Query 009967
Match_columns 521
No_of_seqs 556 out of 3348
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 19:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.7E-71 3.7E-76 587.0 58.7 491 26-519 201-767 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.2E-70 4.9E-75 565.2 53.2 490 26-519 101-604 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.4E-61 1.2E-65 507.2 49.4 449 25-479 99-626 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-59 2.7E-64 487.8 50.3 453 24-479 382-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1E-57 2.2E-62 473.6 47.7 427 48-479 376-848 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.6E-55 5.6E-60 453.3 39.7 447 24-479 135-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.8E-29 1.7E-33 267.8 47.2 418 48-474 437-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-28 3E-33 265.9 48.4 440 24-472 375-832 (899)
9 PRK11447 cellulose synthase su 99.9 1.1E-20 2.4E-25 205.5 51.2 414 48-472 68-666 (1157)
10 PRK11447 cellulose synthase su 99.9 4.8E-21 1E-25 208.3 47.7 415 49-475 276-744 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2.2E-22 4.7E-27 186.8 27.9 377 75-462 118-509 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 8.1E-22 1.7E-26 183.1 29.7 418 48-475 54-488 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.9E-20 6.2E-25 190.1 44.2 390 76-472 130-571 (615)
14 PRK11788 tetratricopeptide rep 99.9 1.6E-20 3.4E-25 182.5 29.8 273 207-483 71-358 (389)
15 PRK15174 Vi polysaccharide exp 99.9 5.3E-19 1.1E-23 180.2 39.7 373 52-473 15-404 (656)
16 PRK10049 pgaA outer membrane p 99.9 3.1E-18 6.7E-23 178.3 42.5 393 48-471 21-455 (765)
17 PRK11788 tetratricopeptide rep 99.9 1E-19 2.2E-24 176.8 29.5 283 82-368 44-345 (389)
18 PRK15174 Vi polysaccharide exp 99.9 2.2E-18 4.8E-23 175.7 40.0 314 48-368 48-379 (656)
19 TIGR00990 3a0801s09 mitochondr 99.9 4E-18 8.8E-23 174.3 41.3 391 48-444 133-577 (615)
20 PRK09782 bacteriophage N4 rece 99.9 3.6E-17 7.7E-22 170.7 47.9 212 254-472 490-706 (987)
21 PRK14574 hmsH outer membrane p 99.8 3.2E-16 6.9E-21 160.3 45.8 433 26-472 29-513 (822)
22 PRK09782 bacteriophage N4 rece 99.8 1.2E-15 2.6E-20 159.4 42.7 407 48-474 319-742 (987)
23 PRK14574 hmsH outer membrane p 99.8 2.3E-15 4.9E-20 154.1 41.9 426 16-446 38-521 (822)
24 PRK10049 pgaA outer membrane p 99.8 6.5E-16 1.4E-20 161.0 38.3 360 78-473 20-423 (765)
25 KOG2002 TPR-containing nuclear 99.8 4.6E-16 1E-20 152.6 33.3 464 4-473 190-746 (1018)
26 KOG2002 TPR-containing nuclear 99.8 6.4E-16 1.4E-20 151.6 30.9 399 48-455 313-762 (1018)
27 KOG2003 TPR repeat-containing 99.8 1.9E-15 4.2E-20 136.1 28.1 203 252-458 502-709 (840)
28 KOG2003 TPR repeat-containing 99.7 1.9E-14 4.2E-19 129.8 29.5 390 80-472 208-689 (840)
29 KOG0495 HAT repeat protein [RN 99.7 1E-12 2.2E-17 124.0 40.8 455 24-487 388-893 (913)
30 PF13429 TPR_15: Tetratricopep 99.7 8.4E-17 1.8E-21 148.1 11.9 258 210-471 13-276 (280)
31 KOG0495 HAT repeat protein [RN 99.7 2.6E-12 5.7E-17 121.3 40.4 424 48-482 382-856 (913)
32 KOG1915 Cell cycle control pro 99.7 1.8E-12 3.9E-17 117.9 35.3 419 54-481 85-545 (677)
33 KOG0547 Translocase of outer m 99.7 7.8E-13 1.7E-17 120.7 32.1 385 76-470 118-564 (606)
34 KOG4422 Uncharacterized conser 99.7 2.2E-12 4.7E-17 115.9 33.0 313 73-403 116-459 (625)
35 KOG2076 RNA polymerase III tra 99.7 5.2E-13 1.1E-17 130.7 31.3 311 157-470 153-510 (895)
36 KOG4422 Uncharacterized conser 99.6 4E-12 8.6E-17 114.3 34.1 349 71-440 205-592 (625)
37 KOG1915 Cell cycle control pro 99.6 6.1E-12 1.3E-16 114.5 35.6 432 72-514 72-538 (677)
38 KOG1126 DNA-binding cell divis 99.6 3.1E-14 6.8E-19 134.9 21.4 270 158-471 334-619 (638)
39 PRK10747 putative protoheme IX 99.6 1.6E-12 3.4E-17 125.3 30.8 248 214-471 127-389 (398)
40 KOG1126 DNA-binding cell divis 99.6 2.2E-13 4.7E-18 129.3 23.4 245 220-472 334-586 (638)
41 PRK10747 putative protoheme IX 99.6 4.1E-12 8.9E-17 122.4 32.1 276 156-438 97-390 (398)
42 KOG2076 RNA polymerase III tra 99.6 1.1E-11 2.4E-16 121.6 34.2 315 86-404 152-510 (895)
43 KOG1155 Anaphase-promoting com 99.6 3.4E-11 7.3E-16 109.6 34.6 329 139-471 160-494 (559)
44 TIGR00540 hemY_coli hemY prote 99.6 1.1E-11 2.3E-16 120.2 32.3 222 212-436 160-397 (409)
45 PF13429 TPR_15: Tetratricopep 99.6 2.8E-14 6E-19 131.4 13.0 160 205-366 110-273 (280)
46 TIGR00540 hemY_coli hemY prote 99.6 1E-11 2.2E-16 120.4 31.2 283 185-471 95-398 (409)
47 COG2956 Predicted N-acetylgluc 99.6 5.6E-12 1.2E-16 109.4 25.7 300 156-495 48-370 (389)
48 KOG1155 Anaphase-promoting com 99.5 2.7E-11 5.9E-16 110.2 29.6 282 151-440 235-538 (559)
49 KOG1173 Anaphase-promoting com 99.5 6.8E-11 1.5E-15 110.3 32.5 262 203-470 242-516 (611)
50 KOG0547 Translocase of outer m 99.5 7.3E-11 1.6E-15 108.1 32.0 383 50-440 123-568 (606)
51 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.6E-15 104.5 29.6 282 121-437 97-389 (400)
52 COG2956 Predicted N-acetylgluc 99.5 8.4E-11 1.8E-15 102.3 26.6 282 121-437 48-346 (389)
53 COG3071 HemY Uncharacterized e 99.5 1.6E-10 3.5E-15 103.6 26.8 271 55-331 97-386 (400)
54 TIGR02521 type_IV_pilW type IV 99.4 4.3E-11 9.3E-16 107.3 23.5 198 274-472 30-232 (234)
55 KOG1174 Anaphase-promoting com 99.4 1.4E-09 3E-14 97.8 31.2 387 48-446 103-508 (564)
56 KOG3785 Uncharacterized conser 99.4 4.4E-09 9.5E-14 92.8 32.0 410 49-473 29-491 (557)
57 KOG4318 Bicoid mRNA stability 99.4 2.3E-10 5.1E-15 112.0 24.4 246 94-355 11-285 (1088)
58 KOG4318 Bicoid mRNA stability 99.3 1.8E-09 3.9E-14 106.0 28.4 262 203-476 202-598 (1088)
59 KOG1173 Anaphase-promoting com 99.3 1.6E-09 3.4E-14 101.5 26.7 238 213-454 286-534 (611)
60 KOG1129 TPR repeat-containing 99.3 1.2E-10 2.5E-15 101.4 17.5 230 239-473 222-459 (478)
61 KOG2047 mRNA splicing factor [ 99.3 4.2E-08 9.1E-13 93.4 34.7 112 355-468 564-683 (835)
62 PRK12370 invasion protein regu 99.3 1.3E-09 2.8E-14 110.0 26.3 262 204-474 255-537 (553)
63 KOG2376 Signal recognition par 99.3 7.4E-08 1.6E-12 90.9 35.4 174 289-468 321-516 (652)
64 KOG1174 Anaphase-promoting com 99.3 1.5E-07 3.2E-12 85.1 35.4 279 186-471 208-499 (564)
65 KOG4162 Predicted calmodulin-b 99.3 2.2E-08 4.9E-13 97.3 32.5 367 102-473 317-784 (799)
66 KOG1840 Kinesin light chain [C 99.3 8.6E-10 1.9E-14 106.1 23.0 228 243-470 202-477 (508)
67 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4.1E-14 96.5 23.5 196 205-438 31-232 (234)
68 PF13041 PPR_2: PPR repeat fam 99.3 1E-11 2.2E-16 80.3 6.1 50 71-120 1-50 (50)
69 PRK12370 invasion protein regu 99.3 1.4E-09 2.9E-14 109.8 24.2 227 239-472 255-502 (553)
70 KOG2047 mRNA splicing factor [ 99.3 2.7E-07 5.8E-12 88.1 36.8 175 74-254 103-295 (835)
71 PF13041 PPR_2: PPR repeat fam 99.3 2.2E-11 4.9E-16 78.7 6.7 50 304-353 1-50 (50)
72 KOG1129 TPR repeat-containing 99.2 9.6E-10 2.1E-14 95.8 17.7 229 208-441 226-461 (478)
73 PF12569 NARP1: NMDA receptor- 99.2 1.2E-07 2.6E-12 92.7 34.3 408 49-468 11-516 (517)
74 COG3063 PilF Tfp pilus assembl 99.2 1.7E-09 3.7E-14 90.0 17.5 188 281-469 41-233 (250)
75 PRK11189 lipoprotein NlpI; Pro 99.2 3.3E-09 7.3E-14 97.9 21.5 115 219-334 40-160 (296)
76 KOG1840 Kinesin light chain [C 99.2 4.8E-09 1E-13 101.1 23.0 232 206-437 200-478 (508)
77 KOG1156 N-terminal acetyltrans 99.2 1.5E-07 3.2E-12 89.9 31.9 382 54-474 53-470 (700)
78 KOG0548 Molecular co-chaperone 99.2 1.5E-07 3.2E-12 88.2 30.8 387 51-455 11-472 (539)
79 KOG0624 dsRNA-activated protei 99.2 6.7E-08 1.4E-12 85.2 26.0 300 142-446 37-378 (504)
80 PRK11189 lipoprotein NlpI; Pro 99.1 3.8E-08 8.2E-13 90.9 24.7 90 277-368 66-159 (296)
81 KOG4340 Uncharacterized conser 99.1 3.5E-07 7.5E-12 79.2 28.3 404 48-474 16-445 (459)
82 COG3063 PilF Tfp pilus assembl 99.1 4.2E-08 9.2E-13 81.9 21.5 200 207-442 37-240 (250)
83 PF12569 NARP1: NMDA receptor- 99.1 1.8E-07 3.8E-12 91.5 29.1 282 183-470 13-332 (517)
84 KOG0548 Molecular co-chaperone 99.1 9.5E-07 2.1E-11 82.9 30.3 352 48-413 42-463 (539)
85 PF04733 Coatomer_E: Coatomer 99.1 1.6E-08 3.5E-13 91.9 18.7 158 281-445 108-272 (290)
86 KOG3617 WD40 and TPR repeat-co 99.1 6.3E-07 1.4E-11 87.8 29.3 226 49-301 735-993 (1416)
87 KOG1125 TPR repeat-containing 99.0 1E-08 2.2E-13 96.5 16.3 218 251-471 296-526 (579)
88 KOG1156 N-terminal acetyltrans 99.0 1.5E-06 3.3E-11 83.3 30.6 388 76-473 11-435 (700)
89 PF04733 Coatomer_E: Coatomer 99.0 7.1E-09 1.5E-13 94.3 13.9 191 272-472 63-265 (290)
90 KOG3785 Uncharacterized conser 99.0 8.1E-07 1.8E-11 78.8 25.4 381 80-469 29-454 (557)
91 cd05804 StaR_like StaR_like; a 99.0 1.6E-06 3.6E-11 83.1 30.0 197 277-473 116-337 (355)
92 KOG3616 Selective LIM binding 99.0 3E-06 6.4E-11 82.3 29.4 376 48-473 621-1025(1636)
93 KOG2376 Signal recognition par 99.0 1.9E-05 4.2E-10 75.1 34.1 408 49-472 19-487 (652)
94 cd05804 StaR_like StaR_like; a 98.9 1.7E-06 3.8E-11 82.9 28.3 189 249-438 123-336 (355)
95 KOG4162 Predicted calmodulin-b 98.9 4.5E-06 9.8E-11 81.7 30.2 134 308-444 652-789 (799)
96 KOG3616 Selective LIM binding 98.9 3.7E-06 8E-11 81.7 29.1 171 246-435 738-908 (1636)
97 PRK04841 transcriptional regul 98.9 4.4E-06 9.5E-11 90.8 33.4 323 151-473 382-761 (903)
98 KOG1070 rRNA processing protei 98.9 2.5E-07 5.3E-12 95.6 21.3 233 274-516 1457-1701(1710)
99 KOG4340 Uncharacterized conser 98.9 1.1E-06 2.4E-11 76.2 20.9 304 145-468 12-335 (459)
100 TIGR03302 OM_YfiO outer membra 98.9 3.9E-07 8.4E-12 81.7 19.1 180 274-472 32-232 (235)
101 KOG0985 Vesicle coat protein c 98.8 4.7E-05 1E-09 76.9 33.6 275 157-464 1089-1375(1666)
102 KOG3617 WD40 and TPR repeat-co 98.8 8.9E-05 1.9E-09 73.4 34.6 203 17-233 730-995 (1416)
103 PRK10370 formate-dependent nit 98.8 6E-07 1.3E-11 77.1 18.1 148 313-474 23-175 (198)
104 KOG0985 Vesicle coat protein c 98.8 3.4E-05 7.4E-10 77.8 31.8 238 188-456 1089-1326(1666)
105 KOG0624 dsRNA-activated protei 98.8 3.1E-05 6.8E-10 68.8 27.4 307 75-404 40-368 (504)
106 KOG1128 Uncharacterized conser 98.8 4.2E-07 9.1E-12 88.2 17.2 218 238-473 396-617 (777)
107 KOG1914 mRNA cleavage and poly 98.8 0.00021 4.5E-09 67.7 33.9 125 343-469 368-498 (656)
108 KOG1127 TPR repeat-containing 98.7 2.2E-05 4.9E-10 79.1 27.2 417 48-470 498-994 (1238)
109 PRK15359 type III secretion sy 98.7 6E-07 1.3E-11 72.9 13.4 108 345-454 28-137 (144)
110 PRK04841 transcriptional regul 98.7 0.00013 2.9E-09 79.3 35.5 323 150-472 348-720 (903)
111 PLN02789 farnesyltranstransfer 98.7 8.9E-06 1.9E-10 75.2 22.3 223 208-469 40-299 (320)
112 PRK15359 type III secretion sy 98.7 9.9E-07 2.2E-11 71.7 13.8 95 379-473 26-122 (144)
113 KOG1128 Uncharacterized conser 98.7 7.8E-06 1.7E-10 79.7 21.7 189 271-474 394-584 (777)
114 KOG1070 rRNA processing protei 98.6 6.7E-06 1.5E-10 85.5 22.3 218 140-358 1455-1688(1710)
115 KOG1125 TPR repeat-containing 98.6 3E-06 6.5E-11 80.3 17.7 246 216-465 296-564 (579)
116 KOG1127 TPR repeat-containing 98.6 1.7E-05 3.7E-10 79.9 23.6 378 74-468 493-909 (1238)
117 KOG3081 Vesicle coat complex C 98.6 4.3E-05 9.4E-10 65.6 22.0 159 278-443 111-276 (299)
118 PRK15179 Vi polysaccharide bio 98.6 7.3E-06 1.6E-10 83.5 20.6 175 304-488 84-261 (694)
119 PRK15363 pathogenicity island 98.6 1.8E-06 3.9E-11 68.9 12.7 117 379-518 37-155 (157)
120 PRK14720 transcript cleavage f 98.6 1.6E-05 3.4E-10 81.9 22.6 40 415-454 229-268 (906)
121 COG5010 TadD Flp pilus assembl 98.5 1.7E-05 3.7E-10 68.1 18.3 156 310-468 70-227 (257)
122 TIGR03302 OM_YfiO outer membra 98.5 1.4E-05 3E-10 71.6 18.5 182 238-440 31-234 (235)
123 PRK10370 formate-dependent nit 98.5 1.8E-05 4E-10 68.0 18.2 154 282-446 23-181 (198)
124 COG5010 TadD Flp pilus assembl 98.5 1.5E-05 3.2E-10 68.5 17.0 135 338-474 63-199 (257)
125 PF12854 PPR_1: PPR repeat 98.5 2.2E-07 4.7E-12 53.8 4.1 32 138-169 2-33 (34)
126 PRK15179 Vi polysaccharide bio 98.5 1.5E-05 3.3E-10 81.2 19.6 141 272-416 83-229 (694)
127 KOG3081 Vesicle coat complex C 98.5 7.7E-05 1.7E-09 64.2 20.5 150 245-403 113-268 (299)
128 PRK14720 transcript cleavage f 98.5 8.7E-05 1.9E-09 76.7 24.6 235 108-388 31-268 (906)
129 TIGR02552 LcrH_SycD type III s 98.4 3.7E-06 8E-11 67.9 11.9 95 378-472 18-114 (135)
130 PF12854 PPR_1: PPR repeat 98.4 5.4E-07 1.2E-11 52.1 4.4 32 270-301 2-33 (34)
131 KOG1914 mRNA cleavage and poly 98.4 0.0022 4.9E-08 60.9 32.6 387 48-440 26-503 (656)
132 KOG2053 Mitochondrial inherita 98.4 0.0043 9.2E-08 62.7 34.4 413 52-477 19-507 (932)
133 COG4783 Putative Zn-dependent 98.3 0.0001 2.2E-09 69.1 19.8 117 351-469 316-434 (484)
134 COG4783 Putative Zn-dependent 98.3 0.00044 9.5E-09 64.9 23.1 133 215-368 316-452 (484)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.8E-05 3.8E-10 74.7 14.3 122 344-470 172-295 (395)
136 PLN02789 farnesyltranstransfer 98.3 0.00014 3E-09 67.3 19.9 189 281-472 43-250 (320)
137 TIGR02552 LcrH_SycD type III s 98.3 3.5E-05 7.5E-10 62.2 13.9 114 328-445 5-121 (135)
138 KOG3060 Uncharacterized conser 98.3 0.00012 2.6E-09 62.5 17.0 185 287-475 24-223 (289)
139 KOG3060 Uncharacterized conser 98.3 0.00023 5E-09 60.9 18.6 199 253-454 25-236 (289)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.8E-05 1.7E-09 70.4 17.2 127 276-405 170-296 (395)
141 KOG2053 Mitochondrial inherita 98.2 0.0091 2E-07 60.5 36.0 188 48-240 47-259 (932)
142 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6.2E-11 49.9 4.5 35 74-108 1-35 (35)
143 PF09976 TPR_21: Tetratricopep 98.2 7E-05 1.5E-09 61.1 14.1 114 354-468 24-143 (145)
144 PF07079 DUF1347: Protein of u 98.2 0.0055 1.2E-07 57.2 32.9 407 52-469 16-521 (549)
145 PF13812 PPR_3: Pentatricopept 98.1 3.9E-06 8.5E-11 48.9 4.2 33 74-106 2-34 (34)
146 PF13414 TPR_11: TPR repeat; P 98.1 1.2E-05 2.5E-10 56.1 7.1 65 408-472 2-67 (69)
147 cd00189 TPR Tetratricopeptide 98.1 4.9E-05 1.1E-09 56.6 10.3 93 380-472 3-97 (100)
148 TIGR00756 PPR pentatricopeptid 98.1 7.8E-06 1.7E-10 48.0 4.5 34 307-340 1-34 (35)
149 PF13432 TPR_16: Tetratricopep 98.1 1.7E-05 3.6E-10 54.5 6.7 58 415-472 3-60 (65)
150 TIGR02795 tol_pal_ybgF tol-pal 98.1 7.5E-05 1.6E-09 58.6 11.3 93 380-472 5-105 (119)
151 PF09976 TPR_21: Tetratricopep 98.0 0.00024 5.1E-09 58.0 14.3 124 308-435 14-144 (145)
152 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 47.0 4.5 33 307-339 2-34 (34)
153 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00014 3E-09 57.1 12.4 105 343-447 4-114 (119)
154 PLN03088 SGT1, suppressor of 98.0 0.00015 3.2E-09 68.8 14.3 103 348-452 9-113 (356)
155 PF14559 TPR_19: Tetratricopep 98.0 2.2E-05 4.8E-10 54.5 6.5 53 420-472 2-54 (68)
156 KOG2041 WD40 repeat protein [G 98.0 0.011 2.3E-07 58.2 26.2 297 5-334 613-951 (1189)
157 COG4235 Cytochrome c biogenesi 98.0 0.0002 4.3E-09 63.4 13.7 105 375-479 154-263 (287)
158 PF12895 Apc3: Anaphase-promot 98.0 8.3E-06 1.8E-10 59.4 4.1 78 390-468 2-83 (84)
159 PF14938 SNAP: Soluble NSF att 98.0 0.0012 2.6E-08 60.7 18.7 136 280-416 119-275 (282)
160 PF07079 DUF1347: Protein of u 97.9 0.02 4.4E-07 53.6 28.0 107 48-155 52-179 (549)
161 KOG0553 TPR repeat-containing 97.9 0.00018 3.9E-09 63.3 11.3 106 351-458 91-198 (304)
162 PRK02603 photosystem I assembl 97.9 0.00024 5.1E-09 59.9 11.9 93 379-471 37-148 (172)
163 PLN03088 SGT1, suppressor of 97.9 0.00034 7.4E-09 66.4 13.8 102 312-416 8-110 (356)
164 PF05843 Suf: Suppressor of fo 97.9 0.0009 2E-08 61.2 16.0 135 307-444 2-142 (280)
165 COG4700 Uncharacterized protei 97.8 0.0046 9.9E-08 50.5 17.5 133 337-471 85-221 (251)
166 PF12895 Apc3: Anaphase-promot 97.8 4.9E-05 1.1E-09 55.3 5.7 80 319-401 2-82 (84)
167 PF13371 TPR_9: Tetratricopept 97.8 9.2E-05 2E-09 52.2 6.8 58 417-474 3-60 (73)
168 PRK02603 photosystem I assembl 97.8 0.00067 1.5E-08 57.2 13.1 129 306-457 35-165 (172)
169 PF01535 PPR: PPR repeat; Int 97.8 3.3E-05 7.2E-10 43.8 3.6 31 74-104 1-31 (31)
170 KOG0550 Molecular chaperone (D 97.8 0.0012 2.6E-08 60.6 14.9 85 388-472 260-350 (486)
171 PRK10153 DNA-binding transcrip 97.8 0.0016 3.4E-08 64.7 17.3 138 304-443 335-487 (517)
172 CHL00033 ycf3 photosystem I as 97.8 0.00039 8.5E-09 58.4 11.4 94 376-469 34-139 (168)
173 PRK10866 outer membrane biogen 97.8 0.005 1.1E-07 54.8 18.8 172 281-470 38-239 (243)
174 PF14938 SNAP: Soluble NSF att 97.8 0.00045 9.8E-09 63.4 12.5 186 281-468 41-262 (282)
175 PRK15331 chaperone protein Sic 97.8 0.00062 1.3E-08 54.9 11.5 88 384-471 44-133 (165)
176 PF08579 RPM2: Mitochondrial r 97.7 0.0003 6.5E-09 52.2 8.7 79 77-155 29-116 (120)
177 cd00189 TPR Tetratricopeptide 97.7 0.00042 9.1E-09 51.4 10.2 90 349-440 8-99 (100)
178 PF13432 TPR_16: Tetratricopep 97.7 0.00018 3.8E-09 49.3 7.0 61 383-443 3-65 (65)
179 KOG0550 Molecular chaperone (D 97.7 0.009 2E-07 55.1 18.6 80 118-198 59-141 (486)
180 KOG0553 TPR repeat-containing 97.7 0.00022 4.8E-09 62.7 8.1 86 385-470 89-176 (304)
181 PF01535 PPR: PPR repeat; Int 97.6 7.6E-05 1.7E-09 42.2 3.4 30 308-337 2-31 (31)
182 COG3898 Uncharacterized membra 97.6 0.057 1.2E-06 49.7 27.7 273 187-472 97-392 (531)
183 PF05843 Suf: Suppressor of fo 97.6 0.0015 3.2E-08 59.8 13.1 129 342-472 2-136 (280)
184 PRK10866 outer membrane biogen 97.6 0.02 4.4E-07 51.0 19.5 179 73-264 32-236 (243)
185 PF08579 RPM2: Mitochondrial r 97.6 0.0019 4.1E-08 48.1 10.5 81 207-287 27-116 (120)
186 PRK15363 pathogenicity island 97.5 0.0048 1E-07 49.6 13.5 90 310-402 39-128 (157)
187 PRK10153 DNA-binding transcrip 97.5 0.0072 1.6E-07 60.1 17.9 136 336-474 332-484 (517)
188 COG4700 Uncharacterized protei 97.5 0.02 4.4E-07 46.9 16.5 134 304-437 87-221 (251)
189 KOG1130 Predicted G-alpha GTPa 97.5 0.00046 9.9E-09 63.2 7.9 251 81-332 25-341 (639)
190 PF06239 ECSIT: Evolutionarily 97.4 0.0011 2.4E-08 55.8 9.1 98 61-158 33-153 (228)
191 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.11 2.3E-06 48.9 28.4 87 28-117 25-118 (660)
192 PRK10803 tol-pal system protei 97.4 0.0017 3.6E-08 58.3 10.6 93 380-472 146-246 (263)
193 PF13431 TPR_17: Tetratricopep 97.4 0.00015 3.3E-09 41.8 2.6 34 431-464 1-34 (34)
194 PF13414 TPR_11: TPR repeat; P 97.4 0.00052 1.1E-08 47.6 5.8 65 376-440 2-69 (69)
195 PF13525 YfiO: Outer membrane 97.4 0.01 2.2E-07 51.5 14.8 165 280-463 10-198 (203)
196 KOG1130 Predicted G-alpha GTPa 97.4 0.00067 1.5E-08 62.1 7.5 250 118-368 27-342 (639)
197 PF10037 MRP-S27: Mitochondria 97.3 0.003 6.5E-08 60.2 11.9 114 237-350 63-182 (429)
198 PF14559 TPR_19: Tetratricopep 97.3 0.00041 9E-09 48.0 4.8 49 353-403 3-51 (68)
199 PF10037 MRP-S27: Mitochondria 97.3 0.006 1.3E-07 58.2 13.7 117 203-319 64-186 (429)
200 KOG2280 Vacuolar assembly/sort 97.3 0.23 4.9E-06 49.9 28.2 353 82-467 398-794 (829)
201 PF13428 TPR_14: Tetratricopep 97.3 0.00055 1.2E-08 42.4 4.6 42 410-451 2-43 (44)
202 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0014 3.1E-08 61.8 9.2 65 408-472 74-141 (453)
203 PF12688 TPR_5: Tetratrico pep 97.3 0.0064 1.4E-07 47.1 11.4 58 411-468 40-100 (120)
204 KOG1538 Uncharacterized conser 97.3 0.15 3.3E-06 50.1 22.3 97 48-169 562-658 (1081)
205 PF12688 TPR_5: Tetratrico pep 97.2 0.015 3.2E-07 45.1 12.6 91 312-402 7-100 (120)
206 CHL00033 ycf3 photosystem I as 97.2 0.013 2.8E-07 49.2 13.3 63 206-268 36-100 (168)
207 PF04840 Vps16_C: Vps16, C-ter 97.1 0.23 4.9E-06 46.2 32.4 23 75-97 2-24 (319)
208 PF13281 DUF4071: Domain of un 97.1 0.088 1.9E-06 49.3 18.8 165 274-441 140-337 (374)
209 PF13525 YfiO: Outer membrane 97.1 0.13 2.8E-06 44.5 18.9 84 310-397 114-198 (203)
210 PRK10803 tol-pal system protei 97.1 0.012 2.7E-07 52.8 12.7 102 343-444 145-252 (263)
211 KOG0543 FKBP-type peptidyl-pro 97.1 0.0057 1.2E-07 56.5 10.4 59 412-470 260-318 (397)
212 KOG1258 mRNA processing protei 97.1 0.35 7.7E-06 47.4 29.5 180 274-458 296-490 (577)
213 KOG2796 Uncharacterized conser 97.1 0.033 7.2E-07 48.3 14.1 132 309-441 180-318 (366)
214 PF13371 TPR_9: Tetratricopept 97.0 0.0034 7.4E-08 44.0 6.9 65 384-448 2-68 (73)
215 PF03704 BTAD: Bacterial trans 97.0 0.0033 7.1E-08 51.4 7.7 68 411-478 64-136 (146)
216 COG3898 Uncharacterized membra 97.0 0.3 6.4E-06 45.2 26.9 299 88-402 68-388 (531)
217 PF13424 TPR_12: Tetratricopep 97.0 0.0019 4.2E-08 46.0 5.5 61 411-471 7-74 (78)
218 KOG2796 Uncharacterized conser 97.0 0.17 3.6E-06 44.2 17.6 123 279-403 181-312 (366)
219 KOG0543 FKBP-type peptidyl-pro 97.0 0.014 3.1E-07 54.0 11.8 95 378-472 258-355 (397)
220 PF04840 Vps16_C: Vps16, C-ter 96.9 0.36 7.8E-06 44.9 26.7 109 343-468 179-287 (319)
221 PF06239 ECSIT: Evolutionarily 96.8 0.014 3E-07 49.4 9.6 97 194-290 34-153 (228)
222 KOG1538 Uncharacterized conser 96.8 0.14 3.1E-06 50.3 17.5 175 208-404 601-800 (1081)
223 COG4235 Cytochrome c biogenesi 96.8 0.062 1.4E-06 48.0 14.0 104 338-443 153-261 (287)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.6 1.3E-05 44.1 29.5 402 63-470 30-529 (660)
225 KOG2041 WD40 repeat protein [G 96.6 0.89 1.9E-05 45.4 25.2 202 105-332 689-904 (1189)
226 PF13512 TPR_18: Tetratricopep 96.6 0.062 1.3E-06 42.6 11.4 89 384-472 17-128 (142)
227 PF13281 DUF4071: Domain of un 96.5 0.53 1.2E-05 44.3 18.8 163 309-472 144-334 (374)
228 COG3118 Thioredoxin domain-con 96.5 0.057 1.2E-06 48.0 11.6 119 351-472 144-265 (304)
229 COG1729 Uncharacterized protei 96.4 0.047 1E-06 48.1 10.5 93 379-472 144-244 (262)
230 PF12921 ATP13: Mitochondrial 96.4 0.062 1.3E-06 42.1 10.2 79 308-386 4-97 (126)
231 PRK11619 lytic murein transgly 96.3 1.6 3.6E-05 45.0 31.8 50 182-232 107-156 (644)
232 KOG2280 Vacuolar assembly/sort 96.3 1.5 3.2E-05 44.4 32.9 312 137-470 426-771 (829)
233 PF10300 DUF3808: Protein of u 96.3 0.4 8.7E-06 47.5 17.7 160 309-471 191-375 (468)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.044 9.6E-07 52.1 10.2 97 376-475 74-177 (453)
235 PRK11906 transcriptional regul 96.2 0.12 2.7E-06 49.2 13.1 82 358-441 321-404 (458)
236 PF13512 TPR_18: Tetratricopep 96.2 0.14 2.9E-06 40.7 11.1 119 310-445 14-135 (142)
237 KOG2114 Vacuolar assembly/sort 96.1 1.9 4.2E-05 44.2 24.0 173 48-231 340-516 (933)
238 PF13424 TPR_12: Tetratricopep 96.1 0.019 4.2E-07 40.8 6.0 60 379-438 7-75 (78)
239 COG4105 ComL DNA uptake lipopr 96.1 0.58 1.3E-05 41.1 15.8 56 415-470 173-231 (254)
240 COG3118 Thioredoxin domain-con 96.1 0.77 1.7E-05 41.1 16.6 173 293-467 121-296 (304)
241 KOG3941 Intermediate in Toll s 96.1 0.054 1.2E-06 47.5 9.2 111 60-170 52-186 (406)
242 PRK15331 chaperone protein Sic 96.0 0.21 4.5E-06 40.6 11.6 91 315-408 46-136 (165)
243 PF03704 BTAD: Bacterial trans 96.0 0.052 1.1E-06 44.2 8.7 71 76-147 65-140 (146)
244 PF02259 FAT: FAT domain; Int 95.9 1.7 3.7E-05 41.4 21.6 151 304-456 144-305 (352)
245 COG1729 Uncharacterized protei 95.9 0.077 1.7E-06 46.8 9.4 92 309-403 145-241 (262)
246 PF09205 DUF1955: Domain of un 95.8 0.66 1.4E-05 36.0 17.4 141 316-475 12-152 (161)
247 KOG4555 TPR repeat-containing 95.8 0.1 2.2E-06 40.2 8.4 119 384-516 50-174 (175)
248 PF07719 TPR_2: Tetratricopept 95.7 0.036 7.9E-07 31.7 4.8 32 411-442 3-34 (34)
249 KOG1258 mRNA processing protei 95.6 2.6 5.6E-05 41.7 26.5 136 72-210 44-187 (577)
250 smart00299 CLH Clathrin heavy 95.6 0.96 2.1E-05 36.4 14.8 128 74-216 8-136 (140)
251 PRK11906 transcriptional regul 95.5 1.1 2.4E-05 43.0 16.4 67 406-472 335-401 (458)
252 PF00515 TPR_1: Tetratricopept 95.5 0.036 7.7E-07 31.8 4.2 32 410-441 2-33 (34)
253 PF12921 ATP13: Mitochondrial 95.4 0.2 4.4E-06 39.2 9.5 28 340-367 1-28 (126)
254 PF04053 Coatomer_WDAD: Coatom 95.4 0.79 1.7E-05 44.8 15.4 156 283-468 269-427 (443)
255 PF04053 Coatomer_WDAD: Coatom 95.4 0.68 1.5E-05 45.2 14.9 133 81-235 269-403 (443)
256 COG0457 NrfG FOG: TPR repeat [ 95.3 1.8 3.8E-05 37.9 28.3 194 276-471 60-264 (291)
257 smart00299 CLH Clathrin heavy 95.3 1.2 2.7E-05 35.7 15.7 127 309-455 10-137 (140)
258 KOG1941 Acetylcholine receptor 95.2 0.51 1.1E-05 43.3 12.2 163 206-368 84-273 (518)
259 PF13428 TPR_14: Tetratricopep 95.1 0.064 1.4E-06 33.0 4.7 30 443-472 1-30 (44)
260 KOG1941 Acetylcholine receptor 95.1 1.5 3.3E-05 40.3 14.8 122 347-468 128-271 (518)
261 COG3629 DnrI DNA-binding trans 95.0 0.15 3.3E-06 45.7 8.5 61 411-471 155-215 (280)
262 KOG2114 Vacuolar assembly/sort 95.0 3.2 6.9E-05 42.7 18.1 177 176-367 336-516 (933)
263 KOG4555 TPR repeat-containing 94.9 0.098 2.1E-06 40.2 6.1 57 417-473 51-107 (175)
264 KOG1585 Protein required for f 94.9 2.4 5.1E-05 36.9 16.6 141 308-467 93-251 (308)
265 PF10345 Cohesin_load: Cohesin 94.8 6 0.00013 41.0 27.2 122 48-170 106-252 (608)
266 PF04184 ST7: ST7 protein; In 94.8 3.2 6.9E-05 40.3 16.7 99 343-441 261-378 (539)
267 KOG2063 Vacuolar assembly/sort 94.6 4 8.6E-05 43.1 18.5 54 48-101 313-374 (877)
268 KOG1585 Protein required for f 94.5 3 6.4E-05 36.4 14.4 54 309-363 193-249 (308)
269 COG4649 Uncharacterized protei 94.5 0.37 8E-06 39.3 8.5 129 73-202 59-195 (221)
270 COG4105 ComL DNA uptake lipopr 94.4 3.3 7.1E-05 36.5 18.5 177 78-268 39-232 (254)
271 KOG2610 Uncharacterized conser 94.4 1.6 3.5E-05 39.7 13.3 146 320-468 117-272 (491)
272 KOG2610 Uncharacterized conser 94.4 1 2.3E-05 40.9 12.0 145 85-230 115-272 (491)
273 COG4785 NlpI Lipoprotein NlpI, 94.3 2.9 6.4E-05 35.7 13.8 159 307-473 100-267 (297)
274 KOG4234 TPR repeat-containing 94.2 0.49 1.1E-05 39.6 9.0 57 416-472 141-197 (271)
275 COG2976 Uncharacterized protei 94.1 1.9 4.2E-05 36.1 12.2 90 349-440 97-190 (207)
276 PF07035 Mic1: Colon cancer-as 94.0 2.9 6.3E-05 34.5 13.1 129 132-268 18-148 (167)
277 KOG3941 Intermediate in Toll s 94.0 0.56 1.2E-05 41.5 9.3 99 294-393 53-174 (406)
278 PF04184 ST7: ST7 protein; In 93.9 1.5 3.2E-05 42.4 12.7 57 381-437 263-323 (539)
279 KOG1920 IkappaB kinase complex 93.8 12 0.00026 40.5 22.4 152 188-367 894-1052(1265)
280 PF13176 TPR_7: Tetratricopept 93.7 0.16 3.4E-06 29.6 4.0 26 445-470 1-26 (36)
281 COG4649 Uncharacterized protei 93.7 2.4 5.3E-05 34.7 11.7 128 308-437 61-195 (221)
282 PF07035 Mic1: Colon cancer-as 93.7 3.2 7E-05 34.2 12.8 133 94-234 15-149 (167)
283 COG2976 Uncharacterized protei 93.6 3.9 8.5E-05 34.4 14.3 90 383-473 95-189 (207)
284 PF10300 DUF3808: Protein of u 93.5 4.9 0.00011 39.9 16.5 15 54-68 8-22 (468)
285 PF13181 TPR_8: Tetratricopept 93.3 0.18 4E-06 28.7 3.9 31 411-441 3-33 (34)
286 PF00637 Clathrin: Region in C 93.3 0.25 5.4E-06 40.0 6.0 84 114-200 13-96 (143)
287 PF13176 TPR_7: Tetratricopept 93.2 0.17 3.6E-06 29.5 3.6 27 411-437 1-27 (36)
288 PF10602 RPN7: 26S proteasome 93.2 2.7 5.8E-05 35.4 12.1 59 309-367 39-99 (177)
289 PF08631 SPO22: Meiosis protei 93.1 6.8 0.00015 35.9 23.3 18 419-436 256-273 (278)
290 COG0457 NrfG FOG: TPR repeat [ 92.9 5.8 0.00013 34.5 26.9 197 241-441 60-268 (291)
291 KOG4234 TPR repeat-containing 92.7 3.1 6.8E-05 35.0 11.2 102 351-452 105-211 (271)
292 PF08631 SPO22: Meiosis protei 92.6 8.2 0.00018 35.4 22.1 17 315-331 255-271 (278)
293 PF09613 HrpB1_HrpK: Bacterial 92.5 5 0.00011 32.7 12.6 51 352-404 21-71 (160)
294 KOG0890 Protein kinase of the 92.4 28 0.0006 40.9 23.7 148 113-264 1388-1542(2382)
295 PF09613 HrpB1_HrpK: Bacterial 92.2 1.3 2.9E-05 35.9 8.5 82 378-459 8-94 (160)
296 PF04097 Nic96: Nup93/Nic96; 92.1 16 0.00034 37.9 18.3 65 72-138 111-182 (613)
297 PF09205 DUF1955: Domain of un 92.0 4.9 0.00011 31.4 12.6 63 308-372 88-150 (161)
298 PF13374 TPR_10: Tetratricopep 91.9 0.42 9E-06 28.6 4.4 27 411-437 4-30 (42)
299 PF07719 TPR_2: Tetratricopept 91.9 0.39 8.4E-06 27.2 4.0 30 443-472 1-30 (34)
300 TIGR02561 HrpB1_HrpK type III 91.8 1.3 2.8E-05 35.4 7.8 80 379-458 9-93 (153)
301 COG1747 Uncharacterized N-term 91.8 14 0.0003 36.2 22.8 174 274-454 65-250 (711)
302 COG2909 MalT ATP-dependent tra 91.7 20 0.00042 37.7 26.9 217 249-468 424-684 (894)
303 COG4785 NlpI Lipoprotein NlpI, 91.7 7.9 0.00017 33.2 16.3 158 73-235 99-267 (297)
304 KOG1464 COP9 signalosome, subu 91.6 9.3 0.0002 33.9 19.0 220 208-434 68-328 (440)
305 KOG4648 Uncharacterized conser 91.5 0.92 2E-05 41.3 7.5 95 349-445 105-201 (536)
306 PF13170 DUF4003: Protein of u 91.4 5.3 0.00012 36.8 12.7 94 291-387 119-227 (297)
307 PRK11619 lytic murein transgly 91.4 20 0.00043 37.3 34.1 400 55-477 79-510 (644)
308 KOG2066 Vacuolar assembly/sort 91.3 20 0.00043 37.0 27.0 147 80-233 363-533 (846)
309 KOG1920 IkappaB kinase complex 91.2 26 0.00056 38.2 25.2 52 348-403 972-1025(1265)
310 PF13174 TPR_6: Tetratricopept 91.2 0.44 9.5E-06 26.7 3.7 27 415-441 6-32 (33)
311 PF00515 TPR_1: Tetratricopept 91.2 0.51 1.1E-05 26.8 4.0 30 443-472 1-30 (34)
312 PF10602 RPN7: 26S proteasome 90.8 3.9 8.4E-05 34.4 10.4 93 276-368 37-140 (177)
313 PF02284 COX5A: Cytochrome c o 90.7 4.8 0.0001 29.7 9.1 71 314-386 16-88 (108)
314 PRK09687 putative lyase; Provi 90.4 14 0.00031 33.8 27.0 73 376-453 205-277 (280)
315 KOG1586 Protein required for f 90.4 11 0.00025 32.7 15.6 21 423-443 209-229 (288)
316 PF13170 DUF4003: Protein of u 90.3 15 0.00032 33.9 14.6 150 221-372 78-252 (297)
317 KOG0890 Protein kinase of the 90.1 46 0.001 39.3 24.8 316 148-475 1388-1734(2382)
318 PF00637 Clathrin: Region in C 90.0 0.39 8.4E-06 38.8 3.7 84 79-169 13-96 (143)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 2.7 5.8E-05 30.7 7.3 62 322-385 23-84 (103)
320 PF02259 FAT: FAT domain; Int 89.9 18 0.0004 34.3 20.3 54 211-268 4-57 (352)
321 PF14853 Fis1_TPR_C: Fis1 C-te 89.7 2.6 5.7E-05 27.0 6.5 51 445-521 3-53 (53)
322 PF07721 TPR_4: Tetratricopept 89.6 0.58 1.3E-05 24.7 3.0 24 444-467 2-25 (26)
323 TIGR02508 type_III_yscG type I 89.5 6.4 0.00014 29.0 8.9 51 183-235 48-98 (115)
324 PF10345 Cohesin_load: Cohesin 89.3 30 0.00064 36.0 25.6 176 91-267 39-252 (608)
325 KOG2396 HAT (Half-A-TPR) repea 89.1 24 0.00051 34.5 31.5 240 222-470 299-557 (568)
326 PF11207 DUF2989: Protein of u 89.0 3.9 8.5E-05 34.7 8.8 72 90-162 123-197 (203)
327 COG3629 DnrI DNA-binding trans 88.9 3.7 8.1E-05 37.1 9.2 76 76-152 156-236 (280)
328 PF13174 TPR_6: Tetratricopept 88.5 0.78 1.7E-05 25.6 3.3 28 445-472 2-29 (33)
329 KOG2396 HAT (Half-A-TPR) repea 88.4 3.4 7.4E-05 39.9 9.0 94 357-452 87-183 (568)
330 KOG4648 Uncharacterized conser 88.1 2.6 5.5E-05 38.6 7.6 92 313-408 104-197 (536)
331 PF13374 TPR_10: Tetratricopep 88.0 1.1 2.4E-05 26.7 4.0 30 443-472 2-31 (42)
332 KOG4642 Chaperone-dependent E3 87.9 2.4 5.1E-05 36.8 6.9 50 420-469 55-104 (284)
333 PRK09687 putative lyase; Provi 87.9 22 0.00047 32.6 26.9 73 274-351 205-277 (280)
334 KOG0276 Vesicle coat complex C 87.9 9.7 0.00021 37.9 11.7 150 286-468 597-746 (794)
335 PF06552 TOM20_plant: Plant sp 87.5 7.1 0.00015 32.5 9.2 64 406-476 65-140 (186)
336 PF13431 TPR_17: Tetratricopep 87.5 1.1 2.4E-05 25.6 3.4 31 132-163 3-33 (34)
337 PRK10941 hypothetical protein; 87.5 7.6 0.00016 35.2 10.3 63 411-473 183-245 (269)
338 PF13181 TPR_8: Tetratricopept 87.3 1.6 3.5E-05 24.6 4.1 28 444-471 2-29 (34)
339 KOG4570 Uncharacterized conser 87.3 2 4.2E-05 38.9 6.3 90 48-138 70-165 (418)
340 PF14853 Fis1_TPR_C: Fis1 C-te 87.3 1.2 2.6E-05 28.6 3.8 33 414-446 6-38 (53)
341 TIGR03504 FimV_Cterm FimV C-te 87.1 1.4 2.9E-05 27.0 3.7 27 447-473 3-29 (44)
342 KOG1550 Extracellular protein 86.8 40 0.00086 34.5 16.6 16 424-439 379-394 (552)
343 PRK15180 Vi polysaccharide bio 86.7 13 0.00029 35.9 11.6 123 353-478 301-426 (831)
344 KOG2066 Vacuolar assembly/sort 86.5 43 0.00094 34.7 25.8 30 277-306 507-536 (846)
345 KOG3364 Membrane protein invol 85.9 14 0.00031 29.0 9.5 72 374-445 29-107 (149)
346 PF14561 TPR_20: Tetratricopep 85.8 3.7 8.1E-05 29.9 6.2 41 432-472 11-51 (90)
347 KOG2034 Vacuolar sorting prote 85.6 52 0.0011 34.7 19.7 270 50-333 366-688 (911)
348 smart00028 TPR Tetratricopepti 85.4 1.9 4.2E-05 23.1 3.9 29 412-440 4-32 (34)
349 PF11207 DUF2989: Protein of u 84.9 9.8 0.00021 32.4 9.0 73 323-396 123-197 (203)
350 TIGR02561 HrpB1_HrpK type III 84.7 19 0.00041 29.0 12.4 50 353-404 22-71 (153)
351 KOG4279 Serine/threonine prote 84.5 31 0.00067 35.6 13.4 176 257-442 180-399 (1226)
352 smart00386 HAT HAT (Half-A-TPR 84.5 2.6 5.7E-05 23.2 4.1 30 423-452 1-30 (33)
353 KOG1586 Protein required for f 84.2 28 0.00061 30.4 18.7 61 312-373 119-185 (288)
354 KOG0276 Vesicle coat complex C 83.6 33 0.00071 34.5 12.9 98 186-300 649-746 (794)
355 KOG2063 Vacuolar assembly/sort 83.1 48 0.001 35.5 14.9 28 74-101 505-532 (877)
356 COG1747 Uncharacterized N-term 82.1 55 0.0012 32.3 21.1 175 238-418 64-248 (711)
357 KOG3824 Huntingtin interacting 81.3 6.9 0.00015 35.4 7.0 84 419-514 126-209 (472)
358 PF07721 TPR_4: Tetratricopept 81.1 3.3 7.1E-05 21.8 3.3 19 382-400 6-24 (26)
359 PF02284 COX5A: Cytochrome c o 80.9 14 0.00031 27.4 7.3 60 223-283 28-87 (108)
360 KOG2300 Uncharacterized conser 80.8 59 0.0013 31.8 31.1 152 315-467 332-509 (629)
361 PRK12798 chemotaxis protein; R 80.4 57 0.0012 31.4 22.9 182 288-471 125-323 (421)
362 KOG4077 Cytochrome c oxidase, 79.8 13 0.00029 28.7 7.1 60 324-385 67-126 (149)
363 COG4455 ImpE Protein of avirul 79.7 16 0.00034 31.5 8.3 76 76-152 4-81 (273)
364 KOG4570 Uncharacterized conser 78.8 11 0.00023 34.4 7.4 99 71-171 62-163 (418)
365 COG3947 Response regulator con 78.5 15 0.00032 33.2 8.1 60 411-470 281-340 (361)
366 KOG1464 COP9 signalosome, subu 77.8 52 0.0011 29.4 16.8 187 217-403 39-258 (440)
367 smart00028 TPR Tetratricopepti 77.7 5 0.00011 21.3 3.7 29 444-472 2-30 (34)
368 PF10579 Rapsyn_N: Rapsyn N-te 77.4 10 0.00023 26.5 5.5 44 319-362 19-64 (80)
369 PF06552 TOM20_plant: Plant sp 77.1 5.2 0.00011 33.2 4.7 34 425-458 51-84 (186)
370 PF08311 Mad3_BUB1_I: Mad3/BUB 77.0 29 0.00063 27.2 8.8 42 427-468 81-124 (126)
371 COG4455 ImpE Protein of avirul 76.4 12 0.00027 32.1 6.7 73 380-452 4-81 (273)
372 KOG0545 Aryl-hydrocarbon recep 75.9 18 0.0004 31.7 7.8 52 419-470 240-291 (329)
373 PF14669 Asp_Glu_race_2: Putat 75.8 48 0.001 28.0 14.5 176 103-299 3-205 (233)
374 PF10579 Rapsyn_N: Rapsyn N-te 75.7 8.4 0.00018 27.0 4.7 47 353-399 18-65 (80)
375 TIGR02508 type_III_yscG type I 75.4 31 0.00066 25.6 9.4 61 282-345 46-106 (115)
376 KOG1550 Extracellular protein 74.5 1.1E+02 0.0023 31.4 24.3 271 190-473 228-539 (552)
377 COG5159 RPN6 26S proteasome re 74.4 67 0.0015 29.1 14.4 158 210-367 8-191 (421)
378 KOG4567 GTPase-activating prot 73.4 54 0.0012 30.0 10.2 73 326-404 263-345 (370)
379 KOG1308 Hsp70-interacting prot 73.3 2.6 5.6E-05 38.7 2.3 114 353-469 126-241 (377)
380 PF07163 Pex26: Pex26 protein; 72.6 56 0.0012 29.5 10.1 17 212-228 90-106 (309)
381 TIGR03504 FimV_Cterm FimV C-te 72.6 9.8 0.00021 23.3 4.0 24 312-335 5-28 (44)
382 PF09670 Cas_Cas02710: CRISPR- 72.4 82 0.0018 30.4 12.4 49 318-367 143-195 (379)
383 PF04910 Tcf25: Transcriptiona 72.0 95 0.0021 29.7 14.0 57 415-471 109-167 (360)
384 PF04190 DUF410: Protein of un 71.8 78 0.0017 28.6 16.7 82 274-370 89-170 (260)
385 PF04190 DUF410: Protein of un 71.7 78 0.0017 28.6 16.2 27 175-201 91-117 (260)
386 PF12862 Apc5: Anaphase-promot 71.7 15 0.00032 27.0 5.7 54 419-472 8-70 (94)
387 KOG4507 Uncharacterized conser 71.3 12 0.00025 37.2 6.2 91 111-201 215-310 (886)
388 cd00923 Cyt_c_Oxidase_Va Cytoc 70.8 40 0.00086 24.9 9.5 47 221-267 23-69 (103)
389 KOG3807 Predicted membrane pro 70.8 61 0.0013 29.9 10.1 50 315-366 284-336 (556)
390 PF13934 ELYS: Nuclear pore co 70.7 60 0.0013 28.6 10.2 116 342-465 77-198 (226)
391 PF07163 Pex26: Pex26 protein; 70.5 67 0.0014 29.0 10.1 49 351-400 128-181 (309)
392 PF13762 MNE1: Mitochondrial s 70.1 26 0.00057 28.1 7.0 80 76-155 42-127 (145)
393 cd08326 CARD_CASP9 Caspase act 69.9 12 0.00027 26.8 4.7 62 31-92 18-80 (84)
394 KOG0376 Serine-threonine phosp 69.5 4.1 9E-05 39.2 2.8 102 348-452 11-115 (476)
395 cd08819 CARD_MDA5_2 Caspase ac 69.1 40 0.00087 24.3 7.2 39 287-326 48-86 (88)
396 PF09477 Type_III_YscG: Bacter 68.8 47 0.001 25.0 10.1 79 121-202 19-97 (116)
397 cd08332 CARD_CASP2 Caspase act 68.2 12 0.00027 27.2 4.5 59 30-88 21-80 (90)
398 COG3947 Response regulator con 68.0 28 0.00061 31.5 7.3 52 81-133 287-338 (361)
399 PRK13342 recombination factor 67.5 1.3E+02 0.0028 29.5 13.5 113 124-250 153-275 (413)
400 KOG1498 26S proteasome regulat 67.4 1.2E+02 0.0025 29.0 13.4 208 288-496 25-265 (439)
401 PF14561 TPR_20: Tetratricopep 66.9 47 0.001 24.2 8.0 53 408-460 21-75 (90)
402 KOG0686 COP9 signalosome, subu 66.5 1.3E+02 0.0027 29.0 13.8 156 75-234 152-333 (466)
403 PF02184 HAT: HAT (Half-A-TPR) 65.8 17 0.00036 20.5 3.6 27 424-451 2-28 (32)
404 PRK13800 putative oxidoreducta 64.9 2.2E+02 0.0049 31.3 26.3 245 105-368 632-879 (897)
405 PRK13800 putative oxidoreducta 64.5 2.3E+02 0.0049 31.3 29.8 254 195-470 625-879 (897)
406 PF11846 DUF3366: Domain of un 64.3 20 0.00043 30.7 5.9 36 405-440 140-175 (193)
407 KOG0551 Hsp90 co-chaperone CNS 64.2 45 0.00097 30.9 8.0 87 382-468 86-178 (390)
408 KOG4507 Uncharacterized conser 64.1 37 0.0008 34.0 7.9 83 390-472 620-705 (886)
409 KOG3364 Membrane protein invol 63.8 57 0.0012 25.8 7.4 65 338-402 29-96 (149)
410 PHA02875 ankyrin repeat protei 63.7 95 0.002 30.3 11.3 48 152-199 108-157 (413)
411 PF10366 Vps39_1: Vacuolar sor 63.1 39 0.00085 25.6 6.5 27 308-334 41-67 (108)
412 KOG0889 Histone acetyltransfer 62.9 4.1E+02 0.009 33.7 17.7 50 48-100 2460-2509(3550)
413 PRK12798 chemotaxis protein; R 62.7 1.5E+02 0.0033 28.6 19.6 195 276-473 82-287 (421)
414 PRK10941 hypothetical protein; 62.5 1.1E+02 0.0023 27.9 10.3 79 308-388 183-262 (269)
415 KOG0403 Neoplastic transformat 62.2 1.6E+02 0.0034 28.7 15.2 57 344-402 512-568 (645)
416 PF14863 Alkyl_sulf_dimr: Alky 61.8 53 0.0012 26.3 7.4 62 394-458 58-119 (141)
417 PF10255 Paf67: RNA polymerase 61.4 51 0.0011 31.8 8.4 56 381-436 126-191 (404)
418 KOG4077 Cytochrome c oxidase, 61.2 50 0.0011 25.7 6.6 43 94-136 70-112 (149)
419 PF04097 Nic96: Nup93/Nic96; 61.2 2.1E+02 0.0046 29.8 26.0 55 48-102 117-181 (613)
420 PF13762 MNE1: Mitochondrial s 60.9 87 0.0019 25.2 8.7 84 38-122 28-129 (145)
421 PF09477 Type_III_YscG: Bacter 60.6 71 0.0015 24.1 8.6 78 256-336 22-99 (116)
422 PF11663 Toxin_YhaV: Toxin wit 60.5 11 0.00023 29.6 3.1 35 82-118 104-138 (140)
423 PF09986 DUF2225: Uncharacteri 60.5 60 0.0013 28.3 8.1 48 427-474 143-196 (214)
424 COG4976 Predicted methyltransf 60.4 21 0.00046 31.0 5.0 53 420-472 6-58 (287)
425 KOG0376 Serine-threonine phosp 58.9 20 0.00043 34.8 5.1 102 313-419 11-115 (476)
426 PF07720 TPR_3: Tetratricopept 58.1 35 0.00076 19.8 4.7 18 414-431 6-23 (36)
427 PF11846 DUF3366: Domain of un 56.5 38 0.00082 28.9 6.3 29 375-403 142-170 (193)
428 KOG1308 Hsp70-interacting prot 54.4 15 0.00034 33.9 3.5 57 418-474 157-213 (377)
429 COG0790 FOG: TPR repeat, SEL1 54.3 1.8E+02 0.0038 26.7 20.4 78 395-475 173-269 (292)
430 PF14669 Asp_Glu_race_2: Putat 54.3 1.4E+02 0.003 25.4 14.3 56 413-468 136-206 (233)
431 PF12862 Apc5: Anaphase-promot 53.6 86 0.0019 22.9 7.5 20 349-368 49-68 (94)
432 cd08323 CARD_APAF1 Caspase act 52.5 44 0.00096 24.1 5.0 62 31-92 16-78 (86)
433 KOG0686 COP9 signalosome, subu 52.3 2.3E+02 0.0049 27.4 15.0 58 277-334 152-215 (466)
434 cd08819 CARD_MDA5_2 Caspase ac 52.2 87 0.0019 22.6 6.9 35 155-190 48-82 (88)
435 PF11838 ERAP1_C: ERAP1-like C 52.1 2E+02 0.0044 26.8 18.2 111 357-468 146-262 (324)
436 PF11848 DUF3368: Domain of un 51.2 59 0.0013 20.3 4.9 32 84-115 13-44 (48)
437 PRK10564 maltose regulon perip 50.9 34 0.00073 31.3 5.1 41 308-348 259-299 (303)
438 COG2909 MalT ATP-dependent tra 50.9 3.5E+02 0.0075 29.1 30.5 218 184-402 425-684 (894)
439 KOG2297 Predicted translation 50.6 72 0.0016 29.2 6.9 20 206-225 322-341 (412)
440 KOG4814 Uncharacterized conser 50.0 2.7E+02 0.0058 28.7 11.2 84 389-472 366-457 (872)
441 PF10366 Vps39_1: Vacuolar sor 49.9 1.1E+02 0.0024 23.2 9.8 27 207-233 41-67 (108)
442 PF09670 Cas_Cas02710: CRISPR- 49.6 2.2E+02 0.0047 27.6 10.7 55 82-137 140-198 (379)
443 PF00244 14-3-3: 14-3-3 protei 49.5 1.9E+02 0.0041 25.7 12.8 162 312-474 7-200 (236)
444 smart00777 Mad3_BUB1_I Mad3/BU 49.3 1.3E+02 0.0028 23.6 8.5 41 428-468 82-124 (125)
445 COG4941 Predicted RNA polymera 48.8 2.3E+02 0.0051 26.5 10.4 119 321-444 271-400 (415)
446 PRK10564 maltose regulon perip 48.6 33 0.00072 31.3 4.7 36 76-111 260-295 (303)
447 COG5191 Uncharacterized conser 48.0 22 0.00049 32.4 3.5 82 371-452 101-185 (435)
448 PF15297 CKAP2_C: Cytoskeleton 47.9 1.1E+02 0.0024 28.6 7.9 29 411-439 142-170 (353)
449 KOG4567 GTPase-activating prot 47.1 2.3E+02 0.0049 26.2 9.4 85 129-214 264-358 (370)
450 PF04090 RNA_pol_I_TF: RNA pol 46.5 1.9E+02 0.0041 24.8 12.8 28 308-335 43-70 (199)
451 TIGR02270 conserved hypothetic 46.1 3E+02 0.0064 27.0 24.6 43 142-184 99-141 (410)
452 PF14689 SPOB_a: Sensor_kinase 45.7 55 0.0012 21.8 4.3 25 446-470 26-50 (62)
453 PHA02537 M terminase endonucle 45.1 2.2E+02 0.0048 25.2 9.8 21 421-441 190-210 (230)
454 COG0735 Fur Fe2+/Zn2+ uptake r 45.0 1.3E+02 0.0028 24.3 7.2 63 95-158 8-70 (145)
455 KOG2581 26S proteasome regulat 44.1 3.1E+02 0.0066 26.5 15.2 122 319-441 139-279 (493)
456 PF11817 Foie-gras_1: Foie gra 43.7 1.8E+02 0.004 26.0 8.8 55 415-469 184-244 (247)
457 COG5191 Uncharacterized conser 43.6 64 0.0014 29.6 5.6 79 338-417 104-184 (435)
458 PHA02875 ankyrin repeat protei 43.5 3.2E+02 0.007 26.6 15.7 181 48-239 38-229 (413)
459 PF08424 NRDE-2: NRDE-2, neces 43.5 2.8E+02 0.0062 26.0 17.1 133 304-439 17-184 (321)
460 PF08311 Mad3_BUB1_I: Mad3/BUB 42.4 1.7E+02 0.0036 23.0 8.8 43 359-401 81-123 (126)
461 PF14689 SPOB_a: Sensor_kinase 42.4 43 0.00094 22.3 3.4 29 141-169 21-49 (62)
462 cd00280 TRFH Telomeric Repeat 42.3 1.3E+02 0.0027 25.4 6.6 18 351-368 121-138 (200)
463 PF04910 Tcf25: Transcriptiona 42.1 3.2E+02 0.0069 26.2 18.1 124 140-267 37-166 (360)
464 COG2912 Uncharacterized conser 41.9 90 0.002 28.1 6.2 56 417-472 189-244 (269)
465 KOG1498 26S proteasome regulat 41.5 3.3E+02 0.0072 26.2 14.6 93 311-403 136-238 (439)
466 PF10255 Paf67: RNA polymerase 41.3 1.8E+02 0.0039 28.2 8.6 55 178-232 126-191 (404)
467 KOG2659 LisH motif-containing 40.6 2.5E+02 0.0055 24.6 8.8 91 309-402 29-128 (228)
468 PF11663 Toxin_YhaV: Toxin wit 40.5 33 0.00072 27.0 2.9 25 216-240 106-130 (140)
469 COG4976 Predicted methyltransf 40.4 59 0.0013 28.4 4.7 53 389-441 7-61 (287)
470 cd08326 CARD_CASP9 Caspase act 40.1 89 0.0019 22.4 4.9 29 190-218 46-74 (84)
471 cd00280 TRFH Telomeric Repeat 39.9 2.3E+02 0.005 24.0 10.9 27 418-445 120-146 (200)
472 KOG0687 26S proteasome regulat 39.3 3.3E+02 0.0071 25.5 14.6 23 344-366 107-129 (393)
473 PF11123 DNA_Packaging_2: DNA 39.2 1E+02 0.0022 21.3 4.6 16 457-472 59-74 (82)
474 PF14432 DYW_deaminase: DYW fa 38.8 25 0.00055 27.1 2.1 27 479-509 2-28 (116)
475 PF10475 DUF2450: Protein of u 38.5 3.1E+02 0.0067 25.3 9.6 50 182-233 106-155 (291)
476 PF09986 DUF2225: Uncharacteri 38.4 2.7E+02 0.0059 24.3 9.2 20 383-402 171-190 (214)
477 PRK09857 putative transposase; 38.3 2.1E+02 0.0047 26.4 8.5 64 414-477 211-274 (292)
478 PF11848 DUF3368: Domain of un 37.9 1E+02 0.0022 19.2 5.3 32 317-348 13-44 (48)
479 TIGR02270 conserved hypothetic 37.7 4E+02 0.0087 26.1 24.4 57 274-331 160-216 (410)
480 KOG4642 Chaperone-dependent E3 37.1 3E+02 0.0066 24.5 10.2 82 353-437 22-106 (284)
481 PF10155 DUF2363: Uncharacteri 36.7 2.1E+02 0.0045 22.5 10.7 111 56-169 3-124 (126)
482 PF10475 DUF2450: Protein of u 36.7 3E+02 0.0064 25.4 9.2 23 406-428 194-216 (291)
483 COG0735 Fur Fe2+/Zn2+ uptake r 36.6 1.4E+02 0.0029 24.2 6.1 47 76-122 23-69 (145)
484 cd07153 Fur_like Ferric uptake 36.0 85 0.0018 23.9 4.8 44 79-122 6-49 (116)
485 COG2256 MGS1 ATPase related to 35.6 4.2E+02 0.0092 25.7 11.9 52 203-254 244-298 (436)
486 PF11817 Foie-gras_1: Foie gra 35.3 1.2E+02 0.0027 27.1 6.4 17 351-367 188-204 (247)
487 KOG0530 Protein farnesyltransf 35.1 3.4E+02 0.0075 24.5 14.5 87 393-479 94-183 (318)
488 KOG2422 Uncharacterized conser 35.1 5.1E+02 0.011 26.5 12.0 144 72-215 283-460 (665)
489 PRK11639 zinc uptake transcrip 34.9 1.3E+02 0.0027 25.2 5.9 60 100-160 18-77 (169)
490 KOG1811 Predicted Zn2+-binding 34.9 5.1E+02 0.011 26.5 12.0 73 25-102 544-616 (1141)
491 PRK14700 recombination factor 34.8 3.7E+02 0.0081 24.8 9.6 51 204-254 122-175 (300)
492 cd01671 CARD Caspase activatio 34.7 88 0.0019 21.8 4.4 58 30-87 14-72 (80)
493 PF06957 COPI_C: Coatomer (COP 34.5 2.2E+02 0.0047 27.9 8.0 44 399-442 288-333 (422)
494 KOG4521 Nuclear pore complex, 34.5 7.1E+02 0.015 28.0 16.3 156 282-441 927-1135(1480)
495 cd08330 CARD_ASC_NALP1 Caspase 34.3 89 0.0019 22.3 4.2 55 30-84 16-71 (82)
496 PF12069 DUF3549: Protein of u 34.3 4.1E+02 0.0088 25.1 17.7 94 179-275 171-265 (340)
497 PRK15180 Vi polysaccharide bio 34.2 4.8E+02 0.01 25.9 27.1 115 117-233 298-419 (831)
498 PF07064 RIC1: RIC1; InterPro 33.2 3.7E+02 0.008 24.3 14.0 28 74-101 83-110 (258)
499 KOG0292 Vesicle coat complex C 32.5 2.3E+02 0.0051 30.3 8.1 131 49-201 650-780 (1202)
500 cd08329 CARD_BIRC2_BIRC3 Caspa 32.3 1.1E+02 0.0023 22.6 4.4 61 31-94 25-88 (94)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-71 Score=587.04 Aligned_cols=491 Identities=35% Similarity=0.636 Sum_probs=459.6
Q ss_pred CCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHh
Q 009967 26 NYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRM 99 (521)
Q Consensus 26 ~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 99 (521)
+.....+++|..+.+.| +.++ |+.+|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|
T Consensus 201 ~~~~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 201 PDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred cchhhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 35555678999999999 8887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHH
Q 009967 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT 179 (521)
Q Consensus 100 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 179 (521)
.+.|+.||..||+.++.+|...|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|..||..+|+.
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHcCCCHHHHHHHHhhC-----------------------------------------------------------
Q 009967 180 MICGLLKRERFEDALKLFQEM----------------------------------------------------------- 200 (521)
Q Consensus 180 li~~~~~~g~~~~a~~~~~~~----------------------------------------------------------- 200 (521)
++.+|++.|++++|.++|++|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 887777776666666666654
Q ss_pred -----------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 009967 201 -----------PHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF 269 (521)
Q Consensus 201 -----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 269 (521)
.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+.
T Consensus 440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 345555666666666677777777777777765 58899999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009967 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349 (521)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 349 (521)
|..++..++++|+++|++.|++++|.++|+.+ ++|..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009967 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 429 (521)
+|.+.|++++|.++|+.|.+..++.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999987899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHH
Q 009967 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509 (521)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 509 (521)
...+++.++.|+++..|..+++.|...|+|++|.++.+.|++.|+.++||+||+++++.+|.|..++++||...+|+.+|
T Consensus 678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l 757 (857)
T PLN03077 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757 (857)
T ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 009967 510 RSCTEQIREF 519 (521)
Q Consensus 510 ~~~~~~~~~~ 519 (521)
+.+..++++.
T Consensus 758 ~~l~~~~~~~ 767 (857)
T PLN03077 758 EGFYEKMKAS 767 (857)
T ss_pred HHHHHHHHhC
Confidence 9999999864
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-70 Score=565.23 Aligned_cols=490 Identities=29% Similarity=0.477 Sum_probs=455.4
Q ss_pred CCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCC----CCCcccHHHHHHHHHhcCChHHHHHH
Q 009967 26 NYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVP----DLNVVSATTIIGRFAKQHHYEEAIYL 95 (521)
Q Consensus 26 ~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (521)
+...++..++..+...+.+.++ ++.+|++.|+++.|.+++..+. .||..+||.++..|++.|++++|.++
T Consensus 101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH
Confidence 3445555666666654324444 8888888888888888887764 47888888888888888888888888
Q ss_pred HHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----
Q 009967 96 FSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---- 171 (521)
Q Consensus 96 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---- 171 (521)
|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..+.+
T Consensus 181 f~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 181 FDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred HhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence 88885 4788888888888888888888888888888888888888888888888888888888888766653
Q ss_pred CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 009967 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251 (521)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 251 (521)
+|..+|+.++.+|++.|++++|.++|++|.++|+.+||.++.+|++.|++++|+++|++|...|+.||..||+.++.+|+
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 331 (521)
+.|+++.|.+++..+.+.|..|+..++++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH
Q 009967 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF 411 (521)
Q Consensus 332 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 411 (521)
|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..++.|+..+|+.++++|++.|++++|.+++++++..|+..+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEE
Q 009967 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHV 491 (521)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~ 491 (521)
|+.|+.+|...|+++.|..+++++.+..|++..+|..++++|.+.|++++|.+++++|.+.|+.+.|++||+.+.+.+|.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHHHHhc
Q 009967 492 FVTGDRNHHMNDEIYAVLRSCTEQIREF 519 (521)
Q Consensus 492 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 519 (521)
|++++.+||...+|+..+..+..++++.
T Consensus 577 f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 604 (697)
T PLN03081 577 FFSGDRLHPQSREIYQKLDELMKEISEY 604 (697)
T ss_pred EccCCCCCccHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999863
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.4e-61 Score=507.16 Aligned_cols=449 Identities=25% Similarity=0.431 Sum_probs=411.9
Q ss_pred CCCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 009967 25 PNYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSR 98 (521)
Q Consensus 25 ~~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (521)
.+.+....++|..+.+.| ..++ ++..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++
T Consensus 99 ~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~ 177 (857)
T PLN03077 99 KRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177 (857)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345566678888888887 6555 899999999999999999999999999999999999999999999999999
Q ss_pred hHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHH
Q 009967 99 MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYT 178 (521)
Q Consensus 99 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 178 (521)
|...|+.||..||+.++++|...++++.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|..+|..+|+
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776666666
Q ss_pred HHHHHHH----------------------------------------------------------------------cCC
Q 009967 179 TMICGLL----------------------------------------------------------------------KRE 188 (521)
Q Consensus 179 ~li~~~~----------------------------------------------------------------------~~g 188 (521)
++|.+|+ +.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 6555554 455
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268 (521)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 268 (521)
++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 66666667777777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009967 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348 (521)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 348 (521)
.|..|+..++++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|..+|++|.. +++||..||..++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5899999999999
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 428 (521)
.+|++.|+++.+.+++..+. +.|+.++..++++|+++|++.|++++|.++|+.+ .||..+|+.++.+|.+.|+.++|
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHH
Confidence 99999999999999999996 8899999999999999999999999999999998 78999999999999999999999
Q ss_pred HHHHHHHHhc--CCCCchHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCccCCc
Q 009967 429 EFAARRILAL--DPEDVSSYVMLSNALSVAGKWDNVSNIRREMK-EKGMTRVPG 479 (521)
Q Consensus 429 ~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~ 479 (521)
+++|++|.+. .| |..+|..++.+|.+.|++++|.++|++|. +.|+.|+..
T Consensus 574 ~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 574 VELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred HHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 9999999884 35 78889999999999999999999999998 678887643
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-59 Score=487.81 Aligned_cols=453 Identities=11% Similarity=0.150 Sum_probs=364.8
Q ss_pred CCCCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 009967 24 APNYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97 (521)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (521)
..+...++.++++.|.+.|.+.++ ++..|.+.|.+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|+
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 356788888999999988844444 67778888888888888888888888888888888888888888888888
Q ss_pred HhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CC
Q 009967 98 RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN----PN 173 (521)
Q Consensus 98 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~ 173 (521)
+|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888854 88
Q ss_pred chhHHHHHHHHHcCCCHHHHHHHHhhCC------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 009967 174 VVSYTTMICGLLKRERFEDALKLFQEMP------HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAI 247 (521)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 247 (521)
..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI 621 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Confidence 8888888888888888888888888884 3788888888888888888888888888888888888888888888
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChH
Q 009967 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGE 323 (521)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~ 323 (521)
.+|++.|+++.|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ ||..+|+.+|.+|++.|+++
T Consensus 622 ~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888888888888888888888888888888888888864 77788888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
+|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. ..|+.||..+|+.++.+|++.|++++|.+++..|
T Consensus 702 eA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888885 6778888888888888888888888888888776
Q ss_pred C---CCCCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHHHhcC--C---------------
Q 009967 404 P---FDPGIGFWKALLGGCQI-----------------------HSNVELGEFAARRILALD--P--------------- 440 (521)
Q Consensus 404 ~---~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~~~--p--------------- 440 (521)
. ..||..+|+.++..|.. .+..+.|..+|++|++.+ |
T Consensus 781 ~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~ 860 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLP 860 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Confidence 3 57787788777755431 123456777777777633 3
Q ss_pred -------------------CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 009967 441 -------------------EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPG 479 (521)
Q Consensus 441 -------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (521)
++..+|+.++.++.+ ..++|..++++|.+.|+.|+..
T Consensus 861 ~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 861 HDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcc
Confidence 133445555555421 1246778888888888777653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-57 Score=473.63 Aligned_cols=427 Identities=16% Similarity=0.195 Sum_probs=398.9
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCc-----ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNV-----VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 122 (521)
++..|++.|++++|+++|+.|..++. ..++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc
Confidence 78888899999999999999986554 4556777889999999999999999974 99999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCchhHHHHHHHHHcCCCHHHHHHHHh
Q 009967 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN----PNVVSYTTMICGLLKRERFEDALKLFQ 198 (521)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~ 198 (521)
+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 899999999999999999999999999
Q ss_pred hCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 009967 199 EMPH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR--EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272 (521)
Q Consensus 199 ~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (521)
+|.+ ||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9964 8999999999999999999999999999986 578999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009967 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348 (521)
Q Consensus 273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 348 (521)
|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999984 899999999999999999999999999999999999999999999
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCH
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP---FDPGIGFWKALLGGCQIHSNV 425 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~ 425 (521)
.+|++.|++++|.++|++|. ..++.|+..+|+.|+.+|++.|++++|.++|++|. ..||..+|+.++.+|.+.|++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999996 77899999999999999999999999999999874 589999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCchHHHHHHHHHHh----c-------------------CChHHHHHHHHHHHhCCCccCCc
Q 009967 426 ELGEFAARRILALDP-EDVSSYVMLSNALSV----A-------------------GKWDNVSNIRREMKEKGMTRVPG 479 (521)
Q Consensus 426 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~~~~~ 479 (521)
++|.+++++|.+.+. ++..+|+.++..|.+ + +..++|..+|++|.+.|+.|+..
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence 999999999998542 277888888765432 1 23468999999999999999865
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-55 Score=453.30 Aligned_cols=447 Identities=19% Similarity=0.278 Sum_probs=406.0
Q ss_pred CCCCccchHHHHHHHhhcCCCchh------hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 009967 24 APNYLIETQKASVQKLETPAIRTD------SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFS 97 (521)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~g~~~~~------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (521)
..+......++|..+.+.| +.++ |+.+|++.|++++|.++|++|++||..+||.++.+|++.|++++|+++|+
T Consensus 135 ~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 135 ALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213 (697)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence 3456667789999999999 8888 99999999999999999999999999999999999999999999999999
Q ss_pred HhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhH
Q 009967 98 RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSY 177 (521)
Q Consensus 98 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 177 (521)
+|.+.|+.|+..+|+.++.+|...|+.+.+.+++..+.+.|+.||..+++.|+++|++.|++++|.++|++|..+|..+|
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~ 293 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAW 293 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh
Q 009967 178 TTMICGLLKRERFEDALKLFQEMP----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI 253 (521)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 253 (521)
+.++.+|++.|+.++|.++|++|. .||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 999999999999999999999995 4899999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHH
Q 009967 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFF 329 (521)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~ 329 (521)
|+++.|..+|+.|.+ ||..+||+++.+|++.|+.++|.++|++|.+ ||..||+.++.+|++.|..++|.++|
T Consensus 374 G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 374 GRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999864 6899999999999999999999999999974 99999999999999999999999999
Q ss_pred HHHHH-CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC
Q 009967 330 ERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP 407 (521)
Q Consensus 330 ~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 407 (521)
+.|.+ .|+.|+..+|+.++.++++.|++++|.++++++ +..|+..+|+.|+.+|...|+++.|..+++++. ..|
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 99986 699999999999999999999999999999766 577999999999999999999999999998853 455
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHH---HH--------HhcCChHHHHHHHHHHHhCC
Q 009967 408 -GIGFWKALLGGCQIHSNVELGEFAARRILALDPE--DVSSYVMLSN---AL--------SVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 408 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~---~~--------~~~g~~~~A~~~~~~m~~~g 473 (521)
+..+|..++..|.+.|++++|.+++++|.+.+-. ...+|..+.. .+ ....-++...++..+|.+.|
T Consensus 526 ~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 526 EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 4669999999999999999999999999986421 1111111100 00 00112455667888899999
Q ss_pred CccCCc
Q 009967 474 MTRVPG 479 (521)
Q Consensus 474 ~~~~~~ 479 (521)
..|+..
T Consensus 606 y~~~~~ 611 (697)
T PLN03081 606 YVAEEN 611 (697)
T ss_pred CCCCcc
Confidence 888754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.8e-29 Score=267.81 Aligned_cols=418 Identities=12% Similarity=0.052 Sum_probs=308.8
Q ss_pred hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
++..+.+.|++++|.++++.+.. .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 77778888888888888877652 355678888888888888888888888887654 34555666777777888888
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMP 201 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 201 (521)
++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++.. .+...+..++..+.+.|++++|..+++.+.
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888887764 55677777888888888888888888887754 344566777788888888888888888775
Q ss_pred C---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHH
Q 009967 202 H---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVG 278 (521)
Q Consensus 202 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 278 (521)
+ .+..+|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|+++.|..+++.+.+..+. +...+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 672 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQ 672 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 4 356778888888888888888888888877643 234556667777778888888888888887776543 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967 279 NSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355 (521)
Q Consensus 279 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 355 (521)
..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+++...+ |+..++..+..++...|
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC
Confidence 7777778888888888888877764 345567777777777888888888888777643 55566666777777778
Q ss_pred cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAAR 433 (521)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (521)
++++|.+.++++....+ .++..+..+...|...|++++|.+.|+++. .+++...+..++..+...|+ ++|+..++
T Consensus 751 ~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTHP--NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 88888777777764443 456677777777777788888877777743 23455567777777777777 66777777
Q ss_pred HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 434 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
++.+..|+++.++..++.++...|++++|..+++++.+.+.
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77777777777777777777777777777777777776554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-28 Score=265.90 Aligned_cols=440 Identities=10% Similarity=-0.008 Sum_probs=298.9
Q ss_pred CCCCccchHHHHHHHhhcCCCchh----hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHH
Q 009967 24 APNYLIETQKASVQKLETPAIRTD----SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLF 96 (521)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~g~~~~~----l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (521)
..+........+..+.+...-... +...+...|++++|.+.|+.... .+...+..++..+.+.|++++|..++
T Consensus 375 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 344445555555554442200111 66666777777777777766442 22345556667777777777777777
Q ss_pred HHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CC
Q 009967 97 SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PN 173 (521)
Q Consensus 97 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~ 173 (521)
+.+.... +++..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.. .+
T Consensus 455 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 532 (899)
T TIGR02917 455 KKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN 532 (899)
T ss_pred HHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc
Confidence 7776543 4556677777777777777777777777777643 44555666677777777777777777777654 34
Q ss_pred chhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 009967 174 VVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250 (521)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 250 (521)
..++..+...+.+.|+.++|...++++.+ .+...+..++..|...|++++|..+++.+.... +.+..++..+..++
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 55667777777777777777777777643 345566677777777777777777777776543 34556677777777
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 009967 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIE 327 (521)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 327 (521)
...|+++.|...++.+.+..+. +...+..+..++.+.|++++|..+|+++.+ .+..++..++..+...|++++|..
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777777766533 556666777777777777777777777654 345577777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--C
Q 009967 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--F 405 (521)
Q Consensus 328 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 405 (521)
+++.+.+.+ +++...+..+...+...|++++|...|+.+.... |+..++..++.++.+.|++++|.+.++++. .
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777777654 3455566666677777777777777777775332 444566667777777777777777776642 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+.+...+..+...|...|++++|...|+++++..|+++.++..++..+...|+ .+|+.+++++.+.
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 34555677777777777777777777777777777777777777777777777 6677777776654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.1e-20 Score=205.54 Aligned_cols=414 Identities=13% Similarity=0.068 Sum_probs=286.9
Q ss_pred hhhhcccCCChhHHHHHhccCCC--CCcccH-----------------HHHHHHHHhcCChHHHHHHHHHhHHCCCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD--LNVVSA-----------------TTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 108 (521)
++..+.+.|+.++|.+.++++.+ |+...+ ......+.+.|++++|+..|+.+.+.+ +|+.
T Consensus 68 ~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~ 146 (1157)
T PRK11447 68 RFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPEL 146 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCCh
Confidence 67777888888888888887653 332211 223345777888888888888887653 3333
Q ss_pred hh-HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-CCc-----h------
Q 009967 109 FT-FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNV-----V------ 175 (521)
Q Consensus 109 ~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~------ 175 (521)
.. ...+.......|+.++|++.++.+.+.. +.+...+..+...+...|+.++|+..++++.. +.. .
T Consensus 147 ~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 147 DLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred HHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 21 1111222234588888888888888764 55666777888888888888888888876532 100 0
Q ss_pred -----------hHH----------------------------------HHHHHHHcCCCHHHHHHHHhhCCC---CChhH
Q 009967 176 -----------SYT----------------------------------TMICGLLKRERFEDALKLFQEMPH---RNVVS 207 (521)
Q Consensus 176 -----------~~~----------------------------------~li~~~~~~g~~~~a~~~~~~~~~---~~~~~ 207 (521)
.+. .....+...|++++|+..|++..+ .+..+
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a 305 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEA 305 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 000 112345567888888888887764 36677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh---hH------------HHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 009967 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS---TL------------PCAIIAAANIAALGMGKSFHACAVKFLGK 272 (521)
Q Consensus 208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (521)
+..+..++.+.|++++|+..|++..+.. |+.. .+ ......+...|++++|...++.+.+..+.
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~ 383 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT 383 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888888888887743 3221 11 12234566778888888888888887654
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHH--------------------------------------
Q 009967 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-IVTWNA-------------------------------------- 311 (521)
Q Consensus 273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~-------------------------------------- 311 (521)
+...+..+..++...|++++|++.|+++.+ |+ ...+..
T Consensus 384 -~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 -DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 556677778888888888888888888764 22 222221
Q ss_pred ----HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH---
Q 009967 312 ----VICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM--- 383 (521)
Q Consensus 312 ----li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 383 (521)
+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...++++....+. ++..+..+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~ 538 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN--DPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 233455678899999999988874 354 456677788888999999999999988644442 22222222
Q ss_pred -----------------------------------------HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009967 384 -----------------------------------------VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422 (521)
Q Consensus 384 -----------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 422 (521)
...+...|+.++|..+++.- +++...+..+...+...
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHc
Confidence 33344555666666665532 33445667778888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
|++++|+..|+++++..|+++.++..++.+|...|++++|+..++...+.
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999987654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=4.8e-21 Score=208.29 Aligned_cols=415 Identities=11% Similarity=0.071 Sum_probs=326.6
Q ss_pred hhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC-ChhhHH------------
Q 009967 49 VSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-SEFTFG------------ 112 (521)
Q Consensus 49 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------ 112 (521)
...+...|++++|+..|++... | +...+..+...+.+.|++++|+..|++..+..... ....+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4556788999999999987642 3 66788899999999999999999999998754221 111111
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCC
Q 009967 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRER 189 (521)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 189 (521)
.....+...|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++.+ | +...+..+...+. .++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 12335678899999999999999864 45667788889999999999999999999876 3 3445666666664 567
Q ss_pred HHHHHHHHhhCCCCC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcch
Q 009967 190 FEDALKLFQEMPHRN------------VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAAL 256 (521)
Q Consensus 190 ~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 256 (521)
.++|+.+++.+.... ...+..+...+...|++++|++.|++..+.. |+ ...+..+...+...|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 899999998876421 2345567788899999999999999998854 54 45667788899999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----Ch---------hHHHHHHHHHHHcCChH
Q 009967 257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER----NI---------VTWNAVICGYAQNGRGE 323 (521)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~ 323 (521)
++|...++.+.+..+. +...+..+...+...++.++|...++.+... +. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 9999999999886554 5555555666778899999999999988642 11 12234566788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
+|..+++. .+++...+..+...+...|++++|...|+++....+ .++..+..++.+|...|++++|++.++.+
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P--~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP--GNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999882 244556777788889999999999999999986554 45678999999999999999999999986
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHhcCChHHHHHHHHHHHh-CCC
Q 009967 404 P-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV------SSYVMLSNALSVAGKWDNVSNIRREMKE-KGM 474 (521)
Q Consensus 404 ~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~ 474 (521)
. ..| +...+..+..++...|++++|.+++++++...|+++ .++..++..+...|++++|+..|++... .|+
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 4 344 455677788889999999999999999999876544 4677789999999999999999998853 344
Q ss_pred c
Q 009967 475 T 475 (521)
Q Consensus 475 ~ 475 (521)
.
T Consensus 744 ~ 744 (1157)
T PRK11447 744 T 744 (1157)
T ss_pred C
Confidence 3
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-22 Score=186.84 Aligned_cols=377 Identities=15% Similarity=0.162 Sum_probs=227.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHH-HHHHHHHH
Q 009967 75 SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFV-GSAILDLY 153 (521)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~ 153 (521)
+|+.+...+-..|++++|+..++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++. .|+... ...+.+..
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 45556666666666777777776666643 224556666666666666666666666666663 344332 23333444
Q ss_pred HcCCCHHHHHHHhhcCCC--CC-chhHHHHHHHHHcCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHH
Q 009967 154 IKLSSIEEATRVFEDTHN--PN-VVSYTTMICGLLKRERFEDALKLFQEMPHRN---VVSWNAMIGGYSQTGRNEEAVNL 227 (521)
Q Consensus 154 ~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 227 (521)
...|++.+|...+.+..+ |. ...|..|...+..+|++..|+..|++..+-| ..+|-.|...|...+.+++|...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 456666666666655554 32 3356666666666677777777666665522 34566666666666666666666
Q ss_pred HHHHHHCCCCCCh-hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 009967 228 FIEMLREGLVPNH-STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--- 303 (521)
Q Consensus 228 ~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 303 (521)
|...... .|+. ..+..+.-.|...|.++.|...+++.++..+. -...|+.|..++-..|++.+|.+.|++...
T Consensus 275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 6665552 3432 34445555566666666666666666665444 345566666666666666666666666654
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-hHHH
Q 009967 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYA 381 (521)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 381 (521)
....+.+.|...|...|.+++|..+|....+ +.|.- ...+.|...|-.+|++++|...|+++. .+.|+. ..|+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~ 426 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALS 426 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHH
Confidence 2234566666666666666666666666555 33442 355666666666666666666666655 333442 3566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 009967 382 CMVDLLSRSGRFKEAKEFLYDL-PFDPGI-GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459 (521)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 459 (521)
.+...|...|+.+.|.+.+.+. .+.|.. ..++.|...|...|+..+|++-|+.++.+.|+.|.+|..++.++.-..+|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 6666666666666666666653 234442 35666666666666666666666666666666666666666665555444
Q ss_pred HHH
Q 009967 460 DNV 462 (521)
Q Consensus 460 ~~A 462 (521)
.+-
T Consensus 507 ~D~ 509 (966)
T KOG4626|consen 507 TDY 509 (966)
T ss_pred cch
Confidence 443
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=8.1e-22 Score=183.07 Aligned_cols=418 Identities=11% Similarity=0.082 Sum_probs=344.9
Q ss_pred hhhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
|.+-.-+.|++++|++.-..+-. | +....-.+-..+.+..+.+....--....+. .+.-..+|+.+.+.+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchH
Confidence 77777889999999987765432 2 2222223334455555666554433333332 345678999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCch-hHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVV-SYTTMICGLLKRERFEDALKLFQEMP 201 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~ 201 (521)
+.|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+ |+.. ....+...+...|++++|...+.+..
T Consensus 133 ~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 133 QDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 99999999999854 44678899999999999999999999998887 4433 33445666777899999999998876
Q ss_pred C--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhH
Q 009967 202 H--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277 (521)
Q Consensus 202 ~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 277 (521)
+ | -..+|+.|...+-.+|+...|+..|++.... .|+- ..|..+-..|...+.++.|...+..+....+. ...+
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a 288 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVA 288 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhh
Confidence 5 3 2468999999999999999999999999884 4553 57888999999999999999999998877655 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTE--RN-IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNH 353 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 353 (521)
+..+...|...|.++.|+..|++..+ |+ +..|+.|..++-..|+..+|...+++.... .|+ ..+.+.|...+..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 88888899999999999999999986 44 368999999999999999999999998874 354 4588999999999
Q ss_pred hccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 009967 354 TGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELGEF 430 (521)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 430 (521)
.|.++.|..+|....+-. |. ....+.|...|..+|++++|+..+++ +.++|+.. +++.+...|...|+.+.|++
T Consensus 367 ~~~~e~A~~ly~~al~v~---p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVF---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHHhhC---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 999999999999886333 44 34689999999999999999999998 45678754 89999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (521)
.+.+++..+|.-..++..|+.+|..+|+..+|++-+++..+....
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999998765433
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.9e-20 Score=190.08 Aligned_cols=390 Identities=14% Similarity=0.050 Sum_probs=287.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc
Q 009967 76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155 (521)
Q Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (521)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|++++|+..++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33556678888999999999999886 45777888888888899999999999999988864 4456788888899999
Q ss_pred CCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC-----------------------------C
Q 009967 156 LSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPH-----------------------------R 203 (521)
Q Consensus 156 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----------------------------~ 203 (521)
.|++++|...|..+.. .+......++..+........+...++.-.. .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999887755432 1111111111111111111112222211110 0
Q ss_pred Ch---hHHHHHHHH---HHhcCChHHHHHHHHHHHHCC-CCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh
Q 009967 204 NV---VSWNAMIGG---YSQTGRNEEAVNLFIEMLREG-LVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275 (521)
Q Consensus 204 ~~---~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 275 (521)
+. ..+..+... ....+++++|.+.|+.....+ ..|+ ...+..+...+...|+++.|...++.+.+..+. ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 00 111111111 123467999999999998764 2343 345667777888999999999999999987544 46
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009967 276 FVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352 (521)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 352 (521)
..+..+..++...|++++|...|+++.+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 6788889999999999999999998865 456789999999999999999999999998853 234567778888899
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-H-------HHHHHHHHHHhcC
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPGI-G-------FWKALLGGCQIHS 423 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~g 423 (521)
..|++++|...|+++....+ .++..+..+..++...|++++|++.|++. ...|+. . .++.....+...|
T Consensus 445 ~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFP--EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999875543 45678999999999999999999999883 333331 1 1111222234469
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 424 NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 424 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
++++|.+++++++.++|++..++..++.++.+.|++++|+..|++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998754
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.6e-20 Score=182.45 Aligned_cols=273 Identities=13% Similarity=0.063 Sum_probs=183.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN---HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..+++.+.+... .+..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 344444444444444444444444443211111 12233444444444455555544444444321 24555666667
Q ss_pred HHHhcCCHHHHHHHHhhcCC--CC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967 284 FYAKCGSMEDSLLVFDKLTE--RN------IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355 (521)
Q Consensus 284 ~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 355 (521)
++.+.|++++|.+.++.+.+ |+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 77777777777777776653 11 1234566777888899999999999888743 233557777788888999
Q ss_pred cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALLGGCQIHSNVELGEFAARR 434 (521)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (521)
++++|.++++++....+ .....++..++.+|.+.|++++|...++++. ..|+...+..++..+...|++++|..++++
T Consensus 229 ~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 229 DYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred CHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998864332 1224567888899999999999999998853 467777778888889999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCCcceEE
Q 009967 435 ILALDPEDVSSYVMLSNALSV---AGKWDNVSNIRREMKEKGMTRVPGCSWI 483 (521)
Q Consensus 435 ~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (521)
+++..|+++ .+..+...+.. .|+.+++..++++|.++++.++|.+...
T Consensus 308 ~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~ 358 (389)
T PRK11788 308 QLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCR 358 (389)
T ss_pred HHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECC
Confidence 999999655 55555555543 5689999999999999999999985443
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=5.3e-19 Score=180.19 Aligned_cols=373 Identities=12% Similarity=0.046 Sum_probs=222.5
Q ss_pred cccCCChhHHHHHhccCCCC------CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967 52 GSESDKFSSVHQVFDEVPDL------NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125 (521)
Q Consensus 52 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 125 (521)
+.++.+++.---+|...++. +..-.-.++..+.++|++++|..+++...... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 34556666665555544421 22233345556666777777777777766653 223333444444555667777
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCC
Q 009967 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPHR 203 (521)
Q Consensus 126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 203 (521)
.|...++.+.+.. +.+...+..+...+...|++++|...++++.. |+
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~------------------------------ 142 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG------------------------------ 142 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------
Confidence 7777777776643 34455566666666666777766666666544 22
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
+...+..+..++...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+..
T Consensus 143 ~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 143 NSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD 220 (656)
T ss_pred cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 23344444444455555555555444443322 2221111111224444555555555554444432223333344456
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc
Q 009967 284 FYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEE----AIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356 (521)
Q Consensus 284 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 356 (521)
++.+.|++++|...|+++.+ .+...+..+...+...|++++ |...|++..... +.+...+..+...+...|+
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCC
Confidence 66677777777777777654 344566677777777887775 788888877642 2244577777778888888
Q ss_pred HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Q 009967 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGF-WKALLGGCQIHSNVELGEFAARR 434 (521)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~ 434 (521)
+++|...++++....+ .++..+..+..+|.+.|++++|...++++. ..|+... +..+..++...|+.++|+..|++
T Consensus 300 ~~eA~~~l~~al~l~P--~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 300 NEKAIPLLQQSLATHP--DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888765443 344566777888888888888888887753 3555433 33345667888888888888888
Q ss_pred HHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 435 ILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 435 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
+++..|++. ..++++|...+.+..+.-
T Consensus 378 al~~~P~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 378 YIQARASHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHhChhhc------------hhhHHHHHHHHHHHHHhc
Confidence 888888654 234456666666655543
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=3.1e-18 Score=178.33 Aligned_cols=393 Identities=10% Similarity=-0.002 Sum_probs=212.2
Q ss_pred hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
.++.....|+.++|++++.+... .+...+..+...+.+.|++++|..+|++..+.. +.+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 66777788888888888877553 233457888888888888999988888887753 34455666777778888888
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRERFEDALKLFQEMP 201 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 201 (521)
++|...++.+.+.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..+.|++.++...
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 88888888888763 44555 77788888888888888888888876 4 34455667777778888888888888776
Q ss_pred CCChh--------HHHHHHHHHHhc-----CCh---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHHhhcchHHH
Q 009967 202 HRNVV--------SWNAMIGGYSQT-----GRN---EEAVNLFIEMLRE-GLVPNHS-TLP----CAIIAAANIAALGMG 259 (521)
Q Consensus 202 ~~~~~--------~~~~l~~~~~~~-----~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~a 259 (521)
. ++. ....++...... +++ ++|++.++.+.+. ...|+.. .+. ..+.++...|+.+.|
T Consensus 178 ~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 178 L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 5 211 112222222111 123 5566666666643 1122211 110 002223344455555
Q ss_pred HHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967 260 KSFHACAVKFLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN-------IVTWNAVICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 260 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~ 331 (521)
...|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.+.+ ......+..++...|++++|..+++.
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5555555444321 111 11113344445555555555555443211 11233333344444555555555554
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-
Q 009967 332 MRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK---PEHYACMVDLLSRSGRFKEAKEFLYDLP-F- 405 (521)
Q Consensus 332 m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~- 405 (521)
+.... |... .+. .....|+ ...+..+...+...|++++|+++++++. .
T Consensus 336 ~~~~~--P~~~~~~~------------------------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 336 TINNS--PPFLRLYG------------------------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred HhhcC--CceEeecC------------------------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44321 1000 000 0000011 1123334444555555555555555432 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
+.+...+..++..+...|++++|++.++++++..|+++..+...+..+.+.|++++|..+++++.+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 223334444445555555555555555555555555555555555555555555555555555443
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1e-19 Score=176.81 Aligned_cols=283 Identities=11% Similarity=0.012 Sum_probs=139.9
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCc---HHHHHHHHHHHHcCCC
Q 009967 82 RFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN---VFVGSAILDLYIKLSS 158 (521)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 158 (521)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666643 23344556666666666666666666666665331111 2345555666666666
Q ss_pred HHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCC--------hhHHHHHHHHHHhcCChHHHHHH
Q 009967 159 IEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPHRN--------VVSWNAMIGGYSQTGRNEEAVNL 227 (521)
Q Consensus 159 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~ 227 (521)
+++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666544 233345555555555555555555555543310 11233444555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC
Q 009967 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN 305 (521)
Q Consensus 228 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 305 (521)
|+++.+.. +.+...+..+...+...|++++|..+++.+.+.++.....+++.++.+|.+.|++++|...++++.+ |+
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 55555432 1112233344444444555555555555444433222233344444555555555555555554432 33
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---hccHHHHHHHHHHch
Q 009967 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH---TGLVEKGYSYFSQAK 368 (521)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~ 368 (521)
...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 334444445555555555555555544442 3444444444443332 234444555554443
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=2.2e-18 Score=175.66 Aligned_cols=314 Identities=11% Similarity=-0.014 Sum_probs=199.7
Q ss_pred hhhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
++..+.+.|++++|..+++.+.. | +...+..++.+....|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 67788899999999999987642 2 44566667777888999999999999999864 44566778888889999999
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC
Q 009967 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPH 202 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 202 (521)
++|...++.+.+.. +.+...+..+..++...|++++|...++.+.. |+.......+..+.+.|++++|+..++.+.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999864 55677888899999999999999999987643 4333222222346777888888887777654
Q ss_pred C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchHH----HHHHHHHHHHcCCCC
Q 009967 203 R----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAALGM----GKSFHACAVKFLGKL 273 (521)
Q Consensus 203 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~ 273 (521)
. +...+..+..++...|++++|+..++++...+ |+ ...+..+...+...|+++. |...++.+.+..+.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~- 282 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD- 282 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence 2 22334445567777788888888777777643 33 3334444455555555543 45555555544333
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT-LLGLLW 349 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~ 349 (521)
+..++..+...+.+.|++++|...+++..+ | +...+..+..++.+.|++++|...++++... .|+... +..+..
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~ 360 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA 360 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 444455555555555555555555554442 2 2233444445555555555555555554442 233221 222233
Q ss_pred HHHhhccHHHHHHHHHHch
Q 009967 350 ACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~ 368 (521)
++...|+.++|...|+++.
T Consensus 361 al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555544
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4e-18 Score=174.32 Aligned_cols=391 Identities=10% Similarity=0.002 Sum_probs=287.6
Q ss_pred hhhhcccCCChhHHHHHhccCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 125 (521)
....+.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|+++
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 4467788999999999998854 4677889999999999999999999999998864 345668888999999999999
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C---------------------------Cc--
Q 009967 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--P---------------------------NV-- 174 (521)
Q Consensus 126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---------------------------~~-- 174 (521)
+|+..+..+...+-..+.. ...++..+........+...++.-.. + +.
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9998887665543111111 11111111111111222222211111 0 00
Q ss_pred -hhHHHHHHHH---HcCCCHHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhH
Q 009967 175 -VSYTTMICGL---LKRERFEDALKLFQEMPH------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTL 243 (521)
Q Consensus 175 -~~~~~li~~~---~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~ 243 (521)
..+..+...+ ...+++++|.+.|+...+ .....|+.+...+...|++++|+..|++..... |+ ...|
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~ 368 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSY 368 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHH
Confidence 0111111111 234688999999998764 234678888999999999999999999998853 55 4577
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcC
Q 009967 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R-NIVTWNAVICGYAQNG 320 (521)
Q Consensus 244 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~ 320 (521)
..+...+...|+++.|...++.+.+..+. +..++..+..++...|++++|...|++..+ | +...+..+...+.+.|
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 78888899999999999999999887654 678899999999999999999999999875 3 4567888889999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh--h---HHHHHHHHHHhcCCHHH
Q 009967 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--E---HYACMVDLLSRSGRFKE 395 (521)
Q Consensus 321 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~---~~~~l~~~~~~~g~~~~ 395 (521)
++++|+..|++..... +.+...+..+..++...|++++|...|++.....+-.... . .++.....+...|++++
T Consensus 448 ~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 448 SIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999988742 3346688888999999999999999999987443311111 1 12222333445799999
Q ss_pred HHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967 396 AKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444 (521)
Q Consensus 396 A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 444 (521)
|.+++++. ...|+ ...+..+...+...|++++|+..|+++.++.+....
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999883 44554 447888999999999999999999999998875433
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=3.6e-17 Score=170.66 Aligned_cols=212 Identities=11% Similarity=0.014 Sum_probs=151.4
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~ 331 (521)
++.+.|...+....... |+......+...+.+.|++++|...|+++.. ++...+..+...+.+.|++++|...+++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555555554443 2333333334445578888888888877654 4444566667777888888888888888
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-
Q 009967 332 MRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG- 408 (521)
Q Consensus 332 m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~- 408 (521)
..+.. |+.. .+..+.......|++++|...+++..... |+...+..+..++.+.|++++|...+++. ...|+
T Consensus 568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 87653 4333 33333334445588888888888887443 56777888888888899999999888874 33454
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|+..+++..+.
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5577777778888899999999999999999988889999999999999999999988887654
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=3.2e-16 Score=160.34 Aligned_cols=433 Identities=11% Similarity=0.019 Sum_probs=298.1
Q ss_pred CCccchHHHHHHHhhcCCCchhhhhhcccCCChhHHHHHhccCCC--CCcc-cHHHHHHHHHhcCChHHHHHHHHHhHHC
Q 009967 26 NYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPD--LNVV-SATTIIGRFAKQHHYEEAIYLFSRMLLL 102 (521)
Q Consensus 26 ~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 102 (521)
..+...+..+...+..- +.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++....
T Consensus 29 ~~p~~~~~~y~~aii~~-----------r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p 97 (822)
T PRK14574 29 VNPAMADTQYDSLIIRA-----------RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS 97 (822)
T ss_pred cCccchhHHHHHHHHHH-----------hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC
Confidence 34444555555555443 89999999999988764 4321 2237788888889999999999998721
Q ss_pred CCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCchhHHHH
Q 009967 103 NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVVSYTTM 180 (521)
Q Consensus 103 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l 180 (521)
.+.+......+...+...|++++|.++|+.+.+.. +.+...+..++..+...++.++|++.++++.. |+...+..+
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l 175 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL 175 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH
Confidence 12223333333557788899999999999999865 44567777888899999999999999999987 554445444
Q ss_pred HHHHHcCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH------HHHHHHH-
Q 009967 181 ICGLLKRERFEDALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL------PCAIIAA- 250 (521)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------~~ll~~~- 250 (521)
+..+...++..+|++.++++.+ | +...+..+..+..+.|-...|.++.++-... +.+..... ...++-.
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcc
Confidence 4444446666669999998875 3 5677788888889999888888776542211 11111000 0011000
Q ss_pred ----Hhhc---chHHHHHHHHHHHHc-CCCCCh-hH----HHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHH
Q 009967 251 ----ANIA---ALGMGKSFHACAVKF-LGKLDV-FV----GNSLISFYAKCGSMEDSLLVFDKLTER----NIVTWNAVI 313 (521)
Q Consensus 251 ----~~~~---~~~~a~~~~~~~~~~-~~~~~~-~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li 313 (521)
.... -.+.+..-++.+... +..|.. .. ..-.+-++...|+..++++.|+.+..+ ...+-..+.
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0111 233444444444442 222321 11 123345677888999999999999842 234566778
Q ss_pred HHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC----------CCChh
Q 009967 314 CGYAQNGRGEEAIEFFERMRING-----IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG----------MLKPE 378 (521)
Q Consensus 314 ~~~~~~~~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~ 378 (521)
.+|...+++++|..+++.+.... ..++......|.-++...+++++|..+++.+....+. .|++.
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 88999999999999999886632 1223334567888889999999999999998643331 23332
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967 379 ---HYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453 (521)
Q Consensus 379 ---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 453 (521)
.+..++..+...|++.+|++.++++. .+-|......+...+...|++.+|++.++.+..++|++..+....+.++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 34556777888999999999998863 2456778888888899999999999999888889999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009967 454 SVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~ 472 (521)
...|++.+|..+.+++.+.
T Consensus 495 l~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 495 MALQEWHQMELLTDDVISR 513 (822)
T ss_pred HhhhhHHHHHHHHHHHHhh
Confidence 9999999998888766443
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=1.2e-15 Score=159.41 Aligned_cols=407 Identities=9% Similarity=-0.017 Sum_probs=291.1
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHH--HHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGR--FAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 125 (521)
++..+.+.|+++.|+++.+. ...+. . ..++. ....+...++...+..|.+.. +-+......+--...+.|+.+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~ 393 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLAT-LPANE-M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSR 393 (987)
T ss_pred HHHHHHhccHHHHHHHHhcC-CCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHH
Confidence 47888888888877777542 22222 1 22222 223466777777777777652 335555555555567778888
Q ss_pred HHHHHHHHHHHh-C-CCCcHHHHHHHHHHHHcCCCH---HHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhC
Q 009967 126 LGKQLHAWATKV-G-LQSNVFVGSAILDLYIKLSSI---EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200 (521)
Q Consensus 126 ~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 200 (521)
+|.++++..... + -..+....+.++..|.+.+.. .++..+-..+..+....| ...+ -....+...+...
T Consensus 394 ~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~a 467 (987)
T PRK09782 394 EAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW---QSQL---PGIADNCPAIVRL 467 (987)
T ss_pred HHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH---Hhhh---hhhhhhHHHHHHh
Confidence 888888877662 1 223455566788888888773 344333333333322111 1111 1112222223222
Q ss_pred CC---C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh
Q 009967 201 PH---R--NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275 (521)
Q Consensus 201 ~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 275 (521)
.. + +...|..+..++.. +++++|...+.+..... |+......+...+...|+++.|...++.+.... |+.
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~ 542 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSN 542 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCc
Confidence 22 3 66788888888877 88999999888877643 766555555666678999999999999876553 334
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009967 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNA---VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352 (521)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 352 (521)
..+..+..++.+.|+.++|.+.|++..+.++...+. +.......|++++|...+++..+. .|+...+..+..++.
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~ 620 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 456677888899999999999999988644333333 333344559999999999999874 478888999999999
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEF 430 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 430 (521)
+.|++++|...++++....+ .++..+..+..++...|++++|+..+++. ...| +...+..+..++...|++++|+.
T Consensus 621 ~lG~~deA~~~l~~AL~l~P--d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELEP--NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999985554 45668889999999999999999999984 3445 56688999999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
.|+++++..|++..+....++...+..+++.|.+.+++....++
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999888655444
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=2.3e-15 Score=154.15 Aligned_cols=426 Identities=11% Similarity=0.039 Sum_probs=312.7
Q ss_pred chhhccccCCCCccchHHHHHHHhhcCCCch----hhhhhcccCCChhHHHHHhccCCCCCccc-HHHH--HHHHHhcCC
Q 009967 16 KLSKLHSLAPNYLIETQKASVQKLETPAIRT----DSVSCGSESDKFSSVHQVFDEVPDLNVVS-ATTI--IGRFAKQHH 88 (521)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--~~~~~~~g~ 88 (521)
....+....-++...+........+..--.+ +++..+...|+.++|+..+++...|+... +..+ ...+...|+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 3333444444544444444444443320111 27888889999999999999987764443 3333 457778899
Q ss_pred hHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhc
Q 009967 89 YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168 (521)
Q Consensus 89 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 168 (521)
+++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999875 445666777778889999999999999999875 46666665555555556777679999999
Q ss_pred CCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChh------HHHHHHHHH---H--hcCC---hHHHHHHH
Q 009967 169 THN--P-NVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVV------SWNAMIGGY---S--QTGR---NEEAVNLF 228 (521)
Q Consensus 169 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~------~~~~l~~~~---~--~~~~---~~~a~~~~ 228 (521)
+.+ | +...+..+...+.+.|-...|.++..+-+. +... ....+++.- . ...+ .+.|+.-+
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 986 5 456778889999999999999999988764 1110 011111110 0 1112 34566666
Q ss_pred HHHHHC-CCCCChh-----hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009967 229 IEMLRE-GLVPNHS-----TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302 (521)
Q Consensus 229 ~~m~~~-~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 302 (521)
+.+... +-.|... ...-.+-++...|+...+...++.+...+.+....+-.++.++|...+++++|..+|..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 666652 2224322 2234567888999999999999999999987777889999999999999999999999985
Q ss_pred CC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC--HH-HHHHHHHHHHhhccHHH
Q 009967 303 ER---------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGI-----------RPN--GV-TLLGLLWACNHTGLVEK 359 (521)
Q Consensus 303 ~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~--~~-~~~~ll~~~~~~~~~~~ 359 (521)
.. +......|.-+|...+++++|..+++++.+... .|| -. .+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 42 223357788899999999999999999987311 122 22 33445666889999999
Q ss_pred HHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
|++.++++....| -|......+.+.+...|.+.+|++.++... ..|+ ..+....+.++...+++++|..+.+.+.+
T Consensus 435 Ae~~le~l~~~aP--~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 435 AQKKLEDLSSTAP--ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999976665 567788899999999999999999997743 3554 55777888888999999999999999999
Q ss_pred cCCCCchHH
Q 009967 438 LDPEDVSSY 446 (521)
Q Consensus 438 ~~p~~~~~~ 446 (521)
..|+++.+-
T Consensus 513 ~~Pe~~~~~ 521 (822)
T PRK14574 513 RSPEDIPSQ 521 (822)
T ss_pred hCCCchhHH
Confidence 999888553
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=6.5e-16 Score=161.04 Aligned_cols=360 Identities=12% Similarity=0.058 Sum_probs=235.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCC
Q 009967 78 TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157 (521)
Q Consensus 78 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 157 (521)
-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. +.+...+..++.++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34556667788888888888877522 3445567777777888888888888888877753 445666677777888888
Q ss_pred CHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 158 SIEEATRVFEDTHN--P-NVVSYTTMICGLLKRERFEDALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEM 231 (521)
Q Consensus 158 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 231 (521)
++++|...++++.+ | +.. +..+...+...|+.++|+..++++.+ | +...+..+..++...+..+.|++.++..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 88888888887765 3 334 66677777777777877777777665 2 4455566666777777777777777655
Q ss_pred HHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHH-----HhcCCH---HHHHHHHhhcCC
Q 009967 232 LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY-----AKCGSM---EDSLLVFDKLTE 303 (521)
Q Consensus 232 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~---~~A~~~~~~~~~ 303 (521)
.. .|+.... + . ......++... ...+++ ++|.+.++.+.+
T Consensus 177 ~~---~p~~~~~---l-------~-------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 177 NL---TPAEKRD---L-------E-------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred CC---CHHHHHH---H-------H-------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 43 2321000 0 0 00001111111 111222 556666665552
Q ss_pred -----CChh-HH----HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967 304 -----RNIV-TW----NAVICGYAQNGRGEEAIEFFERMRINGIR-PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372 (521)
Q Consensus 304 -----~~~~-~~----~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 372 (521)
|+.. .+ ...+..+...|++++|+..|+.+.+.+-+ |+. ....+..++...|++++|...|+++....+
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 2111 11 11123345667888888888887775422 322 222245567788888888888887753333
Q ss_pred CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-C-------------CC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967 373 GML--KPEHYACMVDLLSRSGRFKEAKEFLYDLPF-D-------------PG---IGFWKALLGGCQIHSNVELGEFAAR 433 (521)
Q Consensus 373 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-------------~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (521)
..+ .......+..++.+.|++++|.++++.+.. . |+ ...+..+...+...|+.++|++.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 221 123455666677788888888888776531 1 23 2245566777889999999999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 434 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
++....|.++..+..++..+...|++++|++.+++..+..
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999987643
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.6e-16 Score=152.60 Aligned_cols=464 Identities=14% Similarity=0.094 Sum_probs=266.3
Q ss_pred ccccccCCCcccchhhcccc-CCCCccchHHHHHHHhhcCCCchh----------hhhhcccCCChhHHHHHhccC---C
Q 009967 4 LLCICRSSLSLNKLSKLHSL-APNYLIETQKASVQKLETPAIRTD----------SVSCGSESDKFSSVHQVFDEV---P 69 (521)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~----------l~~~~~~~g~~~~A~~~~~~~---~ 69 (521)
+|.++|..++.++..+-|++ -++..+.+...+..... +.|. +--.+-....+..++.++... .
T Consensus 190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq---Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n 266 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ---LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN 266 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh---cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc
Confidence 35566666666666666666 34555555555555554 2233 111111223344444444332 2
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCC--CCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHH
Q 009967 70 DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNI--RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147 (521)
Q Consensus 70 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 147 (521)
..|+...+.|...|.-.|+++.++.+...+..... ..-...|-.+.+++-..|++++|..+|.+..+..-..-...+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 34566667777777777777777777777765321 1223346667777777777777777777766643111133344
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCC----CHHHHHHHHhhCCCC---ChhHHHHHHHHHHh
Q 009967 148 AILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRE----RFEDALKLFQEMPHR---NVVSWNAMIGGYSQ 217 (521)
Q Consensus 148 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 217 (521)
.+...|.+.|+++.+...|+.+.+ | +..+...|...|+..+ ..+.|..++.+...+ |...|-.+...+..
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 566777777777777777777655 3 3445555566665554 345555555555442 34445555444444
Q ss_pred cCChHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc---CCCCCh------hHHHHHHHH
Q 009967 218 TGRNEEAVNLFIEM----LREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF---LGKLDV------FVGNSLISF 284 (521)
Q Consensus 218 ~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~ 284 (521)
..-+.. +..|... ...+-.+.+...+.+.......|++..|...+..+... ...++. .+-..+..+
T Consensus 427 ~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 333222 4444332 23333455556666666666666666666666655543 111111 112223333
Q ss_pred HHhcCCHHHHHHHHhhcCC-------------------------------------CChhHHHHHHHHHHHcCChHHHHH
Q 009967 285 YAKCGSMEDSLLVFDKLTE-------------------------------------RNIVTWNAVICGYAQNGRGEEAIE 327 (521)
Q Consensus 285 ~~~~g~~~~A~~~~~~~~~-------------------------------------~~~~~~~~li~~~~~~~~~~~A~~ 327 (521)
.-..++.+.|.+.|..+.+ .++..+..+...+.....+..|.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 3444444445444444443 233334444444444444444444
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHh------------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967 328 FFERMRIN-GIRPNGVTLLGLLWACNH------------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394 (521)
Q Consensus 328 ~~~~m~~~-~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (521)
-|....+. ...+|..+...|...|.. .+..++|.++|.++...++ -|...-+.+.-+++..|++.
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp--kN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP--KNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc--chhhhccchhhhhhhccCch
Confidence 44333321 112455555556665432 2345778888887764443 45556677888888888999
Q ss_pred HHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 395 EAKEFLYDLPF--DPGIGFWKALLGGCQIHSNVELGEFAARRILALD--PEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 395 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+|..+|.++.. .....+|-.+..+|...|++..|++.|+...... .+++.+...|++++.+.|++.+|.+.+....
T Consensus 664 ~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 664 EARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99998888652 3345678888888888999999999998888743 3477888889999999999988888887765
Q ss_pred hCC
Q 009967 471 EKG 473 (521)
Q Consensus 471 ~~g 473 (521)
...
T Consensus 744 ~~~ 746 (1018)
T KOG2002|consen 744 HLA 746 (1018)
T ss_pred HhC
Confidence 543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.4e-16 Score=151.64 Aligned_cols=399 Identities=12% Similarity=0.044 Sum_probs=242.6
Q ss_pred hhhhcccCCChhHHHHHhccCCC--CC--cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC-
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD--LN--VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE- 122 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 122 (521)
+.++|-..|++++|...|-.-.. ++ +..+--+.+.+.+.|+++.+...|+...+.. +-+..+...+...|+..+
T Consensus 313 ~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 313 LGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhh
Confidence 55555555666666555543221 22 2223344555555566666666655555532 223333333333343332
Q ss_pred ---ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCC--------CCCchhHHHHHHHHHcCCCHH
Q 009967 123 ---DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH--------NPNVVSYTTMICGLLKRERFE 191 (521)
Q Consensus 123 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~ 191 (521)
..+.|..++...++.- +.|...|-.+...+....- -.+..+|.... ...+...|.+...+...|+++
T Consensus 392 ~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 2233444444333322 3344445444444433222 22233332221 134445555666666666666
Q ss_pred HHHHHHhhCCC-------CCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHhhcchH
Q 009967 192 DALKLFQEMPH-------RNV------VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLP-CAIIAAANIAALG 257 (521)
Q Consensus 192 ~a~~~~~~~~~-------~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~ 257 (521)
.|...|+.... ++. .+-..+....-..++++.|.+.|....... |+-.... -+.-.....+...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcH
Confidence 66666655432 111 122334455555566666666666666532 4433222 1111112234566
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHH------------cC
Q 009967 258 MGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNIVTWNAVICGYAQ------------NG 320 (521)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~------------~~ 320 (521)
.|...+.......-. ++..+..+...|.+..+|..|.+-|..+.+ +|+.+.-+|...|.+ .+
T Consensus 548 ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 666666666654432 556666677788888888888886666653 455555556665542 34
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 009967 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400 (521)
Q Consensus 321 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (521)
..++|+++|.+..... +-|...-+.+.-+++..|++..|..+|.++++... ....+|-.+..+|..+|++..|+++|
T Consensus 627 ~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 5788999999888754 44777888888889999999999999999974443 34556899999999999999999999
Q ss_pred hhC-C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 401 YDL-P---FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 401 ~~~-~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
+.. . .+.+....+.|..++...|.+.+|.+.+..+....|.++.+...++....+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 873 1 256777899999999999999999999999999999999887777766544
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.9e-15 Score=136.13 Aligned_cols=203 Identities=15% Similarity=0.092 Sum_probs=163.6
Q ss_pred hhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 009967 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEF 328 (521)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~ 328 (521)
..|+++.|...+.+.+..........|| +.-.+-..|++++|++.|-++.. .+..+...+...|-...+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4578888888888888764443333333 23346678999999999988764 6777888888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC
Q 009967 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP 407 (521)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 407 (521)
+.+.... ++.|...+..|...|-+.|+-.+|.+.+-.- -.-++-+..+...|...|....-+++++.+|++.. ..|
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds--yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS--YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc--ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 9877653 4456678888999999999999999876543 22344677888889999999999999999999854 489
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 408 GIGFWKALLGGCQ-IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 408 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
+..-|..++..|. +.|++++|.++|+...+..|.+...+..|++.+...|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999988865 56999999999999999999999999999999888775
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.9e-14 Score=129.77 Aligned_cols=390 Identities=12% Similarity=0.097 Sum_probs=245.1
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHH-HHHHHcCCCChHHHHHHHHHHHHhCCCCc----HHHHHHHHHHHH
Q 009967 80 IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS-VIPSSTALEDLNLGKQLHAWATKVGLQSN----VFVGSAILDLYI 154 (521)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 154 (521)
.+-|..+..+.+|+..|+-+.+..+-|+...... +-+.+.+.+++.+|+++|...+..-...+ ..+.+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3445556677888888888877777777655432 33446677777888888877766421122 233444455667
Q ss_pred cCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC----------------CChhHHHH-----H
Q 009967 155 KLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPH----------------RNVVSWNA-----M 211 (521)
Q Consensus 155 ~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~-----l 211 (521)
+.|.++.|+..|+...+ |+..+-..|+-++.--|+.++..+.|.+|.. |+....+. .
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 77888888888877665 6666555555566667777777777776642 11111111 1
Q ss_pred HHHHHhcCC--hHHHHHHHHHHHHCCCCCChhh-HHHH--------------------HHHHHhhcchHHHHHHHHHHHH
Q 009967 212 IGGYSQTGR--NEEAVNLFIEMLREGLVPNHST-LPCA--------------------IIAAANIAALGMGKSFHACAVK 268 (521)
Q Consensus 212 ~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~-~~~l--------------------l~~~~~~~~~~~a~~~~~~~~~ 268 (521)
+.-..+.+. .++++-.-.++...-+.|+... +... ...+.+.|+++.|.+++.-+.+
T Consensus 368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~ 447 (840)
T KOG2003|consen 368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK 447 (840)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence 111111111 1111111111111112222100 0000 0123345555555555554443
Q ss_pred cCCCCC------------------------------------hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH
Q 009967 269 FLGKLD------------------------------------VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAV 312 (521)
Q Consensus 269 ~~~~~~------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 312 (521)
...+.- ......-.+.....|++++|.+.|++....|...-..|
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 322211 11111111222346889999999999988777654444
Q ss_pred H---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967 313 I---CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389 (521)
Q Consensus 313 i---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (521)
. -.+-..|+.++|+..|-++..- +..+...+..+...|....+..+|.+++.++. .-++.++.+...|.+.|-+
T Consensus 528 fniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 528 FNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhc
Confidence 3 3466789999999999887652 23466677888888999999999999998874 3344678899999999999
Q ss_pred cCCHHHHHHHHhh-CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967 390 SGRFKEAKEFLYD-LP-FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 390 ~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (521)
.|+-..|.+..-+ .. ++-+..+..-|..-|....-++.++.+|+++.-+.|+....-..++.++.+.|++..|.++++
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999987644 34 355677777777778888889999999999999999544444556777889999999999999
Q ss_pred HHHhC
Q 009967 468 EMKEK 472 (521)
Q Consensus 468 ~m~~~ 472 (521)
+..++
T Consensus 685 ~~hrk 689 (840)
T KOG2003|consen 685 DIHRK 689 (840)
T ss_pred HHHHh
Confidence 97654
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1e-12 Score=124.03 Aligned_cols=455 Identities=12% Similarity=0.037 Sum_probs=274.0
Q ss_pred CCCCccchHHHHHHHhhcCCCchhhhhhcccCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChHHHHHHHHHhH
Q 009967 24 APNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVP---DLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100 (521)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 100 (521)
....+.+++-+....++.---+.+|.-+|++...++.|..++.+.. ..+...|-+-...--.+|+.+...++.++-.
T Consensus 388 elE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred hccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3455666776666666642123338889999999999999987654 4577888887777788999998888877643
Q ss_pred ----HCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C
Q 009967 101 ----LLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS--NVFVGSAILDLYIKLSSIEEATRVFEDTHN--P 172 (521)
Q Consensus 101 ----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~ 172 (521)
..|+..+...|..=...|-..|..-.+..+....+..|+.. ...||+.-...|.+.+.++-|..+|....+ |
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 46888888888887788888888888888888888777543 356777777888888888888888777665 2
Q ss_pred -CchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009967 173 -NVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248 (521)
Q Consensus 173 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 248 (521)
+...|......--..|..+....+|++... .....|......+...|+...|..++....+.. +-+...+...+.
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavK 626 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVK 626 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 233444444443444555555555554432 122333334444444455555555554444432 113334444444
Q ss_pred HHHhhcchHHHHHHHHHH---------------------------------HHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967 249 AAANIAALGMGKSFHACA---------------------------------VKFLGKLDVFVGNSLISFYAKCGSMEDSL 295 (521)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~---------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 295 (521)
.-.....++.|..+|... ++.-+. -...|-.+.+.+-+.++++.|.
T Consensus 627 le~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred HhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHH
Confidence 444444455555554444 443221 2233444444444444444444
Q ss_pred HHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967 296 LVFDKLTE--RN-IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372 (521)
Q Consensus 296 ~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 372 (521)
..|..-.+ |+ +..|-.+...--+.|..-.|..++++..-.+ +-+...|...|+.-.+.|+.+.|..++.++.++++
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444333 22 2234444444444444455555554444332 22333444444444455555555554444443332
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 373 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
.+...|..-|.+..+.++-......+++- +-|+...-.+...+....+++.|.+-|.+++..+|++..+|..+-..
T Consensus 785 --~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 785 --SSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred --ccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 23334444444444444433333333333 34555556666777888899999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCccCCcceEEEECC
Q 009967 453 LSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKS 487 (521)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~ 487 (521)
+.+.|.-++-.++++..... .|..|..|.-+..
T Consensus 861 el~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 99999999999999887654 5677777775544
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=8.4e-17 Score=148.10 Aligned_cols=258 Identities=19% Similarity=0.160 Sum_probs=112.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 009967 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL-PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288 (521)
Q Consensus 210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (521)
.+...+.+.|++++|+++++.......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3355666667777777776544333212333333 33444555566677777777776665544 56667777777 688
Q ss_pred CCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 009967 289 GSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERMRING-IRPNGVTLLGLLWACNHTGLVEKGYSYFS 365 (521)
Q Consensus 289 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 365 (521)
+++++|.+++...-+ +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998887654 566778888899999999999999999977632 34566678888888999999999999999
Q ss_pred HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 443 (521)
++....| .++.....++..+...|+.+++.+++.... .+.+...|..+..++...|+.++|+..|+++....|+|+
T Consensus 171 ~al~~~P--~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALELDP--DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH-T--T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHcCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9986664 357788899999999999999888877643 134556788899999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 444 SSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
.+...++.++...|+.++|.++.++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=2.6e-12 Score=121.28 Aligned_cols=424 Identities=11% Similarity=0.035 Sum_probs=342.2
Q ss_pred hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
|-.+-....+.++|+-++.+..+ .+...|. +|++-.-|+.|..++++..+. ++.+...|.+....--..|+.
T Consensus 382 LWKaAVelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 382 LWKAAVELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHHHHhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCH
Confidence 66677777778888888877553 2334444 455666789999999999875 778888888777777788999
Q ss_pred HHHHHHHHHH----HHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC------CCchhHHHHHHHHHcCCCHHHHH
Q 009967 125 NLGKQLHAWA----TKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN------PNVVSYTTMICGLLKRERFEDAL 194 (521)
Q Consensus 125 ~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~ 194 (521)
+.+.++...- ...|+..+..-|-.=...|-..|..--+..+...... .--.+|..-...|.+.+.++-|.
T Consensus 457 ~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 9988887764 4468888888888888888888888888777776654 23457888889999999999999
Q ss_pred HHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 009967 195 KLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG 271 (521)
Q Consensus 195 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 271 (521)
.+|....+ .+...|...+..--..|..+....+|++.... ++-....+..........|++..|..++..+.+..+
T Consensus 537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 99998876 35567888777778889999999999999885 344455566667778889999999999999999887
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 009967 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLL 348 (521)
Q Consensus 272 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll 348 (521)
. +..++-+.+.....+.+++.|..+|.+... ++...|..-+...--.++.++|.+++++..+. .|+-. .|..+.
T Consensus 616 n-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 616 N-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLG 692 (913)
T ss_pred C-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHh
Confidence 7 888999999999999999999999999875 77788888888888889999999999998874 46654 788888
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL--PFDPGIGFWKALLGGCQIHSNVE 426 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 426 (521)
..+.+.++++.|...|..-....+ -.+..|-.|.+.--+.|.+-+|..++++. +.+.+...|-..+..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP--~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCP--NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCC--CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 899999999999999987654443 44557888888889999999999999985 43556779999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------------------------CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 009967 427 LGEFAARRILALDPE------------------------------DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476 (521)
Q Consensus 427 ~A~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (521)
.|..+..++++--|. |+.++..++..+....+++.|++.|.+.++.+.+.
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 999999888764432 56778888999999999999999999988765444
Q ss_pred CCcceE
Q 009967 477 VPGCSW 482 (521)
Q Consensus 477 ~~~~~~ 482 (521)
-..+.|
T Consensus 851 GD~wa~ 856 (913)
T KOG0495|consen 851 GDAWAW 856 (913)
T ss_pred chHHHH
Confidence 333333
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.8e-12 Score=117.90 Aligned_cols=419 Identities=9% Similarity=0.040 Sum_probs=315.6
Q ss_pred cCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHH
Q 009967 54 ESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130 (521)
Q Consensus 54 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 130 (521)
.++++..|+.+|++... .+...|--.+..-.++..+..|..+|++....=...|..-| -.+..=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHHHHH
Confidence 45777889999987653 56778888899999999999999999999874322333333 333333467999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC------
Q 009967 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPH------ 202 (521)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------ 202 (521)
|+.-.+ ..|+...|++.++.-.+.+.++.|..++++..- |++.+|.-...--.+.|....|..+|+...+
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 999887 689999999999999999999999999998764 9999999888888899999999999998765
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchHHHHHH--------HHHHHHcCCC
Q 009967 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN--HSTLPCAIIAAANIAALGMGKSF--------HACAVKFLGK 272 (521)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~ 272 (521)
.+...+.+....-.++..++.|.-+|+-.+.+ ++.+ ...|......=-+-|+....... ++..++.++
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np- 319 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP- 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-
Confidence 23455666667677788899999999988875 2222 33454555444556665544433 333344332
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh---hHHHHHHHH--------HHHcCChHHHHHHHHHHHHCCCCC
Q 009967 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNI---VTWNAVICG--------YAQNGRGEEAIEFFERMRINGIRP 339 (521)
Q Consensus 273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~--------~~~~~~~~~A~~~~~~m~~~~~~p 339 (521)
.|-.++--.++.-...|+.+...++|++... |.. ..|.-.|-. -....+.+.+.++++...+. ++-
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 3667777788888888999999999999874 222 122222211 13468999999999999883 444
Q ss_pred CHHHHHHHHHHH----HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 009967 340 NGVTLLGLLWAC----NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWK 413 (521)
Q Consensus 340 ~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 413 (521)
..+||..+--.| .++.++..|.+++..++ |.-|...+|...|..-.+.+.+|.+..++++. ...| +..+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 455766543333 57789999999999887 55689999999999999999999999999984 3445 566899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcce
Q 009967 414 ALLGGCQIHSNVELGEFAARRILALDPE--DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCS 481 (521)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 481 (521)
.....-...|+.+.|..+|+-+++...- ....|-..+..-...|.++.|..+++++.+...-....+|
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence 9988888999999999999998874322 2346777888888999999999999999887543333333
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=7.8e-13 Score=120.75 Aligned_cols=385 Identities=18% Similarity=0.107 Sum_probs=256.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC-hhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCc-HHHHHHHHHHH
Q 009967 76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS-EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN-VFVGSAILDLY 153 (521)
Q Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 153 (521)
+-....-|.++|++++|++.|.+.++. .|| +..|.....+|...|+++++.+--...++ +.|+ ...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHH
Confidence 334556678899999999999999884 577 77788888888999999999888877777 3454 44666667788
Q ss_pred HcCCCHHHHHHHhhcCC---CCCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CCh----------------------
Q 009967 154 IKLSSIEEATRVFEDTH---NPNVVSYTTMICGLLKRERFEDALKLFQEMPH---RNV---------------------- 205 (521)
Q Consensus 154 ~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~---------------------- 205 (521)
-..|++++|..-..-.. .-+..+...++.-..+.--...+.+-+..=.. |+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 88888887764221110 00000011111111111111122222221000 111
Q ss_pred -hHHHHHHHHHHh--cC---ChHHHHHHHHHHHHC-CCCCChh----hHHHHHHH-------HHhhcchHHHHHHHHHHH
Q 009967 206 -VSWNAMIGGYSQ--TG---RNEEAVNLFIEMLRE-GLVPNHS----TLPCAIIA-------AANIAALGMGKSFHACAV 267 (521)
Q Consensus 206 -~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~-~~~p~~~----~~~~ll~~-------~~~~~~~~~a~~~~~~~~ 267 (521)
.+...+..++.. .+ .+..|...+.+-... ...++.. -...+..+ +.-.|+.-.+..-++..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 122222222211 11 233343333332111 1112111 00122222 234577888888888888
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHH
Q 009967 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVT 343 (521)
Q Consensus 268 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~ 343 (521)
+....++ ..|--+..+|....+.++.++.|+...+ .|+.+|..-.+.+.-.+++++|..-|++.... .|+ ...
T Consensus 354 ~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYA 430 (606)
T ss_pred hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHH
Confidence 8876643 3366777889999999999999999875 56678888888889999999999999998874 454 456
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---------HHHHH
Q 009967 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG---------IGFWK 413 (521)
Q Consensus 344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---------~~~~~ 413 (521)
|..+.-+..+.+.++++...|++.+.+.+ ..+.+|+.....+...++++.|.+.|+.. .+.|+ +.+..
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP--~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFP--NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 66666667788999999999999977765 55678999999999999999999999873 33443 22333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
.++....+ +|+..|+.+++++++++|....+|..++..-.+.|+.++|+++|++-.
T Consensus 509 a~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 509 ALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333 899999999999999999999999999999999999999999999753
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=2.2e-12 Score=115.93 Aligned_cols=313 Identities=12% Similarity=0.110 Sum_probs=205.9
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHH--HcCCCChHHH-HHHHHHHHHhCCCCcHHHHHHH
Q 009967 73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS--STALEDLNLG-KQLHAWATKVGLQSNVFVGSAI 149 (521)
Q Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 149 (521)
+.+-|.++.. ..+|....+.-+|+.|.+.|++.+...-..+++. |....++.-+ ++.|-.|...| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4566666664 5568899999999999999988887776666654 3344444332 33444455444 3333344
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHH
Q 009967 150 LDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEEAV 225 (521)
Q Consensus 150 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~ 225 (521)
+.|++.+ ++-+....+..++..||.++++--..+.|.+++++... -+..+||.+|.+-.-..+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 4555444 33334444566788888888888888888888887764 366777777765433222 6
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHH----HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhh
Q 009967 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMG----KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED-SLLVFDK 300 (521)
Q Consensus 226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 300 (521)
+++.+|....+.||..||++++.+.++.|+++.+ .+++.+|.+.|++|...+|..++..+++-++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 7778888888888888888888888888876544 5677788888888888888888888888777644 4444444
Q ss_pred cCC------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhhccHHHHH
Q 009967 301 LTE------------RNIVTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRPNG---VTLLGLLWACNHTGLVEKGY 361 (521)
Q Consensus 301 ~~~------------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~---~~~~~ll~~~~~~~~~~~a~ 361 (521)
+.. .|...|...+..|....+.+-|.++-.-+... -+.|+. .-|..+....+.....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 331 23345666677777777777777766554331 122332 24556666667777777777
Q ss_pred HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
..|+.+. -.-.-|+..+...++++..-.|+++-.-+++.++
T Consensus 419 ~~Y~~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~ 459 (625)
T KOG4422|consen 419 KWYEDLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDS 459 (625)
T ss_pred HHHHHhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 7777775 4444466666667777777777776666666554
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=5.2e-13 Score=130.68 Aligned_cols=311 Identities=14% Similarity=0.125 Sum_probs=192.7
Q ss_pred CCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 157 SSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEM---PHRNVVSWNAMIGGYSQTGRNEEAVNLFIE 230 (521)
Q Consensus 157 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 230 (521)
|++++|.+++.+++. .+...|.+|...|-..|+.+++...+-.. ...|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 555555555555543 23344555555555555555555444332 223445555555555555555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHH----HHHHHHHhcCCHHHHHHHHhhcCC---
Q 009967 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN----SLISFYAKCGSMEDSLLVFDKLTE--- 303 (521)
Q Consensus 231 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~--- 303 (521)
..+.. +++...+---...|-+.|+...|...+.++....++.+..-+. ..++.+...++-+.|.+.++....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 55532 2233333334445555555555555555555554433322222 234445555555666666665543
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHHHHHhh
Q 009967 304 --RNIVTWNAVICGYAQNGRGEEAIEFFERMRIN---------------------------GIRPNGVTLLGLLWACNHT 354 (521)
Q Consensus 304 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------------------~~~p~~~~~~~ll~~~~~~ 354 (521)
-+...++.++..+.+...++.|......+... ++.++... ..+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 23345666667777777777777666665541 12222222 1222233344
Q ss_pred ccHHHHHHHHHHchHhCC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 009967 355 GLVEKGYSYFSQAKLEDP--GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF---DPGIGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 429 (521)
+..+....+..... ... ...++..|.-+.++|...|++.+|+.++..+.. ..+...|-.+...|...|.+++|+
T Consensus 391 ~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 44444444444443 333 344567899999999999999999999998753 234568999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+.|++++...|++..+-..|+..+.+.|+.++|.+++..+.
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999976
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=4e-12 Score=114.31 Aligned_cols=349 Identities=15% Similarity=0.116 Sum_probs=211.4
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 009967 71 LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150 (521)
Q Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 150 (521)
....+|..+|.++++--..+.|.+++++-....++.+..+||.+|.+-.-. ...++..+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 345789999999999999999999999998887899999999999874322 2378899999999999999999999
Q ss_pred HHHHcCCCHHHHHHHh----hcCCC----CCchhHHHHHHHHHcCCCHHH-HHHHHhhCCC------------CChhHHH
Q 009967 151 DLYIKLSSIEEATRVF----EDTHN----PNVVSYTTMICGLLKRERFED-ALKLFQEMPH------------RNVVSWN 209 (521)
Q Consensus 151 ~~~~~~g~~~~a~~~~----~~~~~----~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~------------~~~~~~~ 209 (521)
.+..+.|+++.|.+.+ .+|.+ |...+|..+|..+.+.++..+ +..+..++.. .|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999988776554 33332 777777777777777666543 3333322211 2344555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC----CCCCh---hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967 210 AMIGGYSQTGRNEEAVNLFIEMLREG----LVPNH---STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282 (521)
Q Consensus 210 ~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (521)
..+..|.+..+.+-|.++-.-+.... +.|+. .-|..+....++....+.....|+.++-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 66666666666666666544433211 22221 223445555555556666666666666555555666666666
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhhccHHH
Q 009967 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV---TLLGLLWACNHTGLVEK 359 (521)
Q Consensus 283 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~ 359 (521)
++..-.|.++-..+++..+..-+- .-+-+--++++..|......|+.. -+.....-|+ -++.+
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~gh------------t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e 506 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGH------------TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA--ADIKE 506 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhh------------hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHH
Confidence 666556666655555555432110 011112223333333333333322 2222221111 11111
Q ss_pred H-HHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009967 360 G-YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-------PFDPGIGFWKALLGGCQIHSNVELGEFA 431 (521)
Q Consensus 360 a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 431 (521)
+ ...-.+++ . ....+...+..+..+.|.|+.++|.+++..+ +..|.......++..-...++.-.|...
T Consensus 507 ~~e~~~~R~r-~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 507 AYESQPIRQR-A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHhhHHHHH-h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 1 11222222 2 2245556777888888999999988888654 2344444555666667777788888888
Q ss_pred HHHHHhcCC
Q 009967 432 ARRILALDP 440 (521)
Q Consensus 432 ~~~~~~~~p 440 (521)
++-+...+-
T Consensus 584 lQ~a~~~n~ 592 (625)
T KOG4422|consen 584 LQLASAFNL 592 (625)
T ss_pred HHHHHHcCc
Confidence 887766543
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=6.1e-12 Score=114.52 Aligned_cols=432 Identities=14% Similarity=0.100 Sum_probs=320.3
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 009967 72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151 (521)
Q Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 151 (521)
+...|--...--..++++..|.++|++..... ..+...|...+..=.+...+..|..+++..+..- |--...|--.+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 44556555566666789999999999998754 5566677777777788999999999999998853 222234444444
Q ss_pred HHHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHH
Q 009967 152 LYIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMP--HRNVVSWNAMIGGYSQTGRNEEAVNL 227 (521)
Q Consensus 152 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 227 (521)
.--..|++..|.++|++-.+ |+...|.+.|+--.+...++.|..++++.. .|++.+|--.+..-.+.|+...|..+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 55568999999999999876 999999999999999999999999999865 59999999999999999999999999
Q ss_pred HHHHHHCCCCCCh----hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH----
Q 009967 228 FIEMLREGLVPNH----STLPCAIIAAANIAALGMGKSFHACAVKFLGKLD-VFVGNSLISFYAKCGSMEDSLLVF---- 298 (521)
Q Consensus 228 ~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~---- 298 (521)
|....+. .-|. ..|.+...-=.....++.|..+++.++..-+.-. ...|..+...--+-|+.....+..
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 9988763 1233 3334444444566788999999999988755432 445666666556667765555433
Q ss_pred ----hhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H-----HHHHHHHH---HhhccHHHHH
Q 009967 299 ----DKLTER---NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV--T-----LLGLLWAC---NHTGLVEKGY 361 (521)
Q Consensus 299 ----~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~-----~~~ll~~~---~~~~~~~~a~ 361 (521)
+.+.+. |..+|--.+..--..|+.+...++|++.... ++|-.. . |..+=-+| ....+.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 222233 4457777788778889999999999999875 566332 2 22222222 3568899999
Q ss_pred HHHHHchHhCCCCCChhHHHHH----HHHHHhcCCHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967 362 SYFSQAKLEDPGMLKPEHYACM----VDLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (521)
++|+.... -++....+|.-+ .....++.++..|.+++.. +..-|....|...|..-.+.++++.+..+|++.+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999873 222334455544 4445688999999999987 4557999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHH
Q 009967 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTE 514 (521)
Q Consensus 437 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 514 (521)
+.+|.+..+|...+..-...|+++.|..+|+-.+.+..-..|...|--+ -.|-....-+..++.+|+.|=+-..
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY----IdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY----IDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh----hhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999988765544444333211 1233333456677777776544433
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3.1e-14 Score=134.88 Aligned_cols=270 Identities=11% Similarity=0.042 Sum_probs=170.3
Q ss_pred CHHHHHHHhhcCCC--CCc-hhHHHHHHHHHcCCCHHHHHHHHhhCCC------CChhHHHHHHHHHHhcCChHHHHHHH
Q 009967 158 SIEEATRVFEDTHN--PNV-VSYTTMICGLLKRERFEDALKLFQEMPH------RNVVSWNAMIGGYSQTGRNEEAVNLF 228 (521)
Q Consensus 158 ~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 228 (521)
+..+|...|+++.. +|+ .....+..+|...+++++|+++|+.+.+ .+...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 56788888888654 333 4455677888899999999999988875 4677888877665332 122222
Q ss_pred -HHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---
Q 009967 229 -IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER--- 304 (521)
Q Consensus 229 -~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 304 (521)
+.+... .|+ .+.+|.++.++|.-+++.+.|++.|++..+-
T Consensus 410 aq~Li~~--~~~----------------------------------sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 410 AQDLIDT--DPN----------------------------------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHHHHhh--CCC----------------------------------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 233332 233 5566666666776667777777777666652
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH
Q 009967 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383 (521)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 383 (521)
...+|+.+..-+.....+|.|...|+.... +.|.. .+|..+...|.+.++++.|+-.|+++.+..+ .+......+
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP--~nsvi~~~~ 529 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP--SNSVILCHI 529 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc--cchhHHhhh
Confidence 334666666666666667777777766554 23333 2566666667777777777777776653332 233445556
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 009967 384 VDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 461 (521)
...+.+.|+.|+|++++++.. . +.|+..--.-+..+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 666667777777777776632 1 23344444445556666777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHh
Q 009967 462 VSNIRREMKE 471 (521)
Q Consensus 462 A~~~~~~m~~ 471 (521)
|+.-|--+.+
T Consensus 610 Al~~f~~A~~ 619 (638)
T KOG1126|consen 610 ALLHFSWALD 619 (638)
T ss_pred HHHhhHHHhc
Confidence 7766655543
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=1.6e-12 Score=125.33 Aligned_cols=248 Identities=11% Similarity=0.043 Sum_probs=153.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 009967 214 GYSQTGRNEEAVNLFIEMLREGLVPNHSTLP--CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291 (521)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 291 (521)
+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++.+.+..+. ++.....+...|.+.|+|
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhH
Confidence 335555555555555555542 23332222 2234445555555555555555555533 556666677777777777
Q ss_pred HHHHHHHhhcCCCC---h--------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 009967 292 EDSLLVFDKLTERN---I--------VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360 (521)
Q Consensus 292 ~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 360 (521)
++|.+++..+.+.. . .+|..++.......+.+...++|+.+-+. .+.+......+...+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence 77777777666411 1 12333333334444556666666665332 234566777777788888888888
Q ss_pred HHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
..++++... .+ +++... ++......++.+++.+.+++.. ..|+ ......+...|...|++++|.+.|+++.+.
T Consensus 283 ~~~L~~~l~-~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 283 QQIILDGLK-RQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHh-cC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888887753 32 444322 2233334578888888777642 3444 445667777788888888888888888888
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 439 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
.| +...+..++.++.+.|+.++|.+++++-..
T Consensus 358 ~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88 556677888888888888888888887543
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=2.2e-13 Score=129.28 Aligned_cols=245 Identities=13% Similarity=0.059 Sum_probs=181.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967 220 RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLG--KLDVFVGNSLISFYAKCGSMEDSLLV 297 (521)
Q Consensus 220 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 297 (521)
+..+|+..|.....+ +.-+......+..+|...+++++++++|+.+.+..+ .-+..+|.+.+..+-+.=...---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 345666666663332 222334445556666666677777777666665432 12566677666544332222111112
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC
Q 009967 298 FDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376 (521)
Q Consensus 298 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (521)
+-.+....+.+|-++..+|.-+++.+.|++.|++.... .| ...+|+.+.+-+....++|.|...|+.+. + .+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~~ 485 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--VD 485 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--CC
Confidence 22223356789999999999999999999999999874 46 67789988888999999999999999876 2 34
Q ss_pred hhH---HHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 009967 377 PEH---YACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451 (521)
Q Consensus 377 ~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 451 (521)
+.. |-.|...|.+.++++.|+-.|++. .+.|. ......+...+.+.|+.++|+++++++.-++|.|+..-..-+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 444 455778899999999999999985 45554 4466667777899999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 009967 452 ALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.+...+++++|++.++++++.
T Consensus 566 il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh
Confidence 999999999999999999864
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=4.1e-12 Score=122.42 Aligned_cols=276 Identities=12% Similarity=-0.033 Sum_probs=180.8
Q ss_pred CCCHHHHHHHhhcCCC--CCchhHHHH-HHHHHcCCCHHHHHHHHhhCCC--CChhHHH--HHHHHHHhcCChHHHHHHH
Q 009967 156 LSSIEEATRVFEDTHN--PNVVSYTTM-ICGLLKRERFEDALKLFQEMPH--RNVVSWN--AMIGGYSQTGRNEEAVNLF 228 (521)
Q Consensus 156 ~g~~~~a~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~ 228 (521)
.|+++.|++.+....+ +++..+..+ .....+.|+++.|.+.+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555544433 112222222 2222455555555555555544 2221111 2244556666666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV-------FVGNSLISFYAKCGSMEDSLLVFDKL 301 (521)
Q Consensus 229 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 301 (521)
+++.+.. +-++..+..+...+.+.|+++.+..++..+.+.+..++. ..|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 6665543 223344555556666666666666666666665544222 12333344444555667777788877
Q ss_pred CC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh
Q 009967 302 TE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378 (521)
Q Consensus 302 ~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (521)
.+ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.++ -|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P--~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG--DTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC--CCHH
Confidence 64 57778888999999999999999999998874 4555322 23334456899999999999876665 5566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
.+..+...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++.+.+
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999999984 46899999999999999999999999999998774
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=1.1e-11 Score=121.64 Aligned_cols=315 Identities=12% Similarity=0.063 Sum_probs=174.3
Q ss_pred cCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHH
Q 009967 86 QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRV 165 (521)
Q Consensus 86 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 165 (521)
.|++++|.+++.+..+.. +-+...|..|...|-+.|+.+++...+-.+.-.. +.|...|..+.....+.|+++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 377777777777777654 4566677777777777777777766655444332 45567777777777777777777777
Q ss_pred hhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCCh--------hHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009967 166 FEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNV--------VSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234 (521)
Q Consensus 166 ~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 234 (521)
|.+..+ ++...+..-...|-+.|+...|.+.|.++.+-++ ..-..++..+...++.+.|.+.++.....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 777765 3333444455667777777777777777655211 12233445556666667777766665552
Q ss_pred -CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC---------------------------CChhH-HHHHHHHH
Q 009967 235 -GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK---------------------------LDVFV-GNSLISFY 285 (521)
Q Consensus 235 -~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~-~~~l~~~~ 285 (521)
+-..+...++.++..+.+...++.+............. ++..+ ...+.-..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 22334445556666666666666665555544431111 12222 11111112
Q ss_pred HhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967 286 AKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 361 (521)
.+.++..+++..|..... .++..|.-+..+|...|++.+|..+|..+......-+...|..+..+|...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 223333333333222221 2233455555566666666666666666555433334445555555566666666666
Q ss_pred HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 404 (521)
+.|+.+....+. +...--.|...+.+.|+.++|.+.+..+.
T Consensus 470 e~y~kvl~~~p~--~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPD--NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCC--chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 666665544432 22233445555556666666666665543
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.4e-11 Score=109.60 Aligned_cols=329 Identities=12% Similarity=0.007 Sum_probs=239.0
Q ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChh-HHHHHHHHHHh
Q 009967 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVV-SWNAMIGGYSQ 217 (521)
Q Consensus 139 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~ 217 (521)
...|...+-.....+.+.|..+.|+..|......-+..|.+.+....-..+.+.+..+...+...+.. .--.+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 34455544444555667788888888887776644445554444443344444444444333332221 11223456666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCCHHHHH
Q 009967 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK--LDVFVGNSLISFYAKCGSMEDSL 295 (521)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 295 (521)
..+.+++..-+......|.+-+...-+....+.....++++|..+|+++.+..+- -|..+|..++-.-....++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 6678888888888888876555555555666667788999999999999988432 15566666654433322332222
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCC
Q 009967 296 LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374 (521)
Q Consensus 296 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (521)
+..-.+.+-.+.|...+..-|.-.++.++|...|++..+.+ |.. ..|+.+.+-|...++...|.+-++++.+-++
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-- 395 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-- 395 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc--
Confidence 22233344556677788888889999999999999999854 544 4677777889999999999999999985554
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
.|-..|-.|.++|.-.+...-|+-+|++.. .+| |...|.+|...|.+.++.++|+..|.+++..+-.+..++..++..
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 567789999999999999999999999853 455 677999999999999999999999999999887788999999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 009967 453 LSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~ 471 (521)
|.+.++.++|.+++++-++
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999999998765
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=1.1e-11 Score=120.22 Aligned_cols=222 Identities=11% Similarity=-0.107 Sum_probs=102.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhH-------HHHHHHH
Q 009967 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV-------GNSLISF 284 (521)
Q Consensus 212 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~ 284 (521)
...+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+...+..+.+.+..+.... +..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555543 11223344444555555555555555555554443211111 1111111
Q ss_pred HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHH-HHHHHhhccHH
Q 009967 285 YAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL--LGL-LWACNHTGLVE 358 (521)
Q Consensus 285 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~--~~l-l~~~~~~~~~~ 358 (521)
-......+...+.+....+ .++..+..+...+...|++++|.+++++..+.. ||.... ..+ .......++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 1111222333334444432 355566666666666666666666666666542 333210 111 11122334555
Q ss_pred HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD---LPFDPGIGFWKALLGGCQIHSNVELGEFAARRI 435 (521)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (521)
.+.+.+++..+..+..|+.....++...+.+.|++++|.+.|+. ....|+...+..+...+...|+.++|.+++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555544443222223444555555555555555555552 223455554445555555555555555555554
Q ss_pred H
Q 009967 436 L 436 (521)
Q Consensus 436 ~ 436 (521)
+
T Consensus 397 l 397 (409)
T TIGR00540 397 L 397 (409)
T ss_pred H
Confidence 3
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=2.8e-14 Score=131.40 Aligned_cols=160 Identities=17% Similarity=0.130 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
...+..++..+.+.++++++..+++.+.... ..++...|......+.+.|+.+.|...++.+++..+. +..+.+.++.
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~ 188 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAW 188 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 3334444445555555555555555544321 1222233333333333333333333333333333322 3344444444
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 009967 284 FYAKCGSMEDSLLVFDKLT---ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360 (521)
Q Consensus 284 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 360 (521)
.+...|+.+++.+++.... ..|+..+..+..+|...|+.++|..+|++..+.. +.|......+..++...|+.++|
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 4444444444333333332 1333344444444444445555555554444421 12333344444444444444444
Q ss_pred HHHHHH
Q 009967 361 YSYFSQ 366 (521)
Q Consensus 361 ~~~~~~ 366 (521)
.++..+
T Consensus 268 ~~~~~~ 273 (280)
T PF13429_consen 268 LRLRRQ 273 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 444443
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=1e-11 Score=120.41 Aligned_cols=283 Identities=12% Similarity=0.001 Sum_probs=202.1
Q ss_pred HcCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhhcchHHH
Q 009967 185 LKRERFEDALKLFQEMPH--RN-VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS--TLPCAIIAAANIAALGMG 259 (521)
Q Consensus 185 ~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 259 (521)
...|+++.|.+.+.+..+ |+ ...+-....++...|+++.|.+.+.+..+.. |+.. .-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 356777777777776654 33 2344555678888999999999999987743 5553 333457788889999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHH----HHHHHHHcCChHHHHHHHHHH
Q 009967 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNA----VICGYAQNGRGEEAIEFFERM 332 (521)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~----li~~~~~~~~~~~A~~~~~~m 332 (521)
...++.+.+..+. ++.+...+...+.+.|+++.|.+.+..+.+ .+...+.. ........+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999866 678888999999999999999999999885 23333321 111123333333334455555
Q ss_pred HHCC---CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 009967 333 RING---IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG 408 (521)
Q Consensus 333 ~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 408 (521)
.... .+.+...+..+...+...|+.++|.+.+++..+..+-.+...............++.+.+.+.+++. +..|+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 4432 1136778888888999999999999999999755542222111111122223457788888888763 33444
Q ss_pred -H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 409 -I--GFWKALLGGCQIHSNVELGEFAAR--RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 409 -~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
+ ....++...+.+.|++++|.+.|+ ...+..| ++..+..++..+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 566788899999999999999999 5667888 555677999999999999999999998543
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=5.6e-12 Score=109.42 Aligned_cols=300 Identities=13% Similarity=0.131 Sum_probs=191.5
Q ss_pred CCCHHHHHHHhhcCCCCCchhH---HHHHHHHHcCCCHHHHHHHHhhCCC-CCh------hHHHHHHHHHHhcCChHHHH
Q 009967 156 LSSIEEATRVFEDTHNPNVVSY---TTMICGLLKRERFEDALKLFQEMPH-RNV------VSWNAMIGGYSQTGRNEEAV 225 (521)
Q Consensus 156 ~g~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~~~~~~~a~ 225 (521)
.++.++|...|-+|.+.|..++ -+|.+.|-+.|..|.|+++-+.+.+ ||. .+...|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4456666666666655333332 3445555555555555555554443 222 12333444444555555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 009967 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN 305 (521)
Q Consensus 226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 305 (521)
.+|..+.+. +.- -......|+..|-...+|++|+++-+++.+.+
T Consensus 128 ~~f~~L~de-----------------------------------~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 128 DIFNQLVDE-----------------------------------GEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHhcc-----------------------------------hhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 555554442 211 33445567777777777777777777665433
Q ss_pred hh--------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC
Q 009967 306 IV--------TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK 376 (521)
Q Consensus 306 ~~--------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 376 (521)
.. .|--+...+....+.+.|..++++..+.+ |+.+ .-..+.+.....|+++.|.+.++.+. ..+..--
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~-eQn~~yl 248 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVL-EQNPEYL 248 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHH-HhChHHH
Confidence 32 34445555556778888898888887754 4443 33455567888899999999998886 4443334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 377 PEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
+.+...|..+|...|+.++...++.++ ...++...-..+...-....-.+.|...+.+-+...| +...+..++.....
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~ 327 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhc
Confidence 557788889999999999988888774 4455655555566655666677888888888888888 66666666665443
Q ss_pred ---cCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecC
Q 009967 456 ---AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTG 495 (521)
Q Consensus 456 ---~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~ 495 (521)
.|...+-...+++|+...++..|.+......-..+.+.=.
T Consensus 328 daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~ 370 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWH 370 (389)
T ss_pred cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeee
Confidence 3568888899999998888888887777666655555433
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.7e-11 Score=110.18 Aligned_cols=282 Identities=12% Similarity=0.082 Sum_probs=184.6
Q ss_pred HHHHcCCCHHHHHHHhhcCCC---CCchhHH-HHHHHHHcCCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCC
Q 009967 151 DLYIKLSSIEEATRVFEDTHN---PNVVSYT-TMICGLLKRERFEDALKLFQEMPHR------NVVSWNAMIGGYSQTGR 220 (521)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~ 220 (521)
.++-...+.+++..-.+...+ |+..-+- ....+.-...++++|+.+|+++.+. |..+|..++-.- ..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh
Confidence 344444455555544444433 2222222 2223334455666666666666552 445565554332 221
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300 (521)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 300 (521)
.. +.++.+-...--+--+.|.-.+.+-|+-.++.++|..+|+.+++.++. ....|+.+.+-|...++...|.+.+++
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 111111111101233446666677777777777888888877777655 667788888889999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh
Q 009967 301 LTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377 (521)
Q Consensus 301 ~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 377 (521)
+.+ .|-..|-.+.++|.-.+.+.-|+-.|++..... +-|...|..|..+|.+.++.++|+..|.++. ..+ ..+.
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai-~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAI-LLG-DTEG 466 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHH-hcc-ccch
Confidence 876 456788889999999999999999999888742 3356788999999999999999999999886 333 1355
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967 378 EHYACMVDLLSRSGRFKEAKEFLYDLP--------FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 440 (521)
..+..|.+.|-+.++.++|...+.+-. ..|. ..+..-|..-+.+.+++++|.........-++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 778889999999999999988887621 1332 22333355667888999999888777766543
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.8e-11 Score=110.32 Aligned_cols=262 Identities=15% Similarity=0.085 Sum_probs=214.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282 (521)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (521)
.++........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+++.-+. .+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 355666677778888999999999999998864 456666777777889999988888888888877655 677888888
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHH
Q 009967 283 SFYAKCGSMEDSLLVFDKLTERNI---VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVE 358 (521)
Q Consensus 283 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~ 358 (521)
-.|.-.|+..+|++.|.+...-|. ..|-.+..+|+-.|..|+|...+....+. .|.. .-+..+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHH
Confidence 888889999999999999876443 58999999999999999999999987763 2222 22333444588899999
Q ss_pred HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 009967 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--------FDP-GIGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~ 429 (521)
.|.++|.++....+ .|+.+++-+.-.....+.+.+|..+|+... ..+ -..+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~ai~P--~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAIAP--SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhcCC--CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999875554 466678888777778899999999998632 122 3447888999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
..+++++.+.|.++.++..++-+|...|+++.|++.|.+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999855
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=7.3e-11 Score=108.13 Aligned_cols=383 Identities=11% Similarity=0.014 Sum_probs=255.6
Q ss_pred hhcccCCChhHHHHHhccCC--CCC-cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC-hhhHHHHHHHHcCCCChH
Q 009967 50 SCGSESDKFSSVHQVFDEVP--DLN-VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS-EFTFGSVIPSSTALEDLN 125 (521)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~ 125 (521)
.-|-++|++++|++.+.... .|+ +.-|......|..-|+|+++.+---+..+. .|+ +-.+..-.+++-..|+++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHH
Confidence 36678999999999998765 366 788999999999999999998887777764 454 335556666777788887
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHH-----------------
Q 009967 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLL----------------- 185 (521)
Q Consensus 126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~----------------- 185 (521)
+|+.=....--.+--.+..+--.+=+.+-+.| ...+.+-+..-.. |+.....+....+.
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~ 279 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAA 279 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhh
Confidence 77543322211111111111111111111111 1223333331111 22222222111111
Q ss_pred --------cC---CCHHHHHHHHhhCC-------CCC---------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 009967 186 --------KR---ERFEDALKLFQEMP-------HRN---------VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVP 238 (521)
Q Consensus 186 --------~~---g~~~~a~~~~~~~~-------~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 238 (521)
.. ..+..|.+.+.+-. ..+ ..+...-...+.-.|+.-.|..-|+...... |
T Consensus 280 l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--~ 357 (606)
T KOG0547|consen 280 LAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--P 357 (606)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--c
Confidence 00 12333333332211 111 1223333334556789999999999998865 3
Q ss_pred Chhh-HHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHH
Q 009967 239 NHST-LPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI---VTWNAVIC 314 (521)
Q Consensus 239 ~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~ 314 (521)
.... |.-+...|....+.......|+.+.+.++. ++.+|..-.+++.-.++++.|..-|++...-++ ..|-.+..
T Consensus 358 ~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 358 AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC 436 (606)
T ss_pred ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 3333 777788899999999999999999998877 778888888888889999999999999987443 45555666
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC------CCChhHHHHHHHHHH
Q 009967 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG------MLKPEHYACMVDLLS 388 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~ 388 (521)
+..+.+.+++++..|++..+. ++.-...|+.....+...++++.|.+.|+..+...+. .+.+.+..+++..-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 666889999999999998875 4445568888999999999999999999998744433 233334444444444
Q ss_pred hcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967 389 RSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 389 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 440 (521)
+ +++..|.+++++. .+.|. ...+..|...-.+.|+.++|+++|++...+-.
T Consensus 516 k-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 516 K-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred h-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4 8999999999985 44554 34889999999999999999999999988655
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=1.2e-10 Score=104.46 Aligned_cols=282 Identities=15% Similarity=0.091 Sum_probs=180.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCC----CchhHHHHHHHHHcCCCHHHHHHH
Q 009967 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP----NVVSYTTMICGLLKRERFEDALKL 196 (521)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~ 196 (521)
.|++.+|++....-.+.+ +.....|..-+.+--..|+.+.+-.++.+.-++ +...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666555544 222233334444555556666666666555441 222333444445555555555554
Q ss_pred HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC
Q 009967 197 FQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273 (521)
Q Consensus 197 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (521)
++++.+ .++........+|.+.|++.....++..+.+.|.-.++..- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 444332 34455555555555555555555555555555533322110 00
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 350 (521)
...+++.+++-....+..+.-...++.... .++..-.+++.-+.+.|+.++|.++.++..+.+..|+-. ..-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 234566667666666666666667777763 567777888888999999999999999998887766622 2224
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~ 429 (521)
+.+.++.+.-.+..++-....+..| ..+.+|...|.+.+.|.+|.+.|+. ++..|+..+|.-+..++.+.|+..+|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 5667777777777777665666444 6788899999999999999998886 456888888998999999999999999
Q ss_pred HHHHHHHh
Q 009967 430 FAARRILA 437 (521)
Q Consensus 430 ~~~~~~~~ 437 (521)
+..++.+.
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 88888775
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=8.4e-11 Score=102.26 Aligned_cols=282 Identities=11% Similarity=0.093 Sum_probs=192.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-CCch------hHHHHHHHHHcCCCHHHH
Q 009967 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-PNVV------SYTTMICGLLKRERFEDA 193 (521)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~a 193 (521)
..+.++|.+.|-+|.+.. +.+..+.-+|.+.|-+.|..|+|+++-..+.+ ||.. ....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 356777777777777733 44555666777777777888888777777665 4432 233455667778888888
Q ss_pred HHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 009967 194 LKLFQEMPHR---NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270 (521)
Q Consensus 194 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 270 (521)
+.+|..+.+. -..+...|+..|-...+|++|+++-+++.+.+-.+... -
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----e------------------------ 178 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----E------------------------ 178 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----H------------------------
Confidence 8888888763 23567778999999999999999999888865333211 1
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009967 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER---NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347 (521)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 347 (521)
-...|.-|...+....+.+.|...+.+..+. .+..--.+...+...|+++.|.+.|+...+.+..--..+...|
T Consensus 179 ---IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 179 ---IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1233555666666777888888888877653 2334445667788888888888888888886533334577788
Q ss_pred HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHh---cC
Q 009967 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL-YDLPFDPGIGFWKALLGGCQI---HS 423 (521)
Q Consensus 348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~---~g 423 (521)
..+|...|+.++...++.++.+.. +.+..-..+.+.-....-.+.|..++ +.+..+|+...+..++..... .|
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccccc
Confidence 888888999998888888876333 34444555555554455555665554 446668998888888887543 24
Q ss_pred CHHHHHHHHHHHHh
Q 009967 424 NVELGEFAARRILA 437 (521)
Q Consensus 424 ~~~~A~~~~~~~~~ 437 (521)
...+....++.++.
T Consensus 333 ~~k~sL~~lr~mvg 346 (389)
T COG2956 333 RAKESLDLLRDMVG 346 (389)
T ss_pred chhhhHHHHHHHHH
Confidence 45666666666665
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.6e-10 Score=103.60 Aligned_cols=271 Identities=11% Similarity=0.039 Sum_probs=149.8
Q ss_pred CCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHH
Q 009967 55 SDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131 (521)
Q Consensus 55 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 131 (521)
.|+|..|++...+-.+ .....|..-.++--+.|+.+.+-..+.+..+....++...+.+..+.....|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4777777777765332 2233444444555566777777777777766422344444555555566777777777777
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCC-----------CchhHHHHHHHHHcCCCHHHHHHHHhhC
Q 009967 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNP-----------NVVSYTTMICGLLKRERFEDALKLFQEM 200 (521)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 200 (521)
.++.+.+ +-++........+|.+.|++.....++..+.+. ...+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777655 445666667777777777777777777776651 1234566666666666666666666666
Q ss_pred CC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhH
Q 009967 201 PH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFV 277 (521)
Q Consensus 201 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 277 (521)
++ .++..-.+++.-+...|+.++|.++..+..+++..|+ ...+..+.+.++...-.+..+...+.-+. ++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhH
Confidence 54 3455556666666677777777777666666554444 11222233334444333333333332221 2244
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~ 331 (521)
+.+|...|.+.+.|.+|...|+...+ |+..+|+.+..++.+.|+..+|.+..++
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 44444444444444444444444332 4444444444444444444444444444
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=4.3e-11 Score=107.25 Aligned_cols=198 Identities=17% Similarity=0.077 Sum_probs=161.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 350 (521)
....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345667778888889999999999988764 345677888888999999999999999988754 3455677778888
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 428 (521)
+...|++++|...++++............+..+..++...|++++|...+++.. ..| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999987433222345567788899999999999999998743 233 456788888899999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
...++++.+..|.++..+..++..+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888889999999999999999999998887543
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.4e-09 Score=97.82 Aligned_cols=387 Identities=11% Similarity=0.018 Sum_probs=248.7
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCcccHHHHH-HHHHhcC-ChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTII-GRFAKQH-HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 125 (521)
.+.+|...|+-+.|......+++.-..--+.+| ..+-+.| +-.++.--+.+.... .+.-......++.. .- .
T Consensus 103 ~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre-cp~aL~~i~~ll~l-~v----~ 176 (564)
T KOG1174|consen 103 AAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE-CPMALQVIEALLEL-GV----N 176 (564)
T ss_pred HHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh-cchHHHHHHHHHHH-hh----c
Confidence 677777778888888888877754333333333 3333332 222222222222221 11111111111110 11 1
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHc--CCCHHHHHHHhhcC--CC---CCchhHHHHHHHHHcCCCHHHHHHHHh
Q 009967 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIK--LSSIEEATRVFEDT--HN---PNVVSYTTMICGLLKRERFEDALKLFQ 198 (521)
Q Consensus 126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~--~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 198 (521)
.+...-..|-...++|...+....+.+++. .++...|...+--+ .. .|+.....+...+...|+.++|+..|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 111111223333344554444444544433 34444444433222 22 466677888888888899999998888
Q ss_pred hCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh
Q 009967 199 EMPHRNVVSWNAM---IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV 275 (521)
Q Consensus 199 ~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 275 (521)
+...-|+.+...| .-.+.+.|++++...+...+.... .-+...+-.-.......+++..|..+-+..++.... +.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cc
Confidence 8776544433332 334567788888888877776532 122223333344445677888888888887776554 55
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH
Q 009967 276 FVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL-WAC 351 (521)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~ 351 (521)
..+-.-...+.+.|+.+.|.-.|+.... -+..+|..|+.+|...|.+.+|..+-+...+. ++.+..+...+. ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 5665566788899999999999998764 46789999999999999999999888876553 344566666553 333
Q ss_pred -HhhccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009967 352 -NHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 352 -~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 428 (521)
....--++|..++++..... |+ ....+.+...+...|+.++++.++++ +...||....+.|...+...+.+++|
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~---P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKIN---PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhhccC---CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHH
Confidence 34445689999999876333 44 44677888999999999999999998 55689999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHH
Q 009967 429 EFAARRILALDPEDVSSY 446 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~ 446 (521)
+..|..+++++|++..+.
T Consensus 491 m~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHhcCccchHHH
Confidence 999999999999776553
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=4.4e-09 Score=92.80 Aligned_cols=410 Identities=10% Similarity=0.058 Sum_probs=225.1
Q ss_pred hhhcccCCChhHHHHHhccCCCCC----cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 49 VSCGSESDKFSSVHQVFDEVPDLN----VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 49 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
+.-+....|+..|+.+++--...+ ..+-..+...+.+-|++++|...+..+.+.. .|+...+..+.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 445556677888888876432211 1222234556677888888888888877654 56666666666555566777
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCC-
Q 009967 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR- 203 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 203 (521)
.+|..+-.. .+.++-.-..++..-.+.|+-++-..+-+.+.+.. .---+|.......-.+++|++++.++...
T Consensus 108 ~eA~~~~~k-----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEK-----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhh-----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777666443 22333334445556667777666666555554421 22233444444556789999999998864
Q ss_pred -ChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc--chHHHHHH--------------HHH
Q 009967 204 -NVVSWNA-MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA--ALGMGKSF--------------HAC 265 (521)
Q Consensus 204 -~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~--------------~~~ 265 (521)
.....|. +.-+|.+..-++-+.++++-.++.- ||... ..-+.+|..-. +-..+..- .+.
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdSti-A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTI-AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHH-HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 4444554 4557788888898888988887752 55433 33334443211 11111111 112
Q ss_pred HHHcCC------------CC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCC-------
Q 009967 266 AVKFLG------------KL-----DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGR------- 321 (521)
Q Consensus 266 ~~~~~~------------~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~------- 321 (521)
+.+.+. -| -+..-..|+-.|.+.+++++|..+.+.+...++.-|-.-.-.++..|+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 222111 00 112223355567889999999999998876555444333333333332
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 009967 322 GEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFL 400 (521)
Q Consensus 322 ~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 400 (521)
..-|...|+-.-+.+..-|.. .-.++..++.-..+++++..+++.+. ..=...|... -.+..+++..|++.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn-~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFN-LNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhh-hHHHHHHHHhcChHHHHHHH
Confidence 334444444333333222211 12233344445556777777776664 3322223322 24667777777777777777
Q ss_pred hhCCCCCC---HHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 401 YDLPFDPG---IGFW-KALLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 401 ~~~~~~~~---~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
-.+. .|+ ..+| ..|..+|.+.++.+.|-.++-++-. |. ....+..++.-|.+.+.+--|.+.|+.+....
T Consensus 417 ~~is-~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 417 IRIS-GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hhhc-ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 6654 222 2233 3344556677777777665543321 22 22334445666777777766666666655443
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=2.3e-10 Score=112.04 Aligned_cols=246 Identities=9% Similarity=0.072 Sum_probs=135.5
Q ss_pred HHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 009967 94 YLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN 173 (521)
Q Consensus 94 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 173 (521)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.....+.+...++.++......|+.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556666777777777777777777777777776 7777776666667777777777777777666554 566
Q ss_pred chhHHHHHHHHHcCCCHHH---HHHHHhhCCC---------------------C-ChhHHHHHHHHHHhcCChHHHHHHH
Q 009967 174 VVSYTTMICGLLKRERFED---ALKLFQEMPH---------------------R-NVVSWNAMIGGYSQTGRNEEAVNLF 228 (521)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~---a~~~~~~~~~---------------------~-~~~~~~~l~~~~~~~~~~~~a~~~~ 228 (521)
..+|..|..+|.+.||+.. +++.+..+.. | ....-...+....-.|-++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777554 2221111110 0 0011112222333344444444444
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC----
Q 009967 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER---- 304 (521)
Q Consensus 229 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 304 (521)
..+-... ...++..+++-+. -+....+++.+......-.|++.++.+++++-.-+|+.+.|..++.+|.+.
T Consensus 163 ~~~Pvsa---~~~p~~vfLrqnv--~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 163 AKVPVSA---WNAPFQVFLRQNV--VDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hhCCccc---ccchHHHHHHHhc--cCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 3332110 0001111122211 123334444444433322566777777777777777777777777777652
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355 (521)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 355 (521)
+.+-|-.|+-+ .++...++.+++-|.+.|+.|++.|+...+-.+...|
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 23333333333 5666667777777777777777777766665555533
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=1.8e-09 Score=105.99 Aligned_cols=262 Identities=13% Similarity=0.052 Sum_probs=163.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282 (521)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (521)
++..+|.+++.+-...|+.+.|..++.+|.+.|.+.+.+-|-.++-+ .++...+..++.-|.+.|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 67888888888888889999999999999998888777777666655 777888888888888888888887776655
Q ss_pred HHHHhcCCHH----------------------------------------------------------------------
Q 009967 283 SFYAKCGSME---------------------------------------------------------------------- 292 (521)
Q Consensus 283 ~~~~~~g~~~---------------------------------------------------------------------- 292 (521)
..+..+|...
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e 358 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGE 358 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCc
Confidence 5444422211
Q ss_pred HHHHHHhhcCC-------CChhHHHHHHHHHHHcCC----------------------hHHHHHHHHHHHHCCCCCCHH-
Q 009967 293 DSLLVFDKLTE-------RNIVTWNAVICGYAQNGR----------------------GEEAIEFFERMRINGIRPNGV- 342 (521)
Q Consensus 293 ~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~----------------------~~~A~~~~~~m~~~~~~p~~~- 342 (521)
..+++-..+.. .++..|..++.-|.+.-+ ..+..++... ..||..
T Consensus 359 ~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~l 433 (1088)
T KOG4318|consen 359 EVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFL 433 (1088)
T ss_pred hHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHH
Confidence 11111111110 011122222222211100 0000000000 112211
Q ss_pred ---------------------------HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967 343 ---------------------------TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395 (521)
Q Consensus 343 ---------------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (521)
.-+.++..|+..-+..+++..-+... ..-+ +..|..|++.+....+.+.
T Consensus 434 r~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~ 509 (1088)
T KOG4318|consen 434 RQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEY 509 (1088)
T ss_pred HHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHH
Confidence 11223333333333444443333221 1111 1458889999999999999
Q ss_pred HHHHHhhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967 396 AKEFLYDLPF-----DPGIGFWKALLGGCQIHSNVELGEFAARRILAL---DPEDVSSYVMLSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 396 A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (521)
|..+.++... .-|...+..+.....+.+....+..+++++.+. .|....++..+.+.....|+.+...+..+
T Consensus 510 Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d 589 (1088)
T KOG4318|consen 510 ALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLAD 589 (1088)
T ss_pred HHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHH
Confidence 9999988751 234446777888888999999999999998873 34445677778888888999999999999
Q ss_pred HHHhCCCcc
Q 009967 468 EMKEKGMTR 476 (521)
Q Consensus 468 ~m~~~g~~~ 476 (521)
-++..|+.-
T Consensus 590 ~lvslgl~e 598 (1088)
T KOG4318|consen 590 ILVSLGLSE 598 (1088)
T ss_pred HHHHhhhhh
Confidence 999888766
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.6e-09 Score=101.47 Aligned_cols=238 Identities=11% Similarity=0.033 Sum_probs=146.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 009967 213 GGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME 292 (521)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 292 (521)
.++...|+..+-..+=.++.+.. +-.+.+|-++.--|...|...+|++++......... -...|-.+...|.-.|.-+
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHH
Confidence 34444444444433333443321 222333444433344444444444444444433222 2345666677777777777
Q ss_pred HHHHHHhhcCC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967 293 DSLLVFDKLTE--RNI-VTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 293 ~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
.|...+..+.+ |.. ..+--+..-|.+.+++..|.+.|.+... +-| |+...+-+.-.....+.+.+|..+|+...
T Consensus 364 QAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 364 QAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 77777666554 111 1222234456777888888888887775 345 44455555555666788888888887764
Q ss_pred HhC----CCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 369 LED----PGM-LKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 369 ~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
..- +-. -...+++.|..+|.+.+++++|+..+++.. .+.+..++.++...|...|+++.|++.|.+++.+.|+
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 111 111 134468889999999999999999998732 2567778888888899999999999999999999998
Q ss_pred CchHHHHHHHHHH
Q 009967 442 DVSSYVMLSNALS 454 (521)
Q Consensus 442 ~~~~~~~l~~~~~ 454 (521)
+..+-..|..+..
T Consensus 522 n~~~~~lL~~aie 534 (611)
T KOG1173|consen 522 NIFISELLKLAIE 534 (611)
T ss_pred cHHHHHHHHHHHH
Confidence 7666565555543
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.2e-10 Score=101.43 Aligned_cols=230 Identities=11% Similarity=-0.023 Sum_probs=191.4
Q ss_pred ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh-HHHHHHHH
Q 009967 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIV-TWNAVICG 315 (521)
Q Consensus 239 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~ 315 (521)
|..--..+..+|.+.|.+.+|++.++..++... -+.+|..|.+.|.+..++..|..+|.+-.+ |..+ ....+...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 334445788899999999999999998887754 556777788999999999999999998876 4334 44456777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395 (521)
Q Consensus 316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (521)
+-..++.++|.++++...+.. +.+.....++...|.-.++++.|..+|+++. .-|. .++..|+.+.-+|.-.+++|-
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhh
Confidence 888899999999999988853 3456677777788889999999999999997 5554 577889999999999999999
Q ss_pred HHHHHhhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 396 AKEFLYDLP---FDPG--IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 396 A~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
++.-|++.. ..|+ ..+|-.+.......||+..|.+.|+-++..+|++...++.|+-.-.+.|+.++|..+++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 998887732 1454 44888888888899999999999999999999999999999999999999999999999876
Q ss_pred hCC
Q 009967 471 EKG 473 (521)
Q Consensus 471 ~~g 473 (521)
+..
T Consensus 457 s~~ 459 (478)
T KOG1129|consen 457 SVM 459 (478)
T ss_pred hhC
Confidence 543
No 61
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.32 E-value=4.2e-08 Score=93.38 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHchHhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhhCCC--CCC--HHHHHHHHHHHHhcCCHHHH
Q 009967 355 GLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDLPF--DPG--IGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A 428 (521)
..++.|+.+|+++.+.++ |... .|-.....--+.|-...|+.++++... ++. ...|+..|.--+..=-+..-
T Consensus 564 ~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 564 TKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 357778888887764332 3221 233333333455777777777776532 222 22455555433333233344
Q ss_pred HHHHHHHHhcCCCC--chHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 429 EFAARRILALDPED--VSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 429 ~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
..+|+++++.-|++ ...-...+..-.+.|..+.|+.++.-
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 55556665554532 12233344445555666666666554
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=1.3e-09 Score=109.97 Aligned_cols=262 Identities=13% Similarity=0.016 Sum_probs=183.7
Q ss_pred ChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHh---------hcchHHHHHHHHHHHH
Q 009967 204 NVVSWNAMIGGYSQ-----TGRNEEAVNLFIEMLREGLVPNHS-TLPCAIIAAAN---------IAALGMGKSFHACAVK 268 (521)
Q Consensus 204 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 268 (521)
+...|...+.+-.. .+++++|...|++..+. .|+.. .+..+..++.. .++++.|...++.+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555555555322 23467899999998875 36543 34444444332 2447899999999998
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HH
Q 009967 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TL 344 (521)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~ 344 (521)
..+. +...+..+..++...|++++|...|+++.+ | +...+..+...+...|++++|...+++..+.. |+.. .+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 8766 778888888999999999999999999875 4 34578888999999999999999999998853 5532 33
Q ss_pred HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHHHHHhc
Q 009967 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIG-FWKALLGGCQIH 422 (521)
Q Consensus 345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~ 422 (521)
..++..+...|++++|...++++....+ +.++..+..+..+|...|++++|...++++. ..|+.. ..+.+...+...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3344456668999999999998864432 1245567788889999999999999998864 344433 455555566766
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
| +.|...++++.+..-..+.-.......|.-.|+.+.+... +++.+.|-
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 6 4788877777763222222222366667777787777766 88877653
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=7.4e-08 Score=90.95 Aligned_cols=174 Identities=15% Similarity=0.102 Sum_probs=116.5
Q ss_pred CCHHHHHHHHhhcCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhccHHHHHHH
Q 009967 289 GSMEDSLLVFDKLTERN-IVTWNAVICGYA--QNGRGEEAIEFFERMRINGIRPNG--VTLLGLLWACNHTGLVEKGYSY 363 (521)
Q Consensus 289 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~ 363 (521)
+..+.+.++-....... ...+.+++.... +...+..+.+++...-+.. |.. ......+......|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34455555555555422 233444444332 2235777888888776643 443 3444555667889999999999
Q ss_pred HH--------HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCCHH-HHHHHHHHHHhcCCHH
Q 009967 364 FS--------QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL--------PFDPGIG-FWKALLGGCQIHSNVE 426 (521)
Q Consensus 364 ~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~-~~~~l~~~~~~~g~~~ 426 (521)
+. .+. ..+ ..+.+..++...+.+.++.+.|..++.+. ...+... .+..++..-.+.|+.+
T Consensus 399 l~~~~~~~~ss~~-~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSIL-EAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhh-hhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 442 223 45566778888888888877676666542 2232222 4555555666779999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 427 LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 427 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
+|..++++++..+|++..+...++.+|++. +.+.|..+-+.
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999999999999999999999999887 46777766554
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-07 Score=85.15 Aligned_cols=279 Identities=12% Similarity=-0.007 Sum_probs=203.6
Q ss_pred cCCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhcchHHH
Q 009967 186 KRERFEDALKLFQEMP-----HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST-LPCAIIAAANIAALGMG 259 (521)
Q Consensus 186 ~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a 259 (521)
-.++...+...+-.+. ..|+.....+..++...|+.++|+-.|++.+..+ |+..+ .....-.+...|+++..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH
Confidence 3455555554444333 2478889999999999999999999999987743 54332 22333445678888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009967 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336 (521)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 336 (521)
..+...+....-. +...|-.-+......++++.|..+-++..+ .++..|-.-...+...|+.++|.-.|+......
T Consensus 286 ~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 286 SALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 8887777654322 222333334445567889999999888876 344455555667888999999999999887642
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHhh-CCCCCCHH-HH
Q 009967 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV-DLLS-RSGRFKEAKEFLYD-LPFDPGIG-FW 412 (521)
Q Consensus 337 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~-~~~~~~~~-~~ 412 (521)
+-+-..|..|+++|...|.+.+|.-.-+......+ -+..+...+. ..+. ...--++|.+++++ ++.+|+.. ..
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV 441 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAV 441 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHH
Confidence 23567999999999999999998877776653443 3444555442 2222 22345789999987 56678744 77
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
..+...|...|..+.++.++++.+...| |....+.|+..+...+.+.+|.+.|....+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888889999999999999999999999 888899999999999999999999988654
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=2.2e-08 Score=97.26 Aligned_cols=367 Identities=14% Similarity=0.067 Sum_probs=239.7
Q ss_pred CCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CC-chh
Q 009967 102 LNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN----PN-VVS 176 (521)
Q Consensus 102 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~ 176 (521)
..+..|...|..+.-++...|+++.+.+.|++.... .-.....|+.+...|...|.-..|..+++.... |+ ...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 345567778888887888888888888888887653 344566788888888888888888888877654 22 222
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCC-
Q 009967 177 YTTMICGLL-KRERFEDALKLFQEMPH--------RNVVSWNAMIGGYSQT-----------GRNEEAVNLFIEMLREG- 235 (521)
Q Consensus 177 ~~~li~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~~~- 235 (521)
+-..-..|. +.+.+++++++-.+... -....|..+.-+|... ....++++.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 222223333 34556655555444332 1334444444444321 12346777777776643
Q ss_pred CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h------
Q 009967 236 LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-I------ 306 (521)
Q Consensus 236 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~------ 306 (521)
..|+...| +.--++..++++.|.....+..+.+...+...|..|.-++.-.+++.+|+.+.+...+ ++ .
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 33333333 2334567788888999888888887777888888888888888888888888876653 11 0
Q ss_pred --------------hHHHHHHHHHH-----------------------HcCChHHHHHHHHHHH--------HCC-----
Q 009967 307 --------------VTWNAVICGYA-----------------------QNGRGEEAIEFFERMR--------ING----- 336 (521)
Q Consensus 307 --------------~~~~~li~~~~-----------------------~~~~~~~A~~~~~~m~--------~~~----- 336 (521)
.|...++..+- ...+..+|.+....+. ..|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 11111111111 0011111111111110 000
Q ss_pred ----CC--CCH------HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-C
Q 009967 337 ----IR--PNG------VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-L 403 (521)
Q Consensus 337 ----~~--p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~ 403 (521)
+. |+. ..|......+...+..++|...+.++....+ .....|......+...|.+++|.+.|.. +
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~--l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP--LSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch--hhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 11 111 1233444556677778888877777643332 4555677778888899999999998876 4
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 404 PFDPG-IGFWKALLGGCQIHSNVELGEF--AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 404 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
...|+ +.+..++...+...|+...|.. ++..+++.+|.++.+|..++..+.+.|+.+.|.+.|....+..
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 45665 5589999999999999888888 9999999999999999999999999999999999999887654
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=8.6e-10 Score=106.10 Aligned_cols=228 Identities=18% Similarity=0.168 Sum_probs=158.0
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C-C--
Q 009967 243 LPCAIIAAANIAALGMGKSFHACAVKF-----LG-KLDV-FVGNSLISFYAKCGSMEDSLLVFDKLTE-------R-N-- 305 (521)
Q Consensus 243 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~-- 305 (521)
+..+...|...|+++.|...++..++. |. .|.+ ...+.+...|...+++.+|..+|+++.. + +
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333444455555555555544444432 11 1111 1223466778888888888888887763 1 2
Q ss_pred -hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCC--CCC
Q 009967 306 -IVTWNAVICGYAQNGRGEEAIEFFERMRI-----NGI-RPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDP--GML 375 (521)
Q Consensus 306 -~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~ 375 (521)
..+++.|..+|.+.|++++|..++++..+ .|. .|... .++.+...|...+++++|..++++..+... ..+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 24777888889999999988888887644 122 23333 455666678899999999988887653322 111
Q ss_pred C----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-------C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 009967 376 K----PEHYACMVDLLSRSGRFKEAKEFLYDLP-------F--DPG-IGFWKALLGGCQIHSNVELGEFAARRILAL--- 438 (521)
Q Consensus 376 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 438 (521)
+ ..+++.|...|...|++++|.+++++.. . .+. ...++.+...|.+.+++++|.++|.+...+
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 1 3478999999999999999999998742 1 222 336788888999999999999999988763
Q ss_pred -CCC---CchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 439 -DPE---DVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 439 -~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+|+ ...+|..|+..|.+.|++++|.++.+...
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 454 44578899999999999999999988875
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=1.9e-09 Score=96.51 Aligned_cols=196 Identities=19% Similarity=0.225 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 009967 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284 (521)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 284 (521)
...+..+...+...|++++|...+++..... |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 4566677777777777777777777776543 33 23334444445
Q ss_pred HHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHH
Q 009967 285 YAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKG 360 (521)
Q Consensus 285 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a 360 (521)
+...|++++|.+.+++..+ .+...+..+...+...|++++|...+++.......| ....+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554442 223344455555555566666666666555432111 223444455556666666666
Q ss_pred HHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
...+++.....+ .+...+..+...+...|++++|...+++.. .+.+...+..++..+...|+.+.|....+.+...
T Consensus 155 ~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQIDP--QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666666543332 234455566666666666666666665532 1233444445555566666666666666655544
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1e-11 Score=80.28 Aligned_cols=50 Identities=30% Similarity=0.513 Sum_probs=44.6
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcC
Q 009967 71 LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA 120 (521)
Q Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 120 (521)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988764
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.4e-09 Score=109.76 Aligned_cols=227 Identities=11% Similarity=-0.012 Sum_probs=172.1
Q ss_pred ChhhHHHHHHHHHh-----hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-
Q 009967 239 NHSTLPCAIIAAAN-----IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK---------CGSMEDSLLVFDKLTE- 303 (521)
Q Consensus 239 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~- 303 (521)
+...|...+.+... .++.+.|...++++.+..+. +...+..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 33444455554322 24568899999999987655 45566666665542 3458899999999886
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHH
Q 009967 304 --RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380 (521)
Q Consensus 304 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (521)
.+...+..+...+...|++++|...|++..+.+ |+ ...+..+..++...|++++|...++++....+..+ ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA--AAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--hhH
Confidence 355688888888999999999999999999854 55 55778888889999999999999999985555322 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967 381 ACMVDLLSRSGRFKEAKEFLYDLP--FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457 (521)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 457 (521)
..++..+...|++++|...+++.. ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 344555667899999999998753 1354 4456777788889999999999999998888888888888888888888
Q ss_pred ChHHHHHHHHHHHhC
Q 009967 458 KWDNVSNIRREMKEK 472 (521)
Q Consensus 458 ~~~~A~~~~~~m~~~ 472 (521)
++|...++.+.+.
T Consensus 490 --~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 --ERALPTIREFLES 502 (553)
T ss_pred --HHHHHHHHHHHHH
Confidence 4888888887654
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=2.7e-07 Score=88.07 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=128.6
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhHHC-CCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 009967 74 VSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL 152 (521)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (521)
..|-..+..+.++|+...-...|+..... .+......|...+......+-++.+..+|+..++. .|.. -+.-+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHHH
Confidence 47888888889999999999999887653 44556677888888888889999999999998873 3433 6677888
Q ss_pred HHcCCCHHHHHHHhhcCCC----------CCchhHHHHHHHHHcCCC---HHHHHHHHhhCCC--CC--hhHHHHHHHHH
Q 009967 153 YIKLSSIEEATRVFEDTHN----------PNVVSYTTMICGLLKRER---FEDALKLFQEMPH--RN--VVSWNAMIGGY 215 (521)
Q Consensus 153 ~~~~g~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~--~~--~~~~~~l~~~~ 215 (521)
+++.+++++|.+.+..... .+-..|..+-...++.-+ --....+++.+.. +| ...|++|+.-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 8999999999999988875 233456655555554432 2234455555544 23 46799999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc
Q 009967 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254 (521)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 254 (521)
.+.|.+++|..+|++....- .+..-|..+..+|+.-.
T Consensus 259 Ir~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHH
Confidence 99999999999999987743 45555666666665543
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.25 E-value=2.2e-11 Score=78.67 Aligned_cols=50 Identities=34% Similarity=0.618 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009967 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353 (521)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 353 (521)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=9.6e-10 Score=95.84 Aligned_cols=229 Identities=13% Similarity=0.061 Sum_probs=190.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 009967 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287 (521)
Q Consensus 208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (521)
-+.+..+|.+.|.+.+|.+.++.-+.. .|-+.||..+-.+|.+......|..++.+-++.-+. ++....-..+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHH
Confidence 367889999999999999999988875 477778999999999999999999999888876433 56566667788888
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 009967 288 CGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364 (521)
Q Consensus 288 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 364 (521)
.++.++|.++|+...+ .++.....+...|.-.++++-|+.+++++...|+ -+...|+.+.-+|...++++-+..-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999999876 4666777778888999999999999999999986 46778888888999999999999999
Q ss_pred HHchHhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967 365 SQAKLEDPGMLK--PEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 365 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 440 (521)
++.... -..|+ ..+|-.+.......|++.-|.+.|+-. ..+++ ...++.|.-.-.+.|++++|..++..+....|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 888633 22233 457888999999999999999999874 33444 44889998888999999999999999999988
Q ss_pred C
Q 009967 441 E 441 (521)
Q Consensus 441 ~ 441 (521)
.
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 5
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=1.2e-07 Score=92.67 Aligned_cols=408 Identities=11% Similarity=0.082 Sum_probs=245.8
Q ss_pred hhhcccCCChhHHHHHhccCCC--CCcc-cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHc------
Q 009967 49 VSCGSESDKFSSVHQVFDEVPD--LNVV-SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST------ 119 (521)
Q Consensus 49 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~------ 119 (521)
.+.+...|++++|++.++.... .|.. ........+.+.|+.++|..+|..+.+.+ |+...|...+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 4566788999999999977553 3443 45566788899999999999999999876 66665555444443
Q ss_pred CCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH-HHHHHHhhcCCCCC-chhHHHHHHHHHcCCCHHHHHHHH
Q 009967 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI-EEATRVFEDTHNPN-VVSYTTMICGLLKRERFEDALKLF 197 (521)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 197 (521)
...+.+....+|+.+...- |.......+.-.+.....+ ..+...+..+...+ +.++..+-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 1235677788888776642 3222222221111111112 12223333333323 334555555555444444444444
Q ss_pred hhCC------------------CCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcch
Q 009967 198 QEMP------------------HRNV--VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAAL 256 (521)
Q Consensus 198 ~~~~------------------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 256 (521)
.... .|+. .++..+...|-..|++++|++++++...+. |+ +..|..-.+.+...|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence 3321 1233 345677888999999999999999998864 55 56777888999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----------HH--HHHHHHHHHcCChHH
Q 009967 257 GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIV----------TW--NAVICGYAQNGRGEE 324 (521)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~~~~~~ 324 (521)
.+|...++.+.+.... |..+-+-.+..+.+.|++++|.+++.....++.. .| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999988766 7777788888999999999999999988765421 22 334677889999988
Q ss_pred HHHHHHHHHHC--CC---CCC----------HHHHHHHHHHHHhhc-------cHHHHHHHHHHchHhCCCC-C------
Q 009967 325 AIEFFERMRIN--GI---RPN----------GVTLLGLLWACNHTG-------LVEKGYSYFSQAKLEDPGM-L------ 375 (521)
Q Consensus 325 A~~~~~~m~~~--~~---~p~----------~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~-~------ 375 (521)
|++.|....+. .+ +-| ..+|..+++..-+.. -...|.++|-.+. ..+.. .
T Consensus 324 ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~-d~~~~~~~~~~~~ 402 (517)
T PF12569_consen 324 ALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELH-DKPEAKQGEEQEA 402 (517)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-cCccccccccccc
Confidence 88777665431 11 112 222333332211111 1133455554443 22110 0
Q ss_pred -----ChhHHHHHHHHH---HhcCCHHHHHHHH-h----------hC------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009967 376 -----KPEHYACMVDLL---SRSGRFKEAKEFL-Y----------DL------PFDPGIGFWKALLGGCQIHSNVELGEF 430 (521)
Q Consensus 376 -----~~~~~~~l~~~~---~~~g~~~~A~~~~-~----------~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 430 (521)
+..--..+..-. .+...-+++...- + +. +..+|+..- .|+ ....=.++|.+
T Consensus 403 ~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge-kL~---~t~dPLe~A~k 478 (517)
T PF12569_consen 403 DNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGE-KLL---KTEDPLEEAMK 478 (517)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHH-HHh---cCCcHHHHHHH
Confidence 000001111100 1111111111110 0 00 012222211 111 22346788999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
+++-+....|++..+|......|.+.|++--|++.+.+
T Consensus 479 fl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 479 FLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 99999999999999999999999999999999988764
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=1.7e-09 Score=90.01 Aligned_cols=188 Identities=14% Similarity=0.079 Sum_probs=85.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH
Q 009967 281 LISFYAKCGSMEDSLLVFDKLTERN---IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357 (521)
Q Consensus 281 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 357 (521)
|.-.|.+.|+...|..-+++..+.| ..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|....-+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCCh
Confidence 3444555555555555555554322 1244444555555555555555555544421 11223444444444455555
Q ss_pred HHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRI 435 (521)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (521)
++|...|+++...........+|..+.-+..+.|+++.|.+.|++. ...|+ ..+.-.+.......|++-.|..++++.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 5555555554422111122234555555555555555555555442 22222 224444444445555555555555555
Q ss_pred HhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 436 LALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 436 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
....+.+...+...++.-.+.|+.+.+-++=.++
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444444444444444444555554444443333
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=3.3e-09 Score=97.88 Aligned_cols=115 Identities=12% Similarity=0.023 Sum_probs=59.5
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967 219 GRNEEAVNLFIEMLREG-LVPN--HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295 (521)
Q Consensus 219 ~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 295 (521)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+..+.+..+. +...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 44555666666655432 1121 123444444455555555555555555555433 4455555555555555555555
Q ss_pred HHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009967 296 LVFDKLTE--R-NIVTWNAVICGYAQNGRGEEAIEFFERMRI 334 (521)
Q Consensus 296 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 334 (521)
..|++..+ | +..+|..+..++...|++++|.+.+++..+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555543 2 233455555555555555555555555554
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=4.8e-09 Score=101.05 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCChhhHH-HHHHHHHhhcchHHHHHHHHHHHHc-----CCC-
Q 009967 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-----G-LVPNHSTLP-CAIIAAANIAALGMGKSFHACAVKF-----LGK- 272 (521)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~- 272 (521)
.+...+...|...|+++.|+.+++...+. | ..|...+.. .+...|...+++++|..+|+.+... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555888899999999999888887664 2 124433333 3667778888999999888888653 222
Q ss_pred C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHC---CC
Q 009967 273 L-DVFVGNSLISFYAKCGSMEDSLLVFDKLTE----------RNI-VTWNAVICGYAQNGRGEEAIEFFERMRIN---GI 337 (521)
Q Consensus 273 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~ 337 (521)
| -..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..++++..+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 234567778889999999999888887653 222 24667778889999999999999986551 12
Q ss_pred CCCH----HHHHHHHHHHHhhccHHHHHHHHHHchHhC----CC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 009967 338 RPNG----VTLLGLLWACNHTGLVEKGYSYFSQAKLED----PG-MLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP--- 404 (521)
Q Consensus 338 ~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 404 (521)
.++. .+++.+...|...|++++|+++++++.+.. +- .+. ...++.|...|.+.+++.+|.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2332 478999999999999999999999986443 21 122 3367889999999999999999887632
Q ss_pred -----CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 405 -----FDPGIG-FWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 405 -----~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
..|+.. +|..|+..|...|+++.|+++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 245544 899999999999999999999999885
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=1.5e-07 Score=89.94 Aligned_cols=382 Identities=12% Similarity=0.068 Sum_probs=222.4
Q ss_pred cCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHH
Q 009967 54 ESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130 (521)
Q Consensus 54 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 130 (521)
..|+-++|........+ .+.++|.++.-.+....++++|++.|......+ +.|...+.-+.-.-++.|+++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 45777788777765543 355778777777777788888888888887754 44555555555445667777777777
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-----CCchhHHHH------HHHHHcCCCHHHHHHHHhh
Q 009967 131 HAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-----PNVVSYTTM------ICGLLKRERFEDALKLFQE 199 (521)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~a~~~~~~ 199 (521)
..+..+.. +.....|...+.++.-.|+...|..+++...+ |+...+... .....+.|..++|.+.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 77776642 33445666777777777888888877766543 333333322 2345567777777777766
Q ss_pred CCCC--C-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChh
Q 009967 200 MPHR--N-VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVF 276 (521)
Q Consensus 200 ~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 276 (521)
-... | ...-......+.+.+++++|..+|..+.... ||..-|...+..
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~--------------------------- 261 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEK--------------------------- 261 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHH---------------------------
Confidence 6542 2 2223344566777788888888888877754 665554433322
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhhcCC--CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009967 277 VGNSLISFYAKCGSMEDSL-LVFDKLTE--RNIVTWNAV-ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 352 (521)
++.+-.+.-++. .+|....+ |....-.-+ +.......-.+....++..+.+.|+++--..+.++-.-=.
T Consensus 262 -------~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~ 334 (700)
T KOG1156|consen 262 -------ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE 334 (700)
T ss_pred -------HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh
Confidence 222111111222 33333322 000000000 0000001123344455566666666543333333321100
Q ss_pred hhccHHH-HHHHHHHchHhCC----------CCCChhHH--HHHHHHHHhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHH
Q 009967 353 HTGLVEK-GYSYFSQAKLEDP----------GMLKPEHY--ACMVDLLSRSGRFKEAKEFLYDLP-FDPGIG-FWKALLG 417 (521)
Q Consensus 353 ~~~~~~~-a~~~~~~~~~~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~ 417 (521)
+..-.++ +..+...+. ..+ -+|++..| -.++..+-+.|+++.|..+++... -.|... .|..=..
T Consensus 335 k~~~le~Lvt~y~~~L~-~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaR 413 (700)
T KOG1156|consen 335 KVAFLEKLVTSYQHSLS-GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKAR 413 (700)
T ss_pred HhHHHHHHHHHHHhhcc-cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 0001111 111221111 111 13444433 456778888999999999998753 345433 4555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
.+...|+.++|...++++.+++..|...-..-+.-..++++.++|.++.....+.|.
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 688889999999999999998876766655778888899999999999988887775
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.5e-07 Score=88.18 Aligned_cols=387 Identities=15% Similarity=0.100 Sum_probs=221.6
Q ss_pred hcccCCChhHHHHHhccC---CCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC-hhhHHHHHHHHcCCCChHH
Q 009967 51 CGSESDKFSSVHQVFDEV---PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS-EFTFGSVIPSSTALEDLNL 126 (521)
Q Consensus 51 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~ 126 (521)
+....|+++.|+..|-.. .++|.+.|+.-..+|++.|++++|++=-.+.++. .|+ .-.|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 455789999999999753 3567888999999999999999999877777664 465 4578889989999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHh------hcCCC-C------CchhHHHHHHHHH--------
Q 009967 127 GKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF------EDTHN-P------NVVSYTTMICGLL-------- 185 (521)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~------~~~~~-~------~~~~~~~li~~~~-------- 185 (521)
|+..|..-++.. +.+...++.+..++... . .+.+.| ..+.. | ....|..++..+-
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999988864 55677778888777211 0 011111 11110 1 1112222222211
Q ss_pred --cCCCHHHHHHHHhhCC----------------CC------------C----------hhHHHHHHHHHHhcCChHHHH
Q 009967 186 --KRERFEDALKLFQEMP----------------HR------------N----------VVSWNAMIGGYSQTGRNEEAV 225 (521)
Q Consensus 186 --~~g~~~~a~~~~~~~~----------------~~------------~----------~~~~~~l~~~~~~~~~~~~a~ 225 (521)
.-.++..+.-.+.... .| | ..-...+.++..+..+++.|+
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 1111222222221110 00 0 123455666777777788888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHH-------HHHHHhcCCHHHHHHHH
Q 009967 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL-------ISFYAKCGSMEDSLLVF 298 (521)
Q Consensus 226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~ 298 (521)
+-+....... -+..-++....++...|.+..+...-....+.|.. ...-|+.+ ..+|.+.++++.|+..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 8877777643 33344455556667777776666666655555443 22222222 23444555666666666
Q ss_pred hhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh
Q 009967 299 DKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP 377 (521)
Q Consensus 299 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 377 (521)
.+...+... -....+....+++........- +.|... -...-...+.+.|++..|...|.+++...+ .|.
T Consensus 322 ~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P--~Da 392 (539)
T KOG0548|consen 322 QKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP--EDA 392 (539)
T ss_pred HHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--chh
Confidence 664431110 0111222334444444443332 223332 112224445666777777777777664442 455
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 378 EHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
..|..-.-+|.+.|.+..|+.-.+.. ...|+ ...|..-..++....+++.|++.|.+.++.+|++..+...+.++...
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 66777777777777777776655542 22333 33555555556666677777777777777777666665555555544
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=6.7e-08 Score=85.17 Aligned_cols=300 Identities=10% Similarity=0.049 Sum_probs=201.4
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHH---HHHHcCCCHHHHHHHHhhCCCCChhHHHHH---HHHH
Q 009967 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMI---CGLLKRERFEDALKLFQEMPHRNVVSWNAM---IGGY 215 (521)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---~~~~ 215 (521)
++.-.--+.+.+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-|+++.+.-+..+.+- ...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 3334445556666777788888888777776666666554 356677777777777776665333333222 3456
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChh----------------hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHH
Q 009967 216 SQTGRNEEAVNLFIEMLREGLVPNHS----------------TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279 (521)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 279 (521)
.++|.+++|..-|+..+++. |+.. .....+..+...|+...+..+...+++..+- +...+.
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~ 193 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQ 193 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHH
Confidence 77888888888888877754 3221 1223344556677888888888888877654 778888
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHH---HHH
Q 009967 280 SLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT----LLG---LLW 349 (521)
Q Consensus 280 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~---ll~ 349 (521)
.-..+|...|++..|+.-++...+ .+..++..+-..+...|+.+.++...++..+ +.||... |.. +..
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHH
Confidence 888999999999999877766654 5666777777888888999999988888877 4577642 111 111
Q ss_pred ------HHHhhccHHHHHHHHHHchHhCCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHH
Q 009967 350 ------ACNHTGLVEKGYSYFSQAKLEDPGML--KPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGC 419 (521)
Q Consensus 350 ------~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~ 419 (521)
.....++|.++.+..+...+..+-.+ ....+..+-.++...|++.+|++...++ ...|+ +.++..-..+|
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 12345667777777776653333211 1224556677777888888888777763 33454 66777777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967 420 QIHSNVELGEFAARRILALDPEDVSSY 446 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~ 446 (521)
.....++.|+.-|+++.+.+++|..+-
T Consensus 352 l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 888888888888888888888766543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=3.8e-08 Score=90.90 Aligned_cols=90 Identities=16% Similarity=0.004 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009967 277 VGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACN 352 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 352 (521)
.|..+...|...|+++.|...|++..+ .+...|+.+...+...|++++|...|++..+. .|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 344444445555555555555554443 22344555555555555555555555555442 232 334444444444
Q ss_pred hhccHHHHHHHHHHch
Q 009967 353 HTGLVEKGYSYFSQAK 368 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~ 368 (521)
..|++++|.+.+++..
T Consensus 144 ~~g~~~eA~~~~~~al 159 (296)
T PRK11189 144 YGGRYELAQDDLLAFY 159 (296)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555544
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=3.5e-07 Score=79.22 Aligned_cols=404 Identities=12% Similarity=0.032 Sum_probs=194.4
Q ss_pred hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHH-HHHHHcCCCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGS-VIPSSTALED 123 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~ 123 (521)
++..+.+..++++|++++..-.+ .+....+.+...|-+..++..|.+.++.+... .|...-|.. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 44444555555555555543322 13344455555555555566666666555542 344333322 1223344555
Q ss_pred hHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHHcCCCHHHHHHHhhcCCC-CCchhHHHHHHHHHcCCCHHHHHHHHhhC
Q 009967 124 LNLGKQLHAWATKVGLQSNVF--VGSAILDLYIKLSSIEEATRVFEDTHN-PNVVSYTTMICGLLKRERFEDALKLFQEM 200 (521)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 200 (521)
+..|+++...|... ++.. ....-.......+|+..+..+.++... .+..+.+.......+.|+++.|.+-|+..
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 55555555554431 1111 111111112234555555555555552 33344444444444555555555555554
Q ss_pred CC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 009967 201 PH----RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL----PCAIIAAANIAALGMGKSFHACAVKFLGK 272 (521)
Q Consensus 201 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (521)
.+ .....||..+ +..+.|+++.|++...+..++|++..+..= .-.+.+ ...|+ -..+....
T Consensus 171 lqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh~Sa------ 239 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLHQSA------ 239 (459)
T ss_pred HhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHHHHH------
Confidence 43 1223343332 223345555555555555555543221100 000000 00000 00000000
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009967 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347 (521)
Q Consensus 273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 347 (521)
-+..+|.-...+.+.|+++.|.+.+-.|.. -|++|...+.-.- ..+++.+..+-+.-+...+ +-...||..+
T Consensus 240 -l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 240 -LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred -HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 112334444556789999999999999984 4666665554322 2345555555566566543 2345699999
Q ss_pred HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH-hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhcCCH
Q 009967 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS-RSGRFKEAKEFLYDLPFDPGIGFWKALLGGC-QIHSNV 425 (521)
Q Consensus 348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 425 (521)
+-.||+..-++.|-.++.+-....-.-.++..|+. ++++. ..-..++|.+-++.+...-....-..-+... .+..+-
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999998888653211001123334443 33333 3456677766665542100000001111111 111111
Q ss_pred ----HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 426 ----ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 426 ----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
..+++-+++.+++. -.+....++.|.+..++..+.++|..-.+..-
T Consensus 396 d~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 22333444444432 22566778889999999999999998665443
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=4.2e-08 Score=81.87 Aligned_cols=200 Identities=16% Similarity=0.097 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 009967 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285 (521)
Q Consensus 207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (521)
+...|.-.|...|++..|..-+++.++++ |+ ..++..+...|.+.|+.+.|.+.|+.+++..+. +..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~Gd--------- 104 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGD--------- 104 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccc---------
Confidence 45556677788888888888888887754 44 223333444444444444444444444444333 334
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHH
Q 009967 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYF 364 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 364 (521)
+.|.....+|..|++++|...|++......-|. ..||..+.-+..+.|+.+.|..+|
T Consensus 105 ----------------------VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 105 ----------------------VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred ----------------------hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 444444444555555555555554444221111 224444444444555555555555
Q ss_pred HHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED 442 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 442 (521)
++.....+ -.+.....+.......|++..|..+++... ..++..+.-..|..-...||.+.+.+.=.++.+..|.+
T Consensus 163 ~raL~~dp--~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 163 KRALELDP--QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHhCc--CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 55443332 112234444444455555555555554421 23344444444444445555555555555555555543
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=1.8e-07 Score=91.52 Aligned_cols=282 Identities=15% Similarity=0.099 Sum_probs=137.8
Q ss_pred HHHcCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----h--h
Q 009967 183 GLLKRERFEDALKLFQEMPH--RN-VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA----N--I 253 (521)
Q Consensus 183 ~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~--~ 253 (521)
.+...|++++|++.++.-.. .| ..........+.+.|+.++|..+|..+...+ |+...|...+..+. . .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34455555555555555433 22 2334445566666666666666666666654 55555544444333 1 1
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH-HHHHHHhhcCCCCh-hHHHHHHHHHHHcCChHHHHHHHHH
Q 009967 254 AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSME-DSLLVFDKLTERNI-VTWNAVICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~ 331 (521)
.+.+....+++.+.+.-+..+ ....+.-.+....++. .+..++..+....+ .+|+.+-..|......+-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~--~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSD--APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCcccc--chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 134444555555544432211 1111111111111121 22222333333222 3444444444433333334444444
Q ss_pred HHHC----C----------CCCCHH--HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967 332 MRIN----G----------IRPNGV--TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395 (521)
Q Consensus 332 m~~~----~----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (521)
.... + -.|... ++..+...|...|++++|.++.++.++..+ ..+..|..-.+.|.+.|++.+
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP--t~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP--TLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHCCCHHH
Confidence 3221 0 122322 334445556667777777777777663332 124566666777777777777
Q ss_pred HHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC-------chHHHHHHHHHHhcCChHHHHH
Q 009967 396 AKEFLYDLP-FD-PGIGFWKALLGGCQIHSNVELGEFAARRILALD--PED-------VSSYVMLSNALSVAGKWDNVSN 464 (521)
Q Consensus 396 A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~ 464 (521)
|.+.++... .. -|...-+..+..+.+.|++++|...+....+.+ |.. .......+.+|.+.|++..|+.
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 777776643 12 233333444455666777777777776665543 211 1122345667777777777766
Q ss_pred HHHHHH
Q 009967 465 IRREMK 470 (521)
Q Consensus 465 ~~~~m~ 470 (521)
-|..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 655543
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9.5e-07 Score=82.87 Aligned_cols=352 Identities=12% Similarity=0.039 Sum_probs=216.0
Q ss_pred hhhhcccCCChhHHHHHhccCC--CCCc-ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP--DLNV-VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
-..+|++.|++++|.+--.+-. .|+. ..|+....++.--|++++|+.-|.+-.+.. +.+...+.-+..++......
T Consensus 42 rsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~ 120 (539)
T KOG0548|consen 42 RSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAA 120 (539)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHh
Confidence 5778999999999987765544 3554 489999999999999999999999988864 44566677777766111000
Q ss_pred H---HHHHHHHHHHHhC---CCCcHHHHHHHHHH----------HHcCCCHHHHHHHhhcCC----------------CC
Q 009967 125 N---LGKQLHAWATKVG---LQSNVFVGSAILDL----------YIKLSSIEEATRVFEDTH----------------NP 172 (521)
Q Consensus 125 ~---~a~~~~~~~~~~~---~~~~~~~~~~l~~~----------~~~~g~~~~a~~~~~~~~----------------~~ 172 (521)
. .--.++....... .......|..++.. |.....+..+...+.... .|
T Consensus 121 ~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p 200 (539)
T KOG0548|consen 121 DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEP 200 (539)
T ss_pred hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCc
Confidence 0 0000111100000 00011112222221 111111222222221110 01
Q ss_pred ---------C-------------chhHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHH
Q 009967 173 ---------N-------------VVSYTTMICGLLKRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLF 228 (521)
Q Consensus 173 ---------~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 228 (521)
. ..-.-.+.++..+..+++.|++.+..... .+..-++....+|...|.+..+...-
T Consensus 201 ~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c 280 (539)
T KOG0548|consen 201 CKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELC 280 (539)
T ss_pred ccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcch
Confidence 0 01234567777788888888888887665 34555677788899999988888777
Q ss_pred HHHHHCCCCCChhhHHH-------HHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967 229 IEMLREGLVPNHSTLPC-------AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301 (521)
Q Consensus 229 ~~m~~~~~~p~~~~~~~-------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 301 (521)
....+.|- -...-|+. +..++.+.++++.+...+...+..-..|+ ...+....+++.......
T Consensus 281 ~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~ 350 (539)
T KOG0548|consen 281 EKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERK 350 (539)
T ss_pred HHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHH
Confidence 77666542 11222222 23355666788888888888665544432 233444555665555544
Q ss_pred CC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh
Q 009967 302 TE--RNI-VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE 378 (521)
Q Consensus 302 ~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (521)
.- |.. .-...-...+.+.|++..|...|.++.+.. +-|...|....-+|.+.|.+..|..-.+...+..+ +...
T Consensus 351 a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p--~~~k 427 (539)
T KOG0548|consen 351 AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP--NFIK 427 (539)
T ss_pred HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc--hHHH
Confidence 32 322 122223667889999999999999999875 44666889998899999999999998888765543 3344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHH
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWK 413 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ 413 (521)
.|..-..++....+++.|++.|++. ...|+..-+.
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 5666667777788999999999884 3455544333
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.6e-08 Score=91.93 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=112.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hhcc
Q 009967 281 LISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN----HTGL 356 (521)
Q Consensus 281 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~ 356 (521)
...++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 345566788899888888776 566677778889999999999999999998743 34 44455555543 2346
Q ss_pred HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHHH
Q 009967 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPG-IGFWKALLGGCQIHSNV-ELGEFAAR 433 (521)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~-~~A~~~~~ 433 (521)
+..|..+|+++..+. .+++.+.+.+..+....|++++|.+++.+ +...|+ +.+...++-.....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 889999999985443 37888888999999999999999998887 433443 44666666666667776 67778888
Q ss_pred HHHhcCCCCchH
Q 009967 434 RILALDPEDVSS 445 (521)
Q Consensus 434 ~~~~~~p~~~~~ 445 (521)
++....|+++.+
T Consensus 261 qL~~~~p~h~~~ 272 (290)
T PF04733_consen 261 QLKQSNPNHPLV 272 (290)
T ss_dssp HCHHHTTTSHHH
T ss_pred HHHHhCCCChHH
Confidence 888888877654
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=6.3e-07 Score=87.83 Aligned_cols=226 Identities=12% Similarity=0.039 Sum_probs=135.3
Q ss_pred hhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHC-C--------CCCChhhHHHHHHHHc
Q 009967 49 VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-N--------IRPSEFTFGSVIPSST 119 (521)
Q Consensus 49 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~--------~~p~~~~~~~ll~~~~ 119 (521)
...|..-|+.+.|.+-.+.+. +-..|..+.+.|.+.++.+-|.-.+-.|... | -.|+ .+-..+.-...
T Consensus 735 FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred eeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 456788899999977776665 3478999999999988888777666666421 1 0122 22122222235
Q ss_pred CCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC-chhHHHHHHHHHcCCCHHHHHHHHh
Q 009967 120 ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPN-VVSYTTMICGLLKRERFEDALKLFQ 198 (521)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 198 (521)
..|-+++|+.+|.+-++. ..|=..|-..|.|++|.++-+.-.... ..+|......+-..++.+.|++.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 778899999999887763 344456778899999998876544321 2356666666677888999999998
Q ss_pred hCCCC-----------------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc
Q 009967 199 EMPHR-----------------------NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255 (521)
Q Consensus 199 ~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 255 (521)
+...+ |...|.-...-.-..|+.+.|+.+|..... |-.+.+..+-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 86542 222333333333444555555555544432 2233333344455
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301 (521)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 301 (521)
.++|-++-++- | |......+.+.|-..|++.+|..+|.+.
T Consensus 954 ~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 954 TDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred chHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55554443321 1 3344444555565666666666555544
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1e-08 Score=96.51 Aligned_cols=218 Identities=17% Similarity=0.122 Sum_probs=172.6
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 009967 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIE 327 (521)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 327 (521)
.+.|++..|.-.|+..++..+. +...|.-|.......++-..|+..+.+..+ .|....-.|.-.|...|.-..|.+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4567777777788888777666 788899999999999999999999998886 345677777788999999999999
Q ss_pred HHHHHHHCCCC-----C---CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967 328 FFERMRINGIR-----P---NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399 (521)
Q Consensus 328 ~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 399 (521)
.++.-.....+ + +...-.. ..+.....+....++|-.+....+..+|+.++..|.-.|.-.|.+++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99887553210 0 0000000 122233344556666666655777778999999999999999999999999
Q ss_pred Hhh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 400 LYD-LPFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 400 ~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
|+. +.++|+ ...|+.|...++...+..+|+..|.+++++.|.-..+.+.|+-.|...|.|++|...|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 998 445665 559999999999999999999999999999999999999999999999999999999887654
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.03 E-value=1.5e-06 Score=83.27 Aligned_cols=388 Identities=11% Similarity=0.092 Sum_probs=236.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc
Q 009967 76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155 (521)
Q Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (521)
|..++..| ..+++...++..+.+.+. .+-...|.....-.+...|+.++|........+.. ..+...|..+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 34444433 345677777777777663 33334444433334566788888888777766643 4456677777777777
Q ss_pred CCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 009967 156 LSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFI 229 (521)
Q Consensus 156 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 229 (521)
..++++|++.|..... .|...|.-+.-.-++.|+++..........+ .....|..++.++.-.|++..|..+++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999988887764 4555666666666677777777766666554 345678888888888999999999998
Q ss_pred HHHHCC-CCCChhhHHHHHH------HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 009967 230 EMLREG-LVPNHSTLPCAII------AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT 302 (521)
Q Consensus 230 ~m~~~~-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 302 (521)
+..+.. ..|+...+..... .....|..+.|.+.+..-...-+. ....-..-...+.+.+++++|..++..+.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 887754 3466665554332 234556666665555443322111 22222344567788899999999999888
Q ss_pred C--CChhHHHHH-HHHHHH-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc-HHHHHHHHHHchHhCCCCCCh
Q 009967 303 E--RNIVTWNAV-ICGYAQ-NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL-VEKGYSYFSQAKLEDPGMLKP 377 (521)
Q Consensus 303 ~--~~~~~~~~l-i~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 377 (521)
. ||-.-|... ..++.+ .+..+....+|....+. .|....-..+--......+ .+....++.... +.|+++
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p~-- 321 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVPS-- 321 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCCc--
Confidence 6 444444443 444432 33333333666665542 2222211111111111122 233344444443 444332
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHh----hCC-------------CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 378 EHYACMVDLLSRSGRFKEAKEFLY----DLP-------------FDPGIGFWKA--LLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~----~~~-------------~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
++..+...|-.-...+-..++.. .+. .+|....|.. ++..+-..|+++.|...++.+++.
T Consensus 322 -vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 322 -VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred -hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 34444444433222221112211 111 1556555554 555688899999999999999999
Q ss_pred CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 439 DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 439 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
.|.-+..|..-++.+..+|..++|...+++..+..
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 99889999999999999999999999999976554
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=7.1e-09 Score=94.25 Aligned_cols=191 Identities=13% Similarity=0.074 Sum_probs=134.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 009967 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLT-ER----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346 (521)
Q Consensus 272 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 346 (521)
.|.......+...+...++-+.+..-++... ++ +..........+...|++++|+++++.- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 4455555555554444455666666665544 32 2222222334566789999999988742 45667777
Q ss_pred HHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH----HHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHH
Q 009967 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD----LLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQ 420 (521)
Q Consensus 347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 420 (521)
.+..+.+.++++.|.+.++.|. +.. .|. +...+.. .+.-.+.+.+|..+|+++. ..+++.+.+.++.++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~-~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQ-QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH-CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 8889999999999999999996 332 333 3333333 3333457999999999974 3577888899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 009967 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW-DNVSNIRREMKEK 472 (521)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 472 (521)
..|++++|.+++.++++.+|+++.++..++.+....|+. +.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998 6678888887654
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=8.1e-07 Score=78.83 Aligned_cols=381 Identities=13% Similarity=0.094 Sum_probs=243.4
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH
Q 009967 80 IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159 (521)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 159 (521)
+.-+..+.++..|+.+++.-...+-.-...+-..+..++...|++++|...+.-+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 67778889999999999876643322222222334445679999999999999888754 67777777788888888999
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 009967 160 EEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239 (521)
Q Consensus 160 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (521)
.+|..+-.+..+ ++..-..|.+.-.+.++-++-..+-+.+.+ ...---++.+.....-.+++|+++|+..+..+ |+
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~e 183 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PE 183 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hh
Confidence 999998877743 222333445555667776666665555554 22334455555555667999999999998865 66
Q ss_pred hhhHHHHHH-HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHH--HHHhhc-------------
Q 009967 240 HSTLPCAII-AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC--GSMEDSL--LVFDKL------------- 301 (521)
Q Consensus 240 ~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~--~~~~~~------------- 301 (521)
....+..+. +|.+..-++.+.++++--++.-+. ++...|..+....+. |+..+++ .+-+..
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 666665544 456677778888888877765443 333334333322221 2211111 111111
Q ss_pred ------------------CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhhccHH
Q 009967 302 ------------------TERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-----NHTGLVE 358 (521)
Q Consensus 302 ------------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~ 358 (521)
.+.=+..--.++--|.++++..+|..+.+++.- ..|-......++.+- .......
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 111112233345557889999999999887542 234444444444332 1222355
Q ss_pred HHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967 359 KGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRI 435 (521)
Q Consensus 359 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (521)
-|.+.|+.+- ..+..- +..--..+..++.-..++++.+.+++.++ +..|...--.+..+....|++.+|+++|-++
T Consensus 341 iAqqffqlVG-~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVG-ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 6777777663 333322 22234455666666678999999988876 2334444445888999999999999999988
Q ss_pred HhcCCCCchHH-HHHHHHHHhcCChHHHHHHHHHH
Q 009967 436 LALDPEDVSSY-VMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 436 ~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
...+-.|..+| ..|+++|.+.|+.+-|+.++-++
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 77664455555 45799999999999999887664
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=1.6e-06 Score=83.06 Aligned_cols=197 Identities=11% Similarity=-0.046 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHH
Q 009967 277 VGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGI-RPNG--VTLLGLLWA 350 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~ 350 (521)
....+...+...|++++|.+.+++..+ .+...+..+...+...|++++|..++++.....- .|+. ..+..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 334455667777777777777777764 3345666677777777888888887777665321 1222 234456666
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HhhC-CCCCC---HHHHHHHHHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-A--CMVDLLSRSGRFKEAKEF---LYDL-PFDPG---IGFWKALLGGCQ 420 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~~~---~~~~~~l~~~~~ 420 (521)
+...|++++|..+++++....+..+..... + .++..+...|....+.+. .... ...|. .........++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 777788888888887764222211111111 1 222333333432222222 1111 10011 112224455577
Q ss_pred hcCCHHHHHHHHHHHHhcCCC---------CchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 421 IHSNVELGEFAARRILALDPE---------DVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
..|+.+.|..+++.+....-. ........+.++...|++++|.+.+......+
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788888888888887662211 34455566777889999999999999877654
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=3e-06 Score=82.31 Aligned_cols=376 Identities=13% Similarity=0.100 Sum_probs=222.3
Q ss_pred hhhhcccCCChhHHHHHhcc--CCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967 48 SVSCGSESDKFSSVHQVFDE--VPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 125 (521)
-++.|.+.|.+.+|.+.... ....|......+..++.+..-+++|-++|+++.. |+ -.+..+.+..-+-
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~d-----kale~fkkgdaf~ 691 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGDAFG 691 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHcccHHH
Confidence 45666666666665554321 1123444444555555555555555555555432 11 1122222222233
Q ss_pred HHHHHHHHHHHhCCCCcHHHH-HHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCC
Q 009967 126 LGKQLHAWATKVGLQSNVFVG-SAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN 204 (521)
Q Consensus 126 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 204 (521)
+|.++-.. .++..+.+. ......+...|+++.|..-|-+.. ....-+.+......+.+|+.+++.+.+.+
T Consensus 692 kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk 762 (1636)
T KOG3616|consen 692 KAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK 762 (1636)
T ss_pred HHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc
Confidence 33332221 112111111 122233344566666665554332 12223445566778888888888887654
Q ss_pred hh--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967 205 VV--SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282 (521)
Q Consensus 205 ~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (521)
+. -|..+...|+..|+++.|.++|.+.- .+.-.|..|.+.|.+..|.++-.+.. |+......|.+-.
T Consensus 763 ~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiaka 831 (1636)
T KOG3616|consen 763 TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKA 831 (1636)
T ss_pred cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhH
Confidence 43 47778888999999999988886532 35567788889999988887765543 4444566676667
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362 (521)
Q Consensus 283 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 362 (521)
.-.-+.|++.+|+++|-.+.+|+. .|+.|-+.|..+..+++..+-... .-..|-..+..-+...|++..|+.
T Consensus 832 edldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 832 EDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred HhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHH
Confidence 777888999999999998888875 477888889988888887753221 112355666677788888888887
Q ss_pred HHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH-----HHH-------------------HHHHH
Q 009967 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIG-----FWK-------------------ALLGG 418 (521)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~-------------------~l~~~ 418 (521)
-|-+.. -|.+-+.+|...+.|++|-++-+.-. ..+.. .|. .-+..
T Consensus 904 ~flea~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~ 972 (1636)
T KOG3616|consen 904 HFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDF 972 (1636)
T ss_pred HHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhh
Confidence 775542 15566677777777777777655422 11111 111 11111
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
.+..+-++-|.++.+-... ...+.+...++..+...|++++|-+-+-+..+.+
T Consensus 973 a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 973 AADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 2334455555555443332 1245566778888889999999988777766654
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.9e-05 Score=75.15 Aligned_cols=408 Identities=13% Similarity=0.053 Sum_probs=221.6
Q ss_pred hhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967 49 VSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125 (521)
Q Consensus 49 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 125 (521)
+..+...|++++|.+...++.. | +...+..=+-++.+.++|++|+.+.+.-.. ...+...+..=..+..+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHH
Confidence 5566677777777777766542 2 344555556667777777777755443211 0111111111122334677777
Q ss_pred HHHHHHHHHHHhCCCC-cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHH-HHcCCCHHHHHHHHhhCCC-
Q 009967 126 LGKQLHAWATKVGLQS-NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICG-LLKRERFEDALKLFQEMPH- 202 (521)
Q Consensus 126 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~- 202 (521)
+|...++ |..+ +..+...-...+.+.|++++|..+|+.+.+.+...+...+.+ +...+-.-.+. +.+....
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEV 170 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCC
Confidence 7777766 2232 233555556667777888888888877766444444433322 11111111121 2333332
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------CCCChh-------hHHHHHHHHHhhcchHHHHHHHHHH
Q 009967 203 --RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-------LVPNHS-------TLPCAIIAAANIAALGMGKSFHACA 266 (521)
Q Consensus 203 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~ 266 (521)
.+...+......+...|++.+|+++++...+.+ -.-+.. .-..+...+-..|+..+|..++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 233334444566777889999999888873321 111111 1223445567788888888888888
Q ss_pred HHcCCCCChh----HHHHHHHHHHhcCCH-H-HHHHHHhhcCCCCh--------------h-HHHHHHHHHHHcCChHHH
Q 009967 267 VKFLGKLDVF----VGNSLISFYAKCGSM-E-DSLLVFDKLTERNI--------------V-TWNAVICGYAQNGRGEEA 325 (521)
Q Consensus 267 ~~~~~~~~~~----~~~~l~~~~~~~g~~-~-~A~~~~~~~~~~~~--------------~-~~~~li~~~~~~~~~~~A 325 (521)
++.... |.. ..|.|+.+ ....++ + .++..++....... . .-+.++..|. +.-+.+
T Consensus 251 i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~ 326 (652)
T KOG2376|consen 251 IKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQV 326 (652)
T ss_pred HHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 887654 322 12222221 111111 1 22223332221111 1 1122222222 223333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH--hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHh--
Q 009967 326 IEFFERMRINGIRPNGVTLLGLLWACN--HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY-- 401 (521)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-- 401 (521)
.++-... .+..|.. .+..++..+. +......+..++......++. -...+....+......|+++.|.+++.
T Consensus 327 r~~~a~l--p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~-~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 327 RELSASL--PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPE-KSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHhC--CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc-hhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333321 1223433 3444444432 222467788888776433321 124456677888899999999999998
Q ss_pred ------hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C---CCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967 402 ------DLP-FDPGIGFWKALLGGCQIHSNVELGEFAARRILAL----D---PEDVSSYVMLSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 402 ------~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (521)
.+. ..-.+.+...+...+.+.++.+.|..++.+++.- . +....++..++..-.+.|+-++|...++
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 332 2233445555666678888888899998888762 2 2233456667777778899999999999
Q ss_pred HHHhC
Q 009967 468 EMKEK 472 (521)
Q Consensus 468 ~m~~~ 472 (521)
++.+.
T Consensus 483 el~k~ 487 (652)
T KOG2376|consen 483 ELVKF 487 (652)
T ss_pred HHHHh
Confidence 99874
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=1.7e-06 Score=82.90 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=96.6
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C---Ch--hHHHHHHHHHHHcCC
Q 009967 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R---NI--VTWNAVICGYAQNGR 321 (521)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~li~~~~~~~~ 321 (521)
.+...|+++.|...++...+..+. +...+..+..++...|++++|...+++..+ | +. ..|..+...+...|+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 334444444444444444444322 455566666777777777777777776654 1 11 234456677777788
Q ss_pred hHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhhccHHHHHHH---HHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967 322 GEEAIEFFERMRINGI-RPNGVTL-L--GLLWACNHTGLVEKGYSY---FSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394 (521)
Q Consensus 322 ~~~A~~~~~~m~~~~~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (521)
+++|..++++...... .+..... . .++..+...|..+.+.+. ......................++...|+.+
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence 8888888877654321 1111111 1 222222233322222221 1111101010111122234566677888888
Q ss_pred HHHHHHhhCCC--CC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 395 EAKEFLYDLPF--DP---G------IGFWKALLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 395 ~A~~~~~~~~~--~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
.|...++.+.. .. . +...-....++...|+.++|.+.+.+++..
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888876531 11 1 111222233467889999999999888764
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=4.5e-06 Score=81.73 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (521)
.|......+.+.++.++|...+.+..... +-....|......+...|.+++|.+.|.....-.| .++.+..++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP--~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP--DHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC--CCcHHHHHHHHHH
Confidence 35556677788899999998888877642 23444666666778889999999999988764444 3456789999999
Q ss_pred HhcCCHHHHHH--HHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967 388 SRSGRFKEAKE--FLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444 (521)
Q Consensus 388 ~~~g~~~~A~~--~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 444 (521)
.+.|+..-|.. ++..+ ..+| +...|..+...+.+.|+.+.|.+.|.-+.++.+.+|.
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99998777776 76664 4455 5779999999999999999999999999998876653
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=3.7e-06 Score=81.67 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=93.3
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHH
Q 009967 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEA 325 (521)
Q Consensus 246 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 325 (521)
.+.+......+.+|..+++.+...+.. ..-|..+.+.|...|+++.|+++|-+.- .++-.|..|.+.|+|+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 344455556666666666666554332 2334556666777777777777766542 344556667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 009967 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405 (521)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 405 (521)
.++-.+.. |.......|..-..-....|++.+|+++|-.+ + .|+. -+.+|-+.|..++.+++.++---
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 76655433 21122233333333355666666666665433 1 1332 35566667777777666665421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967 406 DPGIGFWKALLGGCQIHSNVELGEFAARRI 435 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (521)
.--..+...+..-+-..|+.+.|...|-++
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 111224444555556666666666655544
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=4.4e-06 Score=90.75 Aligned_cols=323 Identities=10% Similarity=-0.020 Sum_probs=210.0
Q ss_pred HHHHcCCCHHHHHHHhhcCCC----CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC----C----C----hhHHHHHHHH
Q 009967 151 DLYIKLSSIEEATRVFEDTHN----PNVVSYTTMICGLLKRERFEDALKLFQEMPH----R----N----VVSWNAMIGG 214 (521)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~----~----~~~~~~l~~~ 214 (521)
......|+++.+..+++.+.. .+..........+...|+++++...+..... . + ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344557788888888777642 2233333445556678999998888876432 1 1 1122233455
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-----CChhHHHHHHHHH
Q 009967 215 YSQTGRNEEAVNLFIEMLREGLVPNH----STLPCAIIAAANIAALGMGKSFHACAVKFLGK-----LDVFVGNSLISFY 285 (521)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~ 285 (521)
+...|++++|...+++....-...+. .....+...+...|+++.|...+......... ........+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999988763111121 23344555667899999999998887653221 1123455667778
Q ss_pred HhcCCHHHHHHHHhhcCC-------CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 009967 286 AKCGSMEDSLLVFDKLTE-------RN----IVTWNAVICGYAQNGRGEEAIEFFERMRIN--GIRPN--GVTLLGLLWA 350 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~--~~~~~~ll~~ 350 (521)
...|+++.|...+++..+ ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 899999999998887653 11 123445566677789999999999887552 11122 2244445566
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHhhCCCC--CCHH----HHHHHHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHY-----ACMVDLLSRSGRFKEAKEFLYDLPFD--PGIG----FWKALLGGC 419 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~ 419 (521)
....|+.+.|...++.+............+ ...+..+...|+.+.|.+.+...... .... .+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999988874321111111111 11224455689999999998775421 1111 134566678
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 420 QIHSNVELGEFAARRILALD------PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
...|++++|...++++.... +....++..++.++.+.|+.++|...+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999988742 1134567788999999999999999999987654
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=2.5e-07 Score=95.61 Aligned_cols=233 Identities=13% Similarity=0.106 Sum_probs=186.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--------RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 345 (521)
+...|-..|..+.+.++.++|+++++++.. .-...|.+++..-..-|.-+...++|+++.+.- -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 556677888889999999999999998874 123478888888888888899999999998742 2234678
Q ss_pred HHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCC---CHHHHHHHHHHHHh
Q 009967 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDP---GIGFWKALLGGCQI 421 (521)
Q Consensus 346 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~---~~~~~~~l~~~~~~ 421 (521)
.|...|.+.+.+++|.++++.|.++.+ -...+|..++..+.+.++-+.|..++.+ +..-| ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 888999999999999999999998887 5667899999999999999999999987 33333 34455566666788
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCC
Q 009967 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHM 501 (521)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (521)
.||.+++..+|+..+...|.....|+.+++.-.+.|+.+.++.+|++....++++...-.+ ...|..-.++|.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKff------fKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFF------FKKWLEYEKSHGD 1686 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHH------HHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999998876443111 1122233367777
Q ss_pred cHHHHHHHHHHHHHH
Q 009967 502 NDEIYAVLRSCTEQI 516 (521)
Q Consensus 502 ~~~i~~~l~~~~~~~ 516 (521)
.+.+..+-++-.+-+
T Consensus 1687 e~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1687 EKNVEYVKARAKEYV 1701 (1710)
T ss_pred hhhHHHHHHHHHHHH
Confidence 777777766665544
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.1e-06 Score=76.20 Aligned_cols=304 Identities=12% Similarity=0.079 Sum_probs=158.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhHHHH-HHHHHHhc
Q 009967 145 VGSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRERFEDALKLFQEMPH--RNVVSWNA-MIGGYSQT 218 (521)
Q Consensus 145 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~~~ 218 (521)
-+++++..+.+..+++.|++++..-.+ | +......+..+|....++..|-..++++.. |...-|.. -...+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 345555556677777777777765544 2 344556666777777777777777777665 33333322 23455566
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 009967 219 GRNEEAVNLFIEMLREGLVPNHSTLPCAII--AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296 (521)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 296 (521)
+.+..|+++...|... |+...-..-+. ...+.+++-.+..+.++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6777777776666442 21111111111 1123344444544444433221 33333333334445566666666
Q ss_pred HHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhhccHHHHHHHHHHch
Q 009967 297 VFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVT----LLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 297 ~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
-|+...+ .....||.-+ +..+.|+++.|+++..++.++|++..... ..-.+.+ ...|+. ..+....
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~Sa- 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQSA- 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHHH-
Confidence 6655554 2223444333 23344555666666666555554321110 0000000 000000 0000000
Q ss_pred HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP----FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444 (521)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 444 (521)
-...+|.-...+.+.|+++.|.+.+.+|+ .+.|+.+...+.-.- ..+++.+..+-+.-+++++|-.+.
T Consensus 240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH
Confidence 00123333344567888888888888886 234556655554332 235666677777777778887778
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 009967 445 SYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
++..+.-.|++..-++-|..++-+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888888888888888888777765
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=3.9e-07 Score=81.65 Aligned_cols=180 Identities=11% Similarity=-0.024 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-I---VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV----T 343 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~ 343 (521)
....+..+...+.+.|+++.|...|+++.+ |+ . .++..+..++...|++++|...++++.+.. |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 455667777788888888888888887764 32 1 356777788888888888888888887643 3221 3
Q ss_pred HHHHHHHHHhh--------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 009967 344 LLGLLWACNHT--------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKAL 415 (521)
Q Consensus 344 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 415 (521)
+..+..++... |+.+.|.+.++.+....+-. ...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS--EYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC--hhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 44455555543 67888888888887554322 222222211111 00000 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 416 LGGCQIHSNVELGEFAARRILALDPED---VSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
...+...|++++|+..++++++..|++ +..+..++.++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566889999999999999999987764 478999999999999999999999988764
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=4.7e-05 Score=76.89 Aligned_cols=275 Identities=14% Similarity=0.117 Sum_probs=165.7
Q ss_pred CCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 009967 157 SSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL 236 (521)
Q Consensus 157 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 236 (521)
+.+++|.+.-++..+ +..|..+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.+++-.+++.-.++..-
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 444444444444433 3456777777777777777777665544 455667777777777777777777665555443
Q ss_pred CCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHH
Q 009967 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY 316 (521)
Q Consensus 237 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 316 (521)
.|.. =+.++-+|++.+++.+.+.+.. -|+......+.+-|...|.++.|.-+|.. +..|..|...+
T Consensus 1165 E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTL 1230 (1666)
T ss_pred Cccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHH
Confidence 3332 2456667777776655544432 44555566666666666777776666653 45677777788
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC--CCChhHHHHHHHHHHhcCCHH
Q 009967 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG--MLKPEHYACMVDLLSRSGRFK 394 (521)
Q Consensus 317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 394 (521)
...|++..|...-++. .+..||..+-.+|...+.+..|. -+|+ .....-...|+..|...|.++
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ--------iCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ--------ICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH--------hcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 8888888877655432 35567887777787766554331 2332 234445677888888888888
Q ss_pred HHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-C------CCchHHHHHHHHHHhcCChHHHHH
Q 009967 395 EAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILAL-D-P------EDVSSYVMLSNALSVAGKWDNVSN 464 (521)
Q Consensus 395 ~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p------~~~~~~~~l~~~~~~~g~~~~A~~ 464 (521)
+.+.+++.. .. +.....|+.|...|.+- ++++.++.++-.... + | +....|..+.-.|.+-..||.|.-
T Consensus 1297 ElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 888888763 22 33344566666555543 444444444443331 1 1 134456666666666666665543
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=8.9e-05 Score=73.37 Aligned_cols=203 Identities=10% Similarity=0.001 Sum_probs=131.7
Q ss_pred hhhccccCCCCccchHHHHHHHh--hcCCCchh-hhhhcccCCChhHHHHHhccCCC-------------CCcccHHHHH
Q 009967 17 LSKLHSLAPNYLIETQKASVQKL--ETPAIRTD-SVSCGSESDKFSSVHQVFDEVPD-------------LNVVSATTII 80 (521)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~l~ 80 (521)
.++++...+-+-++++.++..+. ++. .-++ ++++|.+..+.+-|.-.+..|.. ++ ..-..+.
T Consensus 730 kaml~FSfyvtiG~MD~AfksI~~IkS~-~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvA 807 (1416)
T KOG3617|consen 730 KAMLDFSFYVTIGSMDAAFKSIQFIKSD-SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVA 807 (1416)
T ss_pred HhhhceeEEEEeccHHHHHHHHHHHhhh-HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHH
Confidence 34455444444555555554443 222 2333 99999999999888888776642 22 2222333
Q ss_pred HHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHH
Q 009967 81 GRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160 (521)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 160 (521)
-.-..-|..++|..+|++.++. ..+=+.|-..|.+++|.++-+.--+. .=..||..-..-+-..+|++
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHH
Confidence 3345668899999999998763 33444566788999998876643321 12345555566666778888
Q ss_pred HHHHHhhcCCC-----------------------CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---------------
Q 009967 161 EATRVFEDTHN-----------------------PNVVSYTTMICGLLKRERFEDALKLFQEMPH--------------- 202 (521)
Q Consensus 161 ~a~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------------- 202 (521)
.|++.|++... .|...|.-....+-..|+.+.|+.+|....+
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence 88888877643 2334444455555667888888888876542
Q ss_pred ---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967 203 ---------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233 (521)
Q Consensus 203 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 233 (521)
.|..+...+.+.|-..|++.+|..+|.+.+.
T Consensus 956 kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 956 KAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3556777888888888888888888877643
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=6e-07 Score=77.14 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=110.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC
Q 009967 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392 (521)
Q Consensus 313 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (521)
+..|...|+++.+....+.+.. |. ..+...++.+++...++......+ .+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCC
Confidence 3456777777776444332221 11 012235666777777777765555 677789999999999999
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967 393 FKEAKEFLYDL-PFDP-GIGFWKALLGGC-QIHSN--VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 393 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (521)
+++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999874 2344 566777777764 66676 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 009967 468 EMKEKGM 474 (521)
Q Consensus 468 ~m~~~g~ 474 (521)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9887643
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.4e-05 Score=77.83 Aligned_cols=238 Identities=14% Similarity=0.039 Sum_probs=181.5
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHH
Q 009967 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267 (521)
Q Consensus 188 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 267 (521)
+.++.|.++-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.++...+++..+.
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44455555554444 4567999999999999999998877443 467789999999999999999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009967 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347 (521)
Q Consensus 268 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 347 (521)
+...+|.+. ..|+-+|++.++..+.++++ ..||.........-|...|.++.|.-+|.. ..-|..|
T Consensus 1161 kk~~E~~id--~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~L 1226 (1666)
T KOG0985|consen 1161 KKVREPYID--SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKL 1226 (1666)
T ss_pred HhhcCccch--HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHH
Confidence 887776554 56888999999988776654 357888888888889999999888877763 3446677
Q ss_pred HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009967 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427 (521)
Q Consensus 348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 427 (521)
...+...|+++.|...-+++ .+..+|..+..+|...+.+.-|.-. -+.+--...-...|+.-|...|-+++
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHH
Confidence 77788889998888877665 3667898888888877766544321 11112233456678889999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967 428 GEFAARRILALDPEDVSSYVMLSNALSVA 456 (521)
Q Consensus 428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 456 (521)
-+.+++..+.+...+...|..|+-.|.+-
T Consensus 1298 lIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 99999999998888888888888777764
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=3.1e-05 Score=68.79 Aligned_cols=307 Identities=10% Similarity=-0.011 Sum_probs=170.9
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHH-HHHHHHH
Q 009967 75 SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVG-SAILDLY 153 (521)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~ 153 (521)
----+...+..+|++..|+.-|....+.+ +.+-.++-.-...|...|+..-|+.=+...++ .+||...- -.-...+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 33456667777788888888888776532 11222333333457777888888877777776 46765432 2233466
Q ss_pred HcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 154 IKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEM 231 (521)
Q Consensus 154 ~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 231 (521)
.++|.++.|..-|+.+.+ |+..+-. .++.+.-..++ .......+..+...|+...|+.....+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e------------~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQE------------HWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHH------------HHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 788888888888877765 2211100 00000000000 011112233344445555555555555
Q ss_pred HHCCCCC-ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--h-
Q 009967 232 LREGLVP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI--V- 307 (521)
Q Consensus 232 ~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~- 307 (521)
++. .| |...+..-..+|...|++..|..=+..+.+.... +...+.-+...+...|+.+.++...++..+-|+ .
T Consensus 182 lEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 182 LEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred Hhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 442 23 2233333444555555555554444444443333 333444455555566666666665555554222 1
Q ss_pred ---HHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967 308 ---TWNAV---------ICGYAQNGRGEEAIEFFERMRINGIRPNGV---TLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372 (521)
Q Consensus 308 ---~~~~l---------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 372 (521)
.|..+ +......++|.++.+..+...+........ .+..+-.++...+++.+|++.-.++....+
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 11111 122345678888888888877654221222 344455566778899999999888863332
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404 (521)
Q Consensus 373 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 404 (521)
.|..++.--..+|.-...++.|+.-|+...
T Consensus 339 --~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 339 --DDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred --hHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 347788888899999999999999998854
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=4.2e-07 Score=88.20 Aligned_cols=218 Identities=8% Similarity=-0.027 Sum_probs=165.1
Q ss_pred CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHH
Q 009967 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICG 315 (521)
Q Consensus 238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 315 (521)
|-...-..+...+.+.|-...|..+++. ...+...+.+|...|+..+|..+..+..+ |++..|..+.+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Er---------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFER---------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHh---------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 3333344556667777777888877774 45567788888999988888888777664 677788888777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395 (521)
Q Consensus 316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (521)
.....-+++|.++.+..... +-..+.......++++++.+.|+.-.+.++ ....+|-.+.-+..+.+++..
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np--lq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP--LQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc--cchhHHHhccHHHHHHhhhHH
Confidence 77777788888887764321 112222223346888999998888765555 345568888888889999999
Q ss_pred HHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 396 AKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 396 A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
|.+.|.. ....||.. .|+.+..+|.+.|+-.+|...++++...+..+..+|..........|.+++|.+.+.++.+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9988876 44566644 899999999999999999999999999888888999999999999999999999999886543
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.76 E-value=0.00021 Score=67.67 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCC-HHHHHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPG-IGFWKALLGGC 419 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~ 419 (521)
+|..++....+..-+..|+.+|.++. +.+..+ ++.++++++..|+ .++..-|.++|+- ++.-+| +......+..+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR-~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAR-EDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHh-hccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34444444444445555555555554 222222 4444455554443 3445555555543 221222 22333344444
Q ss_pred HhcCCHHHHHHHHHHHHhc--CCC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 420 QIHSNVELGEFAARRILAL--DPE-DVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
...++-..+..+|++.+.. .|+ ...+|..++..-+.-|+...++++-+++
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4555555555555555553 221 3345555555555555555555554444
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.71 E-value=2.2e-05 Score=79.08 Aligned_cols=417 Identities=14% Similarity=0.070 Sum_probs=234.8
Q ss_pred hhhhcccCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhh--HHHHHHHHcCCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP---DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT--FGSVIPSSTALE 122 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~ 122 (521)
|-+.|....+...|.+.|++.- ..+...+....+.|++..+++.|..+.-..-+.. +.-... |...--.+...+
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~ 576 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAH 576 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCcc
Confidence 5556666667778888887643 4466778888888888888888888733222211 111112 222222356777
Q ss_pred ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchh-HHHH--HHHHHcCCCHHHHHHHHhh
Q 009967 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS-YTTM--ICGLLKRERFEDALKLFQE 199 (521)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l--i~~~~~~g~~~~a~~~~~~ 199 (521)
+...++.-|+...+.. +.|...|..++.+|.++|.+..|.++|.+...-++.. |... ....+..|.+++|...+..
T Consensus 577 n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred chhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8888888888877754 5577888889999999999999999998776633322 2222 2234556788888877776
Q ss_pred CCC----------CChhHHHHHHHHHHhcCChHH-------HHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchH--HH-
Q 009967 200 MPH----------RNVVSWNAMIGGYSQTGRNEE-------AVNLFIEMLREGLVPNHSTLPCAIIAAANIAALG--MG- 259 (521)
Q Consensus 200 ~~~----------~~~~~~~~l~~~~~~~~~~~~-------a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a- 259 (521)
+.. .-..++-.+...+...|-..+ +++.|.-...+....+...+..+-.+|.-.-..+ ..
T Consensus 656 ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn 735 (1238)
T KOG1127|consen 656 IIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVN 735 (1238)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchH
Confidence 543 112233333333332332222 2222222222211111111211111111100000 00
Q ss_pred ---HHH-HHHHHHcCC--------------------CCChhHHHHHHHHHHh----c----CCHHHHHHHHhhcCC---C
Q 009967 260 ---KSF-HACAVKFLG--------------------KLDVFVGNSLISFYAK----C----GSMEDSLLVFDKLTE---R 304 (521)
Q Consensus 260 ---~~~-~~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----g~~~~A~~~~~~~~~---~ 304 (521)
..+ +.+....+. ..+...|..++..|.+ . .+...|...+....+ .
T Consensus 736 ~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an 815 (1238)
T KOG1127|consen 736 MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN 815 (1238)
T ss_pred HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc
Confidence 000 001111111 1123333334333322 1 233466677766654 5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384 (521)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 384 (521)
+..+|+.|.-. ...|++.-|...|-.-.... +-...+|..+.-.+....+++.|...|...+.-.+ .+...|....
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP--~nl~~WlG~A 891 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP--LNLVQWLGEA 891 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCc--hhhHHHHHHH
Confidence 66677776554 55566766666665544432 23445777777778888899999999998763333 3444566656
Q ss_pred HHHHhcCCHHHHHHHHhh-----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH----------HHHHhcCCCCchHHH
Q 009967 385 DLLSRSGRFKEAKEFLYD-----LP--FDPGIGFWKALLGGCQIHSNVELGEFAA----------RRILALDPEDVSSYV 447 (521)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~-----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~----------~~~~~~~p~~~~~~~ 447 (521)
......|+.-++..+|.. +. .-|+...|-........+|+.++-+... ++.....|+...+|.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 666678888888888765 11 1344445544444556666666554444 444456788888999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 009967 448 MLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
..+...-+.+.+.+|.+...+..
T Consensus 972 ~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888777653
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=6e-07 Score=72.93 Aligned_cols=108 Identities=12% Similarity=-0.029 Sum_probs=67.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhc
Q 009967 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIH 422 (521)
Q Consensus 345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~ 422 (521)
..+..++...|++++|...|+.+....+ .+...|..+..++.+.|++++|...|++.. . +.+...+..+..++...
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3445556666777777777766653333 345566666666667777777777666632 2 33455666666666777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 423 SNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
|++++|+..|+++++..|+++..+...+.++.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777777766666655543
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.00013 Score=79.30 Aligned_cols=323 Identities=12% Similarity=-0.008 Sum_probs=203.3
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCch--hHHHHHHHHHcCCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHH
Q 009967 150 LDLYIKLSSIEEATRVFEDTHNPNVV--SYTTMICGLLKRERFEDALKLFQEMPH----RNVVSWNAMIGGYSQTGRNEE 223 (521)
Q Consensus 150 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 223 (521)
...+...|++.+|............. ............|+++.+..+++.+.. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34455566666666555554432111 111222345567888888888887742 233334455566678899999
Q ss_pred HHHHHHHHHHCC--C----CCCh--hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCH
Q 009967 224 AVNLFIEMLREG--L----VPNH--STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV----FVGNSLISFYAKCGSM 291 (521)
Q Consensus 224 a~~~~~~m~~~~--~----~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 291 (521)
+...+......- . .+.. .........+...|+++.+...++.........+. ...+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 999998875531 1 1111 11122234456789999999999988764222222 2345566777889999
Q ss_pred HHHHHHHhhcCC-------CC--hhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhhc
Q 009967 292 EDSLLVFDKLTE-------RN--IVTWNAVICGYAQNGRGEEAIEFFERMRI----NGIR--P-NGVTLLGLLWACNHTG 355 (521)
Q Consensus 292 ~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~--p-~~~~~~~ll~~~~~~~ 355 (521)
+.|...+.+... +. ..++..+...+...|++++|...+++... .+.. | ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999988763 11 23455667778899999999999888655 2211 1 1233445555677789
Q ss_pred cHHHHHHHHHHchHhCC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHH-----HHHHHHHhcC
Q 009967 356 LVEKGYSYFSQAKLEDP-GML--KPEHYACMVDLLSRSGRFKEAKEFLYDLP----FDPGIGFWK-----ALLGGCQIHS 423 (521)
Q Consensus 356 ~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~-----~l~~~~~~~g 423 (521)
++++|...+++...... ..+ ....+..+...+...|++++|.+.+++.. .......+. ..+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999999888753211 112 23345557778889999999998887642 111111111 1123345679
Q ss_pred CHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 424 NVELGEFAARRILALDPEDVS----SYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 424 ~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+.+.|...+.......+.... .+..++.++...|++++|...+++....
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998776653322222 2457888899999999999999987654
No 111
>PLN02789 farnesyltranstransferase
Probab=98.67 E-value=8.9e-06 Score=75.16 Aligned_cols=223 Identities=17% Similarity=0.162 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 009967 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287 (521)
Q Consensus 208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (521)
+..+-..+...+..++|+.++.++... .|+.. .+|+.-..++..
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~y----------------------------------taW~~R~~iL~~ 83 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNY----------------------------------TVWHFRRLCLEA 83 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhH----------------------------------HHHHHHHHHHHH
Confidence 334444455666777777777777763 35432 223333333333
Q ss_pred cC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967 288 CG-SMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRG--EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361 (521)
Q Consensus 288 ~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 361 (521)
.| ++++++..++++.+ .+..+|+.....+.+.|+. +++..+++++.+.. +-|..+|.....++...|++++++
T Consensus 84 L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 84 LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHH
Confidence 34 34555555555543 2333454444444444432 45566666666533 224456666666666666677777
Q ss_pred HHHHHchHhCCCCCChhHHHHHHHHHHhc---CCH----HHHHHHHhh-CCCCC-CHHHHHHHHHHHHhc----CCHHHH
Q 009967 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRS---GRF----KEAKEFLYD-LPFDP-GIGFWKALLGGCQIH----SNVELG 428 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----g~~~~A 428 (521)
+.++++++... .+...|+....++.+. |.. +++.++..+ +...| |...|+.+...+... +...+|
T Consensus 163 ~~~~~~I~~d~--~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~ 240 (320)
T PLN02789 163 EYCHQLLEEDV--RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEV 240 (320)
T ss_pred HHHHHHHHHCC--CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhH
Confidence 77776664443 3344454444444333 222 345555533 33344 445777777776652 445678
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcC------------------ChHHHHHHHHHH
Q 009967 429 EFAARRILALDPEDVSSYVMLSNALSVAG------------------KWDNVSNIRREM 469 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 469 (521)
.+.+.++...+|+++.++..|+..|.... ..++|..+++.+
T Consensus 241 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 241 SSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 88888888888888999999999988642 336788888877
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=9.9e-07 Score=71.67 Aligned_cols=95 Identities=13% Similarity=-0.037 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 456 (521)
.+..+...+...|++++|...|+... ..| +...|..+..++...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 35567888999999999999999843 344 6778999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 009967 457 GKWDNVSNIRREMKEKG 473 (521)
Q Consensus 457 g~~~~A~~~~~~m~~~g 473 (521)
|++++|+..|++..+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987653
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=7.8e-06 Score=79.68 Aligned_cols=189 Identities=19% Similarity=0.185 Sum_probs=158.6
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967 271 GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350 (521)
Q Consensus 271 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 350 (521)
.+|-...-..+...+...|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+-.+ -+||..-|..+++.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455556677888899999999999999975 5788889999999999999999988777 36899999999998
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDP-GIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A 428 (521)
.....-+++|.++.+....+ .-..+.....+.+++.++.+.++. +...| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888899999998876322 222333344457999999999986 55444 466899999899999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
.+.|...+..+|++...|+.+..+|.+.|+..+|...+++..+...
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999988773
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=6.7e-06 Score=85.46 Aligned_cols=218 Identities=16% Similarity=0.124 Sum_probs=154.0
Q ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--------CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhHHH
Q 009967 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--------PNVVSYTTMICGLLKRERFEDALKLFQEMPH--RNVVSWN 209 (521)
Q Consensus 140 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~ 209 (521)
|-+...|-..|......+++++|.+++++... .-...|.++++.-...|.-+...++|++..+ .....|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44556677788888888888888888888764 1234677777777777888888888888776 2346688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhc
Q 009967 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK-LDVFVGNSLISFYAKC 288 (521)
Q Consensus 210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 288 (521)
.|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++..+++.-++ -.+....-.++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888888888888888888888775 2255667777777777777777788887777765443 2344445556666677
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhhccHH
Q 009967 289 GSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV--TLLGLLWACNHTGLVE 358 (521)
Q Consensus 289 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~ 358 (521)
|+.+.+..+|+.... .....|+..+..-.++|+.+.+..+|++....++.|-.. .|...+..--..|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 888888888877764 234578888888888888888888888887777666443 4445554444444433
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=3e-06 Score=80.33 Aligned_cols=246 Identities=15% Similarity=0.070 Sum_probs=149.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295 (521)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 295 (521)
.+.|+..+|.-.|+..+..+ +-+...|..+...-+..++-..|...+.++++..+. +..+.-+|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 34444444444444444432 112233334444444444444444444444444333 4555555555566666655666
Q ss_pred HHHhhcCCCCh-hHHHHHH---------HHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 009967 296 LVFDKLTERNI-VTWNAVI---------CGYAQNGRGEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364 (521)
Q Consensus 296 ~~~~~~~~~~~-~~~~~li---------~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 364 (521)
+.++.-....+ ..|.... ..+.....+....++|-++.. .+.++|......|.-.|.-.|++++|...|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 55554321000 0000000 111112223444555555443 454467777777777788899999999999
Q ss_pred HHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 009967 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELGEFAARRILALDPE- 441 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 441 (521)
+.+....+ -|..+||.|.-.++...+.++|+..|++ +.++|+.. ++..|..+|+..|.+++|...|-.++.+.+.
T Consensus 454 ~~AL~v~P--nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 454 EAALQVKP--NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHhcCC--chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 99875544 4566899999999999999999999988 45678744 8888999999999999999999999886543
Q ss_pred ---------CchHHHHHHHHHHhcCChHHHHHH
Q 009967 442 ---------DVSSYVMLSNALSVAGKWDNVSNI 465 (521)
Q Consensus 442 ---------~~~~~~~l~~~~~~~g~~~~A~~~ 465 (521)
+-.+|.+|=.++.-.++.|-+.++
T Consensus 532 ~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 532 RNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 124677777777777777755544
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=1.7e-05 Score=79.92 Aligned_cols=378 Identities=10% Similarity=-0.024 Sum_probs=187.3
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhC-CCCcHHHHHHHHHH
Q 009967 74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG-LQSNVFVGSAILDL 152 (521)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 152 (521)
..|..|...|...-+...|.+.|++..+.+ ..+..........|++..+++.|..+.-..-+.. ...-...|..+.-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 356666666665556666666666666543 3445555566666666666666666622222111 00011122223334
Q ss_pred HHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhH-HH--HHHHHHHhcCChHHHHH
Q 009967 153 YIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVS-WN--AMIGGYSQTGRNEEAVN 226 (521)
Q Consensus 153 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~--~l~~~~~~~~~~~~a~~ 226 (521)
|.+.++...|..-|+.... .|...|..+..+|.+.|++..|.++|.+...-++.. |. -.....+..|.+.+|+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 5556666666666665554 244456666666666676666666666555422211 11 11223344566666666
Q ss_pred HHHHHHHCC------CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHH
Q 009967 227 LFIEMLREG------LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-------LGKLDVFVGNSLISFYAKCGSMED 293 (521)
Q Consensus 227 ~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~ 293 (521)
.+....... ..--..++..+...+...|-...+..+++...+. ....+...|-.+ ..
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sd 721 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SD 721 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hH
Confidence 665544320 0011122222222223333333333333332211 000011111111 12
Q ss_pred HHHHHhhcCCCC---hhHHHHHHHHHHHcCCh---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--------hcc
Q 009967 294 SLLVFDKLTERN---IVTWNAVICGYAQNGRG---E---EAIEFFERMRINGIRPNGVTLLGLLWACNH--------TGL 356 (521)
Q Consensus 294 A~~~~~~~~~~~---~~~~~~li~~~~~~~~~---~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------~~~ 356 (521)
|-.+|-... |+ ......+..-.-..+.. | -+.+.+-.-.+ ...+..+|..++..|.+ ..+
T Consensus 722 ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 722 ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchh
Confidence 222333222 22 11111111111111111 1 11111111111 11223344444433322 123
Q ss_pred HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARR 434 (521)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (521)
...|...+.+.++... .+..+|+.|.-. ...|++.-|...|-+-. .+....+|..+.-.+....|++-|...|.+
T Consensus 799 ~~~Ai~c~KkaV~L~a--nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCA--NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHHhh--ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 3467777776654332 345566666554 66677777777765532 244566888888888888999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 435 ILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 435 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
...++|.+...|...+.+....|+.-++..+|..
T Consensus 876 ~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 876 VQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999999888888888888888887777777765
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=4.3e-05 Score=65.65 Aligned_cols=159 Identities=15% Similarity=0.070 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----h
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN----H 353 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~ 353 (521)
...-...|+..|++++|.+...... +......=+..+.+..+++-|.+.+++|.+. -+..|.+.|..++. .
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 3334455677777777777777632 2333333334455666777777777777763 25556666666553 2
Q ss_pred hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHH
Q 009967 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHS-NVELGEF 430 (521)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~ 430 (521)
.+.+..|.-+|+++.++.+ |++.+.+...-+....|++++|..+++..- ...++.+...++-.-...| +.+-..+
T Consensus 186 gek~qdAfyifeE~s~k~~--~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTP--PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcccC--CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 3456777777777753344 676677777777777777777777776632 1233444444443333333 3344445
Q ss_pred HHHHHHhcCCCCc
Q 009967 431 AARRILALDPEDV 443 (521)
Q Consensus 431 ~~~~~~~~~p~~~ 443 (521)
.+.++....|.++
T Consensus 264 ~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 264 NLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhcCCcch
Confidence 5566666666554
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.58 E-value=7.3e-06 Score=83.53 Aligned_cols=175 Identities=9% Similarity=-0.001 Sum_probs=127.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHH
Q 009967 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC 382 (521)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 382 (521)
.++..+..|.....+.|.+++|..+++...+ +.|+.. ....+..++.+.+++++|....++.....+ .+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--SSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--CCHHHHHH
Confidence 3477888888888999999999999999887 457655 666777888899999999999998864443 45567788
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChH
Q 009967 383 MVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460 (521)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 460 (521)
+..++.+.|++++|..+|+++. ..|+ ..++..+..++...|+.++|...|+++++..-+-...|+.++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 8888999999999999999864 3444 668888888899999999999999999886544444444332 2334
Q ss_pred HHHHHHHHHHhCCCccCCcceEEEECCE
Q 009967 461 NVSNIRREMKEKGMTRVPGCSWIEIKSK 488 (521)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~~~~~~ 488 (521)
.-...++++.-.+......++.+.+++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKM 261 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHH
Confidence 4455666665555444444444444443
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.57 E-value=1.8e-06 Score=68.91 Aligned_cols=117 Identities=10% Similarity=0.076 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 456 (521)
..-.+...+...|++++|..+|+-+. ..| +...|..|..++...|++++|+..|.++..++|++|..+..++.++...
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 44456667778999999999999854 344 5668888999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 009967 457 GKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518 (521)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 518 (521)
|+.+.|++.|+..+... ..+|+...|.+.-+.+++.+..
T Consensus 117 G~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred CCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 99999999999877543 2458888888888888777664
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.57 E-value=1.6e-05 Score=81.94 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=21.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
+-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3334444555555555555555555555555555555554
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.54 E-value=1.7e-05 Score=68.13 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389 (521)
Q Consensus 310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (521)
..+-..+...|+-+....+........ .-|.......+......|++..|...++++....+ +|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p--~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP--TDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC--CChhhhhHHHHHHHH
Confidence 444555566666666666665543321 12333444466666777777777777777643333 666777777777777
Q ss_pred cCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967 390 SGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 390 ~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (521)
.|+++.|..-|.+. .+ ..++...+.+...+...||.+.|..++.+.....+.+..+-..++......|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777777666652 23 33445667777777777777777777777777777677777777777777777777776654
Q ss_pred H
Q 009967 468 E 468 (521)
Q Consensus 468 ~ 468 (521)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=1.4e-05 Score=71.57 Aligned_cols=182 Identities=13% Similarity=0.011 Sum_probs=126.7
Q ss_pred CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hh---HH
Q 009967 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL--DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-IV---TW 309 (521)
Q Consensus 238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~ 309 (521)
.....+......+...|+++.|...++.+.+..+.. ....+..+..++.+.|+++.|...++++.+ |+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 344567777888999999999999999998876531 124667788999999999999999999975 32 22 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHH
Q 009967 310 NAVICGYAQN--------GRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380 (521)
Q Consensus 310 ~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (521)
..+..++... |++++|.+.++.+... .|+.. ....+... +.... .. ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~------~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN------RL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH------HH---------HHHH
Confidence 5566666654 7899999999999875 35543 22222111 00000 00 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC-CC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967 381 ACMVDLLSRSGRFKEAKEFLYDLP-FD---P-GIGFWKALLGGCQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~~~-~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 440 (521)
..+...|.+.|++++|...++... .. | ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356677888899999998888742 22 2 245788888889999999999998888877655
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=1.8e-05 Score=67.99 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=116.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361 (521)
Q Consensus 282 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 361 (521)
+-.|...|+++.+....+.+..+.. .+...++.+++...++...... +.|...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567788888877655544433220 1112566778888888877654 456778999999999999999999
Q ss_pred HHHHHchHhCCCCCChhHHHHHHHHH-HhcCC--HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967 362 SYFSQAKLEDPGMLKPEHYACMVDLL-SRSGR--FKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRIL 436 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (521)
..|+++....+ .+...+..+..++ .+.|+ .++|.+++++.. ..| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999875554 4667788888864 67777 599999999853 345 56688888888999999999999999999
Q ss_pred hcCCCCchHH
Q 009967 437 ALDPEDVSSY 446 (521)
Q Consensus 437 ~~~p~~~~~~ 446 (521)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9988765544
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=1.5e-05 Score=68.50 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 009967 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKAL 415 (521)
Q Consensus 338 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 415 (521)
.|+......+-..+.-.|+-+....+.......++ .+......++....+.|++..|...+++.. .++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45444335566677778888888888877643333 566677779999999999999999999853 36778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
..+|.+.|+++.|...|.+++++.|+++..++.++..|.-.|+++.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999876554
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2.2e-07 Score=53.76 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 009967 138 GLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169 (521)
Q Consensus 138 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 169 (521)
|+.||..+|+.+|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=1.5e-05 Score=81.22 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=112.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 009967 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN-IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGL 347 (521)
Q Consensus 272 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l 347 (521)
..++..+..|.....+.|.+++|..+++...+ |+ ......++..+.+.+++++|...+++..... |+.. ....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 34688888899999999999999999999986 44 4577778889999999999999999988854 6555 55566
Q ss_pred HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHH
Q 009967 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALL 416 (521)
Q Consensus 348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 416 (521)
..++...|++++|..+|+++.... .-+..++..+..++...|+.++|...|++.. ..|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 667889999999999999997422 2346788899999999999999999998853 255556655554
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=7.7e-05 Score=64.16 Aligned_cols=150 Identities=16% Similarity=0.122 Sum_probs=96.3
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH----c
Q 009967 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-NIVTWNAVICGYAQ----N 319 (521)
Q Consensus 245 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~ 319 (521)
.-...|...++++.|.+...... +......=+.++.+..+++-|.+.+++|.+- +..+.+.|..++.+ .
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccc
Confidence 33444555555555555544411 2233333345566777788888888888873 34466666666654 3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHH-HH
Q 009967 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEA-KE 398 (521)
Q Consensus 320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~ 398 (521)
+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++.+..+.. -++.+...++.+-...|...++ .+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA--KDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCCChHHHHH
Confidence 4678888888888764 568888888888888888888888888888875554 4566666666666666655443 34
Q ss_pred HHhhC
Q 009967 399 FLYDL 403 (521)
Q Consensus 399 ~~~~~ 403 (521)
.+.++
T Consensus 264 ~l~QL 268 (299)
T KOG3081|consen 264 NLSQL 268 (299)
T ss_pred HHHHH
Confidence 44444
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=8.7e-05 Score=76.68 Aligned_cols=235 Identities=7% Similarity=-0.011 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcC
Q 009967 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR 187 (521)
Q Consensus 108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 187 (521)
...+..|+..+...+++++|.++.+...+.. +-....|-.+.-.+.+.++.+.+..+ .+ +......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~-----------l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL-----------IDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh-----------hhhcccc
Confidence 3445555555555566666666655444432 11222222233344455554444333 11 1111122
Q ss_pred CCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHH
Q 009967 188 ERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265 (521)
Q Consensus 188 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 265 (521)
.++.-...+...+.. .+..++..++.+|-+.|+.++|..+|+++++.+ +-|....+.+...++.. +++.|..++..
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 222222222222222 233466677777777777777777777777755 33444555555555555 55555555554
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHH
Q 009967 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNGVTL 344 (521)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~ 344 (521)
++.. |...+++..+.++|.++.+-++.- ++.-..+.+.+... |..--..++
T Consensus 175 AV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~~~~~~~~ 226 (906)
T PRK14720 175 AIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREFTRLVGLL 226 (906)
T ss_pred HHHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhccchhHHHH
Confidence 4332 444455555555555555433221 11122222222221 111223344
Q ss_pred HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS 388 (521)
Q Consensus 345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (521)
..+-..|...++++++..+++.+.+..+ -|......++.+|.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~--~n~~a~~~l~~~y~ 268 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDN--KNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCC--cchhhHHHHHHHHH
Confidence 4455566666677777777777653332 23344555555554
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=3.7e-06 Score=67.94 Aligned_cols=95 Identities=25% Similarity=0.342 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 378 EHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
.....+...+...|++++|.+.++.+. ..| +...|..+...+...|+++.|...++++++.+|+++..+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 345556666667777777777776642 223 455666677777777777777777777777777777777777778888
Q ss_pred cCChHHHHHHHHHHHhC
Q 009967 456 AGKWDNVSNIRREMKEK 472 (521)
Q Consensus 456 ~g~~~~A~~~~~~m~~~ 472 (521)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888877776654
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=5.4e-07 Score=52.11 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=21.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301 (521)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 301 (521)
|+.||..+|++|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666665
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.39 E-value=0.0022 Score=60.95 Aligned_cols=387 Identities=13% Similarity=0.101 Sum_probs=228.5
Q ss_pred hhhhcccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcC-CCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA-LED 123 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~ 123 (521)
|++-+..+ .++++++.++++.. | ....|..-+..-.+.++++...++|.++...- .+...|...+.--.+ .++
T Consensus 26 lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~YVR~~~~~ 102 (656)
T KOG1914|consen 26 LIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLSYVRETKGK 102 (656)
T ss_pred HHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHHHHHHHccC
Confidence 66666555 88999999988764 3 45678888999999999999999999988653 345555555543221 222
Q ss_pred h----HHHHHHHHHHH-HhCCCC-cHHHHHHHHHHH---------HcCCCHHHHHHHhhcCCC-C---------CchhHH
Q 009967 124 L----NLGKQLHAWAT-KVGLQS-NVFVGSAILDLY---------IKLSSIEEATRVFEDTHN-P---------NVVSYT 178 (521)
Q Consensus 124 ~----~~a~~~~~~~~-~~~~~~-~~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~-~---------~~~~~~ 178 (521)
. ....+.|+-.. +.|+.+ +..+|+..+..+ ....+++...+++.++.. | |-..|.
T Consensus 103 ~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE 182 (656)
T KOG1914|consen 103 LFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFE 182 (656)
T ss_pred cchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 2 22334444333 345443 334455554432 333456667777777764 2 111222
Q ss_pred HHHHHH-------HcCCCHHHHHHHHhhCCC---------C------------ChhHHHHHHHHHHhcCC--------hH
Q 009967 179 TMICGL-------LKRERFEDALKLFQEMPH---------R------------NVVSWNAMIGGYSQTGR--------NE 222 (521)
Q Consensus 179 ~li~~~-------~~~g~~~~a~~~~~~~~~---------~------------~~~~~~~l~~~~~~~~~--------~~ 222 (521)
.=|+.. -+...+..|.++++++.. + .+..|..+|.--...+- ..
T Consensus 183 ~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~ 262 (656)
T KOG1914|consen 183 QEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTR 262 (656)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHH
Confidence 112111 123445566666665431 0 01224333332221110 01
Q ss_pred HHHHHHHHH-HHCCCCCChhhHH-H----HHHHHHhhcch-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--
Q 009967 223 EAVNLFIEM-LREGLVPNHSTLP-C----AIIAAANIAAL-------GMGKSFHACAVKFLGKLDVFVGNSLISFYAK-- 287 (521)
Q Consensus 223 ~a~~~~~~m-~~~~~~p~~~~~~-~----ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 287 (521)
+..-++++. .--+..|+..... . .-..+...|+. +++..+++.....-...+..+|..+.+.--.
T Consensus 263 Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~ 342 (656)
T KOG1914|consen 263 RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRY 342 (656)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhc
Confidence 222222222 1223333322111 1 11122333333 4444555554443333344444444332111
Q ss_pred -cCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHH
Q 009967 288 -CGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGY 361 (521)
Q Consensus 288 -~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 361 (521)
....+.....++++.. .-..+|-.++..-.+......|..+|.++.+.+..+ +....+.++..+| .++.+-|.
T Consensus 343 ~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~Af 421 (656)
T KOG1914|consen 343 DDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAF 421 (656)
T ss_pred ccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHH
Confidence 1135555566666553 223478888888888889999999999999988777 6667778887665 47889999
Q ss_pred HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF---DPG--IGFWKALLGGCQIHSNVELGEFAARRIL 436 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (521)
++|+.-..+.| .++..-...++.+...|+-..+..+|++... .|+ ...|..++..-..-||...+.++-++..
T Consensus 422 rIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 422 RIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99998776776 4555566788889999999999999998642 333 4589999999999999999999999888
Q ss_pred hcCC
Q 009967 437 ALDP 440 (521)
Q Consensus 437 ~~~p 440 (521)
...|
T Consensus 500 ~af~ 503 (656)
T KOG1914|consen 500 TAFP 503 (656)
T ss_pred Hhcc
Confidence 8666
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.0043 Score=62.71 Aligned_cols=413 Identities=12% Similarity=0.065 Sum_probs=239.3
Q ss_pred cccCCChhHHHHHhccCCCC-CcccHHHHHHHH--HhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHH
Q 009967 52 GSESDKFSSVHQVFDEVPDL-NVVSATTIIGRF--AKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128 (521)
Q Consensus 52 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 128 (521)
....++|..|.+..+++.+. ....|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34567888888888776532 223455555554 5778899999888887766533 7788888888888899999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHH----HHHHhhcCCCCCchhHHHHHHHHHcCCC----------HHHHH
Q 009967 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE----ATRVFEDTHNPNVVSYTTMICGLLKRER----------FEDAL 194 (521)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~ 194 (521)
.+|+...+. .|+......+..+|.+.+++.+ |.++++... .+...+...++.+.+.-. ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999988874 4667777778888888877654 445555433 334455555555544321 23455
Q ss_pred HHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967 195 KLFQEMPHRN-----VVSWNAMIGGYSQTGRNEEAVNLFI-EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268 (521)
Q Consensus 195 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 268 (521)
+.++.+.+.+ ..-...-...+...|++++|..++. ...+.-..-+...-+.-+..+...+.+.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 6666655433 1111222334456788888888883 344433333444445667777888888888888888888
Q ss_pred cCCCCChhHHHHHHHHHH----------------hcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHH---HcCChHHHHHH
Q 009967 269 FLGKLDVFVGNSLISFYA----------------KCGSMEDSLLVFDKLTER-NIVTWNAVICGYA---QNGRGEEAIEF 328 (521)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~~~~~A~~~ 328 (521)
.|.. | |...++.+. ..+..+...+...+.... ....|-+-+.++. .-|+.+++...
T Consensus 255 k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 7755 2 322222111 112233333333332221 1122333333332 34666665544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-Chh---HHHHHHHHHHhcCCH-----HHHHHH
Q 009967 329 FERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPE---HYACMVDLLSRSGRF-----KEAKEF 399 (521)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~---~~~~l~~~~~~~g~~-----~~A~~~ 399 (521)
|-+ +.|-+| .+..=+..|...=..++-..++.......+... +.. -+...+..-.-.|.+ +.-..+
T Consensus 331 y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 331 YFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred HHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 432 233333 222223333333344555666665542222111 111 122233333333422 222333
Q ss_pred HhhC--------C----CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 400 LYDL--------P----FDPGI---------GFWKALLGGCQIHSNVE---LGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 400 ~~~~--------~----~~~~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
+++. . .-|.. .+.+.|+..+.+.+|.. +|+.+++.....+|.|..+-..++++|.-
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~ 485 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSY 485 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 3221 1 11221 14566777888877654 78899999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCCCccC
Q 009967 456 AGKWDNVSNIRREMKEKGMTRV 477 (521)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~~~ 477 (521)
.|-+..|.+.++.+--+.+..+
T Consensus 486 lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 486 LGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred hcCChhHHHHHHhcchHHhhhc
Confidence 9999999999998865555443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=0.0001 Score=69.06 Aligned_cols=117 Identities=21% Similarity=0.152 Sum_probs=70.3
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A 428 (521)
+...|+++.|+..++.+....+ -|+.......+.+.+.|+.++|.+.++++. ..|+ ...+-.+..++.+.|++++|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P--~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQP--DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3445666666666666654443 344445555666666666666666666532 3444 33555566666666666666
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
+..+.+....+|+++..|..|+.+|...|+..+|.....++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 66666666666666666666666666666665555555444
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00044 Score=64.92 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=69.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 009967 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTL-PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMED 293 (521)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 293 (521)
+...|+++.|+..++.+... .|+...| ......+...++..+|.+.++.++...+. .....-.+.+++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 33445555555555554442 1333222 23334445555555555555555544333 24444556666666666666
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967 294 SLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 294 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
|+.+++.... .|+..|..|.++|...|+..++..-..+ .+...|+++.|...+....
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 6666666553 3455666666666666666555543332 2344556666666655554
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=1.8e-05 Score=74.71 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHh
Q 009967 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQI 421 (521)
Q Consensus 344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 421 (521)
...|+..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+. ...| +..........+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 3455566666777888888888876333 34 3445777777777778888877763 2233 55566666777899
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
.++++.|+.+.+++....|.+..+|..|+.+|...|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999875
No 136
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=0.00014 Score=67.34 Aligned_cols=189 Identities=14% Similarity=0.085 Sum_probs=136.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc
Q 009967 281 LISFYAKCGSMEDSLLVFDKLTERN---IVTWNAVICGYAQNG-RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356 (521)
Q Consensus 281 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 356 (521)
+-..+...+..++|..+..++.+.+ ..+|+....++...| ++++++..++++.+.. +-+..+|+.-...+.+.|+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 3344555678889999988887633 346666666666677 6899999999988754 2233456655445555565
Q ss_pred --HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhc---CC----H
Q 009967 357 --VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIH---SN----V 425 (521)
Q Consensus 357 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~---g~----~ 425 (521)
.+++..+++++.+..+ -+..+|.....++.+.|+++++++.++++. . ..+..+|+.....+... |. .
T Consensus 122 ~~~~~el~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3677888888875554 566788888888999999999999999863 2 34566777776665544 22 2
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhc----CChHHHHHHHHHHHhC
Q 009967 426 ELGEFAARRILALDPEDVSSYVMLSNALSVA----GKWDNVSNIRREMKEK 472 (521)
Q Consensus 426 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~ 472 (521)
+.++....+++..+|+|..+|+.+...+... ++..+|.+.+.+..+.
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 5788888899999999999999999999883 4456788887776553
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.28 E-value=3.5e-05 Score=62.19 Aligned_cols=114 Identities=9% Similarity=0.014 Sum_probs=86.0
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 009967 328 FFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PF 405 (521)
Q Consensus 328 ~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 405 (521)
++++... ..|+. .....+...+...|++++|.+.++.+....+ .++..+..+..++...|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 33443 4455666778888999999999988864443 46677888889999999999999888874 23
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967 406 -DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445 (521)
Q Consensus 406 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 445 (521)
+.+...+..+...+...|+++.|...|+++++.+|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 3456677778888999999999999999999999976653
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00012 Score=62.51 Aligned_cols=185 Identities=16% Similarity=0.188 Sum_probs=144.3
Q ss_pred hcCCHHHHHHHHhhcCC--------CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhhcc
Q 009967 287 KCGSMEDSLLVFDKLTE--------RNIV-TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW-ACNHTGL 356 (521)
Q Consensus 287 ~~g~~~~A~~~~~~~~~--------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~ 356 (521)
...+.++..+++..+.. ++.. .|..++-+....|+.+.|...++.+... + |.+.-...+-. -+...|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence 35688899999988763 3332 4555666677889999999999998875 3 66554333322 2567899
Q ss_pred HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARR 434 (521)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (521)
+++|.++++.+.++.+ .|..++..-+-.....|+.-+|++-+.+.. +..|...|..+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~ddp--t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDP--TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccCc--chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999986653 566677777777778888888887776632 467899999999999999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCc
Q 009967 435 ILALDPEDVSSYVMLSNALSVAG---KWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 435 ~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~ 475 (521)
++=.+|-++..+..++..+.-.| +..-|+++|.+..+....
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 99999999999999999977665 456788999998876553
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00023 Score=60.87 Aligned_cols=199 Identities=14% Similarity=0.087 Sum_probs=141.8
Q ss_pred hcchHHHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh-HHHHHHHHHHHcCChHH
Q 009967 253 IAALGMGKSFHACAVK---FL-GKLDVF-VGNSLISFYAKCGSMEDSLLVFDKLTE--RNIV-TWNAVICGYAQNGRGEE 324 (521)
Q Consensus 253 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~ 324 (521)
..+.++..+++.++.. .| ..++.. ++..++-+....|+.+.|..+++.+.. |+.. +-..-...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3466777777777754 23 444443 445556667788999999999998875 3322 11111223455799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404 (521)
Q Consensus 325 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 404 (521)
|+++++.+.+.. +-|..++..=+...-..|+.-+|++-+....+... .|...|..+...|...|+++.|.-.++++.
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~--~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM--NDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999876 34555666555566667777788887777755554 788999999999999999999999999964
Q ss_pred -CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 405 -FDP-GIGFWKALLGGCQIH---SNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 405 -~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
..| ++..+..+...+.-. .+.+.|.++|.+++++.|.+...+..+..++.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 355 455667777764433 48889999999999999976666665554443
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=7.8e-05 Score=70.41 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355 (521)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 355 (521)
.....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..... +-+...+..-...+...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3455667777788999999999999998777788888899988999999999999988642 335556666666688999
Q ss_pred cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 009967 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405 (521)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 405 (521)
+++.|..+.+++....+ .+..+|..|+.+|.+.|+++.|+-.++.++.
T Consensus 249 ~~~lAL~iAk~av~lsP--~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELSP--SEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999874443 3455899999999999999999999998863
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.22 E-value=0.0091 Score=60.46 Aligned_cols=188 Identities=12% Similarity=0.113 Sum_probs=134.0
Q ss_pred hhhhc--ccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC
Q 009967 48 SVSCG--SESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122 (521)
Q Consensus 48 l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 122 (521)
.+.++ .|.|+.++|..+++.... .|..+...+-..|...|+.++|..+|++..+. .|+......+..+|.+.+
T Consensus 47 vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 44444 488999999999987653 36678888888999999999999999999875 477888888999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCC----------CHHHHHHHhhcCCCCC--chh---HHHHHHHHHcC
Q 009967 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS----------SIEEATRVFEDTHNPN--VVS---YTTMICGLLKR 187 (521)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~a~~~~~~~~~~~--~~~---~~~li~~~~~~ 187 (521)
++.+-.++--++-+ .++-+...+-+++..+...- -..-|.+.++.+.+.+ ..+ .......+-..
T Consensus 125 ~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~ 203 (932)
T KOG2053|consen 125 SYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ 203 (932)
T ss_pred HHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 88877666666655 34566777777777766532 1234555666655522 111 12223445678
Q ss_pred CCHHHHHHHHhh-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 009967 188 ERFEDALKLFQE-----MPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH 240 (521)
Q Consensus 188 g~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (521)
|++++|.+++.. ....+...-+--+..+...+++.+..++-.++...| +|.
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd 259 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD 259 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc
Confidence 899999999842 222344455566778888899999999998888876 553
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.21 E-value=2.8e-06 Score=49.92 Aligned_cols=35 Identities=37% Similarity=0.484 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCh
Q 009967 74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE 108 (521)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 108 (521)
.+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998874
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=7e-05 Score=61.10 Aligned_cols=114 Identities=13% Similarity=0.041 Sum_probs=56.4
Q ss_pred hccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCHH----HHHHHHHHHHhcCCHHH
Q 009967 354 TGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLPF-DPGIG----FWKALLGGCQIHSNVEL 427 (521)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~ 427 (521)
.++...+...++.+....+-.+- ....-.+...+...|++++|...|+.+.. .|+.. ....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555433332111 11223344555555555555555555321 12221 23334445556666666
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
|+..++.... .+-.+..+...+.+|.+.|++++|+..|++
T Consensus 104 Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666644221 222455566666666667777776666654
No 144
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.20 E-value=0.0055 Score=57.18 Aligned_cols=407 Identities=10% Similarity=0.065 Sum_probs=217.9
Q ss_pred cccCCChhHHHHHhccCCCC---Ccc------cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHH--HcC
Q 009967 52 GSESDKFSSVHQVFDEVPDL---NVV------SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPS--STA 120 (521)
Q Consensus 52 ~~~~g~~~~A~~~~~~~~~~---~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~ 120 (521)
+-+++++.+|.++|.++-+. +.. .-+.++++|..+ +.+.....+....+. .| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 44788999999999887532 212 234566666654 455555555555543 23 3445555555 457
Q ss_pred CCChHHHHHHHHHHHHh--CCCC------------cHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--------CCchhHH
Q 009967 121 LEDLNLGKQLHAWATKV--GLQS------------NVFVGSAILDLYIKLSSIEEATRVFEDTHN--------PNVVSYT 178 (521)
Q Consensus 121 ~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~ 178 (521)
.+++++|.+.+...... +..+ |...-+..+.++...|.+.++..+++++.+ -+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899998888876654 2222 222335667788889999999988888764 4667777
Q ss_pred HHHHHHHcCCC---------------HHHHHHHHhhCCC----------CChhHHHHHHHHHHhc--CChHHHHHHHHHH
Q 009967 179 TMICGLLKRER---------------FEDALKLFQEMPH----------RNVVSWNAMIGGYSQT--GRNEEAVNLFIEM 231 (521)
Q Consensus 179 ~li~~~~~~g~---------------~~~a~~~~~~~~~----------~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m 231 (521)
.++-.++++=- ++-+.-..+++.. |.......++....-. .+..--.++++..
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 75544443211 1111111112211 1112222222222221 1122233444444
Q ss_pred HHCCCCCChhhHH-HHHHHHHhhcchHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC
Q 009967 232 LREGLVPNHSTLP-CAIIAAANIAALGMGKSFHACAVKFLGKL----DVFVGNSLISFYAKCGSMEDSLLVFDKLT--ER 304 (521)
Q Consensus 232 ~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 304 (521)
.+.-+.|+..... .+.....+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+.-+. +|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 4444455533222 12222222 4445544444444332211 23455666666677777777777766554 34
Q ss_pred ChhHHH-------HHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH---HHhhc-cHHHHHHHHHHch
Q 009967 305 NIVTWN-------AVICGYAQN----GRGEEAIEFFERMRINGIRPNGV-TLLGLLWA---CNHTG-LVEKGYSYFSQAK 368 (521)
Q Consensus 305 ~~~~~~-------~li~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~---~~~~~-~~~~a~~~~~~~~ 368 (521)
+...-. .+-+..+.. -+...=+.+|+......+ |.. -...++.+ +-+.| .-++|.++++.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 433211 222222211 112233445555544332 322 22222222 22333 3778888888876
Q ss_pred HhCCCCCChhHHHHHH----HHHHhc---CCHHH---HHHHHhhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHH
Q 009967 369 LEDPGMLKPEHYACMV----DLLSRS---GRFKE---AKEFLYDLPFDP----GIGFWKALLGG--CQIHSNVELGEFAA 432 (521)
Q Consensus 369 ~~~~~~~~~~~~~~l~----~~~~~~---g~~~~---A~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~ 432 (521)
.-.+ -|..+-+.+. ..|... ..+.+ -+.++++..+.| +...-+.|..+ +..+|++.++.-.-
T Consensus 408 ~ft~--yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 408 QFTN--YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred Hhcc--ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3332 2333333222 222221 11222 223333433333 33356667666 67899999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 433 RRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 433 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
.-+.++.| ++.+|..++-++....++++|+.++.++
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999999 9999999999999999999999999974
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=3.9e-06 Score=48.91 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC
Q 009967 74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP 106 (521)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 106 (521)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.13 E-value=1.2e-05 Score=56.09 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 009967 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG-KWDNVSNIRREMKEK 472 (521)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 472 (521)
+...|..+...+...|++++|+..|+++++.+|+++.+|..++.++...| ++++|+..+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678889999999999999999999999999999999999999999999 799999999987653
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.08 E-value=4.9e-05 Score=56.62 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967 380 YACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457 (521)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 457 (521)
+..+...+...|++++|...+++. ...| +...+..+...+...|+++.|.+.+++.....|.++.++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888764 2233 33566777777888889999999999998888888888888999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 009967 458 KWDNVSNIRREMKEK 472 (521)
Q Consensus 458 ~~~~A~~~~~~m~~~ 472 (521)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888886643
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=7.8e-06 Score=47.99 Aligned_cols=34 Identities=47% Similarity=0.788 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009967 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN 340 (521)
Q Consensus 307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 340 (521)
.+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.06 E-value=1.7e-05 Score=54.51 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+...+...|++++|+..|+++++..|+++.++..++.++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566788899999999999999999999999999999999999999999999988754
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.06 E-value=7.5e-05 Score=58.59 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHH
Q 009967 380 YACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPED---VSSYVMLSN 451 (521)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 451 (521)
+..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...|+++....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444444555555555555554432 1121 1233444555555566666666666665555543 344555556
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 009967 452 ALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~ 472 (521)
++...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666655544
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00024 Score=57.97 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC--hhHHH
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG----VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK--PEHYA 381 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 381 (521)
.|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+.... ..+. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence 344445444 3677788887788877753 332 233344556777888888888888886333 1122 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967 382 CMVDLLSRSGRFKEAKEFLYDLPFD-PGIGFWKALLGGCQIHSNVELGEFAARRI 435 (521)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (521)
.|..++...|++++|+..++..... .....+......+...|++++|+..|+++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5677788888888888888775422 22335555666788888888888888765
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=1.1e-05 Score=47.02 Aligned_cols=33 Identities=30% Similarity=0.689 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009967 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRP 339 (521)
Q Consensus 307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 339 (521)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999888887
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=0.00014 Score=57.07 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALL 416 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 416 (521)
++..+...+...|++++|...|+.+....+-.+ ....+..+..++.+.|+++.|...++.+. ..|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555556667777777777777654443211 13345556777777777777777777642 2233 34566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967 417 GGCQIHSNVELGEFAARRILALDPEDVSSYV 447 (521)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 447 (521)
.++...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888887665443
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.00015 Score=68.84 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=72.9
Q ss_pred HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 009967 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNV 425 (521)
Q Consensus 348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 425 (521)
...+...|+++.|...|+++....+ .+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3445667888888888888765444 34556777777888888888888877764 2344 455777777777788888
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 426 ELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 426 ~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
++|+..|+++++++|+++.+...+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888888888777766555444
No 155
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=2.2e-05 Score=54.47 Aligned_cols=53 Identities=9% Similarity=0.237 Sum_probs=47.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
...|++++|++.|++++..+|+++.++..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999986654
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.011 Score=58.22 Aligned_cols=297 Identities=12% Similarity=0.018 Sum_probs=174.8
Q ss_pred cccccCCCcccchhhcccc-CCCCccchHHHHHHHhhcCCCchh---hhhhcccC----------CChhHHHHHhccCCC
Q 009967 5 LCICRSSLSLNKLSKLHSL-APNYLIETQKASVQKLETPAIRTD---SVSCGSES----------DKFSSVHQVFDEVPD 70 (521)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~---l~~~~~~~----------g~~~~A~~~~~~~~~ 70 (521)
..+++.+.+..+.+.--+. -+.++.-...+.+.++..| -.|+ +++.-.+. =.+++|.+..+. .
T Consensus 613 myifrgndpeEp~s~sGyIc~FedLeitsVlld~Il~~p-E~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEd--n 689 (1189)
T KOG2041|consen 613 MYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKILLTP-ENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIED--N 689 (1189)
T ss_pred EEEecCcCccccccccceEEEeeceEEEEEEHhhHhcCc-CCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhc--C
Confidence 3455555555554443333 3444444445556666665 3444 33332222 234555555543 4
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHhHHC-CCCCC--------hhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCC
Q 009967 71 LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-NIRPS--------EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQS 141 (521)
Q Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 141 (521)
|.+..|..+...-.+.-.++.|...|-+.... |++.- ...-..=+ -+--|++++|+++|-+|-+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhh---
Confidence 66688998888877777888888887776542 32210 11111111 223478889988887776643
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCC-----CchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 009967 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNP-----NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216 (521)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 216 (521)
..+..+.+.|||-...++++.-... -...|+.+...++....+++|.+.|..-... ...+.++.
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly 833 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLY 833 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHH
Confidence 3466777888888888888775441 1246778888888888888888887766531 22345555
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 009967 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296 (521)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 296 (521)
+..++++-..+-.. ++-+...+-.+..++.+.|.-++|.+.+-.. +.+ .+.+..|...++|.+|.+
T Consensus 834 ~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 834 RLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHHHHHHHHHHHH
Confidence 55555544443332 3345556667778888888888776654322 111 345667777888888888
Q ss_pred HHhhcCCCChhHHHH--------------HHHHHHHcCChHHHHHHHHHHHH
Q 009967 297 VFDKLTERNIVTWNA--------------VICGYAQNGRGEEAIEFFERMRI 334 (521)
Q Consensus 297 ~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~A~~~~~~m~~ 334 (521)
+-++..-|.+.+.-+ -|..+.+.|++-.|-+++.+|.+
T Consensus 900 laq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 900 LAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 877766554443211 23344556666666666666654
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0002 Score=63.39 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=87.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCchHHHHH
Q 009967 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIH---SNVELGEFAARRILALDPEDVSSYVML 449 (521)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l 449 (521)
-|...|..|...|.+.|+++.|..-|.+. .+ .+++..+..+..++... ....++..+|++++..+|.|+.+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 56778999999999999999999999873 22 55666777777774332 367789999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 009967 450 SNALSVAGKWDNVSNIRREMKEKGMTRVPG 479 (521)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (521)
+..+...|++.+|...|+.|.+.....+|+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 999999999999999999999886655543
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=8.3e-06 Score=59.41 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH
Q 009967 390 SGRFKEAKEFLYDLP-FDP---GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465 (521)
Q Consensus 390 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 465 (521)
.|+++.|+.+++++. ..| +...+..+..++.+.|++++|+.++++ ...+|.++.....++.++.+.|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355666666666542 122 333455566677777777777777777 556666666666778888888888888877
Q ss_pred HHH
Q 009967 466 RRE 468 (521)
Q Consensus 466 ~~~ 468 (521)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.96 E-value=0.0012 Score=60.66 Aligned_cols=136 Identities=19% Similarity=0.151 Sum_probs=78.7
Q ss_pred HHHHHHHhc-CCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-H
Q 009967 280 SLISFYAKC-GSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRINGIR-----PNGV-T 343 (521)
Q Consensus 280 ~l~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~-~ 343 (521)
.+...|... |+++.|.+.|++..+ .. ..++..+...+.+.|++++|.++|++....-.. .+.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 345556565 777777777776653 11 135666778888899999999999887664322 2222 2
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHchHhCC-CCCCh--hHHHHHHHHHHh--cCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 009967 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDP-GMLKP--EHYACMVDLLSR--SGRFKEAKEFLYDLPFDPGIGFWKALL 416 (521)
Q Consensus 344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~l~ 416 (521)
+...+-++...||...|...+++.....+ +..+. .....|+.++-. ...++++..-|+.+. +.|..--..|+
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l~ 275 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHHH
Confidence 33334456677888899988888764432 32332 245566777643 335777777777776 55555433333
No 160
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.91 E-value=0.02 Score=53.59 Aligned_cols=107 Identities=10% Similarity=0.011 Sum_probs=68.0
Q ss_pred hhhhcccCCChhHHHHHhccCCC-CCcccHHHHHHHH--HhcCChHHHHHHHHHhHHC--CCCC------------Chhh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD-LNVVSATTIIGRF--AKQHHYEEAIYLFSRMLLL--NIRP------------SEFT 110 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~--~~~p------------~~~~ 110 (521)
++.+|-- ++.+.....+..+.+ -....|-.+..++ -+.+.+.+|++.+..-... +-.| |-..
T Consensus 52 ilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l 130 (549)
T PF07079_consen 52 ILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFL 130 (549)
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHH
Confidence 5555532 345555555444432 1245566666654 4678999999988877654 3222 1222
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhCC----CCcHHHHHHHHHHHHc
Q 009967 111 FGSVIPSSTALEDLNLGKQLHAWATKVGL----QSNVFVGSAILDLYIK 155 (521)
Q Consensus 111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 155 (521)
-+..+..+...|++.++..+++.+...=+ ..+..+|+.++-.+.+
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 23455667899999999999998876543 3788899886655544
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00018 Score=63.25 Aligned_cols=106 Identities=19% Similarity=0.139 Sum_probs=76.9
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELG 428 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A 428 (521)
..+.+++++|...|.+++.-.+ -|+..|..=..+|.+.|.++.|++-.+. +.+.|... +|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4567788888888888774443 3555677777888888888888877766 34455533 888888888888888888
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 429 EFAARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
++.|+++++++|++......|-.+-.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 888888888888887666666555444433
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.89 E-value=0.00024 Score=59.94 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 453 (521)
.+..+...+...|++++|...+++.. ..|+ ...+..+...+...|++++|+..++++++..|.++..+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45566666666777777777766532 1121 346677777788888888888888888888888888888888888
Q ss_pred HhcCC--------------hHHHHHHHHHHHh
Q 009967 454 SVAGK--------------WDNVSNIRREMKE 471 (521)
Q Consensus 454 ~~~g~--------------~~~A~~~~~~m~~ 471 (521)
...|+ +++|.+++++..+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 77766 4556666666544
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.86 E-value=0.00034 Score=66.37 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=81.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC
Q 009967 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391 (521)
Q Consensus 312 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (521)
....+...|++++|+..|+++.... +-+...+..+..++...|++++|...++++....+ .+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhC
Confidence 4556778899999999999999854 33556788888889999999999999999975554 45668889999999999
Q ss_pred CHHHHHHHHhhC-CCCCCHHHHHHHH
Q 009967 392 RFKEAKEFLYDL-PFDPGIGFWKALL 416 (521)
Q Consensus 392 ~~~~A~~~~~~~-~~~~~~~~~~~l~ 416 (521)
++++|...|++. ...|+......++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999884 3466655444443
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.0009 Score=61.18 Aligned_cols=135 Identities=17% Similarity=0.175 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA-CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385 (521)
Q Consensus 307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 385 (521)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+..+ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 357777777777778888888888887543 2233344433333 3335667778888888876655 56677888888
Q ss_pred HHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967 386 LLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444 (521)
Q Consensus 386 ~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 444 (521)
.+.+.|+.+.|..+|++.. .-|. ...|...+..-...|+.+.+..+.+++.+..|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 8888888888888888742 2222 248888888888888888888888888888775433
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.0046 Score=50.49 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=98.7
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC---HHHH
Q 009967 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG---IGFW 412 (521)
Q Consensus 337 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~ 412 (521)
+.|+...-..|..+....|+..+|...|++.. ...+-.|+.+...+.++....+++..|...++++. .+|+ +...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 35666666677778888888888888888874 55566677788888888888888888888888742 2222 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 413 KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
-.+...+...|.+..|+..|+.++...| ++.....++..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4556678888899999999999988888 777777778888888888777665555443
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=4.9e-05 Score=55.27 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=34.2
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967 319 NGRGEEAIEFFERMRINGI-RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAK 397 (521)
Q Consensus 319 ~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 397 (521)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..++++. ...+ .+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~~--~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLDP--SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THHH--CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCHHHHH
Confidence 3455555555555554321 012223333455555555555555555441 1111 11222333345555555555555
Q ss_pred HHHh
Q 009967 398 EFLY 401 (521)
Q Consensus 398 ~~~~ 401 (521)
++++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 167
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.80 E-value=9.2e-05 Score=52.18 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=51.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
..|...++++.|.+.+++++..+|+++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4678889999999999999999999999999999999999999999999999886543
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00067 Score=57.18 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH
Q 009967 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN--GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383 (521)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 383 (521)
...+..+...+...|++++|...|++..+....+. ...+..+..++...|++++|...++++....+ .+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHH
Confidence 34566677777788888888888888776432222 34677777788888888888888888864443 245566677
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967 384 VDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 457 (521)
..+|...|+...+..-++.. ...+++|.+.++++.+.+|++ +..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 77777777766555332221 123677888999988888866 344444444333
No 169
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=3.3e-05 Score=43.75 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhHHCCC
Q 009967 74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNI 104 (521)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 104 (521)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888999999999999999988888764
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0012 Score=60.61 Aligned_cols=85 Identities=9% Similarity=0.098 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHhhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 009967 388 SRSGRFKEAKEFLYDL-PF-----DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461 (521)
Q Consensus 388 ~~~g~~~~A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 461 (521)
.+.|++..|.+.|.+. .+ +|+...|.....+..+.|+..+|+.-.+++..++|.-...|..-+.++...++|++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666552 22 23333444455555666666666666666666666556666666666666666666
Q ss_pred HHHHHHHHHhC
Q 009967 462 VSNIRREMKEK 472 (521)
Q Consensus 462 A~~~~~~m~~~ 472 (521)
|.+-+++..+.
T Consensus 340 AV~d~~~a~q~ 350 (486)
T KOG0550|consen 340 AVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHhh
Confidence 66666665443
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.0016 Score=64.71 Aligned_cols=138 Identities=11% Similarity=0.002 Sum_probs=68.9
Q ss_pred CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhh--------ccHHHHHHHHHHchH
Q 009967 304 RNIVTWNAVICGYAQ--NG---RGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHT--------GLVEKGYSYFSQAKL 369 (521)
Q Consensus 304 ~~~~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 369 (521)
.+...|...+.+... .+ +.+.|..+|++..+. .|+-. .+..+..++... .++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455667766666433 22 366777777777764 35532 333332222111 122233333333221
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 370 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 443 (521)
......++..|.++.......|++++|...+++. ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 1112233345555555555556666666666552 2345555555555556666666666666666666666444
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.00039 Score=58.38 Aligned_cols=94 Identities=9% Similarity=-0.101 Sum_probs=73.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 450 (521)
....+..++..+...|++++|...+++.. ..|+ ..++..+...+...|++++|+..+++++...|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34456777778888888888888887742 2222 347888888899999999999999999999998888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHH
Q 009967 451 NALS-------VAGKWDNVSNIRREM 469 (521)
Q Consensus 451 ~~~~-------~~g~~~~A~~~~~~m 469 (521)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888666666553
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.005 Score=54.85 Aligned_cols=172 Identities=11% Similarity=0.015 Sum_probs=100.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 009967 281 LISFYAKCGSMEDSLLVFDKLTE--RNIV----TWNAVICGYAQNGRGEEAIEFFERMRINGI-RPNGVTLLGLLWACNH 353 (521)
Q Consensus 281 l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~ 353 (521)
....+.+.|++++|.+.|+.+.. |+.. ..-.++.++.+.+++++|...+++..+... .|+. -+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhh
Confidence 44455667778888877777764 3322 123455667777888888888888776421 1222 22222222211
Q ss_pred --h------------------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHH
Q 009967 354 --T------------------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWK 413 (521)
Q Consensus 354 --~------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 413 (521)
. .....|...|+.++...| +. .-..+|..-+..+...- ...--
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP---~S-------------~ya~~A~~rl~~l~~~l-a~~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP---NS-------------QYTTDATKRLVFLKDRL-AKYEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc---CC-------------hhHHHHHHHHHHHHHHH-HHHHH
Confidence 1 112344455555554443 21 12223332222221000 00111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 414 ALLGGCQIHSNVELGEFAARRILALDPE---DVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
.+...|.+.|.+..|+.-++.+++..|+ .+.++..+..+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3445588999999999999999998887 45677888999999999999999887654
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.00045 Score=63.42 Aligned_cols=186 Identities=17% Similarity=0.174 Sum_probs=107.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCH--HHHH
Q 009967 281 LISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRI----NGIRPNG--VTLL 345 (521)
Q Consensus 281 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p~~--~~~~ 345 (521)
....|-..|++++|.+.|.+..+ .+ ...|.....+|.+. ++++|...+++... .| .|+. ..+.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~ 118 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 34445555555555555544432 11 12333444444333 67777777666543 33 2222 2556
Q ss_pred HHHHHHHhh-ccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC---C-----CCCHH-H
Q 009967 346 GLLWACNHT-GLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLYDLP---F-----DPGIG-F 411 (521)
Q Consensus 346 ~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~~~~~-~ 411 (521)
.+...|... |+++.|.+.|+++..-...... ..++..+...+.+.|++++|.++|+++. . +.+.. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 666778787 8999999999887643221112 2356778889999999999999998742 1 11222 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHhc--CChHHHHHHHHH
Q 009967 412 WKALLGGCQIHSNVELGEFAARRILALDPE-----DVSSYVMLSNALSVA--GKWDNVSNIRRE 468 (521)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 468 (521)
+-..+-.+...||...|...+++....+|. ...+...++.++-.. ..+++|+.-|+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 233344567789999999999999998875 234556667776543 445566655554
No 175
>PRK15331 chaperone protein SicA; Provisional
Probab=97.76 E-value=0.00062 Score=54.88 Aligned_cols=88 Identities=15% Similarity=0.057 Sum_probs=75.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 009967 384 VDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 461 (521)
..-+...|++++|..+|+-+. ..-+...|..|..++-..++++.|+..|..+..++++||..+...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 334557899999999998753 244566788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 009967 462 VSNIRREMKE 471 (521)
Q Consensus 462 A~~~~~~m~~ 471 (521)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.74 E-value=0.0003 Score=52.22 Aligned_cols=79 Identities=18% Similarity=0.074 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHCCC-CCChhhHHHHHHHHcCCC--------ChHHHHHHHHHHHHhCCCCcHHHHH
Q 009967 77 TTIIGRFAKQHHYEEAIYLFSRMLLLNI-RPSEFTFGSVIPSSTALE--------DLNLGKQLHAWATKVGLQSNVFVGS 147 (521)
Q Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 147 (521)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456677778999999999999999999 899999999999866443 2345788999999999999999999
Q ss_pred HHHHHHHc
Q 009967 148 AILDLYIK 155 (521)
Q Consensus 148 ~l~~~~~~ 155 (521)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988764
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00042 Score=51.37 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=42.3
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHH
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVE 426 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~ 426 (521)
..+...|++++|...++.+....+ .+...+..+..++...|++++|.+.++... . +.+...+..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 334444455555555544432221 122334444445555555555555554421 1 122234455555555556666
Q ss_pred HHHHHHHHHHhcCC
Q 009967 427 LGEFAARRILALDP 440 (521)
Q Consensus 427 ~A~~~~~~~~~~~p 440 (521)
.|...+.++.+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666655544
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.72 E-value=0.00018 Score=49.33 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967 383 MVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 443 (521)
+...+.+.|++++|.+.|+++. ..| +...+..+..++...|++++|...|+++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788899999999988853 345 455888888889999999999999999999999765
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.009 Score=55.12 Aligned_cols=80 Identities=11% Similarity=-0.090 Sum_probs=40.1
Q ss_pred HcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHH
Q 009967 118 STALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDAL 194 (521)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 194 (521)
+.+..++..|+..+....+.. +.+...|..-+..+...|++++|.--.++-.. .......-.-+++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 344456666666666666654 33455555555666666666666554433332 11222233333444444444444
Q ss_pred HHHh
Q 009967 195 KLFQ 198 (521)
Q Consensus 195 ~~~~ 198 (521)
+.++
T Consensus 138 ~~~~ 141 (486)
T KOG0550|consen 138 EKLK 141 (486)
T ss_pred HHhh
Confidence 4444
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00022 Score=62.72 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=75.8
Q ss_pred HHHHhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967 385 DLLSRSGRFKEAKEFLYD-LPFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462 (521)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 462 (521)
.-+.+.+++.+|+..|.+ +.+.| |...|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345678899999999987 44554 5667777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 009967 463 SNIRREMK 470 (521)
Q Consensus 463 ~~~~~~m~ 470 (521)
++.|++..
T Consensus 169 ~~aykKaL 176 (304)
T KOG0553|consen 169 IEAYKKAL 176 (304)
T ss_pred HHHHHhhh
Confidence 99998854
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=7.6e-05 Score=42.22 Aligned_cols=30 Identities=50% Similarity=0.865 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGI 337 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 337 (521)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877653
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.60 E-value=0.057 Score=49.68 Aligned_cols=273 Identities=15% Similarity=0.122 Sum_probs=173.6
Q ss_pred CCCHHHHHHHHhhCC---CCChhHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhhcchHHH
Q 009967 187 RERFEDALKLFQEMP---HRNVVSWNAMIG--GYSQTGRNEEAVNLFIEMLREGLVPNHST--LPCAIIAAANIAALGMG 259 (521)
Q Consensus 187 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a 259 (521)
.|+-..|.++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |.... +..+.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 344445544444332 234444433433 334467888888888877652 32221 22333334566777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChh--HHHHHHHHHH---HcCChHHHHHHH
Q 009967 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNIV--TWNAVICGYA---QNGRGEEAIEFF 329 (521)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~---~~~~~~~A~~~~ 329 (521)
..+-+.....-+. -.....+.+...+..|+|+.|+++++.-.+ +++. .-..|+.+-. -.-+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 7777776665544 355677788888999999999999886553 4442 2222332221 123566666666
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH--HHH--HHHhhCC
Q 009967 330 ERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK--EAK--EFLYDLP 404 (521)
Q Consensus 330 ~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~--~~~~~~~ 404 (521)
.+..+ +.||-. .-..-..++.+.|+..++-.+++.+- +.. |.+.++...+ +.+.|+.. ... +-++.|+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW-K~e--PHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW-KAE--PHPDIALLYV--RARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH-hcC--CChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC
Confidence 65554 456644 33344567899999999999999886 333 6665554333 34556532 222 1234454
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 009967 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA-GKWDNVSNIRREMKEK 472 (521)
Q Consensus 405 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 472 (521)
+.+..+...+..+-...|++..|..-.+.+.+..| ...+|..+++.-... |+-.+++..+-+.++.
T Consensus 326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 44566777788888889999999999999999999 778888999887765 9999999999886654
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0015 Score=59.82 Aligned_cols=129 Identities=13% Similarity=0.138 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 009967 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR-SGRFKEAKEFLYDLP--FDPGIGFWKALLGG 418 (521)
Q Consensus 342 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 418 (521)
.+|..++....+.+..+.|+.+|.++++... .+..+|...+..-.+ .++.+.|.++|+... ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888888899999999999999973333 344556666666444 567777999999842 36677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 419 CQIHSNVELGEFAARRILALDPEDV---SSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+...++.+.|..+|++++..-|.+. .+|..++..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999766544 58999999999999999999999888764
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.56 E-value=0.02 Score=51.02 Aligned_cols=179 Identities=15% Similarity=0.038 Sum_probs=97.1
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhh----HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHH
Q 009967 73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT----FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148 (521)
Q Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (521)
...+-.....+.+.|++++|++.|+.+...- |+... .-.+..++.+.++++.|...++...+.........+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333345556677899999999999998753 33322 13455667889999999999999888642222222322
Q ss_pred HHHHHHc--CC---------------CHH---HHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHH
Q 009967 149 ILDLYIK--LS---------------SIE---EATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSW 208 (521)
Q Consensus 149 l~~~~~~--~g---------------~~~---~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 208 (521)
.+.+.+. .+ |.. .|...|+.+ +..|=...-..+|...+..+...-...-
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-----------i~~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-----------VRGYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH-----------HHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 3333221 11 111 222333333 3333333334444444444432222222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhhcchHHHHHHHH
Q 009967 209 NAMIGGYSQTGRNEEAVNLFIEMLREG--LVPNHSTLPCAIIAAANIAALGMGKSFHA 264 (521)
Q Consensus 209 ~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 264 (521)
..+...|.+.|.+..|..-++.+.+.- .+.....+..+..++...|..+.+..+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 345667888888888888888888752 22233334445555555555555554443
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.56 E-value=0.0019 Score=48.11 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhhc--------chHHHHHHHHHHHHcCCCCChhH
Q 009967 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPNHSTLPCAIIAAANIA--------ALGMGKSFHACAVKFLGKLDVFV 277 (521)
Q Consensus 207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 277 (521)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ..-....+++.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 999999999999887764 23456778889999999999999
Q ss_pred HHHHHHHHHh
Q 009967 278 GNSLISFYAK 287 (521)
Q Consensus 278 ~~~l~~~~~~ 287 (521)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.53 E-value=0.0048 Score=49.64 Aligned_cols=90 Identities=10% Similarity=-0.072 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389 (521)
Q Consensus 310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (521)
-.+...+...|++++|.++|+-+.... +-+...|..|..++...|++++|...|.....-.+ .++..+-.+..++..
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHH
Confidence 333444445555555555555544421 11223444444445555555555555555542222 233444445555555
Q ss_pred cCCHHHHHHHHhh
Q 009967 390 SGRFKEAKEFLYD 402 (521)
Q Consensus 390 ~g~~~~A~~~~~~ 402 (521)
.|+.+.|.+.|+.
T Consensus 116 lG~~~~A~~aF~~ 128 (157)
T PRK15363 116 CDNVCYAIKALKA 128 (157)
T ss_pred cCCHHHHHHHHHH
Confidence 5555555554443
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.53 E-value=0.0072 Score=60.11 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=98.1
Q ss_pred CCCCCHHHHHHHHHHHHh-----hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHhh
Q 009967 336 GIRPNGVTLLGLLWACNH-----TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS--------GRFKEAKEFLYD 402 (521)
Q Consensus 336 ~~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 402 (521)
+.+.+...|..++++... .++.+.|..+|+++.+..+ -....|..+..++... ++...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345677888888887432 2347799999999985554 2334555555544332 123444444444
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 403 L---P-FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 403 ~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
. . ...+...+..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.+++......
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2 1 234556777777777788999999999999999999 688999999999999999999999999776543
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.02 Score=46.85 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=95.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH
Q 009967 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383 (521)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 383 (521)
|++..-..|..+....|++.+|...|++...--..-|......+.++....++...|...++.+.+..+-.-++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 55556666778888888888999888887765445577778888888888888888888888886555444455556677
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 384 VDLLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
.+.|...|++.+|+..|+.. ...|+...-......+.++|+.+++..-+..+.+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88888888888888888764 3456666555555556677766666554444433
No 189
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.00046 Score=63.15 Aligned_cols=251 Identities=10% Similarity=0.083 Sum_probs=139.9
Q ss_pred HHHHhcCChHHHHHHHHHhHHCCCCCCh----hhHHHHHHHHcCCCChHHHHHHHHHHHH----hCCC-CcHHHHHHHHH
Q 009967 81 GRFAKQHHYEEAIYLFSRMLLLNIRPSE----FTFGSVIPSSTALEDLNLGKQLHAWATK----VGLQ-SNVFVGSAILD 151 (521)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~ 151 (521)
.-+++.|+....+.+|+...+.| .-|. ..|..+-++|.-.+++++|+++...=+. .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 35788999999999999998876 3343 3466677777788888888887543211 1110 11222334455
Q ss_pred HHHcCCCHHHHHHHhhcCCC---------CCchhHHHHHHHHHcCCC--------------------HHHHHHHHhhCCC
Q 009967 152 LYIKLSSIEEATRVFEDTHN---------PNVVSYTTMICGLLKRER--------------------FEDALKLFQEMPH 202 (521)
Q Consensus 152 ~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~~ 202 (521)
.+--.|.+++|.....+-.. .....+..+.+.|...|+ ++.|.++|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 55556777777665433222 233445566666665543 2333333332111
Q ss_pred ---------CChhHHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CCChhhHHHHHHHHHhhcchHHHHHHHHHHH-
Q 009967 203 ---------RNVVSWNAMIGGYSQTGRNEEAVNLFIEML----REGL-VPNHSTLPCAIIAAANIAALGMGKSFHACAV- 267 (521)
Q Consensus 203 ---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 267 (521)
..-..|..|.+.|.-.|+++.|+..-+.-+ +-|- ......+..+..++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 112345666666666777777766543321 1121 1122345556666666777777766665533
Q ss_pred ---HcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 009967 268 ---KFLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---------RNIVTWNAVICGYAQNGRGEEAIEFFERM 332 (521)
Q Consensus 268 ---~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m 332 (521)
+.|-. .......+|.+.|.-..++++|+.++.+-.. -....+-+|..+|...|..++|+.+.+.-
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 22221 2334455566666666677777776665331 22345666777777777777776665543
No 190
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.44 E-value=0.0011 Score=55.81 Aligned_cols=98 Identities=9% Similarity=0.112 Sum_probs=80.7
Q ss_pred HHHHhccC--CCCCcccHHHHHHHHHhc-----CChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC-----------
Q 009967 61 VHQVFDEV--PDLNVVSATTIIGRFAKQ-----HHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE----------- 122 (521)
Q Consensus 61 A~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 122 (521)
-...|+.. ...+..+|..+++.+.+. |..+-....+..|.+-|+.-|..+|+.|+..+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556654 456788899999888754 778888889999999999999999999999865422
Q ss_pred -----ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC
Q 009967 123 -----DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158 (521)
Q Consensus 123 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 158 (521)
+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345689999999999999999999999999987764
No 191
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.44 E-value=0.11 Score=48.86 Aligned_cols=87 Identities=6% Similarity=0.033 Sum_probs=66.4
Q ss_pred ccchHHHHHHHhhcCCCchh----hhhhcccCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHhH
Q 009967 28 LIETQKASVQKLETPAIRTD----SVSCGSESDKFSSVHQVFDEVPDLNV---VSATTIIGRFAKQHHYEEAIYLFSRML 100 (521)
Q Consensus 28 ~~~~~~~~~~~~~~g~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 100 (521)
+++.-++.+.+...+ -... |++.|..+|..++.+++++.+..|-+ .+|..-+++-...++++....+|.++.
T Consensus 25 ~~D~lrLRerIkdNP-tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 25 HGDELRLRERIKDNP-TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred CchHHHHHHHhhcCc-hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 445557888887764 1221 99999999999999999999998754 478888888888899999999999998
Q ss_pred HCCCCCChhhHHHHHHH
Q 009967 101 LLNIRPSEFTFGSVIPS 117 (521)
Q Consensus 101 ~~~~~p~~~~~~~ll~~ 117 (521)
..... ...|...+.-
T Consensus 104 ~k~l~--ldLW~lYl~Y 118 (660)
T COG5107 104 KKSLN--LDLWMLYLEY 118 (660)
T ss_pred hhhcc--HhHHHHHHHH
Confidence 76544 4445444443
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.40 E-value=0.0017 Score=58.33 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHH
Q 009967 380 YACMVDLLSRSGRFKEAKEFLYDLP-FDPGI----GFWKALLGGCQIHSNVELGEFAARRILALDPED---VSSYVMLSN 451 (521)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 451 (521)
|..-+..+.+.|++++|...|+.+. ..|+. ..+..+...|...|++++|...|++++...|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444445566777766666642 23332 345556666777777777777777777766653 455555677
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 009967 452 ALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~ 472 (521)
++...|++++|..+|+++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
No 193
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.40 E-value=0.00015 Score=41.76 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 009967 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 464 (521)
.|+++++++|+++.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788999999999999999999999999999863
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.38 E-value=0.00052 Score=47.62 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHS-NVELGEFAARRILALDP 440 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 440 (521)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456677777777777777777777763 2344 3447777777777777 68888888888888776
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.36 E-value=0.01 Score=51.48 Aligned_cols=165 Identities=18% Similarity=0.119 Sum_probs=92.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 009967 280 SLISFYAKCGSMEDSLLVFDKLTE--RNI----VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV--TLLGLLWAC 351 (521)
Q Consensus 280 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~ 351 (521)
.....+.+.|++.+|.+.|+.+.. |+. ...-.++.++.+.|+++.|...++++.+.- |+.. -+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHH
Confidence 344556677888888888887764 322 245566777788888888888888877632 3321 111111111
Q ss_pred H--h-----------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 009967 352 N--H-----------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGG 418 (521)
Q Consensus 352 ~--~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 418 (521)
+ . .+...+|...|+.+....| ......+|...+..+. ..-...--.++..
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP----------------~S~y~~~A~~~l~~l~-~~la~~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP----------------NSEYAEEAKKRLAELR-NRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T----------------TSTTHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCc----------------CchHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1 1 1223455555555554443 2222333333332221 0000011224556
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHH
Q 009967 419 CQIHSNVELGEFAARRILALDPEDV---SSYVMLSNALSVAGKWDNVS 463 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 463 (521)
|.+.|.+..|...++.+++..|+++ .+...++.+|.+.|..+.|.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8899999999999999999999854 46777889999999988554
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.00067 Score=62.10 Aligned_cols=250 Identities=16% Similarity=0.103 Sum_probs=160.2
Q ss_pred HcCCCChHHHHHHHHHHHHhCCCCcH----HHHHHHHHHHHcCCCHHHHHHHhhcCCC---------CCchhHHHHHHHH
Q 009967 118 STALEDLNLGKQLHAWATKVGLQSNV----FVGSAILDLYIKLSSIEEATRVFEDTHN---------PNVVSYTTMICGL 184 (521)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~ 184 (521)
+++.|+.+..+.+|+..++.| ..|. .+|..|.++|.-.+++++|.++-..-.. ....+...|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 688999999999999999988 3343 4577788888888999999987543221 2334455566666
Q ss_pred HcCCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH--
Q 009967 185 LKRERFEDALKLFQEMPH---------RNVVSWNAMIGGYSQTGR--------------------NEEAVNLFIEMLR-- 233 (521)
Q Consensus 185 ~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~-- 233 (521)
--.|.+++|.-+-.+-.. ....++..+...|...|+ ++.|.++|.+=++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 677888877655433221 123455556666665542 2344444443221
Q ss_pred --CC-CCCChhhHHHHHHHHHhhcchHHHHHHHHHHH----HcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhcC---
Q 009967 234 --EG-LVPNHSTLPCAIIAAANIAALGMGKSFHACAV----KFLGK-LDVFVGNSLISFYAKCGSMEDSLLVFDKLT--- 302 (521)
Q Consensus 234 --~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 302 (521)
.| --..-..|..+-..|.-.|+++.|....+.-+ +.|-. .....+..+.+++.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11 00112334445555566678888877665533 23322 123456778888999999999999888653
Q ss_pred ----CCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967 303 ----ERN--IVTWNAVICGYAQNGRGEEAIEFFERMRI----N-GIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 303 ----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
++. ..+..+|...|.-..++++|+.++.+-.. . ...-....+-+|..++...|..++|..+.+...
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 222 34666788888888889999888876322 1 112345578888889999999998888776653
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.34 E-value=0.003 Score=60.21 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=51.2
Q ss_pred CCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHH
Q 009967 237 VPNHSTLPCAIIAAANIAALGMGKSFHACAVKF--LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWN 310 (521)
Q Consensus 237 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 310 (521)
+.+...+..++..+....+++.+..++...... ....-..+..++++.|.+.|..+.+..+++.=.. ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444555555555555555554444433 1112223333445555555554444444444332 4444555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350 (521)
Q Consensus 311 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 350 (521)
.+|..+.+.|++..|.++..+|...+...+..|+..-+.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 5555555555555555444444444433344443333333
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00041 Score=47.97 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=26.3
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
..|++++|.++|+++....+ -+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556666666666554443 24444555555555555555555555554
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.32 E-value=0.006 Score=58.24 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHH
Q 009967 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE--GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNS 280 (521)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (521)
-+......+++.+....+.+.+..++.+.+.. ....-+.|..++++.|...|..+.+..++..=..-|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35566777777777778888888888888765 2333445667889999999999999999998888999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHc
Q 009967 281 LISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQN 319 (521)
Q Consensus 281 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~ 319 (521)
|++.+.+.|++..|.++...|.. .+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999988887763 3445555445444443
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.23 Score=49.86 Aligned_cols=353 Identities=14% Similarity=0.104 Sum_probs=184.8
Q ss_pred HHHhcCChHHHHHHHHHhH--------HCCCCCChhhHHH-----HHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHH
Q 009967 82 RFAKQHHYEEAIYLFSRML--------LLNIRPSEFTFGS-----VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA 148 (521)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (521)
++.+..++++-..+-++.. .-|++.+..-|.. ++.-+...+.+..|+++-..+...-... ..+|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 3445556666555544432 3477777776654 3445666778888888877765322122 566777
Q ss_pred HHHHHHcCCC---HHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCC--------ChhHHHHHHHHH
Q 009967 149 ILDLYIKLSS---IEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPHR--------NVVSWNAMIGGY 215 (521)
Q Consensus 149 l~~~~~~~g~---~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~ 215 (521)
...-+.+..+ -+.+..+=+++.. ....+|..+.+.....|+.+-|..+++.=+.. +..-+...+.-+
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 7777776532 3333444444444 45567888888888899999999988866542 233455566667
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 009967 216 SQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL 295 (521)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 295 (521)
...|+.+-...++-.+.+.- +...|... ..+.-.|..+|.+..+..-. ..+-+.|-+..+... .
T Consensus 557 ies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~-~ 620 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQA-L 620 (829)
T ss_pred HhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhhhHHHHHHHHhhch------hhhhhhhhcccchhh-h
Confidence 77788777777766665431 11111111 11222333334333332111 011122222222221 1
Q ss_pred HHHhh-c------CCCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhccH
Q 009967 296 LVFDK-L------TERNIVTWNAVICGYAQNGR----------GEEAIEFFERMRI-NGIRPNGVTLLGLLWACNHTGLV 357 (521)
Q Consensus 296 ~~~~~-~------~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~ 357 (521)
..|.. - .++-..........+.+... ..+-+.+.+.+.. .|.....-+.+--+.-+...|+.
T Consensus 621 a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~ 700 (829)
T KOG2280|consen 621 ASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQN 700 (829)
T ss_pred hhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccch
Confidence 11111 0 01111112222222332221 1111222222222 22223333444445555666777
Q ss_pred HHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
.+|.++-.+.+ .|+...|-.-+.+++..++|++-+++-+..+ . +..|.-...+|.+.|+.++|..++-+.-.
T Consensus 701 k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-s--PIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 701 KRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-S--PIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred HHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-C--CCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 77777765542 2566677777777777777777777766654 1 34555666777777777777777655422
Q ss_pred cCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967 438 LDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 438 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (521)
. .....+|.+.|++.+|.++--
T Consensus 773 l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 773 L--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred h--------HHHHHHHHHhccHHHHHHHHH
Confidence 1 155666777777777766543
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.31 E-value=0.00055 Score=42.38 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 009967 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451 (521)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 451 (521)
.+|..+..+|...|++++|++.|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999999888764
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.30 E-value=0.0014 Score=61.81 Aligned_cols=65 Identities=11% Similarity=-0.060 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS---SYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+...|+.+..+|...|++++|+..|+++++++|++.. +|+.++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456777777777777777777777777777776663 3777777777777777777777776664
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.30 E-value=0.0064 Score=47.05 Aligned_cols=58 Identities=16% Similarity=0.010 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILALDPE---DVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
.+..+..++...|++++|+.++++.....|+ +......++.++...|+.++|+..+-.
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3334444555555555555555555555554 344444455555555666655555443
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.27 E-value=0.15 Score=50.10 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=53.6
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 127 (521)
-+..|...|.+++|.++---.. ...-|.-+...-..+=+++-|.+.|.+..... | =+.
T Consensus 562 ~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~-------~-------------L~l 619 (1081)
T KOG1538|consen 562 PMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVRDLR-------Y-------------LEL 619 (1081)
T ss_pred cchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhccH-------H-------------HHH
Confidence 3455667777777764422111 12345555555555555666666555543211 1 122
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 009967 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169 (521)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 169 (521)
..-++++++.|-.|+... +...++-.|++.+|-++|.+-
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 334566777776677654 345666778888887776544
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.22 E-value=0.015 Score=45.08 Aligned_cols=91 Identities=24% Similarity=0.265 Sum_probs=60.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHH
Q 009967 312 VICGYAQNGRGEEAIEFFERMRINGIRPNG--VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLS 388 (521)
Q Consensus 312 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 388 (521)
...++-..|+.++|+.+|++....|+.... ..+..+...+...|++++|..+++......+-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666778888888888888887765442 3566666777888888888888888765543211 2222333445667
Q ss_pred hcCCHHHHHHHHhh
Q 009967 389 RSGRFKEAKEFLYD 402 (521)
Q Consensus 389 ~~g~~~~A~~~~~~ 402 (521)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888888776643
No 206
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.19 E-value=0.013 Score=49.18 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN--HSTLPCAIIAAANIAALGMGKSFHACAVK 268 (521)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 268 (521)
..|..+...+...|++++|+..|+........|. ..++..+..++...|+.+.|...++.+.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555566666666666666666654321111 12333344444444444444444444443
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.23 Score=46.18 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=15.6
Q ss_pred cHHHHHHHHHhcCChHHHHHHHH
Q 009967 75 SATTIIGRFAKQHHYEEAIYLFS 97 (521)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~ 97 (521)
+|..+...-...|+.+-|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 45666666667777777777665
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.12 E-value=0.088 Score=49.35 Aligned_cols=165 Identities=15% Similarity=0.068 Sum_probs=103.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTER-------NIVTWNAVICGYAQ---NGRGEEAIEFFERMRINGIRPNGVT 343 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~ 343 (521)
+..+...++-.|-...+++..+++++.+... ....-....-++.+ .|+.++|+.++..+....-.++..|
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3344445666788888999999999888763 12222334445556 7899999999998666556788888
Q ss_pred HHHHHHHHHh---------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC-HH---HHHHHH---hh-----
Q 009967 344 LLGLLWACNH---------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR-FK---EAKEFL---YD----- 402 (521)
Q Consensus 344 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~----- 402 (521)
+..+.+.|-. ....++|...|.+.- .+.|+...=-.++..+...|. .+ +..++- ..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 8888777632 234678888887654 222443221122223333332 11 222222 11
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 403 --LPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 403 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
.....+-..+..++.++.-.||.+.|.+.++++....|+
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 011345556777888888899999999999999988764
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.09 E-value=0.13 Score=44.55 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-hHHHHHHHHHH
Q 009967 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACMVDLLS 388 (521)
Q Consensus 310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 388 (521)
..++.-|=...-..+|...+..+... .- ..-..+..-|.+.|.+..|..-++.+.+..+-.+.. .....++.+|.
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 33444444444455555554444331 00 111224455777888888888888887666533322 24556677777
Q ss_pred hcCCHHHHH
Q 009967 389 RSGRFKEAK 397 (521)
Q Consensus 389 ~~g~~~~A~ 397 (521)
+.|..+.+.
T Consensus 190 ~l~~~~~a~ 198 (203)
T PF13525_consen 190 KLGLKQAAD 198 (203)
T ss_dssp HTT-HHHHH
T ss_pred HhCChHHHH
Confidence 777766443
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.08 E-value=0.012 Score=52.81 Aligned_cols=102 Identities=9% Similarity=-0.001 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALL 416 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 416 (521)
.|...+....+.|++++|...|+.+...++-.+- +..+..+..+|...|++++|...|+.+. ..|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444443345557777777777777655543221 3456667777777777777777777653 1222 33455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967 417 GGCQIHSNVELGEFAARRILALDPEDVS 444 (521)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 444 (521)
..+...|+.+.|...|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6677788888888888888888886553
No 211
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0057 Score=56.52 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+..+..++.+.+++..|++...+.++.+|+|..+++.-+.+|...|+++.|+..|+++.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555555555555555544
No 212
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.07 E-value=0.35 Score=47.41 Aligned_cols=180 Identities=12% Similarity=0.078 Sum_probs=122.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERN---IVTWNAVICGYAQNGRGEEAIEFFERMRINGIR--PNGVTLLGLL 348 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll 348 (521)
+..+|...+......|+.+.+.-+|++..-|- ...|-..+.-.-..|+.+-|..++....+-..+ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~- 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR- 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH-
Confidence 45677788888889999999999999987542 234555555555569999999888876664332 222222222
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCChh-HHHHHHHHHHhcCCHHHHH---HHHhhCC-C--CCCHH--HHHHHHHH-
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAK---EFLYDLP-F--DPGIG--FWKALLGG- 418 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~-~--~~~~~--~~~~l~~~- 418 (521)
.+...|+++.|..+++.+.++. |+.. .-..-+....+.|..+.+. +++.... . .+... .+......
T Consensus 375 -f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 -FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred -HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 2456789999999999997555 4432 2333455667888888887 4444432 1 22222 22222222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 5667899999999999999999999999999998877654
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.033 Score=48.29 Aligned_cols=132 Identities=11% Similarity=-0.021 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh-----HHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE-----HYACM 383 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l 383 (521)
.+.++..+.-.|.+.-....+++..+..-+.+..-...|++.-.+.||.+.|..+|++..+..+ ..+.. +....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhh
Confidence 3444444445555666666666665543333444555555555666666666666665432211 12221 22222
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 384 VDLLSRSGRFKEAKEFLYDLPF--DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
...|.-++++..|...+.++.. +.++...|.-+-+..-.|+...|++..+.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3334445555555555555432 223333333333344455666666666666665553
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.01 E-value=0.0034 Score=44.02 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=50.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 009967 384 VDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVM 448 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 448 (521)
...|.+.+++++|.++++.+. ..| ++..|......+...|++++|.+.|+++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356788888999988888753 344 45577778888899999999999999999999977665443
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.0033 Score=51.35 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCC
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK-----EKGMTRVP 478 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~ 478 (521)
....++..+...|++++|++.+++++..+|-+...|..++.+|.+.|+..+|.++|+++. +.|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455567778889999999999999999999999999999999999999999999999874 45777654
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.99 E-value=0.3 Score=45.22 Aligned_cols=299 Identities=14% Similarity=0.089 Sum_probs=163.9
Q ss_pred ChHHHHHHHHHhHHCCCCCChhhHHHHHHHHc--CCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHH--HHcCCCHHHHH
Q 009967 88 HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST--ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL--YIKLSSIEEAT 163 (521)
Q Consensus 88 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~ 163 (521)
.+..+.+.|..-+.. ..|..|-.++. -.|+-..|.+.-.+..+. +..|....-.|+.+ -.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 344555555544331 22444444433 456777776665554322 34444444444443 33579999999
Q ss_pred HHhhcCCC-CCchh--HHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 009967 164 RVFEDTHN-PNVVS--YTTMICGLLKRERFEDALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-L 236 (521)
Q Consensus 164 ~~~~~~~~-~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~ 236 (521)
+-|+.|.. |.... ...|.-.--+.|+.+.|.++-+.... | -...+.+.+...+..|+++.|+++++.-+... +
T Consensus 141 ~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 141 KKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred HHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 99999876 43332 22233333467888888887776654 2 34677888899999999999999998876543 3
Q ss_pred CCChhh--HHHHHHHHHh---hcchHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhH
Q 009967 237 VPNHST--LPCAIIAAAN---IAALGMGKSFHACAVKFLGKLDVF-VGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVT 308 (521)
Q Consensus 237 ~p~~~~--~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 308 (521)
.++..- -..++.+-.. ..+...|...-.+..+. .|+.. ....-..++.+.|+..++-.+++.+-+ |.+..
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 344321 1222222211 12334444444444433 33322 222334567777777777777777754 33332
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRI-NGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (521)
+.. ..+.+.|+ .+..-+++..+ ..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.
T Consensus 299 a~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI 371 (531)
T COG3898 299 ALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI 371 (531)
T ss_pred HHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence 222 22233343 34444444332 1234443 355556666667777777666555543 233666677766666
Q ss_pred HHhc-CCHHHHHHHHhh
Q 009967 387 LSRS-GRFKEAKEFLYD 402 (521)
Q Consensus 387 ~~~~-g~~~~A~~~~~~ 402 (521)
-... |+-.++...+.+
T Consensus 372 eeAetGDqg~vR~wlAq 388 (531)
T COG3898 372 EEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HhhccCchHHHHHHHHH
Confidence 5443 777777777665
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.99 E-value=0.0019 Score=46.04 Aligned_cols=61 Identities=7% Similarity=0.052 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILAL----DPE---DVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
+++.+...|...|++++|+..|++++++ +++ ...++..++.++...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666777777778888888888777753 222 245778888888888888888888887643
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.17 Score=44.17 Aligned_cols=123 Identities=12% Similarity=0.050 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----H
Q 009967 279 NSLISFYAKCGSMEDSLLVFDKLTER----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL-----W 349 (521)
Q Consensus 279 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll-----~ 349 (521)
+.++.++.-.|++.-....+++..+. ++.....+++.-.+.||.+.|...|++..+..-+.|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 33444444444554444444444432 23334444444445555555555555444322222222222222 1
Q ss_pred HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
.+..++++..|...+.++....+ .++...|.-.-++.-.|+..+|.+.++.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred heecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 23334445555555544443332 22222232222333344555555555544
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.014 Score=54.00 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 378 EHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
.++..|.-+|.+.+++..|++..++.. . ++|+...-.=..++...|+++.|+..|++++++.|.|..+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 357788999999999999999888742 2 66788888888999999999999999999999999999998999888887
Q ss_pred cCChHH-HHHHHHHHHhC
Q 009967 456 AGKWDN-VSNIRREMKEK 472 (521)
Q Consensus 456 ~g~~~~-A~~~~~~m~~~ 472 (521)
...+.+ ..++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 776655 48888888643
No 220
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.91 E-value=0.36 Score=44.88 Aligned_cols=109 Identities=9% Similarity=0.055 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 422 (521)
+.+..+.-|...|+...|.++-.+. .+ |+...|...+.+|+..++|++..++-.. +..+..|...+.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 5555566677888888888776544 43 7888899999999999999999887664 23446788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
|+..+|..+..++ | +..-+..|.+.|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888872 1 25667778899999998776544
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.80 E-value=0.014 Score=49.41 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=68.8
Q ss_pred HHHHhhC--CCCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh-------------
Q 009967 194 LKLFQEM--PHRNVVSWNAMIGGYSQ-----TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI------------- 253 (521)
Q Consensus 194 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 253 (521)
...|+.. ...+-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.+++.+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 34566777777777654 366777777777888888888888888888776431
Q ss_pred ---cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 009967 254 ---AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290 (521)
Q Consensus 254 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 290 (521)
.+.+-+.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1346778888888888888888888888888866553
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.80 E-value=0.14 Score=50.30 Aligned_cols=175 Identities=15% Similarity=0.070 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 009967 208 WNAMIGGYSQTGRN--EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285 (521)
Q Consensus 208 ~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (521)
++..=.+|.+..+. -+.+.-+++++++|-.|+... +...|+-.|.+.+|-++|.+- |.. +..+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHH
Confidence 34444555555443 344555667777777777543 334556667777766666532 211 2233344
Q ss_pred HhcCCHHHHHHHHhhcCC--------------CChhHHHHHHHHHHHcCChHHHHHHHHH------HHHCCC---CCCHH
Q 009967 286 AKCGSMEDSLLVFDKLTE--------------RNIVTWNAVICGYAQNGRGEEAIEFFER------MRINGI---RPNGV 342 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~A~~~~~~------m~~~~~---~p~~~ 342 (521)
.....++.|.+++..... .++.--.+....+...|+.++|..+.-+ +.+-+- ..+..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 444444444443332211 1111111223333444555555443221 111111 12233
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 404 (521)
+...+...+.+...+..|-++|.++- | ...+++.....++|++|..+-++.+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~g-------D---~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMG-------D---LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhc-------c---HHHHhhheeecccchHhHhhhhhCc
Confidence 44444444455555666666666552 1 2345666667777777777776665
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.062 Score=47.96 Aligned_cols=104 Identities=17% Similarity=0.059 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhC-CCCC-CHHHH
Q 009967 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG---RFKEAKEFLYDL-PFDP-GIGFW 412 (521)
Q Consensus 338 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~~~~ 412 (521)
+-|...|..|..+|...|+.+.|...|.+.....| +++..+..+..++.... ...++..+|+++ ..+| |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 44677899999999999999999999999876676 66667777777765543 456788888884 3344 45566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967 413 KALLGGCQIHSNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 443 (521)
..|...+...|++.+|...++.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 7777789999999999999999999887543
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.67 E-value=0.6 Score=44.14 Aligned_cols=402 Identities=12% Similarity=0.053 Sum_probs=211.8
Q ss_pred HHhccCCC-C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCC
Q 009967 63 QVFDEVPD-L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ 140 (521)
Q Consensus 63 ~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 140 (521)
++-+++.. | |..+|-.|+.-+..+|..++..+++++|..- .+--...|...+.+-....++..++.+|.+.+...+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 55566653 4 6789999999999999999999999999752 233455677777766667899999999999888654
Q ss_pred CcHHHHHHHHHHHHcCCC---------HHHHHHHhhcC--CCC-CchhHHHHHHH---HH------cCCCHHHHHHHHhh
Q 009967 141 SNVFVGSAILDLYIKLSS---------IEEATRVFEDT--HNP-NVVSYTTMICG---LL------KRERFEDALKLFQE 199 (521)
Q Consensus 141 ~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~--~~~-~~~~~~~li~~---~~------~~g~~~~a~~~~~~ 199 (521)
+...|...+.--.+.+. +-+|.++.-.. .+| ....|+..+.- .- ++.+++...+.+.+
T Consensus 108 -~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 108 -NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred -cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 45566655554443331 12222221111 112 23334443322 22 23345556666666
Q ss_pred CCC-C---------ChhHHHHHHHHHHh-------cCChHHHHHHHHHHHH--CCCCC----ChhhHHHHHHHH-H----
Q 009967 200 MPH-R---------NVVSWNAMIGGYSQ-------TGRNEEAVNLFIEMLR--EGLVP----NHSTLPCAIIAA-A---- 251 (521)
Q Consensus 200 ~~~-~---------~~~~~~~l~~~~~~-------~~~~~~a~~~~~~m~~--~~~~p----~~~~~~~ll~~~-~---- 251 (521)
+.. | |-..|..=++.... ..-+-.|...+++... .|... +..+++-+-+.. +
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 654 1 22222222211111 1124456666666544 23222 112222211100 0
Q ss_pred ------hh-----c--chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHH
Q 009967 252 ------NI-----A--ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQ 318 (521)
Q Consensus 252 ------~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 318 (521)
.. | ......-++++....- .....+|----..+...++-+.|.....+..+..+..---+-..|..
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~-~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel 345 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYF-YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYEL 345 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhh
Confidence 00 0 0001111111111110 01122222223334456777777777766554111100011111111
Q ss_pred cCChHHHHHHHHHH-----------------------------HHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchH
Q 009967 319 NGRGEEAIEFFERM-----------------------------RINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369 (521)
Q Consensus 319 ~~~~~~A~~~~~~m-----------------------------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 369 (521)
.++-+.....|+.. .-....--...|...+.+..+..-++.|+.+|-++.
T Consensus 346 ~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r- 424 (660)
T COG5107 346 VNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR- 424 (660)
T ss_pred cccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh-
Confidence 12222221111111 000001112345666777677777888999998886
Q ss_pred hCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Cch
Q 009967 370 EDP-GMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIGF-WKALLGGCQIHSNVELGEFAARRILALDPE--DVS 444 (521)
Q Consensus 370 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~ 444 (521)
+.| ..+++.++++++..++ .|+..-|-.+|+- |..-||... ....+..+...+|-..|..+|+..+..-.+ -..
T Consensus 425 k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~ 503 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKR 503 (660)
T ss_pred ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhH
Confidence 555 5677778888888664 5777888888876 443455543 345566677788888899999877663222 256
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 445 SYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+|..++..-..-|+...+..+=++|.
T Consensus 504 iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 504 IYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 78888888888888877766655553
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.89 Score=45.45 Aligned_cols=202 Identities=11% Similarity=0.078 Sum_probs=120.7
Q ss_pred CCChhhHHHHHHHHcCCCChHHHHHHHHHHHHh-CCCC--------cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCch
Q 009967 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV-GLQS--------NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV 175 (521)
Q Consensus 105 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 175 (521)
.|.+..|..+.......-.++.|+..|-..... |++. +...-.+-+. +--|.+++|+++|-++...|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 477888887777666656666666665544331 2211 1111111122 224778888888877765443
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 009967 176 SYTTMICGLLKRERFEDALKLFQEMPHR-----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250 (521)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 250 (521)
-|..+.+.|++-...++++.-... -..+|+.+...+.....|+.|.+.|..-.. ....+.++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecl 832 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECL 832 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHH
Confidence 345566677777777777664431 125677777878777778888777755322 12244555
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 009967 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFE 330 (521)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 330 (521)
.+..+++..+.+...+ +.+....-.+.+++...|--+.|.+.|-+-..|.. .+..|...+++.+|.++-+
T Consensus 833 y~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHH
Confidence 5555555544443332 23555666777888888888888887777665543 3455666777777777766
Q ss_pred HH
Q 009967 331 RM 332 (521)
Q Consensus 331 ~m 332 (521)
+.
T Consensus 903 ~~ 904 (1189)
T KOG2041|consen 903 RF 904 (1189)
T ss_pred hc
Confidence 54
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.59 E-value=0.062 Score=42.55 Aligned_cols=89 Identities=15% Similarity=0.062 Sum_probs=56.9
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHh
Q 009967 384 VDLLSRSGRFKEAKEFLYDLPF----DP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS---SYVMLSNALSV 455 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 455 (521)
.....+.|++++|.+.|+.+.. .| ...+--.++.++...|++++|...+++.+++.|.++. ++...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 3344466777777777776531 11 2234555677788888888888888888888887654 34444444555
Q ss_pred cCC---------------hHHHHHHHHHHHhC
Q 009967 456 AGK---------------WDNVSNIRREMKEK 472 (521)
Q Consensus 456 ~g~---------------~~~A~~~~~~m~~~ 472 (521)
... ..+|..-|+++++.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 444 56777777776654
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.49 E-value=0.53 Score=44.30 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHh---hccHHHHHHHHHHchHhCCCCCChhHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGI--RP-NGVTLLGLLWACNH---TGLVEKGYSYFSQAKLEDPGMLKPEHYAC 382 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 382 (521)
.-.++-+|....+++...++++.+..... .+ ....-....-++.+ .|+.++|.+++..+. .....+++.+|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l-~~~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL-ESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-hccCCCChHHHHH
Confidence 33555678899999999999999987411 11 11122233344556 899999999999854 3334578888888
Q ss_pred HHHHHHh---------cCCHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH---HHHH-hc---CC-
Q 009967 383 MVDLLSR---------SGRFKEAKEFLYD-LPFDPGIGFWKALLGGCQIHSN-VE---LGEFAA---RRIL-AL---DP- 440 (521)
Q Consensus 383 l~~~~~~---------~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-~~---~p- 440 (521)
+...|.. ....++|...|.+ ...+|+...=-.++..+...|. .+ +..++- .... +. .+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8877743 2247788888877 3445665432222222333332 22 222222 1111 11 12
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 441 EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 441 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
++...+.+++.++.-.|++++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 25667778999999999999999999999865
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.057 Score=48.02 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=65.8
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA---LLGGCQIHSNVEL 427 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~ 427 (521)
....|+...|...|.......+ -+...-..++.+|...|+.+.|..++..++.+-....+.. -+..+.+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456666677776666654443 2234455666777777777777777777664333332222 1222222222222
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
... +++-...+|+|...-..++..+...|+.++|.+.+-.+.++
T Consensus 222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 22333456777777777777777777777777766666544
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.047 Score=48.10 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHH
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPE---DVSSYVMLS 450 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~ 450 (521)
.|+.-+..| ..|++..|...|.... .-|+ ...+--|..++...|++++|...|..+.+-.|+ -|+.+..++
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466555544 6677888888777642 1222 223444777888889999999999888886655 567788889
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 009967 451 NALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999988765
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.35 E-value=0.062 Score=42.10 Aligned_cols=79 Identities=9% Similarity=0.166 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMR---------------INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~---------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 372 (521)
++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++.+.....++
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 44445555555555555554444321 123445666666666666666666666666666665566
Q ss_pred CCCChhHHHHHHHH
Q 009967 373 GMLKPEHYACMVDL 386 (521)
Q Consensus 373 ~~~~~~~~~~l~~~ 386 (521)
++.+..+|..|+.-
T Consensus 84 I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 84 IPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHH
Confidence 55555555555543
No 231
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.30 E-value=1.6 Score=44.97 Aligned_cols=50 Identities=22% Similarity=0.150 Sum_probs=23.3
Q ss_pred HHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232 (521)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 232 (521)
..+.+.+++....+++..- ..+...-.....+....|+.++|....+.+=
T Consensus 107 ~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW 156 (644)
T PRK11619 107 NELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELW 156 (644)
T ss_pred HHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344455555555522221 2233334444555555666555554444443
No 232
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=1.5 Score=44.41 Aligned_cols=312 Identities=16% Similarity=0.067 Sum_probs=173.4
Q ss_pred hCCCCcHHHHH-----HHHHHHHcCCCHHHHHHHhhcCCCCC---chhHHHHHHHHHcCC---CHHHHHHHHhhCCC--C
Q 009967 137 VGLQSNVFVGS-----AILDLYIKLSSIEEATRVFEDTHNPN---VVSYTTMICGLLKRE---RFEDALKLFQEMPH--R 203 (521)
Q Consensus 137 ~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g---~~~~a~~~~~~~~~--~ 203 (521)
.|++.+..-|. .+++-+...+.+..|+++-..+..|. ...|.....-+.+.. +-+-+..+-+++.. -
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 35555555443 34556666778888888887777654 445555555555542 23334444444444 3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHH
Q 009967 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG----LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN 279 (521)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 279 (521)
...+|..+++.....|+.+-|..+++.=...+ +-.+..-+...+.-+...|+.+....++-.+...- +.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~---- 578 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NR---- 578 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HH----
Confidence 45667777777777888888877764322111 01122234445555556666665555554443321 00
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHcCChHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHH
Q 009967 280 SLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFE--RMR----INGIRPNGVTLLGLLWACN 352 (521)
Q Consensus 280 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~--~m~----~~~~~p~~~~~~~ll~~~~ 352 (521)
.+.+.-..+...|..+|....+ .|..+ +-..|-+..+. ++...|. ... ..+..|+.. ....+|.
T Consensus 579 --s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a 649 (829)
T KOG2280|consen 579 --SSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALK---TAANAFA 649 (829)
T ss_pred --HHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHH---HHHHHHh
Confidence 1111112233344444444332 11111 11112222222 2222221 100 112333333 2333343
Q ss_pred hhcc----------HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009967 353 HTGL----------VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH 422 (521)
Q Consensus 353 ~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 422 (521)
+... ..+-..+.+.+..+.+..-...+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhh
Confidence 3322 223344444454455544444456666777788999999999999998 78888888888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+++++-+++.+.. .+|-.|.=...+|.+.|+.++|..++-+..
T Consensus 729 ~kweeLekfAksk-----ksPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 729 KKWEELEKFAKSK-----KSPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hhHHHHHHHHhcc-----CCCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 9998876665433 246778888999999999999999988753
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.25 E-value=0.4 Score=47.48 Aligned_cols=160 Identities=12% Similarity=-0.013 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHh----hccHHHHHHHHHHchHhCCCCCChh
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRING-IRPNG-----VTLLGLLWACNH----TGLVEKGYSYFSQAKLEDPGMLKPE 378 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 378 (521)
+..++....-.||-+.+++.+.+..+.+ +.-.. -+|..++..++. ..+.+.|.++++.+...+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3445555555666677776666654422 21111 123333333322 456778888888887555 4544
Q ss_pred HHH-HHHHHHHhcCCHHHHHHHHhhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH-H
Q 009967 379 HYA-CMVDLLSRSGRFKEAKEFLYDLPF------DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML-S 450 (521)
Q Consensus 379 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~ 450 (521)
.|. .-.+.+...|++++|++.|++... +-....+-.++..+....++++|...|.++.+.+.-+..+|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 443 335666778888888888886431 12233555667778888999999999999998766555555544 4
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHh
Q 009967 451 NALSVAGKW-------DNVSNIRREMKE 471 (521)
Q Consensus 451 ~~~~~~g~~-------~~A~~~~~~m~~ 471 (521)
-++...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 456677888 888888887654
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.21 E-value=0.044 Score=52.09 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=63.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG----FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 450 (521)
+...++.+..+|.+.|++++|+..|++ +...|+.. +|..+..+|...|+.++|++.++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 345678888888888888888888877 45566643 4888888888888888888888888886321 111111
Q ss_pred H--HHHhcCChHHHHHHHHHHHhCCCc
Q 009967 451 N--ALSVAGKWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 451 ~--~~~~~g~~~~A~~~~~~m~~~g~~ 475 (521)
. .+....+..+..++++.+.+-|.+
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 111223334555666666655543
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=96.21 E-value=0.12 Score=49.23 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=39.3
Q ss_pred HHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIG-FWKALLGGCQIHSNVELGEFAARRI 435 (521)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (521)
.+|.+.-++..+..+ .|+.....+..++.-.|+++.|...|++.. ..||.. +|......+.-.|+.++|.+.++++
T Consensus 321 ~~a~~~A~rAveld~--~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDITT--VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444443332 344444444444444555555555555532 244322 4444444445555555555555555
Q ss_pred HhcCCC
Q 009967 436 LALDPE 441 (521)
Q Consensus 436 ~~~~p~ 441 (521)
++++|.
T Consensus 399 lrLsP~ 404 (458)
T PRK11906 399 LQLEPR 404 (458)
T ss_pred hccCch
Confidence 555554
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.15 E-value=0.14 Score=40.66 Aligned_cols=119 Identities=16% Similarity=0.087 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967 310 NAVICGYAQNGRGEEAIEFFERMRINGIRP---NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386 (521)
Q Consensus 310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (521)
-.-.....+.|++++|.+.|+.+...- +. ....-..++.++.+.++++.|...+++.++.++..|+.. |.....+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~g 91 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRG 91 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHH
Confidence 334445566788888888888877642 11 223566777778888888888888888877777666543 4444444
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445 (521)
Q Consensus 387 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 445 (521)
++.....+..+.-+-. .+.| .+....|...|+++++..|++..+
T Consensus 92 L~~~~~~~~~~~~~~~--~drD-------------~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFR--SDRD-------------PTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHhhhHHhhhcc--cccC-------------cHHHHHHHHHHHHHHHHCcCChhH
Confidence 4333222222111111 1111 123558889999999999977644
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=1.9 Score=44.22 Aligned_cols=173 Identities=14% Similarity=0.107 Sum_probs=107.7
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNV---VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
-+..+.+..-++-|..+...-..+.. .......+.+.+.|++++|..-|-+-... +.| ..++.-+....+.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHH
Confidence 45555666666777766655332211 12233344566789999998888766532 222 2356666666677
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCch-hHHHHHHHHHcCCCHHHHHHHHhhCCCC
Q 009967 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV-SYTTMICGLLKRERFEDALKLFQEMPHR 203 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 203 (521)
..-..+++.+.+.|+ .+...-..|+++|.+.++.++-.+..+...+.... -....+..+.+.+-.++|..+-.+...
T Consensus 414 knLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 777788888888884 34445567899999999999888888777631111 244555666666666666666555544
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEM 231 (521)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m 231 (521)
.......+ +-..+++++|++++..+
T Consensus 492 he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 33333333 33467788888887765
No 238
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.019 Score=40.77 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP-----FD---PG-IGFWKALLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
+++.+..+|.+.|++++|+..+++.. .. |+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555666666666666666555421 11 22 235666666777777777777777776653
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.13 E-value=0.58 Score=41.07 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 415 LLGGCQIHSNVELGEFAARRILALDPEDV---SSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+...|.+.|.+..|..-++++++.-|+.+ ..+..+..+|...|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34558899999999999999999877644 456677888999999999988665443
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.77 Score=41.13 Aligned_cols=173 Identities=17% Similarity=0.058 Sum_probs=112.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967 293 DSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372 (521)
Q Consensus 293 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 372 (521)
...+.+++...+....--.-.......|++.+|...|+...... +-+......+..+|...|+.+.|..++..+.....
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 34445555544422222223345667899999999999887753 22345667788889999999999999988742221
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHH
Q 009967 373 GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALD--PEDVSSYVML 449 (521)
Q Consensus 373 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 449 (521)
.........-+..+.+.....+...+-++....| |...-..+...+...|+.+.|.+.+-.++..+ -.+...-..+
T Consensus 200 -~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 200 -DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred -hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 1111122233455555555555555555544456 66677778888999999999999988888854 3377777888
Q ss_pred HHHHHhcCChHHHHHHHH
Q 009967 450 SNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~ 467 (521)
+..+...|..+.+...++
T Consensus 279 le~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 279 LELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 888888776555443333
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.07 E-value=0.054 Score=47.55 Aligned_cols=111 Identities=9% Similarity=0.063 Sum_probs=84.8
Q ss_pred HHHHHhccCC--CCCcccHHHHHHHHHh-----cCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC----------
Q 009967 60 SVHQVFDEVP--DLNVVSATTIIGRFAK-----QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE---------- 122 (521)
Q Consensus 60 ~A~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 122 (521)
-.+..|...+ +.|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445566655 5677788888877754 3667777888999999999999999999999865533
Q ss_pred ------ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH-HHHHHHhhcCC
Q 009967 123 ------DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI-EEATRVFEDTH 170 (521)
Q Consensus 123 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 170 (521)
+-+-+++++++|...|+.||..+-..|++++.+.|-. .+..++.-.|.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2334789999999999999999999999999988753 34444444444
No 242
>PRK15331 chaperone protein SicA; Provisional
Probab=95.98 E-value=0.21 Score=40.62 Aligned_cols=91 Identities=15% Similarity=0.049 Sum_probs=54.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (521)
-+...|++++|..+|+-+...+ .-+..-+..|..++...+++++|...|.....-.. -|+..+-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCHH
Confidence 3455677777777777665533 12344455666666667777777777766543322 23333444567777777777
Q ss_pred HHHHHHhhCCCCCC
Q 009967 395 EAKEFLYDLPFDPG 408 (521)
Q Consensus 395 ~A~~~~~~~~~~~~ 408 (521)
.|+..|......|.
T Consensus 123 ~A~~~f~~a~~~~~ 136 (165)
T PRK15331 123 KARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777766543443
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.98 E-value=0.052 Score=44.20 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHH-----hCCCCcHHHHH
Q 009967 76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK-----VGLQSNVFVGS 147 (521)
Q Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 147 (521)
...++..+...|++++|..+.+.+.... +-|...|..+|.++...|+...|.++|+.+.+ .|++|+..+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4445566677889999999988888765 55777888889999999999999888887743 47888776643
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.89 E-value=1.7 Score=41.43 Aligned_cols=151 Identities=10% Similarity=-0.100 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhhccHHHHHHHHHHchHhC-CCCCChhH
Q 009967 304 RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP---NGVTLLGLLWACNHTGLVEKGYSYFSQAKLED-PGMLKPEH 379 (521)
Q Consensus 304 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 379 (521)
....+|..++..+.+.|.++.|...+.++...+..+ .......-....-..|+.++|...++...... ....+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344577778888888888888888888877643111 22223333344556677788888877775311 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 380 YACMVDLLSRSGRFKEAKEF-LYDLPFDPGIGFWKALLGGCQIH------SNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
...+...+.. ..+..... ........-...+..+..-+... ++.+++...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011233333333333 888999999999999999888888888887
Q ss_pred HHhc
Q 009967 453 LSVA 456 (521)
Q Consensus 453 ~~~~ 456 (521)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7654
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.077 Score=46.77 Aligned_cols=92 Identities=22% Similarity=0.147 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-hHHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNG----VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-EHYACM 383 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 383 (521)
|+.-+. +.+.|++..|..-|....+.. |+. ..+..|..++...|+++.|..+|..+.+..+-.|.. +.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444433 334455777777777666642 221 244556666667777777777766666555544432 455555
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 009967 384 VDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~ 403 (521)
..+..+.|+.++|..+|+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 55555666665555555553
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.80 E-value=0.66 Score=35.98 Aligned_cols=141 Identities=9% Similarity=0.003 Sum_probs=87.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967 316 YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395 (521)
Q Consensus 316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (521)
..-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+.+- .-...++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence 34568888888888887764 35556666665555555666666666665322222111 113344555555443
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967 396 AKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 396 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (521)
+....+..+......|+-+.-.+++..+...+..+|..+..++.+|.+.|+..++-+++++..+.|+.
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33344556677788899998889998888655559999999999999999999999999999999974
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.77 E-value=0.1 Score=40.16 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=83.0
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC---chHHHHHHHHHHhcC
Q 009967 384 VDLLSRSGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALD-PED---VSSYVMLSNALSVAG 457 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g 457 (521)
..++...|+.+.|++.|.+. .+ +.....||.-..++...|+.++|++-+.+++++. |.. ...|..-+..|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34567788888888888773 22 4566788888888888999999999999988854 332 235677778888889
Q ss_pred ChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHH
Q 009967 458 KWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQI 516 (521)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 516 (521)
+.+.|+.=|+...+.|-+.-.. -. -..+|=.+=....|+++.+++
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~-QL-------------V~lNPYAAlCN~MLa~~f~ql 174 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFARE-QL-------------VELNPYAALCNQMLADAFDQL 174 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHH-HH-------------HhcChHHHHHHHHHHHHHHhc
Confidence 9999999898887777432110 00 034565666666666666554
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.68 E-value=0.036 Score=31.66 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILALDPED 442 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 442 (521)
.|..+...+...|++++|++.|+++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666777777788888888888888877754
No 249
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.63 E-value=2.6 Score=41.68 Aligned_cols=136 Identities=10% Similarity=0.065 Sum_probs=91.4
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhh-HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 009967 72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT-FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAIL 150 (521)
Q Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 150 (521)
+-..|+.++.---.....+.+..++..+... .|.... |......=.+.|..+.+.++|++.+. |++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4456777776655555667777777777753 355443 34444444577889999999998886 5677777777766
Q ss_pred HHHH-cCCCHHHHHHHhhcCCC------CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHH
Q 009967 151 DLYI-KLSSIEEATRVFEDTHN------PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNA 210 (521)
Q Consensus 151 ~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 210 (521)
..+. ..|+.+.....|+.... .+...|...|.--..++++.....+++++.+-....|+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 6554 46777777788877765 345567777777777777777777777777643333333
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.59 E-value=0.96 Score=36.38 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=67.6
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 009967 74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLY 153 (521)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 153 (521)
..-..++..+...+.+......++.+...+ ..+...++.++..|++.+ .+.....+.. ..+......+++.|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 344566666666677777777777776665 355566666776666542 2333333331 12223333455666
Q ss_pred HcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcC-CCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 009967 154 IKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKR-ERFEDALKLFQEMPHRNVVSWNAMIGGYS 216 (521)
Q Consensus 154 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 216 (521)
.+.+-++++.-++.++.. +...+..+... ++.+.|.+++.+.. +...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 666666666666655532 22223333333 55666666655532 4445555554443
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=95.55 E-value=1.1 Score=43.04 Aligned_cols=67 Identities=4% Similarity=-0.140 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+.|......+..+....++++.|...|+++..++|+.+.+|...+..+.-+|+.++|.+.+++..+.
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 4456666666666777778999999999999999988889999999888999999999888885443
No 252
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.46 E-value=0.036 Score=31.78 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 410 GFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
.+|..+...+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777778888888888888888887774
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.43 E-value=0.2 Score=39.22 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHc
Q 009967 340 NGVTLLGLLWACNHTGLVEKGYSYFSQA 367 (521)
Q Consensus 340 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 367 (521)
|..++..++.++++.|+.+....+++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 4556777888888888888877777653
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.38 E-value=0.79 Score=44.79 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=92.1
Q ss_pred HHHHhcCCHHHHHHHHh--hcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHH
Q 009967 283 SFYAKCGSMEDSLLVFD--KLT-ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEK 359 (521)
Q Consensus 283 ~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 359 (521)
+...-.++++.+.+... ++. .-+....+.++.-+-+.|-.+.|+.+.++ |+ .-| ....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-------~~-~rF----eLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-------PD-HRF----ELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HH-HHH----HHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-------hH-HHh----HHHHhcCCHHH
Confidence 33445677777555554 222 11234467777777778888888776543 11 112 33456788888
Q ss_pred HHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 009967 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALD 439 (521)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (521)
|.++.+.. .++..|..|.+...+.|+++-|++.+++.. -+..|+-.|...|+.+.-.++.+.+...+
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 87776544 366788888888888888888888888876 36667777777888777777776666544
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 440 PEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 440 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
. ++....++.-.|+.++..+++.+
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 3 34444555556677776666654
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.37 E-value=0.68 Score=45.25 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=69.8
Q ss_pred HHHHhcCChHHHHHHHH--HhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC
Q 009967 81 GRFAKQHHYEEAIYLFS--RMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158 (521)
Q Consensus 81 ~~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 158 (521)
....-+|+++++.+..+ ++. ..+ +....+.+++.+.+.|..+.|+++-.. +. .-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence 34455677777766664 222 112 244466666666777777777665332 11 12344556777
Q ss_pred HHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009967 159 IEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235 (521)
Q Consensus 159 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 235 (521)
++.|.++.++.. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|...|+.+.-.++.+.....|
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 777777666654 444666666666677777777766666653 4455555666666666555555554443
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.35 E-value=1.8 Score=37.91 Aligned_cols=194 Identities=20% Similarity=0.126 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 009967 276 FVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW- 349 (521)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~- 349 (521)
.........+...+++..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3444455555555555555555554431 2233444455555555556666666666555322221 11111112
Q ss_pred HHHhhccHHHHHHHHHHchHhCCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHhcCC
Q 009967 350 ACNHTGLVEKGYSYFSQAKLEDPG--MLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG--IGFWKALLGGCQIHSN 424 (521)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~ 424 (521)
.+...|+++.+...+.+... ... ......+......+...++.+.+...+.... ..++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666532 110 1122233333333555666666666666532 2222 4455556666666667
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 425 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
++.|...+.......|.....+..+...+...|.++++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777776665455555555555555566666666666544
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.27 E-value=1.2 Score=35.72 Aligned_cols=127 Identities=14% Similarity=0.032 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS 388 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (521)
...++..+...+.......+++.+...+ ..+....+.++..|++.+ .++...+++. . .+.......++.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~---~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN----K---SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh----c---cccCCHHHHHHHHH
Confidence 3455666666677777777777777665 245556667777776543 3444444442 1 11222334566666
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 389 RSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH-SNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 389 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
+.+.++++.-++.++.. +...+..+... ++++.|.+.+.+ +.++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77777777777776641 22222333333 677777777765 3366677777766543
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.17 E-value=0.51 Score=43.30 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCC-----CCChh
Q 009967 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLRE-GLVPN---HSTLPCAIIAAANIAALGMGKSFHACAVKFLG-----KLDVF 276 (521)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 276 (521)
.+|..+.+++.+.-++.+++.+-+.-... |..|. -....++..+....+.++++.+.|+.+.+... -....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 45555666666666666666655544332 22221 12223445555566667777766666554321 12456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC-------CChh------HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC
Q 009967 277 VGNSLISFYAKCGSMEDSLLVFDKLTE-------RNIV------TWNAVICGYAQNGRGEEAIEFFERMRI----NGIRP 339 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p 339 (521)
++..|...|.+..|+++|.-+..+..+ .|.. ....|.-++...|....|.+.-++..+ .|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 778888888888888887766555432 2322 222344556677877777777776543 34222
Q ss_pred CH-HHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967 340 NG-VTLLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 340 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
.. .....+.+.|...|+.|.|+.-|+.+.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 21 244566677888888888887777653
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.09 E-value=0.064 Score=32.99 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
|.++..++.+|.+.|++++|++++++.++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999998865
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.07 E-value=1.5 Score=40.35 Aligned_cols=122 Identities=7% Similarity=0.013 Sum_probs=54.1
Q ss_pred HHHHHHhhccHHHHHHHHHHchHhCCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhh-------CCCCCCHHHHH--
Q 009967 347 LLWACNHTGLVEKGYSYFSQAKLEDPGML----KPEHYACMVDLLSRSGRFKEAKEFLYD-------LPFDPGIGFWK-- 413 (521)
Q Consensus 347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~~-- 413 (521)
+..++...+.++++.+.|+.+..-..-.. ...++-.|...|.+..++++|.-+..+ ..++.-..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44445555555555555555432111111 122455555555555555554443332 11111111121
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 414 ---ALLGGCQIHSNVELGEFAARRILALD------PEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 414 ---~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
.+.-++...|....|.+..+++.++. |-.......+++.|...|+.+.|+.-|++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22233455555555555555554421 11223344455556666666655555544
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.01 E-value=0.15 Score=45.71 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
++..++..+...|+++.+...+++++..+|-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5566677777788888888888888888888888888888888888888888888887754
No 262
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=3.2 Score=42.74 Aligned_cols=177 Identities=15% Similarity=0.054 Sum_probs=120.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 009967 176 SYTTMICGLLKRERFEDALKLFQEMPHRNV---VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN 252 (521)
Q Consensus 176 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 252 (521)
....-+..+.+...++-|+.+-+.-..+.. .........+.+.|++++|...|-+-... +.|. .++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 345566777777888888887776554322 22334455667889999999888766442 2332 34455566
Q ss_pred hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHHcCChHHHHHHHHH
Q 009967 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNI-VTWNAVICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~ 331 (521)
......-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+...+-.. .-....+..+.+.+-.++|..+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 66677777888888888877 667778899999999999999888887763211 1245566777777777777766655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHc
Q 009967 332 MRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367 (521)
Q Consensus 332 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 367 (521)
... +......+ +...+++++|.++++.+
T Consensus 489 ~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 432 23333333 45678999999999876
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.94 E-value=0.098 Score=40.22 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=52.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
.+.+..|+.+.|++.|.+.+.+-|.++++|+.-+.++.-+|+.++|+.=+++..+..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 346788999999999999999999999999999999999999999999999987653
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=2.4 Score=36.95 Aligned_cols=141 Identities=17% Similarity=0.156 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHh----CCCCCChhHHH
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRI--NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE----DPGMLKPEHYA 381 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 381 (521)
.|+.-...|..+|.++-|-..+++.-+ .++.|+ +|.++|++...- .....-...+.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd------------------~AlqlYqralavve~~dr~~ma~el~g 154 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPD------------------DALQLYQRALAVVEEDDRDQMAFELYG 154 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHH------------------HHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 445556667777777666666655433 123444 333333332110 11111122345
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHH
Q 009967 382 CMVDLLSRSGRFKEAKEFLYDLP-------FDPGI-GFWKALLGGCQIHSNVELGEFAARRILA----LDPEDVSSYVML 449 (521)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l 449 (521)
.+.+.|.+..++++|-..+.+-. .-++. ..+-..+-.+....|+..|...++...+ .+|++..+...|
T Consensus 155 k~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 155 KCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 55667777778877776665532 12332 2455556666667789999999888666 346677788888
Q ss_pred HHHHHhcCChHHHHHHHH
Q 009967 450 SNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~ 467 (521)
+.+| ..|+.+++..++.
T Consensus 235 L~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 235 LTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHh-ccCCHHHHHHHHc
Confidence 8776 4567777766554
No 265
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.77 E-value=6 Score=41.01 Aligned_cols=122 Identities=10% Similarity=0.036 Sum_probs=73.3
Q ss_pred hhhhcccCCChhHHHHHhccCCC----CCcccHHHHHH-----HHHhcCChHHHHHHHHHhHHCC---CCCChhhHHHHH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD----LNVVSATTIIG-----RFAKQHHYEEAIYLFSRMLLLN---IRPSEFTFGSVI 115 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll 115 (521)
+++.+.+.+... |....++..+ .....|....+ .+...+++..|.+.++.+...- ..|....+..++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 677777777666 8888776432 12223333222 2333479999999998887532 234455555555
Q ss_pred HHHc--CCCChHHHHHHHHHHHHhCC---------CCcHHHHHHHHHHHH--cCCCHHHHHHHhhcCC
Q 009967 116 PSST--ALEDLNLGKQLHAWATKVGL---------QSNVFVGSAILDLYI--KLSSIEEATRVFEDTH 170 (521)
Q Consensus 116 ~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 170 (521)
.+.. ..+..+.+.+.++.+..... .|...++..+++.++ ..|+++.+...++++.
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5543 45666777777776644221 345667777776544 5788777777776664
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.76 E-value=3.2 Score=40.26 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCC--HHHHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF--DPG--IGFWKALLGG 418 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~~ 418 (521)
+=..+..++-+.|+.++|.+.++++.+..+......+...|+.++...+.+.++..++.+-.. -|. ...|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566667788999999999999976666444556778899999999999999999887541 233 2355554433
Q ss_pred HHhcCC---------------HHHHHHHHHHHHhcCCC
Q 009967 419 CQIHSN---------------VELGEFAARRILALDPE 441 (521)
Q Consensus 419 ~~~~g~---------------~~~A~~~~~~~~~~~p~ 441 (521)
....+| -..|.+.+.++++.+|-
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 332232 23466788888887763
No 267
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=4 Score=43.13 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=36.5
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCcc-----cHHHHHH---HHHhcCChHHHHHHHHHhHH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNVV-----SATTIIG---RFAKQHHYEEAIYLFSRMLL 101 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~l~~---~~~~~g~~~~A~~~~~~m~~ 101 (521)
-+..+....+|++|..+-+....|+.. .+..... -+..+|++++|.+.|+++..
T Consensus 313 qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 313 QIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred HHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 344555566699999888877655543 2222222 25678999999999999864
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=3 Score=36.37 Aligned_cols=54 Identities=19% Similarity=0.076 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhhccHHHHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGI---RPNGVTLLGLLWACNHTGLVEKGYSY 363 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~ 363 (521)
|-..|-.+....++..|...++.--..+- .-+..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 33444444445556666665555332111 11233455555544 23444444443
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.47 E-value=0.37 Score=39.27 Aligned_cols=129 Identities=9% Similarity=-0.012 Sum_probs=70.9
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhh-HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHH-HHHHHH
Q 009967 73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFT-FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF-VGSAIL 150 (521)
Q Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 150 (521)
...|..-+. +++.+..++|+.-|..+.+.|...-+.. .........+.|+...|...|.++-...-.|... -...|=
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344544444 4566677777777777776653322111 1122223556777777777777776643333322 111111
Q ss_pred --HHHHcCCCHHHHHHHhhcCCCCCc----hhHHHHHHHHHcCCCHHHHHHHHhhCCC
Q 009967 151 --DLYIKLSSIEEATRVFEDTHNPNV----VSYTTMICGLLKRERFEDALKLFQEMPH 202 (521)
Q Consensus 151 --~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~ 202 (521)
-.+...|.++......+-+..+.. ..-..|.-+-.+.|++.+|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 134456777777776666654221 1233455555677778888777777665
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.43 E-value=3.3 Score=36.53 Aligned_cols=177 Identities=15% Similarity=-0.018 Sum_probs=90.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHCC--CCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc
Q 009967 78 TIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155 (521)
Q Consensus 78 ~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (521)
.=+..-.+.|++++|.+.|+.+..+- -+-...+...++.++.+.++++.|+...++..+.-.......|..-|.+++.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 33444577889999999999888652 1223445566667778888999998888888775422223334444444442
Q ss_pred -------CCCHHHHHHHhhcCCC-----CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 009967 156 -------LSSIEEATRVFEDTHN-----PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEE 223 (521)
Q Consensus 156 -------~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 223 (521)
..|...+...|..+.+ ||+.- ...|......+...=...=..+.+.|.+.|.+..
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 1222333333322221 22210 0111111111100000011234566778888888
Q ss_pred HHHHHHHHHHCCCCCC---hhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967 224 AVNLFIEMLREGLVPN---HSTLPCAIIAAANIAALGMGKSFHACAVK 268 (521)
Q Consensus 224 a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 268 (521)
|..-++.|.+. .+-+ ...+..+..+|...|..+.|...-.-+..
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 88888888775 1111 12334445555555655555554444433
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=1.6 Score=39.74 Aligned_cols=146 Identities=9% Similarity=-0.081 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHH----HHHHHHHhcCCHHH
Q 009967 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA----CMVDLLSRSGRFKE 395 (521)
Q Consensus 320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~ 395 (521)
|++.+|-..|+++.+. .+-|...+...-.+|...|+.+.-...++++.-.- .++...|. .+.-++..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4444444444444442 22233344444444555555554444444443111 12322222 22233344555555
Q ss_pred HHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 396 AKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE----DVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 396 A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
|++.-++. .+ +.|..+..++...+-..|+..++.++..+-...-.. -..-|-..+-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 55544442 11 223334444444444455555555544433221110 111233344444444555555555543
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=1 Score=40.89 Aligned_cols=145 Identities=8% Similarity=-0.063 Sum_probs=79.0
Q ss_pred hcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHcCCCHHH
Q 009967 85 KQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV---GLQSNVFVGSAILDLYIKLSSIEE 161 (521)
Q Consensus 85 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 161 (521)
-+|++.+|-..++++.+. .|.|...+...=.+|.-.|+...-...++.+.-. ++|-.........-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 346666666666666654 3555555665566666666666666666655543 111122223333344556677777
Q ss_pred HHHHhhcCCCC---CchhHHHHHHHHHcCCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 162 ATRVFEDTHNP---NVVSYTTMICGLLKRERFEDALKLFQEMPHR-------NVVSWNAMIGGYSQTGRNEEAVNLFIE 230 (521)
Q Consensus 162 a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 230 (521)
|++.-++..+. |.-.-.+....+-..|++.++.++..+-... -...|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 77776666652 2223334555555667777777666665541 112233333444555667777777654
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.33 E-value=2.9 Score=35.67 Aligned_cols=159 Identities=15% Similarity=0.083 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385 (521)
Q Consensus 307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 385 (521)
.+||-+.--+...|+++.|.+.|+...+.. |.- .+...-.-++.-.|+++.|.+-+...-+..+-.|-...|-.+..
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 456666555666666666666666655532 221 12211111233445666665544444333332232222222221
Q ss_pred HHHhcCCHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHhcC
Q 009967 386 LLSRSGRFKEAKEFLY-DLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED-------VSSYVMLSNALSVAG 457 (521)
Q Consensus 386 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 457 (521)
+.-++.+|..-+. +.. +.+..-|...+-.+.- |+.. ...+++++.+-..++ ..+|..++.-+...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2224445543332 222 2333333332222211 1111 122333333322221 246777777777777
Q ss_pred ChHHHHHHHHHHHhCC
Q 009967 458 KWDNVSNIRREMKEKG 473 (521)
Q Consensus 458 ~~~~A~~~~~~m~~~g 473 (521)
+.++|..+|+-.+..+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 7777777777655443
No 274
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.24 E-value=0.49 Score=39.60 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
..+..+.+.++.|+.-..++++++|....++..-+.+|.+..++++|++=|+++.+.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 344556666777777777777777766666666666777777777777777666543
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.14 E-value=1.9 Score=36.13 Aligned_cols=90 Identities=10% Similarity=-0.074 Sum_probs=46.8
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCC
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGF--WKALLGGCQIHSN 424 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~ 424 (521)
..+...+++++|...++... ..+...+. ..--.|.+.....|.+|+|+..++... .++-.. ...-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l-~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQAL-AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHH-ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCc
Confidence 34556667777776666553 22211111 112234555666666666666666654 332222 2222334666666
Q ss_pred HHHHHHHHHHHHhcCC
Q 009967 425 VELGEFAARRILALDP 440 (521)
Q Consensus 425 ~~~A~~~~~~~~~~~p 440 (521)
-++|+..|+++++.++
T Consensus 175 k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 175 KQEARAAYEKALESDA 190 (207)
T ss_pred hHHHHHHHHHHHHccC
Confidence 6666666666666553
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.98 E-value=2.9 Score=34.48 Aligned_cols=129 Identities=11% Similarity=0.089 Sum_probs=57.3
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCC--CHHHHHHHHhhCCCCChhHHH
Q 009967 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE--RFEDALKLFQEMPHRNVVSWN 209 (521)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~ 209 (521)
..+.+.+++|+...+..+++.+.+.|++.....++.--.=+|.......+-.+.... -.+-+.+++.++. ..+.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~ 93 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYE 93 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHH
Confidence 333444555555555555555555555554444443332233222222221111110 1223334444433 2344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268 (521)
Q Consensus 210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 268 (521)
.++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++...+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556666777777777766554221 111223445555555555544444444444
No 277
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.96 E-value=0.56 Score=41.50 Aligned_cols=99 Identities=14% Similarity=0.048 Sum_probs=74.2
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc-----------
Q 009967 294 SLLVFDKLT--ERNIVTWNAVICGYAQ-----NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG----------- 355 (521)
Q Consensus 294 A~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 355 (521)
.+..|..+. +.|-.+|-..+..+.. .+..+=...-++.|.+.|+.-|..+|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 4666677777776654 3566777777888889999999999999988764432
Q ss_pred -----cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCH
Q 009967 356 -----LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393 (521)
Q Consensus 356 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (521)
+-+-+..++++| +.+|+.||..+-..|+.++.+.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 235688999999 5999999999999999999887753
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.92 E-value=1.5 Score=42.42 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 381 ACMVDLLSRSGRFKEAKEFLYDLP-FDPG---IGFWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
..|..+..+.|+.++|.+.++++. ..|. ......|+.++...+.+.++..++.+--+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345555556666666666665542 1221 22445555566666666666666665433
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.78 E-value=12 Score=40.54 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=87.1
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HhhcchHHHHHHH
Q 009967 188 ERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA----ANIAALGMGKSFH 263 (521)
Q Consensus 188 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~ 263 (521)
++++.|+..+.++. ...|.-.++.--+.|.+.+|+.+| .|+...+..+..+| ...+.++.|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444554444443 112222233333444444444443 46666655555444 4556666666666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009967 264 ACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTW---NAVICGYAQNGRGEEAIEFFERMRINGIRPN 340 (521)
Q Consensus 264 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 340 (521)
+..-+. .-.+.+|..+|+|.+|..+-.++..+-.... ..|+.-+...+++-+|-++..+.... |.
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~ 1030 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE 1030 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH
Confidence 544321 3356778888888888888888876433333 67778888888888888888776542 21
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHc
Q 009967 341 GVTLLGLLWACNHTGLVEKGYSYFSQA 367 (521)
Q Consensus 341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 367 (521)
..+..+++...+++|.++....
T Consensus 1031 -----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1031 -----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred -----HHHHHHhhHhHHHHHHHHHHhc
Confidence 1233455666667766665543
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.68 E-value=0.16 Score=29.59 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 445 SYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888888888888888854
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.68 E-value=2.4 Score=34.74 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh-HHHHH--
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE-HYACM-- 383 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l-- 383 (521)
.|..-++ +.+.+..++|+.-|..+.+.|...-.. ............|+...|...|.++- .....|.+. -...|
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia-~dt~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA-ADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh-ccCCCcchhhHHHHHHH
Confidence 3443333 456677788888888887765432221 11222233566777888888888774 333222221 11111
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 384 VDLLSRSGRFKEAKEFLYDLPFDPG---IGFWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
...+...|.+++...-++.+..+.+ ...-..|.-+-.+.|++..|...|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2234566777777666666543222 22334455555566777777777766655
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.67 E-value=3.2 Score=34.21 Aligned_cols=133 Identities=9% Similarity=0.002 Sum_probs=84.1
Q ss_pred HHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCC--CHHHHHHHhhcCCC
Q 009967 94 YLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS--SIEEATRVFEDTHN 171 (521)
Q Consensus 94 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 171 (521)
+.++.+.+.+++|+...+..++..+.+.|++... .++++.++-+|.......+-.+.... -..-|...+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 4445556678888888999999999888876554 44455565555544443332222211 1334445555543
Q ss_pred CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009967 172 PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234 (521)
Q Consensus 172 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 234 (521)
..+..++..+...|++-+|.++.+.....+......++.+..+.+|..-=..+|+-...+
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 245667778888999999999998876555555566777777777766655555555543
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.56 E-value=3.9 Score=34.35 Aligned_cols=90 Identities=10% Similarity=-0.051 Sum_probs=61.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967 383 MVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKA-----LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457 (521)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 457 (521)
+...+...|++++|..-++.....|....+.. |.......|.+++|+..++...+.+- .+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 45667788888888888876433444443333 34456777888888888876655332 3344566788888888
Q ss_pred ChHHHHHHHHHHHhCC
Q 009967 458 KWDNVSNIRREMKEKG 473 (521)
Q Consensus 458 ~~~~A~~~~~~m~~~g 473 (521)
+.++|+.-|++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888877765
No 284
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.52 E-value=4.9 Score=39.92 Aligned_cols=15 Identities=7% Similarity=0.319 Sum_probs=11.0
Q ss_pred cCCChhHHHHHhccC
Q 009967 54 ESDKFSSVHQVFDEV 68 (521)
Q Consensus 54 ~~g~~~~A~~~~~~~ 68 (521)
-++++++|+++|+.-
T Consensus 8 lnn~~~eAe~~l~~~ 22 (468)
T PF10300_consen 8 LNNRFKEAEELLSPR 22 (468)
T ss_pred HCCCHHHHHHHHHhc
Confidence 356788888888743
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.33 E-value=0.18 Score=28.66 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777663
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.29 E-value=0.25 Score=39.98 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=43.4
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHH
Q 009967 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDA 193 (521)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 193 (521)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555666666666666666555445566666666666666666666666653322 2222334444444444444
Q ss_pred HHHHhhC
Q 009967 194 LKLFQEM 200 (521)
Q Consensus 194 ~~~~~~~ 200 (521)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 4444443
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.22 E-value=0.17 Score=29.46 Aligned_cols=27 Identities=15% Similarity=-0.097 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
+|..|...|...|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778888888888888888888554
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.16 E-value=2.7 Score=35.36 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhhccHHHHHHHHHHc
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV--TLLGLLWACNHTGLVEKGYSYFSQA 367 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~ 367 (521)
+..+...|++.|+.+.|.+.|.++.+....|... .+..+++.....+++..+.....++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444444555555555555555544433223222 3344444444455555554444444
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.15 E-value=6.8 Score=35.88 Aligned_cols=18 Identities=11% Similarity=-0.250 Sum_probs=12.6
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 009967 419 CQIHSNVELGEFAARRIL 436 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~ 436 (521)
+.+.++++.|.+.|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 556778888888777543
No 290
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.93 E-value=5.8 Score=34.48 Aligned_cols=197 Identities=20% Similarity=0.144 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh-hHHHHHHH-H
Q 009967 241 STLPCAIIAAANIAALGMGKSFHACAVKF-LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNI-VTWNAVIC-G 315 (521)
Q Consensus 241 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 315 (521)
..+......+...+.+..+...+...... ........+......+...+++..+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44445555555555555555555555442 2222445555566666677777778877777765 222 22333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhc
Q 009967 316 YAQNGRGEEAIEFFERMRINGIRP----NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRS 390 (521)
Q Consensus 316 ~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 390 (521)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+.......+ . ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNP--DDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc--ccchHHHHHhhHHHHHc
Confidence 7888999999999998855 233 233444444446778899999999988863333 2 356788888888889
Q ss_pred CCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 391 GRFKEAKEFLYDLP-FDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 391 g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
++++.|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999888753 3444 445555555555777899999999999998885
No 291
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.67 E-value=3.1 Score=35.02 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=64.3
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCC-HHHHHHHHHHHHhcCCH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKP---EHYACMVDLLSRSGRFKEAKEFLYD-LPFDPG-IGFWKALLGGCQIHSNV 425 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~ 425 (521)
+...|++++|..-|..+....+-.+.. ..|..-.-++.+.+.++.|+.-..+ +.+.|. ......-+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 456677777777777766555433321 2344445566777777777766555 333443 22333445567788899
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 426 ELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 426 ~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
++|++-|+++++.+|....+-...++.
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999766555544443
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.58 E-value=8.2 Score=35.35 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=11.1
Q ss_pred HHHHcCChHHHHHHHHH
Q 009967 315 GYAQNGRGEEAIEFFER 331 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~ 331 (521)
.+.+.++++.|...|+-
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 34556777777777764
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.51 E-value=5 Score=32.70 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=28.1
Q ss_pred HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404 (521)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 404 (521)
...++.+.+..++..+.--.+-.+...++.. ..+.+.|+|.+|..+|+++.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHh
Confidence 3455666666666666544443333334433 33456666666666666654
No 294
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.36 E-value=28 Score=40.95 Aligned_cols=148 Identities=7% Similarity=0.033 Sum_probs=85.3
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHcCCCHHHHHHHhhc-CCCCCchhHHHHHHHHHcCCC
Q 009967 113 SVIPSSTALEDLNLGKQLHAWATKVG--LQSNVFVGSAILDLYIKLSSIEEATRVFED-THNPNVVSYTTMICGLLKRER 189 (521)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~ 189 (521)
.+..+-.+.+.+.+|...++.-.... -......+..+...|+..+++|....+... ...|+ ...-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 33445556777788877777631111 012234455566688888888887777663 32232 2233445566788
Q ss_pred HHHHHHHHhhCCCC--C-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhcchHHHHHHHH
Q 009967 190 FEDALKLFQEMPHR--N-VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST-LPCAIIAAANIAALGMGKSFHA 264 (521)
Q Consensus 190 ~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~ 264 (521)
+..|...|+.+.+. + ...++-++......|.++.++-..+-..... .+.... ++.-..+.-+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88888888888763 2 4567777777777777777666544443321 122222 2223344456666666666554
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.20 E-value=1.3 Score=35.91 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=57.1
Q ss_pred hHHHHHHHH---HHhcCCHHHHHHHHhhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 378 EHYACMVDL---LSRSGRFKEAKEFLYDLP-FDPGIGFWKAL-LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 378 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
.+.+.|+.. -.+.++.+++..+++.+. ..|.......+ ...+...|++.+|+++|+++.+..|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 345555444 356788999999998875 36665544333 3347788999999999999888888777666666666
Q ss_pred HHhcCCh
Q 009967 453 LSVAGKW 459 (521)
Q Consensus 453 ~~~~g~~ 459 (521)
+...|+.
T Consensus 88 L~~~~D~ 94 (160)
T PF09613_consen 88 LYALGDP 94 (160)
T ss_pred HHHcCCh
Confidence 6666653
No 296
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.12 E-value=16 Score=37.93 Aligned_cols=65 Identities=12% Similarity=-0.011 Sum_probs=42.4
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh-------HHHHHHHHHHHHhC
Q 009967 72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL-------NLGKQLHAWATKVG 138 (521)
Q Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~ 138 (521)
+...| ++|-.|.|.|++++|.++..+.... .......+...+..+....+. ++...-|++..+..
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 34566 5677789999999999999666543 456667788888888765332 34555555555443
No 297
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.96 E-value=4.9 Score=31.38 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 372 (521)
.....+.....+|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++- +.|
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-ekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC-EKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-Hhc
Confidence 3444566677777777777777776653 25677777777777878888777777777774 444
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.90 E-value=0.42 Score=28.63 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344455555555555555555555544
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.86 E-value=0.39 Score=27.18 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+.++..++.++...|++++|++.+++..+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999997654
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.81 E-value=1.3 Score=35.38 Aligned_cols=80 Identities=16% Similarity=0.139 Sum_probs=51.3
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHhhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967 379 HYACMVDLL---SRSGRFKEAKEFLYDLP-FDPGIGFWKAL-LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453 (521)
Q Consensus 379 ~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 453 (521)
+.+.|++.. .+.++.+++..+++.+. ..|+......+ ...+...|++.+|.++|++..+..+..+..--.++.++
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 444444433 35788888888888765 35554433222 23367788888888888888887775565555566666
Q ss_pred HhcCC
Q 009967 454 SVAGK 458 (521)
Q Consensus 454 ~~~g~ 458 (521)
.-.|+
T Consensus 89 ~al~D 93 (153)
T TIGR02561 89 NAKGD 93 (153)
T ss_pred HhcCC
Confidence 66665
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.77 E-value=14 Score=36.15 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=97.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 351 (521)
|-....+++..+.++.++.-.+.+-.+|.+ .+-..|..++++|..+ ..+.-..+|+++.+..+ .|...-..|...|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 555566677777777777777777777764 4555677777777776 55667777777776532 2223333344334
Q ss_pred HhhccHHHHHHHHHHchHhCCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHHHh
Q 009967 352 NHTGLVEKGYSYFSQAKLEDPGMLK------PEHYACMVDLLSRSGRFKEAKEFLYDLP----FDPGIGFWKALLGGCQI 421 (521)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~ 421 (521)
.+ ++.+.+..+|.++.... .|. ...|..|...- ..+.+....+..++. ...-...+..+-.-|..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33 66777777777664222 121 11333333221 234555555555443 12223334444455666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
..++++|++++..+++.+..|..+-..++.-+.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 777888888887777766555555444444433
No 302
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.69 E-value=20 Score=37.73 Aligned_cols=217 Identities=11% Similarity=-0.060 Sum_probs=117.9
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhcCCHHHHHHHHhhcCC--------CChhHHHHH
Q 009967 249 AAANIAALGMGKSFHACAVKFLGKLDVF-------VGNSLI-SFYAKCGSMEDSLLVFDKLTE--------RNIVTWNAV 312 (521)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 312 (521)
.......+++|..+..++...-..|+.. .++.+- ......|++++|.++-+...+ .....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3345567777777777766554433222 223222 223457888888887776653 455677778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHH--HHHhhccH--HHHHHHHHHchHhCCCC-----CChhHH
Q 009967 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGV---TLLGLLW--ACNHTGLV--EKGYSYFSQAKLEDPGM-----LKPEHY 380 (521)
Q Consensus 313 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~--~~~~~~~~--~~a~~~~~~~~~~~~~~-----~~~~~~ 380 (521)
..+..-.|++++|..+.++..+..-.-+.. .+..+.. .+...|+. +.....+.......... +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888999999999988766532222333 2333322 35566733 33333344332221111 112234
Q ss_pred HHHHHHHHhcCCHHHHHHHHhh----CC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHH---
Q 009967 381 ACMVDLLSRSGRFKEAKEFLYD----LP-FDPGIG----FWKALLGGCQIHSNVELGEFAARRILALDPED-VSSYV--- 447 (521)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~----~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~--- 447 (521)
..+..++.+ .+.+..-... .. ..|... .+..|+......||.+.|...++++....-+. +.++.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 445555544 3333322222 11 122222 22256677888999999999999988843221 22222
Q ss_pred ---HHHHHHHhcCChHHHHHHHHH
Q 009967 448 ---MLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 448 ---~l~~~~~~~g~~~~A~~~~~~ 468 (521)
.-.......|+...+...+.+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 122223456888888877766
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.67 E-value=7.9 Score=33.19 Aligned_cols=158 Identities=12% Similarity=0.030 Sum_probs=96.3
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 009967 73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL 152 (521)
Q Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (521)
+..||.+.--+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|+++.|.+-+...-+.+ +.|+ ... +..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D-~~DP-fR~--LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD-PNDP-FRS--LWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC-CCCh-HHH--HHH
Confidence 4689999999999999999999999998865322222233333 2445689999988777776644 2222 111 222
Q ss_pred HH--cCCCHHHHHH-HhhcCCCCCchhHHHHHHHHHc-CCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHhcCCh
Q 009967 153 YI--KLSSIEEATR-VFEDTHNPNVVSYTTMICGLLK-RERFEDALKLFQEMPHR-------NVVSWNAMIGGYSQTGRN 221 (521)
Q Consensus 153 ~~--~~g~~~~a~~-~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~ 221 (521)
|. ..-++.+|.. +.++....|..-|...|-.|.- .=..+.+.+-...-.+. -+.||.-+..-+...|+.
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~ 253 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDL 253 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccH
Confidence 32 3345566654 4455555665666655544332 22223333332222221 246788888889999999
Q ss_pred HHHHHHHHHHHHCC
Q 009967 222 EEAVNLFIEMLREG 235 (521)
Q Consensus 222 ~~a~~~~~~m~~~~ 235 (521)
++|..+|+.....+
T Consensus 254 ~~A~~LfKLaiann 267 (297)
T COG4785 254 DEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876643
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.61 E-value=9.3 Score=33.88 Aligned_cols=220 Identities=16% Similarity=0.211 Sum_probs=107.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc-----CCCCChhH
Q 009967 208 WNAMIGGYSQTGRNEEAVNLFIEMLRE---GL--VPNHSTLPCAIIAAANIAALGMGKSFHACAVKF-----LGKLDVFV 277 (521)
Q Consensus 208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 277 (521)
...++..+.+.+++++.+..|.+++.- .+ .-+....+.++...+...+.+....+++.-++. +-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344555666666666666666555321 11 122334445555444444444444444332211 10111122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--------C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTE--------R-------NIVTWNAVICGYAQNGRGEEAIEFFERMRIN-GIRPNG 341 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~ 341 (521)
-.-|...|...+++.+..++++++.. . -...|..-|+.|....+-..-..++++...- ..-|..
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 23456666666777777777666642 0 1235667777787777776777777765431 122443
Q ss_pred HHHHHHHHHH-----HhhccHHHHH-HHHHHchHhCC--CCCChh---HHHHHHHHHHhcCC----HHHHHHHHhhCCCC
Q 009967 342 VTLLGLLWAC-----NHTGLVEKGY-SYFSQAKLEDP--GMLKPE---HYACMVDLLSRSGR----FKEAKEFLYDLPFD 406 (521)
Q Consensus 342 ~~~~~ll~~~-----~~~~~~~~a~-~~~~~~~~~~~--~~~~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~ 406 (521)
.. ..+++-| .+.|++++|. .+|+... ... ..|... -|..|..++.+.|- -.+|.- .+..
T Consensus 228 lI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK-NYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNd 301 (440)
T KOG1464|consen 228 LI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK-NYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKND 301 (440)
T ss_pred HH-HhHHHHcCCccccccchHHHHHhHHHHHHh-cccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCC
Confidence 33 3334444 3557777664 3444443 221 112222 24555666666551 111110 1125
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967 407 PGIGFWKALLGGCQIHSNVELGEFAARR 434 (521)
Q Consensus 407 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (521)
|.+.+...++.+|..+ +..+-.+++..
T Consensus 302 PEIlAMTnlv~aYQ~N-dI~eFE~Il~~ 328 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQNN-DIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHh
Confidence 5666777788777543 44444444443
No 305
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.49 E-value=0.92 Score=41.32 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=69.4
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHH
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVE 426 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~ 426 (521)
.-|.++|.+++|+..|.+.....+ .++.++..-..+|.+..++..|+.-.+... + +.-+..|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P--~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP--HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 458899999999999988763333 266777777888999998888877665532 1 222336666666667778889
Q ss_pred HHHHHHHHHHhcCCCCchH
Q 009967 427 LGEFAARRILALDPEDVSS 445 (521)
Q Consensus 427 ~A~~~~~~~~~~~p~~~~~ 445 (521)
+|.+-++.++++.|++...
T Consensus 183 EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHhHHHHHhhCcccHHH
Confidence 9999999999999975443
No 306
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.39 E-value=5.3 Score=36.78 Aligned_cols=94 Identities=12% Similarity=0.186 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCC-------CChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhhcc-
Q 009967 291 MEDSLLVFDKLTE-------RNIVTWNAVICGYAQNGR----GEEAIEFFERMRINGIRPNGV--TLLGLLWACNHTGL- 356 (521)
Q Consensus 291 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~- 356 (521)
..+|..+|+.|.+ ++-.++..++.. ..++ .+.++.+|+.+.+.|+..+.. ....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3456666666654 233344444433 2222 456777788888877665433 33333333322222
Q ss_pred -HHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967 357 -VEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387 (521)
Q Consensus 357 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (521)
..++.++++.+. +.++++....|..+.-..
T Consensus 197 ~v~r~~~l~~~l~-~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 197 KVARVIELYNALK-KNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHH-HcCCccccccccHHHHHH
Confidence 447778888885 668887777776654443
No 307
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.38 E-value=20 Score=37.27 Aligned_cols=400 Identities=8% Similarity=-0.084 Sum_probs=189.0
Q ss_pred CCChhHHHHHhccCCC-CCc-ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHH
Q 009967 55 SDKFSSVHQVFDEVPD-LNV-VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132 (521)
Q Consensus 55 ~g~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 132 (521)
...+++...++++-+. |-. ..-..-+..+.+.+++...+..+.. .+.+...-.....+....|+.++|.....
T Consensus 79 ~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~ 153 (644)
T PRK11619 79 NQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAK 153 (644)
T ss_pred cCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3457777777776553 311 1222334455567777766652211 13444444556666666777666655555
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHc------------------CCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHH
Q 009967 133 WATKVGLQSNVFVGSAILDLYIK------------------LSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDAL 194 (521)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 194 (521)
.+-..| ...+..++.+++.+.+ .|+...|..+...+..........++..+. +...+.
T Consensus 154 ~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~ 229 (644)
T PRK11619 154 ELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVE 229 (644)
T ss_pred HHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHH
Confidence 444444 2334444555555444 444444444444442111111222222222 222333
Q ss_pred HHHhhCCCCChhHHHHHHHH--HHhcCChHHHHHHHHHHHHCC-CCCChh--hHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 009967 195 KLFQEMPHRNVVSWNAMIGG--YSQTGRNEEAVNLFIEMLREG-LVPNHS--TLPCAIIAAANIAALGMGKSFHACAVKF 269 (521)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 269 (521)
..+.... ++...-...+.+ -....+.+.|...+....... ..+... ....+.......+....+...+......
T Consensus 230 ~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~ 308 (644)
T PRK11619 230 TFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR 308 (644)
T ss_pred HHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 3333221 111111111111 123455677888887764433 222211 1122222222221133444444433222
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 009967 270 LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLG 346 (521)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 346 (521)
. .+......-+....+.++++.+...+..|.+ ....-.-=+..++...|+.++|...|+.+... . +|..
T Consensus 309 ~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG 380 (644)
T PRK11619 309 S--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYP 380 (644)
T ss_pred c--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHH
Confidence 1 2344444455566678888888888888764 22222333455656678888888888886431 1 3443
Q ss_pred HHHHHHhhccHHHHHHHHHHch-HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 009967 347 LLWACNHTGLVEKGYSYFSQAK-LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNV 425 (521)
Q Consensus 347 ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 425 (521)
++.+ .+.|..-. ... .... ....+...+ --.-+..+...|+...|...+..+....+......+.......|.+
T Consensus 381 ~LAa-~~Lg~~~~-~~~-~~~~~~~~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~ 455 (644)
T PRK11619 381 MVAA-QRLGEEYP-LKI-DKAPKPDSALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWW 455 (644)
T ss_pred HHHH-HHcCCCCC-CCC-CCCCchhhhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCH
Confidence 3322 11221100 000 0000 000000011 1123455667789989988887754345555556666666677888
Q ss_pred HHHHHHHHHHHhcC-C--CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 009967 426 ELGEFAARRILALD-P--EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477 (521)
Q Consensus 426 ~~A~~~~~~~~~~~-p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 477 (521)
+.++....+....+ . .-|..|...+..+.+.-..+.++-.---..+.++.|.
T Consensus 456 ~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 456 DLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 88887776543311 0 1233455566666655566666544333446666654
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=20 Score=37.02 Aligned_cols=147 Identities=12% Similarity=0.136 Sum_probs=70.1
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCC---ChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcC
Q 009967 80 IGRFAKQHHYEEAIYLFSRMLLLNIRP---SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKL 156 (521)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (521)
++.+.+.+.+++|++.-+.-. |..| ........|..+...|+++.|-...-.|.. -+..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 445566666677766655433 2223 223344555556666666666555555543 2233343334444444
Q ss_pred CCHHHHHHHhhcCCC-CCchhHHHHHHHHHcCCCHHHHHHHHhhCC------------------C--CChhHHHHHHHHH
Q 009967 157 SSIEEATRVFEDTHN-PNVVSYTTMICGLLKRERFEDALKLFQEMP------------------H--RNVVSWNAMIGGY 215 (521)
Q Consensus 157 g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~------------------~--~~~~~~~~l~~~~ 215 (521)
++......++=.-.. -+...|..++..+.. .+...-.+...... + .+...-..|+..|
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 433322222111111 233445555555444 22222222222111 0 1223344578888
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009967 216 SQTGRNEEAVNLFIEMLR 233 (521)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~ 233 (521)
...++++.|+.++-..+.
T Consensus 516 l~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHccChHHHHHHHHhccC
Confidence 888888888888766644
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.19 E-value=26 Score=38.16 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=24.0
Q ss_pred HHHHHhhccHHHHHHHHHHchHhCCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPE--HYACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
+.+|...|+|.+|..+..++. .+ -+.. +-..|+.-+...+++-+|-++..+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~--~~--~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLS--EG--KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhc--CC--HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 344555555555555555442 11 1111 1134455555555555555555443
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.18 E-value=0.44 Score=26.69 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=16.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 415 LLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
+..++...|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555566666666666666666664
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.17 E-value=0.51 Score=26.76 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+.+|..++.+|...|++++|+..+++..+.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999998754
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.79 E-value=3.9 Score=34.42 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH---H
Q 009967 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERN------IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL---G 346 (521)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~---~ 346 (521)
..+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......+++..+...+.+....--.+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778899999999999999999988632 2467778888888999999999888876532222221111 1
Q ss_pred HHHH--HHhhccHHHHHHHHHHch
Q 009967 347 LLWA--CNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 347 ll~~--~~~~~~~~~a~~~~~~~~ 368 (521)
...+ +...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1111 345677777777776553
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.71 E-value=4.8 Score=29.74 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=46.5
Q ss_pred HHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967 314 CGYAQNGRGE--EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386 (521)
Q Consensus 314 ~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (521)
..|....+.+ +..+-++.+....+.|+.......+++|.+.+++..|.++++-++.+.+. ....|..+++-
T Consensus 16 ~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 16 EKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp HHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 3444444333 55566666777788899999999999999999999999999998877773 33367766653
No 314
>PRK09687 putative lyase; Provisional
Probab=90.38 E-value=14 Score=33.80 Aligned_cols=73 Identities=8% Similarity=-0.101 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 453 (521)
+..+-...+.++.+.|+....-.+++.+. .++. ....+.++...|+. +|+..+.++.+.+| |..+-.....++
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 44445555555555555332223333333 2332 23445555555653 46666666666555 544444444443
No 315
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=11 Score=32.70 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 009967 423 SNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~ 443 (521)
.|.-.+...+++..+.+|.-.
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccc
Confidence 455555555566666655433
No 316
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.30 E-value=15 Score=33.93 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh--h----cchHHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCH
Q 009967 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN--I----AALGMGKSFHACAVKFLGK---LDVFVGNSLISFYAKCGSM 291 (521)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 291 (521)
+++.+.+++.|.+.|..-+..+|.+....... . .....+..+++.|.+.-+- ++-..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777888888877777776654444333 1 2356777888888876543 233344444332 33333
Q ss_pred ----HHHHHHHhhcCC-----CC-hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc-c--
Q 009967 292 ----EDSLLVFDKLTE-----RN-IVTWNAVICGYAQNGR--GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG-L-- 356 (521)
Q Consensus 292 ----~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~-- 356 (521)
+.++.+|+.+.+ .| ......++...-.... ...+.++++.+.+.|+++....|..+.-...-.+ .
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 445566665553 22 2333333333222211 5578899999999999988777666544332222 2
Q ss_pred -HHHHHHHHHHchHhCC
Q 009967 357 -VEKGYSYFSQAKLEDP 372 (521)
Q Consensus 357 -~~~a~~~~~~~~~~~~ 372 (521)
.+...++.+.+.+..+
T Consensus 236 ~~~~i~ev~~~L~~~k~ 252 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQKG 252 (297)
T ss_pred HHHHHHHHHHHHhhCcc
Confidence 3344455555544444
No 317
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.10 E-value=46 Score=39.31 Aligned_cols=316 Identities=10% Similarity=0.020 Sum_probs=171.1
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCC----C--CchhHHHHHHHHHcCCCHHHHHHHHhh-CCCCChhHHHHHHHHHHhcCC
Q 009967 148 AILDLYIKLSSIEEATRVFEDTHN----P--NVVSYTTMICGLLKRERFEDALKLFQE-MPHRNVVSWNAMIGGYSQTGR 220 (521)
Q Consensus 148 ~l~~~~~~~g~~~~a~~~~~~~~~----~--~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 220 (521)
.+..+=.++|.+.+|...+++-.. . ....|-.+-..|+..+++|....+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 344455678888999998888421 1 112233344488888888888777773 333332 234455667899
Q ss_pred hHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHhcCCHHHHHHHH
Q 009967 221 NEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGN-SLISFYAKCGSMEDSLLVF 298 (521)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~ 298 (521)
+..|...|+.+.+.+ |+ ..+++-++......|.++...-..+-......+ ....++ .=+.+--+.++|+......
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se-~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSE-EVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhccCH-HHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999998865 44 667777777777777777666544443332221 222222 2244456777887777766
Q ss_pred hhcCCCChhHHHHH--HHHHHHcC--ChHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHhhccHHHHHHHHH
Q 009967 299 DKLTERNIVTWNAV--ICGYAQNG--RGEEAIEFFERMRINGIRP--------N-GVTLLGLLWACNHTGLVEKGYSYFS 365 (521)
Q Consensus 299 ~~~~~~~~~~~~~l--i~~~~~~~--~~~~A~~~~~~m~~~~~~p--------~-~~~~~~ll~~~~~~~~~~~a~~~~~ 365 (521)
. ..+..+|.+. +....+.. |.-.-.+..+.+++.-+.| + ...|..++....-. +.+.-.+.+.
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK 1617 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 6 4455555554 22222222 2111112333333211111 0 11233333322111 1111111111
Q ss_pred HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh----CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD----LPFDPG-----IGFWKALLGGCQIHSNVELGEFAARRIL 436 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (521)
..........+..-|..-+..-....+..+-+--+++ ...+|+ ...|-..++.....|.++.|...+-.+.
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 1100000001111122111111111111111111111 111222 3478888888999999999999998888
Q ss_pred hcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 437 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (521)
+.. -+.++.-.+..+...|+-..|..++++..+....
T Consensus 1698 e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1698 ESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 876 4677888999999999999999999998866543
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.97 E-value=0.39 Score=38.83 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=44.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC
Q 009967 79 IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158 (521)
Q Consensus 79 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 158 (521)
+++.+.+.+.+......++.+...+...+....+.++..|++.++.+...++++. .+..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555555666666666666666555444555666666666666655666555541 111222344555555565
Q ss_pred HHHHHHHhhcC
Q 009967 159 IEEATRVFEDT 169 (521)
Q Consensus 159 ~~~a~~~~~~~ 169 (521)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555444
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.96 E-value=2.7 Score=30.65 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385 (521)
Q Consensus 322 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 385 (521)
.=++.+-++.+....+.|+.......+++|.+.+++..|.++++-++.+.+. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3355666666666778888888888888888888888888888887655552 4445665554
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.86 E-value=18 Score=34.30 Aligned_cols=54 Identities=9% Similarity=0.008 Sum_probs=31.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967 211 MIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVK 268 (521)
Q Consensus 211 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 268 (521)
.+.+..+.|+++...+........ .++...+..+... ..++.+.+..+.+.+..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356777888888855544444322 1333334333333 67778877777766654
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.69 E-value=2.6 Score=27.03 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhccC
Q 009967 445 SYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREFEL 521 (521)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 521 (521)
.+..++-++.+.|++++|.++.+.+.+. .|+..+.......+.+.+++.+|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567888999999999999999998753 46667777777777777776653
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.60 E-value=0.58 Score=24.75 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHH
Q 009967 444 SSYVMLSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~ 467 (521)
.+...++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777777665
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.54 E-value=6.4 Score=28.95 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 009967 183 GLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG 235 (521)
Q Consensus 183 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 235 (521)
.+...|++++|..+.+.+.-||...|.++.. .+.|-.++...-+..|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4556666666666666666666666665543 35565666666665665554
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.30 E-value=30 Score=35.97 Aligned_cols=176 Identities=13% Similarity=0.147 Sum_probs=88.5
Q ss_pred HHHHHHHHhHH-CCCCCChh--hHHHHHHHHc-CCCChHHHHHHHHHHHHhCCCCcHH-----HHHHHHHHHHcCCCHHH
Q 009967 91 EAIYLFSRMLL-LNIRPSEF--TFGSVIPSST-ALEDLNLGKQLHAWATKVGLQSNVF-----VGSAILDLYIKLSSIEE 161 (521)
Q Consensus 91 ~A~~~~~~m~~-~~~~p~~~--~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 161 (521)
.|++.++-+.+ ..++|... ++..+...+. ...+++.|+..+++....--.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 35556666653 33333322 3444444443 6678888888888665433222221 2234556666666555
Q ss_pred HHHHhhcCCC----CCchhHH----HH-HHHHHcCCCHHHHHHHHhhCCC-------CChhHHHHHHHHH--HhcCChHH
Q 009967 162 ATRVFEDTHN----PNVVSYT----TM-ICGLLKRERFEDALKLFQEMPH-------RNVVSWNAMIGGY--SQTGRNEE 223 (521)
Q Consensus 162 a~~~~~~~~~----~~~~~~~----~l-i~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~~--~~~~~~~~ 223 (521)
|.+.+++..+ .....|. .+ +..+...++...|.+.++.+.. +...++..++.+. .+.+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 7777766554 1111222 22 1222233677777777776543 2223333343333 34455666
Q ss_pred HHHHHHHHHHCC--C-------CCChhhHHHHHHHHH--hhcchHHHHHHHHHHH
Q 009967 224 AVNLFIEMLREG--L-------VPNHSTLPCAIIAAA--NIAALGMGKSFHACAV 267 (521)
Q Consensus 224 a~~~~~~m~~~~--~-------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 267 (521)
+.+.++.+.... + .|...++..++..++ ..|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 766666653321 1 233445555555443 4555556665555543
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.08 E-value=24 Score=34.53 Aligned_cols=240 Identities=11% Similarity=0.025 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcch------HHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCCHH-
Q 009967 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAAL------GMGKSFHACAVKFL-G-KLDVFVGNSLISFYAKCGSME- 292 (521)
Q Consensus 222 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~- 292 (521)
+....+|++..+ ..|+...+...|..|...-.. ....-+++...+.+ . +.....|..+.-+++..+...
T Consensus 299 s~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 344566666655 345666666666666544332 22233333333321 1 223445555555555555433
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc-HHHH--HHHHHHc
Q 009967 293 DSLLVFDKLTERNIVTWNAVICGYAQN-GRGEEA-IEFFERMRINGIRPNGVTLLGLLWACNHTGL-VEKG--YSYFSQA 367 (521)
Q Consensus 293 ~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a--~~~~~~~ 367 (521)
.|..+-.+....+...|-.-++..... .+++-- ..++......-..+-...|+... .++ .... ..++...
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 344444455555666666555554432 122211 12222333221122222333322 122 1111 1223333
Q ss_pred hHhCCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 009967 368 KLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYDLPF--DPGIGFWKALLGGCQ--IHSNVELGEFAARRILALDPED 442 (521)
Q Consensus 368 ~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~ 442 (521)
. ..+ .|+..+ -+.+++-+.+.|-..+|...+..+.. +|....+..++..-. ..-+..-+..+|+.+......+
T Consensus 452 ~-s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 452 L-SVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred H-Hhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 2 222 244443 45678888889999999999887542 566777887776522 2234778889999988855578
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 443 VSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+..|......-...|..+.+-.++.+..
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 9999888888888888888877765543
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.97 E-value=3.9 Score=34.69 Aligned_cols=72 Identities=19% Similarity=0.059 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHHcCCCHHHH
Q 009967 90 EEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG---LQSNVFVGSAILDLYIKLSSIEEA 162 (521)
Q Consensus 90 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a 162 (521)
+.|.+.|-.+...+.--++.....+...|. ..+.++++.++...++.. -.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554443333333333333332 455566666655555431 244555566666666666555554
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.90 E-value=3.7 Score=37.06 Aligned_cols=76 Identities=9% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHH-----hCCCCcHHHHHHHH
Q 009967 76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK-----VGLQSNVFVGSAIL 150 (521)
Q Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 150 (521)
+..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344555555666666666666666543 34556666666666666666666666666554 35556555554444
Q ss_pred HH
Q 009967 151 DL 152 (521)
Q Consensus 151 ~~ 152 (521)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.47 E-value=0.78 Score=25.62 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 445 SYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
++..++.++.+.|++++|.++|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678899999999999999999998865
No 329
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.44 E-value=3.4 Score=39.94 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=62.3
Q ss_pred HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHH-HHHhcCCHHHHHHHHH
Q 009967 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-IGFWKALLG-GCQIHSNVELGEFAAR 433 (521)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~-~~~~~g~~~~A~~~~~ 433 (521)
..+...+|+.+..+.+ -|+..|...+..+.+.+.+.+.-.+|.+|. ..|+ +..|-.-+. -+-.+-+++.|..+|.
T Consensus 87 ~~rIv~lyr~at~rf~--~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFN--GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence 3455666666644443 477788888877777777888888887753 2333 233332222 2444556888889999
Q ss_pred HHHhcCCCCchHHHHHHHH
Q 009967 434 RILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 434 ~~~~~~p~~~~~~~~l~~~ 452 (521)
+.++.+|++|..|....+.
T Consensus 165 rgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 165 RGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHhhcCCCChHHHHHHHHH
Confidence 9999888888887776665
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.09 E-value=2.6 Score=38.60 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC
Q 009967 313 ICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391 (521)
Q Consensus 313 i~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (521)
..-|.++|.+++|+..|..... +.| |.+++..-..+|.+...+..|+.-...+..... .-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--LYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHHh
Confidence 4568999999999999998776 456 888888888899999999888776665541111 11122333333333345
Q ss_pred CHHHHHHHHhh-CCCCCC
Q 009967 392 RFKEAKEFLYD-LPFDPG 408 (521)
Q Consensus 392 ~~~~A~~~~~~-~~~~~~ 408 (521)
...+|.+-++. +.++|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 55555555544 234666
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.02 E-value=1.1 Score=26.67 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
..+++.++.+|...|++++|..++++..+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999998653
No 332
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=2.4 Score=36.80 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=21.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
.+.++++.+..--++++++.|+.......++.++.....+++|+..+.+.
T Consensus 55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444443
No 333
>PRK09687 putative lyase; Provisional
Probab=87.87 E-value=22 Score=32.61 Aligned_cols=73 Identities=7% Similarity=-0.028 Sum_probs=32.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 351 (521)
+..+-...+.++.+.|+......+.+.+..++ .....+.++...|+. +|...+..+... .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 44444445555555555333333333333333 223445555555553 455555555542 24544444444433
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=9.7 Score=37.91 Aligned_cols=150 Identities=14% Similarity=0.074 Sum_probs=87.6
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Q 009967 286 AKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFS 365 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 365 (521)
.-.|+++.|..++..+.++. -+.++..+-++|-.++|+++- ..||.. | ....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~s-------~D~d~r-F----elal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALELS-------TDPDQR-F----ELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchhh---hhhHHhHhhhccchHhhhhcC-------CChhhh-h----hhhhhcCcHHHHHHHHH
Confidence 34567777776666655322 233444455566665555431 122222 2 22345677777777766
Q ss_pred HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 445 (521)
+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+.-..+-....+.+..|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 542 44457778888888888888887776643 25556666666677665555555555554433
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 009967 446 YVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
....+|...|+++++.+++.+
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 233456667777777776655
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.47 E-value=7.1 Score=32.45 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=36.5
Q ss_pred CCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 406 DPGI-GFWKALLGGCQIHS-----------NVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 406 ~~~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
+|+. .++..+..++...+ .+++|...|+++.+.+|+ -.+|..-+... +.|-++..++.+.+
T Consensus 65 ~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~-ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 65 NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPN-NELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 5653 35555555543322 366778888888889994 45555555554 45777777777666
Q ss_pred Ccc
Q 009967 474 MTR 476 (521)
Q Consensus 474 ~~~ 476 (521)
..+
T Consensus 138 ~~~ 140 (186)
T PF06552_consen 138 LGQ 140 (186)
T ss_dssp S--
T ss_pred hhh
Confidence 443
No 336
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.46 E-value=1.1 Score=25.60 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHH
Q 009967 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163 (521)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 163 (521)
++.++.. |-+...|+.+..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444433 455667777777777777777764
No 337
>PRK10941 hypothetical protein; Provisional
Probab=87.45 E-value=7.6 Score=35.15 Aligned_cols=63 Identities=16% Similarity=0.031 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
..+.+-.+|.+.++++.|++..+.++...|+++.-+..-+-.|.+.|.+..|..=++..++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345555678899999999999999999999999999999999999999999999888876653
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.32 E-value=1.6 Score=24.59 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 444 SSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
.+|..++..|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998765
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.30 E-value=2 Score=38.85 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=54.1
Q ss_pred hhhhcccCCChhHHHHHhccCCC-CCc-----ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD-LNV-----VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 121 (521)
++..-.....+++++..+=++.. |+. .+-.++++.+.+ -++++++.++..=.+.|+-||.++++.+|..+.+.
T Consensus 70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~ 148 (418)
T KOG4570|consen 70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKK 148 (418)
T ss_pred hhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhc
Confidence 44455556667777666655442 211 111233333333 35667777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHHhC
Q 009967 122 EDLNLGKQLHAWATKVG 138 (521)
Q Consensus 122 ~~~~~a~~~~~~~~~~~ 138 (521)
+++..|.++...|....
T Consensus 149 ~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 149 ENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 77777777766666543
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.25 E-value=1.2 Score=28.57 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446 (521)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 446 (521)
.+.-++.+.|++++|.+..+.+++..|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 456678999999999999999999999877653
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.09 E-value=1.4 Score=27.02 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 447 VMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
..++.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467889999999999999999988654
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.83 E-value=40 Score=34.53 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHHHhcC
Q 009967 424 NVELGEFAARRILALD 439 (521)
Q Consensus 424 ~~~~A~~~~~~~~~~~ 439 (521)
+...|...++++.+.+
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 4555555555555544
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.70 E-value=13 Score=35.86 Aligned_cols=123 Identities=10% Similarity=0.017 Sum_probs=73.0
Q ss_pred hhccHHHHHH-HHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 009967 353 HTGLVEKGYS-YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 353 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 429 (521)
..|++-.|-+ ++..+ ..++..|+..... .......|+++.+...+.... +.....+...++......|++++|.
T Consensus 301 ~~gd~~aas~~~~~~l-r~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAAL-RNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHH-HhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455544433 33333 3444444443332 333456677777777766543 2344556666777777777777777
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 009967 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478 (521)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 478 (521)
...+.++...-.++.+....+-.....|-++++...|+++...+.+.+.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 7777777766556666665555556667777888778777654443333
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.55 E-value=43 Score=34.73 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 009967 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNI 306 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 306 (521)
.-..|+..|...+++..|.+++-...++++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 344588899999999999999998887554
No 345
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.88 E-value=14 Score=29.03 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHH---HHHHHhhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967 374 MLKPEHYACMVDLLSRSGRFKE---AKEFLYDLP--FDPG--IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445 (521)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 445 (521)
.++..+--.+..++.+..+.++ -+.+++++- ..|+ .....-|.-++.+.++++.++++.+.+++..|+|+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4566666667777777665443 344555532 2232 2233445556777778888888888877777766544
No 346
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.82 E-value=3.7 Score=29.92 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=20.1
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 432 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+++.++.+|+|......++..+...|++++|.+.+-++++.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555555555554433
No 347
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.55 E-value=52 Score=34.72 Aligned_cols=270 Identities=11% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHH
Q 009967 50 SCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQ 129 (521)
Q Consensus 50 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 129 (521)
..|...|+++.|.++-..-+..--..+..-.+.+.+.+++..|.++|.++ ...|..+.--+....+.+ +++
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~-~L~ 436 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER-ALR 436 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH-HHH
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC-----------------------CCchhHHHHHHHHHc
Q 009967 130 LHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN-----------------------PNVVSYTTMICGLLK 186 (521)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~li~~~~~ 186 (521)
.|-.=+=..++|...+-..++..+.-.-.+++--.+-..-.+ .+...+.+....+..
T Consensus 437 ~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~ 516 (911)
T KOG2034|consen 437 TFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLAS 516 (911)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH
Q ss_pred CCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH-------------------------HHHHHCCCCCChh
Q 009967 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF-------------------------IEMLREGLVPNHS 241 (521)
Q Consensus 187 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-------------------------~~m~~~~~~p~~~ 241 (521)
.|+.+.+..+-.-+.+ |..++.-+...+.+++|++++ ......+-..+..
T Consensus 517 ~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~ 591 (911)
T KOG2034|consen 517 HGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSAWMAQKDLDPNR 591 (911)
T ss_pred ccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHHHHHccccCchh
Q ss_pred hHHHHHHHHHhh---cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--cCCHHHHHHHHhhcCCCChhHHHHHHHHH
Q 009967 242 TLPCAIIAAANI---AALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK--CGSMEDSLLVFDKLTERNIVTWNAVICGY 316 (521)
Q Consensus 242 ~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 316 (521)
....++..+.+. .....+..+++.....-...++..+|.++..|++ ..+.-.=.+.-..+......-..--+..|
T Consensus 592 li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~alRlc 671 (911)
T KOG2034|consen 592 LIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYALRLC 671 (911)
T ss_pred hhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHHHHHHH
Q ss_pred HHcCChHHHHHHHHHHH
Q 009967 317 AQNGRGEEAIEFFERMR 333 (521)
Q Consensus 317 ~~~~~~~~A~~~~~~m~ 333 (521)
.+.+.-..+..++..|.
T Consensus 672 ~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 672 LKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHhCccceeeeHHHHHH
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.44 E-value=1.9 Score=23.14 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967 412 WKALLGGCQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 440 (521)
|..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34445555555666666666666655554
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.91 E-value=9.8 Score=32.37 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC-C-CCChhHHHHHHHHHHhcCCHHHH
Q 009967 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP-G-MLKPEHYACMVDLLSRSGRFKEA 396 (521)
Q Consensus 323 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A 396 (521)
+.|.+.|-.+...+.--+......|.. |....+.+++..++.++.+..+ - .+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 456666666665554334333333333 3334566666666665543322 1 35666666677776666666655
No 350
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.72 E-value=19 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=27.3
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 404 (521)
..++.+++..++..+.--.+-.+...++.. ..+...|+|++|.++|+++.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELL 71 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhh
Confidence 355666666666666544444444444433 23446666666666666654
No 351
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.53 E-value=31 Score=35.56 Aligned_cols=176 Identities=10% Similarity=0.135 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChh----------HHHHHHHHHHHcCCh
Q 009967 257 GMGKSFHACAVKFLGKLD---VFVGNSLISFYAKCGSMEDSLLVFDKLTE-RNIV----------TWNAVICGYAQNGRG 322 (521)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~~~~ 322 (521)
++-..++..|.+.--.|+ ..+...++-.|....+++...++.+.+.. ||.. .|.-.+.---+.|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 344456666666554444 34455566667777788888888887765 3321 122222222345677
Q ss_pred HHHHHHHHHHHHC--CCCCCHHH-----HHHH--HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH------
Q 009967 323 EEAIEFFERMRIN--GIRPNGVT-----LLGL--LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL------ 387 (521)
Q Consensus 323 ~~A~~~~~~m~~~--~~~p~~~~-----~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~------ 387 (521)
++|+.+.-.|.+. .+.||... |.-+ -..|...+..+.|.+.|++.-+..+..-...-+..|+.+-
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccc
Confidence 8888877776653 34566543 2211 1224566778888898887653332221222233333322
Q ss_pred ---------------HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967 388 ---------------SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED 442 (521)
Q Consensus 388 ---------------~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 442 (521)
++.|..+...++|+ + .....+-....|+.+|++..+.|.++.|+.
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWd-------V---~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWD-------V---ATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHh-------H---HHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 22222222222221 1 123344556789999999999999988763
No 352
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.49 E-value=2.6 Score=23.18 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 423 SNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
|+.+.|..+|++++...|.++..|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 577889999999999989888888887754
No 353
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.16 E-value=28 Score=30.43 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=34.2
Q ss_pred HHHHHHHc-CChHHHHHHHHHHHH--CCCCCCHH---HHHHHHHHHHhhccHHHHHHHHHHchHhCCC
Q 009967 312 VICGYAQN-GRGEEAIEFFERMRI--NGIRPNGV---TLLGLLWACNHTGLVEKGYSYFSQAKLEDPG 373 (521)
Q Consensus 312 li~~~~~~-~~~~~A~~~~~~m~~--~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 373 (521)
+...|-.. .+++.|+..|+..-+ .|-..+.. .+..+...-...+++.+|..+|+++. ...+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva-~~s~ 185 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA-RSSL 185 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 33344333 566777777776554 22222222 23333333466788999999999885 4443
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.59 E-value=33 Score=34.47 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=47.6
Q ss_pred cCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHH
Q 009967 186 KRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHAC 265 (521)
Q Consensus 186 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 265 (521)
+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..++-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 4455555555544332 445566666666666666666666655433 23344444444554444444444
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 266 AVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300 (521)
Q Consensus 266 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 300 (521)
..+.|.. |...-+|...|+++++.+++..
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 4443322 2223334444555555444433
No 355
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.10 E-value=48 Score=35.48 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhHH
Q 009967 74 VSATTIIGRFAKQHHYEEAIYLFSRMLL 101 (521)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 101 (521)
..|..|+..|...|+.++|+++|.+...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 4688899999999999999999999876
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.09 E-value=55 Score=32.29 Aligned_cols=175 Identities=12% Similarity=0.036 Sum_probs=94.7
Q ss_pred CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 009967 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVIC 314 (521)
Q Consensus 238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 314 (521)
.|...+.+++..+.....+.-++.+-.++..-|- +...+..++++|... ..+.-..+|+++.+ .|++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 4455555666666666666666666666655542 345566666766666 44555556665544 33333344444
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967 315 GYAQNGRGEEAIEFFERMRINGIRP--N---GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~~~~p--~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (521)
.|-+ ++.+.+...|.++...=++- + ...|..+... -..+.+....+...+....|...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 66666666666655432210 1 1133333321 1345666666666666555554455556666677777
Q ss_pred cCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 009967 390 SGRFKEAKEFLYDLP--FDPGIGFWKALLGG 418 (521)
Q Consensus 390 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 418 (521)
..++++|++++..+. .+.|..+-..++..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 777888888777543 13344444444443
No 357
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=81.26 E-value=6.9 Score=35.36 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=58.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCC
Q 009967 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRN 498 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (521)
..+.|+.++|..+|+.++.+.|+++.++..++......++.-+|-++|-+ .+..+|+.+-.+ ++.++-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~----ALtisP~nseAL--------vnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK----ALTISPGNSEAL--------VNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe----eeeeCCCchHHH--------hhhhcc
Confidence 45678889999999999999999998888888887777777778777765 344455555443 334445
Q ss_pred CCCcHHHHHHHHHHHH
Q 009967 499 HHMNDEIYAVLRSCTE 514 (521)
Q Consensus 499 ~~~~~~i~~~l~~~~~ 514 (521)
-|-+.+|-+.+=+.+.
T Consensus 194 ~plV~~iD~r~l~svd 209 (472)
T KOG3824|consen 194 TPLVSAIDRRMLRSVD 209 (472)
T ss_pred chHHHHHHHHHHHHHH
Confidence 5666666555444433
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.11 E-value=3.3 Score=21.81 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=8.9
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 009967 382 CMVDLLSRSGRFKEAKEFL 400 (521)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~ 400 (521)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444445544444444
No 359
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.86 E-value=14 Score=27.38 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 223 EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 223 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
+..+-++.+...++.|++....+.+.+|.+.+++..|.++++-+....-. ....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence 44555555555667777777777777777777777777777766544322 1225555444
No 360
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.84 E-value=59 Score=31.84 Aligned_cols=152 Identities=16% Similarity=0.042 Sum_probs=89.9
Q ss_pred HHHHcCChHHHHHHHHHHHHC-CCCCCH-------HHHHHHHH-HHHhhccHHHHHHHHHHchHhC-CCCCChhHHHHHH
Q 009967 315 GYAQNGRGEEAIEFFERMRIN-GIRPNG-------VTLLGLLW-ACNHTGLVEKGYSYFSQAKLED-PGMLKPEHYACMV 384 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~-~~~p~~-------~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~ 384 (521)
+-.-.|++.+|++-+..|.+. .-.|.. .....++. .|...+-++.|+.-|..+.+.. ........-..+.
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 334578888888888888762 112331 12223333 3456677888888777665222 1112222334567
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHH--------HHHH--HHhcCCHHHHHHHHHHHHhcCCC------CchHHHH
Q 009967 385 DLLSRSGRFKEAKEFLYDLPFDPGIGFWKA--------LLGG--CQIHSNVELGEFAARRILALDPE------DVSSYVM 448 (521)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------l~~~--~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~ 448 (521)
..|.+.|+-+.--++++.+. .++..++.. ++.+ ....+++.+|...+.+.++.... ..-.+..
T Consensus 412 i~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 77888888888888888876 333221111 1122 34678999999999888875411 2234455
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 009967 449 LSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~ 467 (521)
|+..+...|+..++.....
T Consensus 491 Ls~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHhcchHHHHhccc
Confidence 6666777788777766544
No 361
>PRK12798 chemotaxis protein; Reviewed
Probab=80.39 E-value=57 Score=31.37 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=114.3
Q ss_pred cCCHHHHHHHHhhcCC----CChhHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhhccHH
Q 009967 288 CGSMEDSLLVFDKLTE----RNIVTWNAVICGYA-QNGRGEEAIEFFERMRINGIRPNG----VTLLGLLWACNHTGLVE 358 (521)
Q Consensus 288 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~ 358 (521)
.|+..++.+.+..+.. +....|-.|+.+-. ...+...|+++|+...-. -|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888899999888874 34456777766644 456899999999986542 3432 24455555667888988
Q ss_pred HHHHHHHHchHhCCCCCChhHHH-HHHHHHHhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009967 359 KGYSYFSQAKLEDPGMLKPEHYA-CMVDLLSRSG---RFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARR 434 (521)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 434 (521)
++..+-.+....+...|-..-|. .+...+.+.+ ..+....++..|.-.-....|-.+...-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 87776666554555445444332 3333343333 4455566666665233345888888888889999999999999
Q ss_pred HHhcCCC----CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 435 ILALDPE----DVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 435 ~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
+..+... .......-+-+-.-..+.+++.+.+..+-.
T Consensus 283 A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9886532 111222222223345667788877776443
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.83 E-value=13 Score=28.72 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385 (521)
Q Consensus 324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 385 (521)
+..+-++.+....+.|+.......+++|.+.+|+..|.++|+-++.+.| +....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Confidence 3445556666677889999999999999999999999999998876665 44445665543
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.73 E-value=16 Score=31.53 Aligned_cols=76 Identities=8% Similarity=-0.044 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhC--CCCcHHHHHHHHHH
Q 009967 76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG--LQSNVFVGSAILDL 152 (521)
Q Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 152 (521)
.+..++.+.+.+...+++...+.-++.+ +.|...-..++..++-.|++++|..-++..-+.. ..+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445666777777777777777666653 3455555666777777777777777666655532 22334455555544
No 364
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.78 E-value=11 Score=34.39 Aligned_cols=99 Identities=10% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCC---CCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHH
Q 009967 71 LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN---IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGS 147 (521)
Q Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 147 (521)
.++.+-..++..-....+++.++..+-+++... ..|+... ..+++.|. .-++++++.++..=++.|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 345566666666666778888888887776431 1122222 22333333 346779999999889999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCC
Q 009967 148 AILDLYIKLSSIEEATRVFEDTHN 171 (521)
Q Consensus 148 ~l~~~~~~~g~~~~a~~~~~~~~~ 171 (521)
.+|+.+.+.+++.+|.++.-.|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999888766653
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.46 E-value=15 Score=33.17 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
.++.....|...|.+.+|.++-++++..+|-+...+..++..+...|+--.|..-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344555678899999999999999999999999999999999999999777777777764
No 366
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.77 E-value=52 Score=29.43 Aligned_cols=187 Identities=12% Similarity=0.081 Sum_probs=110.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhhcchHHHHHHHHHHHHc---C--CCCChhHHHHHHHHHHhc
Q 009967 217 QTGRNEEAVNLFIEMLREGLVPNH---STLPCAIIAAANIAALGMGKSFHACAVKF---L--GKLDVFVGNSLISFYAKC 288 (521)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~ 288 (521)
+..++++|+.-|++.++....-.. ..+..++....+.+++++....+.+++.- . ..-+....|++++....+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445788999999998874322222 33446677788888888888877776531 1 122445667777776666
Q ss_pred CCHHHHHHHHhhcCC-----CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHH-------HHHHHH
Q 009967 289 GSMEDSLLVFDKLTE-----RNIV----TWNAVICGYAQNGRGEEAIEFFERMRINGI----RPNGV-------TLLGLL 348 (521)
Q Consensus 289 g~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~-------~~~~ll 348 (521)
.+.+.-.++|+.-.+ .|.. |-..+...|...+.+.+..++++++...-- .-|.. .|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666655555554331 2222 334567777777888888888877765311 11221 344445
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH----HHHhcCCHHHHHH-HHhhC
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD----LLSRSGRFKEAKE-FLYDL 403 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~-~~~~~ 403 (521)
..|...++-.+...+|++........|.+.....+-. +..+.|++++|-. +|+..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 5566666666777777766544444466654443322 2345677776653 34443
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.72 E-value=5 Score=21.34 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 444 SSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.++..++.++...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999987653
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.38 E-value=10 Score=26.53 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhhccHHHHHH
Q 009967 319 NGRGEEAIEFFERMRINGIRP-NGV-TLLGLLWACNHTGLVEKGYS 362 (521)
Q Consensus 319 ~~~~~~A~~~~~~m~~~~~~p-~~~-~~~~ll~~~~~~~~~~~a~~ 362 (521)
.++.++|+..|+...+.-..| +.+ ++..++.+++..|++.+++.
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544432111 111 34444445555555444443
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.09 E-value=5.2 Score=33.21 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 425 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
+++|+.-|++++.++|+...++..++.+|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5678888999999999999999999999887643
No 370
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.04 E-value=29 Score=27.23 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=35.8
Q ss_pred HHHHHHHHHHh--cCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 427 LGEFAARRILA--LDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 427 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
.+.++|..+.. ++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888877 5666888999999999999999999999986
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.42 E-value=12 Score=32.15 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHH
Q 009967 380 YACMVDLLSRSGRFKEAKEFLYD-LPFDPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPED---VSSYVMLSNA 452 (521)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 452 (521)
.+.-+..+.+.++..+|+...++ ++.+|. ...-..++..++..|++++|..-++-+-++.|+. ...|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44456677788899999988765 555564 4466777888899999999999999888888863 3455555554
No 372
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.94 E-value=18 Score=31.70 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=31.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+...|++-++++.-.+.+...|.+..+|..-+.+....=+.++|..=|....
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 4445666666666666666666666666666666666656666666555544
No 373
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=75.84 E-value=48 Score=28.02 Aligned_cols=176 Identities=10% Similarity=0.087 Sum_probs=82.2
Q ss_pred CCCCChhhHHHHHHHHcCCC----ChHHHHHHHHHHHHhCCCCcH----HHHHHHHHHHHcCCCHHHHHHHhhcCCCCCc
Q 009967 103 NIRPSEFTFGSVIPSSTALE----DLNLGKQLHAWATKVGLQSNV----FVGSAILDLYIKLSSIEEATRVFEDTHNPNV 174 (521)
Q Consensus 103 ~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 174 (521)
|..++...++.++..+.+.. +.+-+..+-.+....++.++- .....-+..|-+.|||.+--.+|-....
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~--- 79 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM--- 79 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh---
Confidence 55666677777666654433 333333333333333433322 2222333456666666655554433321
Q ss_pred hhHHHHHHHHHcCCCHHH-----HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 009967 175 VSYTTMICGLLKRERFED-----ALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIA 249 (521)
Q Consensus 175 ~~~~~li~~~~~~g~~~~-----a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 249 (521)
++-+.++++. |+.+.++..+.....|...+..-++.-+.+++-+.+- -.+=.+++..
T Consensus 80 --------gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~ 141 (233)
T PF14669_consen 80 --------GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYS 141 (233)
T ss_pred --------hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHH
Confidence 1111111111 2233333333334445555555555444444333220 0111245556
Q ss_pred HHhhcchHHHHHHHHHHHHcCCC--------------CChhHHHHHHHHHHhcCCHHHHHHHHh
Q 009967 250 AANIAALGMGKSFHACAVKFLGK--------------LDVFVGNSLISFYAKCGSMEDSLLVFD 299 (521)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 299 (521)
|.+..++.++.++++.+.+..+. +.-.+.|.....+.++|.++.|..+++
T Consensus 142 Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 142 YHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 66667777777777766654322 233445555666666666666666665
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.65 E-value=8.4 Score=27.00 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=31.3
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChh-HHHHHHHHHHhcCCHHHHHHH
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEF 399 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 399 (521)
...+.++|+..|..+.++..-.++.. ++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888887765544333322 566777777777877777665
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.45 E-value=31 Score=25.60 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=44.9
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009967 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345 (521)
Q Consensus 282 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 345 (521)
+..+.+.|++++|..+.+...-||...|..+-. .+.|-.+.+..-+.+|...| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345678899999999988888888888877654 46677777777787887776 45544443
No 376
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.46 E-value=1.1e+02 Score=31.44 Aligned_cols=271 Identities=12% Similarity=0.036 Sum_probs=141.7
Q ss_pred HHHHHHHHhhCCCC-ChhHHHHHHHH-----HHhcCChHHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHhhc--
Q 009967 190 FEDALKLFQEMPHR-NVVSWNAMIGG-----YSQTGRNEEAVNLFIEMLR-------EGLVPNHSTLPCAIIAAANIA-- 254 (521)
Q Consensus 190 ~~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-- 254 (521)
...|.++++...+. +...-..+..+ +....|.+.|+.+|+.+.. .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766652 33333333322 3355678888888888766 44 2334445555555532
Q ss_pred ---chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHhhcCC-CChhHHHHHHHHHH----HcCChH
Q 009967 255 ---ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC---GSMEDSLLVFDKLTE-RNIVTWNAVICGYA----QNGRGE 323 (521)
Q Consensus 255 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~~~~~ 323 (521)
+...|..++....+.|.+ +.. -.+..+|... .+...|.++|....+ -.+..+-.+..+|. ...+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 556678888877777643 222 2233333332 356788888887765 23333333333332 234678
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHH-HHHH---HHh----cCCHHH
Q 009967 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYAC-MVDL---LSR----SGRFKE 395 (521)
Q Consensus 324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~---~~~----~g~~~~ 395 (521)
.|..++++..+.| .|...--...+..+.. +.++.+.-.+..+. ..+.. ...+-.. +... ... ..+.+.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a-~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA-ELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH-Hhhhh-HHhhHHHHHHHhccccccccccccchhH
Confidence 8888888888777 3332222222233333 55555554444442 22211 1111111 1110 011 124455
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc---CChHHHHHHHHH
Q 009967 396 AKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPEDVSSYVMLSNALSVA---GKWDNVSNIRRE 468 (521)
Q Consensus 396 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 468 (521)
+...+.+....-+......+...|.. ..+++.|...+..+.... ......++..+... .++..|.+++++
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 55555555434444444444444332 236777888887777765 55556666665542 116778888877
Q ss_pred HHhCC
Q 009967 469 MKEKG 473 (521)
Q Consensus 469 m~~~g 473 (521)
..+.+
T Consensus 535 ~~~~~ 539 (552)
T KOG1550|consen 535 ASEED 539 (552)
T ss_pred HHhcC
Confidence 66543
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.42 E-value=67 Score=29.07 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-------HHHHHHHHHhhcchHHHHHHHHHH----HHcCCCCChhHH
Q 009967 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST-------LPCAIIAAANIAALGMGKSFHACA----VKFLGKLDVFVG 278 (521)
Q Consensus 210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~ 278 (521)
-+.+...+.+++++|+..|.+....|+..+..+ ...+...|...|+.....+..... .....+....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 345667788899999999999999887776654 344556666777665544433322 222222244455
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhhcCC----CCh-----hHHHHHHHHHHHcCChHHHHHHHHH----HHHCCCCCCHHHH
Q 009967 279 NSLISFYAKC-GSMEDSLLVFDKLTE----RNI-----VTWNAVICGYAQNGRGEEAIEFFER----MRINGIRPNGVTL 344 (521)
Q Consensus 279 ~~l~~~~~~~-g~~~~A~~~~~~~~~----~~~-----~~~~~li~~~~~~~~~~~A~~~~~~----m~~~~~~p~~~~~ 344 (521)
.+|+..+-.. ..++.-+.+.....+ .+. ..-..++..+.+.|.+.+|+.+... +.+..-+|+-.+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 5566555433 345555555554443 111 1223467777888888888876554 4445556665544
Q ss_pred HHHH-HHHHhhccHHHHHHHHHHc
Q 009967 345 LGLL-WACNHTGLVEKGYSYFSQA 367 (521)
Q Consensus 345 ~~ll-~~~~~~~~~~~a~~~~~~~ 367 (521)
..+= .+|....++.++..-+..+
T Consensus 168 hllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHH
Confidence 3332 2355555555554444433
No 378
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=73.42 E-value=54 Score=30.01 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----------cCCHHH
Q 009967 326 IEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----------SGRFKE 395 (521)
Q Consensus 326 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 395 (521)
.++|+.|...++.|.-..|..+.-.+...=.+.....+|+.+. . |+.-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~-s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL-S-----DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh-c-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4567777777788887777776666666667777888887775 2 22225545544432 355666
Q ss_pred HHHHHhhCC
Q 009967 396 AKEFLYDLP 404 (521)
Q Consensus 396 A~~~~~~~~ 404 (521)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 666655543
No 379
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.30 E-value=2.6 Score=38.66 Aligned_cols=114 Identities=16% Similarity=0.076 Sum_probs=53.6
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELGEF 430 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 430 (521)
..|.++.|++.|...+...+ +....|..-..++.+.+++..|++-++. +.+.||.. .|-.-..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 44566666666665543332 3333444444555555555555555543 22344332 23222333444556666666
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
.+..+.+++- +..+=..+-...-+.++.++-...+++.
T Consensus 204 dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 204 DLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHH
Confidence 6666655544 3333333333344444444444444443
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.62 E-value=56 Score=29.49 Aligned_cols=17 Identities=18% Similarity=0.265 Sum_probs=8.7
Q ss_pred HHHHHhcCChHHHHHHH
Q 009967 212 IGGYSQTGRNEEAVNLF 228 (521)
Q Consensus 212 ~~~~~~~~~~~~a~~~~ 228 (521)
|.+++..+++.+++...
T Consensus 90 IQALAEmnrWreVLsWv 106 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWV 106 (309)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 44555555555555443
No 381
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.60 E-value=9.8 Score=23.29 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=13.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 009967 312 VICGYAQNGRGEEAIEFFERMRIN 335 (521)
Q Consensus 312 li~~~~~~~~~~~A~~~~~~m~~~ 335 (521)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555666666666666655543
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.43 E-value=82 Score=30.41 Aligned_cols=49 Identities=8% Similarity=-0.012 Sum_probs=22.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hhccHHHHHHHHHHc
Q 009967 318 QNGRGEEAIEFFERMRINGIRPNGV--TLLGLLWACN--HTGLVEKGYSYFSQA 367 (521)
Q Consensus 318 ~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~ 367 (521)
+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++..
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445555555555555554 333332 2223333332 223444555555544
No 383
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.01 E-value=95 Score=29.72 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 009967 415 LLGGCQIHSNVELGEFAARRILALDPE-DVSSYVMLSNALS-VAGKWDNVSNIRREMKE 471 (521)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 471 (521)
.+..+.+.|-+..|.+..+-+..++|. ||......++.|. ++++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445577888888888888888888888 8877777777765 66777777777776544
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.80 E-value=78 Score=28.64 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 353 (521)
++.....+...|.+.|++.+|+..|-.-..++...+..++......|...++ +...-..++ -|..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHH
Confidence 6777888888999999998888877655444433332233222222222222 112222222 3455
Q ss_pred hccHHHHHHHHHHchHh
Q 009967 354 TGLVEKGYSYFSQAKLE 370 (521)
Q Consensus 354 ~~~~~~a~~~~~~~~~~ 370 (521)
.++...|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67778787777666533
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.71 E-value=78 Score=28.63 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967 175 VSYTTMICGLLKRERFEDALKLFQEMP 201 (521)
Q Consensus 175 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 201 (521)
.....+...|.+.|++.+|+..|-.-.
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 334444444444555544444444433
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.65 E-value=15 Score=27.02 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=37.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC----C-----chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 419 CQIHSNVELGEFAARRILALDPE----D-----VSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
..+.||+..|.+.+.+..+.... . ..+...++......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34678888887777777663221 1 234556777788889999999999987653
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.29 E-value=12 Score=37.23 Aligned_cols=91 Identities=5% Similarity=-0.008 Sum_probs=44.1
Q ss_pred HHHHHHHHc-CCCChHHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHcCCCHHHHHHHhhcCCC-CCc--hhHHHHHHHHH
Q 009967 111 FGSVIPSST-ALEDLNLGKQLHAWATKVGLQSN-VFVGSAILDLYIKLSSIEEATRVFEDTHN-PNV--VSYTTMICGLL 185 (521)
Q Consensus 111 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~--~~~~~li~~~~ 185 (521)
+..+...|. ..|+..+|...+....-..-+.. ....-++...+.+.|...+|--++....+ .+. ..+..+.++++
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a 294 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA 294 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence 344444443 34666666666655443221111 12233455556666766666666654443 111 11444555555
Q ss_pred cCCCHHHHHHHHhhCC
Q 009967 186 KRERFEDALKLFQEMP 201 (521)
Q Consensus 186 ~~g~~~~a~~~~~~~~ 201 (521)
..+++......|+...
T Consensus 295 ml~~~N~S~~~ydha~ 310 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHAL 310 (886)
T ss_pred HHhhhhhhhhhhhhhh
Confidence 5555555555555443
No 388
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.80 E-value=40 Score=24.86 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHH
Q 009967 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAV 267 (521)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 267 (521)
.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-+.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455566666666777777777777777777777777777777665
No 389
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=70.79 E-value=61 Score=29.92 Aligned_cols=50 Identities=16% Similarity=0.026 Sum_probs=24.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhhccHHHHHHHHHH
Q 009967 315 GYAQNGRGEEAIEFFERMRINGIRPNGV---TLLGLLWACNHTGLVEKGYSYFSQ 366 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~ 366 (521)
+-.+.|+..+|.+.++++.+. .|-.. .-..++.+|....-+.+...++.+
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566666777666665543 12211 222455555555444444444443
No 390
>PF13934 ELYS: Nuclear pore complex assembly
Probab=70.73 E-value=60 Score=28.59 Aligned_cols=116 Identities=15% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 009967 342 VTLLGLLWA--CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGC 419 (521)
Q Consensus 342 ~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 419 (521)
..|..++.+ +...++++.|.+.+..-. ..+..-..++.++.+.|+.+.|+.+++..+-......-..+....
T Consensus 77 ~~~~~~~~g~W~LD~~~~~~A~~~L~~ps------~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 77 PKYIKFIQGFWLLDHGDFEEALELLSHPS------LIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHhCCCC------CCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH----hcCChHHHHHH
Q 009967 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALS----VAGKWDNVSNI 465 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~----~~g~~~~A~~~ 465 (521)
..++.+.+|..+-+...+ +.....+..+...+. +.++.++-..+
T Consensus 151 La~~~v~EAf~~~R~~~~--~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPD--ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHcCCHHHHHHHHHhCch--hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.46 E-value=67 Score=29.04 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=22.0
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH-----hcCCHHHHHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS-----RSGRFKEAKEFL 400 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~ 400 (521)
|.+.+++..+.++-..-. ..+-+-+..-|..++..|. -.|.+++|+++.
T Consensus 128 ysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 128 YSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 555555555554444443 2222222222444444433 345666665555
No 392
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.12 E-value=26 Score=28.14 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCC-----CCCChhhHHHHHHHHcCCCC-hHHHHHHHHHHHHhCCCCcHHHHHHH
Q 009967 76 ATTIIGRFAKQHHYEEAIYLFSRMLLLN-----IRPSEFTFGSVIPSSTALED-LNLGKQLHAWATKVGLQSNVFVGSAI 149 (521)
Q Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 149 (521)
.|.++.-....+++...+.+++.+.... -..+...|..++++.+.... --.+..+|..+.+.+.+++...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444455555555555555543210 02344455666665544443 23345555555555555566666666
Q ss_pred HHHHHc
Q 009967 150 LDLYIK 155 (521)
Q Consensus 150 ~~~~~~ 155 (521)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 655544
No 393
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=69.91 E-value=12 Score=26.79 Aligned_cols=62 Identities=6% Similarity=0.025 Sum_probs=45.9
Q ss_pred hHHHHHHHhhcCCCchh-hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHH
Q 009967 31 TQKASVQKLETPAIRTD-SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA 92 (521)
Q Consensus 31 ~~~~~~~~~~~g~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 92 (521)
...+.+.++..|.++.+ .-..-+..-+.+.|.++++.++..+..+|..+.+++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 45678888888866666 333334556688899999999888888999998888887765544
No 394
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.47 E-value=4.1 Score=39.21 Aligned_cols=102 Identities=11% Similarity=0.046 Sum_probs=71.4
Q ss_pred HHHHHhhccHHHHHHHHHHchHhCCCCCChhH-HHHHHHHHHhcCCHHHHHHHHhh-CCCCCCH-HHHHHHHHHHHhcCC
Q 009967 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEH-YACMVDLLSRSGRFKEAKEFLYD-LPFDPGI-GFWKALLGGCQIHSN 424 (521)
Q Consensus 348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~ 424 (521)
+..+...+.++.|..++.++++.. |+-.. |..=..++.+.+++..|+.-..+ ++..|.. ..|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld---pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD---PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC---CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 344567788999999999887444 54433 33334778888888888876655 4445543 355555567788889
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 425 VELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 425 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
+.+|...|+......|+++.+...+-.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 9999999999999999888765555443
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.11 E-value=40 Score=24.26 Aligned_cols=39 Identities=8% Similarity=0.087 Sum_probs=26.2
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 009967 287 KCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326 (521)
Q Consensus 287 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 326 (521)
..|+.+.|.+++..+. ..+..|..+++++...|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4567777777777777 66667777777777666655443
No 396
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.82 E-value=47 Score=24.98 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhC
Q 009967 121 LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEM 200 (521)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 200 (521)
....++|..+.+.+...+. ....+--+.+..+.+.|++++|...=.....||...|-.|- -.+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 3456677777777666552 23333333444566677777773332333335555554432 23556666666666655
Q ss_pred CC
Q 009967 201 PH 202 (521)
Q Consensus 201 ~~ 202 (521)
..
T Consensus 96 a~ 97 (116)
T PF09477_consen 96 AS 97 (116)
T ss_dssp CT
T ss_pred Hh
Confidence 44
No 397
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=68.21 E-value=12 Score=27.19 Aligned_cols=59 Identities=8% Similarity=0.117 Sum_probs=43.3
Q ss_pred chHHHHHHHhhcCCCchh-hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCC
Q 009967 30 ETQKASVQKLETPAIRTD-SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHH 88 (521)
Q Consensus 30 ~~~~~~~~~~~~g~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 88 (521)
....+...++..|.++++ .-...+..-+.+.+.++++.++..+..+|..+..++-..|.
T Consensus 21 ~~~~v~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 21 VLDELLIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 355678888888866666 33333455667888888888888888888888888866554
No 398
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.99 E-value=28 Score=31.50 Aligned_cols=52 Identities=23% Similarity=0.144 Sum_probs=23.7
Q ss_pred HHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHH
Q 009967 81 GRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133 (521)
Q Consensus 81 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 133 (521)
+.|..+|.+.+|.++-++..+.. +.+...+..+++.++..|+--.+.+-++.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 34444555555555554444432 33444444444445544544444443333
No 399
>PRK13342 recombination factor protein RarA; Reviewed
Probab=67.50 E-value=1.3e+02 Score=29.50 Aligned_cols=113 Identities=18% Similarity=0.070 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHh---CC-CCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhh
Q 009967 124 LNLGKQLHAWATKV---GL-QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199 (521)
Q Consensus 124 ~~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (521)
.+....++...... |+ ..+......++... .|+...+..+++.+...+ ..=..+...+++..
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~------------~~It~~~v~~~~~~ 218 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGV------------DSITLELLEEALQK 218 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc------------CCCCHHHHHHHHhh
Confidence 34555566554432 33 44555555554432 677777777776652210 00012222333322
Q ss_pred C---CCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 009967 200 M---PHRNVVSWNAMIGGYSQ---TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250 (521)
Q Consensus 200 ~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 250 (521)
. ...+...+..++.++.+ .++++.|+.++..|...|..|....-..+..++
T Consensus 219 ~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 219 RAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred hhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 12233344555555554 478999999999999988777644444444443
No 400
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=67.43 E-value=1.2e+02 Score=28.98 Aligned_cols=208 Identities=12% Similarity=0.101 Sum_probs=122.9
Q ss_pred cCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hh
Q 009967 288 CGSMEDSLLVFDKLTE---------RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN----HT 354 (521)
Q Consensus 288 ~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~ 354 (521)
.++.+.|.+-+-...+ .+...+..++..|...++|+.--+.+.-+.+..- -...+...++.-+. ..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrg-qlk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRG-QLKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhccCC
Confidence 5677777766555442 3345677778888888888887776666554321 12233333443322 11
Q ss_pred ccHHHHHHHHHHchH--hCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC------CC--HHHHHHHHHHHHh
Q 009967 355 GLVEKGYSYFSQAKL--EDPGML---KPEHYACMVDLLSRSGRFKEAKEFLYDLPFD------PG--IGFWKALLGGCQI 421 (521)
Q Consensus 355 ~~~~~a~~~~~~~~~--~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~--~~~~~~l~~~~~~ 421 (521)
.+.+--..+.+.++. ...+-. ....-..|...+-..|+.++|..++.+++++ .. +...-.-+..|..
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~ 183 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLL 183 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222333333333221 111111 1123345777888999999999999987631 11 1122223456888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc-------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEec
Q 009967 422 HSNVELGEFAARRILALDPEDV-------SSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVT 494 (521)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~ 494 (521)
.+|+-.|.-+-+++....-+.+ ..|..+.......+.+=++-+.++.....|--....--|+.+-..+-.|+.
T Consensus 184 ~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 184 RLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred hhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 8999999988888776433222 357777888888899999999999998877544433345555444444554
Q ss_pred CC
Q 009967 495 GD 496 (521)
Q Consensus 495 ~~ 496 (521)
-.
T Consensus 264 LA 265 (439)
T KOG1498|consen 264 LA 265 (439)
T ss_pred ec
Confidence 44
No 401
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=66.85 E-value=47 Score=24.18 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHhcCChH
Q 009967 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPE--DVSSYVMLSNALSVAGKWD 460 (521)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 460 (521)
|...-..+...+...|++++|++.+-++++.+|+ +...-..++..+...|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4456667777788888888888888888887665 4556666666666666644
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.46 E-value=1.3e+02 Score=28.97 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=86.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHhHHC--CCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHh---------CCCCcH
Q 009967 75 SATTIIGRFAKQHHYEEAIYLFSRMLLL--NIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV---------GLQSNV 143 (521)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 143 (521)
.+.-+.+.|...|+++.|++.|.+.... .-+-....|..+|....-.|+|..+..+-.+..+. .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4566777888889999999998885432 11223445566666666777877776666665543 234455
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhcCC----------CCCchhHHHHHHHHHcCCCHHHHHH-----HHhhCCCCChhHH
Q 009967 144 FVGSAILDLYIKLSSIEEATRVFEDTH----------NPNVVSYTTMICGLLKRERFEDALK-----LFQEMPHRNVVSW 208 (521)
Q Consensus 144 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~a~~-----~~~~~~~~~~~~~ 208 (521)
..+..+.+.+.+ ++..|.+.|-... .|...+....+.+++--++-+--+. .|+...+-.+..+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 556666655554 6666666553332 2333333333344433333222212 2223333344455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 009967 209 NAMIGGYSQTGRNEEAVNLFIEMLRE 234 (521)
Q Consensus 209 ~~l~~~~~~~~~~~~a~~~~~~m~~~ 234 (521)
..+...| .+++..++++++++..+
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhccc
Confidence 5555544 34577888888777654
No 403
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=65.76 E-value=17 Score=20.45 Aligned_cols=27 Identities=11% Similarity=0.346 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 009967 424 NVELGEFAARRILALDPEDVSSYVMLSN 451 (521)
Q Consensus 424 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 451 (521)
.++.|..+|++.+...| ++..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 46788888888888877 6777766654
No 404
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.93 E-value=2.2e+02 Score=31.33 Aligned_cols=245 Identities=11% Similarity=-0.020 Sum_probs=121.4
Q ss_pred CCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH-HHHHHHhhcCCCCCchhHHHHHHH
Q 009967 105 RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI-EEATRVFEDTHNPNVVSYTTMICG 183 (521)
Q Consensus 105 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~li~~ 183 (521)
.+|...-...+..+...+..+ +...+..+++ .++...-...+.++.+.+.. .....+...+..+|...-...+..
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHH
Confidence 355555555565555555433 3344444442 33444444444444433221 111122222333555554455555
Q ss_pred HHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHH-HHHH
Q 009967 184 LLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM-GKSF 262 (521)
Q Consensus 184 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~ 262 (521)
+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++...+..+. +...
T Consensus 708 L~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~ 779 (897)
T PRK13800 708 LRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDA 779 (897)
T ss_pred HHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHH
Confidence 5443211 12234455556666665666666665554332 122222 2555555556666666655432 2233
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 009967 263 HACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL-LVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG 341 (521)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 341 (521)
+..+.+ .++..+-...+.++.+.|....+. .+...+.+++..+-...+.++...+. +++...+-.+.+ .|+.
T Consensus 780 L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~ 852 (897)
T PRK13800 780 VRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHL 852 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCH
Confidence 333332 335666777777777777765443 34444445666566666677776665 345555555554 3555
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967 342 VTLLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 342 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
..-...+.++.+.+....+...+..+.
T Consensus 853 ~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 853 DVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 555555566655433345566665554
No 405
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.49 E-value=2.3e+02 Score=31.27 Aligned_cols=254 Identities=9% Similarity=-0.055 Sum_probs=105.7
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC
Q 009967 195 KLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD 274 (521)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (521)
.+...+.+++..+-...+..+.+.+..+ +...+..+... ++...-...+.++...+........+..+.+. ++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 3334444555555555555555554432 33333333321 33333333333443332211111222222221 24
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 009967 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354 (521)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 354 (521)
..+-...+.++...+.. ....+...+..+|...-...+.++...+..+. +..+.. .++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHh
Confidence 44444444444433211 11233344445555544555555554443321 111221 23444444444444444
Q ss_pred ccHHH-HHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967 355 GLVEK-GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433 (521)
Q Consensus 355 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (521)
+..+. +...+..+. .. +++..-...+.++...|..+.+...+......++...-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll-~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALT-GD---PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHh-cC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 43322 223333332 21 34555566666666666554443323222224554444445555555544 33444444
Q ss_pred HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 434 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
.+++ +| +..+-...+.++.+.+.-..+...+....
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4442 23 44555555555555432334555554443
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.29 E-value=20 Score=30.67 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 405 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 440 (521)
..|++..+..++.++...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 356666666666666777777777777777666666
No 407
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.16 E-value=45 Score=30.90 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-C---CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 382 CMVDLLSRSGRFKEAKEFLYDL-P---FDPGI--GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~~-~---~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
-=..-|.+..++..|...|.+- . ..|++ ..|+.-..+....|++..|+.-..+++..+|.+...|..-+.++..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 3345567778888888888762 2 14443 3566666667778999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHH
Q 009967 456 AGKWDNVSNIRRE 468 (521)
Q Consensus 456 ~g~~~~A~~~~~~ 468 (521)
..++++|....++
T Consensus 166 Le~~~~a~nw~ee 178 (390)
T KOG0551|consen 166 LERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHhh
Confidence 9998888877665
No 408
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.07 E-value=37 Score=34.00 Aligned_cols=83 Identities=13% Similarity=-0.052 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHhhC-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 009967 390 SGRFKEAKEFLYDL-PFDPGI--GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466 (521)
Q Consensus 390 ~g~~~~A~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 466 (521)
.|+...|...+... ...|.. ...-.|++.....|-...|-.++.+.+.+....|-++..+++++....+.+.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 46666666665542 222221 133344455555556666666666666666556666677777777777777777776
Q ss_pred HHHHhC
Q 009967 467 REMKEK 472 (521)
Q Consensus 467 ~~m~~~ 472 (521)
++..+.
T Consensus 700 ~~a~~~ 705 (886)
T KOG4507|consen 700 RQALKL 705 (886)
T ss_pred HHHHhc
Confidence 665443
No 409
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.83 E-value=57 Score=25.83 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHhhc---cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 338 RPNGVTLLGLLWACNHTG---LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 338 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (521)
.++..+--.+..++.+.. +..+...+++.+.+.............|.-++.|.|+++.+.++++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHH
Confidence 344444444445554443 34455666666653122112223344455566677777777776655
No 410
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.73 E-value=95 Score=30.33 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=21.7
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCchh--HHHHHHHHHcCCCHHHHHHHHhh
Q 009967 152 LYIKLSSIEEATRVFEDTHNPNVVS--YTTMICGLLKRERFEDALKLFQE 199 (521)
Q Consensus 152 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 199 (521)
..+..|+.+-+..+++.-..++... -.+.+...+..|+.+-+.-+++.
T Consensus 108 ~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 108 LATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 3345566665555555443322111 11233344455555555555443
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.11 E-value=39 Score=25.62 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRI 334 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 334 (521)
-|..++..|..+|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577788888888888888888887766
No 412
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.94 E-value=4.1e+02 Score=33.72 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=23.9
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRML 100 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 100 (521)
+...|......|-=--++++-. ...=+...-.|.+.|.+++|..+|++..
T Consensus 2460 l~elY~~L~E~Dm~~Glwrrr~---~~~eT~~a~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2460 LAELYRSLNEEDMFYGLWRRRA---KFPETMVALSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHHhhhHHHHHHHHHHHhh---ccHHHHHHHHHHHhhhHHHHhhHHHHHH
Confidence 5555555544443333333211 1122233444566666777776666654
No 413
>PRK12798 chemotaxis protein; Reviewed
Probab=62.71 E-value=1.5e+02 Score=28.63 Aligned_cols=195 Identities=14% Similarity=0.110 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 009967 276 FVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGY--AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA-CN 352 (521)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 352 (521)
.-..+.+-.....|++.....++..-..++.. +.++.+. .-.|+.+++.+.+..+.....++....+..|+.+ ..
T Consensus 82 rNv~Aa~iy~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~ 159 (421)
T PRK12798 82 RNVDAALIYLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLM 159 (421)
T ss_pred cchhHHHhhHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHh
Confidence 33344555555678888887777776654332 2233322 2368999999999998877777777788888876 55
Q ss_pred hhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHH----HhhCCCCCCHHH-HHHHHHHHHhcCCHH
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEF----LYDLPFDPGIGF-WKALLGGCQIHSNVE 426 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~-~~~l~~~~~~~g~~~ 426 (521)
...+...|..+|+..+-..+... .......-+......|+.+++..+ +++....|=... +..+..+..+.++-.
T Consensus 160 ~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~ 239 (421)
T PRK12798 160 VATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI 239 (421)
T ss_pred cccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc
Confidence 66789999999999874443221 112344556667788998887655 444443443333 333344444544333
Q ss_pred HHHHHHHHHHh-cCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 427 LGEFAARRILA-LDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 427 ~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
.-.. +..++. ++|+ ...+|..+++.-.-.|+.+-|...-++.....
T Consensus 240 ~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 240 RDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred cHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 3333 444444 5555 45689999999999999999998888876654
No 414
>PRK10941 hypothetical protein; Provisional
Probab=62.48 E-value=1.1e+02 Score=27.88 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (521)
..+.+-.+|.+.++++.|+++.+.+... .|+.. -+.--.-.|.+.|.+..|..=++...+.++-.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455556677777777777777777763 34433 34444445677777777777777776666666666555555544
Q ss_pred HH
Q 009967 387 LS 388 (521)
Q Consensus 387 ~~ 388 (521)
+.
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 415
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.23 E-value=1.6e+02 Score=28.70 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (521)
...|+.-|...|+..+|.+..+++ .-++-....++.+++.+.-+.|+-...+.+++.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeL--gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~ 568 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKEL--GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKE 568 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHh--CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345666677777777777777665 233333445666777777776665555555544
No 416
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.80 E-value=53 Score=26.34 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=41.1
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 394 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
+.|.++.+-|. ........+......|++..|.++.+.++..+|+|..+-...+.+|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 44555555553 222223334456778999999999999999999999888888888776654
No 417
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.39 E-value=51 Score=31.81 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967 381 ACMVDLLSRSGRFKEAKEFLYDLPFDP----------GIGFWKALLGGCQIHSNVELGEFAARRIL 436 (521)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (521)
-.|++..+-.|++..|+++++.+.... .+.++-.+.-+|...+++.+|++.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777664211 11233334444455555555555555443
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.22 E-value=50 Score=25.70 Aligned_cols=43 Identities=7% Similarity=0.121 Sum_probs=22.8
Q ss_pred HHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHH
Q 009967 94 YLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK 136 (521)
Q Consensus 94 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 136 (521)
+.++.+...++.|++......+++|.+.+|+..|.++|+-++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555443
No 419
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=61.18 E-value=2.1e+02 Score=29.80 Aligned_cols=55 Identities=9% Similarity=0.042 Sum_probs=33.9
Q ss_pred hhhhcccCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCC-------hHHHHHHHHHhHHC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP---DLNVVSATTIIGRFAKQHH-------YEEAIYLFSRMLLL 102 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~ 102 (521)
+|-.|.|+|++++|.++..... +.....+...+..|..+.+ -++...-|+...+.
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 8999999999999999993322 2333456666777766422 22444555555443
No 420
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.90 E-value=87 Score=25.25 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=64.7
Q ss_pred HhhcCCCchh--------hhhhcccCCChhHHHHHhccCCC---------CCcccHHHHHHHHHhcCC-hHHHHHHHHHh
Q 009967 38 KLETPAIRTD--------SVSCGSESDKFSSVHQVFDEVPD---------LNVVSATTIIGRFAKQHH-YEEAIYLFSRM 99 (521)
Q Consensus 38 ~~~~g~~~~~--------l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m 99 (521)
+.+++ +.++ ++...+..+++...+++++.+.. .+..+|..++.+.++... --.+..+|..|
T Consensus 28 ~~~~~-~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 28 MQEEN-ASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred hhhcc-cChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 44555 6666 66666777888888888877642 356789999999977665 45678899999
Q ss_pred HHCCCCCChhhHHHHHHHHcCCC
Q 009967 100 LLLNIRPSEFTFGSVIPSSTALE 122 (521)
Q Consensus 100 ~~~~~~p~~~~~~~ll~~~~~~~ 122 (521)
.+.+.+++..-|..++.++.+..
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCC
Confidence 98888999999999999977653
No 421
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.58 E-value=71 Score=24.11 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009967 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335 (521)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 335 (521)
.++|..+.+.+...+.. ...+--+-+..+.+.|++++|...=.....||...|.+|-. .+.|-.+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34555555555544431 22222223445667788888844333334477776666533 5667777777777777665
Q ss_pred C
Q 009967 336 G 336 (521)
Q Consensus 336 ~ 336 (521)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.54 E-value=11 Score=29.61 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=24.6
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHH
Q 009967 82 RFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS 118 (521)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 118 (521)
.+-..|.-..|..+|++|.+.|-+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 344556677888888999888877765 55666543
No 423
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.53 E-value=60 Score=28.31 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcC--CC----CchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 427 LGEFAARRILALD--PE----DVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 427 ~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
.|.+.|+++.+.. |. ...+...++....+.|++++|.+.|.++...+-
T Consensus 143 ~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 143 KALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 4555555555532 22 345677788889999999999999999876653
No 424
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.39 E-value=21 Score=31.03 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
...+|.+.|.+++.+++++-|+....|..++....++|+++.|.+.|++..+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34566777777777777777777777777777777777777777777766543
No 425
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.87 E-value=20 Score=34.84 Aligned_cols=102 Identities=14% Similarity=0.046 Sum_probs=68.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhhccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhc
Q 009967 313 ICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL-LWACNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRS 390 (521)
Q Consensus 313 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 390 (521)
+..+...+.++.|..++.+..+ +.||...|-.. ..++.+.+++..|..=+.++.+.. |+ ...|-.=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhhheeeeccHHHHhH
Confidence 4456677889999999999988 45876654433 356788899988888777766343 33 22333334455566
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHHHHH
Q 009967 391 GRFKEAKEFLYDLP-FDPGIGFWKALLGGC 419 (521)
Q Consensus 391 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 419 (521)
+.+.+|...|+... +.|+.......+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 77788888887753 477777666666554
No 426
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=58.08 E-value=35 Score=19.77 Aligned_cols=18 Identities=6% Similarity=-0.158 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 009967 414 ALLGGCQIHSNVELGEFA 431 (521)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~ 431 (521)
.+...+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444555555555555
No 427
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.50 E-value=38 Score=28.92 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
|++.+|..++.++...|+.++|.+..+++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56666666666666666666666665554
No 428
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.45 E-value=15 Score=33.87 Aligned_cols=57 Identities=9% Similarity=0.102 Sum_probs=27.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
++.+.++...|++-+..+++++|+...-|-.-..+....|+|++|...+....+.++
T Consensus 157 v~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 157 VFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred eeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 344444444444444444455444444444444444444455554444444444443
No 429
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.32 E-value=1.8e+02 Score=26.72 Aligned_cols=78 Identities=8% Similarity=-0.113 Sum_probs=41.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC-------------
Q 009967 395 EAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG------------- 457 (521)
Q Consensus 395 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 457 (521)
.|...+.+....-+......+...|.. ..|.++|...|.++.+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555543322233333334333322 2367777777777777665 44444444 444444
Q ss_pred --ChHHHHHHHHHHHhCCCc
Q 009967 458 --KWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 458 --~~~~A~~~~~~m~~~g~~ 475 (521)
+...|...+......|..
T Consensus 250 ~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 250 EEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCh
Confidence 666677777776665543
No 430
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=54.25 E-value=1.4e+02 Score=25.44 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CC----CchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 413 KALLGGCQIHSNVELGEFAARRILALD-----------PE----DVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 413 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
-+++..|.+.-++.++.++++.+.++. |. .-...+..+..+.+.|..|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345666777778888888888887632 22 234678889999999999999999984
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.56 E-value=86 Score=22.91 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=12.2
Q ss_pred HHHHhhccHHHHHHHHHHch
Q 009967 349 WACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~ 368 (521)
......|++++|...+++..
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33455666666666666654
No 432
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=52.51 E-value=44 Score=24.09 Aligned_cols=62 Identities=6% Similarity=0.003 Sum_probs=44.3
Q ss_pred hHHHHHHHhhcCCCchh-hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHH
Q 009967 31 TQKASVQKLETPAIRTD-SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA 92 (521)
Q Consensus 31 ~~~~~~~~~~~g~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 92 (521)
...+.+.+...|.++.+ .=..-++..+.++|.++++.++..+..+|..+..++-..|...-|
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 45578888888867776 222333556688888888888888888888888887766654444
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.26 E-value=2.3e+02 Score=27.37 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009967 277 VGNSLISFYAKCGSMEDSLLVFDKLTE------RNIVTWNAVICGYAQNGRGEEAIEFFERMRI 334 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 334 (521)
.+.-+.+.|..+|+++.|.+.|.+..+ ..+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345566677777777777777777553 2223455555555556666666655555443
No 434
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.21 E-value=87 Score=22.60 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=16.9
Q ss_pred cCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCH
Q 009967 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERF 190 (521)
Q Consensus 155 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 190 (521)
..|+.+.|.+++..+. ..+..|..++.++-..|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 3345555555555554 4444444445444444443
No 435
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.08 E-value=2e+02 Score=26.76 Aligned_cols=111 Identities=14% Similarity=-0.005 Sum_probs=67.7
Q ss_pred HHHHHHHHHHchHhCCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967 357 VEKGYSYFSQAKLEDPG---MLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAAR 433 (521)
Q Consensus 357 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (521)
.+.|.+.|+........ ..++.....+.....+.|..+....+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888887643222 456666677777777888877766666666546677778888888888889988889999
Q ss_pred HHHhcC-CCCchHHHHHHHHHHhcCCh--HHHHHHHHH
Q 009967 434 RILALD-PEDVSSYVMLSNALSVAGKW--DNVSNIRRE 468 (521)
Q Consensus 434 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 468 (521)
.+...+ -....... ++..+...+.. +.+...+++
T Consensus 226 ~~l~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRY-VLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHCTSTS-TTTHHH-HHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHcCCcccccHHHHH-HHHHHhcCChhhHHHHHHHHHH
Confidence 888843 22333333 33344423333 666666553
No 436
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.18 E-value=59 Score=20.29 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=16.3
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCChhhHHHHH
Q 009967 84 AKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVI 115 (521)
Q Consensus 84 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 115 (521)
.+.|-..++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555554444444
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.95 E-value=34 Score=31.27 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 348 (521)
-|+..|..-.+.||+++|+.++++.++.|+.--..+|..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999988765555654433
No 438
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.94 E-value=3.5e+02 Score=29.13 Aligned_cols=218 Identities=17% Similarity=0.065 Sum_probs=116.0
Q ss_pred HHcCCCHHHHHHHHhhCCC----CCh-------hHHHHHH-HHHHhcCChHHHHHHHHHHHHC----CCCCChhhHHHHH
Q 009967 184 LLKRERFEDALKLFQEMPH----RNV-------VSWNAMI-GGYSQTGRNEEAVNLFIEMLRE----GLVPNHSTLPCAI 247 (521)
Q Consensus 184 ~~~~g~~~~a~~~~~~~~~----~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll 247 (521)
.....++.+|..+..++.. ++. ..|+.+- ......|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456788888877776542 211 2455543 3345678889999888877653 1223344555666
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH-----HHHHhcCC--HHHHHHHHhhcCC-----CC-----hhHHH
Q 009967 248 IAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI-----SFYAKCGS--MEDSLLVFDKLTE-----RN-----IVTWN 310 (521)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~--~~~A~~~~~~~~~-----~~-----~~~~~ 310 (521)
.+..-.|++++|..+..+..+.....++..+..+. ..+...|+ +.+....|..... .. ..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77778899999999888887765444544443332 23455663 2333333333321 11 22344
Q ss_pred HHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhhccHHHHHHHHHHchHhCCCCC--Chh--HHHHH
Q 009967 311 AVICGYAQN-GRGEEAIEFFERMRINGIRPNGVT--LLGLLWACNHTGLVEKGYSYFSQAKLEDPGML--KPE--HYACM 383 (521)
Q Consensus 311 ~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~--~~~~l 383 (521)
.+..++.+. +...++..-++--......|-... +..++......|+.++|...+.++. .....+ .+. .-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~-~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE-RLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhcCCCCCchHHHHHHH
Confidence 444444441 112222222222222222222222 2356677788899999988888874 222222 211 11122
Q ss_pred HH--HHHhcCCHHHHHHHHhh
Q 009967 384 VD--LLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 384 ~~--~~~~~g~~~~A~~~~~~ 402 (521)
+. .-...|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23457888877777665
No 439
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=50.56 E-value=72 Score=29.20 Aligned_cols=20 Identities=10% Similarity=0.438 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHhcCChHHHH
Q 009967 206 VSWNAMIGGYSQTGRNEEAV 225 (521)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~a~ 225 (521)
..|..|+.+++..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35667777777777766443
No 440
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.96 E-value=2.7e+02 Score=28.70 Aligned_cols=84 Identities=8% Similarity=0.004 Sum_probs=61.6
Q ss_pred hcCCHHHHHHHHhh-CCCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChH
Q 009967 389 RSGRFKEAKEFLYD-LPFDP-G------IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWD 460 (521)
Q Consensus 389 ~~g~~~~A~~~~~~-~~~~~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 460 (521)
+..++..+.+.|.. |..-| | ......+.-+|......+.|.++++++-+.+|.++-.-.....+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 55667777777654 33211 1 2245556666777888999999999999999888888888888888889999
Q ss_pred HHHHHHHHHHhC
Q 009967 461 NVSNIRREMKEK 472 (521)
Q Consensus 461 ~A~~~~~~m~~~ 472 (521)
+|+.++......
T Consensus 446 ~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 446 EALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHhh
Confidence 998888776543
No 441
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.93 E-value=1.1e+02 Score=23.17 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967 207 SWNAMIGGYSQTGRNEEAVNLFIEMLR 233 (521)
Q Consensus 207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 233 (521)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378888888888888999888888876
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.57 E-value=2.2e+02 Score=27.55 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=36.8
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCChh--hHHHHHHHH--cCCCChHHHHHHHHHHHHh
Q 009967 82 RFAKQHHYEEAIYLFSRMLLLNIRPSEF--TFGSVIPSS--TALEDLNLGKQLHAWATKV 137 (521)
Q Consensus 82 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~--~~~~~~~~a~~~~~~~~~~ 137 (521)
.+.+.+++..|.++|+.+.+. ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778888888888888876 555554 344444443 3566777888888876654
No 443
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.47 E-value=1.9e+02 Score=25.70 Aligned_cols=162 Identities=10% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc
Q 009967 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN-HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390 (521)
Q Consensus 312 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (521)
++...-+.|+++++...++++...+...+..--+.+-.+|- ..|..-.+++++..+........+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 45566677888888888888877665555554444444442 233444455555554322221111 2222333333211
Q ss_pred ------CCHHHHHHHHhhCCC----CCCHHHHHHHHHH-H----Hh--cC-----CHHHHHHHHHHHHh-----cCCCCc
Q 009967 391 ------GRFKEAKEFLYDLPF----DPGIGFWKALLGG-C----QI--HS-----NVELGEFAARRILA-----LDPEDV 443 (521)
Q Consensus 391 ------g~~~~A~~~~~~~~~----~~~~~~~~~l~~~-~----~~--~g-----~~~~A~~~~~~~~~-----~~p~~~ 443 (521)
.--.+.+.+++..-. .+...+|-.-+.+ | +. .| -.+.|.+.|+++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 112344445544221 1122222222211 1 11 11 23567777777765 456666
Q ss_pred hHHH----HHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 444 SSYV----MLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 444 ~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
.-+. .-+-.|--.|+.++|.++.++..+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5332 223334568999999999888766554
No 444
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.33 E-value=1.3e+02 Score=23.63 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=32.6
Q ss_pred HHHHHHHHHh--cCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 428 GEFAARRILA--LDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 428 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
..++|..+.+ ++...+..|...+..+...|++.+|.++|+.
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5667777766 4555778888999999999999999998864
No 445
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.80 E-value=2.3e+02 Score=26.52 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH------hhccHHHHHHHHHHchHhCCCCCChh-HHHHHHHHHHhcCCH
Q 009967 321 RGEEAIEFFERMRINGIRPNGVTLLGLLWACN------HTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRF 393 (521)
Q Consensus 321 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 393 (521)
-++++..++++....+. |..+.....|.++- ..-+|.....+|+.+. .-. |++. +.|.-+ +.....-.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~-~~a--pSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE-QAA--PSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH-HhC--CCCeEeehHHH-HHHHhhhH
Confidence 36788899999888774 88888877777653 2346777788888775 322 4544 334322 23333446
Q ss_pred HHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967 394 KEAKEFLYDLPFDPGIG----FWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444 (521)
Q Consensus 394 ~~A~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 444 (521)
+.++..++.+...|... .+..-...+.+.|..++|...|++++.+.++...
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 66777777665443322 2333344588899999999999999998875443
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.61 E-value=33 Score=31.30 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhH
Q 009967 76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTF 111 (521)
Q Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 111 (521)
|+.-|..-.+.||+++|++++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 555666666666666666666666666654433333
No 447
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=48.01 E-value=22 Score=32.35 Aligned_cols=82 Identities=10% Similarity=0.120 Sum_probs=59.6
Q ss_pred CCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967 371 DPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKA-LLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447 (521)
Q Consensus 371 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 447 (521)
....-|+..|...+....+.|.+.+...++.+. ...| |+..|-. -..-+...++++.+..+|.+.++.+|++|..|.
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 334457777877777777778888888887764 3344 4445543 222367789999999999999999999999988
Q ss_pred HHHHH
Q 009967 448 MLSNA 452 (521)
Q Consensus 448 ~l~~~ 452 (521)
...+.
T Consensus 181 eyfr~ 185 (435)
T COG5191 181 EYFRM 185 (435)
T ss_pred HHHHH
Confidence 77655
No 448
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.94 E-value=1.1e+02 Score=28.64 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILALD 439 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 439 (521)
.|..++......|.++..+.+|++++..+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~ag 170 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAG 170 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Confidence 45555555555555555555665555544
No 449
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.10 E-value=2.3e+02 Score=26.24 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHH----------cCCCHHHHHHHHh
Q 009967 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLL----------KRERFEDALKLFQ 198 (521)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~a~~~~~ 198 (521)
++++.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+...... +..++..|+ -.|++....++++
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 44455555555555555444444444444555555555555431111 333333332 2466666666666
Q ss_pred hCCCCChhHHHHHHHH
Q 009967 199 EMPHRNVVSWNAMIGG 214 (521)
Q Consensus 199 ~~~~~~~~~~~~l~~~ 214 (521)
.-..-|....-+++..
T Consensus 343 ~yp~tdi~~~l~~A~~ 358 (370)
T KOG4567|consen 343 NYPTTDISKMLAVADS 358 (370)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 6555555444444433
No 450
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=46.46 E-value=1.9e+02 Score=24.84 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRIN 335 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~ 335 (521)
..+.++..+...|+++.|.+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3455666666666666666666666553
No 451
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=46.12 E-value=3e+02 Score=26.97 Aligned_cols=43 Identities=7% Similarity=-0.148 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHH
Q 009967 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGL 184 (521)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 184 (521)
+..+....+.++...++......+..-+..++.......+.++
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al 141 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAAL 141 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3334444555555554444444433333333333333333333
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.67 E-value=55 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 446 YVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
...++.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455666677777777777666654
No 453
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=45.08 E-value=2.2e+02 Score=25.15 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 009967 421 IHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~p~ 441 (521)
..++...|..+++++.+++|+
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC
Confidence 446788999999999999984
No 454
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.96 E-value=1.3e+02 Score=24.33 Aligned_cols=63 Identities=11% Similarity=-0.023 Sum_probs=41.9
Q ss_pred HHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC
Q 009967 95 LFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 158 (521)
Q Consensus 95 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 158 (521)
+.+.+.+.|++++..- ..++..+...++.-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4455556676655443 34556666667778888999988887766666665556677777664
No 455
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.11 E-value=3.1e+02 Score=26.54 Aligned_cols=122 Identities=12% Similarity=-0.015 Sum_probs=69.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHH--------HHHHHHHhhccHHHHHHHHHHchHhCCCCCCh----hHHHHHHHH
Q 009967 319 NGRGEEAIEFFERMRINGIRPNGVTLL--------GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP----EHYACMVDL 386 (521)
Q Consensus 319 ~~~~~~A~~~~~~m~~~~~~p~~~~~~--------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~ 386 (521)
+.++.+|..+-+.....-..-|..|+. .+-.++...|+...-..++........+..+. ...|.|++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 466777776666544322222333332 23333455666666666555544333333232 346677788
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHH---H----HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 387 LSRSGRFKEAKEFLYDLPFDPGIGF---W----KALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 387 ~~~~g~~~~A~~~~~~~~~~~~~~~---~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
|...+.++.|..+..+.. .|+..+ | --+....+.++++..|.+.|-.++...|.
T Consensus 219 yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 888888888888888766 333221 1 11222345667888888888888877774
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.67 E-value=1.8e+02 Score=25.96 Aligned_cols=55 Identities=5% Similarity=-0.119 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 415 LLGGCQIHSNVELGEFAARRILALDPE------DVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
++..|...|++++|.++|+.+...... ...+...+..++.+.|+.++.+.+.=+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444466666666666666666442211 3345556677777777777776665444
No 457
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=43.57 E-value=64 Score=29.58 Aligned_cols=79 Identities=8% Similarity=0.041 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCC-CHHHHHHH
Q 009967 338 RPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD-LPFDP-GIGFWKAL 415 (521)
Q Consensus 338 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l 415 (521)
..|...|...+....+.|.+.+.-.++.++...+|...+.-++. -..-|...++++.+..+|.. +...| ++..|...
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~-c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYC-CAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeee-ccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34566777777767778888899999999887777544443332 22335567889999999887 33334 34455554
Q ss_pred HH
Q 009967 416 LG 417 (521)
Q Consensus 416 ~~ 417 (521)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 458
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.49 E-value=3.2e+02 Score=26.60 Aligned_cols=181 Identities=8% Similarity=0.011 Sum_probs=92.6
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNV---VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
.++..++.|+.+-+.-+++....++. ... ..+...+..|+.+.+..+++.-....-..+....+ .+...+..|+.
T Consensus 38 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~ 115 (413)
T PHA02875 38 PIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL 115 (413)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH
Confidence 66777788888887777766544432 222 33555667788877665554321110011111112 22233344554
Q ss_pred HHHHHHHHHHHHhCCCCcHHH--HHHHHHHHHcCCCHHHHHHHhhcCCCC---CchhHHHHHHHHHcCCCHHHHHHHHhh
Q 009967 125 NLGKQLHAWATKVGLQSNVFV--GSAILDLYIKLSSIEEATRVFEDTHNP---NVVSYTTMICGLLKRERFEDALKLFQE 199 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (521)
++.+.+.+.|..|+... -.+.+...+..|+.+-+..+++.-... +..-+ +.+...+..|+.+-+.-+++.
T Consensus 116 ----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ 190 (413)
T PHA02875 116 ----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDS 190 (413)
T ss_pred ----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhC
Confidence 44555566676554321 123445556788888888777765442 22222 233344556777766666665
Q ss_pred CCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 009967 200 MPHRNVV---SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN 239 (521)
Q Consensus 200 ~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (521)
-..++.. ...+.+...+..|+.+ +.+.+.+.|..++
T Consensus 191 ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 191 GANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 4443221 1123344344555554 3444555665554
No 459
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.46 E-value=2.8e+02 Score=25.99 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=75.9
Q ss_pred CChhHHHHHHHHHHHcC------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhC
Q 009967 304 RNIVTWNAVICGYAQNG------------RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371 (521)
Q Consensus 304 ~~~~~~~~li~~~~~~~------------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 371 (521)
.|+.+|-.++..--..- -.+.-+.+++++.+.+ +-+..-...++..+.+..+.+...+-++++....
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 35677777775432221 1345567777777763 2344456667777777777788788888876554
Q ss_pred CCCCChhHHHHHHHHHHh---cCCHHHHHHHHhhC-------CCC--------CC-----HHHHHHHHHHHHhcCCHHHH
Q 009967 372 PGMLKPEHYACMVDLLSR---SGRFKEAKEFLYDL-------PFD--------PG-----IGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~-------~~~--------~~-----~~~~~~l~~~~~~~g~~~~A 428 (521)
+ -+...|...++.... .-.++....+|.+. ... ++ ...+..+...+...|-.+.|
T Consensus 96 ~--~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 96 P--GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C--CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 3 245566666665443 22355555555431 111 11 11223333335667888888
Q ss_pred HHHHHHHHhcC
Q 009967 429 EFAARRILALD 439 (521)
Q Consensus 429 ~~~~~~~~~~~ 439 (521)
..+++-+++.+
T Consensus 174 va~~Qa~lE~n 184 (321)
T PF08424_consen 174 VALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHH
Confidence 88888877754
No 460
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.37 E-value=1.7e+02 Score=22.97 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 009967 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLY 401 (521)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 401 (521)
.+.++|+.|..+.-..-....|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555554222222233345555555555555555555543
No 461
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.36 E-value=43 Score=22.28 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=14.8
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 009967 141 SNVFVGSAILDLYIKLSSIEEATRVFEDT 169 (521)
Q Consensus 141 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 169 (521)
.|..-.-.++.+|...|++++|.++++++
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33334444555566666666666555444
No 462
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.31 E-value=1.3e+02 Score=25.45 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=9.4
Q ss_pred HHhhccHHHHHHHHHHch
Q 009967 351 CNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~ 368 (521)
|.+.|.+++|.+++++..
T Consensus 121 Cm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 121 CMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHhcCchHHHHHHHHHHh
Confidence 455555555555555543
No 463
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.13 E-value=3.2e+02 Score=26.20 Aligned_cols=124 Identities=10% Similarity=-0.011 Sum_probs=64.9
Q ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHH-HHHHHHcC-CCHHHHHHHHhhCCCCChhHHHHH---HHH
Q 009967 140 QSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTT-MICGLLKR-ERFEDALKLFQEMPHRNVVSWNAM---IGG 214 (521)
Q Consensus 140 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~l---~~~ 214 (521)
+-.+.++-.+...+...|+.+.|.+++++..- ++.. +...+... .+......-++--...|...|.++ +..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf----~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALF----AFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 45566777777788888888887777766531 0000 00000000 000000000000001244555554 556
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hhcchHHHHHHHHHHH
Q 009967 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA-NIAALGMGKSFHACAV 267 (521)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 267 (521)
+.+.|-+..|+++.+-+..-+..-|+.....+|..++ +.++++-..++.+...
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 7788888999988888888664445666666666664 3445554555555443
No 464
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.92 E-value=90 Score=28.14 Aligned_cols=56 Identities=20% Similarity=0.086 Sum_probs=46.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.++...++++.|....++.+..+|.++.-+..-+.+|.+.|.+.-|+.-+....+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34777888999999999999999988888888888899999888888888775544
No 465
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=41.46 E-value=3.3e+02 Score=26.17 Aligned_cols=93 Identities=9% Similarity=-0.009 Sum_probs=42.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH--CCCCCCHHHHH---HHHHHHHhhccHHHHHHHHHHchHhCCCCCChh-----HH
Q 009967 311 AVICGYAQNGRGEEAIEFFERMRI--NGIRPNGVTLL---GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE-----HY 380 (521)
Q Consensus 311 ~li~~~~~~~~~~~A~~~~~~m~~--~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~ 380 (521)
.+...+-..|+.++|..++.+..- .|..--..-.. --++.|...+|+-.|.-+-+++..+.=-.|+.. .|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 344455556666666666554321 11000000111 112345555666666555555543332233322 35
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC
Q 009967 381 ACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
+.+++.....+.+=.+.+.++.+
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHH
Confidence 55555555555555555555553
No 466
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.33 E-value=1.8e+02 Score=28.25 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 178 TTMICGLLKRERFEDALKLFQEMPH-----------RNVVSWNAMIGGYSQTGRNEEAVNLFIEML 232 (521)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 232 (521)
..|++.++-.||+..|+++++.+.- -.+.+|-.+.-+|...+++.+|.+.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665531 234556666677777777777777776654
No 467
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.56 E-value=2.5e+02 Score=24.61 Aligned_cols=91 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRP-----NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACM 383 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 383 (521)
+|.|+--|.-...+.+|-+.|. .+.|+.| +...=..-|......|+.+.|.+....+. ..-+..|...+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~-PeiLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN-PEILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC-hHHHccchhHHHHH
Q ss_pred HHH----HHhcCCHHHHHHHHhh
Q 009967 384 VDL----LSRSGRFKEAKEFLYD 402 (521)
Q Consensus 384 ~~~----~~~~g~~~~A~~~~~~ 402 (521)
... +.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 468
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.51 E-value=33 Score=27.00 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=20.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh
Q 009967 216 SQTGRNEEAVNLFIEMLREGLVPNH 240 (521)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (521)
.+.|.-..|-.+|+.|+.+|-+||.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc
Confidence 3456677889999999999988873
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=40.41 E-value=59 Score=28.43 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 389 RSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 389 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
+.|+.+.|.+++.+.. .-| ....|..+....-+.|+++.|.+.+++.++++|+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 4455555555555422 222 2335555555555556666666666666555554
No 470
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.14 E-value=89 Score=22.41 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=11.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 009967 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQT 218 (521)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (521)
.+++.++++.++.....+|.....++...
T Consensus 46 ~~q~~~LLd~L~~RG~~AF~~F~~aL~~~ 74 (84)
T cd08326 46 RDQARQLLIDLETRGKQAFPAFLSALRET 74 (84)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 33344444444444444444444444333
No 471
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=39.94 E-value=2.3e+02 Score=23.96 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=15.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967 418 GCQIHSNVELGEFAARRILALDPEDVSS 445 (521)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 445 (521)
.|.+.|.+++|.+++++..+ +|++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 35666666666666666655 4444333
No 472
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.31 E-value=3.3e+02 Score=25.50 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHH
Q 009967 344 LLGLLWACNHTGLVEKGYSYFSQ 366 (521)
Q Consensus 344 ~~~ll~~~~~~~~~~~a~~~~~~ 366 (521)
+......|++.|+.+.|.+.+.+
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33334445555555555544443
No 473
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=39.19 E-value=1e+02 Score=21.29 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=10.3
Q ss_pred CChHHHHHHHHHHHhC
Q 009967 457 GKWDNVSNIRREMKEK 472 (521)
Q Consensus 457 g~~~~A~~~~~~m~~~ 472 (521)
|....|..-|++|...
T Consensus 59 G~L~~aL~ey~~~~g~ 74 (82)
T PF11123_consen 59 GELAAALEEYKKMVGA 74 (82)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4556677777776644
No 474
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=38.77 E-value=25 Score=27.08 Aligned_cols=27 Identities=52% Similarity=1.053 Sum_probs=20.7
Q ss_pred cceEEEECCEEEEEecCCCCCCCcHHHHHHH
Q 009967 479 GCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509 (521)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 509 (521)
+++|+.+ +.|.+|+.+||...-+.+.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~ 28 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMK 28 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHH
Confidence 5678876 89999999999885444433
No 475
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.54 E-value=3.1e+02 Score=25.29 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=27.3
Q ss_pred HHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967 182 CGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233 (521)
Q Consensus 182 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 233 (521)
....+.++..+..+.+..+. ....-...+......|++..|++++.+..+
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444442 333344455666677777777777766654
No 476
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=38.45 E-value=2.7e+02 Score=24.30 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHhh
Q 009967 383 MVDLLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~ 402 (521)
+.....+.|+.++|.+.|.+
T Consensus 171 igeL~rrlg~~~eA~~~fs~ 190 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSR 190 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 33444455555555555544
No 477
>PRK09857 putative transposase; Provisional
Probab=38.34 E-value=2.1e+02 Score=26.38 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 009967 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477 (521)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 477 (521)
.++.-....++.++-.++++.+.+..|.......+++.-+.+.|.-++++++.++|...|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3443334567777777777777776676666777888888888888889999999999988653
No 478
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.87 E-value=1e+02 Score=19.21 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009967 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348 (521)
Q Consensus 317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 348 (521)
.+.|-.+++...+++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555566666666666666666655555544
No 479
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.71 E-value=4e+02 Score=26.09 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 331 (521)
+..+-...+.++...+..+..-.+..-....|..+-..-+.+....|. ..|...+..
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 333444444444444443322222222333444444444555555555 444444444
No 480
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=37.12 E-value=3e+02 Score=24.49 Aligned_cols=82 Identities=11% Similarity=-0.025 Sum_probs=39.2
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChh-HHHHHHHHHHhcCCHHHHHHHHhh-CCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPE-HYACMVDLLSRSGRFKEAKEFLYD-LPFDPGIG-FWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 429 (521)
....++.|...|.+.+... |++. -|..=+.++.+..+++.+..--.+ +.+.||.. ....+.........+++|+
T Consensus 22 ~~k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 3344555555555544222 4432 334445555555565555443332 33344433 2223333445556666666
Q ss_pred HHHHHHHh
Q 009967 430 FAARRILA 437 (521)
Q Consensus 430 ~~~~~~~~ 437 (521)
..+.++..
T Consensus 99 ~~Lqra~s 106 (284)
T KOG4642|consen 99 KVLQRAYS 106 (284)
T ss_pred HHHHHHHH
Confidence 66666644
No 481
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=36.75 E-value=2.1e+02 Score=22.49 Aligned_cols=111 Identities=8% Similarity=0.005 Sum_probs=71.2
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHc----C-------CCCh
Q 009967 56 DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSST----A-------LEDL 124 (521)
Q Consensus 56 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~-------~~~~ 124 (521)
.++.-|.+++.++...+ .....++.+....-.-.+.++..++....-.|. ...+..+.-|. . .+..
T Consensus 3 nNp~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~-efl~~yI~~cI~~ce~~kd~~~q~R~V 79 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQ-EFLHMYISNCIKSCESIKDKYMQNRLV 79 (126)
T ss_pred CcHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcH-HHHHHHHHHHHHHHHhhcccccccchh
Confidence 45666777776655433 367778888888777888888888877653343 33333443332 1 1223
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 009967 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDT 169 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 169 (521)
.-.-.+++.+.+.++......+..+-..|.+..++.+|-.+|+-+
T Consensus 80 Rlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 80 RLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 344556666777776666667777777777888888888888654
No 482
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.72 E-value=3e+02 Score=25.42 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 009967 406 DPGIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~~~~A 428 (521)
.-|+..|..+..+|...|+.+.+
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHH
Confidence 45555566666666555554443
No 483
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.62 E-value=1.4e+02 Score=24.18 Aligned_cols=47 Identities=9% Similarity=-0.104 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC
Q 009967 76 ATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122 (521)
Q Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 122 (521)
-..++..+.+.+++-.|.++++++.+.+...+..|.-..+..+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34667777777777888888888887765555555555555555444
No 484
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.00 E-value=85 Score=23.93 Aligned_cols=44 Identities=11% Similarity=-0.052 Sum_probs=21.4
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC
Q 009967 79 IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122 (521)
Q Consensus 79 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 122 (521)
++..+...+.+-.|.++++.+.+.+..++..|.-..+..+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444444555555555555544444444444444444444
No 485
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.60 E-value=4.2e+02 Score=25.71 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=34.3
Q ss_pred CChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc
Q 009967 203 RNVVSWNAMIGGYSQ---TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254 (521)
Q Consensus 203 ~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 254 (521)
++-..+..+++++.+ -.+++.|+-++-.|.+.|-.|....-..++-++-..|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 455666677777765 4788999999999999886665444444444443333
No 486
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.35 E-value=1.2e+02 Score=27.06 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=7.9
Q ss_pred HHhhccHHHHHHHHHHc
Q 009967 351 CNHTGLVEKGYSYFSQA 367 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~ 367 (521)
|...|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 44444444444444444
No 487
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.13 E-value=3.4e+02 Score=24.54 Aligned_cols=87 Identities=9% Similarity=0.098 Sum_probs=55.8
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 393 FKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVE-LGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 393 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
..+-++.++++. .+.+-..|+.--......|+.. .-+++.+.++..+..+..+|..--+++...+.++.-+.+..+|
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444432 1233444444333344445555 6667777777777778888888888888888888888888888
Q ss_pred HhCCCccCCc
Q 009967 470 KEKGMTRVPG 479 (521)
Q Consensus 470 ~~~g~~~~~~ 479 (521)
.+..++..+.
T Consensus 174 le~Di~NNSA 183 (318)
T KOG0530|consen 174 LEEDIRNNSA 183 (318)
T ss_pred HHHhhhccch
Confidence 8877777665
No 488
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.12 E-value=5.1e+02 Score=26.47 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHhH--------------------HCCCCCChhhHHHHHHH---HcCCCChHHHH
Q 009967 72 NVVSATTIIGRFAKQHHYEEAIYLFSRML--------------------LLNIRPSEFTFGSVIPS---STALEDLNLGK 128 (521)
Q Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--------------------~~~~~p~~~~~~~ll~~---~~~~~~~~~a~ 128 (521)
.+.+.-.+...+-.+|+.+-|.++.++.. ....+-|...|.++.+. +.+.|.+..|.
T Consensus 283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHH
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHH-cCCCHHHHHHHhhcCCC-------CCchhHHHHHHHHHcCCC---HHHHHHHH
Q 009967 129 QLHAWATKVGLQSNVFVGSAILDLYI-KLSSIEEATRVFEDTHN-------PNVVSYTTMICGLLKRER---FEDALKLF 197 (521)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~---~~~a~~~~ 197 (521)
++-..+.+....-|+.....+|+.|+ +..++.--+++++.... ||-.--.++...|.+... -+.|...+
T Consensus 363 E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l 442 (665)
T KOG2422|consen 363 EWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNAL 442 (665)
T ss_pred HHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHH
Q ss_pred hhCCCCChhHHHHHHHHH
Q 009967 198 QEMPHRNVVSWNAMIGGY 215 (521)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~ 215 (521)
.+....-+.+.+-|+..+
T Consensus 443 ~qAl~~~P~vl~eLld~~ 460 (665)
T KOG2422|consen 443 LQALKHHPLVLSELLDEL 460 (665)
T ss_pred HHHHHhCcHHHHHHHHhc
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.88 E-value=1.3e+02 Score=25.15 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=34.3
Q ss_pred HHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHH
Q 009967 100 LLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160 (521)
Q Consensus 100 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 160 (521)
.+.|+.++..-. .++..+...++.-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344555444333 333444444556677777777777765566655555566666666543
No 490
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=34.86 E-value=5.1e+02 Score=26.47 Aligned_cols=73 Identities=7% Similarity=-0.111 Sum_probs=45.7
Q ss_pred CCCccchHHHHHHHhhcCCCchhhhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHC
Q 009967 25 PNYLIETQKASVQKLETPAIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL 102 (521)
Q Consensus 25 ~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 102 (521)
..+..+++.|.+....+- |-.-+....++.-|.++-.+-.-...-.|.+-.-+|.+.+++..|..-|.+..+.
T Consensus 544 i~hv~SLDdIad~~asec-----LRdqLie~ErYqlaV~mckKc~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafkl 616 (1141)
T KOG1811|consen 544 IRHVPSLDDIADPAASEC-----LRDQLIEAERYQLAVEMCKKCGIDTFGAWHAWGLACLKAENLAAAREKFKQAFKL 616 (1141)
T ss_pred hccCCCHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Confidence 344444544444443332 2223334455566666665543334457888899999999999999999988764
No 491
>PRK14700 recombination factor protein RarA; Provisional
Probab=34.75 E-value=3.7e+02 Score=24.84 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=35.4
Q ss_pred ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc
Q 009967 204 NVVSWNAMIGGYSQ---TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254 (521)
Q Consensus 204 ~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 254 (521)
+...+-.+++++.+ ..|++.|+-++..|.+.|-.|....-..++.++-..|
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 33344455666654 5789999999999999997777666666666665555
No 492
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=34.74 E-value=88 Score=21.85 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=35.3
Q ss_pred chHHHHHHHhhcCCCchh-hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcC
Q 009967 30 ETQKASVQKLETPAIRTD-SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQH 87 (521)
Q Consensus 30 ~~~~~~~~~~~~g~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 87 (521)
....+.+.+...|.++.. .-.........+.+.++++.+...+..+|..+..++-..+
T Consensus 14 ~~~~il~~L~~~~vlt~~e~~~i~~~~~~~~k~~~Lld~l~~kg~~af~~F~~~L~~~~ 72 (80)
T cd01671 14 DVEDVLDHLLSDGVLTEEEYEKIRSESTRQDKARKLLDILPRKGPKAFQSFLQALQETD 72 (80)
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 455666777777755555 2222222236677777777777777777777777766555
No 493
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.52 E-value=2.2e+02 Score=27.88 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967 399 FLYDLPFDPGIG--FWKALLGGCQIHSNVELGEFAARRILALDPED 442 (521)
Q Consensus 399 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 442 (521)
+|....+.|... +...-+..+.+.+++..|-.+.+++++++|+.
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 344444455433 55666777889999999999999999999854
No 494
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.45 E-value=7.1e+02 Score=28.01 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=87.8
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-------------------C-----------C--hhHHHHHHHHHHHcCChHHHHHHH
Q 009967 282 ISFYAKCGSMEDSLLVFDKLTE-------------------R-----------N--IVTWNAVICGYAQNGRGEEAIEFF 329 (521)
Q Consensus 282 ~~~~~~~g~~~~A~~~~~~~~~-------------------~-----------~--~~~~~~li~~~~~~~~~~~A~~~~ 329 (521)
..+|...|+..+|.+.|.+... + . .+-|...++.+-+.+..+.+.++-
T Consensus 927 g~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA 1006 (1480)
T KOG4521|consen 927 GIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLA 1006 (1480)
T ss_pred heeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3346677888888888876542 0 1 234666777778888888888877
Q ss_pred HHHHHCCCCCCHH----HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHH-------
Q 009967 330 ERMRINGIRPNGV----TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKE------- 398 (521)
Q Consensus 330 ~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~------- 398 (521)
..+.+. ++++.. +++.+.+-....|.+-+|...+-+.. .......+...++..+..+|.++.-.+
T Consensus 1007 ~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---dserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1007 VKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---DSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Confidence 776653 233322 45555556667777777766553321 111223456777777778877654322
Q ss_pred ------HHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCC
Q 009967 399 ------FLYDLP-FDP--GIGFWKALLGGCQIHSNVELGE-FAARRILALDPE 441 (521)
Q Consensus 399 ------~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~p~ 441 (521)
+++... ..| ....|+.|...+...+++.+|- ..|+.+.++..+
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 122111 011 1123444444566677777665 455556665543
No 495
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=34.30 E-value=89 Score=22.27 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=35.4
Q ss_pred chHHHHHHHhhcCCCchh-hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHH
Q 009967 30 ETQKASVQKLETPAIRTD-SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFA 84 (521)
Q Consensus 30 ~~~~~~~~~~~~g~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 84 (521)
.+..+.+.+...|.++.. .=..-+..-..++|+++++.++..+..++..+..++.
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~T~~~kar~Lld~l~~kG~~A~~~F~~~L~ 71 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEKTNQEKMRKLFSFVRSWGASCKDIFYQILR 71 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455677777777755555 2222224456778888888777777777777777663
No 496
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=34.27 E-value=4.1e+02 Score=25.12 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=55.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCChhhHHHHHHHHHhhcchH
Q 009967 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV-NLFIEMLREGLVPNHSTLPCAIIAAANIAALG 257 (521)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 257 (521)
.+.+.+++.++.+.+..+-+.+..--.....++..++-...-.+... .+.+.+... ||......++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 44566777776666666655555544455566666665555444433 333334332 77777777888877776666
Q ss_pred HHHHHHHHHHHcCCCCCh
Q 009967 258 MGKSFHACAVKFLGKLDV 275 (521)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~ 275 (521)
.....+....+.....+.
T Consensus 248 ~~~~~i~~~L~~~~~~~~ 265 (340)
T PF12069_consen 248 LVAILIDALLQSPRLCHP 265 (340)
T ss_pred HHHHHHHHHhcCcccCCh
Confidence 666656666555433333
No 497
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=34.24 E-value=4.8e+02 Score=25.91 Aligned_cols=115 Identities=13% Similarity=0.063 Sum_probs=69.7
Q ss_pred HHcCCCChHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHH
Q 009967 117 SSTALEDLNLGKQLHAWATK-VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFED 192 (521)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 192 (521)
.-...|+...|-+-+...++ ..-.|+... .....+...|+++.+...+..... ....+...+++...+.|+++.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 33455676665544444443 222344333 333455678889888888876654 566677788888888889988
Q ss_pred HHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967 193 ALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233 (521)
Q Consensus 193 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 233 (521)
|..+-.-|.. .+...........-..|-++++...++++..
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 8888776654 2333333333333445666777777766654
No 498
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=33.22 E-value=3.7e+02 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhHH
Q 009967 74 VSATTIIGRFAKQHHYEEAIYLFSRMLL 101 (521)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 101 (521)
.....+++.+.+.|....|..+.+.+..
T Consensus 83 l~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 83 LFLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred echHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 3456788888888888888888887754
No 499
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.53 E-value=2.3e+02 Score=30.33 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=72.0
Q ss_pred hhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHH
Q 009967 49 VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGK 128 (521)
Q Consensus 49 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 128 (521)
......+|+++.|++.-.++.+ ..+|..|...-.++|+.+-|...|++.+.- ..+--.|.-.|+.++-.
T Consensus 650 F~LaLe~gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHH
Confidence 4455566666666666665553 467888999888999998888888876542 22222345567777666
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967 129 QLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201 (521)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 201 (521)
+....+..+ .|.... ..+ -.-.|+.++-.++++....-+. .|. .-...|.-++|.++.++..
T Consensus 719 Km~~iae~r---~D~~~~--~qn-alYl~dv~ervkIl~n~g~~~l-ayl----ta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 719 KMMKIAEIR---NDATGQ--FQN-ALYLGDVKERVKILENGGQLPL-AYL----TAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHHHhh---hhhHHH--HHH-HHHhccHHHHHHHHHhcCcccH-HHH----HHhhcCcHHHHHHHHHhhc
Confidence 555444332 222111 111 1124666666666665543211 110 1123455566666666554
No 500
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=32.25 E-value=1.1e+02 Score=22.58 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=36.9
Q ss_pred hHHHHHHHhhcCCCchh---hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHH
Q 009967 31 TQKASVQKLETPAIRTD---SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIY 94 (521)
Q Consensus 31 ~~~~~~~~~~~g~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 94 (521)
...+.+.+...|.++.. -|+. ..-..++|+++++.++..+..++..++.++ +..++.-+..
T Consensus 25 v~~ilD~Ll~~~Vlt~ee~e~I~~--~~t~~~qAr~Lld~l~~KG~~A~~~F~~~L-~e~~~~L~~~ 88 (94)
T cd08329 25 VLPILDSLLSANVITEQEYDVIKQ--KTQTPLQARELIDTVLVKGNAAAEVFRNCL-KKNDPVLYRD 88 (94)
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHc--CCChHHHHHHHHHHHHhhhHHHHHHHHHHH-HhcCHhHHHH
Confidence 44567777777755555 3333 333357788888777777777777777766 3334443333
Done!