BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009967
         (521 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
          Length = 874

 Score = 28.9 bits (63), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV-AGKWDN 461
           LP  PG    K      +  +  E GE      L   PED+         L+V  G   +
Sbjct: 396 LPASPGAAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSH 455

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            + + R M   G   V GC  I+I  +   F  G   H   +  Y  L   T +I
Sbjct: 456 AAVVARGM---GTCCVSGCGEIKINEEAKTFELG--GHTFAEGDYISLDGSTGKI 505


>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
 pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
           Mg-Phosphonopyruvate
          Length = 873

 Score = 28.9 bits (63), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV-AGKWDN 461
           LP  PG    K      +  +  E GE      L   PED+         L+V  G   +
Sbjct: 395 LPASPGAAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSH 454

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            + + R M   G   V GC  I+I  +   F  G   H   +  Y  L   T +I
Sbjct: 455 AAVVARGM---GTCCVSGCGEIKINEEAKTFELG--GHTFAEGDYISLDGSTGKI 504


>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
           R219eE271RS262D Adapts A Second Conformational State
          Length = 874

 Score = 28.9 bits (63), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV-AGKWDN 461
           LP  PG    K      +  +  E GE      L   PED+         L+V  G   +
Sbjct: 396 LPASPGAAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSH 455

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            + + R M   G   V GC  I+I  +   F  G   H   +  Y  L   T +I
Sbjct: 456 AAVVARGM---GTCCVSGCGEIKINEEAKTFELG--GHTFAEGDYISLDGSTGKI 505


>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
          Length = 873

 Score = 28.9 bits (63), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 6/115 (5%)

Query: 403 LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV-AGKWDN 461
           LP  PG    K      +  +  E GE      L   PED+         L+V  G   +
Sbjct: 395 LPASPGAAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSH 454

Query: 462 VSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516
            + + R M   G   V GC  I+I  +   F  G   H   +  Y  L   T +I
Sbjct: 455 AAVVARGM---GTCCVSGCGEIKINEEAKTFELG--GHTFAEGDYISLDGSTGKI 504


>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
           Cgd3_920
 pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
           Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
           Kinase Inhibitor Rm-1-95
 pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
           Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
           Kinase Inhibitor Nm-Pp1
          Length = 486

 Score = 28.5 bits (62), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 26/174 (14%)

Query: 42  PAIRTDSVSCGSES--DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA--IYLFS 97
           P++R  +  C       K+SS      ++P L   SA T I +F  +    +A  +Y+ S
Sbjct: 265 PSLRITATQCLEHPWIQKYSSETPTISDLPSLE--SAMTNIRQFQAEKKLAQAALLYMAS 322

Query: 98  RMLLLNIRPSEFT--FGSVIPSSTALEDLN-LGKQLHAWATKVGLQSNVFV---GSAILD 151
           ++  L+    + T  F  +  ++  + D + L +  H +    G+ SN  +   GS I D
Sbjct: 323 KLTTLD-ETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIED 381

Query: 152 LYIKLSSIEEATRVFEDTHNPNVVSYTTMICG------LLKRERFEDALKLFQE 199
               L  +        D      + Y+  I        LL RER E A K+F +
Sbjct: 382 QIDSLMPLL-------DMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDK 428


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,722,611
Number of Sequences: 62578
Number of extensions: 598326
Number of successful extensions: 1404
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1404
Number of HSP's gapped (non-prelim): 5
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)