 
Sbjct: 234 ----------EMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLR 283

Query: 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308
           A   + ++  G   H    K   K DV V N L+S Y K   + D   +FDK+  R+ V+
Sbjct: 284 ACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVS 343

Query: 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           WN +ICGY+Q G  EE+I+ F  M +N  +P+ +T+  +L AC H G +E G
Sbjct: 344 WNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHLGDLEFG 394



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 160/366 (43%), Gaps = 70/366 (19%)

Query: 56  DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
           +      +VF+E+P  +VVS  ++I  +    ++ EA+ ++ R   L + P  +T  SV+
Sbjct: 223 NDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVL 282

Query: 116 PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI---------------- 159
            +   L  +  G  +H    K+G++ +V V + +L +Y K + +                
Sbjct: 283 RACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAV 342

Query: 160 ---------------EEATRVFEDTHN---PNVVSYTTMI--CGLLKRERFEDAL----- 194
                          EE+ ++F +  N   P++++ T+++  CG L    F   +     
Sbjct: 343 SWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMI 402

Query: 195 ----------------------------KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                                       ++F  M  ++ VSWN+MI  Y Q G  +EA+ 
Sbjct: 403 TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMK 462

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           LF +M++  + P+  T    +  +  +  L +GK  H    K     ++ V N+L+  YA
Sbjct: 463 LF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYA 521

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCG M DSL VF+ +  R+I+TWN +I     +      +    RMR  G+ P+  T+L 
Sbjct: 522 KCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLS 581

Query: 347 LLWACN 352
           +L  C+
Sbjct: 582 ILPVCS 587


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 162/463 (34%), Positives = 258/463 (55%), Gaps = 32/463 (6%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-----LLLNIRPSEFTFGSVIPS 117
           +VFD + D  +     +I  +A+  + EEA+ LF  M     LL N      T   V+P+
Sbjct: 355 RVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLAN----STTMAGVVPA 410

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
                  +  + +H +  K GL  + FV +A++D+Y +L  I+ A R+F    + ++V++
Sbjct: 411 CVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTW 470

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            T+I G +  ER EDAL +  +M    ++   A          +E A        R  L 
Sbjct: 471 NTIITGYVFSERHEDALLMLHKM---QILERKA----------SERAS-------RVSLK 510

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
           PN  TL   + + A ++AL  GK  HA A+K     DV VG++L+  YAKCG ++ S  V
Sbjct: 511 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 570

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           FD++  RN++TWN ++  Y  +G  ++AI+    M + G++PN VT + +  AC+H+G+V
Sbjct: 571 FDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMV 630

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKAL 415
            +G   F   K +       +HYAC+VDLL R+GR KEA + +  +P  FD   G W +L
Sbjct: 631 NEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKA-GAWSSL 689

Query: 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           LG C+IH+N+E+GE AA+ ++ L+P   S YV+L+N  S AG W   + +RR MK +G+ 
Sbjct: 690 LGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVR 749

Query: 476 RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           + PGCSWIE   +VH FV GD +H  ++++   L +  E++R+
Sbjct: 750 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRK 792



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 171/367 (46%), Gaps = 44/367 (11%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           ++V+  T++    +   + EA+     M+L  + P  FT  SV+P+ + LE L  GK+LH
Sbjct: 262 DLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELH 321

Query: 132 AWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           A+A K G L  N FVGSA++D+Y     +    RVF+   +  +  +  MI G  + E  
Sbjct: 322 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYD 381

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
           E+AL LF EM                     EE+          GL+ N +T+   + A 
Sbjct: 382 EEALLLFIEM---------------------EESA---------GLLANSTTMAGVVPAC 411

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
               A    ++ H   VK     D FV N+L+  Y++ G ++ +  +F K+ +R++VTWN
Sbjct: 412 VRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWN 471

Query: 311 AVICGYAQNGRGEEAIEFFERMRI-----------NGIRPNGVTLLGLLWACNHTGLVEK 359
            +I GY  + R E+A+    +M+I             ++PN +TL+ +L +C     + K
Sbjct: 472 TIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAK 531

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G    + A +++         + +VD+ ++ G  + +++    +P    I  W  ++   
Sbjct: 532 GKEIHAYA-IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVIT-WNVIVMAY 589

Query: 420 QIHSNVE 426
            +H N +
Sbjct: 590 GMHGNSQ 596



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 179/373 (47%), Gaps = 48/373 (12%)

Query: 91  EAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ-SNVFVGSAI 149
           EA+  +  M++L I+P  F F +++ +   L+D++LGKQ+HA   K G    +V V + +
Sbjct: 76  EAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTL 135

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           ++LY K        +VF+     N VS+ ++I  L   E++E AL+ F+           
Sbjct: 136 VNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFR----------- 184

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA---ALGMGKSFHACA 266
                                ML E + P+  TL    +A +N      L MGK  HA  
Sbjct: 185 --------------------CMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYG 224

Query: 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326
           ++  G+L+ F+ N+L++ Y K G +  S ++      R++VTWN V+    QN +  EA+
Sbjct: 225 LR-KGELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEAL 283

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMV 384
           E+   M + G+ P+G T+  +L AC+H  ++  G    + A L++ G L    +  + +V
Sbjct: 284 EYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYA-LKN-GSLDENSFVGSALV 341

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444
           D+     +       ++D  FD  IG W A++ G   ++  E  E A    L L  E   
Sbjct: 342 DMYCNCKQVLSGCR-VFDGMFDRKIGLWNAMITG---YAQNEYDEEA----LLLFIEMEE 393

Query: 445 SYVMLSNALSVAG 457
           S  +L+N+ ++AG
Sbjct: 394 SAGLLANSTTMAG 406



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 176/377 (46%), Gaps = 51/377 (13%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG     F +V++VFD + + N VS  ++I        +E A+  F  ML  ++ PS FT
Sbjct: 142 CGD----FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFT 197

Query: 111 FGSVIPSSTAL---EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             SV  + +     E L +GKQ+HA+  + G + N F+ + ++ +Y K+  +  +  +  
Sbjct: 198 LVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLG 256

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                ++V++ T++  L + E+F +AL+  +                             
Sbjct: 257 SFEGRDLVTWNTVLSSLCQNEQFLEALEYLR----------------------------- 287

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFY 285
             EM+ EG+ P+  T+   + A +++  L  GK  HA A+K  G LD   FVG++L+  Y
Sbjct: 288 --EMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKN-GSLDENSFVGSALVDMY 344

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTL 344
             C  +     VFD + +R I  WNA+I GYAQN   EEA+  F  M  + G+  N  T+
Sbjct: 345 CNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTM 404

Query: 345 LGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
            G++ AC  +G   K    + +  +  L+    ++      ++D+ SR G+   AK    
Sbjct: 405 AGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQ----NALMDMYSRLGKIDIAKRIFG 460

Query: 402 DLPFDPGIGFWKALLGG 418
            +  D  +  W  ++ G
Sbjct: 461 KME-DRDLVTWNTIITG 476



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 58/243 (23%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-----------NIR 105
           K     ++F ++ D ++V+  TII  +     +E+A+ +  +M +L           +++
Sbjct: 451 KIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLK 510

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165
           P+  T  +++PS  AL  L  GK++HA+A K  L ++V VGSA++D+Y K          
Sbjct: 511 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAK---------- 560

Query: 166 FEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225
                           CG L+  R     K+F ++P RNV++WN ++  Y   G +++A+
Sbjct: 561 ----------------CGCLQMSR-----KVFDQIPIRNVITWNVIVMAYGMHGNSQDAI 599

Query: 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG----------------KSFHACAVKF 269
           ++   M+ +G+ PN  T      A ++   +  G                   +AC V  
Sbjct: 600 DMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDL 659

Query: 270 LGK 272
           LG+
Sbjct: 660 LGR 662


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 260/454 (57%), Gaps = 4/454 (0%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD     +V S   +I  + +   YEE+I L   M    + P+  T   V+ + + ++D
Sbjct: 192 VFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD 251

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
            +L K++H + ++   + ++ + +A+++ Y     ++ A R+F      +V+S+T+++ G
Sbjct: 252 KDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKG 311

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
            ++R   + A   F +MP R+ +SW  MI GY + G   E++ +F EM   G++P+  T+
Sbjct: 312 YVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTM 371

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A++ +L +G+       K   K DV VGN+LI  Y KCG  E +  VF  + +
Sbjct: 372 VSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQ 431

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R+  TW A++ G A NG+G+EAI+ F +M+   I+P+ +T LG+L ACNH+G+V++   +
Sbjct: 432 RDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKF 491

Query: 364 FSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F  AK+     ++P   HY CMVD+L R+G  KEA E L  +P +P    W ALLG  ++
Sbjct: 492 F--AKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRL 549

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H++  + E AA++IL L+P++ + Y +L N  +   +W ++  +RR++ +  + + PG S
Sbjct: 550 HNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFS 609

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
            IE+    H FV GD++H  ++EIY  L    ++
Sbjct: 610 LIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 146/293 (49%), Gaps = 26/293 (8%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA-AA 251
           A KLF ++P  +VV WN MI G+S+   + E V L++ ML+EG+ P+  T P  +     
Sbjct: 87  AYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKR 146

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA 311
           +  AL  GK  H   VKF    +++V N+L+  Y+ CG M+ +  VFD+  + ++ +WN 
Sbjct: 147 DGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNL 206

Query: 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT---GLVEKGYSYFSQAK 368
           +I GY +    EE+IE    M  N + P  VTLL +L AC+      L ++ + Y S+ K
Sbjct: 207 MISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECK 266

Query: 369 LEDPGM-----LKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422
            E P +     L   + AC  +D+  R  R  +A++ +           W +++ G    
Sbjct: 267 TE-PSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS----------WTSIVKGYVER 315

Query: 423 SNVELGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
            N++L    AR      P  D  S+ ++ +    AG ++    I REM+  GM
Sbjct: 316 GNLKL----ARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/507 (20%), Positives = 220/507 (43%), Gaps = 86/507 (16%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I +L +C+++   ++  +LHS +    +       +KL           C       S  
Sbjct: 38  ISILGVCKTT---DQFKQLHSQSITRGVAPNPTFQKKLFV-------FWCSRLGGHVSYA 87

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-STA 120
           +++F ++P+ +VV    +I  ++K     E + L+  ML   + P   TF  ++      
Sbjct: 88  YKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRD 147

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
              L  GK+LH    K GL SN++V +A++ +Y     ++ A  VF+     +V S+  M
Sbjct: 148 GGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLM 207

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I G  + + +E++++L  EM  RN+VS                              P  
Sbjct: 208 ISGYNRMKEYEESIELLVEM-ERNLVS------------------------------PTS 236

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            TL   + A + +    + K  H    +   +  + + N+L++ YA CG M+ ++ +F  
Sbjct: 237 VTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRS 296

Query: 301 LTERNIVTWNAVICGYAQNGRGE-------------------------------EAIEFF 329
           +  R++++W +++ GY + G  +                               E++E F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDL 386
             M+  G+ P+  T++ +L AC H G +E G    +Y  + K+++  ++       ++D+
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVG----NALIDM 412

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGF-WKALLGGCQIHSNVE--LGEFAARRILALDPEDV 443
             + G  ++A++  +D+  D    F W A++ G   +   +  +  F   + +++ P+D+
Sbjct: 413 YFKCGCSEKAQKVFHDM--DQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDI 470

Query: 444 SSYVMLSNALSVAGKWDNVSNIRREMK 470
            +Y+ + +A + +G  D       +M+
Sbjct: 471 -TYLGVLSACNHSGMVDQARKFFAKMR 496


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 162/556 (29%), Positives = 284/556 (51%), Gaps = 54/556 (9%)

Query: 7   ICRSSLSLN----KLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH 62
           +C   L +N     L KLHS     LI+        L    +R    +CG          
Sbjct: 40  LCNKILDVNPDAKTLKKLHS---KILIDQNLHPNPSLGIKLMRA-YAACGEPC----YTR 91

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            +FDE+ D NVV    +I  +     Y++A+ +F  M      P  +T+  V+ + +   
Sbjct: 92  HIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSG 151

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           +L +G Q+H    K+GL  N+++G+ ++ +Y K   ++ A RV ++    ++VS+ +M+ 
Sbjct: 152 NLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVA 211

Query: 183 GLLKRERFEDALKLFQEM-------------------------------------PHRNV 205
           G  +  RF DALKL +EM                                       +++
Sbjct: 212 GYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSL 271

Query: 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265
           +SWN MI  Y       EAV+L+++M   G+ P+  ++   + A  +++A  +G+  H  
Sbjct: 272 ISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEY 331

Query: 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325
             +   + ++ + N+LI  YAKCG ++++  VFD++  R++V+W ++I  Y  +G+G++A
Sbjct: 332 VERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDA 391

Query: 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-YSYFSQAKLE-DPGMLKPEHYACM 383
           +  F++MR +G  P+ +  + +L AC+H GLV++G Y +   A+    PG+   EHY CM
Sbjct: 392 VALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGITPGI---EHYNCM 448

Query: 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443
           VDLL R+G+  EA      +P +P    W +LL  C+++S++ +   AA  +  L PE  
Sbjct: 449 VDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQS 508

Query: 444 SSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMND 503
             YV+LSN  + AG+W +V  +R  M  KG+ ++PG S +EI   V+ F+ GD++H  + 
Sbjct: 509 GYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSK 568

Query: 504 EIYAVLRSCTEQIREF 519
           EIY  L     +++E 
Sbjct: 569 EIYKALGVLVGRMKEL 584


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 258/449 (57%), Gaps = 2/449 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTAL 121
           ++FDE+ D +VVS TT+I  +A+    +EA  +F RM++  ++ P+E T  +   ++  +
Sbjct: 187 KLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQM 246

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L LG+ +H    + G + +V + +A++D++ K   +  A  VF+     +V S+T+M+
Sbjct: 247 GLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMV 306

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               K    E+A KLF+E+P+RNVVSW+ M+  YS     +EA+ +F +M+  G+ P  +
Sbjct: 307 SAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366

Query: 242 TLPCAIIAAANIAALGMGK-SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           TL   + A A + +L +G   +    V    +L   + N+ I  +AKCG +  +  +F  
Sbjct: 367 TLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSN 426

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ++N+V+WN +I  +  +G+ EEA+  F+  + NGI P+  T +G+L AC+H GLV +G
Sbjct: 427 MEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEG 486

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             +F + K+      + EHYACM+DLL + G  +EA E    +P       W ALL  C+
Sbjct: 487 RCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACR 546

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H NVE+G+ AA ++  LDP D   YV++S   +   KW  V  +R  M+++ + + PGC
Sbjct: 547 MHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGC 606

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           S IE+  K H F+  D +H  +++IYA L
Sbjct: 607 SSIEVDGKCHEFLVADVSHVHSEDIYAAL 635



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 140/319 (43%), Gaps = 45/319 (14%)

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNHSTLPCAII 248
             DA KLF EM  R+VVSW  +I GY++ G  +EA  +F  M + E + PN  TL  A  
Sbjct: 182 LPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAAS 241

Query: 249 AAANIAALGMGKSFHACAVKFLGKL-------------------------------DVFV 277
           AA  +  LG+G++ H C V+  G++                               DV+ 
Sbjct: 242 AAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYS 301

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
             S++S YAKCG +E++  +F ++  RN+V+W+ ++  Y+     +EAI  F  M   G+
Sbjct: 302 WTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGV 361

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397
            P   TL+ +L AC     ++ G   +    +     L P      +D+ ++ G    A 
Sbjct: 362 EPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAAS 421

Query: 398 EFLYDLPFDPGIGFWKALLGGCQIHSNVE-----LGEFAARRILALDPEDVSSYVMLSNA 452
               ++  D  +  W  ++    +H   E       EF    IL     D ++Y+ + +A
Sbjct: 422 RLFSNME-DKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGIL----PDEATYIGVLSA 476

Query: 453 LSVAGKWDNVSNIRREMKE 471
            S  G    VS  R   KE
Sbjct: 477 CSHGGL---VSEGRCHFKE 492



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 133/297 (44%), Gaps = 12/297 (4%)

Query: 182 CGLLKRERFEDALK-LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           C L    R   A   L Q     N      M+ G+ + G+   A+ LF  +LR+ L  + 
Sbjct: 73  CALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDA 132

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
            T+  A+ AAA  ++    ++ H  A K  F+G+  V  GN+L+  Y     + D+  +F
Sbjct: 133 RTIVFAVKAAATSSS--PTEAIHCVAFKRGFIGQ-SVLAGNALVHMYTSSMLLPDARKLF 189

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLV 357
           D++ +R++V+W  +I GYA+ G  +EA   F RM +   + PN VTL+    A    GL+
Sbjct: 190 DEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLL 249

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
             G +   Q  +E  G +       +VD+  + G    AKE    +P    +  W +++ 
Sbjct: 250 GLGRT-VHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIK-DVYSWTSMVS 307

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474
                 ++   E AA+    +   +V S+  +  A S A   D    I  +M   G+
Sbjct: 308 AYAKCGDL---ENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGV 361



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  ++     +  ++F E+P+ NVVS + ++  ++  +  +EAI +F+ M+   + 
Sbjct: 303 TSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVE 362

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAW---ATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           P + T  SV+ +   L  L++G  L+     + KV L  N  + +A +D++ K   +  A
Sbjct: 363 PIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPN--LSNAFIDMFAKCGDVGAA 420

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQT 218
           +R+F +  + NVVS+ TMI       + E+AL LFQE     ++    ++  ++   S  
Sbjct: 421 SRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHG 480

Query: 219 GRNEEAVNLFIEM-LREGLVPNHSTLPCAI 247
           G   E    F EM +  G+ P      C I
Sbjct: 481 GLVSEGRCHFKEMKIVYGIEPRAEHYACMI 510


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 254/462 (54%), Gaps = 33/462 (7%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S S +  +  ++FD++ D ++VS   +I  +A+   Y +   +F RM      P+E
Sbjct: 169 ISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNE 228

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
            T  +V+     L DL +G ++        L SN+ V +A+L++Y+K  ++++   VF+ 
Sbjct: 229 ITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFD- 287

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
                                          M  R+VV+W+AMI GY+Q GR+ EA+ LF
Sbjct: 288 ------------------------------HMARRDVVTWSAMIAGYAQNGRSNEALELF 317

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-DVFVGNSLISFYAK 287
             M    + PN  TL   + A A + ++  G+      V+  G + +V+V ++L+  Y+K
Sbjct: 318 ENMKSAQIKPNDVTLVSVLSACAQLGSVETGERI-GSYVESRGLISNVYVASALLGMYSK 376

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG++  +  +FDKL +R+ VTWN++I G A NG  E+AI  + RM+   ++PN +T +GL
Sbjct: 377 CGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGL 436

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           + AC H G VE G  +F   + +       EH+AC+VDL  RSGR  +A EF+  +  +P
Sbjct: 437 MTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEP 496

Query: 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467
            +  W  LL   +IH NVEL E A +++L L+P++  +YV+LSN  + AG+W     +R+
Sbjct: 497 NVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRK 556

Query: 468 EMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
            MK+K + +    SW+E++ +VH F+ GD +H  +DE+Y+ +
Sbjct: 557 LMKDKRVQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEVYSTI 598



 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 206/399 (51%), Gaps = 9/399 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           QVFD++P  +     + I  +++     EA+  F  M   N+R   FT   +  S  +L 
Sbjct: 51  QVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLL 110

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            +++GKQ+H+   + G  S+VF  +A+++ Y K++ +  A  +F+     + ++Y  +I 
Sbjct: 111 AIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLIS 170

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
              +      A +LF +M  R++VSWNAMI  Y+Q G   +   +F  M  E   PN  T
Sbjct: 171 AYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEIT 230

Query: 243 LPCAIIAAANIAALGMGKSFHAC-AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           L   +   A +  L MG         K LG  ++ V  +++  Y KCG+++D  LVFD +
Sbjct: 231 LATVLSICAKLGDLEMGLRIKKLNDNKNLGS-NMIVSTAMLEMYVKCGAVDDGRLVFDHM 289

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             R++VTW+A+I GYAQNGR  EA+E FE M+   I+PN VTL+ +L AC   G VE G 
Sbjct: 290 ARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGE 349

Query: 362 SYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              S   +E  G++   + A  ++ + S+ G   +A++    LP    +  W +++ G  
Sbjct: 350 RIGSY--VESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVT-WNSMIMGLA 406

Query: 421 IHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           I+   E  +  +   + + + P ++ ++V L  A + AG
Sbjct: 407 INGFAEDAIALYNRMKEIEVKPNNI-TFVGLMTACTHAG 444



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 134/302 (44%), Gaps = 39/302 (12%)

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           LL     + A ++F ++PH +     + I  YS+   N EA+  F+ M +  +     T+
Sbjct: 40  LLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTI 99

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC---GSME---DSLLV 297
           P    + A++ A+ +GK  H+  +++     VF  N+LI+FYAK    GS E   D +LV
Sbjct: 100 PPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILV 159

Query: 298 -------------------------FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
                                    FDK+ +R+IV+WNA+I  YAQNG   +    F+RM
Sbjct: 160 KDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRM 219

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRS 390
           +     PN +TL  +L  C   G +E G       KL D   L         M+++  + 
Sbjct: 220 QDEMCEPNEITLATVLSICAKLGDLEMG---LRIKKLNDNKNLGSNMIVSTAMLEMYVKC 276

Query: 391 GRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--SNVELGEFAARRILALDPEDVSSYVM 448
           G   + +  ++D      +  W A++ G   +  SN  L  F   +   + P DV+   +
Sbjct: 277 GAVDDGR-LVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSV 335

Query: 449 LS 450
           LS
Sbjct: 336 LS 337


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 160/504 (31%), Positives = 263/504 (52%), Gaps = 42/504 (8%)

Query: 12  LSLNKLSKL-HSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD 70
           ++L   S+L H L     +  +   +     P + T  ++  +         +VFDE+P 
Sbjct: 75  IALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPH 134

Query: 71  LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            + VS T +I  +       EA+++        +RP  FT   V+ +   + DL  G+ +
Sbjct: 135 PSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETV 194

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
              A + G+  +VFV +A +DLY+K                          CG + + R 
Sbjct: 195 WRAAEQEGIAQSVFVATAAVDLYVK--------------------------CGEMAKAR- 227

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
               ++F +M  ++ V+W AM+GGY+  G   EA++LF+ M  EG+ P+   +  A+ A 
Sbjct: 228 ----EVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSAC 283

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFV-----GNSLISFYAKCGSMEDSLLVFDKLTERN 305
             + AL +G+     A++ +   D F+     G +LI  YAKCGS  ++ +VF ++ +++
Sbjct: 284 TRLGALDLGRQ----AIRMV-DWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKD 338

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           I+ WNA+I G    G  + A     +M  +G++ N  T +GLL +C HTGL++ G  YF 
Sbjct: 339 IIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 398

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
                     + EHY C+VDLLSR+G  +EA + + D+P         ALLGGC+IH N 
Sbjct: 399 NMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNA 458

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           EL E    +++ L+P +  +YVMLSN  S  G+W++ + +R +MKEKG+ +VP CSW+E 
Sbjct: 459 ELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEF 518

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVL 509
           + KVH F  GD++H ++D+IY  L
Sbjct: 519 EGKVHEFRVGDKSHPLSDQIYKKL 542


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 163/517 (31%), Positives = 284/517 (54%), Gaps = 41/517 (7%)

Query: 2   IQLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSV 61
           I L+ +C SS S  KL ++H+ +  + +  Q     K    A+        S S   S  
Sbjct: 38  ISLVQLCGSSQS--KLKQIHAFSIRHGVPPQNPDFNKHLIFALV-------SLSAPMSFA 88

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM-LLLNIRPSEFTFGSVIPSSTA 120
            Q+F+++   N+ +  T+I  FA+  +   A+ LFS+M    +I P   TF  +  +   
Sbjct: 89  AQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAK 148

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
           L D++LG+ +H+   + G  S  FV ++++ +Y  L S+  A +VFE      ++SY   
Sbjct: 149 LMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFE------IMSY--- 199

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
                                 R+ V+WN++I G++  G   EA+ L+ EM  EG+ P+ 
Sbjct: 200 ----------------------RDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDG 237

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
            T+   + A   + AL +G+  H   VK     +    N+L+  Y+KCG+  D+  VFD+
Sbjct: 238 FTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDE 297

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ER++V+W ++I G A NG G EA++ F  +   G++P+ +T +G+L+AC+H G++++G
Sbjct: 298 MEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEG 357

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
           ++YF + K E   + + EH+ CMVDLL R+G+  +A +++ ++P  P    W+ LLG C 
Sbjct: 358 FNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACT 417

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH ++ELGE A   I  L+      +V+LSN  +   +W +V N+R+ M  KG+ + PG 
Sbjct: 418 IHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGY 477

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           S +E+K++V+ F+ GDR+H  ++E YA+L   T+ ++
Sbjct: 478 SLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLK 514


>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
          Length = 467

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 248/437 (56%), Gaps = 12/437 (2%)

Query: 93  IYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL 152
           + L++RM+     P+EFT+  +I        L  G+Q+H      G  +NVFV +++++L
Sbjct: 15  VELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNL 74

Query: 153 YI---KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           Y        + +A RVF++  + N+VS+ +++ G ++    + A ++F EMP RNVVSW 
Sbjct: 75  YAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWT 134

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
            MI G +Q GR ++A++LF EM R G+  +   L  A+ A A +  L +G   H+   + 
Sbjct: 135 TMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDER 194

Query: 270 L----GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325
           L      L V + NSLI  YA CG ++ +  VF  + +R+ ++W ++I G+A+ G  EEA
Sbjct: 195 LHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEA 254

Query: 326 IEFFERMRINGI---RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC 382
           +  F+ M+  G    RP+G+T +G+L AC+H G V++G  +F     +   + + EHY C
Sbjct: 255 LGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGC 314

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRI-LALDPE 441
           MVDLLSR+G   EA   +  +P  P    W ALLGGC+IH N EL    A+++ L L P+
Sbjct: 315 MVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPD 374

Query: 442 DVSSY-VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHH 500
             + Y V+LSN  + A +W +V+ +R++M E G+ +  G SW++I   VH FV GD  H 
Sbjct: 375 QAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVAGDWTHK 434

Query: 501 MNDEIYAVLRSCTEQIR 517
               +Y +L   T Q +
Sbjct: 435 HASSVYEMLSKITRQAK 451



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           V CG          ++FDE+P+ NVVS TT+I   A+    ++A++LF  M    ++  +
Sbjct: 110 VRCGD----VDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQ 165

Query: 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN----VFVGSAILDLYIKLSSIEEATR 164
               + + +   L DL LG  +H++  +     N    V + ++++ +Y     I++A +
Sbjct: 166 VALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYK 225

Query: 165 VFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200
           VF      + +S+T+MI G  K+   E+AL +FQ M
Sbjct: 226 VFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWM 261



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 37/193 (19%)

Query: 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270
           MI G+SQ+    + V L+  M+     PN  T    I   A    L  G+  H   V   
Sbjct: 1   MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60

Query: 271 GKLDVFVGNSLISFYA----------------------------------KCGSMEDSLL 296
              +VFV  SL++ YA                                  +CG ++ +  
Sbjct: 61  YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 120

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           +FD++ ERN+V+W  +I G AQ GR ++A+  F  MR  G++ + V L+  L AC   G 
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180

Query: 357 VEKG---YSYFSQ 366
           ++ G   +SY  +
Sbjct: 181 LKLGTWIHSYIDE 193


>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
          Length = 540

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 154/467 (32%), Positives = 248/467 (53%), Gaps = 42/467 (8%)

Query: 34  ASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAI 93
           A V      A+     +CG   D      +VFD +PD ++V+   ++  + +  +YEEA+
Sbjct: 100 AEVDGFVGTALVRAYAACGRVED----ARKVFDGMPDRDLVAWGVMLDCYCQARNYEEAL 155

Query: 94  YLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLY 153
            LF  M    + P +    +V+ +     +L  GK +H++        +  V  A++++Y
Sbjct: 156 LLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMY 215

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
              + +E A +++      ++V  TTM+ G  K  + E A  +F  MP ++VVSW+AMI 
Sbjct: 216 ASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIA 275

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           GY+++ +  EA+NLF +M R G+ P+  T+                             L
Sbjct: 276 GYAESSKPMEALNLFHDMQRSGVQPDEITM-----------------------------L 306

Query: 274 DVF-VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332
            +  +GN+LI  ++KCGS+  +L VF+ + ++N+VTW ++I   A +G G  A+  FE M
Sbjct: 307 SILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENM 366

Query: 333 RINGIRPNGVTLLGLLWACNHTGLVEKGYSYF----SQAKLEDPGMLKPEHYACMVDLLS 388
           +  GI+PNGVT LGLL+AC H GLVE+G   F     Q ++E       EHY CMVDLL 
Sbjct: 367 KSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEP----MHEHYGCMVDLLG 422

Query: 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVM 448
           R+    +A + +  +   P +  W +LL  C++H ++ELG FAA++IL LDP    + V+
Sbjct: 423 RAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGAFAAKKILELDPNHGGAQVL 482

Query: 449 LSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG 495
           LSN  +  G W++V  +R  MK +G  +  GCSW+E+   VH F  G
Sbjct: 483 LSNIYAEYGNWNDVKEVRGVMKVQGTWKKKGCSWMELNGSVHQFAVG 529



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 126/225 (56%), Gaps = 14/225 (6%)

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           H  A +VG + + FVG+A++  Y     +E+A +VF+   + ++V++  M+    +   +
Sbjct: 92  HGLAFRVGAEVDGFVGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNY 151

Query: 191 EDALKLFQEMPHRNVVSWNAMIG------GYSQTGRNEEAVNLFIEMLREGLVPNHSTLP 244
           E+AL LF  M    VV    +I        +++  R  +A++ ++ ++ + L+   + + 
Sbjct: 152 EEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYM-LVSDALI--DAQVS 208

Query: 245 CAII-AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
           CA++   A+ A + M +  +      + + D+ +  +++  YAK G +E +  +F+ + E
Sbjct: 209 CALMNMYASCADMEMAEKLY----NRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPE 264

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           +++V+W+A+I GYA++ +  EA+  F  M+ +G++P+ +T+L +L
Sbjct: 265 KDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVQPDEITMLSIL 309



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 8/253 (3%)

Query: 224 AVNLFIEMLREGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282
           A+  F  + R GL  P    LP  + A A     G   + H  A +   ++D FVG +L+
Sbjct: 52  ALAAFACLRRVGLPAPGRRALPSLLRAIALARFPGTAGAAHGLAFRVGAEVDGFVGTALV 111

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YA CG +ED+  VFD + +R++V W  ++  Y Q    EEA+  F  M+ + + P+ V
Sbjct: 112 RAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQV 171

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
            +  +L  C HT  +  G +  S   + D   L     +C +  +  S    E  E LY+
Sbjct: 172 IIATVLSTCAHTRNLRFGKAIHSYMLVSDA--LIDAQVSCALMNMYASCADMEMAEKLYN 229

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDN 461
              +  I     ++ G   +  VE+    A  I    PE DV S+  +    + + K   
Sbjct: 230 RVSEKDIVLSTTMVYGYAKNGKVEI----AHSIFNGMPEKDVVSWSAMIAGYAESSKPME 285

Query: 462 VSNIRREMKEKGM 474
             N+  +M+  G+
Sbjct: 286 ALNLFHDMQRSGV 298


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 160/504 (31%), Positives = 263/504 (52%), Gaps = 42/504 (8%)

Query: 12  LSLNKLSKL-HSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD 70
           ++L   S+L H L     +  +   +     P + T  ++  +         +VFDE+P 
Sbjct: 122 IALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPH 181

Query: 71  LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            + VS T +I  +       EA+++        +RP  FT   V+ +   + DL  G+ +
Sbjct: 182 PSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETV 241

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
              A + G+  +VFV +A +DLY+K                          CG + + R 
Sbjct: 242 WRAAEQEGIAQSVFVATAAVDLYVK--------------------------CGEMAKAR- 274

Query: 191 EDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250
               ++F +M  ++ V+W AM+GGY+  G   EA++LF+ M  EG+ P+   +  A+ A 
Sbjct: 275 ----EVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSAC 330

Query: 251 ANIAALGMGKSFHACAVKFLGKLDVFV-----GNSLISFYAKCGSMEDSLLVFDKLTERN 305
             + AL +G+     A++ +   D F+     G +LI  YAKCGS  ++ +VF ++ +++
Sbjct: 331 TRLGALDLGRQ----AIRMV-DWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKD 385

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365
           I+ WNA+I G    G  + A     +M  +G++ N  T +GLL +C HTGL++ G  YF 
Sbjct: 386 IIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFH 445

Query: 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
                     + EHY C+VDLLSR+G  +EA + + D+P         ALLGGC+IH N 
Sbjct: 446 NMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNA 505

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           EL E    +++ L+P +  +YVMLSN  S  G+W++ + +R +MKEKG+ +VP CSW+E 
Sbjct: 506 ELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEF 565

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVL 509
           + KVH F  GD++H ++D+IY  L
Sbjct: 566 EGKVHEFRVGDKSHPLSDQIYKKL 589


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 154/480 (32%), Positives = 264/480 (55%), Gaps = 50/480 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL----------L 102
           S+  +      +FDE+   N+VS T++I  + +      A+ LF   L+          +
Sbjct: 198 SKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEV 257

Query: 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
            + P      SV+ + + + + ++ + +H +  K G + ++ V + ++D Y K       
Sbjct: 258 CVDP--IAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAK------- 308

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                              CG L   R     ++F  M  R+V+SWN++I  Y+Q G + 
Sbjct: 309 -------------------CGELGVSR-----RVFDGMAERDVISWNSIIAVYAQNGMST 344

Query: 223 EAVNLFIEMLREGLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281
           E++ +F  M+++G +  N  TL   ++A A+  +  +GK  H   +K   + +VFVG S+
Sbjct: 345 ESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSI 404

Query: 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341
           I  Y KCG +E +   FD++ E+N+ +W+A++ GY  +G  +EA+E F  M + G++PN 
Sbjct: 405 IDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNY 464

Query: 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           +T + +L AC+H GL+E+G+ +F     E   +PG+   EHY CMVDLL R+G  KEA +
Sbjct: 465 ITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV---EHYGCMVDLLGRAGYLKEAFD 521

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
            +  +   P    W ALLG C++H NV+LGE +AR++  LDP++   YV+LSN  + AG+
Sbjct: 522 LIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGR 581

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
           W++V  +R  MK  G+ + PG S ++IK +VHVF+ GDR H  +++IY  L   + +++E
Sbjct: 582 WEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQE 641



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 192/404 (47%), Gaps = 51/404 (12%)

Query: 68  VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127
           V   NV S  ++I   A+     EA+  FS M  L+++P+  TF   I S +AL DL+ G
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSG 171

Query: 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187
           +Q H  A   G + ++FV SA++D+Y K                          CG L+ 
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSK--------------------------CGELR- 204

Query: 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE--------GLVPN 239
               DA  LF E+ HRN+VSW +MI GY Q      A+ LF E L E         +  +
Sbjct: 205 ----DARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVD 260

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
              +   + A + ++   + +  H   +K   + D+ V N+L+  YAKCG +  S  VFD
Sbjct: 261 PIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFD 320

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVE 358
            + ER++++WN++I  YAQNG   E++E F RM  +G I  N VTL  +L AC H+G   
Sbjct: 321 GMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQR 380

Query: 359 KGYSYFSQA---KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            G     Q     LE    +       ++D+  + G+ + A++  +D   +  +  W A+
Sbjct: 381 LGKCIHDQVIKMGLESNVFVGTS----IIDMYCKCGKVEMARK-AFDRMREKNVKSWSAM 435

Query: 416 LGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALSVAG 457
           + G  +H + +  L  F    +  + P  + ++V +  A S AG
Sbjct: 436 VAGYGMHGHAKEALEVFYEMNMAGVKPNYI-TFVSVLAACSHAG 478



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 11/193 (5%)

Query: 51  CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT 110
           CG    K     + FD + + NV S + ++  +    H +EA+ +F  M +  ++P+  T
Sbjct: 411 CG----KVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 466

Query: 111 FGSVIPSSTALEDLNLGKQ-LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           F SV+ + +    L  G     A + +  ++  V     ++DL  +   ++EA  + +  
Sbjct: 467 FVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM 526

Query: 170 H-NPNVVSYTTMI--CGLLKRERFED--ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEA 224
              P+ V +  ++  C + K     +  A KLF+  P +N   +  +   Y+  GR E+ 
Sbjct: 527 KLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDP-KNCGYYVLLSNIYADAGRWEDV 585

Query: 225 VNLFIEMLREGLV 237
             + I M   GLV
Sbjct: 586 ERMRILMKNSGLV 598


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 160/422 (37%), Positives = 242/422 (57%), Gaps = 18/422 (4%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           ++FDE+P  N +S TTII   A+    +EA  L  +M             + + + TAL 
Sbjct: 287 KLFDEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSF-----------NCVAAKTALM 335

Query: 123 DLNLGKQLHAWATKV--GLQ-SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179
              L + +   A ++  G++  +    + ++  Y++   +EEA  +F+   N ++VS+ T
Sbjct: 336 HGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNT 395

Query: 180 MICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239
           MI G  +  +   A+ +F+ M  RN VSWN++I G+ Q  R  +A++ F+ M R     +
Sbjct: 396 MIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHFMLMRRGTNRAD 455

Query: 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFD 299
            ST    + A AN+A L +G+  H   V+     D F GN+LIS YAKCG + ++  +FD
Sbjct: 456 WSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFD 515

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++  ++IV+WNA+I GYA NG+G EAI  F  M  NG+RP+ VT +G+L AC+H GL+++
Sbjct: 516 EMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDE 575

Query: 360 GYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           G  +F     E   +LKP  EHYACMVDLL R+G+  EA E +  +   P  G W ALLG
Sbjct: 576 GLFFFYSMTKE--YLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLG 633

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
            C +H N EL + AA R+  L+P   S+YV+LSN  + AGKWD     R  +KEKG+ + 
Sbjct: 634 ACHMHKNHELAQLAAERLSELEPRKASNYVLLSNISAEAGKWDESEKARASIKEKGVNKP 693

Query: 478 PG 479
           PG
Sbjct: 694 PG 695



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 139/323 (43%), Gaps = 42/323 (13%)

Query: 49  VSCGSESDKFSSVHQVFDEVP-DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           VSC +          V D +P D        +I  +AK   +++A+ L   M      P 
Sbjct: 118 VSCYARGGDLELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPA----PD 173

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
             ++ S +   T   ++    Q      K     N+ +       +++   +  A+  F 
Sbjct: 174 LVSWNSALAGLTQSGEMVRAVQFFDEMVKDMTSWNLMLAG-----FVRTGDLNAASSFFA 228

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
              +PNV+S+ T++ G  +  R  DA  LF  MP RNVV+WN M+ GY      EEA  L
Sbjct: 229 KIESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKL 288

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGK------SFHACAVK---FLGKL----- 273
           F EM     + N  +    I   A    L   K      SF+  A K     G L     
Sbjct: 289 FDEM----PIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMA 344

Query: 274 -------------DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
                        D    N++IS Y +CG +E+++L+F ++  +++V+WN +I GYAQ+G
Sbjct: 345 DDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDG 404

Query: 321 RGEEAIEFFERM-RINGIRPNGV 342
           +  +AI  F RM R N +  N V
Sbjct: 405 QMHKAIGIFRRMNRRNTVSWNSV 427



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 18/260 (6%)

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           +  A R+F+     N V+Y  M+  L +  R ++A  LF  MP RN VSWNAMI   S  
Sbjct: 34  LAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDH 93

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           GR  +A +LF  M     V +  +    +   A    L + +       +  G       
Sbjct: 94  GRVADARSLFDRM----PVRDEFSWTVMVSCYARGGDLELARD---VLDRMPGDKCTACY 146

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N++IS YAK G  +D++ +  ++   ++V+WN+ + G  Q+G    A++FF+ M +  + 
Sbjct: 147 NAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEM-VKDMT 205

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
              + L G +     TG +    S+F  AK+E P ++    +  +++   R+GR  +A++
Sbjct: 206 SWNLMLAGFV----RTGDLNAASSFF--AKIESPNVIS---WVTLLNGYCRAGRIADARD 256

Query: 399 FLYDLPFDPGIGFWKALLGG 418
               +P +  +  W  +L G
Sbjct: 257 LFDRMP-ERNVVAWNVMLDG 275



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 143/331 (43%), Gaps = 55/331 (16%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           + S + ++  ++FD +P  N V+   ++   A+    +EA  LF  M   N      ++ 
Sbjct: 29  ARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNT----VSWN 84

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           ++I    AL D        +   ++ ++   F  + ++  Y +   +E A  V +     
Sbjct: 85  AMI---AALSDHGRVADARSLFDRMPVRDE-FSWTVMVSCYARGGDLELARDVLDRMPGD 140

Query: 173 NVVS-YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
              + Y  MI G  K  RF+DA+KL +EMP  ++VSWN+ + G +Q+G    AV  F EM
Sbjct: 141 KCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFDEM 200

Query: 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD---VFVGNSLISFYAKC 288
           +++  + + + +    +   ++ A          A  F  K++   V    +L++ Y + 
Sbjct: 201 VKD--MTSWNLMLAGFVRTGDLNA----------ASSFFAKIESPNVISWVTLLNGYCRA 248

Query: 289 GSMEDSLLVFDKLTERNIVTWN-------------------------------AVICGYA 317
           G + D+  +FD++ ERN+V WN                                +I G A
Sbjct: 249 GRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLA 308

Query: 318 QNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
           + G+ +EA +  ++M  N +      + G L
Sbjct: 309 RAGKLQEAKDLLDKMSFNCVAAKTALMHGYL 339


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 258/449 (57%), Gaps = 2/449 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTAL 121
           ++FDE+ D +VVS TT+I  +A+    +EA  +F RM++  ++ P+E T  +   ++  +
Sbjct: 187 KLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQM 246

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L LG+ +H    + G + +V + +A++D++ K   +  A  VF+     +V S+T+M+
Sbjct: 247 GLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMV 306

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
               K    E+A KLF+E+P+RNVVSW+ M+  YS     +EA+ +F +M+  G+ P  +
Sbjct: 307 SAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDA 366

Query: 242 TLPCAIIAAANIAALGMGK-SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
           TL   + A A + +L +G   +    V    +L   + N+ I  +AKCG +  +  +F  
Sbjct: 367 TLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSN 426

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           + ++N+V+WN +I  +  +G+ EEA+  F+  + NGI P+  T +G+L AC+H GLV +G
Sbjct: 427 MEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEG 486

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
             +F + K+      + EHYACM+DLL + G  +EA E    +P       W ALL  C+
Sbjct: 487 RCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACR 546

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           +H NVE+G+ AA ++  LDP D   YV++S   +   KW  V  +R  M+++ + + PGC
Sbjct: 547 MHGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGC 606

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           S IE+  K H F+  D +H  +++IYA L
Sbjct: 607 SSIEVDGKCHEFLVADVSHVHSEDIYAAL 635



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 140/317 (44%), Gaps = 45/317 (14%)

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM-LREGLVPNHSTLPCAIIAA 250
           DA KLF EM  R+VVSW  +I GY++ G  +EA  +F  M + E + PN  TL  A  AA
Sbjct: 184 DARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAA 243

Query: 251 ANIAALGMGKSFHACAVKFLGKL-------------------------------DVFVGN 279
             +  LG+G++ H C V+  G++                               DV+   
Sbjct: 244 GQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWT 303

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
           S++S YAKCG +E++  +F ++  RN+V+W+ ++  Y+     +EAI  F  M   G+ P
Sbjct: 304 SMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEP 363

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399
              TL+ +L AC     ++ G   +    +     L P      +D+ ++ G    A   
Sbjct: 364 IDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRL 423

Query: 400 LYDLPFDPGIGFWKALLGGCQIHSNVE-----LGEFAARRILALDPEDVSSYVMLSNALS 454
             ++  D  +  W  ++    +H   E       EF    IL     D ++Y+ + +A S
Sbjct: 424 FSNME-DKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGIL----PDEATYIGVLSACS 478

Query: 455 VAGKWDNVSNIRREMKE 471
             G    VS  R   KE
Sbjct: 479 HGGL---VSEGRCHFKE 492



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 12/300 (4%)

Query: 182 CGLLKRERFEDALK-LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           C L    R   A   L Q     N      M+ G+ + G+   A+ LF  +LR+ L  + 
Sbjct: 73  CALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDA 132

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVF 298
            T+  A+ AAA  ++    ++ H  A K  F+G+  V  GN+L+  Y     + D+  +F
Sbjct: 133 RTIVFAVKAAATSSS--PTEAIHCVAFKRGFIGQ-SVLAGNALVHMYTSSMLLPDARKLF 189

Query: 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLV 357
           D++ +R++V+W  +I GYA+ G  +EA   F RM +   + PN VTL+    A    GL+
Sbjct: 190 DEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLL 249

Query: 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
             G +   Q  +E  G +       +VD+  + G    AKE    +P    +  W +++ 
Sbjct: 250 GLGRT-VHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIK-DVYSWTSMVS 307

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477
                 ++   E AA+    +   +V S+  +  A S A   D    I  +M   G+  +
Sbjct: 308 AYAKCGDL---ENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPI 364



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  ++     +  ++F E+P+ NVVS + ++  ++  +  +EAI +F+ M+   + 
Sbjct: 303 TSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVE 362

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLHAW---ATKVGLQSNVFVGSAILDLYIKLSSIEEA 162
           P + T  SV+ +   L  L++G  L+     + KV L  N  + +A +D++ K   +  A
Sbjct: 363 PIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPN--LSNAFIDMFAKCGDVGAA 420

Query: 163 TRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV----SWNAMIGGYSQT 218
           +R+F +  + NVVS+ TMI       + E+AL LFQE     ++    ++  ++   S  
Sbjct: 421 SRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHG 480

Query: 219 GRNEEAVNLFIEM-LREGLVPNHSTLPCAI 247
           G   E    F EM +  G+ P      C I
Sbjct: 481 GLVSEGRCHFKEMKIVYGIEPRAEHYACMI 510


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  288 bits (737), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 250/477 (52%), Gaps = 35/477 (7%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T  +S  S+    ++   +F  +   ++++   +I  F      E ++ LF  +L   
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG 305

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            R S  T   +IP  +    L+L   +H +  K G+  N  V +A   +Y KL+ I+ A 
Sbjct: 306 ERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLAR 365

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                                           LF E P + VV+WNAMI GY+Q G  E 
Sbjct: 366 H-------------------------------LFDESPEKTVVAWNAMISGYTQNGSTET 394

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A++LF EM++    PN  T+   + A A + +L  GK  H        + +++V  +L+ 
Sbjct: 395 AISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVD 454

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCG++ ++  +FD ++E+N VTWN +I GY  +G G EA++ +  M   G  P+ VT
Sbjct: 455 MYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVT 514

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLY 401
            L +L+AC+H GLV +G   F    + +   ++P  EHYACMVD+L RSG+ ++A EF+ 
Sbjct: 515 FLSVLYACSHAGLVGEGEEIFHN--MVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIK 572

Query: 402 DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
            +P +PG   W  LLG C IH + ++   A+ R+  LDP  V  YV+LSN  SV   +  
Sbjct: 573 KMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPK 632

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            ++IR+ +K++ + + PGC+ IE+    HVFV+GDR+H    +IYA L   T ++RE
Sbjct: 633 AASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMRE 689



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 167/371 (45%), Gaps = 40/371 (10%)

Query: 57  KFSSV---HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           KFS V    +VFD +P+ + V   T+I    K   ++++I LF  M+   +R    T  +
Sbjct: 155 KFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTA 214

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173
           V+P++  L++L +G  +   A K+G     +V + ++ LY K   +  A  +F   + P+
Sbjct: 215 VLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPD 274

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           +++Y                               NAMI G++  G  E +V LF E+L 
Sbjct: 275 LIAY-------------------------------NAMISGFTANGGTECSVKLFRELLF 303

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293
            G   + ST+   I   +    L +  S H   VK    L+  V  +  + Y K   ++ 
Sbjct: 304 SGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDL 363

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353
           +  +FD+  E+ +V WNA+I GY QNG  E AI  F+ M      PN VT+  +L AC  
Sbjct: 364 ARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQ 423

Query: 354 TGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411
            G +  G       K E+   L+P  Y    +VD+ ++ G   EA + L+D   +     
Sbjct: 424 LGSLSFGKWVHHLIKSEN---LEPNIYVSTALVDMYAKCGNISEAWQ-LFDSMSEKNTVT 479

Query: 412 WKALLGGCQIH 422
           W  ++ G  +H
Sbjct: 480 WNTMIFGYGLH 490



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 35/286 (12%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTFGSVIPSSTALE 122
           +F  VP  ++     ++  F+       +I L++ +    N+ P  FT+   + + +  +
Sbjct: 66  LFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDK 125

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L L   LHA +   G  SNVFVGSA++DLY K S +  A +VF+               
Sbjct: 126 HLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDG-------------- 168

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                            MP R+ V WN MI G  +    ++++ LF EM+ +G+  + ST
Sbjct: 169 -----------------MPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSST 211

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + AAA +  L +G      A+K       +V   LIS Y+KCG +  + L+F ++ 
Sbjct: 212 VTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRIN 271

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348
             +++ +NA+I G+  NG  E +++ F  +  +G R +  T++GL+
Sbjct: 272 RPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLI 317



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 4/197 (2%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL 101
           P + T   +  ++ ++      +FDE P+  VV+   +I  + +    E AI LF  M+ 
Sbjct: 345 PTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMK 404

Query: 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 161
               P+  T  +++ +   L  L+ GK +H       L+ N++V +A++D+Y K  +I E
Sbjct: 405 TEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISE 464

Query: 162 ATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQ 217
           A ++F+     N V++ TMI G        +ALKL+ EM H     + V++ +++   S 
Sbjct: 465 AWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSH 524

Query: 218 TGRNEEAVNLFIEMLRE 234
            G   E   +F  M+ +
Sbjct: 525 AGLVGEGEEIFHNMVNK 541


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 257/477 (53%), Gaps = 7/477 (1%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-- 103
           T  V    +++       +F +V + N      +I        Y  AI  +  ML L   
Sbjct: 50  TKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDP 109

Query: 104 -----IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
                I P  FTF  VI S + L   NLGKQ+HA   K G +SN+ + +A++D+Y K +S
Sbjct: 110 ESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCAS 169

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           + +A +VF+     + +S+ ++I G +   +   A  LF  MP+R +VSW AMI GY++ 
Sbjct: 170 LLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRL 229

Query: 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278
           G   +A+ +F +M   G+ P+  ++   + A A + AL +GK  H    +        + 
Sbjct: 230 GSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSIC 289

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N+L+  Y+KCG +  +  +FD++++ ++++W+ +I G A +G+  EAIE F+RM+   I 
Sbjct: 290 NALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIE 349

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           PNG+T LGLL AC H G   +G +YF     +     + EHY C+VD+L R+GR  +A +
Sbjct: 350 PNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALD 409

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
            +  +P  P    W +LL  C+ HSN+++   A   +  L+P+D  +YV+LSN  +   K
Sbjct: 410 VIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAK 469

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515
           WD VS +R+ +K K M + PG S I+I + V  FV+ D +   + +I+ +L   T  
Sbjct: 470 WDGVSRMRKLIKSKSMKKTPGSSLIDINNVVQEFVSWDDSKPFSRDIFWLLELLTSH 526


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 247/458 (53%), Gaps = 35/458 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF  +   ++V+  +II    ++     A+ +F  M    + P   T  S+  +     D
Sbjct: 226 VFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGD 285

Query: 124 LNLGKQLHAWATKVGLQ-SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               K LH +  + G    ++  G+AI+D+Y KLS+IE A R+F+               
Sbjct: 286 GRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFD--------------- 330

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHS 241
                            MP ++ VSWN +I GY Q G   EAV  +  M + EGL     
Sbjct: 331 ----------------SMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQG 374

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
           T    + A +++ AL  G   HA ++K    +DV+VG  LI  YAKCG + +++L+F+K+
Sbjct: 375 TFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKM 434

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
             R+   WNA+I G   +G G EA+  F RM+  GI+P+ VT + LL AC+H GLV++G 
Sbjct: 435 PRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGR 494

Query: 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           S+F   ++    +   +HYACM D+L R+G+  EA  F+ ++P  P    W ALLG C+I
Sbjct: 495 SFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRI 554

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NVE+G+ A++ +  LDPE+V  YV++SN  +  GKWD V  +R  ++ + + + PG S
Sbjct: 555 HGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWS 614

Query: 482 WIEIKSKVHVFVTGDRN--HHMNDEIYAVLRSCTEQIR 517
            IE+K  V+VF +G++   H  ++EI A LRS   +IR
Sbjct: 615 SIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIR 652



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 195/415 (46%), Gaps = 50/415 (12%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + S  ++VFDE+ + +V +   ++    +     EA+ LF RM+   +     T  SV+P
Sbjct: 118 RISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLP 177

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
               L D  L   +H +A K GL   +FV +A++D+Y KL  +EEA  VF          
Sbjct: 178 MCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHG-------- 229

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                                  M  R++V+WN++I G  Q G+   A+ +F  M   G+
Sbjct: 230 -----------------------MECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGV 266

Query: 237 VPNHSTLPCAIIAAANIAALGMG---KSFHACAVKFLG--KLDVFVGNSLISFYAKCGSM 291
            P+  TL   +  A+ IA  G G   KS H C V   G    D+  GN+++  YAK  ++
Sbjct: 267 SPDVLTL---VSLASAIAQGGDGRSAKSLH-CYVMRRGWDVDDIIAGNAIVDMYAKLSNI 322

Query: 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTLLGLLWA 350
           E +  +FD +  ++ V+WN +I GY QNG   EA+E +  M+ + G++    T + +L A
Sbjct: 323 EAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPA 382

Query: 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            +H G +++G    +   L     L  + Y   C++DL ++ G+  EA      +P    
Sbjct: 383 YSHLGALQQGMRMHA---LSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP-RRS 438

Query: 409 IGFWKALLGGCQIHSN--VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461
            G W A++ G  +H +    L  F+  +   + P+ V ++V L  A S AG  D 
Sbjct: 439 TGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHV-TFVSLLAACSHAGLVDQ 492



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 136/288 (47%), Gaps = 51/288 (17%)

Query: 78  TIIGRFAKQHHYEEAIYLFSRML--LLNIRPSEFTFGSVI---PSSTALEDLNLGKQLHA 132
           T+I  F++      A  L   +L      RP  FTF S+I   PS+ +        QLHA
Sbjct: 38  TLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNAS------AAQLHA 91

Query: 133 WATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
            A ++GL + +VF   +++  Y++   I E                              
Sbjct: 92  CALRLGLVRPSVFTSGSLVHAYLRFGRISE------------------------------ 121

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL----VPNHSTLPCAI 247
            A K+F EM  R+V +WNAM+ G  +  R  EAV LF  M+ EG+    V   S LP  +
Sbjct: 122 -AYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCV 180

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
           +    + AL M    H  AVK     ++FV N+LI  Y K G +E++  VF  +  R++V
Sbjct: 181 LLGDQVLALVM----HVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLV 236

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           TWN++I G  Q G+   A++ F+ MR +G+ P+ +TL+ L  A    G
Sbjct: 237 TWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGG 284



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 145/344 (42%), Gaps = 75/344 (21%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSS 118
           +  ++FD +P  + VS  T+I  + +     EA+  +  M     ++  + TF SV+P+ 
Sbjct: 324 AAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAY 383

Query: 119 TALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178
           + L  L  G ++HA + K+GL  +V+VG+ ++DLY K                       
Sbjct: 384 SHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAK----------------------- 420

Query: 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238
              CG     +  +A+ LF++MP R+   WNA+I G    G   EA+ LF  M +EG+ P
Sbjct: 421 ---CG-----KLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKP 472

Query: 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF-VGNSLISFYAKCGSMEDSLLV 297
           +H T    + A ++   +  G+SF           DV  V   ++        M D L  
Sbjct: 473 DHVTFVSLLAACSHAGLVDQGRSF----------FDVMQVTYDIVPIAKHYACMADML-- 520

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
                               + G+ +EA  F + M    I+P+      LL AC   G V
Sbjct: 521 -------------------GRAGQLDEAFNFIQNMP---IKPDSAVWGALLGACRIHGNV 558

Query: 358 EKGYSYFSQAKLEDPGMLKPE---HYACMVDLLSRSGRFKEAKE 398
           E G    SQ   E    L PE   +Y  M ++ ++ G++    E
Sbjct: 559 EMG-KVASQNLFE----LDPENVGYYVLMSNMYAKVGKWDGVDE 597


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 253/460 (55%), Gaps = 19/460 (4%)

Query: 44  IRTDSVSCGSESDKFSS---------------VHQVFDEVPDLNVVSATTIIGRFAKQHH 88
           +R  S+  G ES  F S                 +VFD + + +VVS  +II  + + + 
Sbjct: 94  VRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNR 153

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148
           +++ + LF  M  +N+R    T    I ++  L +  +G  L  +  + G+  ++++G+ 
Sbjct: 154 FKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNT 213

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           ++D+Y +   I+ A RVF      N+VS+  MI G  K      A KLF EMP R+V+SW
Sbjct: 214 LIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISW 273

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
            +MI GYS   ++ EAV LF EM+   + P+  T+  A+ A A++ +L  G++ H    K
Sbjct: 274 TSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK 333

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
              K DVFVGNSLI  Y KCG +E +L VF+ +  R+ V+W ++I G A NG  E A+  
Sbjct: 334 HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNV 393

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDL 386
           F++M   GI P   T +G+L AC H GLV+KG  +F    +E+   L PE  HY C+VDL
Sbjct: 394 FDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKS--MENTYRLAPEMKHYGCVVDL 451

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446
           L RSG    A  F+  +P  P +  W+ LL  C++H N+ L E  ++++L LDP +  +Y
Sbjct: 452 LCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNY 511

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           V+ S+  + + +WD+V  IR+ M+   + +    S IE++
Sbjct: 512 VLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 551



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 180/402 (44%), Gaps = 76/402 (18%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           H VF+++    ++    +I   +K     +AI+ ++ M    I+ S  TF  +  S   +
Sbjct: 26  HFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARV 85

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
            D+  G+ +   + K+G +S  FV +A++ +Y+    +  A +VF+     +VVS+ ++I
Sbjct: 86  SDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSII 145

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS 241
           CG  +  RF+  L LF+EM   NV +                               +  
Sbjct: 146 CGYYQFNRFKKVLDLFREMQAINVRA-------------------------------DSV 174

Query: 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGK----LDVFVGNSLISFYAKCGSMEDSLLV 297
           T+  AI A   ++   MG       VK++ +    +D+++GN+LI  Y + G ++ +  V
Sbjct: 175 TMMKAISATCFLSEWEMGDYL----VKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRV 230

Query: 298 FDKLTERNIVTWNAVICGYAQNG-------------------------------RGEEAI 326
           F ++ E+NIV+WNA+I GYA+ G                               +  EA+
Sbjct: 231 FYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAV 290

Query: 327 EFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMV 384
           + F+ M ++ ++P+ +T+   L AC H G ++ G +     +  D   +K + +    ++
Sbjct: 291 KLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHD---IKSDVFVGNSLI 347

Query: 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
           D+  + G  ++A +   D+     +  W +++ G  ++   E
Sbjct: 348 DMYCKCGVVEKALQVFNDMKTRDSVS-WTSIISGLAVNGFAE 388



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 132/276 (47%), Gaps = 9/276 (3%)

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
           +F ++    ++ WN MI G S++ R  +A++ +  M  +G+  +H T      + A ++ 
Sbjct: 28  VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSD 87

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           +  G+     ++K   +   FV N+LI  Y   G +  +  VFD + ER++V+WN++ICG
Sbjct: 88  VRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICG 147

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           Y Q  R ++ ++ F  M+   +R + VT++  + A       E G  Y  +  +++ G++
Sbjct: 148 YYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMG-DYLVKY-IDEHGVV 205

Query: 376 KPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR 434
              +    ++D+  R G    A    Y +  +  I  W A++ G     N+     AA++
Sbjct: 206 VDLYLGNTLIDMYGRRGMIDFAGRVFYQMK-EKNIVSWNAMIMGYAKVGNL----VAAKK 260

Query: 435 ILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREM 469
           +    P  DV S+  +    S+A +      + +EM
Sbjct: 261 LFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEM 296



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 38/71 (53%)

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           S+  +  VF+++    ++ WN +I G +++ R  +AI F+  M   GI+ + +T + L  
Sbjct: 21  SLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFK 80

Query: 350 ACNHTGLVEKG 360
           +C     V +G
Sbjct: 81  SCARVSDVRQG 91


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 155/460 (33%), Positives = 254/460 (55%), Gaps = 10/460 (2%)

Query: 50  SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF 109
           S GS  D      + FDE+ D NVVS  ++I  +A+  +  EA  LF  M    +   EF
Sbjct: 157 SAGSLGDS----RRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEF 212

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T  S++ + +A  +L  GK +H+     G + ++ + +A++D+Y K   +  A   F+  
Sbjct: 213 TLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMM 272

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
              N VS+T+M+C L KR   + A   F+++P ++++SWNAMI  Y Q GR  EA++L+ 
Sbjct: 273 PFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYN 332

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            M   GL P+  TL   + A   +  L  GK  H C         V + NSL+  YA+CG
Sbjct: 333 RMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCG 392

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++ ++ +F ++  +N+++WNA+I   A +GR ++A+ FF  M  +   P+ +T + LL 
Sbjct: 393 QVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLS 452

Query: 350 ACNHTGLVEKGYSYFSQAKL---EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFD 406
           ACNH GL+E G  YF   +      PG+   EHYACMVDLL R G+  +A + + D+P  
Sbjct: 453 ACNHGGLLEAGQYYFQAMRHVYNVKPGV---EHYACMVDLLGRGGQLAKAVDLIKDMPMR 509

Query: 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466
           P +  W ALLG C+IH ++++G+   +++L L+      +V++SN L    +W+++  +R
Sbjct: 510 PDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLR 569

Query: 467 REMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
           + M+E GM +  G S IE  S +H        H  +D++Y
Sbjct: 570 KLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDMY 609



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 186/423 (43%), Gaps = 70/423 (16%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q+FD +PD +     ++I  +   H  +EA+ L   M+   I P+EFT   ++ +   ++
Sbjct: 65  QLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQ 124

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
                   H    K+G    VFVG+A+L  Y    S+ ++ R F++  + NVVS+ +M  
Sbjct: 125 AWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM-- 182

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
                                        I GY+Q G   EA +LF  M R+GL+ +  T
Sbjct: 183 -----------------------------INGYAQAGNTREACSLFEGMRRQGLLADEFT 213

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG------------- 289
           L   + A +    L  GK  H+  +    ++D+ + N+L+  Y KCG             
Sbjct: 214 LVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMP 273

Query: 290 ------------------SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
                             S++ +   F+++ E++I++WNA+I  Y Q GR  EA++ + R
Sbjct: 274 FKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNR 333

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS--QAKLEDPGMLKPEHYACMVDLLSR 389
           M++ G+ P+  TL  +L AC   G +  G       +    +PG+     +  ++D+ +R
Sbjct: 334 MKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVAL---FNSLLDMYAR 390

Query: 390 SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYV 447
            G+   A     ++P    I  W A++G   +H   +  L  F +    A  P++++   
Sbjct: 391 CGQVDTAISLFSEMPSKNVIS-WNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVA 449

Query: 448 MLS 450
           +LS
Sbjct: 450 LLS 452



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 140/286 (48%), Gaps = 11/286 (3%)

Query: 193 ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252
           A +LF  +P  +   +N++I  Y  +   +EA+ L   M+R G++PN  TLP  + A A 
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 253 IAALGMGKSFHACAVK--FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
           + A       H   VK  F+G+  VFVGN+L+  YA  GS+ DS   FD++ +RN+V+WN
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQ--VFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWN 180

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           ++I GYAQ G   EA   FE MR  G+  +  TL+ LL+AC+  G +E G    S   L 
Sbjct: 181 SMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHL-LV 239

Query: 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEF 430
               +       +VD+  + G    A      +PF   +  W ++L      ++++    
Sbjct: 240 RGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVS-WTSMLCALAKRASID---- 294

Query: 431 AARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
           AAR      PE  + S+  + +     G++    ++   MK  G+ 
Sbjct: 295 AARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLA 340


>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
 gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
          Length = 554

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 158/467 (33%), Positives = 264/467 (56%), Gaps = 19/467 (4%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST 119
           S H VF ++   + +    +I   A+     ++I  F++MLL + RP   T+  ++ + T
Sbjct: 78  SAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACT 137

Query: 120 ALEDLNLGKQLHAWATKVGL-QSNVFVGSAILDLYIKL-----SSIEEATRVFEDTHNPN 173
           +   L  G+Q+H+     G   SNVF+ S +++ Y  +     +++  A +VF+D    N
Sbjct: 138 SSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERN 197

Query: 174 VVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233
           VV + +M+ G ++R   + A ++F EMP RNVVSW  MI GY++ G+ ++A+NLF +M +
Sbjct: 198 VVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRK 257

Query: 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHA-CAVKFLG---KLDVFVGNSLISFYAKCG 289
            G+  +   L  A+ A A +  L MG   H+     F+G   ++ V + N+LI  YA CG
Sbjct: 258 AGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCG 317

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI---RPNGVTLLG 346
            ++++  VF  + ER+ V+W ++I  +A+ G  +  +E F  M+  G    RP+G+T +G
Sbjct: 318 MIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIG 377

Query: 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLP 404
           +L AC+H GLV++G   F    ++  G +KP  EHY CMVDLLSR+G   EA+E +  +P
Sbjct: 378 VLCACSHAGLVDEGRQLFKDM-IQRWG-IKPRIEHYGCMVDLLSRAGFLDEAQELIATMP 435

Query: 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILA-LDPEDVSSYV-MLSNALSVAGKWDNV 462
             P    W ALLGGC+ + N EL    +++++A  DP+  + Y+ +L+   + A KW +V
Sbjct: 436 VKPNNAVWGALLGGCRFYRNAELASLVSQKLVAEPDPDKAAGYLSLLAQVYASAEKWQDV 495

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           + +R++M   G+ +  G SW++I    H  V GDR H     IY +L
Sbjct: 496 ATVRQKMVAMGVKKPAGQSWVQINEVFHDSVAGDRTHENTSSIYEML 542



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 46/287 (16%)

Query: 4   LLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQ 63
           LL  C SSLSL +  ++HS     L     +S   L +  +   +   G E    +S  +
Sbjct: 132 LLAACTSSLSLREGQQVHS---KVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARK 188

Query: 64  VFDEVP-------------------------------DLNVVSATTIIGRFAKQHHYEEA 92
           VFD++                                + NVVS TT+I  +AK    ++A
Sbjct: 189 VFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQA 248

Query: 93  IYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN----VFVGSA 148
           + LF +M    +   +    + + +   L DL +G  +H++     + SN    V + +A
Sbjct: 249 LNLFDQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNA 308

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV--- 205
           ++ +Y     I+EA  VF      + VS+T++I    K+   +  L++F+ M        
Sbjct: 309 LIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEA 368

Query: 206 ----VSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCAI 247
               +++  ++   S  G  +E   LF +M+ R G+ P      C +
Sbjct: 369 RPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMV 415


>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
 gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 160/468 (34%), Positives = 238/468 (50%), Gaps = 32/468 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           ++TD +   S+        +VFD++ + N+ S   +I  +A    + +A+ +F   L + 
Sbjct: 43  LQTDLLLVYSKCGVLQDARKVFDKMVERNMHSWNILIASYAHNCFFYDALGVFDSFLKMG 102

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            RP  FT   V  +   + D  LGK LH+W  ++G +  V VGS++LD Y K        
Sbjct: 103 FRPDHFTLPPVFKACAGIGDSYLGKMLHSWVIRIGFEEYVVVGSSVLDFYAK-------- 154

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                             CG L      DA + F  M  R+ V WN MI G  +     +
Sbjct: 155 ------------------CGGLV-----DAWRCFVNMSWRDSVVWNLMIVGLGKACFFRD 191

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK-FLGKLDVFVGNSLI 282
           A+  F +ML EG+  +  T+P  +        L  GK  H   VK  +   +V +GNSLI
Sbjct: 192 ALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKNQIFGCEVAIGNSLI 251

Query: 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV 342
             YAKCG + DS  VF  ++E N+VTW ++I  Y  +G+G EA+  F++M+  G +PN V
Sbjct: 252 DMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCGFQPNCV 311

Query: 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402
           T+  +L +C+H+GL+E+G   F    L+       EHYACMVDLL R G  +EA E + +
Sbjct: 312 TITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAEHYACMVDLLGRFGYLEEAFELIKN 371

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462
           +        W ALL GC +H N+E+GE AA  +  L+P + S+Y+ L +     G WD V
Sbjct: 372 MKSAATASVWGALLAGCLMHKNIEIGEIAAHCLFELEPRNSSNYIALCSMYDSLGIWDGV 431

Query: 463 SNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510
           S  R +M+E G+ + PGCSWI +  +VH F   D +H     IY  L 
Sbjct: 432 SRTRAKMRELGLVKTPGCSWITVAGRVHKFYQEDLSHPETQMIYETLH 479


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 158/453 (34%), Positives = 251/453 (55%), Gaps = 36/453 (7%)

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
           D + VS  +++  + +     +A+ L+  M +  +    FT  SV+ + T ++DL  G Q
Sbjct: 202 DRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQ 261

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
            HA   K G   N  VGS ++DLY K                          C L     
Sbjct: 262 FHAKLIKSGYHQNSHVGSGLIDLYSKCGG-----------------------CML----- 293

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYS-QTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248
             D  K+F E+ + ++V WN MI GYS     ++EA+  F ++   G  P+  +L C I 
Sbjct: 294 --DCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVIS 351

Query: 249 AAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
           A +N+++   G+  H  A+K  +    + V N+LI+ Y+KCG++ D+  +FD + E N V
Sbjct: 352 ACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTV 411

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367
           ++N++I GYAQ+G G +++  F+RM   G  P  +T + +L AC HTG VE G  YF+  
Sbjct: 412 SYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMM 471

Query: 368 KLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425
           K +    ++PE  H++CM+DLL R+G+  EA+  +  +PFDPG  FW ALLG C+IH NV
Sbjct: 472 KQKFG--IEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNV 529

Query: 426 ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEI 485
           EL   AA R+L LDP + + YVML+N  S  G+  + +++R+ M+++G+ + PGCSWIE+
Sbjct: 530 ELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEV 589

Query: 486 KSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
             ++H+FV  D  H M  +I   L     +I++
Sbjct: 590 NRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKK 622



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 175/347 (50%), Gaps = 13/347 (3%)

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
           F   + +  A  DL  GK LHA   K  + ++ ++ +  L LY K   +  A RVF+ TH
Sbjct: 11  FRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTH 70

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
           + NV S+ T+I    K    E A +LF EMP  + VS+N +I  Y++ G  + A  LF+E
Sbjct: 71  DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLE 130

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF--VGNSLISFYAKC 288
           M RE  +         II A  I  +G+ +  HA +V  +  LD +  VGN+LI+ Y+K 
Sbjct: 131 M-REAFLDMDGFTLSGIITACGI-NVGLIRQLHALSV--VTGLDSYVSVGNALITSYSKN 186

Query: 289 GSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           G ++++  +F  L+E R+ V+WN+++  Y Q+  G +A+E +  M + G+  +  TL  +
Sbjct: 187 GFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASV 246

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDLLSRSGRFKEAKEFLYDLPFD 406
           L A  +   +  G  +   AKL   G  +  H    ++DL S+ G        ++D   +
Sbjct: 247 LTAFTNVQDLLGGLQF--HAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISN 304

Query: 407 PGIGFWKALLGGCQIH---SNVELGEFAARRILALDPEDVSSYVMLS 450
           P +  W  ++ G  ++   S+  L  F   +++   P+D S   ++S
Sbjct: 305 PDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVIS 351



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 172/363 (47%), Gaps = 38/363 (10%)

Query: 62  HQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121
           HQ+FDE+P  + VS  T+I  +A++   + A  LF  M    +    FT   +I +    
Sbjct: 94  HQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGI- 152

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE-DTHNPNVVSYTTM 180
            ++ L +QLHA +   GL S V VG+A++  Y K   ++EA R+F   + + + VS+ +M
Sbjct: 153 -NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSM 211

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           +                  M HR                   +A+ L++EM   GL+ + 
Sbjct: 212 VVAY---------------MQHRE----------------GSKALELYLEMTVRGLIVDI 240

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS-MEDSLLVFD 299
            TL   + A  N+  L  G  FHA  +K     +  VG+ LI  Y+KCG  M D   VFD
Sbjct: 241 FTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFD 300

Query: 300 KLTERNIVTWNAVICGYA-QNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
           +++  ++V WN +I GY+      +EA+E F ++++ G RP+  +L+ ++ AC++     
Sbjct: 301 EISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPS 360

Query: 359 KGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417
           +G      A KL+ P      + A ++ + S+ G  ++AK     +P    + +   + G
Sbjct: 361 QGRQVHGLALKLDIPSNRISVNNA-LIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAG 419

Query: 418 GCQ 420
             Q
Sbjct: 420 YAQ 422



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 18/242 (7%)

Query: 4   LLCI---CRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSS 60
           L+C+   C +  S ++  ++H LA    I + + SV      A+      CG+  D    
Sbjct: 346 LVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNN----ALIAMYSKCGNLRD---- 397

Query: 61  VHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
              +FD +P+ N VS  ++I  +A+     ++++LF RML +   P+  TF SV+ +   
Sbjct: 398 AKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAH 457

Query: 121 LEDLNLGK-QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT-HNPNVVSYT 178
              +  GK   +    K G++      S ++DL  +   + EA R+ E    +P    ++
Sbjct: 458 TGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWS 517

Query: 179 TMICGLLKRERFEDALK----LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
            ++         E A+K    L Q  P  N   +  +   YS  GR ++A ++   M   
Sbjct: 518 ALLGACRIHGNVELAIKAANRLLQLDP-LNAAPYVMLANIYSDNGRLQDAASVRKLMRDR 576

Query: 235 GL 236
           G+
Sbjct: 577 GV 578


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  288 bits (736), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 153/442 (34%), Positives = 246/442 (55%), Gaps = 37/442 (8%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131
           N V+ T ++  + K     +A+ LF +M+   +    F F  ++ +  AL DL  GKQ+H
Sbjct: 257 NAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIH 316

Query: 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFE 191
           ++  K+GL+S V VG+ ++D Y+K +                               RFE
Sbjct: 317 SYCIKLGLESEVSVGTPLVDFYVKCA-------------------------------RFE 345

Query: 192 DALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251
            A + F+ +   N  SW+A+I GY Q+G+ + A+ +F  +  +G++ N         A +
Sbjct: 346 AARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACS 405

Query: 252 NIAALGMGKSFHACAVKFLGKLDVFVGNS-LISFYAKCGSMEDSLLVFDKLTERNIVTWN 310
            ++ L  G   HA A+K  G +    G S +IS Y+KCG ++ +   F  + + + V W 
Sbjct: 406 AVSDLICGAQIHADAIK-KGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWT 464

Query: 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370
           A+IC +A +G+  EA+  F+ M+ +G+RPN VT +GLL AC+H+GLV++G        + 
Sbjct: 465 AIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDS--MS 522

Query: 371 DPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428
           D   + P  +HY CM+D+ SR+G  +EA E +  LPF+P +  WK+LLGGC  H N+E+G
Sbjct: 523 DEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIG 582

Query: 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSK 488
             AA  I  LDP D ++YV++ N  ++AGKWD  +  R+ M E+ + +   CSWI +K K
Sbjct: 583 MIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGK 642

Query: 489 VHVFVTGDRNHHMNDEIYAVLR 510
           VH FV GDR+H   ++IY+ L+
Sbjct: 643 VHRFVVGDRHHPQTEQIYSKLK 664



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 188/407 (46%), Gaps = 46/407 (11%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS 117
           F+S  + FD++ D ++ S +TII  + ++   +EA+ LF RML L I P+   F ++I S
Sbjct: 142 FTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMS 201

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177
            T    L+LGKQ+H+   ++G  +N+ + + I ++Y+K                      
Sbjct: 202 FTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVK---------------------- 239

Query: 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
               CG L     + A     +M  +N V+   ++ GY++  RN +A+ LF +M+ EG+ 
Sbjct: 240 ----CGWL-----DGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVE 290

Query: 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297
            +       + A A +  L  GK  H+  +K   + +V VG  L+ FY KC   E +   
Sbjct: 291 LDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQA 350

Query: 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357
           F+ + E N  +W+A+I GY Q+G+ + A+E F+ +R  G+  N      +  AC+    +
Sbjct: 351 FESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDL 410

Query: 358 EKGYSYFSQA-KLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALL 416
             G    + A K      L  E  + M+ + S+ G+   A +    +   P    W A++
Sbjct: 411 ICGAQIHADAIKKGLVAYLSGE--SAMISMYSKCGQVDYAHQAFLTID-KPDTVAWTAII 467

Query: 417 GGCQIHSNVELGEFAARRIL------ALDPEDVSSYVMLSNALSVAG 457
                H       F A R+        + P  V +++ L NA S +G
Sbjct: 468 CAHAYHGKA----FEALRLFKEMQGSGVRPNAV-TFIGLLNACSHSG 509



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 95/196 (48%), Gaps = 5/196 (2%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +F +  Q F+ + + N  S + +I  + +   ++ A+ +F  +    +  + F + ++  
Sbjct: 343 RFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQ 402

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           + +A+ DL  G Q+HA A K GL + +   SA++ +Y K   ++ A + F     P+ V+
Sbjct: 403 ACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVA 462

Query: 177 YTTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
           +T +IC      +  +AL+LF+EM       N V++  ++   S +G  +E   +   M 
Sbjct: 463 WTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMS 522

Query: 233 RE-GLVPNHSTLPCAI 247
            E G+ P      C I
Sbjct: 523 DEYGVNPTIDHYNCMI 538



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 2/147 (1%)

Query: 221 NEEAVNLFIE-MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279
           N   V+ FI  M + G+  N  +          + AL  GK FH   ++ +   + F+ N
Sbjct: 72  NLREVHEFIRNMDKVGISINPRSYEYLFKMCGTLGALSDGKLFHN-RLQRMANSNKFIDN 130

Query: 280 SLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339
            ++  Y  C S   +   FDK+ ++++ +W+ +I  Y + GR +EA+  F RM   GI P
Sbjct: 131 CILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITP 190

Query: 340 NGVTLLGLLWACNHTGLVEKGYSYFSQ 366
           N      L+ +     +++ G    SQ
Sbjct: 191 NSSIFSTLIMSFTDPSMLDLGKQIHSQ 217



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 49  VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108
           +S  S+  +    HQ F  +   + V+ T II   A      EA+ LF  M    +RP+ 
Sbjct: 436 ISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNA 495

Query: 109 FTFGSVIPSSTALEDLNLGKQ-LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
            TF  ++ + +    +  GK+ L + + + G+   +   + ++D+Y +   ++EA  V  
Sbjct: 496 VTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIR 555

Query: 168 D-THNPNVVSYTTMICGLLKRERFEDAL----KLFQEMPHRNVVSWNAMIGGYSQTGRNE 222
                P+V+S+ +++ G       E  +     +F+  P  +  ++  M   Y+  G+ +
Sbjct: 556 SLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDP-LDSATYVIMFNLYALAGKWD 614

Query: 223 EAVNLFIEMLRE 234
           EA   F +M+ E
Sbjct: 615 EAAQ-FRKMMAE 625


>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 514

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 163/448 (36%), Positives = 241/448 (53%), Gaps = 39/448 (8%)

Query: 74  VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133
           V+    I R ++   ++ A+ L   M     R  E+T    + +S AL  L     LH+ 
Sbjct: 7   VAYNAAISRCSRAGLHQRALALLHEMRARGHRADEYTLPPAL-NSAALLRLP-ADALHSL 64

Query: 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193
             + GL +++ V +A++D Y KLS                               R   A
Sbjct: 65  LLRAGLAAHLHVANALVDAYAKLS-------------------------------RHGAA 93

Query: 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253
             +F EMP R+VVSW +++ G +++  ++ A+ ++ +M+  G+ P+   +  A+ + A  
Sbjct: 94  RAVFDEMPRRDVVSWTSLLTGLARSRSHDSALQVYRDMVAAGVGPDEFAVAAALSSCAGA 153

Query: 254 AALGMGKSFHACAVKFLGKLDVF--VGNSLISFYAKCGSMEDSLLVFD--KLTERNIVTW 309
            AL +G+S HA AV+    LD F  VGNSL+S YAK GS+ ++  VFD  ++   + +TW
Sbjct: 154 TALELGRSVHAAAVRL--ALDPFLSVGNSLVSMYAKTGSLGEAKKVFDATRVDRCDPITW 211

Query: 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369
            A+I GYAQNGRG E++E +  M  +G RP+ VT +GLL+AC+H GLV+ G ++F   + 
Sbjct: 212 TALIVGYAQNGRGRESLEIYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMQA 271

Query: 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429
           E       +HYACMVDLL R+GR  EA + L           WKALL  C+ H N EL E
Sbjct: 272 EHGIAPGADHYACMVDLLGRAGRLDEAMDLLNRSTTRLDATVWKALLAACRTHRNAELAE 331

Query: 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKV 489
            AA  +  LDP D   YVMLSN  S AG+W +V+ +R  MK +G+T+ PGCSW+      
Sbjct: 332 HAAAMVWRLDPTDAVPYVMLSNLYSRAGRWGDVARVRTSMKARGITKEPGCSWVAANGVT 391

Query: 490 HVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           H+F   DR H    E+Y  +   TE+IR
Sbjct: 392 HLFYVEDRRHPRAAEVYRKVEEMTERIR 419



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 58/276 (21%), Positives = 121/276 (43%), Gaps = 65/276 (23%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           +  +   VFDE+P  +VVS T+++   A+   ++ A+ ++  M+   + P EF   + + 
Sbjct: 89  RHGAARAVFDEMPRRDVVSWTSLLTGLARSRSHDSALQVYRDMVAAGVGPDEFAVAAALS 148

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH--NPNV 174
           S      L LG+ +HA A ++ L   + VG++++ +Y K  S+ EA +VF+ T     + 
Sbjct: 149 SCAGATALELGRSVHAAAVRLALDPFLSVGNSLVSMYAKTGSLGEAKKVFDATRVDRCDP 208

Query: 175 VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           +++T +I G                               Y+Q GR  E++ ++ +M+R 
Sbjct: 209 ITWTALIVG-------------------------------YAQNGRGRESLEIYADMVRS 237

Query: 235 GLVPNHSTLPCAIIAAANIAALGMGKS----------------FHACAVKFLGKLDVFVG 278
           G  P++ T    + A ++   +  G++                 +AC V  LG       
Sbjct: 238 GCRPDYVTFIGLLFACSHAGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLG------- 290

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTER-NIVTWNAVI 313
                   + G +++++ + ++ T R +   W A++
Sbjct: 291 --------RAGRLDEAMDLLNRSTTRLDATVWKALL 318


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 251/472 (53%), Gaps = 36/472 (7%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVF-DEVPDLNVVSATTI---IGRFAKQHHYEEAIY 94
           L  P ++   ++  S   +     +VF D   D+++  +  +   IG +++  + +EA+ 
Sbjct: 105 LNNPTLKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGIG-YSRNGYPKEALL 163

Query: 95  LFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYI 154
           L+  M+    +   F F   + + + L DL  G+ +HA   K     +  V +A+L LY 
Sbjct: 164 LYYEMVCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLY- 222

Query: 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
                       ED             C       FE+AL++F  MPHRN+VSWN++I G
Sbjct: 223 -----------SEDG------------C-------FEEALRMFDGMPHRNLVSWNSLIAG 252

Query: 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
             +     EA+  F  M  +G+  +  TL   +   A + ALG GK  HA  VK   K D
Sbjct: 253 LVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPD 312

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
             V NSL+  YAKCG+M+    VF+ +  +++ +WN +I GYA NGR  EA+E F+ M  
Sbjct: 313 APVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMIC 372

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +G  P+G+T + LL  C+H GL + G   F   K++       EHYAC+VD+L R+GR K
Sbjct: 373 SGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIK 432

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           EA E + ++PF P    W +LL  C++H NV L E  A+R+  L+P +  +YVMLSN  +
Sbjct: 433 EALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYA 492

Query: 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
            AG W++V  +R  M+++GMT+  GCSW++IKSK+H FV G  N   N   Y
Sbjct: 493 NAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEY 544



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 7/243 (2%)

Query: 11  SLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD 70
           S++L   S L  L     +  Q     +     +    +   SE   F    ++FD +P 
Sbjct: 181 SMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPH 240

Query: 71  LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            N+VS  ++I    K+    EAI  F  M    +  S  T  +++P    +  L  GK++
Sbjct: 241 RNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEI 300

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           HA   K   + +  V ++++D+Y K  +++   RVF      ++ S+ T+I G     R 
Sbjct: 301 HAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRM 360

Query: 191 EDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR--EGLVPNHSTLP 244
            +A++ FQEM       + +++ A++ G S  G  ++   LF EM++   G+ P      
Sbjct: 361 TEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLF-EMMKMDHGISPTVEHYA 419

Query: 245 CAI 247
           C +
Sbjct: 420 CLV 422


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 149/479 (31%), Positives = 256/479 (53%), Gaps = 35/479 (7%)

Query: 42  PAIRTDSVSCGSESDKFSSVHQVFDEVPDLN--VVSATTIIGRFAKQHHYEEAIYLFSRM 99
           P ++T  +S   +    +S  +VFDE        V    +I  ++    + +A+ LF +M
Sbjct: 91  PFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQM 150

Query: 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159
               +  +  T   +IP       L  G  LHA + + GL  ++ VG+ +L +Y++  S+
Sbjct: 151 RKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSV 210

Query: 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTG 219
           + A                                KLF  MP + +++WNAMI GY+Q G
Sbjct: 211 DFAR-------------------------------KLFDGMPEKGLITWNAMISGYAQNG 239

Query: 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG-KLDVFVG 278
                ++L+ +M   G+VP+  TL   + + A++ A   G+      ++  G   + F+ 
Sbjct: 240 LAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQ-RIELSGFGFNPFLK 298

Query: 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR 338
           N+LI+ YA+CG++  +  +FD +TE+N+++W A+I GY  +G+GE A++ F+ M  +   
Sbjct: 299 NALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDEL 358

Query: 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE 398
           P+G   + +L AC+H GL EKG  YF+  + +      PEHY+C+VDLL R+GR +EA++
Sbjct: 359 PDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARK 418

Query: 399 FLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458
            +  +  +P    W ALLG C+IH NVEL E A  +++  +P ++  YV+LSN  S AG 
Sbjct: 419 LIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGN 478

Query: 459 WDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
            + +  +R  M+E+ + + PGCS++E + ++H+F+ GDR H    EIY +L    + I+
Sbjct: 479 MEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIK 537



 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 189/378 (50%), Gaps = 36/378 (9%)

Query: 83  FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142
            A+Q H++EA+ L+ +ML     P+ FTF     S  +L     G QLH    K G +  
Sbjct: 31  LARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPE 90

Query: 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPN--VVSYTTMICGLLKRERFEDALKLFQEM 200
            FV ++++ +Y K S+I  A +VF++ H+     V Y  +I G     RF DA+ LF++M
Sbjct: 91  PFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQM 150

Query: 201 PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK 260
             +  VS NA                  + ML  GL+P            A    LG G 
Sbjct: 151 -RKEGVSVNA------------------VTML--GLIP----------VCAGPIHLGFGT 179

Query: 261 SFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNG 320
           S HAC+V+F    D+ VGN L++ Y +CGS++ +  +FD + E+ ++TWNA+I GYAQNG
Sbjct: 180 SLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNG 239

Query: 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380
                ++ + +M   GI P+ VTL+G+L +C H G    G     + +L   G   P   
Sbjct: 240 LAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFG-FNPFLK 298

Query: 381 ACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP 440
             ++++ +R G   +A+  ++D   +  +  W A++ G  +H   EL       +++ D 
Sbjct: 299 NALINMYARCGNLVKARA-IFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDE 357

Query: 441 -EDVSSYVMLSNALSVAG 457
             D +++V + +A S AG
Sbjct: 358 LPDGAAFVSVLSACSHAG 375



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 10/220 (4%)

Query: 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFH 263
              SWNA +   ++    +EA+NL+ +ML  G  PN  T P A  + A+++    G   H
Sbjct: 20  TTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLH 79

Query: 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK-LTERNI-VTWNAVICGYAQNGR 321
              +K   + + FV  SLIS Y KC ++  +  VFD+    RN+ V +NA+I GY+ N R
Sbjct: 80  GHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSR 139

Query: 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS---YFSQAKLEDPGMLKPE 378
             +A+  F +MR  G+  N VT+LGL+  C   G +  G+    +    +    G L   
Sbjct: 140 FSDAVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHACSVRFGLDGDLSVG 197

Query: 379 HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
           +  C++ +  R G    A++    +P + G+  W A++ G
Sbjct: 198 N--CLLTMYVRCGSVDFARKLFDGMP-EKGLITWNAMISG 234


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 248/468 (52%), Gaps = 37/468 (7%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFG 112
           ++ +  +    VF+ + + + +S   +I  +++      AI +FS+M   +++PS  TF 
Sbjct: 362 AKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFV 421

Query: 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP 172
           S++  S++   + L KQ+H    K G   +++ GS+++D+Y K S +E+A  VF   HN 
Sbjct: 422 SLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHN- 480

Query: 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232
                                         R++V WNAMI G +Q  + EEAV LF ++ 
Sbjct: 481 ------------------------------RDMVIWNAMIFGLAQNEQGEEAVKLFNQLQ 510

Query: 233 REGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292
             GL PN  T    +  A+ + ++  G+ FHA  +K     D  V N+LI  YAKCG ++
Sbjct: 511 VSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIK 570

Query: 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352
           +  L+F+    ++++ WN++I  YAQ+G+ EEA+  F  M   G+ PN VT +G+L AC 
Sbjct: 571 EGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACA 630

Query: 353 HTGLVEKGYSYFSQAKLE---DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI 409
           H GLV++G  +F   K +   +PG    EHYA +V+L  RSG+   AKEF+  +P +P  
Sbjct: 631 HAGLVDEGLRHFDFMKTKYAIEPG---TEHYASVVNLFGRSGKLHAAKEFIERMPIEPAA 687

Query: 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469
             W++LL  C +  NVE+G +A    L  DP D    V++SN  +  G W +   +R+ M
Sbjct: 688 AVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGM 747

Query: 470 KEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
              G+ + PG SWIE+  +VH F+   R H   D IY++L   T  ++
Sbjct: 748 DCAGVVKEPGYSWIEVMKEVHTFIARGREHPEADVIYSLLDELTSILK 795



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 153/297 (51%), Gaps = 35/297 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VFD +P  N V+ T +I  +++      A+ LF +M L  +RP  F   S + + +AL  
Sbjct: 171 VFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGF 230

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G+Q H +A ++ ++++  V +A++DLY K S                          
Sbjct: 231 LEGGRQTHGYAYRIAVETDASVINALIDLYCKCS-------------------------- 264

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                R   A KLF  M +RN+VSW  MI GY Q   + EA+ +F ++ +EG  P+    
Sbjct: 265 -----RLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPD--VF 317

Query: 244 PCAII--AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301
            CA I  +  ++AA+  G+  HA A+K   + D +V NSLI  YAKC  + ++  VF+ L
Sbjct: 318 ACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEAL 377

Query: 302 TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358
            E + +++NA+I GY++ G    AI+ F +MR   ++P+ +T + LL   +    +E
Sbjct: 378 AEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIE 434



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 171/364 (46%), Gaps = 40/364 (10%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI--RPSEFT 110
           S+  +     ++FD +P  N+VS  + I   A+    E+A+ LF+     +    P+EF 
Sbjct: 57  SKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFL 116

Query: 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170
             S + +      ++ G+Q+H  A ++GL  NV+VG+A+++LY K+  I+ A  VF    
Sbjct: 117 LASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVF---- 172

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230
                                DAL      P +N V+W A+I GYSQ G+   A+ LF +
Sbjct: 173 ---------------------DAL------PVKNPVTWTAVITGYSQIGQGGVALELFGK 205

Query: 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290
           M  +G+ P+   L  A+ A + +  L  G+  H  A +   + D  V N+LI  Y KC  
Sbjct: 206 MGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSR 265

Query: 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350
           +  +  +FD +  RN+V+W  +I GY QN    EA+  F ++   G +P+      +L +
Sbjct: 266 LSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNS 325

Query: 351 CNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP 407
           C     + +G   +++  +A LE    +K      ++D+ ++     EA+     L  D 
Sbjct: 326 CGSLAAIWQGRQVHAHAIKANLESDEYVKNS----LIDMYAKCEHLTEARAVFEALAEDD 381

Query: 408 GIGF 411
            I +
Sbjct: 382 AISY 385



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 198/407 (48%), Gaps = 38/407 (9%)

Query: 57  KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIP 116
           + S   ++FD + + N+VS TT+I  + +     EA+ +F ++     +P  F   S++ 
Sbjct: 265 RLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILN 324

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           S  +L  +  G+Q+HA A K  L+S+ +V ++++D+Y K   + EA  VFE     + +S
Sbjct: 325 SCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAIS 384

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
           Y  M                               I GYS+ G    A+++F +M    L
Sbjct: 385 YNAM-------------------------------IEGYSRLGDLAGAIDVFSKMRYCSL 413

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
            P+  T    +  +++ +A+ + K  H   VK    LD++ G+SLI  Y+K   +ED+  
Sbjct: 414 KPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKA 473

Query: 297 VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356
           VF+ +  R++V WNA+I G AQN +GEEA++ F +++++G+ PN  T + L+     + L
Sbjct: 474 VFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVA--STL 531

Query: 357 VEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
           V   +     A++   G     H +  ++D+ ++ G  KE +  L++      +  W ++
Sbjct: 532 VSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGR-LLFESTLGKDVICWNSM 590

Query: 416 LGGCQIHSNVELGEFAARRI--LALDPEDVSSYVMLSNALSVAGKWD 460
           +     H   E   +  R +    ++P  V ++V + +A + AG  D
Sbjct: 591 ISTYAQHGQAEEALYVFRMMGGTGVEPNYV-TFVGVLSACAHAGLVD 636



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 135/253 (53%), Gaps = 12/253 (4%)

Query: 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231
           P++     ++    K  R  DA +LF  MPH+N+VSW + I  ++Q G  E+AV LF   
Sbjct: 44  PDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAF 103

Query: 232 LRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
            R   G  PN   L  A+ A A   A+  G+  H  AV+     +V+VG +LI+ YAK G
Sbjct: 104 QRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVG 163

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
            ++ ++LVFD L  +N VTW AVI GY+Q G+G  A+E F +M ++G+RP+   L   + 
Sbjct: 164 CIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVS 223

Query: 350 ACNHTGLVEKG---YSYFSQAKLE-DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405
           AC+  G +E G   + Y  +  +E D  ++       ++DL  +  R   A++ L+D   
Sbjct: 224 ACSALGFLEGGRQTHGYAYRIAVETDASVINA-----LIDLYCKCSRLSLARK-LFDCME 277

Query: 406 DPGIGFWKALLGG 418
           +  +  W  ++ G
Sbjct: 278 NRNLVSWTTMIAG 290



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           HA AV      D+F+ N L+  Y+K G + D+  +FD++  +N+V+W + I  +AQ+G  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 323 EEAIEFFERMR--INGIRPNGVTLLGLLWACNHTGLVEKG 360
           E+A+  F   +    G  PN   L   L AC  +  V  G
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFG 133


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 251/472 (53%), Gaps = 36/472 (7%)

Query: 39  LETPAIRTDSVSCGSESDKFSSVHQVF-DEVPDLNVVSATTI---IGRFAKQHHYEEAIY 94
           L  P ++   ++  S   +     +VF D   D+++  +  +   IG +++  + +EA+ 
Sbjct: 106 LNNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIG-YSRNGYPKEALL 164

Query: 95  LFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYI 154
           L+  M+    +   F F   + + + L DL  G+ +HA   K     +  V +A+L LY 
Sbjct: 165 LYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLY- 223

Query: 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGG 214
                       ED             C       F++AL++F  MPHRNVVSWN++I G
Sbjct: 224 -----------SEDG------------C-------FDEALRVFDGMPHRNVVSWNSLIAG 253

Query: 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274
             +     EA+  F  M  +G+  +  TL   +   A + ALG GK  HA  VK   K D
Sbjct: 254 LVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPD 313

Query: 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334
             V NSL+  YAKCG+M+    VF+ +  +++ +WN +I GYA NGR  EA+E F+ M  
Sbjct: 314 APVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMIC 373

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394
           +G  P+G+T + LL  C+H GL + G   F   K++       EHYAC+VD+L R+GR K
Sbjct: 374 SGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIK 433

Query: 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454
           EA E + ++PF P    W +LL  C++H NV L E  A+R+  L+P +  +YVMLSN  +
Sbjct: 434 EALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYA 493

Query: 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIY 506
            AG W++V  +R  M+++GMT+  GCSW++IKSK+H FV G  N   N   Y
Sbjct: 494 NAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEY 545



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 144/338 (42%), Gaps = 41/338 (12%)

Query: 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQ 198
           L +N  +   ++ L+     ++EA RVFED                      ED      
Sbjct: 105 LLNNPTLKGKLITLFSVCRRVDEARRVFEDGG--------------------EDV----- 139

Query: 199 EMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258
           ++P      W AM  GYS+ G  +EA+ L+ EM+ +     +     A+ A +++  L  
Sbjct: 140 DLPES---VWVAMGIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQT 196

Query: 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318
           G++ HA  +K     D  V N+L+  Y++ G  +++L VFD +  RN+V+WN++I G  +
Sbjct: 197 GRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVK 256

Query: 319 NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF-----SQAKLEDPG 373
                EAIE F  M+  G+  + VTL  +L  C     +  G         S AK + P 
Sbjct: 257 KDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPV 316

Query: 374 MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV-ELGEFAA 432
           +        +VD+ ++ G     +     +     +  W  L+ G  I+  + E  E   
Sbjct: 317 L------NSLVDMYAKCGAMDYCRRVFNGMQ-GKDLTSWNTLITGYAINGRMTEAMESFQ 369

Query: 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470
             I +    D  +++ L +  S AG  D+   +   MK
Sbjct: 370 EMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMK 407



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 7/243 (2%)

Query: 11  SLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD 70
           S++L   S L  L     +  Q     +     +    +   SE   F    +VFD +P 
Sbjct: 182 SMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPH 241

Query: 71  LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130
            NVVS  ++I    K+    EAI  F  M    +  S  T  +++P    +  L  GK++
Sbjct: 242 RNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEI 301

Query: 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190
           HA   K   + +  V ++++D+Y K  +++   RVF      ++ S+ T+I G     R 
Sbjct: 302 HAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRM 361

Query: 191 EDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR--EGLVPNHSTLP 244
            +A++ FQEM       + +++ A++ G S  G  ++   LF EM++   G+ P      
Sbjct: 362 TEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLF-EMMKMDYGISPTVEHYA 420

Query: 245 CAI 247
           C +
Sbjct: 421 CLV 423


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 162/473 (34%), Positives = 258/473 (54%), Gaps = 38/473 (8%)

Query: 38  KLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97
           ++ T  IR   + CGS         +VFD++   +VVS T +I  +A+  + E+A  LF+
Sbjct: 299 RVATALIRM-YMGCGS----IEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFA 353

Query: 98  RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157
            M    I+P   T+  +I +  +  DL+L +++H+   + G  +++ V +A++ +Y K  
Sbjct: 354 TMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAK-- 411

Query: 158 SIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQ 217
                                   CG +K     DA ++F  M  R+VVSW+AMIG Y +
Sbjct: 412 ------------------------CGAIK-----DARQVFDAMSRRDVVSWSAMIGAYVE 442

Query: 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
            G  EEA   F  M R  + P+  T    + A  ++ AL +G   +  A+K      + V
Sbjct: 443 NGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPV 502

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI 337
           GN+LI+   K GS+E +  +F+ + +R++VTWN +I GY+ +G   EA++ F+RM     
Sbjct: 503 GNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERF 562

Query: 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLSRSGRFKEA 396
           RPN VT +G+L AC+  G VE+G  +FS   L+  G++   E Y CMVDLL R+G   EA
Sbjct: 563 RPNSVTFVGVLSACSRAGFVEEGRRFFSYL-LDGRGIVPTMELYGCMVDLLGRAGELDEA 621

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
           +  +  +P  P    W  LL  C+I+ N+++ E AA R L  +P D + YV LS+  + A
Sbjct: 622 ELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAA 681

Query: 457 GKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           G W+NV+ +R+ M+ +G+ +  GC+WIE++ K+H FV  DR+H    EIYA L
Sbjct: 682 GMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAEL 734



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 188/381 (49%), Gaps = 33/381 (8%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           I T  VS   +        QVFD +   +V +   +IG +AK    E+A  LF RM    
Sbjct: 199 IGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEG 258

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
            +P+  +F S++   +  E L  GK +HA     GL  +V V +A++ +Y+   SIE A 
Sbjct: 259 FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGAR 318

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
           RVF+                               +M  R+VVSW  MI GY++    E+
Sbjct: 319 RVFD-------------------------------KMKVRDVVSWTVMIRGYAENSNIED 347

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           A  LF  M  EG+ P+  T    I A A+ A L + +  H+  V+     D+ V  +L+ 
Sbjct: 348 AFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVH 407

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCG+++D+  VFD ++ R++V+W+A+I  Y +NG GEEA E F  M+ N + P+ VT
Sbjct: 408 MYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVT 467

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            + LL AC H G ++ G   ++QA   D     P   A ++++  + G  + A+ ++++ 
Sbjct: 468 YINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNA-LINMNVKHGSIERAR-YIFEN 525

Query: 404 PFDPGIGFWKALLGGCQIHSN 424
                +  W  ++GG  +H N
Sbjct: 526 MVQRDVVTWNVMIGGYSLHGN 546



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 189/403 (46%), Gaps = 42/403 (10%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           Q FD V +  VV+   II  +A+  H +EA  LF +M+   + PS  TF  V+ + ++  
Sbjct: 117 QTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPA 176

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LGK+ HA   KVG  S+  +G+A++ +Y+K  S++ A +VF+  +  +V ++  MI 
Sbjct: 177 GLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIG 236

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G                               Y+++G  E+A  LF  M +EG  PN  +
Sbjct: 237 G-------------------------------YAKSGDGEKAFQLFYRMQQEGFKPNRIS 265

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               +   +   AL  GK+ HA  +      DV V  +LI  Y  CGS+E +  VFDK+ 
Sbjct: 266 FLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMK 325

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            R++V+W  +I GYA+N   E+A   F  M+  GI+P+ +T + ++ AC  +  +     
Sbjct: 326 VRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLARE 385

Query: 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG----- 417
             SQ      G       A +V + ++ G  K+A++ ++D      +  W A++G     
Sbjct: 386 IHSQVVRAGFGTDLLVDTA-LVHMYAKCGAIKDARQ-VFDAMSRRDVVSWSAMIGAYVEN 443

Query: 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460
           GC          F   +   ++P DV +Y+ L NA    G  D
Sbjct: 444 GC---GEEAFETFHLMKRNNVEP-DVVTYINLLNACGHLGALD 482



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 38/348 (10%)

Query: 110 TFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169
           T+  +      L D  LGKQ+     + G Q N++     L+  IKL SI          
Sbjct: 63  TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYE----LNTLIKLHSI---------- 108

Query: 170 HNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFI 229
                       CG +   R     + F  + ++ VV+WNA+I GY+Q G  +EA  LF 
Sbjct: 109 ------------CGNMLEAR-----QTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFR 151

Query: 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289
           +M+ E + P+  T    + A ++ A L +GK FHA  +K     D  +G +L+S Y K G
Sbjct: 152 QMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGG 211

Query: 290 SMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349
           SM+ +  VFD L +R++ T+N +I GYA++G GE+A + F RM+  G +PN ++ L +L 
Sbjct: 212 SMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILD 271

Query: 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPG 408
            C+    +  G +  +Q    + G++     A  ++ +    G  + A+  ++D      
Sbjct: 272 GCSTPEALAWGKAVHAQCM--NTGLVDDVRVATALIRMYMGCGSIEGARR-VFDKMKVRD 328

Query: 409 IGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSSYVMLSNALS 454
           +  W  ++ G   +SN+E   G FA  +   + P+ + +Y+ + NA +
Sbjct: 329 VVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRI-TYIHIINACA 375


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 272/539 (50%), Gaps = 40/539 (7%)

Query: 3   QLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH 62
           + L   +S  S   L K+H+     LI T +     + T  + + +VS  +    F    
Sbjct: 29  KTLSALQSCKSTEDLKKIHA----QLIITGQIKDTFIATKTVESYAVSARNIDYAF---- 80

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VF  +   +  S TT+I  F +  + E+A+  +  M    +  ++FTF  V+ +     
Sbjct: 81  WVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRP 140

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
               G+ +H    KVG   +VF  +A++ +Y+K  SI +A  +F++  N NVV++ TMI 
Sbjct: 141 SYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMIT 200

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS-------------------------- 216
           G       E A +LF EMP RNV SWNA++GGYS                          
Sbjct: 201 GCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSM 260

Query: 217 -----QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271
                Q GR  EA+ LF EM+  G+  +   +   + A A I AL MG+  HA   +   
Sbjct: 261 ISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKL 320

Query: 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331
           + DVF+  +L+  YAKCG ++ +  VF+ +  +N+ +WNA++ G A +G G  A+E F++
Sbjct: 321 RNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQ 380

Query: 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391
           M   G+ PN +T + +L AC+H G VE+G+  F+Q   E     K EHY CMVD+L R G
Sbjct: 381 MESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQG 440

Query: 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451
              EAKE +  +P +P +  W ALL  C++H    +GE     I  L  ED   YV+LSN
Sbjct: 441 LINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSN 500

Query: 452 ALSVAGKWDNVSNIRREMKEKGM-TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
             +   +W+ V   R+ MK+ G+  ++PG S IE+ S VH F   DR H    E+  V+
Sbjct: 501 IFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVI 559


>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
          Length = 496

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 247/446 (55%), Gaps = 11/446 (2%)

Query: 72  NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS--EFTFGSVI------PSSTALED 123
           +VVS T+ I R A+Q     A      M+     P+  + T  +V+      PSS     
Sbjct: 31  DVVSWTSTISRAARQGDLHAAAASLCAMVSSPAAPAPNDVTLLTVLSACADSPSSPLASP 90

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L L   LHA A K+   S++ + + +   Y+       A ++F+     +VV+Y TMI G
Sbjct: 91  LAL--TLHARALKL-FPSHLLLSTCLARFYLASRLPHLALQLFDSMPVRSVVTYNTMISG 147

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
           L++    + A ++F  MP  + VSW A+I G+ + GR++EA++ F  ML +G+  ++ TL
Sbjct: 148 LMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITL 207

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A A + ALG+G   H   ++   + +V V NSLI  YA+CG +  +  VF  + +
Sbjct: 208 VAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRK 267

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           R +V+WN++I G+A NGR  +AIE FE MR  G +P+ VTL G+L AC+H GL E G  Y
Sbjct: 268 RTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRY 327

Query: 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHS 423
           +     E     + EHY C+VDLL R+GR  EA   +  +P  P      ALL GC+ H 
Sbjct: 328 YDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRTHG 387

Query: 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483
           N+++ E   + +  LDP+  ++YV+LSN  +  GKWD    +R  MK +G+ + PG S +
Sbjct: 388 NLDMAEQMMQHLFELDPQGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSTV 447

Query: 484 EIKSKVHVFVTGDRNHHMNDEIYAVL 509
           EI   VH FV+GD++H +  EI  +L
Sbjct: 448 EIDGDVHEFVSGDQSHPLAGEIGQML 473



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 4/176 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
           +VFD +P  + VS T +I  F K   ++EAI  F  MLL  +     T  +V+ +   + 
Sbjct: 159 EVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLVAVVSACAEVG 218

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
            L LG  +H    +  L+ NV V ++++D+Y +   +  A +VF       VVS+ +MI 
Sbjct: 219 ALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIV 278

Query: 183 GLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234
           G     R  DA++LF+EM  +    + V+   ++   S  G  E  +  +  M  E
Sbjct: 279 GFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTE 334


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 159/475 (33%), Positives = 263/475 (55%), Gaps = 45/475 (9%)

Query: 53   SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYE----EAIYLFSRMLLLNIRPSE 108
            +E+D  +   +VF ++P+ + VS  + IG  AK   YE    +A+  F  M+    RP+ 
Sbjct: 603  AETDSINECQKVFFQMPEYDQVSWNSFIGALAK---YEASVLQALKYFLEMMQAGWRPNR 659

Query: 109  FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             TF +++ + ++   L LG Q+HA   K  +  +  + +A+L  Y K             
Sbjct: 660  VTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKC------------ 707

Query: 169  THNPNVVSYTTMICGLLKRERFEDALKLFQEMP-HRNVVSWNAMIGGYSQTGRNEEAVNL 227
                               E+ ED   +F  M   R+ VSWN+MI GY  +G   +A++L
Sbjct: 708  -------------------EQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDL 748

Query: 228  FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
               M++ G   +  T    + A A++A L  G   HACAV+   + DV VG++L+  YAK
Sbjct: 749  VWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAK 808

Query: 288  CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
            CG ++ +   F+ +  RNI +WN++I GYA++G G++A++ F RM+ +G  P+ VT +G+
Sbjct: 809  CGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGV 868

Query: 348  LWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPF 405
            L AC+H GLV++GY +F    + +   L P  EH++CMVDLL R+G  K+ ++F+  +P 
Sbjct: 869  LSACSHVGLVDEGYKHFKS--MGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPM 926

Query: 406  DPGIGFWKALLGGC--QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
            DP I  W+ +LG C      N ELG+ AA+ ++ L+P++  +YV+LSN  +  G W++V 
Sbjct: 927  DPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVV 986

Query: 464  NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
              R  M++  + +  GCSW+ +K  VH+FV GD+ H   ++IY  L+    +IR+
Sbjct: 987  EARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRD 1041



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 176/366 (48%), Gaps = 41/366 (11%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF  +P  + VS  ++I        +EEA+  F  M    + PS F+  S + S ++L  
Sbjct: 513 VFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGW 572

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L LG+Q+H    K GL  +V V +A+L LY +  SI E  +VF                 
Sbjct: 573 LTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVF----------------- 615

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNE-EAVNLFIEMLREGLVPNHST 242
                        FQ MP  + VSWN+ IG  ++   +  +A+  F+EM++ G  PN  T
Sbjct: 616 -------------FQ-MPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVT 661

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
               + A ++ + LG+G   HA  +K+    D  + N+L++FY KC  MED  ++F +++
Sbjct: 662 FINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMS 721

Query: 303 E-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361
           E R+ V+WN++I GY  +G   +A++    M   G + +G T   +L AC     +E+G 
Sbjct: 722 ERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGM 781

Query: 362 SYFS---QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
              +   +A LE   ++     + +VD+ ++ G+   A  F   +P    I  W +++ G
Sbjct: 782 EVHACAVRACLESDVVVG----SALVDMYAKCGKIDYASRFFELMPV-RNIYSWNSMISG 836

Query: 419 CQIHSN 424
              H +
Sbjct: 837 YARHGH 842



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 141/291 (48%), Gaps = 46/291 (15%)

Query: 117 SSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
           +S++L D N    LH    K G   +VF  + ++++Y+++                N+VS
Sbjct: 152 TSSSLYDAN---HLHLQLYKTGFTDDVFFCNTLINIYVRIG---------------NLVS 193

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                           A KLF EMP +N+VSW+ +I GY+Q    +EA +LF  ++  GL
Sbjct: 194 ----------------ARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGL 237

Query: 237 VPNHSTLPCAIIAAANIAALG--MGKSFHACAVKFLGKLDVFVGNSLISFYAKC-GSMED 293
           +PNH  +  A+ A     + G  +G   HA   K     D+ + N L+S Y+ C GS++D
Sbjct: 238 LPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDD 297

Query: 294 SLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI----RPNGVTLLGLLW 349
           +  VFD++  RN VTWN++I  Y + G    A + F  M++ G+    RPN  TL  L+ 
Sbjct: 298 AHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVT 357

Query: 350 ACNHTGLVEKGYSYFSQ--AKLEDPGMLKPEHY-ACMVDLLSRSGRFKEAK 397
           A     L + G     Q   ++E  G L+  +  + +V+  +R G    AK
Sbjct: 358 AA--CSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAK 406



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 152/306 (49%), Gaps = 42/306 (13%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F ++ D N V+   ++   A+QH  EEA  +F  M  L    SE     V+  ST  E 
Sbjct: 408 IFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSE---SLVVLLSTFTEF 464

Query: 124 LNL------GKQLHAWATKVGL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS 176
            NL      G+++HA+  + GL  + + +G+A++++Y K ++I+ A  VF          
Sbjct: 465 SNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVF---------- 514

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236
                                Q MP ++ VSWN+MI G     R EEAV+ F  M R G+
Sbjct: 515 ---------------------QLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGM 553

Query: 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296
           VP++ ++   + + +++  L +G+  H    K+   LDV V N+L++ YA+  S+ +   
Sbjct: 554 VPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQK 613

Query: 297 VFDKLTERNIVTWNAVICGYAQ-NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
           VF ++ E + V+WN+ I   A+      +A+++F  M   G RPN VT + +L A +   
Sbjct: 614 VFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFS 673

Query: 356 LVEKGY 361
           ++  G+
Sbjct: 674 VLGLGH 679



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 158/315 (50%), Gaps = 39/315 (12%)

Query: 55  SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL----LNIRPSEFT 110
           S      H+VFDE+   N V+  +II  + ++     A  LFS M +    LN+RP+E+T
Sbjct: 292 SGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYT 351

Query: 111 FGSVIPSSTALED--LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168
             S++ ++ +L D  L L +Q+     K G   +++VGSA+++ + +   ++ A  +F+ 
Sbjct: 352 LCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQ 411

Query: 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228
            ++ N V+   ++ GL ++ + E+A K+F+EM                            
Sbjct: 412 MYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKD-------------------------L 446

Query: 229 IEMLREGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLD--VFVGNSLISFY 285
           +E+  E LV   ST        +N+      G+  HA   +  G +D  + +GN+L++ Y
Sbjct: 447 VEINSESLVVLLSTFT----EFSNLKEGKRKGQEVHAYLFRS-GLVDARISIGNALVNMY 501

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
            KC +++++  VF  +  ++ V+WN++I G   N R EEA+  F  M+ NG+ P+  +++
Sbjct: 502 GKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVI 561

Query: 346 GLLWACNHTGLVEKG 360
             L +C+  G +  G
Sbjct: 562 STLSSCSSLGWLTLG 576



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 51/303 (16%)

Query: 60  SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS-- 117
           S  ++FDE+P  N+VS + +I  + +    +EA  LF  ++   + P+ F  GS + +  
Sbjct: 193 SARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQ 252

Query: 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS-SIEEATRVFEDTHNPNVVS 176
                 + LG Q+HA+  K+   S++ + + ++ +Y   S SI++A RVF+         
Sbjct: 253 QCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFD--------- 303

Query: 177 YTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG- 235
                                 E+  RN V+WN++I  Y + G    A  LF  M  EG 
Sbjct: 304 ----------------------EIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGV 341

Query: 236 ---LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-------DVFVGNSLISFY 285
              L PN  TL   + AA ++A  G+         + L ++       D++VG++L++ +
Sbjct: 342 ELNLRPNEYTLCSLVTAACSLADCGL-----VLLEQMLTRIEKSGFLRDLYVGSALVNGF 396

Query: 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345
           A+ G M+ + ++F ++ +RN VT N ++ G A+  +GEEA + F+ M+ + +  N  +L+
Sbjct: 397 ARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVEINSESLV 455

Query: 346 GLL 348
            LL
Sbjct: 456 VLL 458


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 280/520 (53%), Gaps = 16/520 (3%)

Query: 3   QLLCICRSSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH 62
           +L+ +  S  S+ ++ + H+      + +   S  KL   A      +C S     S  H
Sbjct: 18  RLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLA------ACAS----LSYAH 67

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHH--YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120
           ++FD++P  ++    T+I   +   H  +   I   S    L + P+ ++F     +   
Sbjct: 68  KLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGN 127

Query: 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180
              +  G+Q+   A KVGL++NVFV +A++ +Y K   + E+ +VF+   + ++ S+ T+
Sbjct: 128 GLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTL 187

Query: 181 ICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240
           I   +       A +LF  M  R+VVSW+ +I GY Q G   EA++ F +ML+ G  PN 
Sbjct: 188 IAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNE 247

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED-SLLVFD 299
            TL  A+ A +N+ AL  GK  HA   K   K++  +  S+I  YAKCG +E  S + F+
Sbjct: 248 YTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFE 307

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
              ++ +  WNA+I G+A +G   EAI  FE+M++  I PN VT + LL AC+H  +VE+
Sbjct: 308 HKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEE 367

Query: 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419
           G  YF     +     + EHY CMVDLLSRSG  KEA++ +  +P  P +  W ALL  C
Sbjct: 368 GKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNAC 427

Query: 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE--KGMTRV 477
           +I+ ++E G    R I  +DP  +  +V+LSN  S +G+W N + I RE  E  +   ++
Sbjct: 428 RIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRW-NEARILREKNEISRDRKKI 486

Query: 478 PGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517
           PGCS IE+K   H F+ GD++H  + EIY+ L   T +++
Sbjct: 487 PGCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLK 526


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 155/475 (32%), Positives = 264/475 (55%), Gaps = 32/475 (6%)

Query: 44  IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103
           + T  V+  S  +   + H +FD++P  N+     +I  +A    +E AI L+ +ML   
Sbjct: 95  LATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYG 154

Query: 104 IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           ++P  FT   V+ + +AL  +  G+ +H    + G + +VFVG+A++D+Y K        
Sbjct: 155 LKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAK-------- 206

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223
                             CG +      DA  +F ++  R+ V WN+M+  Y+Q G  +E
Sbjct: 207 ------------------CGCVV-----DARHVFDKIVDRDAVLWNSMLAAYAQNGHPDE 243

Query: 224 AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283
           +++L  EM  +G+ P  +TL   I ++A+IA L  G+  H    +   + +  V  +LI 
Sbjct: 244 SLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALID 303

Query: 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT 343
            YAKCGS++ + ++F++L E+ +V+WNA+I GYA +G   EA++ FERM +   +P+ +T
Sbjct: 304 MYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERM-MKEAQPDHIT 362

Query: 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403
            +G L AC+   L+++G + ++    +       EHY CMVDLL   G+  EA + +  +
Sbjct: 363 FVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQM 422

Query: 404 PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVS 463
              P  G W ALL  C+ H NVEL E A  +++ L+P+D  +YV+L+N  + +GKW+ V+
Sbjct: 423 DVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVA 482

Query: 464 NIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518
            +R+ M +KG+ +   CSWIE+K+KV+ F++GD +H  +  IYA L+     +RE
Sbjct: 483 RLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMRE 537



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 167/344 (48%), Gaps = 44/344 (12%)

Query: 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF 166
           + + + S++ S  + + L  GKQLHA   ++G+  N+ + + +++ Y             
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFY------------- 103

Query: 167 EDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN 226
                         +C  L+     +A  LF ++P  N+  WN +I  Y+  G +E A++
Sbjct: 104 -------------SVCNSLR-----NAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAIS 145

Query: 227 LFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286
           L+ +ML  GL P++ TLP  + A + ++ +G G+  H   ++   + DVFVG +L+  YA
Sbjct: 146 LYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYA 205

Query: 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346
           KCG + D+  VFDK+ +R+ V WN+++  YAQNG  +E++     M   G+RP   TL+ 
Sbjct: 206 KCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVT 265

Query: 347 LL-----WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
           ++      AC   G    G+ +    +  D      +    ++D+ ++ G  K A   L+
Sbjct: 266 VISSSADIACLPHGREIHGFGWRHGFQYND------KVKTALIDMYAKCGSVKVAC-VLF 318

Query: 402 DLPFDPGIGFWKALLGGCQIHS-NVELGEFAARRILALDPEDVS 444
           +   +  +  W A++ G  +H   VE  +   R +    P+ ++
Sbjct: 319 ERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEAQPDHIT 362


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 164/471 (34%), Positives = 255/471 (54%), Gaps = 43/471 (9%)

Query: 48  SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107
           SV C  E++       VF ++   ++VS T +I  + K    E+A+  ++ M    + P 
Sbjct: 343 SVGCWDEAE------MVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPD 396

Query: 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167
           E T  SV+ +   L  L+ G  LH +A + GL S V V ++++D+Y K   I++A     
Sbjct: 397 EITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKA----- 451

Query: 168 DTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL 227
                                     L++F  +P++NV+SW ++I G     R+ EA+  
Sbjct: 452 --------------------------LEVFHRIPNKNVISWTSIILGLRLNYRSFEALFF 485

Query: 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287
           F +M+   L PN  TL   + A A I AL  GK  HA A++     D F+ N+L+  Y +
Sbjct: 486 FQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVR 544

Query: 288 CGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347
           CG ME +   F+   E+++ +WN ++ GYAQ G+G  A+E F +M  + + P+ +T   L
Sbjct: 545 CGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSL 603

Query: 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPF 405
           L AC+ +G+V  G  YF    +E    + P  +HYA +VDLL R+GR ++A EF+  +P 
Sbjct: 604 LCACSRSGMVTDGLEYFES--MEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPI 661

Query: 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465
           DP    W ALL  C+I+ NVELGE AA+ I  +D + V  Y++L N  + +GKWD V+ +
Sbjct: 662 DPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARV 721

Query: 466 RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           R+ M+E  +T  PGCSW+E+  +VH F+TGD  H    EI AVL    E++
Sbjct: 722 RKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKM 772



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 196/390 (50%), Gaps = 38/390 (9%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           VF ++ + ++ S   ++G +AK  +++EA+ L+ RML + IRP  +TF  V+ +   L D
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  G+++H    + G +S+V V +A++ +Y+K   I  A  VF+                
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFD---------------- 254

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHST 242
                           MP R+ +SWNAMI GY +     E + LF  M+RE  V P+  T
Sbjct: 255 ---------------RMPRRDRISWNAMISGYFENDVCLEGLRLFF-MMREFFVDPDLMT 298

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   I A   +    +G+  H   +K     +V V NSLI  ++  G  +++ +VF K+ 
Sbjct: 299 MTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +++V+W A+I GY +NG  E+A+E +  M   G+ P+ +T+  +L AC   GL++KG  
Sbjct: 359 FKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIM 418

Query: 363 YFSQAKLEDPGMLKPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
               A  +  G+      A  ++D+ S+     +A E  + +P +  +  W +++ G ++
Sbjct: 419 LHEFA--DRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRL 475

Query: 422 -HSNVELGEFAARRILALDPEDVSSYVMLS 450
            + + E   F  + IL+L P  V+   +LS
Sbjct: 476 NYRSFEALFFFQQMILSLKPNSVTLVSVLS 505



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 183/418 (43%), Gaps = 51/418 (12%)

Query: 6   CICRSSLSLNKLSK---LHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVH 62
           C+ R+   L  L++   +H     Y  E+    V      A+ T  V CG   D FS+  
Sbjct: 200 CVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVN-----ALITMYVKCG---DIFSA-R 250

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122
            VFD +P  + +S   +I  + +     E + LF  M    + P   T  SVI +  AL 
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMIC 182
           D  LG+++H +  K G  + V V ++++ ++  +   +EA  VF      ++VS+T MI 
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMIS 370

Query: 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242
           G                               Y + G  E+AV  +  M  EG+VP+  T
Sbjct: 371 G-------------------------------YEKNGLPEKAVETYTIMEHEGVVPDEIT 399

Query: 243 LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302
           +   + A A +  L  G   H  A +      V V NSLI  Y+KC  ++ +L VF ++ 
Sbjct: 400 IASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP 459

Query: 303 ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362
            +N+++W ++I G   N R  EA+ FF++M I  ++PN VTL+ +L AC   G +  G  
Sbjct: 460 NKNVISWTSIILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKE 518

Query: 363 YFSQAKLEDPGM--LKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418
             + A     G     P     ++D+  R GR + A         D  +  W  LL G
Sbjct: 519 IHAHALRTGLGFDGFLPN---ALLDMYVRCGRMEPAWNQFNSCEKD--VASWNILLTG 571



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/266 (26%), Positives = 130/266 (48%), Gaps = 31/266 (11%)

Query: 90  EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAI 149
           E+A+     M  L +   E T+ +++         + G ++H++ +K   +  V +G+A+
Sbjct: 76  EKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNAL 135

Query: 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWN 209
           L ++++   + EA  VF                                +M  R++ SWN
Sbjct: 136 LSMFVRFGDLVEAWYVF-------------------------------GKMAERDLFSWN 164

Query: 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269
            ++GGY++ G  +EA+NL+  ML  G+ P+  T PC +     +  L  G+  H   +++
Sbjct: 165 VLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY 224

Query: 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFF 329
             + DV V N+LI+ Y KCG +  + LVFD++  R+ ++WNA+I GY +N    E +  F
Sbjct: 225 GFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLF 284

Query: 330 ERMRINGIRPNGVTLLGLLWACNHTG 355
             MR   + P+ +T+  ++ AC   G
Sbjct: 285 FMMREFFVDPDLMTMTSVISACEALG 310


>gi|357150678|ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 491

 Score =  287 bits (735), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 147/388 (37%), Positives = 226/388 (58%), Gaps = 9/388 (2%)

Query: 128 KQLHAWATKVGLQ---SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184
           +Q+H    K GL    S V+  +++  +Y +   + +A +VF+      VVS+  ++ G 
Sbjct: 85  EQIHTLLVKSGLPRSVSGVYASTSLARVYARHGRLADARKVFDGMPETTVVSWNVLLDGF 144

Query: 185 LKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR-EGLVPNHSTL 243
           ++    + A +LF EM  RNVVSWN ++ G+++ GR +EAV LF+EM    GLVP+ +T+
Sbjct: 145 VRAGDLDAAWELFVEMTERNVVSWNTVMVGFARLGRAQEAVELFVEMTTVYGLVPDEATM 204

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A  NI  LG+G+S H   ++    LD  +G  LI+ Y +CGSM  + L F  +T 
Sbjct: 205 VGFVSAVRNIGLLGLGRSAHGYVIRREFSLDGALGVGLINMYTRCGSMTAAYLCFSSVTS 264

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363
           +N+  W + I G+A +G  + A+  F  MR  GI PN VT + +L AC+H GLV++G+ Y
Sbjct: 265 KNVEHWTSAIGGFAAHGHPDMALRLFAEMRELGIEPNDVTFVAVLNACSHGGLVDEGFKY 324

Query: 364 FSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI 421
           F+  +      ++P  +HY C+VDLL R+G  +EA      LP DPG   W +LL  CQ 
Sbjct: 325 FNMMRKMG---IRPSIQHYGCLVDLLGRAGFLEEAFNLASSLPKDPGFVTWSSLLAACQT 381

Query: 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481
           H NV++ E AA+++   +P   SSYV+LSNA + AG+W+++   R  M+     + PG S
Sbjct: 382 HGNVDMAEVAAQKLADAEPNHGSSYVLLSNAYARAGQWEDLKRTRSRMEAHRAVKKPGLS 441

Query: 482 WIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           WIE+   VH F T D++H  N  IY +L
Sbjct: 442 WIEVDGSVHSFGTADKSHTENKGIYQML 469



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 5/190 (2%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML-LLNIRPSEFTFGSVIPSSTAL 121
           ++F E+ + NVVS  T++  FA+    +EA+ LF  M  +  + P E T    + +   +
Sbjct: 155 ELFVEMTERNVVSWNTVMVGFARLGRAQEAVELFVEMTTVYGLVPDEATMVGFVSAVRNI 214

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L LG+  H +  +     +  +G  ++++Y +  S+  A   F    + NV  +T+ I
Sbjct: 215 GLLGLGRSAHGYVIRREFSLDGALGVGLINMYTRCGSMTAAYLCFSSVTSKNVEHWTSAI 274

Query: 182 CGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV 237
            G       + AL+LF EM       N V++ A++   S  G  +E    F  M + G+ 
Sbjct: 275 GGFAAHGHPDMALRLFAEMRELGIEPNDVTFVAVLNACSHGGLVDEGFKYFNMMRKMGIR 334

Query: 238 PNHSTLPCAI 247
           P+     C +
Sbjct: 335 PSIQHYGCLV 344


>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
 gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  287 bits (734), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 245/421 (58%), Gaps = 2/421 (0%)

Query: 99  MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158
           MLL    P+E TF  + P+  +   L  GK +H    K G   +V+  +A++D+Y KL  
Sbjct: 1   MLLKGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGV 60

Query: 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218
           +  A +VF++    ++ ++ ++I G  +    E AL+LF+ MP R+VVSW  MI GYSQ 
Sbjct: 61  LMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQN 120

Query: 219 GRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277
           G   +A+ +F++M ++  V PN  T+     A A + AL +G+   + A       +++V
Sbjct: 121 GMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYV 180

Query: 278 GNSLISFYAKCGSMEDSLLVFDKLTER-NIVTWNAVICGYAQNGRGEEAIEFFERMRING 336
            N+L+  YA+CG ++ +  VF+++ +R N+ +WN+++ G A +GR  EA++ +++M   G
Sbjct: 181 SNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEG 240

Query: 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA 396
           I P+ VT +GL+ AC H GLV KG+  F   +     + K EHY CMVDLL R+G  +EA
Sbjct: 241 IEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEA 300

Query: 397 KEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456
            + +  +P  P    W  LLG C  HSNVE  E AA  +  ++P +  +YV+L N  + A
Sbjct: 301 YDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNIYASA 360

Query: 457 GKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            +WD V+ +R+ MK   +T+  G S IE + ++H F+  D++H  + EIYA+L   + ++
Sbjct: 361 QRWDGVAKLRKLMKGGQITKAAGYSVIEGEGEIHKFIVEDKSHPRHYEIYALLNEISTKM 420

Query: 517 R 517
           +
Sbjct: 421 K 421



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 2/150 (1%)

Query: 53  SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLL-LNIRPSEFTF 111
           S S       ++F  +P  +VVS TT+I  +++   Y +A+ +F +M     +RP+E T 
Sbjct: 87  SRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTI 146

Query: 112 GSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF-EDTH 170
            SV  +   L  L +G+++ ++A   GL  N++V + +L++Y +   I+ A  VF E   
Sbjct: 147 ASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGK 206

Query: 171 NPNVVSYTTMICGLLKRERFEDALKLFQEM 200
             N+ S+ +M+ GL    R  +AL+L+ +M
Sbjct: 207 RRNLCSWNSMMMGLAVHGRSNEALQLYDQM 236


>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 607

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/458 (34%), Positives = 248/458 (54%), Gaps = 33/458 (7%)

Query: 54  ESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS 113
           + ++   VH +FD++P  + VS   ++  F +  + E     F +M    + P+++T  +
Sbjct: 52  QHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTIST 111

Query: 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS-------------------------- 147
           ++ +  + E   L +Q+HA A  +G   NVFVGS                          
Sbjct: 112 LLRAVISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKD 171

Query: 148 -----AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH 202
                A++  Y++L    +A   F+     N++S+TT++ G +K ++   A  +F +M  
Sbjct: 172 VTSWNALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSE 231

Query: 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSF 262
           RNVVSW AMI GY Q  R  +A+ LF+ M +    PNH T    + A A  ++L MG   
Sbjct: 232 RNVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQL 291

Query: 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG 322
           H C +K     DV    SL+  YAKCG M+ +  VF+ + ++N+V+WNA+I GYA +G  
Sbjct: 292 HPCIIKSGIANDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLA 351

Query: 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC 382
             A+E F+RM++ G  P+ VT + +L AC H GLVE+G  +F+    +     + EHY+C
Sbjct: 352 TRALEEFDRMKVVGT-PDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSC 410

Query: 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED 442
           MVDL  R+GRF EA+  + ++PF+P +  W ALL  C +HSN+ELGE+AA RI  L+   
Sbjct: 411 MVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSH 470

Query: 443 VSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR-VPG 479
             SY +LS      G W +V+ +R  MKE+G+ +  PG
Sbjct: 471 PVSYSVLSKIQGEKGVWSSVNELRDTMKERGIKKQTPG 508


>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
 gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
          Length = 530

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 149/417 (35%), Positives = 240/417 (57%), Gaps = 3/417 (0%)

Query: 95  LFSRMLLLN-IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLY 153
           LF RML      P++F +  V+ +++ +  + + K +H+ A K G   +  + +++LD Y
Sbjct: 106 LFLRMLRHGRPAPNQFVYPLVLRAASGV-GVGIVKSIHSHACKSGFCGHDIIRTSVLDGY 164

Query: 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIG 213
            +   + +A ++F+     NVVS+T ++ G  +  +  DA+ LF+ MP R+V +WNA+I 
Sbjct: 165 SRHGMMADARKLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIA 224

Query: 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273
           G SQ G   EAV +F  M+  G  PN +T+ C + A  ++  L +GK  H  A +     
Sbjct: 225 GCSQNGLFVEAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGF 284

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
              V N LI  Y KCG++E +  +FD++++R++ TWN++I   A +G  + AI  F  MR
Sbjct: 285 GSSVLNGLIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNEMR 344

Query: 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393
             G+ P+ VT +GLL AC H G V++G  YF   + E     + EHY C++DLL R+GRF
Sbjct: 345 GEGVEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLGRAGRF 404

Query: 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453
           ++A   + D+  +     W +LL  C++H  VE  E A R++L LDP + +  VML+N  
Sbjct: 405 QDALNVISDMRIEADEVMWGSLLNACRVHRQVEFAELAIRKLLELDPNNANYVVMLANVY 464

Query: 454 SVAGKWDNVSNIRREMKEKGM-TRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509
           S  G W+ V  +R+ +KE+ +  ++PGCSWIE+  K H F +GD  H  ++ IY  L
Sbjct: 465 SEGGLWEEVRKVRKFVKEENIGKKLPGCSWIEVDRKTHRFYSGDDAHPESENIYDTL 521



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 9/209 (4%)

Query: 46  TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIR 105
           T  VS  + + K      +F+ +P+ +V +   II   ++   + EA+ +F RM+    R
Sbjct: 189 TALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIFGRMVGAGFR 248

Query: 106 PSEFTFGSVIPSSTALEDLNLGKQLH--AWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163
           P+  T   V+ +   L  L +GK +H  AW T VG  S+V  G  ++D+Y K  ++E A 
Sbjct: 249 PNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNG--LIDMYGKCGNLEGAR 306

Query: 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTG 219
            +F++  + ++ ++ ++I  L      + A+ +F EM       +VV++  ++   +  G
Sbjct: 307 WIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVVTFVGLLNACTHGG 366

Query: 220 RNEEAVNLFIEMLRE-GLVPNHSTLPCAI 247
             +E +  F  M  E G+ P      C I
Sbjct: 367 FVDEGIRYFELMQHEHGIEPEIEHYGCII 395


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 253/460 (55%), Gaps = 19/460 (4%)

Query: 44  IRTDSVSCGSESDKFSS---------------VHQVFDEVPDLNVVSATTIIGRFAKQHH 88
           +R  S+  G ES  F S                 +VFD + + +VVS  +II  + + + 
Sbjct: 135 VRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNR 194

Query: 89  YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148
           +++ + LF  M  +N+R    T    I ++  L +  +G  L  +  + G+  ++++G+ 
Sbjct: 195 FKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNT 254

Query: 149 ILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208
           ++D+Y +   I+ A RVF      N+VS+  MI G  K      A KLF EMP R+V+SW
Sbjct: 255 LIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISW 314

Query: 209 NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268
            +MI GYS   ++ EAV LF EM+   + P+  T+  A+ A A++ +L  G++ H    K
Sbjct: 315 TSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK 374

Query: 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF 328
              K DVFVGNSLI  Y KCG +E +L VF+ +  R+ V+W ++I G A NG  E A+  
Sbjct: 375 HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNV 434

Query: 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDL 386
           F++M   GI P   T +G+L AC H GLV+KG  +F    +E+   L PE  HY C+VDL
Sbjct: 435 FDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKS--MENTYRLAPEMKHYGCVVDL 492

Query: 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446
           L RSG    A  F+  +P  P +  W+ LL  C++H N+ L E  ++++L LDP +  +Y
Sbjct: 493 LCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNY 552

Query: 447 VMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIK 486
           V+ S+  + + +WD+V  IR+ M+   + +    S IE++
Sbjct: 553 VLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 592



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 100/454 (22%), Positives = 203/454 (44%), Gaps = 84/454 (18%)

Query: 10  SSLSLNKLSKLHSLAPNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVP 69
           +S SLN + +LH+      +    +S+ ++    I+  ++S  S        H VF+++ 
Sbjct: 23  NSTSLNSIKELHAQLVRAQMHIDPSSISEV----IKHYALSPQS----LPKAHFVFNQIQ 74

Query: 70  DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129
              ++    +I   +K     +AI+ ++ M    I+ S  TF  +  S   + D+  G+ 
Sbjct: 75  RPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQM 134

Query: 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRER 189
           +   + K+G +S +FV +A++ +Y+    +  A +VF+     +VVS+ ++ICG  +  R
Sbjct: 135 VRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNR 194

Query: 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249
           F+  L LF+EM   NV +                               +  T+  AI A
Sbjct: 195 FKKVLDLFREMQAINVRA-------------------------------DSVTMMKAISA 223

Query: 250 AANIAALGMGKSFHACAVKFLGK----LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
              ++   MG       VK++ +    +D+++GN+LI  Y + G ++ +  VF ++ E+N
Sbjct: 224 TCFLSEWEMGDYL----VKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKN 279

Query: 306 IVTWNAVICGYAQNG-------------------------------RGEEAIEFFERMRI 334
           IV+WNA+I GYA+ G                               +  EA++ F+ M +
Sbjct: 280 IVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMV 339

Query: 335 NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA--CMVDLLSRSGR 392
           + ++P+ +T+   L AC H G ++ G +     +  D   +K + +    ++D+  + G 
Sbjct: 340 SMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHD---IKSDVFVGNSLIDMYCKCGV 396

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE 426
            ++A +   D+     +  W +++ G  ++   E
Sbjct: 397 VEKALQVFNDMKTRDSVS-WTSIISGLAVNGFAE 429



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 133/276 (48%), Gaps = 9/276 (3%)

Query: 196 LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255
           +F ++    ++ WN MI G S++ R  +A++ +  M  +G+  +H T      + A ++ 
Sbjct: 69  VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSD 128

Query: 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICG 315
           +  G+     ++K   +  +FV N+LI  Y   G +  +  VFD + ER++V+WN++ICG
Sbjct: 129 VRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICG 188

Query: 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML 375
           Y Q  R ++ ++ F  M+   +R + VT++  + A       E G  Y  +  +++ G++
Sbjct: 189 YYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMG-DYLVKY-IDEHGVV 246

Query: 376 KPEHYA-CMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR 434
              +    ++D+  R G    A    Y +  +  I  W A++ G     N+     AA++
Sbjct: 247 VDLYLGNTLIDMYGRRGMIDFAGRVFYQMK-EKNIVSWNAMIMGYAKVGNL----VAAKK 301

Query: 435 ILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREM 469
           +    P  DV S+  +    S+A +      + +EM
Sbjct: 302 LFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEM 337



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 1/121 (0%)

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA-KCGSMEDSLLVFD 299
           ST   +  A +N  +L   K  HA  V+    +D    + +I  YA    S+  +  VF+
Sbjct: 12  STFSKSQRAISNSTSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFN 71

Query: 300 KLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359
           ++    ++ WN +I G +++ R  +AI F+  M   GI+ + +T + L  +C     V +
Sbjct: 72  QIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQ 131

Query: 360 G 360
           G
Sbjct: 132 G 132


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/456 (33%), Positives = 251/456 (55%), Gaps = 36/456 (7%)

Query: 64  VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED 123
           +F ++P+ +V+S +T+I  +A      EA+ LF  M+     P+  T  S + +     +
Sbjct: 263 LFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRN 322

Query: 124 LNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG 183
           L  GK++H  A   G + +  V +A++D+Y+K S  +EA                     
Sbjct: 323 LEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEA--------------------- 361

Query: 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243
                     + LFQ +P ++VVSW A++ GY+Q G   +++ +F  ML +G+ P+   +
Sbjct: 362 ----------VDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAV 411

Query: 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303
              + A++ +         H   V+     +VFVG SLI  Y+KCGS+ D++ +F  +  
Sbjct: 412 VKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIV 471

Query: 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKGYS 362
           R++V W+++I  Y  +GRG EA+E F++M  N  +RPN VT L +L AC+H GLVE+G  
Sbjct: 472 RDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLK 531

Query: 363 YFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
            F   ++     L+P  EH+  MVDLL R G+  +A + +  +P   G   W ALLG C+
Sbjct: 532 IFD--RMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACR 589

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
           IH N+E+GE AA+ +  LDP     Y++LSN  +V GKWDNV+ +R  +KE+G+ ++ G 
Sbjct: 590 IHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQ 649

Query: 481 SWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
           S +E++  VH F+  DR H  + +IY +LR    Q+
Sbjct: 650 SMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQM 685



 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 142/464 (30%), Positives = 247/464 (53%), Gaps = 31/464 (6%)

Query: 56   DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115
            ++  +   VF+++P+        +I  FA    +  ++ L+S+M+   ++P +F F   +
Sbjct: 766  NRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFAL 825

Query: 116  PSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
             S   L DL  GK +H      G  +++FV +A++D+Y K   IE A  VF+        
Sbjct: 826  KSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFD-------- 877

Query: 176  SYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235
                                   +M  R++VSW +MI GY+  G N E +  F  M   G
Sbjct: 878  -----------------------KMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914

Query: 236  LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295
            ++PN  ++   ++A  N+ AL  G+ FH+  ++   + D+ V  +++  Y+KCGS++ + 
Sbjct: 915  VIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLAR 974

Query: 296  LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355
             +FD+   +++V W+A+I  Y  +G G +AI+ F++M   G+RP+ VT   +L AC+H+G
Sbjct: 975  CLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSG 1034

Query: 356  LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415
            L+E+G  YF     E     K  +YACMVDLL R+G+  EA + + ++P +P    W +L
Sbjct: 1035 LLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSL 1094

Query: 416  LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475
            LG C+IH+N++L E  A  +  LDP     +V+LSN  +   +W+ V  +R+ M  +G  
Sbjct: 1095 LGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGAN 1154

Query: 476  RVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519
            ++ G S +E  ++VH F  GDR+H   +++YA L      ++  
Sbjct: 1155 KIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHL 1198



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 193/441 (43%), Gaps = 81/441 (18%)

Query: 58  FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIP 116
             +  +VFDE P  NV    + +  + ++  +EE + LF  M+      P  FT    + 
Sbjct: 52  LQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALK 111

Query: 117 SSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175
           +   L  L LGK +H +A K   + S++FVGSA+++LY K   + EA +VFE+   P+ V
Sbjct: 112 ACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTV 171

Query: 176 SYTTMICGLLKRERFEDALKLFQEMPHRNVVSW--------------------------- 208
            +T+M+ G  +    E+AL LF +M   + V                             
Sbjct: 172 LWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGL 231

Query: 209 -------------NAMIGGYSQTGRNEEAVNLFI-------------------------- 229
                        N+++  Y++TG  + A NLF                           
Sbjct: 232 VIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEA 291

Query: 230 -----EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284
                EM+ +   PN  T+  A+ A A    L  GK  H  AV    +LD  V  +LI  
Sbjct: 292 LNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDM 351

Query: 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344
           Y KC   ++++ +F +L ++++V+W A++ GYAQNG   +++  F  M  +GI+P+ V +
Sbjct: 352 YMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAV 411

Query: 345 LGLLWACNHTGLVEKG---YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401
           + +L A +  G+ ++    + Y  ++       +     A +++L S+ G   +A + L+
Sbjct: 412 VKILAASSELGIFQQALCLHGYVVRSGFNSNVFVG----ASLIELYSKCGSLGDAVK-LF 466

Query: 402 DLPFDPGIGFWKALLGGCQIH 422
                  +  W +++    IH
Sbjct: 467 KGMIVRDVVIWSSMIAAYGIH 487



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 36/236 (15%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           QLH+   K G+  + F  + +  LY K +S++ A +VF++T                   
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDET------------------- 62

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCAI 247
                       PH NV  WN+ +  Y +  + EE + LF  M+   G  P++ T+P A+
Sbjct: 63  ------------PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIAL 110

Query: 248 IAAANIAALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305
            A A +  L +GK  H  A K   +G  D+FVG++L+  Y+KCG M ++L VF++    +
Sbjct: 111 KACAGLRMLELGKVIHGFAKKNDEIGS-DMFVGSALVELYSKCGQMGEALKVFEEFQRPD 169

Query: 306 IVTWNAVICGYAQNGRGEEAIEFFERM-RINGIRPNGVTLLGLLWACNHTGLVEKG 360
            V W +++ GY QN   EEA+  F +M  ++ +  + VTL+ ++ AC     V+ G
Sbjct: 170 TVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAG 225



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 7/180 (3%)

Query: 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMR 333
           D F    L S YAKC S++ +  VFD+    N+  WN+ +  Y +  + EE +  F  M 
Sbjct: 35  DTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMI 94

Query: 334 IN-GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392
              G  P+  T+   L AC    ++E G      AK  D         + +V+L S+ G+
Sbjct: 95  CTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQ 154

Query: 393 FKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE-----LGEFAARRILALDPEDVSSYV 447
             EA +   +    P    W +++ G Q +++ E       +      + LDP  + S V
Sbjct: 155 MGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVV 213


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 256/459 (55%), Gaps = 3/459 (0%)

Query: 63  QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-IRPSEFTFGSVIPSSTAL 121
           Q+FDE+P+ + VS  +I+    K       + + + M   + ++P  F F  ++ + ++L
Sbjct: 59  QLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSL 118

Query: 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI 181
             L LGKQ+HA         +  V S+++D+Y K    +EA  VF+     N VS+T+MI
Sbjct: 119 GYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMI 178

Query: 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNH 240
            G  +  R  +A+ LF + P RN+ SW A+I G  Q+G    + +LF EM REG+ + + 
Sbjct: 179 SGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDP 238

Query: 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300
             L   +   AN+A L +GK  H   +    +  +F+ N+L+  YAKC  +  +  +F +
Sbjct: 239 LVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYR 298

Query: 301 LTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360
           +  +++++W ++I G AQ+G+ EEA+  ++ M ++ I+PN VT +GLL+AC+H GLV +G
Sbjct: 299 MPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRG 358

Query: 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQ 420
              F     +       +HY C++DLLSRSG   EA+  L  +PF P    W +LL  C 
Sbjct: 359 RELFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACM 418

Query: 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGC 480
            H+N+E+G   A R+L L PED S+Y++LSN  + A  W +VS +R+ M    + + PG 
Sbjct: 419 RHNNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGY 478

Query: 481 SWIEIKSKVHVFVTGDR-NHHMNDEIYAVLRSCTEQIRE 518
           S I+      VF  G+  +H M +EI  +L+    ++R+
Sbjct: 479 SSIDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRK 517



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 85/372 (22%)

Query: 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188
           +LH+   K G   +  + + +LD+Y K   I +A ++F+                     
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFD--------------------- 62

Query: 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML-REGLVPNHSTLPCAI 247
                     EMP+R+ VSW +++  +++       +++   M   +GL P+H    C +
Sbjct: 63  ----------EMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIV 112

Query: 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV 307
            A +++  L +GK  HA  +      D  V +SLI  Y KCG  +++  VFD +  +N V
Sbjct: 113 RACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSV 172

Query: 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG-----YS 362
           +W ++I GYA++GR  EA++ F +  +  +           W    +GL++ G     +S
Sbjct: 173 SWTSMISGYARSGRKCEAMDLFLQAPVRNL---------FSWTALISGLIQSGHGIYSFS 223

Query: 363 YFSQAKLE-----DPGMLKPEHYAC------------------------------MVDLL 387
            F++ + E     DP +L      C                              +VD+ 
Sbjct: 224 LFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMY 283

Query: 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVE--LGEFAARRILALDPEDVSS 445
           ++      AK+  Y +P    I  W +++ G   H   E  L  +    +  + P +V +
Sbjct: 284 AKCSDILAAKDIFYRMPRKDVIS-WTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEV-T 341

Query: 446 YVMLSNALSVAG 457
           +V L  A S AG
Sbjct: 342 FVGLLYACSHAG 353


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,911,618,061
Number of Sequences: 23463169
Number of extensions: 326617152
Number of successful extensions: 880740
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7891
Number of HSP's successfully gapped in prelim test: 3571
Number of HSP's that attempted gapping in prelim test: 711683
Number of HSP's gapped (non-prelim): 58871
length of query: 521
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 374
effective length of database: 8,910,109,524
effective search space: 3332380961976
effective search space used: 3332380961976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)